Query 023037
Match_columns 288
No_of_seqs 118 out of 331
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 07:59:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023037.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023037hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1464 COP9 signalosome, subu 100.0 2.3E-80 5E-85 557.4 23.2 273 14-288 25-297 (440)
2 KOG1463 26S proteasome regulat 100.0 2.9E-58 6.4E-63 422.6 21.1 245 21-280 8-268 (411)
3 COG5159 RPN6 26S proteasome re 100.0 1.2E-48 2.7E-53 353.4 21.5 239 26-279 13-264 (421)
4 KOG1840 Kinesin light chain [C 98.8 6.6E-07 1.4E-11 89.0 18.8 216 29-251 254-479 (508)
5 PRK11788 tetratricopeptide rep 98.7 5.5E-06 1.2E-10 78.3 21.9 95 139-251 217-311 (389)
6 PRK11788 tetratricopeptide rep 98.7 6.1E-06 1.3E-10 78.0 22.0 198 28-251 81-278 (389)
7 TIGR02521 type_IV_pilW type IV 98.6 1.5E-05 3.4E-10 67.8 20.7 186 28-248 43-229 (234)
8 PF14938 SNAP: Soluble NSF att 98.5 2.8E-05 6.1E-10 71.7 21.8 186 54-248 35-222 (282)
9 TIGR00990 3a0801s09 mitochondr 98.5 2.2E-05 4.8E-10 79.8 22.2 55 29-84 307-361 (615)
10 PF14938 SNAP: Soluble NSF att 98.5 3.8E-05 8.3E-10 70.9 21.2 198 13-217 30-231 (282)
11 TIGR00990 3a0801s09 mitochondr 98.5 2E-05 4.3E-10 80.1 20.4 156 29-214 344-499 (615)
12 PF10602 RPN7: 26S proteasome 98.4 2.2E-05 4.8E-10 68.0 15.6 127 137-274 37-168 (177)
13 TIGR02917 PEP_TPR_lipo putativ 98.4 4.3E-05 9.2E-10 77.9 20.0 205 20-251 25-256 (899)
14 KOG1840 Kinesin light chain [C 98.4 0.00017 3.8E-09 72.0 23.5 237 28-272 211-459 (508)
15 PF09976 TPR_21: Tetratricopep 98.3 1.9E-05 4.1E-10 65.5 14.0 123 28-209 23-145 (145)
16 TIGR02521 type_IV_pilW type IV 98.3 0.00019 4.1E-09 61.0 19.7 172 50-251 27-198 (234)
17 TIGR02917 PEP_TPR_lipo putativ 98.3 0.00016 3.4E-09 73.8 21.3 188 29-252 138-325 (899)
18 KOG4626 O-linked N-acetylgluco 98.2 2.6E-05 5.7E-10 78.3 13.2 60 183-242 389-449 (966)
19 KOG4626 O-linked N-acetylgluco 98.2 0.00012 2.5E-09 73.8 17.4 156 29-214 299-454 (966)
20 TIGR03302 OM_YfiO outer membra 98.1 0.00068 1.5E-08 59.9 20.2 175 21-208 37-229 (235)
21 TIGR00540 hemY_coli hemY prote 98.1 0.00034 7.3E-09 67.8 18.3 193 29-251 166-366 (409)
22 PRK11447 cellulose synthase su 98.1 0.0002 4.2E-09 78.3 18.2 203 28-252 281-525 (1157)
23 PRK02603 photosystem I assembl 98.0 0.00043 9.2E-09 58.9 15.6 133 137-281 36-172 (172)
24 PF12569 NARP1: NMDA receptor- 98.0 0.0024 5.2E-08 64.2 22.8 242 14-270 2-275 (517)
25 PRK11447 cellulose synthase su 98.0 0.0013 2.8E-08 71.9 22.2 53 28-84 473-525 (1157)
26 PF09976 TPR_21: Tetratricopep 98.0 0.00051 1.1E-08 56.9 14.9 96 137-248 49-144 (145)
27 PRK10866 outer membrane biogen 97.9 0.0011 2.4E-08 60.2 18.2 178 18-206 33-236 (243)
28 COG2956 Predicted N-acetylgluc 97.9 0.0016 3.4E-08 61.4 19.2 197 20-244 38-236 (389)
29 TIGR03302 OM_YfiO outer membra 97.9 0.002 4.4E-08 56.8 18.1 171 50-276 29-218 (235)
30 CHL00033 ycf3 photosystem I as 97.8 0.00045 9.7E-09 58.4 13.1 127 133-268 32-162 (168)
31 KOG2002 TPR-containing nuclear 97.8 0.0016 3.4E-08 68.4 18.6 199 32-252 146-372 (1018)
32 PRK11189 lipoprotein NlpI; Pro 97.8 0.0046 9.9E-08 57.5 20.2 195 30-251 40-265 (296)
33 PRK04841 transcriptional regul 97.8 0.0039 8.5E-08 65.7 21.5 229 28-258 503-767 (903)
34 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.00048 1E-08 53.4 11.2 116 137-266 3-118 (119)
35 PF13525 YfiO: Outer membrane 97.8 0.0034 7.5E-08 55.1 17.8 172 19-202 7-198 (203)
36 KOG1130 Predicted G-alpha GTPa 97.8 0.00034 7.5E-09 67.7 11.8 244 29-280 68-351 (639)
37 PRK15174 Vi polysaccharide exp 97.7 0.0034 7.3E-08 64.8 20.0 95 138-250 248-346 (656)
38 PF13525 YfiO: Outer membrane 97.7 0.0093 2E-07 52.4 20.1 169 51-275 2-192 (203)
39 cd00189 TPR Tetratricopeptide 97.7 0.00042 9E-09 49.2 9.6 97 138-252 2-98 (100)
40 PRK10049 pgaA outer membrane p 97.7 0.0039 8.4E-08 65.4 20.5 204 29-264 250-469 (765)
41 PRK10747 putative protoheme IX 97.7 0.0042 9E-08 60.1 18.7 94 136-251 263-357 (398)
42 PRK04841 transcriptional regul 97.7 0.012 2.5E-07 62.2 23.4 221 28-256 421-646 (903)
43 PRK09782 bacteriophage N4 rece 97.7 0.0034 7.4E-08 67.6 19.4 100 136-253 609-708 (987)
44 PRK15174 Vi polysaccharide exp 97.6 0.0092 2E-07 61.6 21.5 99 136-252 284-382 (656)
45 PF13424 TPR_12: Tetratricopep 97.6 0.00047 1E-08 50.6 8.5 74 180-253 3-77 (78)
46 KOG1173 Anaphase-promoting com 97.6 0.0044 9.6E-08 61.9 17.5 173 17-213 317-520 (611)
47 PF13429 TPR_15: Tetratricopep 97.6 0.0014 3.1E-08 59.8 13.3 104 137-261 147-251 (280)
48 PLN03218 maturation of RBCL 1; 97.6 0.018 3.8E-07 62.7 23.2 29 137-165 615-643 (1060)
49 KOG2003 TPR repeat-containing 97.5 0.008 1.7E-07 59.0 17.8 201 27-268 501-701 (840)
50 PF13424 TPR_12: Tetratricopep 97.5 0.00056 1.2E-08 50.1 7.6 72 136-212 5-76 (78)
51 cd05804 StaR_like StaR_like; a 97.5 0.013 2.8E-07 54.7 18.4 193 30-250 20-214 (355)
52 COG2956 Predicted N-acetylgluc 97.4 0.025 5.3E-07 53.5 19.2 199 29-247 82-307 (389)
53 PRK10370 formate-dependent nit 97.4 0.014 3.1E-07 51.2 16.7 119 138-276 75-196 (198)
54 cd05804 StaR_like StaR_like; a 97.4 0.029 6.3E-07 52.3 19.5 73 187-259 269-344 (355)
55 PRK10370 formate-dependent nit 97.4 0.012 2.6E-07 51.6 15.6 52 29-84 52-103 (198)
56 PRK10049 pgaA outer membrane p 97.4 0.038 8.2E-07 58.0 21.9 202 33-252 213-423 (765)
57 PRK09782 bacteriophage N4 rece 97.3 0.02 4.3E-07 61.9 19.6 96 137-250 644-739 (987)
58 TIGR02795 tol_pal_ybgF tol-pal 97.3 0.007 1.5E-07 46.7 12.3 103 55-211 3-105 (119)
59 KOG1126 DNA-binding cell divis 97.3 0.0029 6.2E-08 64.1 12.1 133 54-213 489-622 (638)
60 PRK12370 invasion protein regu 97.3 0.013 2.9E-07 59.1 17.1 196 20-250 261-469 (553)
61 KOG2003 TPR repeat-containing 97.3 0.034 7.4E-07 54.8 18.8 231 28-276 249-557 (840)
62 KOG2002 TPR-containing nuclear 97.3 0.014 3E-07 61.6 17.1 196 29-256 283-486 (1018)
63 COG4105 ComL DNA uptake lipopr 97.3 0.04 8.7E-07 50.4 18.3 178 14-203 31-225 (254)
64 PLN03218 maturation of RBCL 1; 97.3 0.031 6.8E-07 60.8 20.6 133 56-209 509-641 (1060)
65 PRK11189 lipoprotein NlpI; Pro 97.3 0.017 3.7E-07 53.6 16.4 168 29-212 77-266 (296)
66 PRK12370 invasion protein regu 97.2 0.055 1.2E-06 54.7 20.0 154 29-211 317-470 (553)
67 PLN03081 pentatricopeptide (PP 97.2 0.014 2.9E-07 60.4 15.9 179 29-248 373-554 (697)
68 KOG1941 Acetylcholine receptor 97.1 0.065 1.4E-06 51.6 18.5 228 29-273 19-256 (518)
69 PRK15359 type III secretion sy 97.1 0.021 4.5E-07 47.4 13.7 123 36-225 13-136 (144)
70 TIGR00540 hemY_coli hemY prote 97.0 0.024 5.1E-07 55.0 15.0 143 54-217 263-405 (409)
71 PLN03081 pentatricopeptide (PP 97.0 0.039 8.5E-07 57.1 17.4 186 29-245 272-485 (697)
72 PLN03077 Protein ECB2; Provisi 96.9 0.058 1.3E-06 57.1 18.3 147 29-209 336-482 (857)
73 TIGR02552 LcrH_SycD type III s 96.9 0.012 2.6E-07 47.1 9.8 98 137-252 18-115 (135)
74 PF13429 TPR_15: Tetratricopep 96.8 0.057 1.2E-06 49.1 15.4 49 28-81 89-137 (280)
75 TIGR02552 LcrH_SycD type III s 96.8 0.069 1.5E-06 42.6 14.0 112 38-213 5-116 (135)
76 CHL00033 ycf3 photosystem I as 96.7 0.073 1.6E-06 44.8 14.3 132 28-211 11-142 (168)
77 PRK10803 tol-pal system protei 96.7 0.016 3.5E-07 53.4 10.8 105 17-167 142-248 (263)
78 PF12895 Apc3: Anaphase-promot 96.7 0.016 3.4E-07 43.2 9.0 59 137-208 26-84 (84)
79 cd00189 TPR Tetratricopeptide 96.7 0.033 7.3E-07 39.1 10.3 96 56-211 2-97 (100)
80 PRK10747 putative protoheme IX 96.6 0.19 4.2E-06 48.6 17.8 59 182-249 263-321 (398)
81 PF12895 Apc3: Anaphase-promot 96.6 0.013 2.8E-07 43.7 7.6 84 148-248 1-84 (84)
82 KOG1130 Predicted G-alpha GTPa 96.6 0.018 3.9E-07 56.1 10.2 177 33-219 172-352 (639)
83 PRK10866 outer membrane biogen 96.5 0.29 6.2E-06 44.4 17.4 169 52-276 30-227 (243)
84 KOG2300 Uncharacterized conser 96.5 0.23 5E-06 49.4 17.5 188 54-251 323-514 (629)
85 KOG1125 TPR repeat-containing 96.4 0.15 3.2E-06 51.4 15.9 213 33-281 336-562 (579)
86 PF10345 Cohesin_load: Cohesin 96.4 0.27 5.9E-06 50.3 18.5 142 112-260 30-177 (608)
87 PLN03077 Protein ECB2; Provisi 96.4 0.23 5.1E-06 52.6 18.5 96 137-247 555-650 (857)
88 PF13432 TPR_16: Tetratricopep 96.4 0.014 3E-07 41.1 6.5 53 28-84 9-61 (65)
89 PF13432 TPR_16: Tetratricopep 96.4 0.016 3.5E-07 40.8 6.8 61 140-212 1-61 (65)
90 PF12569 NARP1: NMDA receptor- 96.4 0.61 1.3E-05 47.1 20.5 212 28-255 50-338 (517)
91 KOG1941 Acetylcholine receptor 96.4 0.27 5.8E-06 47.5 16.6 185 55-256 7-196 (518)
92 PF13414 TPR_11: TPR repeat; P 96.4 0.021 4.6E-07 40.5 7.3 63 182-250 3-66 (69)
93 KOG1155 Anaphase-promoting com 96.3 0.25 5.5E-06 48.8 16.6 197 18-251 336-536 (559)
94 COG2976 Uncharacterized protei 96.3 0.1 2.3E-06 46.0 12.5 105 50-212 85-189 (207)
95 PRK15179 Vi polysaccharide bio 96.3 0.12 2.5E-06 54.0 15.1 176 54-270 86-264 (694)
96 PRK14574 hmsH outer membrane p 96.3 0.24 5.3E-06 52.6 17.6 164 56-252 36-199 (822)
97 PF13414 TPR_11: TPR repeat; P 96.2 0.029 6.4E-07 39.7 7.4 63 138-212 5-68 (69)
98 KOG0547 Translocase of outer m 96.2 0.67 1.4E-05 46.3 18.6 92 111-214 402-494 (606)
99 PRK02603 photosystem I assembl 96.2 0.13 2.9E-06 43.5 12.4 109 53-211 34-142 (172)
100 KOG1126 DNA-binding cell divis 96.1 0.17 3.7E-06 51.5 14.6 193 30-247 333-582 (638)
101 PF13176 TPR_7: Tetratricopept 96.1 0.013 2.9E-07 37.0 4.4 29 56-84 1-29 (36)
102 COG3063 PilF Tfp pilus assembl 96.1 0.057 1.2E-06 48.8 9.8 117 135-272 34-150 (250)
103 PLN03088 SGT1, suppressor of 96.0 0.16 3.4E-06 48.6 13.6 114 57-232 5-118 (356)
104 PF14559 TPR_19: Tetratricopep 96.0 0.0098 2.1E-07 42.1 4.0 53 28-84 3-55 (68)
105 KOG0548 Molecular co-chaperone 96.0 0.79 1.7E-05 45.9 18.4 155 52-250 296-454 (539)
106 PF10602 RPN7: 26S proteasome 96.0 0.12 2.5E-06 44.8 11.4 109 53-212 35-143 (177)
107 KOG2300 Uncharacterized conser 95.9 0.38 8.2E-06 47.9 15.5 146 120-274 26-178 (629)
108 PLN03088 SGT1, suppressor of 95.9 0.087 1.9E-06 50.4 11.0 94 141-252 7-100 (356)
109 COG5010 TadD Flp pilus assembl 95.8 0.14 3.1E-06 46.8 11.5 105 142-266 106-210 (257)
110 PF04733 Coatomer_E: Coatomer 95.8 0.9 1.9E-05 42.4 17.0 216 27-277 12-251 (290)
111 KOG2076 RNA polymerase III tra 95.7 0.68 1.5E-05 48.9 17.0 197 29-251 220-478 (895)
112 COG4783 Putative Zn-dependent 95.6 0.72 1.6E-05 45.7 16.3 85 138-258 376-460 (484)
113 KOG3060 Uncharacterized conser 95.5 2 4.3E-05 39.7 18.3 196 25-252 21-221 (289)
114 PF03704 BTAD: Bacterial trans 95.5 0.36 7.7E-06 39.4 12.1 136 52-225 4-143 (146)
115 KOG0547 Translocase of outer m 95.5 0.84 1.8E-05 45.6 16.2 104 137-252 463-567 (606)
116 KOG2076 RNA polymerase III tra 95.5 0.93 2E-05 47.9 17.1 191 29-230 254-498 (895)
117 KOG0550 Molecular chaperone (D 95.4 0.59 1.3E-05 45.7 14.5 130 29-214 216-353 (486)
118 COG3063 PilF Tfp pilus assembl 95.3 0.99 2.1E-05 41.0 14.8 177 50-260 31-207 (250)
119 PF13512 TPR_18: Tetratricopep 95.3 0.25 5.3E-06 41.5 10.3 74 15-90 8-82 (142)
120 PRK10803 tol-pal system protei 95.3 0.43 9.3E-06 43.9 12.9 109 145-267 152-260 (263)
121 KOG1497 COP9 signalosome, subu 95.2 2.9 6.3E-05 39.8 18.8 157 111-275 76-236 (399)
122 PRK15359 type III secretion sy 95.2 0.28 6.2E-06 40.5 10.5 94 141-252 29-122 (144)
123 KOG0495 HAT repeat protein [RN 95.2 0.45 9.7E-06 49.0 13.4 185 29-258 664-853 (913)
124 KOG1155 Anaphase-promoting com 95.1 1.7 3.6E-05 43.3 16.9 171 59-264 335-510 (559)
125 KOG0624 dsRNA-activated protei 95.0 0.7 1.5E-05 44.4 13.4 182 20-228 41-250 (504)
126 KOG2908 26S proteasome regulat 95.0 1.9 4.2E-05 41.2 16.2 130 69-210 53-182 (380)
127 KOG1129 TPR repeat-containing 94.9 0.22 4.8E-06 47.5 9.9 181 30-248 270-455 (478)
128 PRK14574 hmsH outer membrane p 94.9 1.9 4E-05 46.1 17.8 199 33-248 268-476 (822)
129 PF00244 14-3-3: 14-3-3 protei 94.8 3 6.5E-05 37.7 18.1 56 198-253 142-200 (236)
130 KOG2376 Signal recognition par 94.7 1.8 3.8E-05 44.1 16.0 156 29-209 92-251 (652)
131 KOG1498 26S proteasome regulat 94.7 4.2 9E-05 39.7 17.8 232 24-273 20-264 (439)
132 PF13371 TPR_9: Tetratricopept 94.4 0.21 4.5E-06 35.6 6.8 60 142-213 1-60 (73)
133 PF14559 TPR_19: Tetratricopep 94.4 0.11 2.4E-06 36.5 5.2 57 146-214 1-57 (68)
134 PRK15363 pathogenicity island 94.4 1.8 4E-05 36.9 13.4 111 51-221 32-143 (157)
135 KOG1156 N-terminal acetyltrans 94.1 8.1 0.00018 39.9 22.2 226 28-272 197-454 (700)
136 PF13371 TPR_9: Tetratricopept 94.1 0.24 5.1E-06 35.3 6.5 53 28-84 7-59 (73)
137 KOG0550 Molecular chaperone (D 94.1 1.7 3.6E-05 42.7 13.9 210 33-265 149-368 (486)
138 PRK15363 pathogenicity island 94.0 0.64 1.4E-05 39.6 9.8 94 140-252 39-133 (157)
139 KOG1129 TPR repeat-containing 94.0 0.85 1.8E-05 43.6 11.4 160 58-253 227-389 (478)
140 PRK14720 transcript cleavage f 93.8 2.6 5.7E-05 45.3 16.0 29 137-165 224-252 (906)
141 COG5600 Transcription-associat 93.7 0.33 7.2E-06 46.8 8.4 129 148-277 142-275 (413)
142 KOG2376 Signal recognition par 93.7 3.6 7.9E-05 41.9 15.9 195 25-243 21-245 (652)
143 KOG4555 TPR repeat-containing 93.6 2.6 5.5E-05 35.5 12.3 115 142-274 49-167 (175)
144 PF07719 TPR_2: Tetratricopept 93.5 0.22 4.8E-06 30.0 4.8 30 55-84 2-31 (34)
145 PRK14720 transcript cleavage f 93.5 1.9 4.2E-05 46.2 14.5 157 51-258 28-185 (906)
146 PF00515 TPR_1: Tetratricopept 93.5 0.22 4.8E-06 30.3 4.8 30 55-84 2-31 (34)
147 PF13181 TPR_8: Tetratricopept 93.4 0.23 5.1E-06 30.1 4.7 30 55-84 2-31 (34)
148 KOG1585 Protein required for f 93.3 3.9 8.5E-05 37.7 14.2 175 30-213 45-221 (308)
149 KOG2688 Transcription-associat 93.3 0.32 7E-06 47.2 7.7 133 153-285 133-269 (394)
150 KOG3060 Uncharacterized conser 93.1 2.7 5.8E-05 38.9 12.9 142 61-229 93-236 (289)
151 PRK15179 Vi polysaccharide bio 93.1 13 0.00028 39.0 19.8 189 36-253 31-219 (694)
152 PF13174 TPR_6: Tetratricopept 92.9 0.17 3.6E-06 30.3 3.4 29 56-84 2-30 (33)
153 KOG0686 COP9 signalosome, subu 92.8 6.7 0.00015 38.5 15.7 126 137-273 151-281 (466)
154 PF13374 TPR_10: Tetratricopep 92.8 0.32 7E-06 30.5 4.9 34 54-87 2-35 (42)
155 PF10345 Cohesin_load: Cohesin 92.8 13 0.00028 38.1 23.9 223 29-256 73-335 (608)
156 PF12688 TPR_5: Tetratrico pep 92.7 0.54 1.2E-05 38.2 7.2 64 20-84 4-68 (120)
157 KOG0495 HAT repeat protein [RN 92.5 5.4 0.00012 41.5 15.2 106 114-231 629-735 (913)
158 KOG0543 FKBP-type peptidyl-pro 92.4 1.6 3.4E-05 42.5 11.0 114 54-212 208-321 (397)
159 COG1729 Uncharacterized protei 92.0 0.89 1.9E-05 41.9 8.4 103 20-168 144-247 (262)
160 PF03704 BTAD: Bacterial trans 91.7 1.5 3.2E-05 35.7 8.8 56 28-87 74-129 (146)
161 PF13374 TPR_10: Tetratricopep 91.7 0.3 6.6E-06 30.6 3.7 37 135-171 1-37 (42)
162 PF09295 ChAPs: ChAPs (Chs5p-A 91.3 4.3 9.3E-05 39.7 12.8 121 59-208 174-294 (395)
163 COG5187 RPN7 26S proteasome re 91.3 14 0.00029 35.1 18.1 137 134-279 113-249 (412)
164 PF10579 Rapsyn_N: Rapsyn N-te 90.9 0.82 1.8E-05 34.6 5.8 64 15-84 10-73 (80)
165 KOG0687 26S proteasome regulat 90.6 14 0.0003 35.4 14.9 136 132-277 100-236 (393)
166 PF04733 Coatomer_E: Coatomer 90.6 1.4 3.1E-05 41.0 8.5 66 134-211 199-265 (290)
167 PLN03098 LPA1 LOW PSII ACCUMUL 90.5 2.1 4.6E-05 42.4 9.8 55 28-83 87-141 (453)
168 COG4700 Uncharacterized protei 90.4 8 0.00017 34.4 12.3 175 2-250 29-221 (251)
169 KOG2471 TPR repeat-containing 90.3 8.2 0.00018 38.9 13.6 186 54-254 100-315 (696)
170 PF12862 Apc5: Anaphase-promot 90.1 4.6 9.9E-05 30.8 9.7 80 193-273 9-91 (94)
171 PF13181 TPR_8: Tetratricopept 90.0 0.89 1.9E-05 27.4 4.6 31 183-213 2-32 (34)
172 KOG3616 Selective LIM binding 89.6 6.5 0.00014 41.5 12.7 75 19-94 662-745 (1636)
173 KOG1174 Anaphase-promoting com 89.6 12 0.00027 37.0 14.0 80 114-212 422-501 (564)
174 PF12862 Apc5: Anaphase-promot 88.9 3.7 8E-05 31.4 8.4 63 25-88 7-75 (94)
175 PF04190 DUF410: Protein of un 88.8 4 8.7E-05 37.4 9.9 96 55-155 11-109 (260)
176 KOG1586 Protein required for f 88.6 18 0.0004 33.2 13.6 89 17-105 73-165 (288)
177 KOG0624 dsRNA-activated protei 88.5 8.5 0.00018 37.3 11.9 162 28-209 201-368 (504)
178 COG5010 TadD Flp pilus assembl 88.4 8.1 0.00018 35.5 11.4 118 27-163 111-229 (257)
179 KOG3617 WD40 and TPR repeat-co 88.1 30 0.00065 37.3 16.3 171 55-247 968-1170(1416)
180 KOG4234 TPR repeat-containing 87.9 20 0.00044 32.3 15.3 116 38-165 78-197 (271)
181 PF13176 TPR_7: Tetratricopept 87.2 1.4 3E-05 27.5 4.1 29 187-215 4-32 (36)
182 PF13431 TPR_17: Tetratricopep 87.1 0.69 1.5E-05 28.8 2.6 32 39-74 2-33 (34)
183 PF07719 TPR_2: Tetratricopept 87.0 1.6 3.6E-05 26.0 4.3 29 183-211 2-30 (34)
184 PF09295 ChAPs: ChAPs (Chs5p-A 85.5 14 0.0003 36.2 12.0 108 142-275 175-282 (395)
185 PF13512 TPR_18: Tetratricopep 85.5 19 0.0004 30.2 11.2 84 141-237 15-99 (142)
186 PF12688 TPR_5: Tetratrico pep 85.5 18 0.00038 29.3 11.1 101 138-250 3-103 (120)
187 PF00515 TPR_1: Tetratricopept 85.4 2.4 5.3E-05 25.5 4.5 29 183-211 2-30 (34)
188 PF08631 SPO22: Meiosis protei 85.3 30 0.00065 31.7 16.6 158 111-273 8-189 (278)
189 PF08631 SPO22: Meiosis protei 85.3 30 0.00065 31.7 20.6 193 27-274 4-206 (278)
190 TIGR03504 FimV_Cterm FimV C-te 84.9 2 4.4E-05 28.7 4.2 27 139-165 2-28 (44)
191 KOG3081 Vesicle coat complex C 84.6 9.1 0.0002 35.6 9.6 116 140-277 112-257 (299)
192 COG3071 HemY Uncharacterized e 84.3 39 0.00085 33.0 14.1 73 121-209 316-388 (400)
193 COG4235 Cytochrome c biogenesi 84.3 20 0.00042 33.6 11.8 126 112-260 135-264 (287)
194 KOG1127 TPR repeat-containing 83.9 52 0.0011 36.0 15.9 196 17-247 459-655 (1238)
195 KOG0545 Aryl-hydrocarbon recep 83.8 31 0.00068 32.0 12.6 126 56-192 180-313 (329)
196 TIGR03504 FimV_Cterm FimV C-te 83.7 2.5 5.4E-05 28.3 4.2 40 58-98 3-42 (44)
197 PF13428 TPR_14: Tetratricopep 83.6 2.5 5.5E-05 27.4 4.2 31 56-87 3-33 (44)
198 COG3071 HemY Uncharacterized e 83.3 48 0.001 32.4 20.1 191 57-269 156-388 (400)
199 PF09986 DUF2225: Uncharacteri 82.4 36 0.00077 30.3 14.5 106 110-221 91-204 (214)
200 KOG1070 rRNA processing protei 82.0 1E+02 0.0022 35.2 18.7 192 38-272 1446-1643(1710)
201 PF11817 Foie-gras_1: Foie gra 81.9 39 0.00084 30.5 14.6 82 197-278 153-235 (247)
202 KOG0548 Molecular co-chaperone 81.9 63 0.0014 32.8 16.1 122 30-165 312-455 (539)
203 PF14853 Fis1_TPR_C: Fis1 C-te 81.6 7.3 0.00016 27.0 6.1 44 55-102 2-45 (53)
204 COG1747 Uncharacterized N-term 81.4 39 0.00083 34.5 13.1 184 55-245 100-334 (711)
205 COG4235 Cytochrome c biogenesi 81.0 49 0.0011 31.0 15.5 137 27-188 133-273 (287)
206 PLN03098 LPA1 LOW PSII ACCUMUL 80.2 8.3 0.00018 38.3 8.2 71 134-213 73-143 (453)
207 KOG0543 FKBP-type peptidyl-pro 79.7 12 0.00026 36.6 8.9 105 142-252 214-321 (397)
208 smart00028 TPR Tetratricopepti 79.4 3.8 8.2E-05 22.4 3.6 29 55-83 2-30 (34)
209 KOG1156 N-terminal acetyltrans 79.1 86 0.0019 32.7 16.6 132 29-165 88-248 (700)
210 PF10300 DUF3808: Protein of u 78.8 10 0.00022 37.7 8.5 86 151-250 248-333 (468)
211 PF09986 DUF2225: Uncharacteri 78.7 8.5 0.00019 34.3 7.2 52 33-84 142-195 (214)
212 KOG2908 26S proteasome regulat 78.6 66 0.0014 31.1 13.7 89 150-244 89-179 (380)
213 PRK10153 DNA-binding transcrip 78.4 57 0.0012 33.0 13.8 61 183-250 421-481 (517)
214 KOG0553 TPR repeat-containing 78.3 26 0.00056 33.0 10.3 97 52-165 79-178 (304)
215 PRK10153 DNA-binding transcrip 77.4 86 0.0019 31.7 16.0 128 70-217 358-488 (517)
216 COG5071 RPN5 26S proteasome re 77.4 69 0.0015 30.6 19.2 192 54-260 52-250 (439)
217 PRK15331 chaperone protein Sic 77.3 26 0.00055 30.2 9.4 93 141-251 42-134 (165)
218 PF01535 PPR: PPR repeat; Int 76.0 4.5 9.7E-05 23.3 3.2 27 56-82 2-28 (31)
219 KOG3616 Selective LIM binding 75.7 54 0.0012 35.0 12.6 149 55-244 662-813 (1636)
220 PF13174 TPR_6: Tetratricopept 75.5 6.2 0.00013 23.1 3.8 28 139-166 3-30 (33)
221 COG4105 ComL DNA uptake lipopr 74.4 72 0.0016 29.4 15.9 126 138-274 73-217 (254)
222 PF11817 Foie-gras_1: Foie gra 74.1 48 0.001 29.9 10.9 80 116-201 158-237 (247)
223 PF13428 TPR_14: Tetratricopep 73.9 6.9 0.00015 25.3 4.0 30 138-167 3-32 (44)
224 KOG1127 TPR repeat-containing 73.4 1.3E+02 0.0028 33.2 15.0 71 132-209 150-220 (1238)
225 PF07721 TPR_4: Tetratricopept 71.9 6.1 0.00013 22.8 3.0 23 56-78 3-25 (26)
226 TIGR01716 RGG_Cterm transcript 71.9 54 0.0012 28.4 10.5 82 131-218 123-204 (220)
227 TIGR00756 PPR pentatricopeptid 71.8 8.6 0.00019 22.4 3.9 27 56-82 2-28 (35)
228 KOG4162 Predicted calmodulin-b 71.6 1.4E+02 0.0031 31.7 21.0 133 131-283 642-794 (799)
229 KOG1173 Anaphase-promoting com 70.7 1.3E+02 0.0029 30.9 14.8 121 139-272 417-537 (611)
230 KOG2114 Vacuolar assembly/sort 70.0 43 0.00094 35.8 10.5 52 53-104 367-420 (933)
231 PF04781 DUF627: Protein of un 69.9 49 0.0011 26.6 8.7 56 141-205 1-59 (111)
232 KOG0553 TPR repeat-containing 69.7 16 0.00034 34.5 6.7 57 28-84 93-179 (304)
233 KOG0551 Hsp90 co-chaperone CNS 69.5 25 0.00055 33.8 8.1 120 148-277 54-179 (390)
234 PF10300 DUF3808: Protein of u 68.6 13 0.00028 37.0 6.4 68 16-83 266-334 (468)
235 PF12854 PPR_1: PPR repeat 68.3 8.8 0.00019 23.6 3.4 26 55-80 8-33 (34)
236 KOG4648 Uncharacterized conser 67.4 44 0.00094 32.6 9.2 93 56-165 99-194 (536)
237 smart00101 14_3_3 14-3-3 homol 66.5 1E+02 0.0023 28.1 17.6 55 198-252 144-201 (244)
238 KOG4162 Predicted calmodulin-b 66.4 1.9E+02 0.004 30.9 20.6 215 33-263 461-723 (799)
239 PF13041 PPR_2: PPR repeat fam 66.0 13 0.00028 24.5 4.1 28 56-83 5-32 (50)
240 PF13812 PPR_3: Pentatricopept 65.7 16 0.00035 21.4 4.2 27 56-82 3-29 (34)
241 KOG3364 Membrane protein invol 64.6 86 0.0019 26.4 9.4 88 113-210 9-99 (149)
242 KOG4340 Uncharacterized conser 64.5 1.1E+02 0.0024 29.4 11.1 70 138-207 180-266 (459)
243 PF06552 TOM20_plant: Plant sp 64.0 26 0.00056 30.7 6.5 71 33-107 52-126 (186)
244 KOG4555 TPR repeat-containing 63.6 30 0.00065 29.2 6.5 52 29-84 56-107 (175)
245 COG4783 Putative Zn-dependent 63.4 31 0.00066 34.6 7.7 101 133-251 303-403 (484)
246 COG2976 Uncharacterized protei 62.8 1E+02 0.0023 27.4 10.1 97 139-252 92-189 (207)
247 COG2909 MalT ATP-dependent tra 62.1 1.2E+02 0.0027 32.7 12.1 114 138-256 417-531 (894)
248 KOG3617 WD40 and TPR repeat-co 62.1 75 0.0016 34.4 10.4 58 142-216 944-1001(1416)
249 KOG1070 rRNA processing protei 61.3 1.8E+02 0.0039 33.3 13.4 61 19-84 1461-1527(1710)
250 PF10516 SHNi-TPR: SHNi-TPR; 61.3 9.5 0.00021 24.6 2.6 31 224-254 3-33 (38)
251 PF04910 Tcf25: Transcriptiona 61.1 1.6E+02 0.0034 28.3 15.2 144 31-198 9-161 (360)
252 KOG2581 26S proteasome regulat 61.1 1.8E+02 0.0039 28.9 14.4 129 137-278 170-304 (493)
253 PF09205 DUF1955: Domain of un 60.7 1E+02 0.0022 26.0 10.8 53 146-210 96-148 (161)
254 PF07840 FadR_C: FadR C-termin 60.3 1.1E+02 0.0024 26.3 12.4 77 115-195 71-155 (164)
255 PF04053 Coatomer_WDAD: Coatom 59.9 30 0.00064 34.4 7.0 81 140-241 351-434 (443)
256 PF14689 SPOB_a: Sensor_kinase 59.6 44 0.00096 23.6 6.1 49 118-166 5-53 (62)
257 KOG2996 Rho guanine nucleotide 59.6 5.6 0.00012 40.6 1.9 49 238-286 86-134 (865)
258 PF10516 SHNi-TPR: SHNi-TPR; 58.3 23 0.00049 22.8 4.0 36 183-218 2-37 (38)
259 PF04212 MIT: MIT (microtubule 57.3 53 0.0012 23.3 6.3 29 56-84 7-35 (69)
260 KOG2047 mRNA splicing factor [ 56.8 1.9E+02 0.0041 30.5 12.0 140 29-187 151-293 (835)
261 COG1729 Uncharacterized protei 55.6 37 0.00079 31.4 6.4 66 28-95 190-255 (262)
262 PF08311 Mad3_BUB1_I: Mad3/BUB 55.2 1.1E+02 0.0024 24.7 8.8 79 114-208 44-125 (126)
263 KOG3364 Membrane protein invol 54.0 36 0.00078 28.7 5.4 54 29-84 48-101 (149)
264 PF04190 DUF410: Protein of un 51.4 98 0.0021 28.3 8.5 97 143-246 17-114 (260)
265 COG3118 Thioredoxin domain-con 51.2 2.2E+02 0.0048 26.9 13.8 144 20-187 137-284 (304)
266 KOG3785 Uncharacterized conser 50.7 2.6E+02 0.0056 27.6 13.7 50 29-82 35-85 (557)
267 COG3629 DnrI DNA-binding trans 49.9 1.6E+02 0.0036 27.4 9.8 96 126-233 138-242 (280)
268 PLN02789 farnesyltranstransfer 49.1 2.4E+02 0.0051 26.6 17.1 130 18-165 39-171 (320)
269 KOG1125 TPR repeat-containing 48.3 52 0.0011 33.7 6.6 64 29-98 443-507 (579)
270 COG3629 DnrI DNA-binding trans 48.2 97 0.0021 28.9 8.0 34 139-172 190-223 (280)
271 PF01997 Translin: Translin fa 48.0 90 0.002 27.3 7.5 122 134-268 12-185 (200)
272 PF11207 DUF2989: Protein of u 45.9 32 0.0007 30.6 4.2 45 29-73 153-197 (203)
273 KOG1914 mRNA cleavage and poly 45.6 3.6E+02 0.0079 27.9 12.2 97 152-268 347-443 (656)
274 PF14853 Fis1_TPR_C: Fis1 C-te 45.2 35 0.00076 23.5 3.5 42 19-62 3-45 (53)
275 COG5187 RPN7 26S proteasome re 45.2 2.9E+02 0.0062 26.5 13.1 129 34-167 93-223 (412)
276 PF08311 Mad3_BUB1_I: Mad3/BUB 44.4 1.2E+02 0.0027 24.4 7.3 80 60-161 32-124 (126)
277 KOG4340 Uncharacterized conser 44.2 3E+02 0.0066 26.5 11.9 56 29-89 23-78 (459)
278 PF04184 ST7: ST7 protein; In 43.5 3.7E+02 0.0081 27.4 14.1 112 27-167 179-290 (539)
279 COG3947 Response regulator con 43.3 91 0.002 29.7 6.9 58 128-197 266-328 (361)
280 PF11207 DUF2989: Protein of u 43.1 2.4E+02 0.0052 25.1 10.6 56 137-201 142-197 (203)
281 PF14561 TPR_20: Tetratricopep 42.9 91 0.002 23.7 5.9 67 35-106 7-73 (90)
282 cd02683 MIT_1 MIT: domain cont 41.3 1E+02 0.0022 22.8 5.8 27 58-84 10-36 (77)
283 KOG4507 Uncharacterized conser 41.0 63 0.0014 33.6 5.9 72 139-224 645-716 (886)
284 smart00777 Mad3_BUB1_I Mad3/BU 40.5 1.9E+02 0.0041 23.6 7.7 47 114-160 64-123 (125)
285 COG5091 SGT1 Suppressor of G2 40.3 50 0.0011 31.0 4.7 62 198-259 55-116 (368)
286 PF04097 Nic96: Nup93/Nic96; 40.3 2.8E+02 0.0061 28.6 10.8 104 53-163 413-532 (613)
287 PF07079 DUF1347: Protein of u 40.1 3.2E+02 0.007 27.6 10.4 100 142-257 12-114 (549)
288 cd02678 MIT_VPS4 MIT: domain c 39.7 1.4E+02 0.0031 21.6 6.4 28 60-88 12-39 (75)
289 KOG1128 Uncharacterized conser 38.5 5.2E+02 0.011 27.6 12.4 139 50-210 396-547 (777)
290 PF10366 Vps39_1: Vacuolar sor 38.5 43 0.00093 26.5 3.6 27 56-82 41-67 (108)
291 PRK14562 haloacid dehalogenase 36.2 3E+02 0.0066 24.2 12.8 55 214-268 108-179 (204)
292 COG2909 MalT ATP-dependent tra 36.0 6.1E+02 0.013 27.7 17.7 192 62-273 423-628 (894)
293 COG4700 Uncharacterized protei 35.7 3.3E+02 0.0071 24.5 8.9 98 139-253 92-191 (251)
294 PRK15331 chaperone protein Sic 35.5 1.2E+02 0.0026 26.1 6.0 51 28-82 49-99 (165)
295 PF09670 Cas_Cas02710: CRISPR- 35.1 4.2E+02 0.0092 25.6 13.3 74 9-84 123-199 (379)
296 cd02677 MIT_SNX15 MIT: domain 35.0 1.3E+02 0.0027 22.3 5.4 20 65-84 17-36 (75)
297 PF14689 SPOB_a: Sensor_kinase 35.0 92 0.002 21.9 4.5 31 54-84 23-53 (62)
298 KOG0686 COP9 signalosome, subu 34.6 3.1E+02 0.0068 27.2 9.3 96 54-154 150-247 (466)
299 KOG1839 Uncharacterized protei 34.2 5.6E+02 0.012 29.0 12.0 112 139-254 1018-1131(1236)
300 TIGR01716 RGG_Cterm transcript 34.1 3E+02 0.0066 23.6 18.8 189 65-264 22-210 (220)
301 cd02656 MIT MIT: domain contai 33.6 1.7E+02 0.0036 21.0 5.9 26 59-84 11-36 (75)
302 COG0497 RecN ATPase involved i 33.6 5.5E+02 0.012 26.5 14.8 146 59-212 209-372 (557)
303 PF03635 Vps35: Vacuolar prote 32.8 4.7E+02 0.01 28.0 11.1 186 76-268 417-640 (762)
304 cd02684 MIT_2 MIT: domain cont 32.3 1.8E+02 0.0039 21.3 5.8 23 62-84 14-36 (75)
305 KOG4814 Uncharacterized conser 32.3 6.4E+02 0.014 26.8 16.6 33 52-84 352-384 (872)
306 cd02682 MIT_AAA_Arch MIT: doma 32.2 2.1E+02 0.0046 21.2 6.2 33 55-88 7-39 (75)
307 KOG4234 TPR repeat-containing 32.1 3.3E+02 0.0071 24.8 8.3 90 156-250 73-162 (271)
308 PF10952 DUF2753: Protein of u 32.0 1.5E+02 0.0032 24.6 5.7 72 26-98 11-97 (140)
309 KOG2758 Translation initiation 31.6 4.2E+02 0.0092 25.7 9.4 72 53-128 128-199 (432)
310 KOG4642 Chaperone-dependent E3 31.5 3.1E+02 0.0068 25.4 8.3 107 54-174 10-118 (284)
311 cd02680 MIT_calpain7_2 MIT: do 31.4 81 0.0018 23.5 3.8 19 66-84 18-36 (75)
312 KOG1498 26S proteasome regulat 31.3 5.3E+02 0.012 25.5 14.6 173 29-214 45-244 (439)
313 PF03745 DUF309: Domain of unk 30.7 53 0.0011 23.4 2.6 27 218-244 35-61 (62)
314 PF10938 YfdX: YfdX protein; 30.6 2.5E+02 0.0054 23.6 7.2 113 139-252 5-147 (155)
315 cd07353 harmonin_N N-terminal 30.2 69 0.0015 23.7 3.1 29 239-267 19-48 (79)
316 PF09670 Cas_Cas02710: CRISPR- 30.0 5.1E+02 0.011 25.0 11.9 118 131-275 125-247 (379)
317 PF06244 DUF1014: Protein of u 29.9 70 0.0015 26.1 3.5 71 208-284 51-122 (122)
318 cd02681 MIT_calpain7_1 MIT: do 29.6 1.6E+02 0.0035 21.8 5.2 31 54-84 6-36 (76)
319 PF12968 DUF3856: Domain of Un 29.0 3.4E+02 0.0073 22.6 10.3 105 24-165 17-129 (144)
320 PF07720 TPR_3: Tetratricopept 28.6 1.6E+02 0.0034 18.5 4.6 23 56-78 3-25 (36)
321 PF02064 MAS20: MAS20 protein 28.2 1.3E+02 0.0028 24.5 4.8 38 132-169 59-96 (121)
322 PF05843 Suf: Suppressor of fo 28.0 3.4E+02 0.0073 24.8 8.2 79 121-211 19-99 (280)
323 PF04124 Dor1: Dor1-like famil 27.0 4E+02 0.0086 25.2 8.7 31 59-90 111-141 (338)
324 PF14346 DUF4398: Domain of un 26.9 1.9E+02 0.0041 22.2 5.4 59 197-255 18-78 (103)
325 KOG1586 Protein required for f 26.6 5.3E+02 0.011 24.0 18.0 104 137-256 155-263 (288)
326 KOG2168 Cullins [Cell cycle co 26.5 5.5E+02 0.012 27.8 10.1 31 135-165 704-736 (835)
327 KOG1550 Extracellular protein 26.1 2.5E+02 0.0054 28.5 7.6 120 133-272 241-371 (552)
328 PRK10941 hypothetical protein; 25.7 5.1E+02 0.011 23.9 8.9 77 124-212 169-245 (269)
329 COG5107 RNA14 Pre-mRNA 3'-end 25.5 2.4E+02 0.0052 28.6 6.9 57 194-256 409-466 (660)
330 PF04184 ST7: ST7 protein; In 25.4 2.3E+02 0.005 28.8 6.9 28 135-162 294-321 (539)
331 TIGR02878 spore_ypjB sporulati 25.1 2.2E+02 0.0047 25.9 6.1 23 62-84 13-35 (233)
332 PF04097 Nic96: Nup93/Nic96; 24.9 7.8E+02 0.017 25.4 15.2 125 13-165 325-456 (613)
333 PHA03161 hypothetical protein; 24.6 3.5E+02 0.0077 22.9 6.9 45 99-147 24-68 (150)
334 PF14276 DUF4363: Domain of un 24.6 3.5E+02 0.0076 21.3 7.3 49 110-168 42-90 (121)
335 KOG2047 mRNA splicing factor [ 24.0 8.9E+02 0.019 25.8 14.2 63 182-248 387-451 (835)
336 KOG1915 Cell cycle control pro 24.0 8E+02 0.017 25.2 18.9 70 58-127 326-397 (677)
337 KOG0687 26S proteasome regulat 23.9 6.8E+02 0.015 24.3 13.1 128 34-166 82-211 (393)
338 PF08926 DUF1908: Domain of un 23.4 1.9E+02 0.0041 27.0 5.4 61 116-185 166-236 (282)
339 PF04675 DNA_ligase_A_N: DNA l 23.1 2.7E+02 0.0059 23.2 6.2 71 63-136 83-154 (177)
340 KOG0128 RNA-binding protein SA 23.1 9.9E+02 0.021 26.0 13.6 145 53-212 112-261 (881)
341 KOG1585 Protein required for f 22.8 6.4E+02 0.014 23.6 17.2 96 141-247 115-215 (308)
342 PF09613 HrpB1_HrpK: Bacterial 22.7 94 0.002 26.6 3.2 43 222-264 44-86 (160)
343 PF14561 TPR_20: Tetratricopep 22.7 3E+02 0.0065 20.8 5.7 52 28-81 34-85 (90)
344 PF09577 Spore_YpjB: Sporulati 22.2 2.7E+02 0.0059 25.3 6.2 90 63-168 14-116 (232)
345 COG0457 NrfG FOG: TPR repeat [ 22.1 3.7E+02 0.008 20.7 18.2 193 32-254 39-234 (291)
346 KOG3081 Vesicle coat complex C 21.7 6.8E+02 0.015 23.6 14.6 57 133-201 204-260 (299)
347 TIGR02561 HrpB1_HrpK type III 21.6 58 0.0013 27.7 1.6 27 222-248 44-70 (153)
348 PF09455 Cas_DxTHG: CRISPR-ass 21.2 5E+02 0.011 24.4 8.3 46 116-161 271-316 (384)
349 PF02259 FAT: FAT domain; Int 20.9 6.3E+02 0.014 22.9 21.8 113 133-253 143-289 (352)
350 PF02259 FAT: FAT domain; Int 20.9 6.3E+02 0.014 22.9 17.1 171 66-250 41-212 (352)
351 KOG1662 Mitochondrial F1F0-ATP 20.6 1E+02 0.0022 27.5 3.0 81 137-224 100-182 (210)
352 KOG0551 Hsp90 co-chaperone CNS 20.2 8.1E+02 0.018 23.9 13.5 123 28-165 54-182 (390)
353 KOG2063 Vacuolar assembly/sort 20.1 1.6E+02 0.0035 32.0 4.9 67 53-128 503-569 (877)
No 1
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=2.3e-80 Score=557.38 Aligned_cols=273 Identities=67% Similarity=1.087 Sum_probs=267.0
Q ss_pred hhhHHHHHHhhcccCCCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhH
Q 023037 14 TVSRVLCSILEKGLVETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYS 93 (288)
Q Consensus 14 ~~~~~~~y~~ak~~~~~d~~~Al~~f~~ii~~~~e~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~ 93 (288)
.|.--+-||++|++++++|++|+..|++|++.+.++++|+||||+|++++++++|+|+++++.|+++++|+++.|+||++
T Consensus 25 dVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNyS 104 (440)
T KOG1464|consen 25 DVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYS 104 (440)
T ss_pred CcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhcccc
Confidence 45556789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCcchhhHHHHHHHHHHHHHHhhhhhhhHHhhhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCc
Q 023037 94 EKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTD 173 (288)
Q Consensus 94 ~k~i~~ild~~~~~~~~~~~~~~~~~~~~l~~i~~a~ner~~f~~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~d 173 (288)
+|+||+|+|++|.+. +++.++.||+.|++.++.++|+|+||+++.+||++|++.|+|.+..+++++||+.|+..+|+|
T Consensus 105 EKsIN~IlDyiStS~--~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGed 182 (440)
T KOG1464|consen 105 EKSINSILDYISTSK--NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGED 182 (440)
T ss_pred HHHHHHHHHHHhhhh--hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCch
Confidence 999999999999774 477999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhHHHHHHhhcchhhhhhccHHHHHHHHHHHHhhhh
Q 023037 174 DQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYD 253 (288)
Q Consensus 174 Dk~~~~~llEv~~lE~~~y~~~~n~~kak~~y~~A~~~a~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EaF~~y~ 253 (288)
|..||++|+|||++|+|+|+.++|.+|+|++|.+|+.+.++||||+|+|+|++|||+||+.||.|.+|..+|||||+|||
T Consensus 183 D~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYD 262 (440)
T KOG1464|consen 183 DQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYD 262 (440)
T ss_pred hhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCChhHHHHhHHHHHHHHhcCCCCCCCCCCCCCC
Q 023037 254 EAGNQRRIQCLKYLVLANMLMESEVNPFDGQEAKP 288 (288)
Q Consensus 254 e~g~~~a~~~LKY~~L~~il~~~~~dpF~s~E~~~ 288 (288)
|+|+|||.+||||+|||+||+.|++||||||||||
T Consensus 263 EsGspRRttCLKYLVLANMLmkS~iNPFDsQEAKP 297 (440)
T KOG1464|consen 263 ESGSPRRTTCLKYLVLANMLMKSGINPFDSQEAKP 297 (440)
T ss_pred ccCCcchhHHHHHHHHHHHHHHcCCCCCcccccCC
Confidence 99999999999999999999999999999999998
No 2
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-58 Score=422.63 Aligned_cols=245 Identities=22% Similarity=0.335 Sum_probs=231.7
Q ss_pred HHhhcccCCCCH-HHHHHHHHHhhcC------CccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhH
Q 023037 21 SILEKGLVETDP-EGALAGFAEVVAM------EPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYS 93 (288)
Q Consensus 21 y~~ak~~~~~d~-~~Al~~f~~ii~~------~~e~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~ 93 (288)
..+|....+.++ ++++..|+.+++. +++..+.++.++.+++++|.+.|+++++.+++++++||+ ..++|+++
T Consensus 8 ~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~-~~v~Kaka 86 (411)
T KOG1463|consen 8 LERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFL-SSVSKAKA 86 (411)
T ss_pred HHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH-HHhhhHHH
Confidence 778888877775 9999999999984 224678899999999999999999999999999999999 99999999
Q ss_pred HHHHHHHHHHhccCCCcchhhHHHHHHHHHHHHHHhhhhhhhH---HhhhhHHHHHhhhcchhHH----HHHHHHHHHhc
Q 023037 94 EKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWF---KTNLKLCKIWFDMGEYGRM----SKILKELHKSC 166 (288)
Q Consensus 94 ~k~i~~ild~~~~~~~~~~~~~~~~~~~~l~~i~~a~ner~~f---~~~~kL~~lyl~~~~y~~~----~~ll~elkk~~ 166 (288)
+|+||+++|.+..+++ ....++++|.+||+|+..++|+| .++.||+.+|++.++|++| ..|++|+||+
T Consensus 87 aKlvR~Lvd~~~~~~~----~~~~~i~l~~~cIeWA~~ekRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKl- 161 (411)
T KOG1463|consen 87 AKLVRSLVDMFLKIDD----GTGDQIELCTECIEWAKREKRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKL- 161 (411)
T ss_pred HHHHHHHHHHHccCCC----CcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhc-
Confidence 9999999999999987 77799999999999999999999 8899999999999999994 7788888998
Q ss_pred cCCCCCccccccchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCC-hhHHHHHHhhcchhhhhhccHHHHHHHH
Q 023037 167 QREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH-PRIMGIIRECGGKMHMAERQWADAATDF 245 (288)
Q Consensus 167 ~~~~~~dDk~~~~~llEv~~lE~~~y~~~~n~~kak~~y~~A~~~a~~I~~-p~i~a~I~~~~G~l~~~ekdy~~A~syF 245 (288)
||| .+|+|||++||++|++++|++|||+++|.|||.+|+||| |.+||.||++||++|+.|+||+||||||
T Consensus 162 ------DDK---~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha~ekDykTafSYF 232 (411)
T KOG1463|consen 162 ------DDK---ILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYF 232 (411)
T ss_pred ------ccc---cceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccceeecccccchHHHHH
Confidence 999 999999999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred HHHHhhhhhhCC-hhHHHHhHHHHHHHHhcCCCCCC
Q 023037 246 FEAFKNYDEAGN-QRRIQCLKYLVLANMLMESEVNP 280 (288)
Q Consensus 246 ~EaF~~y~e~g~-~~a~~~LKY~~L~~il~~~~~dp 280 (288)
|||||+|+..|+ ++|+.+||||+|||||.|.++|+
T Consensus 233 yEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv 268 (411)
T KOG1463|consen 233 YEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDV 268 (411)
T ss_pred HHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHH
Confidence 999999999998 59999999999999999998775
No 3
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-48 Score=353.38 Aligned_cols=239 Identities=21% Similarity=0.326 Sum_probs=224.2
Q ss_pred ccCCCCHHHHHHHHHHhhcCCc---c-chhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHH
Q 023037 26 GLVETDPEGALAGFAEVVAMEP---E-KAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIM 101 (288)
Q Consensus 26 ~~~~~d~~~Al~~f~~ii~~~~---e-~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~il 101 (288)
.++..|.++|+..|++|+.... | ..+.++.++.+|+++|...|++.++.++++++++++ ..+++++++|+||+++
T Consensus 13 ~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m-~~ftk~k~~KiirtLi 91 (421)
T COG5159 13 AVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAM-EDFTKPKITKIIRTLI 91 (421)
T ss_pred hhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHH-HHhcchhHHHHHHHHH
Confidence 3578899999999999999742 3 466799999999999999999999999999999999 9999999999999999
Q ss_pred HHhccCCCcchhhHHHHHHHHHHHHHHhhhhhhhH---HhhhhHHHHHhhhcchhH----HHHHHHHHHHhccCCCCCcc
Q 023037 102 DFVSGSASQNFSLLREFYQTTLKALEEAKNERLWF---KTNLKLCKIWFDMGEYGR----MSKILKELHKSCQREDGTDD 174 (288)
Q Consensus 102 d~~~~~~~~~~~~~~~~~~~~l~~i~~a~ner~~f---~~~~kL~~lyl~~~~y~~----~~~ll~elkk~~~~~~~~dD 174 (288)
|.++.+++ .++.++.+|..+|+|+..|+|.| .+++|++.+|+++|+|.+ +..++.|+|+. ||
T Consensus 92 ekf~~~~d----sl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~-------DD 160 (421)
T COG5159 92 EKFPYSSD----SLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKY-------DD 160 (421)
T ss_pred HhcCCCCc----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhh-------cC
Confidence 99998877 99999999999999999999998 778999999999999999 47788899999 99
Q ss_pred ccccchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCC-hhHHHHHHhhcchhhhhhccHHHHHHHHHHHHhhhh
Q 023037 175 QKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH-PRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYD 253 (288)
Q Consensus 175 k~~~~~llEv~~lE~~~y~~~~n~~kak~~y~~A~~~a~~I~~-p~i~a~I~~~~G~l~~~ekdy~~A~syF~EaF~~y~ 253 (288)
| ..|++||++|+++|++++|.+|+|+.+|+||+.+|++|| |.+||++|+++|++||+++||+||+||||||||+|.
T Consensus 161 K---~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft 237 (421)
T COG5159 161 K---INLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFT 237 (421)
T ss_pred c---cceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhccc
Confidence 9 999999999999999999999999999999999999999 899999999999999999999999999999999999
Q ss_pred hhC-ChhHHHHhHHHHHHHHhcCCCCC
Q 023037 254 EAG-NQRRIQCLKYLVLANMLMESEVN 279 (288)
Q Consensus 254 e~g-~~~a~~~LKY~~L~~il~~~~~d 279 (288)
... +.+|+++||||+|++||.|+-.+
T Consensus 238 ~l~~d~kAc~sLkYmlLSkIMlN~~~e 264 (421)
T COG5159 238 LLKMDVKACVSLKYMLLSKIMLNRREE 264 (421)
T ss_pred cccchHHHHHHHHHHHHHHHHHhhHHH
Confidence 754 57999999999999999987544
No 4
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.76 E-value=6.6e-07 Score=89.04 Aligned_cols=216 Identities=16% Similarity=0.209 Sum_probs=158.3
Q ss_pred CCCHHHHHHHHHHhhcCCc----cchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh--hhhhhHHHHHHHHHH
Q 023037 29 ETDPEGALAGFAEVVAMEP----EKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSA--VTRNYSEKCINNIMD 102 (288)
Q Consensus 29 ~~d~~~Al~~f~~ii~~~~----e~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~--v~ka~~~k~i~~ild 102 (288)
.+.+++|+..|++.+.... +...-....+.+|+.+|.++|+++++..+++..+.+.+.. .+-..++..++++..
T Consensus 254 ~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~ 333 (508)
T KOG1840|consen 254 LGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAA 333 (508)
T ss_pred hccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHH
Confidence 5788999999999998643 2233368899999999999999999999999999999442 356677777777666
Q ss_pred HhccCCCcchhhHHHHHHHHHHHHHHhhhh--hhhHHhhhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccch
Q 023037 103 FVSGSASQNFSLLREFYQTTLKALEEAKNE--RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQ 180 (288)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~l~~i~~a~ne--r~~f~~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~ 180 (288)
.+.... ..+....++..+++.+..+..+ --+.+++.+||.+|+.+|+|+++.++.++......+..+..+ ..
T Consensus 334 ~~~~~~--~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~----~~ 407 (508)
T KOG1840|consen 334 ILQSMN--EYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKD----YG 407 (508)
T ss_pred HHHHhc--chhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcC----hh
Confidence 655443 3668888888888888854433 355699999999999999999999888888887665532222 11
Q ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhc--cCCChhHHHHHHhhcchhhhhhccHHHHHHHHHHHHhh
Q 023037 181 LLEVYAIEIQMYTETKNNKKLKQLYQKALAIKS--AIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (288)
Q Consensus 181 llEv~~lE~~~y~~~~n~~kak~~y~~A~~~a~--~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EaF~~ 251 (288)
.--.+---...|...+++..|-++|..|..|.. ...||-+.+...-.+ .+|-..|+|+.|..+---....
T Consensus 408 ~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~-~~Y~~~g~~e~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 408 VGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLA-ALYRAQGNYEAAEELEEKVLNA 479 (508)
T ss_pred hhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHH-HHHHHcccHHHHHHHHHHHHHH
Confidence 112222234455788999999999999999884 233466666655443 4577899999998876554433
No 5
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.68 E-value=5.5e-06 Score=78.32 Aligned_cols=95 Identities=15% Similarity=0.208 Sum_probs=47.3
Q ss_pred hhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCh
Q 023037 139 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP 218 (288)
Q Consensus 139 ~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE~~~y~~~~n~~kak~~y~~A~~~a~~I~~p 218 (288)
...++.+|...|++++|..+++++... + . ....+++..-+.+|...+++.+|...+.++.... |.+
T Consensus 217 ~~~la~~~~~~g~~~~A~~~~~~~~~~-------~-p---~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~---p~~ 282 (389)
T PRK11788 217 SILLGDLALAQGDYAAAIEALERVEEQ-------D-P---EYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY---PGA 282 (389)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHH-------C-h---hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCc
Confidence 334455555555555555555544433 1 1 2223344444555555555555555555554431 111
Q ss_pred hHHHHHHhhcchhhhhhccHHHHHHHHHHHHhh
Q 023037 219 RIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (288)
Q Consensus 219 ~i~a~I~~~~G~l~~~ekdy~~A~syF~EaF~~ 251 (288)
. .. ..-|.++...++++.|...|.++.+.
T Consensus 283 ~---~~-~~la~~~~~~g~~~~A~~~l~~~l~~ 311 (389)
T PRK11788 283 D---LL-LALAQLLEEQEGPEAAQALLREQLRR 311 (389)
T ss_pred h---HH-HHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 1 11 34456666666777777766666665
No 6
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.67 E-value=6.1e-06 Score=77.99 Aligned_cols=198 Identities=8% Similarity=0.023 Sum_probs=138.2
Q ss_pred CCCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhccC
Q 023037 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGS 107 (288)
Q Consensus 28 ~~~d~~~Al~~f~~ii~~~~e~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~~~~~ 107 (288)
..+++++|+..++.++............++..++.+|...|+++++..+|.+.+..- +. ...+.+.+...+...
T Consensus 81 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~-----~~~~~~~la~~~~~~ 154 (389)
T PRK11788 81 RRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEG-DF-----AEGALQQLLEIYQQE 154 (389)
T ss_pred HcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cc-----hHHHHHHHHHHHHHh
Confidence 578999999999999986532333355788999999999999999999999987643 22 112333333333332
Q ss_pred CCcchhhHHHHHHHHHHHHHHhhhhhhhHHhhhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHH
Q 023037 108 ASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAI 187 (288)
Q Consensus 108 ~~~~~~~~~~~~~~~l~~i~~a~ner~~f~~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~l 187 (288)
.+ ++.....++...+. ...............++.++++.|++++|...++++.+..+ + ..+.+..
T Consensus 155 g~--~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-----~-------~~~~~~~ 219 (389)
T PRK11788 155 KD--WQKAIDVAERLEKL-GGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADP-----Q-------CVRASIL 219 (389)
T ss_pred ch--HHHHHHHHHHHHHh-cCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCc-----C-------CHHHHHH
Confidence 22 33444455554442 11111112234567899999999999999999999988721 1 1356777
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHhhhccCCChhHHHHHHhhcchhhhhhccHHHHHHHHHHHHhh
Q 023037 188 EIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (288)
Q Consensus 188 E~~~y~~~~n~~kak~~y~~A~~~a~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EaF~~ 251 (288)
-+.+|...|++.+|...+.++... +|.....+....|.+|...++++.|...|-.+.+.
T Consensus 220 la~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 278 (389)
T PRK11788 220 LGDLALAQGDYAAAIEALERVEEQ-----DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE 278 (389)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHH-----ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 889999999999999999999875 23333344445577888999999999999888764
No 7
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.61 E-value=1.5e-05 Score=67.75 Aligned_cols=186 Identities=13% Similarity=0.124 Sum_probs=125.1
Q ss_pred CCCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhccC
Q 023037 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGS 107 (288)
Q Consensus 28 ~~~d~~~Al~~f~~ii~~~~e~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~~~~~ 107 (288)
..+++++|++.|++.+..+++. ..++..++.+|..+|+++++.+++++.+... +..+. ...++-.....
T Consensus 43 ~~~~~~~A~~~~~~~l~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~-----~~~~~~~~~~~- 111 (234)
T TIGR02521 43 EQGDLEVAKENLDKALEHDPDD----YLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGD-----VLNNYGTFLCQ- 111 (234)
T ss_pred HCCCHHHHHHHHHHHHHhCccc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHH-----HHHHHHHHHHH-
Confidence 4689999999999998876542 3567789999999999999999999998775 43221 22221111111
Q ss_pred CCcchhhHHHHHHHHHHHHHHhhhhhhhHHhhhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHH
Q 023037 108 ASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAI 187 (288)
Q Consensus 108 ~~~~~~~~~~~~~~~l~~i~~a~ner~~f~~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~l 187 (288)
. .+.+.....++.+.. .. ..........+++.++...|+++++...+.++.+..+ ++ .+.+..
T Consensus 112 ~-g~~~~A~~~~~~~~~---~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~-------~~~~~~ 174 (234)
T TIGR02521 112 Q-GKYEQAMQQFEQAIE---DP-LYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP-----QR-------PESLLE 174 (234)
T ss_pred c-ccHHHHHHHHHHHHh---cc-ccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-----CC-------hHHHHH
Confidence 1 123233333333332 11 1122335567789999999999999999999887722 11 245667
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHhhhccCCC-hhHHHHHHhhcchhhhhhccHHHHHHHHHHH
Q 023037 188 EIQMYTETKNNKKLKQLYQKALAIKSAIPH-PRIMGIIRECGGKMHMAERQWADAATDFFEA 248 (288)
Q Consensus 188 E~~~y~~~~n~~kak~~y~~A~~~a~~I~~-p~i~a~I~~~~G~l~~~ekdy~~A~syF~Ea 248 (288)
-+.+|...+++.+|...+.+++... ++ |... ...+.++...++++.|..++-..
T Consensus 175 la~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~----~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 175 LAELYYLRGQYKDARAYLERYQQTY---NQTAESL----WLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHH----HHHHHHHHHHhhHHHHHHHHHHH
Confidence 7899999999999999999998872 22 3332 24577788889999988765443
No 8
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.54 E-value=2.8e-05 Score=71.74 Aligned_cols=186 Identities=10% Similarity=0.082 Sum_probs=134.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHHHHhhhhh
Q 023037 54 FKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNER 133 (288)
Q Consensus 54 ~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~~~~~~~~~~~~~~~~~~~~l~~i~~a~ner 133 (288)
...+.+.+..|...|+++++.+.|.+........-++..+++.+......+... +++.....|+.+.+.....++-+
T Consensus 35 a~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~---~~~~Ai~~~~~A~~~y~~~G~~~ 111 (282)
T PF14938_consen 35 ADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG---DPDEAIECYEKAIEIYREAGRFS 111 (282)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHHCT-HH
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh---CHHHHHHHHHHHHHHHHhcCcHH
Confidence 455667777888888888888888877776644455666666666655555443 35566778888888888888889
Q ss_pred hhHHhhhhHHHHHhhh-cchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 023037 134 LWFKTNLKLCKIWFDM-GEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (288)
Q Consensus 134 ~~f~~~~kL~~lyl~~-~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE~~~y~~~~n~~kak~~y~~A~~~a 212 (288)
+..++..++|.+|-+. |++++|.+.+++...+.+.. +.. ....+++.--..++..+++|.+|...|.+.-+..
T Consensus 112 ~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e---~~~---~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~ 185 (282)
T PF14938_consen 112 QAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQE---GSP---HSAAECLLKAADLYARLGRYEEAIEIYEEVAKKC 185 (282)
T ss_dssp HHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHT---T-H---HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC---CCh---hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 9999999999999999 99999999999999998765 333 6678888888999999999999999999876644
Q ss_pred ccCCChh-HHHHHHhhcchhhhhhccHHHHHHHHHHH
Q 023037 213 SAIPHPR-IMGIIRECGGKMHMAERQWADAATDFFEA 248 (288)
Q Consensus 213 ~~I~~p~-i~a~I~~~~G~l~~~ekdy~~A~syF~Ea 248 (288)
...+-.+ -....-+..|++|+..+|+-.|...|-+.
T Consensus 186 l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~ 222 (282)
T PF14938_consen 186 LENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERY 222 (282)
T ss_dssp CCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred hcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3333322 23345567899999999998876655443
No 9
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.51 E-value=2.2e-05 Score=79.82 Aligned_cols=55 Identities=15% Similarity=0.085 Sum_probs=35.5
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 023037 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (288)
Q Consensus 29 ~~d~~~Al~~f~~ii~~~~e~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~ 84 (288)
.+++++|++.|++.++....... ...++..+|.++..+|++++++..|++.+..-
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~-~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~ 361 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEK-EAIALNLRGTFKCLKGKHLEALADLSKSIELD 361 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 36677777777777765421122 23456677777777777777777777776654
No 10
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.48 E-value=3.8e-05 Score=70.86 Aligned_cols=198 Identities=13% Similarity=0.156 Sum_probs=144.1
Q ss_pred hhhhHHHHHHhhcc-c-CCCCHHHHHHHHHHhhcCCc--cchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhh
Q 023037 13 FTVSRVLCSILEKG-L-VETDPEGALAGFAEVVAMEP--EKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAV 88 (288)
Q Consensus 13 ~~~~~~~~y~~ak~-~-~~~d~~~Al~~f~~ii~~~~--e~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v 88 (288)
-.-++..+|-.|-. + ...++++|.+.|.+..+... .......+++.+.+.+|.+. ++++++++|++.+.+....-
T Consensus 30 ~~e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G 108 (282)
T PF14938_consen 30 DYEEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAG 108 (282)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcC
Confidence 34455556665443 2 46788999999999876532 23344678899999998777 99999999999999885556
Q ss_pred hhhhHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHHHHhhhhhhhHHhhhhHHHHHhhhcchhHHHHHHHHHHHhccC
Q 023037 89 TRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQR 168 (288)
Q Consensus 89 ~ka~~~k~i~~ild~~~~~~~~~~~~~~~~~~~~l~~i~~a~ner~~f~~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~ 168 (288)
....++++..++-..+.... .+++.....|+.+.+..+..+....-..+..++|.++...|+|++|.+++.++-+.+.+
T Consensus 109 ~~~~aA~~~~~lA~~ye~~~-~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~ 187 (282)
T PF14938_consen 109 RFSQAAKCLKELAEIYEEQL-GDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLE 187 (282)
T ss_dssp -HHHHHHHHHHHHHHHCCTT---HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCC
T ss_pred cHHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhc
Confidence 66788899988777776541 25778888889999888887766666699999999999999999999999999887654
Q ss_pred CCCCccccccchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCC
Q 023037 169 EDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH 217 (288)
Q Consensus 169 ~~~~dDk~~~~~llEv~~lE~~~y~~~~n~~kak~~y~~A~~~a~~I~~ 217 (288)
.+.. + ...=+.++--+-++...++...|+..+........+-.+
T Consensus 188 ~~l~--~---~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~ 231 (282)
T PF14938_consen 188 NNLL--K---YSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFAS 231 (282)
T ss_dssp HCTT--G---HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTT
T ss_pred cccc--c---hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Confidence 3211 1 223345555666888889999999999988776665555
No 11
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.46 E-value=2e-05 Score=80.14 Aligned_cols=156 Identities=11% Similarity=0.174 Sum_probs=101.4
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhccCC
Q 023037 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (288)
Q Consensus 29 ~~d~~~Al~~f~~ii~~~~e~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~~~~~~ 108 (288)
.+++++|+..|++++..+++. ..++..++.++...|+++++++++++.+..- +.-+. +...+-..... .
T Consensus 344 ~g~~~eA~~~~~kal~l~P~~----~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~-----~~~~lg~~~~~-~ 412 (615)
T TIGR00990 344 KGKHLEALADLSKSIELDPRV----TQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPD-----IYYHRAQLHFI-K 412 (615)
T ss_pred cCCHHHHHHHHHHHHHcCCCc----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-----HHHHHHHHHHH-c
Confidence 578889999999998876532 3466788999999999999999999887765 43222 22221111111 1
Q ss_pred CcchhhHHHHHHHHHHHHHHhhhhhhhHHhhhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHH
Q 023037 109 SQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIE 188 (288)
Q Consensus 109 ~~~~~~~~~~~~~~l~~i~~a~ner~~f~~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE 188 (288)
++.+.....++.+++. .. -.......+|.++...|+|++|...+++..+..+ ++ .+++..-
T Consensus 413 -g~~~~A~~~~~kal~l---~P---~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P-----~~-------~~~~~~l 473 (615)
T TIGR00990 413 -GEFAQAGKDYQKSIDL---DP---DFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFP-----EA-------PDVYNYY 473 (615)
T ss_pred -CCHHHHHHHHHHHHHc---Cc---cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-----CC-------hHHHHHH
Confidence 2233333333333322 11 1223456788888888888888888888877622 22 2566667
Q ss_pred HHHHHhhcCHHHHHHHHHHHHhhhcc
Q 023037 189 IQMYTETKNNKKLKQLYQKALAIKSA 214 (288)
Q Consensus 189 ~~~y~~~~n~~kak~~y~~A~~~a~~ 214 (288)
+.+|..+|++.+|...|.+|+.+...
T Consensus 474 g~~~~~~g~~~~A~~~~~~Al~l~p~ 499 (615)
T TIGR00990 474 GELLLDQNKFDEAIEKFDTAIELEKE 499 (615)
T ss_pred HHHHHHccCHHHHHHHHHHHHhcCCc
Confidence 88888888888888888888876543
No 12
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=98.37 E-value=2.2e-05 Score=68.05 Aligned_cols=127 Identities=13% Similarity=0.149 Sum_probs=112.8
Q ss_pred HhhhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCC
Q 023037 137 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP 216 (288)
Q Consensus 137 ~~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE~~~y~~~~n~~kak~~y~~A~~~a~~I~ 216 (288)
.....+|..|.+.|++++|.+.+.+.+..|..+ ...+++.+.-+++....+|+..+.....+|......-.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~---------~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~ 107 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSP---------GHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGG 107 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCH---------HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccc
Confidence 557789999999999999999999999997654 67899999999999999999999999999999999977
Q ss_pred ChhHHHHHHhhcchhhhhhccHHHHHHHHHHHHhhhh-----hhCChhHHHHhHHHHHHHHhc
Q 023037 217 HPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYD-----EAGNQRRIQCLKYLVLANMLM 274 (288)
Q Consensus 217 ~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EaF~~y~-----e~g~~~a~~~LKY~~L~~il~ 274 (288)
++.....+....|..++..|||++|-..|.++--.|. +.=+|+- +--|.+||.+++
T Consensus 108 d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~~~~~~~el~s~~d--~a~Y~~l~aLat 168 (177)
T PF10602_consen 108 DWERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTFTSLQYTELISYND--FAIYGGLCALAT 168 (177)
T ss_pred hHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCCCCCchhhhcCHHH--HHHHHHHHHHHh
Confidence 7899999999999999999999999999999987774 3334444 455999999987
No 13
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.36 E-value=4.3e-05 Score=77.95 Aligned_cols=205 Identities=13% Similarity=0.187 Sum_probs=115.0
Q ss_pred HHHhhccc-CCCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhh--------
Q 023037 20 CSILEKGL-VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTR-------- 90 (288)
Q Consensus 20 ~y~~ak~~-~~~d~~~Al~~f~~ii~~~~e~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~k-------- 90 (288)
.+..|+.. ..+++++|+..|++.+...++.. .+...+|.+|..+|+++++...+++++..- +.-..
T Consensus 25 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 99 (899)
T TIGR02917 25 LIEAAKSYLQKNKYKAAIIQLKNALQKDPNDA----EARFLLGKIYLALGDYAAAEKELRKALSLG-YPKNQVLPLLARA 99 (899)
T ss_pred HHHHHHHHHHcCChHhHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CChhhhHHHHHHH
Confidence 34456553 67899999999999998876544 466789999999999999999999987653 22110
Q ss_pred ----hhHHHHHHHHHHHhccCC-CcchhhHHH------------HHHHHHHHHHHhhh-hhhhHHhhhhHHHHHhhhcch
Q 023037 91 ----NYSEKCINNIMDFVSGSA-SQNFSLLRE------------FYQTTLKALEEAKN-ERLWFKTNLKLCKIWFDMGEY 152 (288)
Q Consensus 91 ----a~~~k~i~~ild~~~~~~-~~~~~~~~~------------~~~~~l~~i~~a~n-er~~f~~~~kL~~lyl~~~~y 152 (288)
...++.+.- +.... ..+...... .++.+.+.++.+-. ..........+|.+++..|+|
T Consensus 100 ~~~~g~~~~a~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~ 175 (899)
T TIGR02917 100 YLLQGKFQQVLDE----LPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRF 175 (899)
T ss_pred HHHCCCHHHHHHh----hcccccCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCH
Confidence 111111111 11110 000000000 11122222222110 111224456667777777777
Q ss_pred hHHHHHHHHHHHhccCCCCCccccccchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhHHHHHHhhcchhh
Q 023037 153 GRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMH 232 (288)
Q Consensus 153 ~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE~~~y~~~~n~~kak~~y~~A~~~a~~I~~p~i~a~I~~~~G~l~ 232 (288)
++|..+++++.+..+ ++ .+.+..-+.++...+++.+|...|.++...... +|. .....|.++
T Consensus 176 ~~A~~~~~~~~~~~~-----~~-------~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~--~~~----~~~~~~~~~ 237 (899)
T TIGR02917 176 DEARALIDEVLTADP-----GN-------VDALLLKGDLLLSLGNIELALAAYRKAIALRPN--NPA----VLLALATIL 237 (899)
T ss_pred HHHHHHHHHHHHhCC-----CC-------hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC--CHH----HHHHHHHHH
Confidence 777777776655521 11 144555566777777777777777777654211 122 233446666
Q ss_pred hhhccHHHHHHHHHHHHhh
Q 023037 233 MAERQWADAATDFFEAFKN 251 (288)
Q Consensus 233 ~~ekdy~~A~syF~EaF~~ 251 (288)
+..|+|+.|...|-.+.+.
T Consensus 238 ~~~g~~~~A~~~~~~~~~~ 256 (899)
T TIGR02917 238 IEAGEFEEAEKHADALLKK 256 (899)
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 7777777777776666554
No 14
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.36 E-value=0.00017 Score=71.99 Aligned_cols=237 Identities=22% Similarity=0.226 Sum_probs=175.6
Q ss_pred CCCCHHHHHHHHHHhhcCCc----cchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhh--hhHHHHHHHHH
Q 023037 28 VETDPEGALAGFAEVVAMEP----EKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTR--NYSEKCINNIM 101 (288)
Q Consensus 28 ~~~d~~~Al~~f~~ii~~~~----e~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~k--a~~~k~i~~il 101 (288)
..++.+.|+..++..++.-. -+.......++.++.+|..+++++++..+|++.++..+...+. ..++-.++++=
T Consensus 211 ~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa 290 (508)
T KOG1840|consen 211 VQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLA 290 (508)
T ss_pred HhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 45778889999988887621 1223356777789999999999999999999999999654432 22333444433
Q ss_pred HHhccCCCcchhhHHHHHHHHHHHHHH--hhhhhhhHHhhhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccc
Q 023037 102 DFVSGSASQNFSLLREFYQTTLKALEE--AKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGS 179 (288)
Q Consensus 102 d~~~~~~~~~~~~~~~~~~~~l~~i~~--a~ner~~f~~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~ 179 (288)
..+... ..++.....++.++++.+. ..+....-...+.++.++-.+++|+++..+++...++....++.++ .
T Consensus 291 ~ly~~~--GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~----~ 364 (508)
T KOG1840|consen 291 VLYYKQ--GKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDN----V 364 (508)
T ss_pred HHHhcc--CChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccc----h
Confidence 333222 3455667777777776665 2255666688889999999999999999999999999887666544 5
Q ss_pred hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccC-CC-hhHHHHHHhhcchhhhhhccHHHHHHHHHHHHhhhhhhCC
Q 023037 180 QLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAI-PH-PRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGN 257 (288)
Q Consensus 180 ~llEv~~lE~~~y~~~~n~~kak~~y~~A~~~a~~I-~~-p~i~a~I~~~~G~l~~~ekdy~~A~syF~EaF~~y~e~g~ 257 (288)
.+..++.--+.+|...|++..|...|.+|.++...- .+ -.-.|..--+-|..+.+.++|..|..-|-||+.-..+.|.
T Consensus 365 ~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~ 444 (508)
T KOG1840|consen 365 NLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGP 444 (508)
T ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCC
Confidence 788999999999999999999999999999998743 32 3444555556678888999999999999999999977774
Q ss_pred --hhHHHHhHHHHHHHH
Q 023037 258 --QRRIQCLKYLVLANM 272 (288)
Q Consensus 258 --~~a~~~LKY~~L~~i 272 (288)
|.-... |.=||..
T Consensus 445 ~~~~~~~~--~~nL~~~ 459 (508)
T KOG1840|consen 445 DHPDVTYT--YLNLAAL 459 (508)
T ss_pred CCCchHHH--HHHHHHH
Confidence 333333 4444443
No 15
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.34 E-value=1.9e-05 Score=65.51 Aligned_cols=123 Identities=23% Similarity=0.287 Sum_probs=95.7
Q ss_pred CCCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhccC
Q 023037 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGS 107 (288)
Q Consensus 28 ~~~d~~~Al~~f~~ii~~~~e~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~~~~~ 107 (288)
..+++..+.+.+..++...++ +.+...+...++++++..|+++++.+.|+.++.-.
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~-s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~----------------------- 78 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPS-SPYAALAALQLAKAAYEQGDYDEAKAALEKALANA----------------------- 78 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-----------------------
Confidence 477888888889999887543 34567788899999999999999999998765432
Q ss_pred CCcchhhHHHHHHHHHHHHHHhhhhhhhHHhhhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHH
Q 023037 108 ASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAI 187 (288)
Q Consensus 108 ~~~~~~~~~~~~~~~l~~i~~a~ner~~f~~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~l 187 (288)
++ ..+.--..++|+.++++.|+|+++...|+.+ .+. .+--.++.+
T Consensus 79 ~d----------------------~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~----------~~~---~~~~~~~~~ 123 (145)
T PF09976_consen 79 PD----------------------PELKPLARLRLARILLQQGQYDEALATLQQI----------PDE---AFKALAAEL 123 (145)
T ss_pred CC----------------------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc----------cCc---chHHHHHHH
Confidence 11 1111124568999999999999999988663 333 555668889
Q ss_pred HHHHHHhhcCHHHHHHHHHHHH
Q 023037 188 EIQMYTETKNNKKLKQLYQKAL 209 (288)
Q Consensus 188 E~~~y~~~~n~~kak~~y~~A~ 209 (288)
.+.+|...|++.+|+.+|.+|+
T Consensus 124 ~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 124 LGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHCCCHHHHHHHHHHhC
Confidence 9999999999999999999874
No 16
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.30 E-value=0.00019 Score=60.96 Aligned_cols=172 Identities=10% Similarity=0.005 Sum_probs=118.4
Q ss_pred hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHHHHh
Q 023037 50 AEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEA 129 (288)
Q Consensus 50 ~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~~~~~~~~~~~~~~~~~~~~l~~i~~a 129 (288)
......++.+++..|...|+++++.+.+++.+... +.... ....+-..... . .+.+.....++.+++. .
T Consensus 27 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~-----~~~~la~~~~~-~-~~~~~A~~~~~~al~~---~ 95 (234)
T TIGR02521 27 RNKAAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYL-----AYLALALYYQQ-L-GELEKAEDSFRRALTL---N 95 (234)
T ss_pred CCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHH-----HHHHHHHHHHH-c-CCHHHHHHHHHHHHhh---C
Confidence 44567889999999999999999999999987765 43222 11111111111 1 2233444444444432 2
Q ss_pred hhhhhhHHhhhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Q 023037 130 KNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKAL 209 (288)
Q Consensus 130 ~ner~~f~~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE~~~y~~~~n~~kak~~y~~A~ 209 (288)
.+ ......+++.++...|+|+++...+++...... . ....+++..-+.+|...+++.+|...+.++.
T Consensus 96 ~~---~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~-------~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 162 (234)
T TIGR02521 96 PN---NGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPL-------Y---PQPARSLENAGLCALKAGDFDKAEKYLTRAL 162 (234)
T ss_pred CC---CHHHHHHHHHHHHHcccHHHHHHHHHHHHhccc-------c---ccchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 11 124667889999999999999999999876511 1 1223445556888999999999999999998
Q ss_pred hhhccCCChhHHHHHHhhcchhhhhhccHHHHHHHHHHHHhh
Q 023037 210 AIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (288)
Q Consensus 210 ~~a~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EaF~~ 251 (288)
..... +|. ....-|.++...++|+.|..+|-++.+.
T Consensus 163 ~~~~~--~~~----~~~~la~~~~~~~~~~~A~~~~~~~~~~ 198 (234)
T TIGR02521 163 QIDPQ--RPE----SLLELAELYYLRGQYKDARAYLERYQQT 198 (234)
T ss_pred HhCcC--ChH----HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 76432 232 3445688999999999999999988776
No 17
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.25 E-value=0.00016 Score=73.84 Aligned_cols=188 Identities=17% Similarity=0.115 Sum_probs=115.9
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhccCC
Q 023037 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (288)
Q Consensus 29 ~~d~~~Al~~f~~ii~~~~e~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~~~~~~ 108 (288)
.+++++|++.|.++++.+++. ..++..++.++...|+++++.+++.+.+... +.-....... . .... ..
T Consensus 138 ~~~~~~A~~~~~~a~~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~---~--~~~~-~~ 206 (899)
T TIGR02917 138 LGQLELAQKSYEQALAIDPRS----LYAKLGLAQLALAENRFDEARALIDEVLTAD-PGNVDALLLK---G--DLLL-SL 206 (899)
T ss_pred cCCHHHHHHHHHHHHhcCCCC----hhhHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHH---H--HHHH-hc
Confidence 567777777777777665432 2355677777777788888877777776654 3221111111 1 1010 01
Q ss_pred CcchhhHHHHHHHHHHHHHHhhhhhhhHHhhhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHH
Q 023037 109 SQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIE 188 (288)
Q Consensus 109 ~~~~~~~~~~~~~~l~~i~~a~ner~~f~~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE 188 (288)
++.+.....++.+++ ... ....+...++.+++..|+|++|...+..+.+..+. +. +++...
T Consensus 207 -g~~~~A~~~~~~a~~---~~p---~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~-------~~~~~~ 267 (899)
T TIGR02917 207 -GNIELALAAYRKAIA---LRP---NNPAVLLALATILIEAGEFEEAEKHADALLKKAPN-----SP-------LAHYLK 267 (899)
T ss_pred -CCHHHHHHHHHHHHh---hCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----Cc-------hHHHHH
Confidence 122233333333322 111 12245667888999999999999998888876322 11 345556
Q ss_pred HHHHHhhcCHHHHHHHHHHHHhhhccCCChhHHHHHHhhcchhhhhhccHHHHHHHHHHHHhhh
Q 023037 189 IQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (288)
Q Consensus 189 ~~~y~~~~n~~kak~~y~~A~~~a~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EaF~~y 252 (288)
+.++...+++.+|...+.++......-.. .....|.++...|+|+.|..+|-.+.+..
T Consensus 268 ~~~~~~~~~~~~A~~~~~~~l~~~~~~~~------~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 325 (899)
T TIGR02917 268 ALVDFQKKNYEDARETLQDALKSAPEYLP------ALLLAGASEYQLGNLEQAYQYLNQILKYA 325 (899)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCCchh------HHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 77788889999999999988775432211 12345778888899999999888887653
No 18
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.18 E-value=2.6e-05 Score=78.32 Aligned_cols=60 Identities=20% Similarity=0.181 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCC-hhHHHHHHhhcchhhhhhccHHHHH
Q 023037 183 EVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH-PRIMGIIRECGGKMHMAERQWADAA 242 (288)
Q Consensus 183 Ev~~lE~~~y~~~~n~~kak~~y~~A~~~a~~I~~-p~i~a~I~~~~G~l~~~ekdy~~A~ 242 (288)
+-+..-.-+|..++|+.+|...|..|+.|+-.-.+ -.-+|...-.-|++-.--.+|..|.
T Consensus 389 aa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI 449 (966)
T KOG4626|consen 389 AAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAI 449 (966)
T ss_pred hhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444 3334444333344444334444433
No 19
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.17 E-value=0.00012 Score=73.80 Aligned_cols=156 Identities=15% Similarity=0.213 Sum_probs=104.3
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhccCC
Q 023037 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (288)
Q Consensus 29 ~~d~~~Al~~f~~ii~~~~e~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~~~~~~ 108 (288)
.++.+-||+.|++.++.++. -..|+.+|+..+...|+..++.++|.+.|.+. +. -+.+++|+=.....-
T Consensus 299 qG~ldlAI~~Ykral~~~P~----F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~-----hadam~NLgni~~E~- 367 (966)
T KOG4626|consen 299 QGLLDLAIDTYKRALELQPN----FPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PN-----HADAMNNLGNIYREQ- 367 (966)
T ss_pred cccHHHHHHHHHHHHhcCCC----chHHHhHHHHHHHhccchHHHHHHHHHHHHhC-Cc-----cHHHHHHHHHHHHHh-
Confidence 45668888999888887652 24677888888888899999999998888887 54 345666632222211
Q ss_pred CcchhhHHHHHHHHHHHHHHhhhhhhhHHhhhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHH
Q 023037 109 SQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIE 188 (288)
Q Consensus 109 ~~~~~~~~~~~~~~l~~i~~a~ner~~f~~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE 188 (288)
...+....+|..+++..-. ..-...+||.+|-++|++++|...++|..++- ....+.+..-
T Consensus 368 -~~~e~A~~ly~~al~v~p~------~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~------------P~fAda~~Nm 428 (966)
T KOG4626|consen 368 -GKIEEATRLYLKALEVFPE------FAAAHNNLASIYKQQGNLDDAIMCYKEALRIK------------PTFADALSNM 428 (966)
T ss_pred -ccchHHHHHHHHHHhhChh------hhhhhhhHHHHHHhcccHHHHHHHHHHHHhcC------------chHHHHHHhc
Confidence 2233556666666664221 12456789999999999999999999998882 2334555555
Q ss_pred HHHHHhhcCHHHHHHHHHHHHhhhcc
Q 023037 189 IQMYTETKNNKKLKQLYQKALAIKSA 214 (288)
Q Consensus 189 ~~~y~~~~n~~kak~~y~~A~~~a~~ 214 (288)
+..|..+++...|.+.|++|..+.-+
T Consensus 429 Gnt~ke~g~v~~A~q~y~rAI~~nPt 454 (966)
T KOG4626|consen 429 GNTYKEMGDVSAAIQCYTRAIQINPT 454 (966)
T ss_pred chHHHHhhhHHHHHHHHHHHHhcCcH
Confidence 66666666666666666665554433
No 20
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.13 E-value=0.00068 Score=59.93 Aligned_cols=175 Identities=13% Similarity=0.133 Sum_probs=111.4
Q ss_pred HHhhccc-CCCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhh---hhHHHH
Q 023037 21 SILEKGL-VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTR---NYSEKC 96 (288)
Q Consensus 21 y~~ak~~-~~~d~~~Al~~f~~ii~~~~e~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~k---a~~~k~ 96 (288)
|..|... ..++++.|+..|++++...++. .|...+...+|.+|...|+++++++.|++++... |.-+. +..-..
T Consensus 37 ~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~~g 114 (235)
T TIGR03302 37 YEEAKEALDSGDYTEAIKYFEALESRYPFS-PYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH-PNHPDADYAYYLRG 114 (235)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCchHHHHHHHH
Confidence 4444443 5689999999999999887643 4566889999999999999999999999998877 53221 110000
Q ss_pred HHHHHHHhccCCCcchhhHHHHHHHHHHHHHHhhhh-hhh-------------HHhhhhHHHHHhhhcchhHHHHHHHHH
Q 023037 97 INNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE-RLW-------------FKTNLKLCKIWFDMGEYGRMSKILKEL 162 (288)
Q Consensus 97 i~~ild~~~~~~~~~~~~~~~~~~~~l~~i~~a~ne-r~~-------------f~~~~kL~~lyl~~~~y~~~~~ll~el 162 (288)
... ...+... ..+......-++...+.++...+. ..+ -.....+|.+|+..|+|.++...++++
T Consensus 115 ~~~-~~~~~~~-~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a 192 (235)
T TIGR03302 115 LSN-YNQIDRV-DRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETV 192 (235)
T ss_pred HHH-HHhcccc-cCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 000 0000000 000111222222222222211111 000 022357899999999999999999999
Q ss_pred HHhccCCCCCccccccchHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Q 023037 163 HKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKA 208 (288)
Q Consensus 163 kk~~~~~~~~dDk~~~~~llEv~~lE~~~y~~~~n~~kak~~y~~A 208 (288)
.+.+++. ....+.+..-+.+|..+|++.+|...+...
T Consensus 193 l~~~p~~---------~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l 229 (235)
T TIGR03302 193 VENYPDT---------PATEEALARLVEAYLKLGLKDLAQDAAAVL 229 (235)
T ss_pred HHHCCCC---------cchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8885532 445688899999999999999999877664
No 21
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.07 E-value=0.00034 Score=67.84 Aligned_cols=193 Identities=19% Similarity=0.218 Sum_probs=116.5
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHH----HHHHHHHHHh
Q 023037 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSE----KCINNIMDFV 104 (288)
Q Consensus 29 ~~d~~~Al~~f~~ii~~~~e~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~----k~i~~ild~~ 104 (288)
.++++.|++.++..++..|+.. .++..++.+|..+|+++++.+.+..++..- . .+..... ......++..
T Consensus 166 ~~~~~~Al~~l~~l~~~~P~~~----~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~-~-~~~~~~~~l~~~a~~~~l~~~ 239 (409)
T TIGR00540 166 QNELHAARHGVDKLLEMAPRHK----EVLKLAEEAYIRSGAWQALDDIIDNMAKAG-L-FDDEEFADLEQKAEIGLLDEA 239 (409)
T ss_pred CCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHHhhHHHHHHHHHHHHHcC-C-CCHHHHHHHHHHHHHHHHHHH
Confidence 5667777777777777665433 356677788888888888887777776542 1 1111111 1111111111
Q ss_pred ccCCCcchhhHHHHHHHHHHHHHHhh-hhhhhHHhhhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHH
Q 023037 105 SGSASQNFSLLREFYQTTLKALEEAK-NERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLE 183 (288)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~l~~i~~a~-ner~~f~~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llE 183 (288)
.. +.-.+......+... ..|.-..+...++.++...|++++|.+++++..+..+ |+. ...+
T Consensus 240 ~~---------~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~p-----d~~---~~~~- 301 (409)
T TIGR00540 240 MA---------DEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLG-----DDR---AISL- 301 (409)
T ss_pred HH---------hcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCC-----Ccc---cchh-
Confidence 00 000112222222111 2234567888999999999999999999999998733 222 1111
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCC-hhHHHHHHhhcchhhhhhccHHHHHHHHH--HHHhh
Q 023037 184 VYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH-PRIMGIIRECGGKMHMAERQWADAATDFF--EAFKN 251 (288)
Q Consensus 184 v~~lE~~~y~~~~n~~kak~~y~~A~~~a~~I~~-p~i~a~I~~~~G~l~~~ekdy~~A~syF~--EaF~~ 251 (288)
..+..-.....+|..++.....++++ .-|+ |. +.+..+-|.+++..|+|.+|..||- .+++.
T Consensus 302 -~~l~~~~~l~~~~~~~~~~~~e~~lk---~~p~~~~--~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~ 366 (409)
T TIGR00540 302 -PLCLPIPRLKPEDNEKLEKLIEKQAK---NVDDKPK--CCINRALGQLLMKHGEFIEAADAFKNVAACKE 366 (409)
T ss_pred -HHHHHhhhcCCCChHHHHHHHHHHHH---hCCCChh--HHHHHHHHHHHHHcccHHHHHHHHHHhHHhhc
Confidence 12232233345777888888777764 3455 54 6677888999999999999999888 46553
No 22
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.06 E-value=0.0002 Score=78.26 Aligned_cols=203 Identities=12% Similarity=0.083 Sum_probs=133.0
Q ss_pred CCCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhh-hHHHHHHH-------
Q 023037 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRN-YSEKCINN------- 99 (288)
Q Consensus 28 ~~~d~~~Al~~f~~ii~~~~e~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka-~~~k~i~~------- 99 (288)
..+++++|+..|++++..+++. ..++..++.+|.++|+++++.++|++.+... +..... +....+..
T Consensus 281 ~~g~~~~A~~~l~~aL~~~P~~----~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~-p~~~~~~~~~~ll~~~~~~~~~ 355 (1157)
T PRK11447 281 DSGQGGKAIPELQQAVRANPKD----SEALGALGQAYSQQGDRARAVAQFEKALALD-PHSSNRDKWESLLKVNRYWLLI 355 (1157)
T ss_pred HCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCccchhHHHHHHHhhhHHHHH
Confidence 4688999999999999987643 3567899999999999999999999998876 432211 11111110
Q ss_pred -HHHHhccCCCcchhhHHHHHHHHHHHHHHhhhhhhhHHhhhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCcccccc
Q 023037 100 -IMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKG 178 (288)
Q Consensus 100 -ild~~~~~~~~~~~~~~~~~~~~l~~i~~a~ner~~f~~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~ 178 (288)
.-+.... . .+.+.....++.++ +-..+ .......||.+|...|++++|.+.++++.+.-+.. .+-..+
T Consensus 356 ~~g~~~~~-~-g~~~eA~~~~~~Al---~~~P~---~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~---~~a~~~ 424 (1157)
T PRK11447 356 QQGDAALK-A-NNLAQAERLYQQAR---QVDNT---DSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGN---TNAVRG 424 (1157)
T ss_pred HHHHHHHH-C-CCHHHHHHHHHHHH---HhCCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHH
Confidence 0000100 1 22323333333333 32221 22456788999999999999999999988873321 110000
Q ss_pred ---------------------------------chHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhHHHHHH
Q 023037 179 ---------------------------------SQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIR 225 (288)
Q Consensus 179 ---------------------------------~~llEv~~lE~~~y~~~~n~~kak~~y~~A~~~a~~I~~p~i~a~I~ 225 (288)
.+-.+.+..+..++...+++.+|.+.|.+|+.+... +|. +.
T Consensus 425 L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~--~~~----~~ 498 (1157)
T PRK11447 425 LANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG--SVW----LT 498 (1157)
T ss_pred HHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--CHH----HH
Confidence 011233445667788899999999999999987532 133 44
Q ss_pred hhcchhhhhhccHHHHHHHHHHHHhhh
Q 023037 226 ECGGKMHMAERQWADAATDFFEAFKNY 252 (288)
Q Consensus 226 ~~~G~l~~~ekdy~~A~syF~EaF~~y 252 (288)
..-|.++...|+++.|...|-++.+..
T Consensus 499 ~~LA~~~~~~G~~~~A~~~l~~al~~~ 525 (1157)
T PRK11447 499 YRLAQDLRQAGQRSQADALMRRLAQQK 525 (1157)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 566888999999999999999988743
No 23
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.00 E-value=0.00043 Score=58.94 Aligned_cols=133 Identities=15% Similarity=0.124 Sum_probs=100.7
Q ss_pred HhhhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCC
Q 023037 137 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP 216 (288)
Q Consensus 137 ~~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE~~~y~~~~n~~kak~~y~~A~~~a~~I~ 216 (288)
....++|..|...|+|++|...++++.+....+ .....++...+.+|...|++.+|..+|.+|+.+.....
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~---------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 106 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDP---------NDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQP 106 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc---------chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Confidence 467899999999999999999999998873221 22346788889999999999999999999998755433
Q ss_pred C-hhHHHHHHhhcchhhhhhccHHHHHHHHHHHHhhhhhhC--Chh-HHHHhHHHHHHHHhcCCCCCCC
Q 023037 217 H-PRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAG--NQR-RIQCLKYLVLANMLMESEVNPF 281 (288)
Q Consensus 217 ~-p~i~a~I~~~~G~l~~~ekdy~~A~syF~EaF~~y~e~g--~~~-a~~~LKY~~L~~il~~~~~dpF 281 (288)
. -...|.+....|......+++..|..+|.+|.+.+..+- +|. -+.++.++ +....+.||++
T Consensus 107 ~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~~~~~~~~---~~~~~~~~~~~ 172 (172)
T PRK02603 107 SALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNYIEAQNWL---KTTGRSNIDVY 172 (172)
T ss_pred HHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHH---HhcCccccCcC
Confidence 3 345677888888888888999999999999999988754 443 33444443 33345566653
No 24
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.97 E-value=0.0024 Score=64.19 Aligned_cols=242 Identities=20% Similarity=0.178 Sum_probs=156.9
Q ss_pred hhhHHHHHHhhcccCCCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhh-
Q 023037 14 TVSRVLCSILEKGLVETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNY- 92 (288)
Q Consensus 14 ~~~~~~~y~~ak~~~~~d~~~Al~~f~~ii~~~~e~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~- 92 (288)
+-|++.+|..-=-...+++++|++.+.+.-..-.|+..| +...+.++.+.|++++|...|+.++.-. |. +..+
T Consensus 2 E~SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~----~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pd-n~~Yy 75 (517)
T PF12569_consen 2 EHSELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAV----LEKRAELLLKLGRKEEAEKIYRELIDRN-PD-NYDYY 75 (517)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHH----HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CC-cHHHH
Confidence 456777776532234689999999998765443355555 4478999999999999999999998766 42 1111
Q ss_pred ----------------HHHHHHHHHHHhccC-CC--------cchhhHHHHHHHHHHHHHHhhhhhhhHHhhhhHHHHHh
Q 023037 93 ----------------SEKCINNIMDFVSGS-AS--------QNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWF 147 (288)
Q Consensus 93 ----------------~~k~i~~ild~~~~~-~~--------~~~~~~~~~~~~~l~~i~~a~ner~~f~~~~kL~~lyl 147 (288)
..+....+++.+..- |. -+.-.-+.|-..+.+++... -.|.+=.+-.+|-.||-
T Consensus 76 ~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~-l~KgvPslF~~lk~Ly~ 154 (517)
T PF12569_consen 76 RGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQ-LRKGVPSLFSNLKPLYK 154 (517)
T ss_pred HHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHH-HhcCCchHHHHHHHHHc
Confidence 123333334433221 11 00001123333444444333 12333366667778888
Q ss_pred hhcchhHHHHHHHHHHHhccCCCC---Cc--cccccchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCC-hhHH
Q 023037 148 DMGEYGRMSKILKELHKSCQREDG---TD--DQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH-PRIM 221 (288)
Q Consensus 148 ~~~~y~~~~~ll~elkk~~~~~~~---~d--Dk~~~~~llEv~~lE~~~y~~~~n~~kak~~y~~A~~~a~~I~~-p~i~ 221 (288)
+..+..-+..++.+....++..+. .+ .+...+.++=++..-++.|-.+|++.+|.....+| |-| |.+
T Consensus 155 d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~a------I~htPt~- 227 (517)
T PF12569_consen 155 DPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKA------IEHTPTL- 227 (517)
T ss_pred ChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHH------HhcCCCc-
Confidence 777766677777777665433211 11 11122677889999999999999999888887765 556 654
Q ss_pred HHHHhhcchhhhhhccHHHHHHHHHHHHhhhhhhCChhHHHHhHHHHHH
Q 023037 222 GIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLA 270 (288)
Q Consensus 222 a~I~~~~G~l~~~ekdy~~A~syF~EaF~~y~e~g~~~a~~~LKY~~L~ 270 (288)
....+.-|+++-+.||+..|....-+| +..|-++..--.+|-|||+=|
T Consensus 228 ~ely~~KarilKh~G~~~~Aa~~~~~A-r~LD~~DRyiNsK~aKy~LRa 275 (517)
T PF12569_consen 228 VELYMTKARILKHAGDLKEAAEAMDEA-RELDLADRYINSKCAKYLLRA 275 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHH-HhCChhhHHHHHHHHHHHHHC
Confidence 578889999999999999998876555 555666666777899999854
No 25
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=97.95 E-value=0.0013 Score=71.94 Aligned_cols=53 Identities=11% Similarity=0.093 Sum_probs=45.2
Q ss_pred CCCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 023037 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (288)
Q Consensus 28 ~~~d~~~Al~~f~~ii~~~~e~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~ 84 (288)
..+++++|++.|++.+..+++.. | +...++.+|.+.|+++++...+++++...
T Consensus 473 ~~g~~~eA~~~~~~Al~~~P~~~-~---~~~~LA~~~~~~G~~~~A~~~l~~al~~~ 525 (1157)
T PRK11447 473 NQGKWAQAAELQRQRLALDPGSV-W---LTYRLAQDLRQAGQRSQADALMRRLAQQK 525 (1157)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCH-H---HHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 46899999999999999887532 2 56789999999999999999999987754
No 26
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.95 E-value=0.00051 Score=56.87 Aligned_cols=96 Identities=16% Similarity=0.220 Sum_probs=78.0
Q ss_pred HhhhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCC
Q 023037 137 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP 216 (288)
Q Consensus 137 ~~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE~~~y~~~~n~~kak~~y~~A~~~a~~I~ 216 (288)
...+.+|..+++.|+|+++...++++.... .|. .+--.+.+--.+++...+++.+|...+.. +.
T Consensus 49 ~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~------~d~---~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-------~~ 112 (145)
T PF09976_consen 49 LAALQLAKAAYEQGDYDEAKAALEKALANA------PDP---ELKPLARLRLARILLQQGQYDEALATLQQ-------IP 112 (145)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhC------CCH---HHHHHHHHHHHHHHHHcCCHHHHHHHHHh-------cc
Confidence 456789999999999999999999998862 122 33334455568889999999999998854 55
Q ss_pred ChhHHHHHHhhcchhhhhhccHHHHHHHHHHH
Q 023037 217 HPRIMGIIRECGGKMHMAERQWADAATDFFEA 248 (288)
Q Consensus 217 ~p~i~a~I~~~~G~l~~~ekdy~~A~syF~Ea 248 (288)
.+...+...+.-|.++...||++.|...|-.|
T Consensus 113 ~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 113 DEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred CcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 56678889999999999999999999998776
No 27
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.95 E-value=0.0011 Score=60.24 Aligned_cols=178 Identities=9% Similarity=0.092 Sum_probs=122.0
Q ss_pred HHHHHhhccc-CCCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHH
Q 023037 18 VLCSILEKGL-VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKC 96 (288)
Q Consensus 18 ~~~y~~ak~~-~~~d~~~Al~~f~~ii~~~~e~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~ 96 (288)
-..|..|... ..+|+++|++.|+++++..|. +.+..++...++.+|.+.|++++++..+++++... |.-++..-+--
T Consensus 33 ~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~-s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~-P~~~~~~~a~Y 110 (243)
T PRK10866 33 SEIYATAQQKLQDGNWKQAITQLEALDNRYPF-GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-PTHPNIDYVLY 110 (243)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-cCCCchHHHHH
Confidence 3456667665 569999999999999997664 47788999999999999999999999999999988 75444332222
Q ss_pred HHHH---------HHHhccCC--CcchhhHHHHHHHHHHHHHHhh--------hhhh------hHHhhhhHHHHHhhhcc
Q 023037 97 INNI---------MDFVSGSA--SQNFSLLREFYQTTLKALEEAK--------NERL------WFKTNLKLCKIWFDMGE 151 (288)
Q Consensus 97 i~~i---------ld~~~~~~--~~~~~~~~~~~~~~l~~i~~a~--------ner~------~f~~~~kL~~lyl~~~~ 151 (288)
+..+ ++.+-.++ +.+......-++...+.++.-. ..|+ ..+-++..|..|+..|.
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~ 190 (243)
T PRK10866 111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGA 190 (243)
T ss_pred HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 2222 11121121 1334444555555555555311 1111 11557789999999999
Q ss_pred hhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHHHHHHHhhcCHHHHHHHHH
Q 023037 152 YGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQ 206 (288)
Q Consensus 152 y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE~~~y~~~~n~~kak~~y~ 206 (288)
|..|..=.+.+.+.-+.. ...-|...+-.+.|..+|....++....
T Consensus 191 y~AA~~r~~~v~~~Yp~t---------~~~~eal~~l~~ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 191 YVAVVNRVEQMLRDYPDT---------QATRDALPLMENAYRQLQLNAQADKVAK 236 (243)
T ss_pred hHHHHHHHHHHHHHCCCC---------chHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 988766666665543322 5566888899999999999888877554
No 28
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.94 E-value=0.0016 Score=61.39 Aligned_cols=197 Identities=16% Similarity=0.182 Sum_probs=114.9
Q ss_pred HHHhhcc-cCCCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Q 023037 20 CSILEKG-LVETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCIN 98 (288)
Q Consensus 20 ~y~~ak~-~~~~d~~~Al~~f~~ii~~~~e~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~ 98 (288)
-|+..=+ +.+..|++|++.|.+++..+++ .|.+-..||.++++.|..|.|+..-+.++.- |..|-+.-.-.+-
T Consensus 38 ~Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~----t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s--pdlT~~qr~lAl~ 111 (389)
T COG2956 38 DYVKGLNFLLSNQPDKAVDLFLEMLQEDPE----TFEAHLTLGNLFRSRGEVDRAIRIHQTLLES--PDLTFEQRLLALQ 111 (389)
T ss_pred HHHhHHHHHhhcCcchHHHHHHHHHhcCch----hhHHHHHHHHHHHhcchHHHHHHHHHHHhcC--CCCchHHHHHHHH
Confidence 4555444 3688999999999999987654 4666678999999999999999988776542 2333222222222
Q ss_pred HHHHHhccCCCcchhhHHHHHHHHHHHHHHhhhhhhhH-HhhhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccc
Q 023037 99 NIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWF-KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKK 177 (288)
Q Consensus 99 ~ild~~~~~~~~~~~~~~~~~~~~l~~i~~a~ner~~f-~~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~ 177 (288)
.+=..+..+ + .++..=++....++ +.-.. ..--.|..+|=..+++.+|...-.++.++ +++..
T Consensus 112 qL~~Dym~a-G----l~DRAE~~f~~L~d----e~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~-------~~q~~ 175 (389)
T COG2956 112 QLGRDYMAA-G----LLDRAEDIFNQLVD----EGEFAEGALQQLLNIYQATREWEKAIDVAERLVKL-------GGQTY 175 (389)
T ss_pred HHHHHHHHh-h----hhhHHHHHHHHHhc----chhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHc-------CCccc
Confidence 211111100 0 11111111122111 10000 22235677777888888888888888777 55533
Q ss_pred cchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhHHHHHHhhcchhhhhhccHHHHHHH
Q 023037 178 GSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATD 244 (288)
Q Consensus 178 ~~~llEv~~lE~~~y~~~~n~~kak~~y~~A~~~a~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~sy 244 (288)
+..+...|---.+-+...+|..+|+..+.+|++....-. -| -.+-|.+++..|+|..|..-
T Consensus 176 ~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cv----RA--si~lG~v~~~~g~y~~AV~~ 236 (389)
T COG2956 176 RVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCV----RA--SIILGRVELAKGDYQKAVEA 236 (389)
T ss_pred hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccce----eh--hhhhhHHHHhccchHHHHHH
Confidence 344444444446666666778888888888776543211 11 12346677777777777543
No 29
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=97.86 E-value=0.002 Score=56.84 Aligned_cols=171 Identities=13% Similarity=0.166 Sum_probs=118.4
Q ss_pred hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHHHHh
Q 023037 50 AEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEA 129 (288)
Q Consensus 50 ~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~~~~~~~~~~~~~~~~~~~~l~~i~~a 129 (288)
.++....+.++|..+.+.|+++++...+++++... +.- +
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~-------------------~--------------------- 67 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFS-------------------P--------------------- 67 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCc-------------------h---------------------
Confidence 45567889999999999999999999988876655 310 0
Q ss_pred hhhhhhHHhhhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHHHHHHHhh--------cCHHHH
Q 023037 130 KNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTET--------KNNKKL 201 (288)
Q Consensus 130 ~ner~~f~~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE~~~y~~~--------~n~~ka 201 (288)
..-.....+|.+|+..|++++|...++++.+..++. ....+.+..-+.+|... +++.+|
T Consensus 68 ----~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~---------~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A 134 (235)
T TIGR03302 68 ----YAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNH---------PDADYAYYLRGLSNYNQIDRVDRDQTAAREA 134 (235)
T ss_pred ----hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC---------CchHHHHHHHHHHHHHhcccccCCHHHHHHH
Confidence 001234677899999999999999999999884432 22234455556666554 778889
Q ss_pred HHHHHHHHhhhccCCC-hhHHHHH----------HhhcchhhhhhccHHHHHHHHHHHHhhhhhhCChhHHHHhHHHHHH
Q 023037 202 KQLYQKALAIKSAIPH-PRIMGII----------RECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLA 270 (288)
Q Consensus 202 k~~y~~A~~~a~~I~~-p~i~a~I----------~~~~G~l~~~ekdy~~A~syF~EaF~~y~e~g~~~a~~~LKY~~L~ 270 (288)
...|.++......-.. +.....+ ....|.+|+..|+|..|...|-++.+.|.. +|....++-.+..+
T Consensus 135 ~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~a~~~l~~~ 212 (235)
T TIGR03302 135 FEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPD--TPATEEALARLVEA 212 (235)
T ss_pred HHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCC--CcchHHHHHHHHHH
Confidence 9999888765433222 3222221 234578899999999999999999988754 35445555555555
Q ss_pred HHhcCC
Q 023037 271 NMLMES 276 (288)
Q Consensus 271 ~il~~~ 276 (288)
...++.
T Consensus 213 ~~~lg~ 218 (235)
T TIGR03302 213 YLKLGL 218 (235)
T ss_pred HHHcCC
Confidence 555443
No 30
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.85 E-value=0.00045 Score=58.42 Aligned_cols=127 Identities=16% Similarity=0.043 Sum_probs=100.8
Q ss_pred hhhHHhhhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 023037 133 RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (288)
Q Consensus 133 r~~f~~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE~~~y~~~~n~~kak~~y~~A~~~a 212 (288)
..-.....++|.++...|+|++|...+++.....+.+ .....++..-+.+|...+++..|...|.+|+.+.
T Consensus 32 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~---------~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~ 102 (168)
T CHL00033 32 EKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDP---------YDRSYILYNIGLIHTSNGEHTKALEYYFQALERN 102 (168)
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccc---------hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 3345677899999999999999999999998873211 2234678888999999999999999999999886
Q ss_pred ccCCC-hhHHHHHHhhcchhhhhhccHHHHHHHHHHHHhhhhhh--CCh-hHHHHhHHHH
Q 023037 213 SAIPH-PRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEA--GNQ-RRIQCLKYLV 268 (288)
Q Consensus 213 ~~I~~-p~i~a~I~~~~G~l~~~ekdy~~A~syF~EaF~~y~e~--g~~-~a~~~LKY~~ 268 (288)
..... ...+|.+...-|..+...|+|..|..+|-+|+..|..+ .+| +...+..+|.
T Consensus 103 ~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~~~~~~~~ 162 (168)
T CHL00033 103 PFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYIEAQNWLK 162 (168)
T ss_pred cCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 54444 56778888888888889999999999999999999875 455 4445555443
No 31
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=97.81 E-value=0.0016 Score=68.37 Aligned_cols=199 Identities=16% Similarity=0.159 Sum_probs=124.9
Q ss_pred HHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-hhhhhHHHHHH--H---------
Q 023037 32 PEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSA-VTRNYSEKCIN--N--------- 99 (288)
Q Consensus 32 ~~~Al~~f~~ii~~~~e~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~-v~ka~~~k~i~--~--------- 99 (288)
.+.|.+.|..|++..++.. -+|.-=+.+.+..|+|-.++.+|+..+... +. .+-..+....+ +
T Consensus 146 ~~~A~a~F~~Vl~~sp~Ni----l~LlGkA~i~ynkkdY~~al~yyk~al~in-p~~~aD~rIgig~Cf~kl~~~~~a~~ 220 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNI----LALLGKARIAYNKKDYRGALKYYKKALRIN-PACKADVRIGIGHCFWKLGMSEKALL 220 (1018)
T ss_pred HHHHHHHHHHHHhhCCcch----HHHHHHHHHHhccccHHHHHHHHHHHHhcC-cccCCCccchhhhHHHhccchhhHHH
Confidence 5788888888888765432 123334457777788888888888866655 32 11111111111 0
Q ss_pred HHHHhccCCCcchhhHHHH---------------HHHHHHHHHHhhhhhhhH-HhhhhHHHHHhhhcchhHHHHHHHHHH
Q 023037 100 IMDFVSGSASQNFSLLREF---------------YQTTLKALEEAKNERLWF-KTNLKLCKIWFDMGEYGRMSKILKELH 163 (288)
Q Consensus 100 ild~~~~~~~~~~~~~~~~---------------~~~~l~~i~~a~ner~~f-~~~~kL~~lyl~~~~y~~~~~ll~elk 163 (288)
-..+.... ++..+... +......+..+=.+..-- -+.+.|++-|+..|+|..+..+....-
T Consensus 221 a~~ralqL---dp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai 297 (1018)
T KOG2002|consen 221 AFERALQL---DPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAI 297 (1018)
T ss_pred HHHHHHhc---ChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHH
Confidence 00111111 01111111 112222222111111111 456789999999999999988887776
Q ss_pred HhccCCCCCccccccchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhHHHHHHhhcchhhhhhccHHHHHH
Q 023037 164 KSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAAT 243 (288)
Q Consensus 164 k~~~~~~~~dDk~~~~~llEv~~lE~~~y~~~~n~~kak~~y~~A~~~a~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~s 243 (288)
+.- ..+ +...|.+..-++.||++||+.+|..+|..|+..++.-+.--.+| -|.||+.++|++.|.-
T Consensus 298 ~~t------~~~---~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~G-----lgQm~i~~~dle~s~~ 363 (1018)
T KOG2002|consen 298 KNT------ENK---SIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVG-----LGQMYIKRGDLEESKF 363 (1018)
T ss_pred Hhh------hhh---HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccc-----hhHHHHHhchHHHHHH
Confidence 661 233 78889999999999999999999999999999999765522233 3778999999999988
Q ss_pred HHHHHHhhh
Q 023037 244 DFFEAFKNY 252 (288)
Q Consensus 244 yF~EaF~~y 252 (288)
.|.-=.+.+
T Consensus 364 ~fEkv~k~~ 372 (1018)
T KOG2002|consen 364 CFEKVLKQL 372 (1018)
T ss_pred HHHHHHHhC
Confidence 877666554
No 32
>PRK11189 lipoprotein NlpI; Provisional
Probab=97.81 E-value=0.0046 Score=57.45 Aligned_cols=195 Identities=16% Similarity=0.125 Sum_probs=120.1
Q ss_pred CCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhccCCC
Q 023037 30 TDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSAS 109 (288)
Q Consensus 30 ~d~~~Al~~f~~ii~~~~e~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~~~~~~~ 109 (288)
...+.++.-+.+++...+-..+.....+.++|.+|...|+++++...|++.+..- +..+.+....+. .+.. .
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~-----~~~~-~- 111 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGI-----YLTQ-A- 111 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHH-----HHHH-C-
Confidence 4558899999999975442223346778899999999999999999999998877 665443332222 1111 1
Q ss_pred cchhhHHHHHHHHHHHHHHhhhhhhhHHhhhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHHH
Q 023037 110 QNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEI 189 (288)
Q Consensus 110 ~~~~~~~~~~~~~l~~i~~a~ner~~f~~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE~ 189 (288)
++.+.....++.+++. . -.......++|.++...|+|++|.+.++...+..+ +|..+ .+=.
T Consensus 112 g~~~~A~~~~~~Al~l---~---P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P-----~~~~~--------~~~~ 172 (296)
T PRK11189 112 GNFDAAYEAFDSVLEL---D---PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDP-----NDPYR--------ALWL 172 (296)
T ss_pred CCHHHHHHHHHHHHHh---C---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-----CCHHH--------HHHH
Confidence 1233444444444432 1 12234668899999999999999999999888732 23210 0111
Q ss_pred HHHHhhcCHHHHHHHHHHHHhhhcc---------------------------CCC-hhH---HHHHHhhcchhhhhhccH
Q 023037 190 QMYTETKNNKKLKQLYQKALAIKSA---------------------------IPH-PRI---MGIIRECGGKMHMAERQW 238 (288)
Q Consensus 190 ~~y~~~~n~~kak~~y~~A~~~a~~---------------------------I~~-p~i---~a~I~~~~G~l~~~ekdy 238 (288)
.++...++..+|...+.++....+. +.. |.+ .+....--|+++...||+
T Consensus 173 ~l~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~ 252 (296)
T PRK11189 173 YLAESKLDPKQAKENLKQRYEKLDKEQWGWNIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDL 252 (296)
T ss_pred HHHHccCCHHHHHHHHHHHHhhCCccccHHHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCH
Confidence 1223345666666666544322110 011 110 122334458899999999
Q ss_pred HHHHHHHHHHHhh
Q 023037 239 ADAATDFFEAFKN 251 (288)
Q Consensus 239 ~~A~syF~EaF~~ 251 (288)
+.|..+|-.|.++
T Consensus 253 ~~A~~~~~~Al~~ 265 (296)
T PRK11189 253 DEAAALFKLALAN 265 (296)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999888753
No 33
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.77 E-value=0.0039 Score=65.74 Aligned_cols=229 Identities=10% Similarity=0.041 Sum_probs=144.7
Q ss_pred CCCCHHHHHHHHHHhhcCCcc--chhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhh-hHHHHHHHHHHHh
Q 023037 28 VETDPEGALAGFAEVVAMEPE--KAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRN-YSEKCINNIMDFV 104 (288)
Q Consensus 28 ~~~d~~~Al~~f~~ii~~~~e--~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka-~~~k~i~~ild~~ 104 (288)
..++++.|+..+.+.+....+ ...+...++..++.++..+|+++++.+++.+.+.......... -..-.+...+-.+
T Consensus 503 ~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 582 (903)
T PRK04841 503 CKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQL 582 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHH
Confidence 356777777777777754321 2233345677788888888888888888888888763321100 0000111111101
Q ss_pred ccCCCcchhhHHHHHHHHHHHHHHhhhhhhhHHhhhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCC------------
Q 023037 105 SGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGT------------ 172 (288)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~l~~i~~a~ner~~f~~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~------------ 172 (288)
-... .+.+.....+..++...+... ..........++.++...|++.++...+.+...........
T Consensus 583 ~~~~-G~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~ 660 (903)
T PRK04841 583 LWEW-ARLDEAEQCARKGLEVLSNYQ-PQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRL 660 (903)
T ss_pred HHHh-cCHHHHHHHHHHhHHhhhccC-chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHH
Confidence 0001 123333344444444333221 11223556678999999999999888777776542221100
Q ss_pred ---------------------ccccccchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhHHHHHHhhcchh
Q 023037 173 ---------------------DDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKM 231 (288)
Q Consensus 173 ---------------------dDk~~~~~llEv~~lE~~~y~~~~n~~kak~~y~~A~~~a~~I~~p~i~a~I~~~~G~l 231 (288)
..........+.+.....++...+++.+|...+.+++........+...+.+...-|..
T Consensus 661 ~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a 740 (903)
T PRK04841 661 IYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQL 740 (903)
T ss_pred HHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence 00000011223355678888999999999999999999988888888888899999999
Q ss_pred hhhhccHHHHHHHHHHHHhhhhhhCCh
Q 023037 232 HMAERQWADAATDFFEAFKNYDEAGNQ 258 (288)
Q Consensus 232 ~~~ekdy~~A~syF~EaF~~y~e~g~~ 258 (288)
+...|++..|...|-+|++.+...|-.
T Consensus 741 ~~~~G~~~~A~~~L~~Al~la~~~g~~ 767 (903)
T PRK04841 741 YWQQGRKSEAQRVLLEALKLANRTGFI 767 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHhCccchh
Confidence 999999999999999999999887763
No 34
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.77 E-value=0.00048 Score=53.44 Aligned_cols=116 Identities=9% Similarity=0.028 Sum_probs=91.0
Q ss_pred HhhhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCC
Q 023037 137 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP 216 (288)
Q Consensus 137 ~~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE~~~y~~~~n~~kak~~y~~A~~~a~~I~ 216 (288)
++...+|..++..|+|+++...+.++.+..+ +. ....+++..-+.++...+++..|...|..+......-
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~------~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~- 72 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYP------KS---TYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKS- 72 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC------Cc---cccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCC-
Confidence 3567899999999999999999999987621 11 3446788889999999999999999999998754221
Q ss_pred ChhHHHHHHhhcchhhhhhccHHHHHHHHHHHHhhhhhhCChhHHHHhHH
Q 023037 217 HPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKY 266 (288)
Q Consensus 217 ~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EaF~~y~e~g~~~a~~~LKY 266 (288)
| ....+....|.++...++++.|..+|-++.+.+- +++...++++.
T Consensus 73 -~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p--~~~~~~~~~~~ 118 (119)
T TIGR02795 73 -P-KAPDALLKLGMSLQELGDKEKAKATLQQVIKRYP--GSSAAKLAQKR 118 (119)
T ss_pred -C-cccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCc--CChhHHHHHhc
Confidence 1 2234456778888999999999999999999874 56777777664
No 35
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.77 E-value=0.0034 Score=55.10 Aligned_cols=172 Identities=13% Similarity=0.168 Sum_probs=110.3
Q ss_pred HHHHhhccc-CCCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHH
Q 023037 19 LCSILEKGL-VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCI 97 (288)
Q Consensus 19 ~~y~~ak~~-~~~d~~~Al~~f~~ii~~~~e~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i 97 (288)
.+|..|... ..+|+++|++.|++++..-+ .+.+...|...++..+++.|+++++...+++++... |.-+...-+--+
T Consensus 7 ~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P-~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y-P~~~~~~~A~Y~ 84 (203)
T PF13525_consen 7 ALYQKALEALQQGDYEEAIKLFEKLIDRYP-NSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY-PNSPKADYALYM 84 (203)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH-T-TSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH--TT-TTHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCcchhhHHHH
Confidence 456667664 68899999999999998754 456788999999999999999999999999999887 764433222222
Q ss_pred HHHHHHhccC-----CCcchhhHHHHHHHHHHHHHHhhhh-------------hh-hHHhhhhHHHHHhhhcchhHHHHH
Q 023037 98 NNIMDFVSGS-----ASQNFSLLREFYQTTLKALEEAKNE-------------RL-WFKTNLKLCKIWFDMGEYGRMSKI 158 (288)
Q Consensus 98 ~~ild~~~~~-----~~~~~~~~~~~~~~~l~~i~~a~ne-------------r~-~f~~~~kL~~lyl~~~~y~~~~~l 158 (288)
..+. .+... .+.+.....+.+..+.+.++.-.+. |. ...-++.+|..|+..|.|..|..-
T Consensus 85 ~g~~-~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r 163 (203)
T PF13525_consen 85 LGLS-YYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIR 163 (203)
T ss_dssp HHHH-HHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHH
T ss_pred HHHH-HHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 2111 11100 1233445556666666666532211 11 115578899999999999998877
Q ss_pred HHHHHHhccCCCCCccccccchHHHHHHHHHHHHHhhcCHHHHH
Q 023037 159 LKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLK 202 (288)
Q Consensus 159 l~elkk~~~~~~~~dDk~~~~~llEv~~lE~~~y~~~~n~~kak 202 (288)
.+.+.+.-+.. ...-|...+-.+.|..++....++
T Consensus 164 ~~~v~~~yp~t---------~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 164 FQYVIENYPDT---------PAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHSTTS---------HHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHCCCC---------chHHHHHHHHHHHHHHhCChHHHH
Confidence 77777664332 444577778888888888766443
No 36
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.75 E-value=0.00034 Score=67.66 Aligned_cols=244 Identities=13% Similarity=0.063 Sum_probs=161.9
Q ss_pred CCCHHHHHHHHHHhhcCCc---cchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH---HHH
Q 023037 29 ETDPEGALAGFAEVVAMEP---EKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINN---IMD 102 (288)
Q Consensus 29 ~~d~~~Al~~f~~ii~~~~---e~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~---ild 102 (288)
-.|+++|+++..-=+.... ++.+. .||--+||.++.-.|.+++++.+..+-+.|.+..-.|=--++.+=| |..
T Consensus 68 L~DY~kAl~yH~hDltlar~lgdklGE-AKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYh 146 (639)
T KOG1130|consen 68 LKDYEKALKYHTHDLTLARLLGDKLGE-AKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYH 146 (639)
T ss_pred HhhHHHHHhhhhhhHHHHHHhcchhcc-ccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhh
Confidence 3466666666554433321 33331 5777788888888888888888887777777554333333333333 221
Q ss_pred HhccCCC---------------cchhhHHHHHHHHHHHHHHhhhhhhhH-HhhhhHHHHHhhhcchhHHHHHHHHHHHhc
Q 023037 103 FVSGSAS---------------QNFSLLREFYQTTLKALEEAKNERLWF-KTNLKLCKIWFDMGEYGRMSKILKELHKSC 166 (288)
Q Consensus 103 ~~~~~~~---------------~~~~~~~~~~~~~l~~i~~a~ner~~f-~~~~kL~~lyl~~~~y~~~~~ll~elkk~~ 166 (288)
.=+.+.+ ......-+||..-++..+..+ +|..- +..=+|++.|+-.|+|+.+...=++=..+.
T Consensus 147 akGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lg-Dr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia 225 (639)
T KOG1130|consen 147 AKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLG-DRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIA 225 (639)
T ss_pred hcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhh-hHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHH
Confidence 1111111 112222344555555444432 33333 888899999999999999755544444443
Q ss_pred cCCCCCccccccchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhHHHHHHhhcchhhhhhccHHHHHHHHH
Q 023037 167 QREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFF 246 (288)
Q Consensus 167 ~~~~~~dDk~~~~~llEv~~lE~~~y~~~~n~~kak~~y~~A~~~a~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~ 246 (288)
++- .|+ .-.=-.|+.-+..|.-++|++-|.+.|..++.++-.+....+-|+.=-..|.-|.--++|.+|..||-
T Consensus 226 ~ef---GDr---AaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~ 299 (639)
T KOG1130|consen 226 QEF---GDR---AAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQ 299 (639)
T ss_pred HHh---hhH---HHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 333 565 44445566667777777889999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhhCCh----hH--------------HHHhHHHHHHHHhcCCCCCC
Q 023037 247 EAFKNYDEAGNQ----RR--------------IQCLKYLVLANMLMESEVNP 280 (288)
Q Consensus 247 EaF~~y~e~g~~----~a--------------~~~LKY~~L~~il~~~~~dp 280 (288)
.-+...++.+|. |+ .++|+|..+..=++..--||
T Consensus 300 rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~ 351 (639)
T KOG1130|consen 300 RHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDT 351 (639)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCc
Confidence 988888875542 33 35788888877665444444
No 37
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=97.74 E-value=0.0034 Score=64.79 Aligned_cols=95 Identities=16% Similarity=0.221 Sum_probs=64.3
Q ss_pred hhhhHHHHHhhhcchhH----HHHHHHHHHHhccCCCCCccccccchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhc
Q 023037 138 TNLKLCKIWFDMGEYGR----MSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKS 213 (288)
Q Consensus 138 ~~~kL~~lyl~~~~y~~----~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE~~~y~~~~n~~kak~~y~~A~~~a~ 213 (288)
+...+|.+|...|++.+ |...++++.+..+ ++ .+++..-+.++..++++.+|...|.+++....
T Consensus 248 ~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P-----~~-------~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P 315 (656)
T PRK15174 248 LRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNS-----DN-------VRIVTLYADALIRTGQNEKAIPLLQQSLATHP 315 (656)
T ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCC-----CC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 44567777777777775 5666666666521 12 25666778888888888888888888887532
Q ss_pred cCCChhHHHHHHhhcchhhhhhccHHHHHHHHHHHHh
Q 023037 214 AIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFK 250 (288)
Q Consensus 214 ~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EaF~ 250 (288)
. +|. +...-|.++...|+|+.|...|-.+.+
T Consensus 316 ~--~~~----a~~~La~~l~~~G~~~eA~~~l~~al~ 346 (656)
T PRK15174 316 D--LPY----VRAMYARALRQVGQYTAASDEFVQLAR 346 (656)
T ss_pred C--CHH----HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2 132 333457778888888888888766654
No 38
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.74 E-value=0.0093 Score=52.35 Aligned_cols=169 Identities=13% Similarity=0.133 Sum_probs=112.6
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHHHHhh
Q 023037 51 EWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAK 130 (288)
Q Consensus 51 ~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~~~~~~~~~~~~~~~~~~~~l~~i~~a~ 130 (288)
+|...++++.|..+...|+|+++.+.++.+..-. |. +
T Consensus 2 ~~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~-P~-------------------s----------------------- 38 (203)
T PF13525_consen 2 EDTAEALYQKALEALQQGDYEEAIKLFEKLIDRY-PN-------------------S----------------------- 38 (203)
T ss_dssp ---HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH--TT-------------------S-----------------------
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CC-------------------C-----------------------
Confidence 5678899999999999999999999999987766 32 0
Q ss_pred hhhhhHHhhhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHHHHHHHh--------hcCHHHHH
Q 023037 131 NERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTE--------TKNNKKLK 202 (288)
Q Consensus 131 ner~~f~~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE~~~y~~--------~~n~~kak 202 (288)
...-...+.+|..++..|+|.+|...+++..+.-+.. ...-+++..-+..+.. .++...++
T Consensus 39 --~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~---------~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~ 107 (203)
T PF13525_consen 39 --PYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNS---------PKADYALYMLGLSYYKQIPGILRSDRDQTSTR 107 (203)
T ss_dssp --TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT----------TTHHHHHHHHHHHHHHHHHHHH-TT---HHHH
T ss_pred --hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC---------cchhhHHHHHHHHHHHhCccchhcccChHHHH
Confidence 1111345678899999999999999999988775543 2233444444444433 23444444
Q ss_pred HHHHHHHhhhccCCC-hh-------------HHHHHHhhcchhhhhhccHHHHHHHHHHHHhhhhhhCChhHHHHhHHHH
Q 023037 203 QLYQKALAIKSAIPH-PR-------------IMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLV 268 (288)
Q Consensus 203 ~~y~~A~~~a~~I~~-p~-------------i~a~I~~~~G~l~~~ekdy~~A~syF~EaF~~y~e~g~~~a~~~LKY~~ 268 (288)
.++....++-+.-|. |. .+|.-.+.-|+.|+..|.|..|...|-..+++|- |++.+-.+|.+|+
T Consensus 108 ~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp--~t~~~~~al~~l~ 185 (203)
T PF13525_consen 108 KAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYP--DTPAAEEALARLA 185 (203)
T ss_dssp HHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHST--TSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC--CCchHHHHHHHHH
Confidence 555544444444444 22 2344445679999999999999999999999996 6777778999999
Q ss_pred HHHHhcC
Q 023037 269 LANMLME 275 (288)
Q Consensus 269 L~~il~~ 275 (288)
-+...++
T Consensus 186 ~~y~~l~ 192 (203)
T PF13525_consen 186 EAYYKLG 192 (203)
T ss_dssp HHHHHTT
T ss_pred HHHHHhC
Confidence 8887665
No 39
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.73 E-value=0.00042 Score=49.22 Aligned_cols=97 Identities=13% Similarity=0.171 Sum_probs=78.1
Q ss_pred hhhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCC
Q 023037 138 TNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH 217 (288)
Q Consensus 138 ~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE~~~y~~~~n~~kak~~y~~A~~~a~~I~~ 217 (288)
+..++|..++..|++.++...++++.+..+ . .. .++..-+.+|...+++.+|...+..+.......
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-------~---~~--~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-- 67 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDP-------D---NA--DAYYNLAAAYYKLGKYEEALEDYEKALELDPDN-- 67 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCC-------c---cH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc--
Confidence 456789999999999999999999988722 2 11 678888999999999999999999988764332
Q ss_pred hhHHHHHHhhcchhhhhhccHHHHHHHHHHHHhhh
Q 023037 218 PRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (288)
Q Consensus 218 p~i~a~I~~~~G~l~~~ekdy~~A~syF~EaF~~y 252 (288)
| .....-|.++...++++.|..+|-++++..
T Consensus 68 ~----~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 68 A----KAYYNLGLAYYKLGKYEEALEAYEKALELD 98 (100)
T ss_pred h----hHHHHHHHHHHHHHhHHHHHHHHHHHHccC
Confidence 2 455666788999999999999998887643
No 40
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=97.73 E-value=0.0039 Score=65.41 Aligned_cols=204 Identities=8% Similarity=0.078 Sum_probs=134.6
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhh---hhhHHHHHHHHHHHhc
Q 023037 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVT---RNYSEKCINNIMDFVS 105 (288)
Q Consensus 29 ~~d~~~Al~~f~~ii~~~~e~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~---ka~~~k~i~~ild~~~ 105 (288)
.+++++|++.|++++...++...+ +...++.+|..+|++++|+.+|++++..- +.-. ......+... +.
T Consensus 250 ~g~~~eA~~~~~~ll~~~~~~P~~---a~~~la~~yl~~g~~e~A~~~l~~~l~~~-p~~~~~~~~~~~~L~~a----~~ 321 (765)
T PRK10049 250 RDRYKDVISEYQRLKAEGQIIPPW---AQRWVASAYLKLHQPEKAQSILTELFYHP-ETIADLSDEELADLFYS----LL 321 (765)
T ss_pred hhhHHHHHHHHHHhhccCCCCCHH---HHHHHHHHHHhcCCcHHHHHHHHHHhhcC-CCCCCCChHHHHHHHHH----HH
Confidence 457899999999988875322222 22236889999999999999999977532 2110 1111111111 11
Q ss_pred cCCCcchhhHHHHHHHHHHHHHHhhh------------hhhhHHhhhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCc
Q 023037 106 GSASQNFSLLREFYQTTLKALEEAKN------------ERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTD 173 (288)
Q Consensus 106 ~~~~~~~~~~~~~~~~~l~~i~~a~n------------er~~f~~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~d 173 (288)
. .+ ..++....+....+.... +-.+......++.++...|++++|..+++++....+ +
T Consensus 322 ~-~g----~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P-----~ 391 (765)
T PRK10049 322 E-SE----NYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAP-----G 391 (765)
T ss_pred h-cc----cHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----C
Confidence 1 11 222233333333222111 113456678899999999999999999999987722 2
Q ss_pred cccccchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCC-hhHHHHHHhhcchhhhhhccHHHHHHHHHHHHhhh
Q 023037 174 DQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH-PRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (288)
Q Consensus 174 Dk~~~~~llEv~~lE~~~y~~~~n~~kak~~y~~A~~~a~~I~~-p~i~a~I~~~~G~l~~~ekdy~~A~syF~EaF~~y 252 (288)
+ .+++...+.++...+++.+|.+.|.+|+... |. |. +...-|..++..++|.+|...+-+..+.+
T Consensus 392 n-------~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~---Pd~~~----l~~~~a~~al~~~~~~~A~~~~~~ll~~~ 457 (765)
T PRK10049 392 N-------QGLRIDYASVLQARGWPRAAENELKKAEVLE---PRNIN----LEVEQAWTALDLQEWRQMDVLTDDVVARE 457 (765)
T ss_pred C-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC---CCChH----HHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 2 3788899999999999999999999998876 33 32 44455667888999999999999988877
Q ss_pred hhhCChhHHHHh
Q 023037 253 DEAGNQRRIQCL 264 (288)
Q Consensus 253 ~e~g~~~a~~~L 264 (288)
-+.....++.-.
T Consensus 458 Pd~~~~~~~~~~ 469 (765)
T PRK10049 458 PQDPGVQRLARA 469 (765)
T ss_pred CCCHHHHHHHHH
Confidence 554444444433
No 41
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=97.69 E-value=0.0042 Score=60.12 Aligned_cols=94 Identities=15% Similarity=0.320 Sum_probs=60.9
Q ss_pred HHhhhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccC
Q 023037 136 FKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAI 215 (288)
Q Consensus 136 f~~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE~~~y~~~~n~~kak~~y~~A~~~a~~I 215 (288)
-.+...++..+...|+.++|..++.+..+. + .|. ++..+..++ ..++..++...+.+.. ..-
T Consensus 263 ~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~---~~~-------~l~~l~~~l--~~~~~~~al~~~e~~l---k~~ 324 (398)
T PRK10747 263 VALQVAMAEHLIECDDHDTAQQIILDGLKR---Q---YDE-------RLVLLIPRL--KTNNPEQLEKVLRQQI---KQH 324 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---C---CCH-------HHHHHHhhc--cCCChHHHHHHHHHHH---hhC
Confidence 356778999999999999999999888774 2 121 111222222 2366666655555443 333
Q ss_pred CC-hhHHHHHHhhcchhhhhhccHHHHHHHHHHHHhh
Q 023037 216 PH-PRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (288)
Q Consensus 216 ~~-p~i~a~I~~~~G~l~~~ekdy~~A~syF~EaF~~ 251 (288)
|+ | .+..+-|.+++..++|.+|..+|-.+.+.
T Consensus 325 P~~~----~l~l~lgrl~~~~~~~~~A~~~le~al~~ 357 (398)
T PRK10747 325 GDTP----LLWSTLGQLLMKHGEWQEASLAFRAALKQ 357 (398)
T ss_pred CCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 33 4 35667788888888888888888877654
No 42
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.68 E-value=0.012 Score=62.19 Aligned_cols=221 Identities=10% Similarity=-0.047 Sum_probs=144.9
Q ss_pred CCCCHHHHHHHHHHhhcCCc-----cchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Q 023037 28 VETDPEGALAGFAEVVAMEP-----EKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMD 102 (288)
Q Consensus 28 ~~~d~~~Al~~f~~ii~~~~-----e~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild 102 (288)
..+++++|...+......-. +.......+...++.++...|+++++..++++.+... +.-......-..+. +-
T Consensus 421 ~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~-lg 498 (903)
T PRK04841 421 SQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAEL-PLTWYYSRIVATSV-LG 498 (903)
T ss_pred HCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC-CCccHHHHHHHHHH-HH
Confidence 35677888888877654311 1223334455567889999999999999999988754 32111000111111 11
Q ss_pred HhccCCCcchhhHHHHHHHHHHHHHHhhhhhhhHHhhhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHH
Q 023037 103 FVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLL 182 (288)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~l~~i~~a~ner~~f~~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~ll 182 (288)
.+.... .+.+.....++.++...+..++..........++.+++..|+++++...+++....+....+ .+. ....
T Consensus 499 ~~~~~~-G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~-~~~---~~~~ 573 (903)
T PRK04841 499 EVHHCK-GELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHL-EQL---PMHE 573 (903)
T ss_pred HHHHHc-CCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcc-ccc---cHHH
Confidence 111112 23445555566665555544444334456789999999999999999999999888665421 111 2223
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhHHHHHHhhcchhhhhhccHHHHHHHHHHHHhhhhhhC
Q 023037 183 EVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAG 256 (288)
Q Consensus 183 Ev~~lE~~~y~~~~n~~kak~~y~~A~~~a~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EaF~~y~e~g 256 (288)
.++...+.++...|++..|.+.+..++.+..... |...+......|.++...+|+..|...+-++...+...+
T Consensus 574 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~ 646 (903)
T PRK04841 574 FLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQ-PQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGR 646 (903)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccC-chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccc
Confidence 4466778899999999999999999999877655 333444555678899999999999999988876555443
No 43
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=97.67 E-value=0.0034 Score=67.62 Aligned_cols=100 Identities=7% Similarity=-0.043 Sum_probs=79.2
Q ss_pred HHhhhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccC
Q 023037 136 FKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAI 215 (288)
Q Consensus 136 f~~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE~~~y~~~~n~~kak~~y~~A~~~a~~I 215 (288)
.....++|.++.+.|++++|...+++....-+ ++. +++..-+.++...+++.+|...|.+|+.....
T Consensus 609 ~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~P-----d~~-------~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~- 675 (987)
T PRK09782 609 ANAYVARATIYRQRHNVPAAVSDLRAALELEP-----NNS-------NYQAALGYALWDSGDIAQSREMLERAHKGLPD- 675 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-----CCH-------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-
Confidence 35668899999999999999999999888822 222 67777788888899999999999999886431
Q ss_pred CChhHHHHHHhhcchhhhhhccHHHHHHHHHHHHhhhh
Q 023037 216 PHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYD 253 (288)
Q Consensus 216 ~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EaF~~y~ 253 (288)
+| .+...-|.++...|+++.|..+|-.+++.-.
T Consensus 676 -~~----~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P 708 (987)
T PRK09782 676 -DP----ALIRQLAYVNQRLDDMAATQHYARLVIDDID 708 (987)
T ss_pred -CH----HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 12 4556678888999999999999999987554
No 44
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=97.65 E-value=0.0092 Score=61.61 Aligned_cols=99 Identities=8% Similarity=0.012 Sum_probs=76.5
Q ss_pred HHhhhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccC
Q 023037 136 FKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAI 215 (288)
Q Consensus 136 f~~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE~~~y~~~~n~~kak~~y~~A~~~a~~I 215 (288)
..+...+|.++...|++++|...++++...-+ ++. +++..-+.+|..+|++..|.+.|.++....
T Consensus 284 ~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P-----~~~-------~a~~~La~~l~~~G~~~eA~~~l~~al~~~--- 348 (656)
T PRK15174 284 VRIVTLYADALIRTGQNEKAIPLLQQSLATHP-----DLP-------YVRAMYARALRQVGQYTAASDEFVQLAREK--- 348 (656)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-----CCH-------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---
Confidence 36778899999999999999999999988721 222 456666889999999999999999887753
Q ss_pred CChhHHHHHHhhcchhhhhhccHHHHHHHHHHHHhhh
Q 023037 216 PHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (288)
Q Consensus 216 ~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EaF~~y 252 (288)
|.-. ......|.++...|+++.|...|-++.+..
T Consensus 349 --P~~~-~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 349 --GVTS-KWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred --ccch-HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 2211 123334778889999999999998887663
No 45
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.61 E-value=0.00047 Score=50.56 Aligned_cols=74 Identities=15% Similarity=0.178 Sum_probs=65.5
Q ss_pred hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCC-hhHHHHHHhhcchhhhhhccHHHHHHHHHHHHhhhh
Q 023037 180 QLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH-PRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYD 253 (288)
Q Consensus 180 ~llEv~~lE~~~y~~~~n~~kak~~y~~A~~~a~~I~~-p~i~a~I~~~~G~l~~~ekdy~~A~syF~EaF~~y~ 253 (288)
.++.++..-+.+|..++++.+|...|.+|+++....++ +...+...-.-|.+|...||++.|..+|-+|++-+.
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~ 77 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFE 77 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence 45788899999999999999999999999999777777 455699999999999999999999999999998764
No 46
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=0.0044 Score=61.89 Aligned_cols=173 Identities=18% Similarity=0.249 Sum_probs=128.4
Q ss_pred HHHHHHhhcccCCCCHHHHHHHHHHhhcCCcc-chhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-hhh-----
Q 023037 17 RVLCSILEKGLVETDPEGALAGFAEVVAMEPE-KAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKS-AVT----- 89 (288)
Q Consensus 17 ~~~~y~~ak~~~~~d~~~Al~~f~~ii~~~~e-~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~-~v~----- 89 (288)
.|-|||-- -+..++|-+.|-+....++. ...| ...|..+.-+|..|+++..|...-.++.. ..|
T Consensus 317 aVg~YYl~----i~k~seARry~SKat~lD~~fgpaW-----l~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlg 387 (611)
T KOG1173|consen 317 AVGCYYLM----IGKYSEARRYFSKATTLDPTFGPAW-----LAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLG 387 (611)
T ss_pred hHHHHHHH----hcCcHHHHHHHHHHhhcCccccHHH-----HHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHH
Confidence 57788865 36778999999999888764 4566 45677888888888888877665555411 011
Q ss_pred --------hhhHHHHHHHHHHHhccCCC---------------cchhhHHHHHHHHHHHHHHhhhhhh-hHHhhhhHHHH
Q 023037 90 --------RNYSEKCINNIMDFVSGSAS---------------QNFSLLREFYQTTLKALEEAKNERL-WFKTNLKLCKI 145 (288)
Q Consensus 90 --------ka~~~k~i~~ild~~~~~~~---------------~~~~~~~~~~~~~l~~i~~a~ner~-~f~~~~kL~~l 145 (288)
-.-+++-+.. .++..|+ ..+.....++..+++.++...+++. |-.+.++||.+
T Consensus 388 mey~~t~n~kLAe~Ff~~---A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~ 464 (611)
T KOG1173|consen 388 MEYMRTNNLKLAEKFFKQ---ALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHA 464 (611)
T ss_pred HHHHHhccHHHHHHHHHH---HHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHH
Confidence 1122222222 1221232 3455667777888888888888865 88999999999
Q ss_pred HhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhc
Q 023037 146 WFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKS 213 (288)
Q Consensus 146 yl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE~~~y~~~~n~~kak~~y~~A~~~a~ 213 (288)
|...+.|.+|....+.....+++ | .++|+.-+=+|+.+||+.+|-..|.+|+.++.
T Consensus 465 ~Rkl~~~~eAI~~~q~aL~l~~k-----~-------~~~~asig~iy~llgnld~Aid~fhKaL~l~p 520 (611)
T KOG1173|consen 465 YRKLNKYEEAIDYYQKALLLSPK-----D-------ASTHASIGYIYHLLGNLDKAIDHFHKALALKP 520 (611)
T ss_pred HHHHhhHHHHHHHHHHHHHcCCC-----c-------hhHHHHHHHHHHHhcChHHHHHHHHHHHhcCC
Confidence 99999999999999999999654 2 38899999999999999999999999998765
No 47
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=97.60 E-value=0.0014 Score=59.75 Aligned_cols=104 Identities=12% Similarity=0.170 Sum_probs=74.2
Q ss_pred HhhhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCC
Q 023037 137 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP 216 (288)
Q Consensus 137 ~~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE~~~y~~~~n~~kak~~y~~A~~~a~~I~ 216 (288)
..-..+|.++...|+..+|..++++..+.-+ +|. ++...-+-++...|+..++++++....... +
T Consensus 147 ~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P-----~~~-------~~~~~l~~~li~~~~~~~~~~~l~~~~~~~---~ 211 (280)
T PF13429_consen 147 RFWLALAEIYEQLGDPDKALRDYRKALELDP-----DDP-------DARNALAWLLIDMGDYDEAREALKRLLKAA---P 211 (280)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHH-T-----T-H-------HHHHHHHHHHCTTCHHHHHHHHHHHHHHH----H
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----CCH-------HHHHHHHHHHHHCCChHHHHHHHHHHHHHC---c
Confidence 5567788999999999999999999988833 333 334444556778889999999888877765 3
Q ss_pred C-hhHHHHHHhhcchhhhhhccHHHHHHHHHHHHhhhhhhCChhHH
Q 023037 217 H-PRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRI 261 (288)
Q Consensus 217 ~-p~i~a~I~~~~G~l~~~ekdy~~A~syF~EaF~~y~e~g~~~a~ 261 (288)
. |.+... -|..++..|+++.|..+|-++.+. ..+||...
T Consensus 212 ~~~~~~~~----la~~~~~lg~~~~Al~~~~~~~~~--~p~d~~~~ 251 (280)
T PF13429_consen 212 DDPDLWDA----LAAAYLQLGRYEEALEYLEKALKL--NPDDPLWL 251 (280)
T ss_dssp TSCCHCHH----HHHHHHHHT-HHHHHHHHHHHHHH--STT-HHHH
T ss_pred CHHHHHHH----HHHHhccccccccccccccccccc--cccccccc
Confidence 3 554433 388889999999999999998873 34566553
No 48
>PLN03218 maturation of RBCL 1; Provisional
Probab=97.58 E-value=0.018 Score=62.69 Aligned_cols=29 Identities=10% Similarity=0.133 Sum_probs=17.6
Q ss_pred HhhhhHHHHHhhhcchhHHHHHHHHHHHh
Q 023037 137 KTNLKLCKIWFDMGEYGRMSKILKELHKS 165 (288)
Q Consensus 137 ~~~~kL~~lyl~~~~y~~~~~ll~elkk~ 165 (288)
.+..-++..|...|++++|..++.++.+.
T Consensus 615 ~tynsLI~ay~k~G~~deAl~lf~eM~~~ 643 (1060)
T PLN03218 615 EVYTIAVNSCSQKGDWDFALSIYDDMKKK 643 (1060)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Confidence 34455666666666666666666666554
No 49
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.54 E-value=0.008 Score=59.05 Aligned_cols=201 Identities=15% Similarity=0.185 Sum_probs=126.0
Q ss_pred cCCCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhcc
Q 023037 27 LVETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSG 106 (288)
Q Consensus 27 ~~~~d~~~Al~~f~~ii~~~~e~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~~~~ 106 (288)
+..+|.++|.+.|++.++.+.. +-.||.++|-.+..+|+.+++++++-.+-.++..+ +..---|-+|.+.+..
T Consensus 501 f~ngd~dka~~~ykeal~ndas----c~ealfniglt~e~~~~ldeald~f~klh~il~nn---~evl~qianiye~led 573 (840)
T KOG2003|consen 501 FANGDLDKAAEFYKEALNNDAS----CTEALFNIGLTAEALGNLDEALDCFLKLHAILLNN---AEVLVQIANIYELLED 573 (840)
T ss_pred eecCcHHHHHHHHHHHHcCchH----HHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHhhC
Confidence 3588999999999999986532 67899999999999999999999998887666222 1111122233333321
Q ss_pred CCCcchhhHHHHHHHHHHHHHHhhhhhhhHHhhhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHH
Q 023037 107 SASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYA 186 (288)
Q Consensus 107 ~~~~~~~~~~~~~~~~l~~i~~a~ner~~f~~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~ 186 (288)
+.+..+++-.+...+ .++- .+-.||+.||=+.|+-.++-.+.-+.-++.+- -+|+.-
T Consensus 574 -----~aqaie~~~q~~sli---p~dp---~ilskl~dlydqegdksqafq~~ydsyryfp~------------nie~ie 630 (840)
T KOG2003|consen 574 -----PAQAIELLMQANSLI---PNDP---AILSKLADLYDQEGDKSQAFQCHYDSYRYFPC------------NIETIE 630 (840)
T ss_pred -----HHHHHHHHHHhcccC---CCCH---HHHHHHHHHhhcccchhhhhhhhhhcccccCc------------chHHHH
Confidence 212222222111111 0111 46779999999999999988887777776432 123333
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhHHHHHHhhcchhhhhhccHHHHHHHHHHHHhhhhhhCChhHHHHhHH
Q 023037 187 IEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKY 266 (288)
Q Consensus 187 lE~~~y~~~~n~~kak~~y~~A~~~a~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EaF~~y~e~g~~~a~~~LKY 266 (288)
--.-.|..+.=..|+..++.+|--+.-.. .+-|-.| .--+-..|+|.+|+..+..--+-| |+-+.|||+
T Consensus 631 wl~ayyidtqf~ekai~y~ekaaliqp~~--~kwqlmi----asc~rrsgnyqka~d~yk~~hrkf-----pedldclkf 699 (840)
T KOG2003|consen 631 WLAAYYIDTQFSEKAINYFEKAALIQPNQ--SKWQLMI----ASCFRRSGNYQKAFDLYKDIHRKF-----PEDLDCLKF 699 (840)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHhcCccH--HHHHHHH----HHHHHhcccHHHHHHHHHHHHHhC-----ccchHHHHH
Confidence 33444445555678888888875544322 2222222 223457889988876654444433 889999999
Q ss_pred HH
Q 023037 267 LV 268 (288)
Q Consensus 267 ~~ 268 (288)
+|
T Consensus 700 lv 701 (840)
T KOG2003|consen 700 LV 701 (840)
T ss_pred HH
Confidence 87
No 50
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.50 E-value=0.00056 Score=50.14 Aligned_cols=72 Identities=17% Similarity=0.218 Sum_probs=62.1
Q ss_pred HHhhhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 023037 136 FKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (288)
Q Consensus 136 f~~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE~~~y~~~~n~~kak~~y~~A~~~a 212 (288)
..+..++|.+|...|+|++|.+.+++..+++...+ ++. ..++.++..-+.+|..+|++.+|...+.+|+++.
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~---~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLG--DDH---PDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT--THH---HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHC--CCC---HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 46788999999999999999999999999955543 343 6679999999999999999999999999998875
No 51
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=97.49 E-value=0.013 Score=54.67 Aligned_cols=193 Identities=9% Similarity=-0.032 Sum_probs=126.7
Q ss_pred CCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhccC-C
Q 023037 30 TDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGS-A 108 (288)
Q Consensus 30 ~d~~~Al~~f~~ii~~~~e~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~~~~~-~ 108 (288)
++|+.|.+.+..+....+....-.+. ....+.++...|+++++.+.+++.+... |.-.. .....+..+... .
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~e~-~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~-----a~~~~~~~~~~~~~ 92 (355)
T cd05804 20 GERPAAAAKAAAAAQALAARATERER-AHVEALSAWIAGDLPKALALLEQLLDDY-PRDLL-----ALKLHLGAFGLGDF 92 (355)
T ss_pred CCcchHHHHHHHHHHHhccCCCHHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHH-----HHHHhHHHHHhccc
Confidence 46777788888887765432221223 3345778899999999999999998876 54221 111001111110 0
Q ss_pred CcchhhHHHHHHHHHHHHH-HhhhhhhhHHhhhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHH
Q 023037 109 SQNFSLLREFYQTTLKALE-EAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAI 187 (288)
Q Consensus 109 ~~~~~~~~~~~~~~l~~i~-~a~ner~~f~~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~l 187 (288)
.. .. ....+.++ +....-........++.++...|+++++...+++..+.-+ ++ ..++..
T Consensus 93 ~~---~~----~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p-----~~-------~~~~~~ 153 (355)
T cd05804 93 SG---MR----DHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNP-----DD-------AWAVHA 153 (355)
T ss_pred cc---Cc----hhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-----CC-------cHHHHH
Confidence 00 11 11112222 2222333334556788999999999999999999988722 22 256677
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHhhhccCCChhHHHHHHhhcchhhhhhccHHHHHHHHHHHHh
Q 023037 188 EIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFK 250 (288)
Q Consensus 188 E~~~y~~~~n~~kak~~y~~A~~~a~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EaF~ 250 (288)
-+.+|...|++.++.+.+.+++..... +|.........-|.+|...|+++.|...|-++..
T Consensus 154 la~i~~~~g~~~eA~~~l~~~l~~~~~--~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 154 VAHVLEMQGRFKEGIAFMESWRDTWDC--SSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred HHHHHHHcCCHHHHHHHHHhhhhccCC--CcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 799999999999999999999876543 3555555566778889999999999999988753
No 52
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.44 E-value=0.025 Score=53.53 Aligned_cols=199 Identities=15% Similarity=0.233 Sum_probs=122.2
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---HHHh------hh--hhhhHHHHH
Q 023037 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLT---YIKS------AV--TRNYSEKCI 97 (288)
Q Consensus 29 ~~d~~~Al~~f~~ii~~~~e~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~---~~~~------~v--~ka~~~k~i 97 (288)
.+..+.||...+..+++..-..+-+--|+.+||+=|-..|-+|-|-+.|..+.. |-.+ .+ ....=+|.|
T Consensus 82 RGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAI 161 (389)
T COG2956 82 RGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAI 161 (389)
T ss_pred cchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHH
Confidence 566778888888777764324444666777777777777766666666555543 1100 00 112233444
Q ss_pred HHHHHHhccCCCcchhh-HHHHH-HHHHHHHHHhhhh-------------hhhHHhhhhHHHHHhhhcchhHHHHHHHHH
Q 023037 98 NNIMDFVSGSASQNFSL-LREFY-QTTLKALEEAKNE-------------RLWFKTNLKLCKIWFDMGEYGRMSKILKEL 162 (288)
Q Consensus 98 ~~ild~~~~~~~~~~~~-~~~~~-~~~l~~i~~a~ne-------------r~~f~~~~kL~~lyl~~~~y~~~~~ll~el 162 (288)
..-..... +.+.++.. +-+|| +++.......+-+ +.-.|..+-+|.+++..|+|+++-+-+..+
T Consensus 162 d~A~~L~k-~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v 240 (389)
T COG2956 162 DVAERLVK-LGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERV 240 (389)
T ss_pred HHHHHHHH-cCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHH
Confidence 43222222 21111111 12222 4444443333322 333378899999999999999998888888
Q ss_pred HHhccCCCCCccccccchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhHHHH-HHhhcchhhhhhccHHHH
Q 023037 163 HKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGI-IRECGGKMHMAERQWADA 241 (288)
Q Consensus 163 kk~~~~~~~~dDk~~~~~llEv~~lE~~~y~~~~n~~kak~~y~~A~~~a~~I~~p~i~a~-I~~~~G~l~~~ekdy~~A 241 (288)
..- |. .++-||.-.-...|..+|.......-++.+......+.--.+++. |-..-|+ +.|
T Consensus 241 ~eQ--------n~---~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~--------~~A 301 (389)
T COG2956 241 LEQ--------NP---EYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGI--------DAA 301 (389)
T ss_pred HHh--------Ch---HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhCh--------HHH
Confidence 765 55 899999999999999999999999999998877776655333333 3344444 556
Q ss_pred HHHHHH
Q 023037 242 ATDFFE 247 (288)
Q Consensus 242 ~syF~E 247 (288)
..+..+
T Consensus 302 q~~l~~ 307 (389)
T COG2956 302 QAYLTR 307 (389)
T ss_pred HHHHHH
Confidence 666555
No 53
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=97.41 E-value=0.014 Score=51.16 Aligned_cols=119 Identities=13% Similarity=0.151 Sum_probs=89.7
Q ss_pred hhhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHHHHH-HHhhcC--HHHHHHHHHHHHhhhcc
Q 023037 138 TNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQM-YTETKN--NKKLKQLYQKALAIKSA 214 (288)
Q Consensus 138 ~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE~~~-y~~~~n--~~kak~~y~~A~~~a~~ 214 (288)
.-..||.+|+..|+|++|...+++..++-+ ++. +++..-..+ |...++ +.++++++.+++.....
T Consensus 75 ~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P-----~~~-------~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~ 142 (198)
T PRK10370 75 QWALLGEYYLWRNDYDNALLAYRQALQLRG-----ENA-------ELYAALATVLYYQAGQHMTPQTREMIDKALALDAN 142 (198)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-----CCH-------HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC
Confidence 345679999999999999999999999832 333 677777876 456666 59999999999887665
Q ss_pred CCChhHHHHHHhhcchhhhhhccHHHHHHHHHHHHhhhhhhCChhHHHHhHHHHHHHHhcCC
Q 023037 215 IPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLANMLMES 276 (288)
Q Consensus 215 I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EaF~~y~e~g~~~a~~~LKY~~L~~il~~~ 276 (288)
- | ......|..++..|||+.|..+|-.+.+.-.. +++++ ..+.=+-.+++|-+.
T Consensus 143 ~--~----~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~-~~~r~-~~i~~i~~a~~~~~~ 196 (198)
T PRK10370 143 E--V----TALMLLASDAFMQADYAQAIELWQKVLDLNSP-RVNRT-QLVESINMAKLLQNR 196 (198)
T ss_pred C--h----hHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CccHH-HHHHHHHHHHHHhhc
Confidence 3 2 24456688899999999999999999887655 44443 333557777777654
No 54
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=97.39 E-value=0.029 Score=52.30 Aligned_cols=73 Identities=12% Similarity=0.029 Sum_probs=62.6
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHhhhcc---CCChhHHHHHHhhcchhhhhhccHHHHHHHHHHHHhhhhhhCChh
Q 023037 187 IEIQMYTETKNNKKLKQLYQKALAIKSA---IPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQR 259 (288)
Q Consensus 187 lE~~~y~~~~n~~kak~~y~~A~~~a~~---I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EaF~~y~e~g~~~ 259 (288)
.-..++...++...+.+++......+.+ .........+..+.+..+...|||++|...+-+++.-....|-+.
T Consensus 269 ~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a~~~ggs~ 344 (355)
T cd05804 269 HAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDLARIGGSH 344 (355)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcH
Confidence 3566777888999999999999888877 444677888999999999999999999999999999998887543
No 55
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=97.36 E-value=0.012 Score=51.64 Aligned_cols=52 Identities=19% Similarity=0.378 Sum_probs=43.9
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 023037 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (288)
Q Consensus 29 ~~d~~~Al~~f~~ii~~~~e~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~ 84 (288)
..++++++..++..+..+++.. .+...||.+|...|+++++++.|++.+.+.
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~----~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~ 103 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNS----EQWALLGEYYLWRNDYDNALLAYRQALQLR 103 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 5677999999999999887532 244789999999999999999999888776
No 56
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=97.36 E-value=0.038 Score=58.05 Aligned_cols=202 Identities=10% Similarity=0.009 Sum_probs=125.8
Q ss_pred HHHHHHHHHhhcCC---cc-chhhHHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhccC
Q 023037 33 EGALAGFAEVVAME---PE-KAEWGFKALKQ-TVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGS 107 (288)
Q Consensus 33 ~~Al~~f~~ii~~~---~e-~~~~~~kal~~-l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~~~~~ 107 (288)
++|++.|+..+... ++ ... ...+... ++.+ ..+|+++++...|+.++.-- +.++.. +.-.+- +....
T Consensus 213 d~Al~~~~~ll~~~~~~p~~~~~-~~~a~~d~l~~L-l~~g~~~eA~~~~~~ll~~~-~~~P~~-a~~~la---~~yl~- 284 (765)
T PRK10049 213 DRALAQYDALEALWHDNPDATAD-YQRARIDRLGAL-LARDRYKDVISEYQRLKAEG-QIIPPW-AQRWVA---SAYLK- 284 (765)
T ss_pred HHHHHHHHHHHhhcccCCccchH-HHHHHHHHHHHH-HHhhhHHHHHHHHHHhhccC-CCCCHH-HHHHHH---HHHHh-
Confidence 77899999888652 22 222 2333333 5545 57799999999999987652 222211 111111 11111
Q ss_pred CCcchhhHHHHHHHHHHHHHHhhhh-hhhHHhhhhHHHHHhhhcchhHHHHHHHHHHHhccCCCC---CccccccchHHH
Q 023037 108 ASQNFSLLREFYQTTLKALEEAKNE-RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDG---TDDQKKGSQLLE 183 (288)
Q Consensus 108 ~~~~~~~~~~~~~~~l~~i~~a~ne-r~~f~~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~---~dDk~~~~~llE 183 (288)
. .+++.....|+..+ +..... .........|+.++++.|++++|..+++++....+.... .-....+..-++
T Consensus 285 ~-g~~e~A~~~l~~~l---~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~ 360 (765)
T PRK10049 285 L-HQPEKAQSILTELF---YHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQ 360 (765)
T ss_pred c-CCcHHHHHHHHHHh---hcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHH
Confidence 1 22334444444332 211111 112345678888899999999999999998876321000 000011123468
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhHHHHHHhhcchhhhhhccHHHHHHHHHHHHhhh
Q 023037 184 VYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (288)
Q Consensus 184 v~~lE~~~y~~~~n~~kak~~y~~A~~~a~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EaF~~y 252 (288)
++.+++.++...+++++|.+.+.++.... |.- ..+...-|.++...++++.|...+-++.+..
T Consensus 361 a~~~~a~~l~~~g~~~eA~~~l~~al~~~-----P~n-~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~ 423 (765)
T PRK10049 361 GQSLLSQVAKYSNDLPQAEMRARELAYNA-----PGN-QGLRIDYASVLQARGWPRAAENELKKAEVLE 423 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Confidence 88999999999999999999999987663 322 2466677889999999999999999998854
No 57
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=97.33 E-value=0.02 Score=61.89 Aligned_cols=96 Identities=9% Similarity=0.081 Sum_probs=76.3
Q ss_pred HhhhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCC
Q 023037 137 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP 216 (288)
Q Consensus 137 ~~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE~~~y~~~~n~~kak~~y~~A~~~a~~I~ 216 (288)
....++|.++.+.|+++++...+++..+.-+ ++. +++..-..+|..+|++..|...|.+|....
T Consensus 644 ~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P-----~~~-------~a~~nLA~al~~lGd~~eA~~~l~~Al~l~---- 707 (987)
T PRK09782 644 NYQAALGYALWDSGDIAQSREMLERAHKGLP-----DDP-------ALIRQLAYVNQRLDDMAATQHYARLVIDDI---- 707 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-----CCH-------HHHHHHHHHHHHCCCHHHHHHHHHHHHhcC----
Confidence 5678999999999999999999999988722 333 778888999999999999999999998776
Q ss_pred ChhHHHHHHhhcchhhhhhccHHHHHHHHHHHHh
Q 023037 217 HPRIMGIIRECGGKMHMAERQWADAATDFFEAFK 250 (288)
Q Consensus 217 ~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EaF~ 250 (288)
| =.+.|+..-|.+...+.+|..|.+....+..
T Consensus 708 -P-~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~ 739 (987)
T PRK09782 708 -D-NQALITPLTPEQNQQRFNFRRLHEEVGRRWT 739 (987)
T ss_pred -C-CCchhhhhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 3 3455666777777777777777776655543
No 58
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.32 E-value=0.007 Score=46.74 Aligned_cols=103 Identities=15% Similarity=0.211 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHHHHhhhhhh
Q 023037 55 KALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERL 134 (288)
Q Consensus 55 kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~~~~~~~~~~~~~~~~~~~~l~~i~~a~ner~ 134 (288)
+.+.++|..+.++|+++++.+++.+++... +. ...
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~--------------------------------------------~~~ 37 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKY-PK--------------------------------------------STY 37 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CC--------------------------------------------ccc
Confidence 567899999999999999999988875543 21 112
Q ss_pred hHHhhhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhh
Q 023037 135 WFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAI 211 (288)
Q Consensus 135 ~f~~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE~~~y~~~~n~~kak~~y~~A~~~ 211 (288)
.......+|.+++..|+|++|...++++.+..+.. ....+++...+.+|..++++.+|...|..+...
T Consensus 38 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~---------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 38 APNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKS---------PKAPDALLKLGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred cHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCC---------CcccHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 22345678999999999999999999998873321 233477888888899999999999999988766
No 59
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.30 E-value=0.0029 Score=64.07 Aligned_cols=133 Identities=15% Similarity=0.146 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHHHHhh-hh
Q 023037 54 FKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAK-NE 132 (288)
Q Consensus 54 ~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~~~~~~~~~~~~~~~~~~~~l~~i~~a~-ne 132 (288)
..|.+-||.+|.++++++.|.-+|+..+.+. |.- .. |+-.++.+. ...+..+.++..++.|- -+
T Consensus 489 YnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~n---sv------i~~~~g~~~-----~~~k~~d~AL~~~~~A~~ld 553 (638)
T KOG1126|consen 489 YNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSN---SV------ILCHIGRIQ-----HQLKRKDKALQLYEKAIHLD 553 (638)
T ss_pred hHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccc---hh------HHhhhhHHH-----HHhhhhhHHHHHHHHHHhcC
Confidence 5678999999999999999999999998877 531 11 111233221 33445566666666543 11
Q ss_pred hhhHHhhhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 023037 133 RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (288)
Q Consensus 133 r~~f~~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE~~~y~~~~n~~kak~~y~~A~~~a 212 (288)
..--=...+.|.+++..++|++|...|.||+.+.+ ||. -||++-+++|..+|+...|.--++=|....
T Consensus 554 ~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP-----~es-------~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 554 PKNPLCKYHRASILFSLGRYVEALQELEELKELVP-----QES-------SVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred CCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCc-----chH-------HHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 22223345789999999999999999999999954 443 789999999999999999998888777654
Q ss_pred c
Q 023037 213 S 213 (288)
Q Consensus 213 ~ 213 (288)
-
T Consensus 622 p 622 (638)
T KOG1126|consen 622 P 622 (638)
T ss_pred C
Confidence 4
No 60
>PRK12370 invasion protein regulator; Provisional
Probab=97.29 E-value=0.013 Score=59.11 Aligned_cols=196 Identities=8% Similarity=-0.051 Sum_probs=123.2
Q ss_pred HHHhhccc----CCCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHH---------HcCCHHHHHHHHHHHHHHHHh
Q 023037 20 CSILEKGL----VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYY---------RLGKYKEMMDAYREMLTYIKS 86 (288)
Q Consensus 20 ~y~~ak~~----~~~d~~~Al~~f~~ii~~~~e~~~~~~kal~~l~~l~~---------~~g~~~~~l~~~~~~l~~~~~ 86 (288)
+|+.+... ..++.++|++.|++.++.+|+.. .++..++.+|. ..++++++...+++.+..- |
T Consensus 261 ~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a----~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P 335 (553)
T PRK12370 261 VYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSI----APYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-H 335 (553)
T ss_pred HHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccH----HHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-C
Confidence 66666543 23345799999999999987532 23345555444 3456899999999998886 6
Q ss_pred hhhhhhHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHHHHhhhhhhhHHhhhhHHHHHhhhcchhHHHHHHHHHHHhc
Q 023037 87 AVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSC 166 (288)
Q Consensus 87 ~v~ka~~~k~i~~ild~~~~~~~~~~~~~~~~~~~~l~~i~~a~ner~~f~~~~kL~~lyl~~~~y~~~~~ll~elkk~~ 166 (288)
.-+.+....+. +.... .+.+.....++.+++ -..+. ......+|.++...|++++|...+++..+..
T Consensus 336 ~~~~a~~~lg~------~~~~~-g~~~~A~~~~~~Al~---l~P~~---~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~ 402 (553)
T PRK12370 336 NNPQALGLLGL------INTIH-SEYIVGSLLFKQANL---LSPIS---ADIKYYYGWNLFMAGQLEEALQTINECLKLD 402 (553)
T ss_pred CCHHHHHHHHH------HHHHc-cCHHHHHHHHHHHHH---hCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 55544443322 11111 123344444444433 22222 2356788999999999999999999998883
Q ss_pred cCCCCCccccccchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhHHHHHHhhcchhhhhhccHHHHHHHHH
Q 023037 167 QREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFF 246 (288)
Q Consensus 167 ~~~~~~dDk~~~~~llEv~~lE~~~y~~~~n~~kak~~y~~A~~~a~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~ 246 (288)
+. +. ..+..-..+++..+++.+|.+.+.+++.... -.+|.. ....|.+|...|+++.|...|-
T Consensus 403 P~-----~~-------~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~-p~~~~~----~~~la~~l~~~G~~~eA~~~~~ 465 (553)
T PRK12370 403 PT-----RA-------AAGITKLWITYYHTGIDDAIRLGDELRSQHL-QDNPIL----LSMQVMFLSLKGKHELARKLTK 465 (553)
T ss_pred CC-----Ch-------hhHHHHHHHHHhccCHHHHHHHHHHHHHhcc-ccCHHH----HHHHHHHHHhCCCHHHHHHHHH
Confidence 32 21 1222223356668899999999998765431 112332 2445777888999999999986
Q ss_pred HHHh
Q 023037 247 EAFK 250 (288)
Q Consensus 247 EaF~ 250 (288)
+...
T Consensus 466 ~~~~ 469 (553)
T PRK12370 466 EIST 469 (553)
T ss_pred Hhhh
Confidence 6443
No 61
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.29 E-value=0.034 Score=54.78 Aligned_cols=231 Identities=16% Similarity=0.247 Sum_probs=132.3
Q ss_pred CCCCHHHHHHHHHHhhcCCcc-chhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhh--------------hhhh
Q 023037 28 VETDPEGALAGFAEVVAMEPE-KAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAV--------------TRNY 92 (288)
Q Consensus 28 ~~~d~~~Al~~f~~ii~~~~e-~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v--------------~ka~ 92 (288)
+..++.+||++|.-.++.-+. .-...-|-+.++|..+.+.|+|++++..|.++.+-. +++ ...+
T Consensus 249 kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~-pn~~a~~nl~i~~f~i~d~ek 327 (840)
T KOG2003|consen 249 KKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEA-PNFIAALNLIICAFAIGDAEK 327 (840)
T ss_pred ehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhC-ccHHhhhhhhhhheecCcHHH
Confidence 467777888888777776442 122234666666666666666666666666555433 321 1333
Q ss_pred HHHHHHHHHHHhccCCC-----------------------------cchhhHHHH-------------------HHHHHH
Q 023037 93 SEKCINNIMDFVSGSAS-----------------------------QNFSLLREF-------------------YQTTLK 124 (288)
Q Consensus 93 ~~k~i~~ild~~~~~~~-----------------------------~~~~~~~~~-------------------~~~~l~ 124 (288)
.-+.+.++||.=+.+.+ .+-...++. ++-|++
T Consensus 328 mkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle 407 (840)
T KOG2003|consen 328 MKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLE 407 (840)
T ss_pred HHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHH
Confidence 34444444442221110 000111111 234444
Q ss_pred HHHHhhhhhhhHHhhhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHHHHHHHhhcCHHHHHHH
Q 023037 125 ALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQL 204 (288)
Q Consensus 125 ~i~~a~ner~~f~~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE~~~y~~~~n~~kak~~ 204 (288)
.++.+.--.+-..++++.+.-|+.+|+|..+.++|+-+.+. |.+.++.---.+-+ ......-+++..|.++
T Consensus 408 ~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~k-------dnk~~saaa~nl~~--l~flqggk~~~~aqqy 478 (840)
T KOG2003|consen 408 SLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKK-------DNKTASAAANNLCA--LRFLQGGKDFADAQQY 478 (840)
T ss_pred HHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhc-------cchhhHHHhhhhHH--HHHHhcccchhHHHHH
Confidence 44444333445588999999999999999999999988888 66644322211111 1122234578888888
Q ss_pred HHHHHhhhccCCChhHHHHHHhhcchhhhhhccHHHHHHHHHHHHhhhhh--------------hCC-hhHHHHhHHHHH
Q 023037 205 YQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDE--------------AGN-QRRIQCLKYLVL 269 (288)
Q Consensus 205 y~~A~~~a~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EaF~~y~e--------------~g~-~~a~~~LKY~~L 269 (288)
-..|+.+.. |.|.- ..--|.+-+-.|||++|...+.||+.|=.. .|+ .+++.| ++-|
T Consensus 479 ad~aln~dr--yn~~a----~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~--f~kl 550 (840)
T KOG2003|consen 479 ADIALNIDR--YNAAA----LTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDC--FLKL 550 (840)
T ss_pred HHHHhcccc--cCHHH----hhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHH--HHHH
Confidence 777766543 33222 123466667789999999999999876332 333 356666 4555
Q ss_pred HHHhcCC
Q 023037 270 ANMLMES 276 (288)
Q Consensus 270 ~~il~~~ 276 (288)
--||.|+
T Consensus 551 h~il~nn 557 (840)
T KOG2003|consen 551 HAILLNN 557 (840)
T ss_pred HHHHHhh
Confidence 5555544
No 62
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=97.29 E-value=0.014 Score=61.59 Aligned_cols=196 Identities=15% Similarity=0.125 Sum_probs=128.0
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhccCC
Q 023037 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (288)
Q Consensus 29 ~~d~~~Al~~f~~ii~~~~e~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~~~~~~ 108 (288)
.+|+..+..+....+... +..-....+++++|+.|-.+|++++|..||.+++..-... -+|-.++-.+
T Consensus 283 K~dy~~v~~la~~ai~~t-~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~-----------~~l~~~GlgQ 350 (1018)
T KOG2002|consen 283 KKDYERVWHLAEHAIKNT-ENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDN-----------FVLPLVGLGQ 350 (1018)
T ss_pred cccHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCC-----------ccccccchhH
Confidence 355566666655555432 2233467889999999999999999999999988766222 1122222111
Q ss_pred ----CcchhhHHHHHHHHHHHHHHhhhhhhhHHhhhhHHHHHhhhc----chhHHHHHHHHHHHhccCCCCCccccccch
Q 023037 109 ----SQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMG----EYGRMSKILKELHKSCQREDGTDDQKKGSQ 180 (288)
Q Consensus 109 ----~~~~~~~~~~~~~~l~~i~~a~ner~~f~~~~kL~~lyl~~~----~y~~~~~ll~elkk~~~~~~~~dDk~~~~~ 180 (288)
..+.+.....++..++. ..--+.+.-=||.||...+ .-+++..++.++.+... +|.
T Consensus 351 m~i~~~dle~s~~~fEkv~k~------~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~-----~d~----- 414 (1018)
T KOG2002|consen 351 MYIKRGDLEESKFCFEKVLKQ------LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTP-----VDS----- 414 (1018)
T ss_pred HHHHhchHHHHHHHHHHHHHh------CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhccc-----ccH-----
Confidence 11122222222222221 1122344556888888886 34446777777766631 343
Q ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhHHHHHHhhcchhhhhhccHHHHHHHHHHHHhhhhhhC
Q 023037 181 LLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAG 256 (288)
Q Consensus 181 llEv~~lE~~~y~~~~n~~kak~~y~~A~~~a~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EaF~~y~e~g 256 (288)
|.++.-.++| .++|..++..+|+.|+.+--...+| +..++----|-+|+.-|++..|...|-+|..-..+..
T Consensus 415 --~a~l~laql~-e~~d~~~sL~~~~~A~d~L~~~~~~-ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~ 486 (1018)
T KOG2002|consen 415 --EAWLELAQLL-EQTDPWASLDAYGNALDILESKGKQ-IPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVA 486 (1018)
T ss_pred --HHHHHHHHHH-HhcChHHHHHHHHHHHHHHHHcCCC-CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhc
Confidence 6666666666 4677777799999999887777777 7777778889999999999999999999988765433
No 63
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.29 E-value=0.04 Score=50.40 Aligned_cols=178 Identities=12% Similarity=0.122 Sum_probs=127.1
Q ss_pred hhhHHHHHHhhcc-cCCCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhh
Q 023037 14 TVSRVLCSILEKG-LVETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNY 92 (288)
Q Consensus 14 ~~~~~~~y~~ak~-~~~~d~~~Al~~f~~ii~~~~e~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~ 92 (288)
..+.-.+|-++.. +..+|.++|++.|+.+...- ..+.|..++...++-.+.+.+++++++..+.+++... |.-+..-
T Consensus 31 ~~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~-p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ly-P~~~n~d 108 (254)
T COG4105 31 NLPASELYNEGLTELQKGNYEEAIKYFEALDSRH-PFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLY-PTHPNAD 108 (254)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC-CCCCChh
Confidence 3466678888776 57899999999999997543 3678999999999999999999999999999999988 6533333
Q ss_pred HHHHHHHHHHHhccCC--CcchhhHHHHHHHHHHHHHHhhhh--------hhhH------HhhhhHHHHHhhhcchhHHH
Q 023037 93 SEKCINNIMDFVSGSA--SQNFSLLREFYQTTLKALEEAKNE--------RLWF------KTNLKLCKIWFDMGEYGRMS 156 (288)
Q Consensus 93 ~~k~i~~ild~~~~~~--~~~~~~~~~~~~~~l~~i~~a~ne--------r~~f------~~~~kL~~lyl~~~~y~~~~ 156 (288)
=+-=|+.+. .+-.++ +.+......-+.-..+.|+.-.|. |..+ .-++-+|+.|+..|.|-.+.
T Consensus 109 Y~~YlkgLs-~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~ 187 (254)
T COG4105 109 YAYYLKGLS-YFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAI 187 (254)
T ss_pred HHHHHHHHH-HhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHH
Confidence 333333333 333342 256667777777777777753322 2222 55788899999999999876
Q ss_pred HHHHHHHHhccCCCCCccccccchHHHHHHHHHHHHHhhcCHHHHHH
Q 023037 157 KILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQ 203 (288)
Q Consensus 157 ~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE~~~y~~~~n~~kak~ 203 (288)
.=.+++.+--++ . +..-|.+..--+.|..+|....|..
T Consensus 188 nR~~~v~e~y~~------t---~~~~eaL~~l~eaY~~lgl~~~a~~ 225 (254)
T COG4105 188 NRFEEVLENYPD------T---SAVREALARLEEAYYALGLTDEAKK 225 (254)
T ss_pred HHHHHHHhcccc------c---cchHHHHHHHHHHHHHhCChHHHHH
Confidence 666666555332 2 5556778888888888887666553
No 64
>PLN03218 maturation of RBCL 1; Provisional
Probab=97.28 E-value=0.031 Score=60.81 Aligned_cols=133 Identities=15% Similarity=0.161 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHHHHhhhhhhh
Q 023037 56 ALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLW 135 (288)
Q Consensus 56 al~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~~~~~~~~~~~~~~~~~~~~l~~i~~a~ner~~ 135 (288)
++..++..|++.|++++|+++|.++...- +.. .....+.+|+.+..... .+...++..+..+....-.--
T Consensus 509 TynaLI~gy~k~G~~eeAl~lf~~M~~~G---v~P--D~vTYnsLI~a~~k~G~-----~deA~~lf~eM~~~~~gi~PD 578 (1060)
T PLN03218 509 TFGALIDGCARAGQVAKAFGAYGIMRSKN---VKP--DRVVFNALISACGQSGA-----VDRAFDVLAEMKAETHPIDPD 578 (1060)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHcC---CCC--CHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHhcCCCCCc
Confidence 34455666666666666666666553311 111 13355666665554321 222222222221110000111
Q ss_pred HHhhhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Q 023037 136 FKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKAL 209 (288)
Q Consensus 136 f~~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE~~~y~~~~n~~kak~~y~~A~ 209 (288)
..+..-++..|...|++++|.++++++.+.--.+ + ..+|..-+..|...|++.+|..+|....
T Consensus 579 ~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p----~-------~~tynsLI~ay~k~G~~deAl~lf~eM~ 641 (1060)
T PLN03218 579 HITVGALMKACANAGQVDRAKEVYQMIHEYNIKG----T-------PEVYTIAVNSCSQKGDWDFALSIYDDMK 641 (1060)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC----C-------hHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 2456677788888888888888888887761111 1 1445555555666666666666665544
No 65
>PRK11189 lipoprotein NlpI; Provisional
Probab=97.27 E-value=0.017 Score=53.59 Aligned_cols=168 Identities=15% Similarity=0.241 Sum_probs=86.9
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHH-----------
Q 023037 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCI----------- 97 (288)
Q Consensus 29 ~~d~~~Al~~f~~ii~~~~e~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i----------- 97 (288)
.++.+.|+..|++.+..+++. ..++..+|.++...|+++++.+.|.+.+..- |.-..+..-.++
T Consensus 77 ~g~~~~A~~~~~~Al~l~P~~----~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA 151 (296)
T PRK11189 77 LGLRALARNDFSQALALRPDM----ADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGIALYYGGRYELA 151 (296)
T ss_pred CCCHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 467778888888888776543 2456777778888888888887777777665 433222211111
Q ss_pred -HHHHHHhccCCCcchhhH-------HHHHHHHHHHHHHhh---hhhhhHHhhhhHHHHHhhhcchhHHHHHHHHHHHhc
Q 023037 98 -NNIMDFVSGSASQNFSLL-------REFYQTTLKALEEAK---NERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSC 166 (288)
Q Consensus 98 -~~ild~~~~~~~~~~~~~-------~~~~~~~l~~i~~a~---ner~~f~~~~kL~~lyl~~~~y~~~~~ll~elkk~~ 166 (288)
..+-..+...|+.....+ ...++.+++.++..- +...|. .+..++..|++.+. ..+..+.+.+
T Consensus 152 ~~~~~~al~~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~-----~~~~~~~lg~~~~~-~~~~~~~~~~ 225 (296)
T PRK11189 152 QDDLLAFYQDDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKEQWG-----WNIVEFYLGKISEE-TLMERLKAGA 225 (296)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCccccH-----HHHHHHHccCCCHH-HHHHHHHhcC
Confidence 111011111111000000 000111111111100 112221 23333445555443 2444444433
Q ss_pred cCCCCCccccccchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 023037 167 QREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (288)
Q Consensus 167 ~~~~~~dDk~~~~~llEv~~lE~~~y~~~~n~~kak~~y~~A~~~a 212 (288)
+.. ...+.-+.|.|..-+.+|..+|++.+|..+|.+|..+.
T Consensus 226 ~~~-----~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 226 TDN-----TELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred CCc-----HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 211 11113456899999999999999999999999998655
No 66
>PRK12370 invasion protein regulator; Provisional
Probab=97.17 E-value=0.055 Score=54.65 Aligned_cols=154 Identities=8% Similarity=-0.018 Sum_probs=100.4
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhccCC
Q 023037 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (288)
Q Consensus 29 ~~d~~~Al~~f~~ii~~~~e~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~~~~~~ 108 (288)
.+++++|++.+++.++.+++.. .++..+|.++..+|+++++...|++.+..- |.-+.+....+.- +.. .
T Consensus 317 ~~~~~~A~~~~~~Al~ldP~~~----~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~-----l~~-~ 385 (553)
T PRK12370 317 QNAMIKAKEHAIKATELDHNNP----QALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWN-----LFM-A 385 (553)
T ss_pred chHHHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH-----HHH-C
Confidence 3457899999999999887533 356678999999999999999999999887 6644433222111 111 1
Q ss_pred CcchhhHHHHHHHHHHHHHHhhhhhhhHHhhhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHH
Q 023037 109 SQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIE 188 (288)
Q Consensus 109 ~~~~~~~~~~~~~~l~~i~~a~ner~~f~~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE 188 (288)
++.+.....++.++ +-....-. ....++.+++..|+|++|...++++.+... + ++. ..+..-
T Consensus 386 -G~~~eAi~~~~~Al---~l~P~~~~---~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~-p---~~~-------~~~~~l 447 (553)
T PRK12370 386 -GQLEEALQTINECL---KLDPTRAA---AGITKLWITYYHTGIDDAIRLGDELRSQHL-Q---DNP-------ILLSMQ 447 (553)
T ss_pred -CCHHHHHHHHHHHH---hcCCCChh---hHHHHHHHHHhccCHHHHHHHHHHHHHhcc-c---cCH-------HHHHHH
Confidence 12323333333333 32222211 122345567778999999999888776521 1 222 456777
Q ss_pred HHHHHhhcCHHHHHHHHHHHHhh
Q 023037 189 IQMYTETKNNKKLKQLYQKALAI 211 (288)
Q Consensus 189 ~~~y~~~~n~~kak~~y~~A~~~ 211 (288)
+.+|..+|++.+|++.+.+.+..
T Consensus 448 a~~l~~~G~~~eA~~~~~~~~~~ 470 (553)
T PRK12370 448 VMFLSLKGKHELARKLTKEISTQ 470 (553)
T ss_pred HHHHHhCCCHHHHHHHHHHhhhc
Confidence 88888999999999998775433
No 67
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=97.16 E-value=0.014 Score=60.44 Aligned_cols=179 Identities=9% Similarity=0.016 Sum_probs=113.9
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhccCC
Q 023037 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (288)
Q Consensus 29 ~~d~~~Al~~f~~ii~~~~e~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~~~~~~ 108 (288)
.++.+.|.+.|.++.+. +. .++..++..|.+.|+.++|+++++++..- .+. -.....+.+|..++...
T Consensus 373 ~G~~~~A~~vf~~m~~~--d~-----~t~n~lI~~y~~~G~~~~A~~lf~~M~~~---g~~--Pd~~T~~~ll~a~~~~g 440 (697)
T PLN03081 373 WGRMEDARNVFDRMPRK--NL-----ISWNALIAGYGNHGRGTKAVEMFERMIAE---GVA--PNHVTFLAVLSACRYSG 440 (697)
T ss_pred CCCHHHHHHHHHhCCCC--Ce-----eeHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCC--CCHHHHHHHHHHHhcCC
Confidence 45667777777766542 22 34567888888888888888888887642 111 12334677777776543
Q ss_pred CcchhhHHHHHHHHHHHHHHhhhh---hhhHHhhhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHH
Q 023037 109 SQNFSLLREFYQTTLKALEEAKNE---RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVY 185 (288)
Q Consensus 109 ~~~~~~~~~~~~~~l~~i~~a~ne---r~~f~~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~ 185 (288)
.+ +.+.+.++....+ .-...++.-++.+|...|++++|.+++++.. .. .|. .+|
T Consensus 441 -----~~----~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~---~~----p~~-------~~~ 497 (697)
T PLN03081 441 -----LS----EQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAP---FK----PTV-------NMW 497 (697)
T ss_pred -----cH----HHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCC---CC----CCH-------HHH
Confidence 22 2223333332221 1222467778999999999999998886531 11 122 457
Q ss_pred HHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhHHHHHHhhcchhhhhhccHHHHHHHHHHH
Q 023037 186 AIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEA 248 (288)
Q Consensus 186 ~lE~~~y~~~~n~~kak~~y~~A~~~a~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~Ea 248 (288)
..-+..|...||+..++.++.+...+... -.+ ...+-+.+|+..|+|+.|...|-+-
T Consensus 498 ~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~-----~~~-~y~~L~~~y~~~G~~~~A~~v~~~m 554 (697)
T PLN03081 498 AALLTACRIHKNLELGRLAAEKLYGMGPE-----KLN-NYVVLLNLYNSSGRQAEAAKVVETL 554 (697)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHhCCCCC-----CCc-chHHHHHHHHhCCCHHHHHHHHHHH
Confidence 77778899999999999998887654321 111 1223455789999999999888654
No 68
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.13 E-value=0.065 Score=51.57 Aligned_cols=228 Identities=16% Similarity=0.118 Sum_probs=153.3
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhccCC
Q 023037 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (288)
Q Consensus 29 ~~d~~~Al~~f~~ii~~~~e~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~~~~~~ 108 (288)
..++++||..+.++++.-.+... .|..|--+......+|.|++|+.+--.....+.+. +.+...... +.++.
T Consensus 19 s~~~~~al~~w~~~L~~l~~~~~-Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~------~ds~~~~ea-~lnla 90 (518)
T KOG1941|consen 19 SNQTEKALQVWTKVLEKLSDLMG-RFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTAREL------EDSDFLLEA-YLNLA 90 (518)
T ss_pred CchHHHHHHHHHHHHHHHHHHHH-HHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHH------HHHHHHHHH-HHHHH
Confidence 45778999999999986434333 58899999999999999999987644333333121 111111111 11110
Q ss_pred CcchhhHHHHHHHHHHHHHHhh------hhhhhHHhhhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHH
Q 023037 109 SQNFSLLREFYQTTLKALEEAK------NERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLL 182 (288)
Q Consensus 109 ~~~~~~~~~~~~~~l~~i~~a~------ner~~f~~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~ll 182 (288)
. ..+.+ ..+..|..+-.|+- ..+.-+...+-+++.++..+.|+++.+.++...++.-+. ||. .+-+
T Consensus 91 r-~~e~l-~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~---~D~---~LEl 162 (518)
T KOG1941|consen 91 R-SNEKL-CEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNN---DDA---MLEL 162 (518)
T ss_pred H-HHHHH-HHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhcc---CCc---eeee
Confidence 0 01111 12233444444432 114445677789999999999999999999999986655 787 7778
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCC----ChhHHHHHHhhcchhhhhhccHHHHHHHHHHHHhhhhhhCCh
Q 023037 183 EVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP----HPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQ 258 (288)
Q Consensus 183 Ev~~lE~~~y~~~~n~~kak~~y~~A~~~a~~I~----~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EaF~~y~e~g~~ 258 (288)
.|+.--+.+|..++|+.|+.-...+|..+.+++. |..--+.+...-..-+-..|..-.|..+.-||.+..-+.||
T Consensus 163 qvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gd- 241 (518)
T KOG1941|consen 163 QVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGD- 241 (518)
T ss_pred ehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCC-
Confidence 8999999999999999999999999999999877 22333333333333344556667889999999999998885
Q ss_pred hHHHHhHHHHHHHHh
Q 023037 259 RRIQCLKYLVLANML 273 (288)
Q Consensus 259 ~a~~~LKY~~L~~il 273 (288)
+++++.=-.+++-|-
T Consensus 242 ra~~arc~~~~aDIy 256 (518)
T KOG1941|consen 242 RALQARCLLCFADIY 256 (518)
T ss_pred hHHHHHHHHHHHHHH
Confidence 566666566666664
No 69
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.12 E-value=0.021 Score=47.39 Aligned_cols=123 Identities=11% Similarity=0.115 Sum_probs=92.0
Q ss_pred HHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhccCCCcchhhH
Q 023037 36 LAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLL 115 (288)
Q Consensus 36 l~~f~~ii~~~~e~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~~~~~~~~~~~~~ 115 (288)
...|+++++.+++. +..+|.++.+.|++++++++|+..+..- +.
T Consensus 13 ~~~~~~al~~~p~~-------~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~---------------------------- 56 (144)
T PRK15359 13 EDILKQLLSVDPET-------VYASGYASWQEGDYSRAVIDFSWLVMAQ-PW---------------------------- 56 (144)
T ss_pred HHHHHHHHHcCHHH-------HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CC----------------------------
Confidence 45677888777642 3467999999999999999998875543 21
Q ss_pred HHHHHHHHHHHHHhhhhhhhHHhhhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHHHHHHHhh
Q 023037 116 REFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTET 195 (288)
Q Consensus 116 ~~~~~~~l~~i~~a~ner~~f~~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE~~~y~~~ 195 (288)
.......+|.++...|+|.+|...++...+..+ ++. +.+..-+.++..+
T Consensus 57 -------------------~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p-----~~~-------~a~~~lg~~l~~~ 105 (144)
T PRK15359 57 -------------------SWRAHIALAGTWMMLKEYTTAINFYGHALMLDA-----SHP-------EPVYQTGVCLKMM 105 (144)
T ss_pred -------------------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-----CCc-------HHHHHHHHHHHHc
Confidence 012346788899999999999999999988732 333 6777778888999
Q ss_pred cCHHHHHHHHHHHHhhhccCCC-hhHHHHHH
Q 023037 196 KNNKKLKQLYQKALAIKSAIPH-PRIMGIIR 225 (288)
Q Consensus 196 ~n~~kak~~y~~A~~~a~~I~~-p~i~a~I~ 225 (288)
|++.+|...|..|+......+. ..+.|.+.
T Consensus 106 g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~ 136 (144)
T PRK15359 106 GEPGLAREAFQTAIKMSYADASWSEIRQNAQ 136 (144)
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 9999999999999888776666 34444443
No 70
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=97.00 E-value=0.024 Score=54.98 Aligned_cols=143 Identities=9% Similarity=0.047 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHHHHhhhhh
Q 023037 54 FKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNER 133 (288)
Q Consensus 54 ~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~~~~~~~~~~~~~~~~~~~~l~~i~~a~ner 133 (288)
......++.++...|+++++.+.+.+.+.-. +.-.... -..++. +...... ......+.+...++...++.
T Consensus 263 ~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~-pd~~~~~-~~~l~~----~~~l~~~---~~~~~~~~~e~~lk~~p~~~ 333 (409)
T TIGR00540 263 IALKIALAEHLIDCDDHDSAQEIIFDGLKKL-GDDRAIS-LPLCLP----IPRLKPE---DNEKLEKLIEKQAKNVDDKP 333 (409)
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHhhC-CCcccch-hHHHHH----hhhcCCC---ChHHHHHHHHHHHHhCCCCh
Confidence 4556677888999999999999998888865 4321100 012222 2222111 22333444444444333333
Q ss_pred hhHHhhhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhc
Q 023037 134 LWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKS 213 (288)
Q Consensus 134 ~~f~~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE~~~y~~~~n~~kak~~y~~A~~~a~ 213 (288)
. ..+..-+|.+++..|+|++|.+.++.....-..| |+ |++..=+.++..+|+..+|+..|++++....
T Consensus 334 ~-~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p---~~--------~~~~~La~ll~~~g~~~~A~~~~~~~l~~~~ 401 (409)
T TIGR00540 334 K-CCINRALGQLLMKHGEFIEAADAFKNVAACKEQL---DA--------NDLAMAADAFDQAGDKAEAAAMRQDSLGLML 401 (409)
T ss_pred h-HHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCC---CH--------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 2 4567788999999999999999888544442222 22 3344448889999999999999999999998
Q ss_pred cCCC
Q 023037 214 AIPH 217 (288)
Q Consensus 214 ~I~~ 217 (288)
++++
T Consensus 402 ~~~~ 405 (409)
T TIGR00540 402 AIQD 405 (409)
T ss_pred cccc
Confidence 8887
No 71
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=97.00 E-value=0.039 Score=57.05 Aligned_cols=186 Identities=12% Similarity=0.047 Sum_probs=101.3
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhccCC
Q 023037 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (288)
Q Consensus 29 ~~d~~~Al~~f~~ii~~~~e~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~~~~~~ 108 (288)
.++.++|.+.|.++... + ..++..++..|.+.|++++|+++|.++..-- +.. ....++.++..+....
T Consensus 272 ~g~~~~A~~vf~~m~~~--~-----~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g---~~p--d~~t~~~ll~a~~~~g 339 (697)
T PLN03081 272 CGDIEDARCVFDGMPEK--T-----TVAWNSMLAGYALHGYSEEALCLYYEMRDSG---VSI--DQFTFSIMIRIFSRLA 339 (697)
T ss_pred CCCHHHHHHHHHhCCCC--C-----hhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC---CCC--CHHHHHHHHHHHHhcc
Confidence 57889999999877432 2 2456789999999999999999999885421 111 1224555555554321
Q ss_pred CcchhhHHHHH----------------------------HHHHHHHHHhhhhhhhHHhhhhHHHHHhhhcchhHHHHHHH
Q 023037 109 SQNFSLLREFY----------------------------QTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILK 160 (288)
Q Consensus 109 ~~~~~~~~~~~----------------------------~~~l~~i~~a~ner~~f~~~~kL~~lyl~~~~y~~~~~ll~ 160 (288)
. .+...+.+ +.+.+.++... +....+..-++..|...|+.++|.++++
T Consensus 340 ~--~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~--~~d~~t~n~lI~~y~~~G~~~~A~~lf~ 415 (697)
T PLN03081 340 L--LEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP--RKNLISWNALIAGYGNHGRGTKAVEMFE 415 (697)
T ss_pred c--hHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC--CCCeeeHHHHHHHHHHcCCHHHHHHHHH
Confidence 1 11111111 12222222211 1122345566666777777777777777
Q ss_pred HHHHhccCCCCCccccccchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhHHHHHHhhcchhhhhhccHHH
Q 023037 161 ELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWAD 240 (288)
Q Consensus 161 elkk~~~~~~~~dDk~~~~~llEv~~lE~~~y~~~~n~~kak~~y~~A~~~a~~I~~p~i~a~I~~~~G~l~~~ekdy~~ 240 (288)
+..+.=-.| |. ..|..-+..+...|+..++..++........-.|.. ....|-..++...|+++.
T Consensus 416 ~M~~~g~~P---d~--------~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~----~~y~~li~~l~r~G~~~e 480 (697)
T PLN03081 416 RMIAEGVAP---NH--------VTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRA----MHYACMIELLGREGLLDE 480 (697)
T ss_pred HHHHhCCCC---CH--------HHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCc----cchHhHHHHHHhcCCHHH
Confidence 666542222 11 235555566667777777777776665432222221 112233344566777777
Q ss_pred HHHHH
Q 023037 241 AATDF 245 (288)
Q Consensus 241 A~syF 245 (288)
|...|
T Consensus 481 A~~~~ 485 (697)
T PLN03081 481 AYAMI 485 (697)
T ss_pred HHHHH
Confidence 76654
No 72
>PLN03077 Protein ECB2; Provisional
Probab=96.93 E-value=0.058 Score=57.12 Aligned_cols=147 Identities=9% Similarity=0.064 Sum_probs=72.1
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhccCC
Q 023037 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (288)
Q Consensus 29 ~~d~~~Al~~f~~ii~~~~e~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~~~~~~ 108 (288)
.++.+.|.+.|.+.... +. .++..++..|.+.|++++++++|+++..- .+.. ....++.+|..+....
T Consensus 336 ~g~~~~A~~vf~~m~~~--d~-----~s~n~li~~~~~~g~~~~A~~lf~~M~~~---g~~P--d~~t~~~ll~a~~~~g 403 (857)
T PLN03077 336 LGSWGEAEKVFSRMETK--DA-----VSWTAMISGYEKNGLPDKALETYALMEQD---NVSP--DEITIASVLSACACLG 403 (857)
T ss_pred cCCHHHHHHHHhhCCCC--Ce-----eeHHHHHHHHHhCCCHHHHHHHHHHHHHh---CCCC--CceeHHHHHHHHhccc
Confidence 45666677776665322 21 23456777777778888877777766431 1111 1234445555444332
Q ss_pred CcchhhHHHHHHHHHHHHHHhhhhhhhHHhhhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHH
Q 023037 109 SQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIE 188 (288)
Q Consensus 109 ~~~~~~~~~~~~~~l~~i~~a~ner~~f~~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE 188 (288)
. .+...++++...+ . .-.....+..-|+..|...|++++|.++++++.+. |- -.+..-
T Consensus 404 ~--~~~a~~l~~~~~~----~-g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~-------d~--------vs~~~m 461 (857)
T PLN03077 404 D--LDVGVKLHELAER----K-GLISYVVVANALIEMYSKCKCIDKALEVFHNIPEK-------DV--------ISWTSI 461 (857)
T ss_pred h--HHHHHHHHHHHHH----h-CCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCC-------Ce--------eeHHHH
Confidence 1 2122222221111 0 01112245556777777777777777776665321 11 123333
Q ss_pred HHHHHhhcCHHHHHHHHHHHH
Q 023037 189 IQMYTETKNNKKLKQLYQKAL 209 (288)
Q Consensus 189 ~~~y~~~~n~~kak~~y~~A~ 209 (288)
+..|...++..+|..++...+
T Consensus 462 i~~~~~~g~~~eA~~lf~~m~ 482 (857)
T PLN03077 462 IAGLRLNNRCFEALIFFRQML 482 (857)
T ss_pred HHHHHHCCCHHHHHHHHHHHH
Confidence 444445555555555555554
No 73
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=96.86 E-value=0.012 Score=47.12 Aligned_cols=98 Identities=12% Similarity=-0.001 Sum_probs=78.6
Q ss_pred HhhhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCC
Q 023037 137 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP 216 (288)
Q Consensus 137 ~~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE~~~y~~~~n~~kak~~y~~A~~~a~~I~ 216 (288)
.....++..++..|+|.+|...++.+....+ ++. +++..-+..|...++++.|...|.++......-
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p-----~~~-------~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~- 84 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDP-----YNS-------RYWLGLAACCQMLKEYEEAIDAYALAAALDPDD- 84 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCC-----CcH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-
Confidence 3467899999999999999999999887721 232 667777899999999999999999988864222
Q ss_pred ChhHHHHHHhhcchhhhhhccHHHHHHHHHHHHhhh
Q 023037 217 HPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (288)
Q Consensus 217 ~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EaF~~y 252 (288)
......-|.+|...|+|+.|..+|-.+.+..
T Consensus 85 -----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 85 -----PRPYFHAAECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred -----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 2333556788999999999999999998865
No 74
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=96.84 E-value=0.057 Score=49.11 Aligned_cols=49 Identities=29% Similarity=0.458 Sum_probs=9.4
Q ss_pred CCCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 023037 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREML 81 (288)
Q Consensus 28 ~~~d~~~Al~~f~~ii~~~~e~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l 81 (288)
..++|++|++.+.+..+...+ ...+..++.++...|+++++.+++.++.
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~-----~~~l~~~l~~~~~~~~~~~~~~~l~~~~ 137 (280)
T PF13429_consen 89 QDGDPEEALKLAEKAYERDGD-----PRYLLSALQLYYRLGDYDEAEELLEKLE 137 (280)
T ss_dssp ----------------------------------H-HHHTT-HHHHHHHHHHHH
T ss_pred ccccccccccccccccccccc-----cchhhHHHHHHHHHhHHHHHHHHHHHHH
Confidence 455566666655554433211 1122334444555555555555555543
No 75
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=96.82 E-value=0.069 Score=42.62 Aligned_cols=112 Identities=13% Similarity=0.164 Sum_probs=70.3
Q ss_pred HHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhccCCCcchhhHHH
Q 023037 38 GFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLRE 117 (288)
Q Consensus 38 ~f~~ii~~~~e~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~~~~~~~~~~~~~~~ 117 (288)
.|++++..+++.. .++..++..+...|+++++.+.++.++... +.-+
T Consensus 5 ~~~~~l~~~p~~~----~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~---------------------------- 51 (135)
T TIGR02552 5 TLKDLLGLDSEQL----EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNS---------------------------- 51 (135)
T ss_pred hHHHHHcCChhhH----HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcH----------------------------
Confidence 4667777665432 446789999999999999999987776654 3211
Q ss_pred HHHHHHHHHHHhhhhhhhHHhhhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHHHHHHHhhcC
Q 023037 118 FYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKN 197 (288)
Q Consensus 118 ~~~~~l~~i~~a~ner~~f~~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE~~~y~~~~n 197 (288)
....++|.+++..|+|++|...++.+.+..+ ++ .+++...+.+|...++
T Consensus 52 -------------------~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p-----~~-------~~~~~~la~~~~~~g~ 100 (135)
T TIGR02552 52 -------------------RYWLGLAACCQMLKEYEEAIDAYALAAALDP-----DD-------PRPYFHAAECLLALGE 100 (135)
T ss_pred -------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----CC-------hHHHHHHHHHHHHcCC
Confidence 1223556666666666666666666655511 11 2455556666666666
Q ss_pred HHHHHHHHHHHHhhhc
Q 023037 198 NKKLKQLYQKALAIKS 213 (288)
Q Consensus 198 ~~kak~~y~~A~~~a~ 213 (288)
+.+|...+..+.....
T Consensus 101 ~~~A~~~~~~al~~~p 116 (135)
T TIGR02552 101 PESALKALDLAIEICG 116 (135)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 6666666666665543
No 76
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.75 E-value=0.073 Score=44.79 Aligned_cols=132 Identities=8% Similarity=-0.017 Sum_probs=92.1
Q ss_pred CCCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhccC
Q 023037 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGS 107 (288)
Q Consensus 28 ~~~d~~~Al~~f~~ii~~~~e~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~~~~~ 107 (288)
.+.++..+.+.+.++++... ..-...++..+|.++..+|++++++..+++.+... +.
T Consensus 11 ~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~-~~-------------------- 67 (168)
T CHL00033 11 IDKTFTIVADILLRILPTTS--GEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLE-ID-------------------- 67 (168)
T ss_pred cccccccchhhhhHhccCCc--hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-cc--------------------
Confidence 34456677777777775432 22257888999999999999999999998887764 21
Q ss_pred CCcchhhHHHHHHHHHHHHHHhhhhhhhHHhhhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHH
Q 023037 108 ASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAI 187 (288)
Q Consensus 108 ~~~~~~~~~~~~~~~l~~i~~a~ner~~f~~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~l 187 (288)
+. ....+..++|.+|...|++++|...++...+.-+.. .+.. ..+..++..
T Consensus 68 ~~------------------------~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~--~~~~---~~la~i~~~ 118 (168)
T CHL00033 68 PY------------------------DRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFL--PQAL---NNMAVICHY 118 (168)
T ss_pred ch------------------------hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc--HHHH---HHHHHHHHH
Confidence 00 001245788999999999999999999988772111 0111 344556666
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHhh
Q 023037 188 EIQMYTETKNNKKLKQLYQKALAI 211 (288)
Q Consensus 188 E~~~y~~~~n~~kak~~y~~A~~~ 211 (288)
-.+.+..++++..+...+.+|...
T Consensus 119 ~~~~~~~~g~~~~A~~~~~~a~~~ 142 (168)
T CHL00033 119 RGEQAIEQGDSEIAEAWFDQAAEY 142 (168)
T ss_pred hhHHHHHcccHHHHHHHHHHHHHH
Confidence 666666888988888888777665
No 77
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.73 E-value=0.016 Score=53.36 Aligned_cols=105 Identities=14% Similarity=0.126 Sum_probs=80.2
Q ss_pred HHHHHHhhccc--CCCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHH
Q 023037 17 RVLCSILEKGL--VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSE 94 (288)
Q Consensus 17 ~~~~y~~ak~~--~~~d~~~Al~~f~~ii~~~~e~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~ 94 (288)
+-..|..|-++ +.+++++|+..|+.++...|+. .....+.+.+|.+|+..|++++++..|+.++... +.-
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s-~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y-P~s------ 213 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDS-TYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY-PKS------ 213 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCC------
Confidence 45567777775 4689999999999999987642 3345788999999999999999999988876655 321
Q ss_pred HHHHHHHHHhccCCCcchhhHHHHHHHHHHHHHHhhhhhhhHHhhhhHHHHHhhhcchhHHHHHHHHHHHhcc
Q 023037 95 KCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQ 167 (288)
Q Consensus 95 k~i~~ild~~~~~~~~~~~~~~~~~~~~l~~i~~a~ner~~f~~~~kL~~lyl~~~~y~~~~~ll~elkk~~~ 167 (288)
........++|.+|.+.|++++|...++++.+.-+
T Consensus 214 --------------------------------------~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP 248 (263)
T PRK10803 214 --------------------------------------PKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYP 248 (263)
T ss_pred --------------------------------------cchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 11112344578888999999999999999887744
No 78
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.73 E-value=0.016 Score=43.20 Aligned_cols=59 Identities=15% Similarity=0.237 Sum_probs=46.6
Q ss_pred HhhhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Q 023037 137 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKA 208 (288)
Q Consensus 137 ~~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE~~~y~~~~n~~kak~~y~~A 208 (288)
..-..+|..|+..|+|.+|..+++. .+. ++. . ++++.+-++.|..+|++.+|..+|.+|
T Consensus 26 ~~~~~la~~~~~~~~y~~A~~~~~~-~~~-------~~~---~--~~~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 26 AYLYNLAQCYFQQGKYEEAIELLQK-LKL-------DPS---N--PDIHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHC-HTH-------HHC---H--HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHH-hCC-------CCC---C--HHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 4556699999999999999999988 444 332 2 566666699999999999999999875
No 79
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=96.71 E-value=0.033 Score=39.05 Aligned_cols=96 Identities=21% Similarity=0.346 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHHHHhhhhhhh
Q 023037 56 ALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLW 135 (288)
Q Consensus 56 al~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~~~~~~~~~~~~~~~~~~~~l~~i~~a~ner~~ 135 (288)
++..++.++..+|+++++..++++.+... +.-+
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~---------------------------------------------- 34 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELD-PDNA---------------------------------------------- 34 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccH----------------------------------------------
Confidence 56788999999999999988887775544 2110
Q ss_pred HHhhhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhh
Q 023037 136 FKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAI 211 (288)
Q Consensus 136 f~~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE~~~y~~~~n~~kak~~y~~A~~~ 211 (288)
.+...++.++...|+++++..+++++.+..+. +. +++..-+.++...+++.++...+..+...
T Consensus 35 -~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~-------~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 35 -DAYYNLAAAYYKLGKYEEALEDYEKALELDPD-----NA-------KAYYNLGLAYYKLGKYEEALEAYEKALEL 97 (100)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-----ch-------hHHHHHHHHHHHHHhHHHHHHHHHHHHcc
Confidence 23345677777778888888888877766321 11 56667777888888888888888777543
No 80
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=96.60 E-value=0.19 Score=48.56 Aligned_cols=59 Identities=8% Similarity=0.067 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhHHHHHHhhcchhhhhhccHHHHHHHHHHHH
Q 023037 182 LEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAF 249 (288)
Q Consensus 182 lEv~~lE~~~y~~~~n~~kak~~y~~A~~~a~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EaF 249 (288)
.+++..=.+.+...|+..+|...+.++.+ .-+||.+...--.+ ..+|.++|....-.-.
T Consensus 263 ~~~~~~~A~~l~~~g~~~~A~~~L~~~l~---~~~~~~l~~l~~~l------~~~~~~~al~~~e~~l 321 (398)
T PRK10747 263 VALQVAMAEHLIECDDHDTAQQIILDGLK---RQYDERLVLLIPRL------KTNNPEQLEKVLRQQI 321 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCHHHHHHHhhc------cCCChHHHHHHHHHHH
Confidence 47778888999999999999999999887 33466543222111 2266666655443333
No 81
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.58 E-value=0.013 Score=43.66 Aligned_cols=84 Identities=19% Similarity=0.171 Sum_probs=60.7
Q ss_pred hhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhHHHHHHhh
Q 023037 148 DMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIREC 227 (288)
Q Consensus 148 ~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE~~~y~~~~n~~kak~~y~~A~~~a~~I~~p~i~a~I~~~ 227 (288)
++|+|++|..++.++.+. ++. ..--+++..-+++|+..+++.+|-..+.+ .... |.. ..+...
T Consensus 1 ~~~~y~~Ai~~~~k~~~~-------~~~---~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-----~~~-~~~~~l 63 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLEL-------DPT---NPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-----PSN-PDIHYL 63 (84)
T ss_dssp HTT-HHHHHHHHHHHHHH-------HCG---THHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-----HCH-HHHHHH
T ss_pred CCccHHHHHHHHHHHHHH-------CCC---ChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-----CCC-HHHHHH
Confidence 578999999999999998 332 11224555679999999999999999988 2222 211 333345
Q ss_pred cchhhhhhccHHHHHHHHHHH
Q 023037 228 GGKMHMAERQWADAATDFFEA 248 (288)
Q Consensus 228 ~G~l~~~ekdy~~A~syF~Ea 248 (288)
.|..+...|+|+.|...|.++
T Consensus 64 ~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 64 LARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHhcC
Confidence 589999999999999998765
No 82
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.58 E-value=0.018 Score=56.07 Aligned_cols=177 Identities=15% Similarity=0.113 Sum_probs=131.6
Q ss_pred HHHHHHHHHhhcCCc--cchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhccCCC-
Q 023037 33 EGALAGFAEVVAMEP--EKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSAS- 109 (288)
Q Consensus 33 ~~Al~~f~~ii~~~~--e~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~~~~~~~- 109 (288)
+.|.++|++-++... ...--+-+|+-+||..|+-.|++++++..-+.-+.+.+.-..|+.--+.-.| +++..-
T Consensus 172 ~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sN----lgN~hif 247 (639)
T KOG1130|consen 172 ENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSN----LGNCHIF 247 (639)
T ss_pred HHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcc----cchhhhh
Confidence 467777777766533 1222356789999999999999999999999888888555556554444443 333211
Q ss_pred -cchhhHHHHHHHHHHHHHHhhhhhhhHHhhhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHH
Q 023037 110 -QNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIE 188 (288)
Q Consensus 110 -~~~~~~~~~~~~~l~~i~~a~ner~~f~~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE 188 (288)
.+.+...+.|.+|+...-.-++.-.-......|++.|.-.++|++|.+.-+.=.++.++. .|. ..-+-.+-.-
T Consensus 248 lg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL---~Dr---iGe~RacwSL 321 (639)
T KOG1130|consen 248 LGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQEL---EDR---IGELRACWSL 321 (639)
T ss_pred hcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHh---hhhHHHHHHH
Confidence 466788889999888777776666666777899999999999999988877777775554 555 5555666666
Q ss_pred HHHHHhhcCHHHHHHHHHHHHhhhccCCChh
Q 023037 189 IQMYTETKNNKKLKQLYQKALAIKSAIPHPR 219 (288)
Q Consensus 189 ~~~y~~~~n~~kak~~y~~A~~~a~~I~~p~ 219 (288)
+..|.++++-.||.-.....+.++-.+.+|.
T Consensus 322 gna~~alg~h~kAl~fae~hl~~s~ev~D~s 352 (639)
T KOG1130|consen 322 GNAFNALGEHRKALYFAELHLRSSLEVNDTS 352 (639)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHhCCcc
Confidence 7888888899999999999999998888854
No 83
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.53 E-value=0.29 Score=44.42 Aligned_cols=169 Identities=7% Similarity=0.049 Sum_probs=117.9
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHHHHhhh
Q 023037 52 WGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKN 131 (288)
Q Consensus 52 ~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~~~~~~~~~~~~~~~~~~~~l~~i~~a~n 131 (288)
|....++..+.-+...|++++|.+.|+++++.. |.
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y-P~-------------------------------------------- 64 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRY-PF-------------------------------------------- 64 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CC--------------------------------------------
Confidence 456667888999999999999999998887655 31
Q ss_pred hhhhHHhhhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHHHHHHH---------------hhc
Q 023037 132 ERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYT---------------ETK 196 (288)
Q Consensus 132 er~~f~~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE~~~y~---------------~~~ 196 (288)
....-...+.+|..|+..|+|++|....++..+.-++.+.. -+++..-+..+. ..+
T Consensus 65 s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~---------~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~r 135 (243)
T PRK10866 65 GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI---------DYVLYMRGLTNMALDDSALQGFFGVDRSDR 135 (243)
T ss_pred ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch---------HHHHHHHHHhhhhcchhhhhhccCCCcccc
Confidence 01111345678999999999999999999998885554322 233444443321 223
Q ss_pred CHHHHHHHHHHHHhhhccCCC----h----------hHHHHHHhhcchhhhhhccHHHHHHHHHHHHhhhhhhCChhHHH
Q 023037 197 NNKKLKQLYQKALAIKSAIPH----P----------RIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQ 262 (288)
Q Consensus 197 n~~kak~~y~~A~~~a~~I~~----p----------~i~a~I~~~~G~l~~~ekdy~~A~syF~EaF~~y~e~g~~~a~~ 262 (288)
|...++.++..-.++-+.=|. | ..+|.-.+.-|+.|+..|+|.-|..-|-+-.++|. +++..-.
T Consensus 136 D~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp--~t~~~~e 213 (243)
T PRK10866 136 DPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYP--DTQATRD 213 (243)
T ss_pred CHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCC--CCchHHH
Confidence 555566665555555443333 2 33445556678999999999999999999999996 6677778
Q ss_pred HhHHHHHHHHhcCC
Q 023037 263 CLKYLVLANMLMES 276 (288)
Q Consensus 263 ~LKY~~L~~il~~~ 276 (288)
+|-+|+-+..-.|.
T Consensus 214 al~~l~~ay~~lg~ 227 (243)
T PRK10866 214 ALPLMENAYRQLQL 227 (243)
T ss_pred HHHHHHHHHHHcCC
Confidence 88888888765543
No 84
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.52 E-value=0.23 Score=49.38 Aligned_cols=188 Identities=13% Similarity=0.093 Sum_probs=132.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHHHHh
Q 023037 54 FKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTR----NYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEA 129 (288)
Q Consensus 54 ~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~k----a~~~k~i~~ild~~~~~~~~~~~~~~~~~~~~l~~i~~a 129 (288)
-.-|.+++-+-.-.|++.++++-+..++..+ ...+. .+.+--|.-++-.++.+-+ ..+..-..|.++.+..
T Consensus 323 m~~LE~iv~c~lv~~~~~~al~~i~dm~~w~-~r~p~~~Llr~~~~~ih~LlGlys~sv~----~~enAe~hf~~a~k~t 397 (629)
T KOG2300|consen 323 MILLEHIVMCRLVRGDYVEALEEIVDMKNWC-TRFPTPLLLRAHEAQIHMLLGLYSHSVN----CYENAEFHFIEATKLT 397 (629)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-HhCCchHHHHHhHHHHHHHHhhHhhhcc----hHHHHHHHHHHHHHhh
Confidence 3455667777778999999999999999988 55554 2334445555555554443 5566666777777777
Q ss_pred hhhhhhHHhhhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Q 023037 130 KNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKAL 209 (288)
Q Consensus 130 ~ner~~f~~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE~~~y~~~~n~~kak~~y~~A~ 209 (288)
..+.+|.-+++++|..|+..|+-+...+++..+-..=..+ .... .+-.-++.+-+-..+.+|++.+||..+...+
T Consensus 398 ~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s--~ssq---~l~a~~~~v~glfaf~qn~lnEaK~~l~e~L 472 (629)
T KOG2300|consen 398 ESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNS--LSSQ---RLEASILYVYGLFAFKQNDLNEAKRFLRETL 472 (629)
T ss_pred hHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCc--chHH---HHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 7888999999999999999888766554444331110000 0111 2224566666777788899999999999999
Q ss_pred hhhccCCChhHHHHHHhhcchhhhhhccHHHHHHHHHHHHhh
Q 023037 210 AIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (288)
Q Consensus 210 ~~a~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EaF~~ 251 (288)
+++|+----|+.|.--..-|.+....||=.++..----|..-
T Consensus 473 kmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamql 514 (629)
T KOG2300|consen 473 KMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQL 514 (629)
T ss_pred hhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHH
Confidence 999987778888888888888888888877776544444433
No 85
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.44 E-value=0.15 Score=51.37 Aligned_cols=213 Identities=15% Similarity=0.147 Sum_probs=123.2
Q ss_pred HHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh----hhhhhHHHHHHHHHHHhccCC
Q 023037 33 EGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSA----VTRNYSEKCINNIMDFVSGSA 108 (288)
Q Consensus 33 ~~Al~~f~~ii~~~~e~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~----v~ka~~~k~i~~ild~~~~~~ 108 (288)
..||..+++.++.+++. -.++..|+.-|..+|.-.+|+.++..=+..- +. ++...-++..+.
T Consensus 336 ~~ai~AL~rcl~LdP~N----leaLmaLAVSytNeg~q~~Al~~L~~Wi~~~-p~y~~l~~a~~~~~~~~~--------- 401 (579)
T KOG1125|consen 336 QNAISALRRCLELDPTN----LEALMALAVSYTNEGLQNQALKMLDKWIRNK-PKYVHLVSAGENEDFENT--------- 401 (579)
T ss_pred HHHHHHHHHHHhcCCcc----HHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-ccchhccccCccccccCC---------
Confidence 35666666666665432 2456667777777776666666555443222 11 000000000000
Q ss_pred CcchhhHHHHHHHHHHHHHHhhhhh--hhHHhhhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHH
Q 023037 109 SQNFSLLREFYQTTLKALEEAKNER--LWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYA 186 (288)
Q Consensus 109 ~~~~~~~~~~~~~~l~~i~~a~ner--~~f~~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~ 186 (288)
+..-....+.++..-.++-+.... .--.+++-||-||.-.|+|+++..+++-....-+ .|- .+ +-
T Consensus 402 -~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~P-----nd~---~l----WN 468 (579)
T KOG1125|consen 402 -KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKP-----NDY---LL----WN 468 (579)
T ss_pred -cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCC-----chH---HH----HH
Confidence 000112233333333444444333 4558999999999999999999999999988722 232 11 11
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhHHHHHHhhcchhhhhhccHHHHHHHHHHHHhhhhh----hCC----h
Q 023037 187 IEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDE----AGN----Q 258 (288)
Q Consensus 187 lE~~~y~~~~n~~kak~~y~~A~~~a~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EaF~~y~e----~g~----~ 258 (288)
=-+-.....+....|..+|++|+.+.-.--- .|---|+-+|..|.|+.|..+|.+|..-=.. .+. .
T Consensus 469 RLGAtLAN~~~s~EAIsAY~rALqLqP~yVR------~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se 542 (579)
T KOG1125|consen 469 RLGATLANGNRSEEAISAYNRALQLQPGYVR------VRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASE 542 (579)
T ss_pred HhhHHhcCCcccHHHHHHHHHHHhcCCCeee------eehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchH
Confidence 1122223334588899999999988764222 2334477789999999999999999864433 222 2
Q ss_pred hHHHHhHHHHHHHHhcCCCCCCC
Q 023037 259 RRIQCLKYLVLANMLMESEVNPF 281 (288)
Q Consensus 259 ~a~~~LKY~~L~~il~~~~~dpF 281 (288)
...+.|| ++-++++.++..+
T Consensus 543 ~iw~tLR---~als~~~~~D~l~ 562 (579)
T KOG1125|consen 543 NIWQTLR---LALSAMNRSDLLQ 562 (579)
T ss_pred HHHHHHH---HHHHHcCCchHHH
Confidence 4667777 5556666665433
No 86
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=96.43 E-value=0.27 Score=50.34 Aligned_cols=142 Identities=13% Similarity=0.162 Sum_probs=104.5
Q ss_pred hhhHHHHHHHHHHHHHHhh-----hhhhhHHhhhhHHHHHh-hhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHH
Q 023037 112 FSLLREFYQTTLKALEEAK-----NERLWFKTNLKLCKIWF-DMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVY 185 (288)
Q Consensus 112 ~~~~~~~~~~~l~~i~~a~-----ner~~f~~~~kL~~lyl-~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~ 185 (288)
.+..-+.+.+++.|++-.. ..+.-+++.++||.+|+ ++.+++.|...+.+-..+|+..+ -+ .+-.+..
T Consensus 30 l~~Y~kLI~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~-~~-----d~k~~~~ 103 (608)
T PF10345_consen 30 LKQYYKLIATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHR-LT-----DLKFRCQ 103 (608)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-hH-----HHHHHHH
Confidence 4455666677777777554 33445589999999999 99999999999999988987732 22 2235555
Q ss_pred HHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhHHHHHHhhcchhhhhhccHHHHHHHHHHHHhhhhhhCChhH
Q 023037 186 AIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRR 260 (288)
Q Consensus 186 ~lE~~~y~~~~n~~kak~~y~~A~~~a~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EaF~~y~e~g~~~a 260 (288)
.+-+++|...+-.. |+..+.++.+....-.|....=..+.+.=.+++..+|+..|...+-......+..|+|..
T Consensus 104 ~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~ 177 (608)
T PF10345_consen 104 FLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAV 177 (608)
T ss_pred HHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHH
Confidence 56699998888777 999999998888886664333444444333344348999999999999998888888744
No 87
>PLN03077 Protein ECB2; Provisional
Probab=96.42 E-value=0.23 Score=52.57 Aligned_cols=96 Identities=8% Similarity=0.004 Sum_probs=63.9
Q ss_pred HhhhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCC
Q 023037 137 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP 216 (288)
Q Consensus 137 ~~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE~~~y~~~~n~~kak~~y~~A~~~a~~I~ 216 (288)
.+..-++..|...|+.++|..++++..+.=-.| |.. .|..-+..|.+.|++.++..++........-.|
T Consensus 555 ~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~P---d~~--------T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P 623 (857)
T PLN03077 555 VSWNILLTGYVAHGKGSMAVELFNRMVESGVNP---DEV--------TFISLLCACSRSGMVTQGLEYFHSMEEKYSITP 623 (857)
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---Ccc--------cHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCC
Confidence 445667888888888888888888887652222 222 244445678888888888888887764443333
Q ss_pred ChhHHHHHHhhcchhhhhhccHHHHHHHHHH
Q 023037 217 HPRIMGIIRECGGKMHMAERQWADAATDFFE 247 (288)
Q Consensus 217 ~p~i~a~I~~~~G~l~~~ekdy~~A~syF~E 247 (288)
.+ ....|-..++...|++++|...|-+
T Consensus 624 ~~----~~y~~lv~~l~r~G~~~eA~~~~~~ 650 (857)
T PLN03077 624 NL----KHYACVVDLLGRAGKLTEAYNFINK 650 (857)
T ss_pred ch----HHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 32 3345555667788888888866543
No 88
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.41 E-value=0.014 Score=41.08 Aligned_cols=53 Identities=23% Similarity=0.417 Sum_probs=45.2
Q ss_pred CCCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 023037 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (288)
Q Consensus 28 ~~~d~~~Al~~f~~ii~~~~e~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~ 84 (288)
..+++++|++.|++++...++ ...+...+|.++..+|++++++.+|++.+...
T Consensus 9 ~~g~~~~A~~~~~~~l~~~P~----~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 9 QQGDYDEAIAAFEQALKQDPD----NPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HCTHHHHHHHHHHHHHCCSTT----HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HcCCHHHHHHHHHHHHHHCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 357899999999999998764 35677899999999999999999999988764
No 89
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.41 E-value=0.016 Score=40.76 Aligned_cols=61 Identities=15% Similarity=0.293 Sum_probs=51.8
Q ss_pred hhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 023037 140 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (288)
Q Consensus 140 ~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE~~~y~~~~n~~kak~~y~~A~~~a 212 (288)
+.+|..+++.|+|++|...++++.+.-+ ++ .+++..-+.++..+|++.+|...|..+....
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P-----~~-------~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDP-----DN-------PEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCST-----TH-------HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCC-----CC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 3589999999999999999999988821 23 4899999999999999999999999997654
No 90
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=96.41 E-value=0.61 Score=47.09 Aligned_cols=212 Identities=11% Similarity=0.193 Sum_probs=132.4
Q ss_pred CCCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHHHHhh-----------hh----h
Q 023037 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYY--RLGKYKEMMDAYREMLTYIKSA-----------VT----R 90 (288)
Q Consensus 28 ~~~d~~~Al~~f~~ii~~~~e~~~~~~kal~~l~~l~~--~~g~~~~~l~~~~~~l~~~~~~-----------v~----k 90 (288)
+-++.++|...|...|+.+||...+ ...|....-+.. ...+.+...++|.++.... |. .+ +
T Consensus 50 kLg~~~eA~~~y~~Li~rNPdn~~Y-y~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~y-p~s~~~~rl~L~~~~g~~F~ 127 (517)
T PF12569_consen 50 KLGRKEEAEKIYRELIDRNPDNYDY-YRGLEEALGLQLQLSDEDVEKLLELYDELAEKY-PRSDAPRRLPLDFLEGDEFK 127 (517)
T ss_pred HcCCHHHHHHHHHHHHHHCCCcHHH-HHHHHHHHhhhcccccccHHHHHHHHHHHHHhC-ccccchhHhhcccCCHHHHH
Confidence 4678899999999999999876553 333333322222 2235667777777765444 21 01 1
Q ss_pred hhHHHHHHHHHHHhccCCC---------cchhhHHHHHHHHHHHHHHhhh--------------hhhhHHhhhhHHHHHh
Q 023037 91 NYSEKCINNIMDFVSGSAS---------QNFSLLREFYQTTLKALEEAKN--------------ERLWFKTNLKLCKIWF 147 (288)
Q Consensus 91 a~~~k~i~~ild~~~~~~~---------~~~~~~~~~~~~~l~~i~~a~n--------------er~~f~~~~kL~~lyl 147 (288)
..+..-|+..|.. .+|. .+.+....+-++..+++..... ..-.+-+..-||..|-
T Consensus 128 ~~~~~yl~~~l~K--gvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd 205 (517)
T PF12569_consen 128 ERLDEYLRPQLRK--GVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYD 205 (517)
T ss_pred HHHHHHHHHHHhc--CCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHH
Confidence 1222222221110 1232 2222333333444444432110 1111136678899999
Q ss_pred hhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhcc-------------
Q 023037 148 DMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSA------------- 214 (288)
Q Consensus 148 ~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE~~~y~~~~n~~kak~~y~~A~~~a~~------------- 214 (288)
..|+|++|.+.|.+.-.. + .-++|.|..-+++|.+.|++.+|-..+..||....+
T Consensus 206 ~~g~~~~Al~~Id~aI~h-------t-----Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~L 273 (517)
T PF12569_consen 206 YLGDYEKALEYIDKAIEH-------T-----PTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLL 273 (517)
T ss_pred HhCCHHHHHHHHHHHHhc-------C-----CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHH
Confidence 999999999999988777 2 346899999999999999999999999888765321
Q ss_pred ----------------------CCC-hhHHHHHH-hhcchhhhhhccHHHHHHHHHHHHhhhhhh
Q 023037 215 ----------------------IPH-PRIMGIIR-ECGGKMHMAERQWADAATDFFEAFKNYDEA 255 (288)
Q Consensus 215 ----------------------I~~-p~i~a~I~-~~~G~l~~~ekdy~~A~syF~EaF~~y~e~ 255 (288)
... -.+|+.-- .-.|.-|...|+|..|...|..-.+.|++.
T Consensus 274 Ra~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~ 338 (517)
T PF12569_consen 274 RAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDF 338 (517)
T ss_pred HCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 111 11222221 335888999999999999999999998874
No 91
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.38 E-value=0.27 Score=47.47 Aligned_cols=185 Identities=12% Similarity=0.096 Sum_probs=125.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhccCCC--cchhhHHHHHHHHHHHHHHhh--
Q 023037 55 KALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSAS--QNFSLLREFYQTTLKALEEAK-- 130 (288)
Q Consensus 55 kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~~~~~~~--~~~~~~~~~~~~~l~~i~~a~-- 130 (288)
+.-.+-|.-+....++++++...++.+.-+...++|=.+ ++-.+. .+....++.+..+...|+-+.
T Consensus 7 k~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~----------lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~ 76 (518)
T KOG1941|consen 7 KKQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRV----------LGCLVTAHSEMGRYKEMLKFAVSQIDTAREL 76 (518)
T ss_pred HHHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHH----------hccchhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 333445555667788888888888777776333333111 222211 122234444444444444322
Q ss_pred -hhhhhHHhhhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Q 023037 131 -NERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKAL 209 (288)
Q Consensus 131 -ner~~f~~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE~~~y~~~~n~~kak~~y~~A~ 209 (288)
+.-+-....+||++-+-..-+|.+...+ .++|..-||++.. ..=-.+++..+..+..++-+.|+..++.+|+
T Consensus 77 ~ds~~~~ea~lnlar~~e~l~~f~kt~~y----~k~~l~lpgt~~~---~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~ 149 (518)
T KOG1941|consen 77 EDSDFLLEAYLNLARSNEKLCEFHKTISY----CKTCLGLPGTRAG---QLGGQVSLSMGNAHLGLSVFQKALESFEKAL 149 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHH----HHHHhcCCCCCcc---cccchhhhhHHHHhhhHHHHHHHHHHHHHHH
Confidence 2333345667777777776777776544 3455555665442 1123677778999999999999999999999
Q ss_pred hhhccCCChhHHHHHHhhcchhhhhhccHHHHHHHHHHHHhhhhhhC
Q 023037 210 AIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAG 256 (288)
Q Consensus 210 ~~a~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EaF~~y~e~g 256 (288)
++++.+.+|.+--+|-.--|-++..-+||++|..+.-.|.+.-+..|
T Consensus 150 ~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~ 196 (518)
T KOG1941|consen 150 RYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYG 196 (518)
T ss_pred HHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcC
Confidence 99999999999999999999999999999999999999988777644
No 92
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.37 E-value=0.021 Score=40.50 Aligned_cols=63 Identities=21% Similarity=0.241 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhHHHHHHhhcchhhhhhc-cHHHHHHHHHHHHh
Q 023037 182 LEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAER-QWADAATDFFEAFK 250 (288)
Q Consensus 182 lEv~~lE~~~y~~~~n~~kak~~y~~A~~~a~~I~~p~i~a~I~~~~G~l~~~ek-dy~~A~syF~EaF~ 250 (288)
.+++...+.++...+++.+|...|++|+... |. .+.+-..-|.+|+..+ +|+.|..+|-.|.+
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-----p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-----PN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-----TT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 3788999999999999999999999999884 43 2345566688899998 89999999998876
No 93
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.34 E-value=0.25 Score=48.83 Aligned_cols=197 Identities=13% Similarity=0.207 Sum_probs=134.0
Q ss_pred HHHHHhhcccCCCCHHHHHHHHHHhhcCCcc-chhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHH
Q 023037 18 VLCSILEKGLVETDPEGALAGFAEVVAMEPE-KAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKC 96 (288)
Q Consensus 18 ~~~y~~ak~~~~~d~~~Al~~f~~ii~~~~e-~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~ 96 (288)
|--||..+ .+-++|+..|+..+..++. ..-| .-+|.=|...++...|.+.|++.+... |.=-|+ ==+
T Consensus 336 IaNYYSlr----~eHEKAv~YFkRALkLNp~~~~aW-----TLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRA--WYG 403 (559)
T KOG1155|consen 336 IANYYSLR----SEHEKAVMYFKRALKLNPKYLSAW-----TLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRA--WYG 403 (559)
T ss_pred ehhHHHHH----HhHHHHHHHHHHHHhcCcchhHHH-----HHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHH--Hhh
Confidence 45678776 5669999999999999874 4556 468899999999999999999998877 431111 011
Q ss_pred HHHHHHHhccCCCcchhhH-HHHHHHHHHHHHHhhhhhhhHHhhhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccc
Q 023037 97 INNIMDFVSGSASQNFSLL-REFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQ 175 (288)
Q Consensus 97 i~~ild~~~~~~~~~~~~~-~~~~~~~l~~i~~a~ner~~f~~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk 175 (288)
+-+..+.+ ++.+. --++..+.++ ..++.|.| .-||..|-..++.++|.++.+..-.. .|-
T Consensus 404 LGQaYeim------~Mh~YaLyYfqkA~~~--kPnDsRlw----~aLG~CY~kl~~~~eAiKCykrai~~-------~dt 464 (559)
T KOG1155|consen 404 LGQAYEIM------KMHFYALYYFQKALEL--KPNDSRLW----VALGECYEKLNRLEEAIKCYKRAILL-------GDT 464 (559)
T ss_pred hhHHHHHh------cchHHHHHHHHHHHhc--CCCchHHH----HHHHHHHHHhccHHHHHHHHHHHHhc-------ccc
Confidence 22211111 11122 2222333332 12245666 45789999999999999999999888 443
Q ss_pred cccchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhc--cCCChhHHHHHHhhcchhhhhhccHHHHHHHHHHHHhh
Q 023037 176 KKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKS--AIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (288)
Q Consensus 176 ~~~~~llEv~~lE~~~y~~~~n~~kak~~y~~A~~~a~--~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EaF~~ 251 (288)
.. ..+.--.++|-.++++.+|.+.|.+...+.. ++-.|.+.-.+ .....-+..-+||+.|..|.-....+
T Consensus 465 ---e~--~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~-~fLA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 465 ---EG--SALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKAR-LFLAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred ---ch--HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHH-HHHHHHHHhhcchHHHHHHHHHHhcC
Confidence 11 3455568999999999999999999998654 34445333222 23455566889999999998888776
No 94
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.30 E-value=0.1 Score=46.03 Aligned_cols=105 Identities=15% Similarity=0.162 Sum_probs=76.4
Q ss_pred hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHHHHh
Q 023037 50 AEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEA 129 (288)
Q Consensus 50 ~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~~~~~~~~~~~~~~~~~~~~l~~i~~a 129 (288)
+....-+..++++.++..|+++++..-++..+...+
T Consensus 85 t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~-------------------------------------------- 120 (207)
T COG2976 85 TIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTK-------------------------------------------- 120 (207)
T ss_pred cHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccch--------------------------------------------
Confidence 344555666777777777777777776666554431
Q ss_pred hhhhhhHHhhhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Q 023037 130 KNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKAL 209 (288)
Q Consensus 130 ~ner~~f~~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE~~~y~~~~n~~kak~~y~~A~ 209 (288)
++-+-.-+.+||+++.+++|+++++..+|.-++.. +.---+--+-+.++...|+-..||.+|.+|+
T Consensus 121 -De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~-------------~w~~~~~elrGDill~kg~k~~Ar~ay~kAl 186 (207)
T COG2976 121 -DENLKALAALRLARVQLQQKKADAALKTLDTIKEE-------------SWAAIVAELRGDILLAKGDKQEARAAYEKAL 186 (207)
T ss_pred -hHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccc-------------cHHHHHHHHhhhHHHHcCchHHHHHHHHHHH
Confidence 22233346789999999999999998887766332 4444455667889999999999999999999
Q ss_pred hhh
Q 023037 210 AIK 212 (288)
Q Consensus 210 ~~a 212 (288)
..-
T Consensus 187 ~~~ 189 (207)
T COG2976 187 ESD 189 (207)
T ss_pred Hcc
Confidence 875
No 95
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=96.30 E-value=0.12 Score=54.02 Aligned_cols=176 Identities=10% Similarity=0.010 Sum_probs=120.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHHHHhhhhh
Q 023037 54 FKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNER 133 (288)
Q Consensus 54 ~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~~~~~~~~~~~~~~~~~~~~l~~i~~a~ner 133 (288)
..++..|+.+..+.|+++++..++..++.+. |....+...-+.. |-... ..++-...+...++-. -
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~--L~~~~--------~~eeA~~~~~~~l~~~---p 151 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRG--VKRQQ--------GIEAGRAEIELYFSGG---S 151 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHH--HHHhc--------cHHHHHHHHHHHhhcC---C
Confidence 6789999999999999999999999999999 8765544433221 11111 2233333333333322 2
Q ss_pred hhHHhhhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhc
Q 023037 134 LWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKS 213 (288)
Q Consensus 134 ~~f~~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE~~~y~~~~n~~kak~~y~~A~~~a~ 213 (288)
-.....+.+|..+-+.|+|++|..+++++.. +.+ |+. +.+..-+..+..+|....|..+|.+|.+...
T Consensus 152 ~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~--~~p---~~~-------~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~ 219 (694)
T PRK15179 152 SSAREILLEAKSWDEIGQSEQADACFERLSR--QHP---EFE-------NGYVGWAQSLTRRGALWRARDVLQAGLDAIG 219 (694)
T ss_pred CCHHHHHHHHHHHHHhcchHHHHHHHHHHHh--cCC---CcH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC
Confidence 2246678999999999999999999999988 444 454 6677778888999999999999999987765
Q ss_pred cCCC--hhHHHHHHhhcchhhhhhccHHHHHHHHHHHHhhhhh-hCChhHHHHhHHHHHH
Q 023037 214 AIPH--PRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDE-AGNQRRIQCLKYLVLA 270 (288)
Q Consensus 214 ~I~~--p~i~a~I~~~~G~l~~~ekdy~~A~syF~EaF~~y~e-~g~~~a~~~LKY~~L~ 270 (288)
.=.- -+..+.| .+--.|++-|+.=-+ .|-+-+|-++|-|+|-
T Consensus 220 ~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (694)
T PRK15179 220 DGARKLTRRLVDL---------------NADLAALRRLGVEGDGRDVPVSILVLEKMLQE 264 (694)
T ss_pred cchHHHHHHHHHH---------------HHHHHHHHHcCcccccCCCceeeeeHHHHHHH
Confidence 3111 1222222 122346666665433 5668889999988873
No 96
>PRK14574 hmsH outer membrane protein; Provisional
Probab=96.28 E-value=0.24 Score=52.62 Aligned_cols=164 Identities=8% Similarity=0.003 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHHHHhhhhhhh
Q 023037 56 ALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLW 135 (288)
Q Consensus 56 al~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~~~~~~~~~~~~~~~~~~~~l~~i~~a~ner~~ 135 (288)
.-+.-+.+.+++|+++++++.+++.+..- +.-+.+ +..++-..+.. + ..++....|.+++ ..+..+
T Consensus 36 ~~y~~aii~~r~Gd~~~Al~~L~qaL~~~-P~~~~a-----v~dll~l~~~~-G----~~~~A~~~~eka~---~p~n~~ 101 (822)
T PRK14574 36 TQYDSLIIRARAGDTAPVLDYLQEESKAG-PLQSGQ-----VDDWLQIAGWA-G----RDQEVIDVYERYQ---SSMNIS 101 (822)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhhC-ccchhh-----HHHHHHHHHHc-C----CcHHHHHHHHHhc---cCCCCC
Confidence 44566778899999999999999998776 442111 11222223322 1 2223333333433 123455
Q ss_pred HHhhhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccC
Q 023037 136 FKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAI 215 (288)
Q Consensus 136 f~~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE~~~y~~~~n~~kak~~y~~A~~~a~~I 215 (288)
.....-+|.+|...|+|++|.++++++.+.-+ ++. +++.....+|...++..+|...+.++.......
T Consensus 102 ~~~llalA~ly~~~gdyd~Aiely~kaL~~dP-----~n~-------~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~ 169 (822)
T PRK14574 102 SRGLASAARAYRNEKRWDQALALWQSSLKKDP-----TNP-------DLISGMIMTQADAGRGGVVLKQATELAERDPTV 169 (822)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-----CCH-------HHHHHHHHHHhhcCCHHHHHHHHHHhcccCcch
Confidence 55556668899999999999999999988822 222 444455889999999999999999887665542
Q ss_pred CChhHHHHHHhhcchhhhhhccHHHHHHHHHHHHhhh
Q 023037 216 PHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (288)
Q Consensus 216 ~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EaF~~y 252 (288)
..- ++.+.+. ...+++..|...+-++++.+
T Consensus 170 ~~~--l~layL~-----~~~~~~~~AL~~~ekll~~~ 199 (822)
T PRK14574 170 QNY--MTLSYLN-----RATDRNYDALQASSEAVRLA 199 (822)
T ss_pred HHH--HHHHHHH-----HhcchHHHHHHHHHHHHHhC
Confidence 221 3332222 22444544888888887754
No 97
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.23 E-value=0.029 Score=39.74 Aligned_cols=63 Identities=17% Similarity=0.270 Sum_probs=54.9
Q ss_pred hhhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHHHHHHHhhc-CHHHHHHHHHHHHhhh
Q 023037 138 TNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETK-NNKKLKQLYQKALAIK 212 (288)
Q Consensus 138 ~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE~~~y~~~~-n~~kak~~y~~A~~~a 212 (288)
+...+|..++..|+|.+|...+.+..+..+ ++ .+++..-+.+|..++ ++.+|...+.+|+++.
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p-----~~-------~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELDP-----NN-------AEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD 68 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHST-----TH-------HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----CC-------HHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence 456899999999999999999999999932 22 379999999999999 7999999999998763
No 98
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.19 E-value=0.67 Score=46.27 Aligned_cols=92 Identities=17% Similarity=0.265 Sum_probs=72.7
Q ss_pred chhhHHHHHHHHHHHHHHhhhhhhhH-HhhhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHHH
Q 023037 111 NFSLLREFYQTTLKALEEAKNERLWF-KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEI 189 (288)
Q Consensus 111 ~~~~~~~~~~~~l~~i~~a~ner~~f-~~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE~ 189 (288)
.+.++.+.|+-+..=++.+..=+=-+ --.+.||-+.+.+++++++....++.++..+.. .|||.+-.
T Consensus 402 Qm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~------------~Evy~~fA 469 (606)
T KOG0547|consen 402 QMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNC------------PEVYNLFA 469 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC------------chHHHHHH
Confidence 34455666666666666554222222 457789999999999999999999999997654 39999999
Q ss_pred HHHHhhcCHHHHHHHHHHHHhhhcc
Q 023037 190 QMYTETKNNKKLKQLYQKALAIKSA 214 (288)
Q Consensus 190 ~~y~~~~n~~kak~~y~~A~~~a~~ 214 (288)
++.+.++++.+|-.-|..|..+...
T Consensus 470 eiLtDqqqFd~A~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 470 EILTDQQQFDKAVKQYDKAIELEPR 494 (606)
T ss_pred HHHhhHHhHHHHHHHHHHHHhhccc
Confidence 9999999999999999999988876
No 99
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.16 E-value=0.13 Score=43.47 Aligned_cols=109 Identities=13% Similarity=0.104 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHHHHhhhh
Q 023037 53 GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE 132 (288)
Q Consensus 53 ~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~~~~~~~~~~~~~~~~~~~~l~~i~~a~ne 132 (288)
...++..+|.++...|++++++.++++.+..- +.. + +
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~-------------------~-----------------------~ 70 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLE-EDP-------------------N-----------------------D 70 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh-hcc-------------------c-----------------------h
Confidence 45688999999999999999999999876643 110 0 0
Q ss_pred hhhHHhhhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhh
Q 023037 133 RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAI 211 (288)
Q Consensus 133 r~~f~~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE~~~y~~~~n~~kak~~y~~A~~~ 211 (288)
...+..++|.++...|+|+++...+++..+..+ ++..--..+..++...++...+.+++.+|...|..|+.+
T Consensus 71 --~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~ 142 (172)
T PRK02603 71 --RSYILYNMGIIYASNGEHDKALEYYHQALELNP-----KQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEY 142 (172)
T ss_pred --HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-----ccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHH
Confidence 012456889999999999999999998888722 111001223344444444445555666666666555544
No 100
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.11 E-value=0.17 Score=51.53 Aligned_cols=193 Identities=16% Similarity=0.194 Sum_probs=112.0
Q ss_pred CCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-----------------Hhhhhhhh
Q 023037 30 TDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYI-----------------KSAVTRNY 92 (288)
Q Consensus 30 ~d~~~Al~~f~~ii~~~~e~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~-----------------~~~v~ka~ 92 (288)
.+-.+|+..|+++...-.+ ..| .+-|+|+.|+.+++|+++..+++.++..- +..+.=.+
T Consensus 333 y~~~~A~~~~~klp~h~~n-t~w---vl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~ 408 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSHHYN-TGW---VLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSY 408 (638)
T ss_pred HHHHHHHHHHHhhHHhcCC-chH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHH
Confidence 3457899999984333223 348 46899999999999999998887765432 11222222
Q ss_pred HHHHHHHHHHHhccCCC-----cchhhHHHHHHHHHHHHHHhhh--h----------------------hhhH-------
Q 023037 93 SEKCINNIMDFVSGSAS-----QNFSLLREFYQTTLKALEEAKN--E----------------------RLWF------- 136 (288)
Q Consensus 93 ~~k~i~~ild~~~~~~~-----~~~~~~~~~~~~~l~~i~~a~n--e----------------------r~~f------- 136 (288)
.++-+ +|.-..+|+ +|-=.+++.++.++++++.+.. + ...|
T Consensus 409 Laq~L---i~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~ 485 (638)
T KOG1126|consen 409 LAQDL---IDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD 485 (638)
T ss_pred HHHHH---HhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC
Confidence 22221 221212232 3333456666777777765431 1 1111
Q ss_pred ----HhhhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 023037 137 ----KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (288)
Q Consensus 137 ----~~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE~~~y~~~~n~~kak~~y~~A~~~a 212 (288)
+.-.-||.+|+.+++|+.|.--++....+ .-. +..+=+| -+.+++.+|...+|.+.|.+|.++.
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~I-------NP~---nsvi~~~--~g~~~~~~k~~d~AL~~~~~A~~ld 553 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEI-------NPS---NSVILCH--IGRIQHQLKRKDKALQLYEKAIHLD 553 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhcC-------Ccc---chhHHhh--hhHHHHHhhhhhHHHHHHHHHHhcC
Confidence 22335666777777777776666666555 211 2222222 3667777777777777777777766
Q ss_pred ccCCChhHHHHHHhhcchhhhhhccHHHHHHHHHH
Q 023037 213 SAIPHPRIMGIIRECGGKMHMAERQWADAATDFFE 247 (288)
Q Consensus 213 ~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~E 247 (288)
-.=++|+. .-|.+....++|..|...|-|
T Consensus 554 ~kn~l~~~------~~~~il~~~~~~~eal~~LEe 582 (638)
T KOG1126|consen 554 PKNPLCKY------HRASILFSLGRYVEALQELEE 582 (638)
T ss_pred CCCchhHH------HHHHHHHhhcchHHHHHHHHH
Confidence 66555553 345666677777777776544
No 101
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.07 E-value=0.013 Score=36.97 Aligned_cols=29 Identities=24% Similarity=0.544 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 023037 56 ALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (288)
Q Consensus 56 al~~l~~l~~~~g~~~~~l~~~~~~l~~~ 84 (288)
|+.+||.+|.++|++++|+++|++.+.+-
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 67899999999999999999999988765
No 102
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.05 E-value=0.057 Score=48.85 Aligned_cols=117 Identities=20% Similarity=0.237 Sum_probs=90.5
Q ss_pred hHHhhhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhcc
Q 023037 135 WFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSA 214 (288)
Q Consensus 135 ~f~~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE~~~y~~~~n~~kak~~y~~A~~~a~~ 214 (288)
-.++.+-||.-|++.|++..|..-+++..+. |-+ . ...|+.-.-+|..+|.+..|.+.|++|++++..
T Consensus 34 aa~arlqLal~YL~~gd~~~A~~nlekAL~~-------DPs---~--~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~ 101 (250)
T COG3063 34 AAKARLQLALGYLQQGDYAQAKKNLEKALEH-------DPS---Y--YLAHLVRAHYYQKLGENDLADESYRKALSLAPN 101 (250)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-------Ccc---c--HHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC
Confidence 3377788999999999999999999999988 332 2 256888889999999999999999999987654
Q ss_pred CCChhHHHHHHhhcchhhhhhccHHHHHHHHHHHHhhhhhhCChhHHHHhHHHHHHHH
Q 023037 215 IPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLANM 272 (288)
Q Consensus 215 I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EaF~~y~e~g~~~a~~~LKY~~L~~i 272 (288)
.|.|-.-=|-..|..|.|++|..+|-+|...= .-+..-.++--+.+|.+
T Consensus 102 ------~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P---~Y~~~s~t~eN~G~Cal 150 (250)
T COG3063 102 ------NGDVLNNYGAFLCAQGRPEEAMQQFERALADP---AYGEPSDTLENLGLCAL 150 (250)
T ss_pred ------ccchhhhhhHHHHhCCChHHHHHHHHHHHhCC---CCCCcchhhhhhHHHHh
Confidence 45555566777788899999999999997521 11233444556677766
No 103
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.04 E-value=0.16 Score=48.61 Aligned_cols=114 Identities=11% Similarity=0.151 Sum_probs=80.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHHHHhhhhhhhH
Q 023037 57 LKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWF 136 (288)
Q Consensus 57 l~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~~~~~~~~~~~~~~~~~~~~l~~i~~a~ner~~f 136 (288)
+...|.-.+..|++++++++|++.+..- +.- .
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~-----------------------------------------------~ 36 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLD-PNN-----------------------------------------------A 36 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCC-----------------------------------------------H
Confidence 4556777788888888888888776654 220 1
Q ss_pred HhhhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCC
Q 023037 137 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP 216 (288)
Q Consensus 137 ~~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE~~~y~~~~n~~kak~~y~~A~~~a~~I~ 216 (288)
.....+|.+|+..|+|++|...++++.++.+ ++ .+.|..-+.+|..+|++..|...|.+|+.+...
T Consensus 37 ~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P-----~~-------~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~-- 102 (356)
T PLN03088 37 ELYADRAQANIKLGNFTEAVADANKAIELDP-----SL-------AKAYLRKGTACMKLEEYQTAKAALEKGASLAPG-- 102 (356)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-----CC-------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC--
Confidence 1335677888888888888888888877721 11 256777788888888888888888888876632
Q ss_pred ChhHHHHHHhhcchhh
Q 023037 217 HPRIMGIIRECGGKMH 232 (288)
Q Consensus 217 ~p~i~a~I~~~~G~l~ 232 (288)
+|.+.-.+..|.+.+.
T Consensus 103 ~~~~~~~l~~~~~kl~ 118 (356)
T PLN03088 103 DSRFTKLIKECDEKIA 118 (356)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 3666666666666664
No 104
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.03 E-value=0.0098 Score=42.07 Aligned_cols=53 Identities=19% Similarity=0.300 Sum_probs=44.2
Q ss_pred CCCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 023037 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (288)
Q Consensus 28 ~~~d~~~Al~~f~~ii~~~~e~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~ 84 (288)
..+++++|++.|++++..+|+..+ +...++.+|.+.|+++++.+++.+++...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~----~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPE----ARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHH----HHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred hccCHHHHHHHHHHHHHHCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 468899999999999998775443 44589999999999999999999887766
No 105
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.01 E-value=0.79 Score=45.91 Aligned_cols=155 Identities=18% Similarity=0.225 Sum_probs=105.1
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--hhh-hhhHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHHHH
Q 023037 52 WGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKS--AVT-RNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEE 128 (288)
Q Consensus 52 ~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~--~v~-ka~~~k~i~~ild~~~~~~~~~~~~~~~~~~~~l~~i~~ 128 (288)
...+++-.+|..|.++++++.++.+|++.++-.+. ..+ ....++.++- -+...-+ .
T Consensus 296 lIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~-~e~~a~~-------------------~- 354 (539)
T KOG0548|consen 296 LIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKE-AERKAYI-------------------N- 354 (539)
T ss_pred HHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHH-HHHHHhh-------------------C-
Confidence 34567777888899999999999999887665422 111 1111111111 0000000 0
Q ss_pred hhhhhhhHHhhhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Q 023037 129 AKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKA 208 (288)
Q Consensus 129 a~ner~~f~~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE~~~y~~~~n~~kak~~y~~A 208 (288)
.+. ..-.-.-|+-++..|+|..|..-+.+.-+. .| +|. -.|..-.-.|.++++++.+..-..++
T Consensus 355 --pe~--A~e~r~kGne~Fk~gdy~~Av~~YteAIkr--~P---~Da-------~lYsNRAac~~kL~~~~~aL~Da~~~ 418 (539)
T KOG0548|consen 355 --PEK--AEEEREKGNEAFKKGDYPEAVKHYTEAIKR--DP---EDA-------RLYSNRAACYLKLGEYPEALKDAKKC 418 (539)
T ss_pred --hhH--HHHHHHHHHHHHhccCHHHHHHHHHHHHhc--CC---chh-------HHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 000 000111288999999999988777775444 23 554 46888888999999999999888887
Q ss_pred HhhhccCCC-hhHHHHHHhhcchhhhhhccHHHHHHHHHHHHh
Q 023037 209 LAIKSAIPH-PRIMGIIRECGGKMHMAERQWADAATDFFEAFK 250 (288)
Q Consensus 209 ~~~a~~I~~-p~i~a~I~~~~G~l~~~ekdy~~A~syF~EaF~ 250 (288)
... + +.+-|-+|- |..+...++|.+|..-|.|+.+
T Consensus 419 ieL-----~p~~~kgy~RK--g~al~~mk~ydkAleay~eale 454 (539)
T KOG0548|consen 419 IEL-----DPNFIKAYLRK--GAALRAMKEYDKALEAYQEALE 454 (539)
T ss_pred Hhc-----CchHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHh
Confidence 776 6 688999998 9999999999999999988876
No 106
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=96.01 E-value=0.12 Score=44.78 Aligned_cols=109 Identities=15% Similarity=0.216 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHHHHhhhh
Q 023037 53 GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE 132 (288)
Q Consensus 53 ~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~~~~~~~~~~~~~~~~~~~~l~~i~~a~ne 132 (288)
.-.++..+|..|.+.|+.++|++.|.+.+.+. ...
T Consensus 35 ir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~-~~~-------------------------------------------- 69 (177)
T PF10602_consen 35 IRMALEDLADHYCKIGDLEEALKAYSRARDYC-TSP-------------------------------------------- 69 (177)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhc-CCH--------------------------------------------
Confidence 45888999999999999999999999988887 211
Q ss_pred hhhHHhhhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 023037 133 RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (288)
Q Consensus 133 r~~f~~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE~~~y~~~~n~~kak~~y~~A~~~a 212 (288)
...+.+.++++.+.+..|++..+...+.+++..++.. +|. ..---+...++-.+...+|+.+|-..+..+...-
T Consensus 70 ~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~---~d~---~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 70 GHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKG---GDW---ERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcc---chH---HHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 1112233445566677777777777888887776664 343 3444456667777777788888877777775444
No 107
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.91 E-value=0.38 Score=47.91 Aligned_cols=146 Identities=12% Similarity=0.108 Sum_probs=109.2
Q ss_pred HHHHHHHHHh----hhhhhhHHhhhhHHHHHh-hhcchhHHHHHHHHHHHhccCCCCC-ccccccchHHHHHHHHHHHHH
Q 023037 120 QTTLKALEEA----KNERLWFKTNLKLCKIWF-DMGEYGRMSKILKELHKSCQREDGT-DDQKKGSQLLEVYAIEIQMYT 193 (288)
Q Consensus 120 ~~~l~~i~~a----~ner~~f~~~~kL~~lyl-~~~~y~~~~~ll~elkk~~~~~~~~-dDk~~~~~llEv~~lE~~~y~ 193 (288)
.+|.+|++.. ...+.-.++.++||.+++ -+++++-|..=++..--+.+..|.. |+| .+-+.+-+..|+
T Consensus 26 kk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvK------f~a~SlLa~lh~ 99 (629)
T KOG2300|consen 26 KKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVK------FQAASLLAHLHH 99 (629)
T ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhh------hHHHHHHHHHHH
Confidence 4555555532 133455689999998776 6788888888888877777766655 555 566777777787
Q ss_pred hhc-CHHHHHHHHHHHHhhhccCCChhHHHHHHhhcchhhhhhccHHHHHHHHHHHHhhhhhhCChhHHHHhHHHHHHHH
Q 023037 194 ETK-NNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLANM 272 (288)
Q Consensus 194 ~~~-n~~kak~~y~~A~~~a~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EaF~~y~e~g~~~a~~~LKY~~L~~i 272 (288)
... +.+-+|+.+++|.+++.+.| ..-..+..+-..+|.-++||..|.+-+--+++..|.++.|- .++|+-+....+
T Consensus 100 ~~~~s~~~~KalLrkaielsq~~p--~wsckllfQLaql~~idkD~~sA~elLavga~sAd~~~~~y-lr~~ftls~~~l 176 (629)
T KOG2300|consen 100 QLAQSFPPAKALLRKAIELSQSVP--YWSCKLLFQLAQLHIIDKDFPSALELLAVGAESADHICFPY-LRMLFTLSMLML 176 (629)
T ss_pred HhcCCCchHHHHHHHHHHHhcCCc--hhhHHHHHHHHHHHhhhccchhHHHHHhccccccchhhhHH-HHHHHHHHHHHH
Confidence 776 89999999999999988765 77778888889999999999999999999999999988762 334444444444
Q ss_pred hc
Q 023037 273 LM 274 (288)
Q Consensus 273 l~ 274 (288)
|.
T Consensus 177 l~ 178 (629)
T KOG2300|consen 177 LI 178 (629)
T ss_pred HH
Confidence 43
No 108
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=95.87 E-value=0.087 Score=50.41 Aligned_cols=94 Identities=13% Similarity=0.063 Sum_probs=77.7
Q ss_pred hHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhH
Q 023037 141 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRI 220 (288)
Q Consensus 141 kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE~~~y~~~~n~~kak~~y~~A~~~a~~I~~p~i 220 (288)
+.|.-.+..|+|.+|..+++++.+..+ ++ .+++..-+.+|..++++..|...+.+|+.+....
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~~~P-----~~-------~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~----- 69 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDLDP-----NN-------AELYADRAQANIKLGNFTEAVADANKAIELDPSL----- 69 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC-----CC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC-----
Confidence 568889999999999999999988722 22 3678888999999999999999999998875432
Q ss_pred HHHHHhhcchhhhhhccHHHHHHHHHHHHhhh
Q 023037 221 MGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (288)
Q Consensus 221 ~a~I~~~~G~l~~~ekdy~~A~syF~EaF~~y 252 (288)
+......|.+|+..|+|..|..+|-++.+..
T Consensus 70 -~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~ 100 (356)
T PLN03088 70 -AKAYLRKGTACMKLEEYQTAKAALEKGASLA 100 (356)
T ss_pred -HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 2234566899999999999999999998744
No 109
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=95.82 E-value=0.14 Score=46.83 Aligned_cols=105 Identities=19% Similarity=0.257 Sum_probs=85.1
Q ss_pred HHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhHH
Q 023037 142 LCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIM 221 (288)
Q Consensus 142 L~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE~~~y~~~~n~~kak~~y~~A~~~a~~I~~p~i~ 221 (288)
++...+..|+|..|...++++...-+ +|- |.+..++-+|-..|+...|+..|.+|+.+. +..|.+.
T Consensus 106 ~gk~~~~~g~~~~A~~~~rkA~~l~p-----~d~-------~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~--~~~p~~~ 171 (257)
T COG5010 106 QGKNQIRNGNFGEAVSVLRKAARLAP-----TDW-------EAWNLLGAALDQLGRFDEARRAYRQALELA--PNEPSIA 171 (257)
T ss_pred HHHHHHHhcchHHHHHHHHHHhccCC-----CCh-------hhhhHHHHHHHHccChhHHHHHHHHHHHhc--cCCchhh
Confidence 88899999999999999999988733 455 899999999999999999999999998875 3446666
Q ss_pred HHHHhhcchhhhhhccHHHHHHHHHHHHhhhhhhCChhHHHHhHH
Q 023037 222 GIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKY 266 (288)
Q Consensus 222 a~I~~~~G~l~~~ekdy~~A~syF~EaF~~y~e~g~~~a~~~LKY 266 (288)
.-+ |..++-.||+++|..++.++..+ ...+++..+-|..
T Consensus 172 nNl----gms~~L~gd~~~A~~lll~a~l~--~~ad~~v~~NLAl 210 (257)
T COG5010 172 NNL----GMSLLLRGDLEDAETLLLPAYLS--PAADSRVRQNLAL 210 (257)
T ss_pred hhH----HHHHHHcCCHHHHHHHHHHHHhC--CCCchHHHHHHHH
Confidence 655 77789999999999999998552 3345555555443
No 110
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=95.76 E-value=0.9 Score=42.37 Aligned_cols=216 Identities=15% Similarity=0.243 Sum_probs=119.8
Q ss_pred cCCCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHH-----------HHHHHHHHHHHhhhhhhhHHH
Q 023037 27 LVETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMM-----------DAYREMLTYIKSAVTRNYSEK 95 (288)
Q Consensus 27 ~~~~d~~~Al~~f~~ii~~~~e~~~~~~kal~~l~~l~~~~g~~~~~l-----------~~~~~~l~~~~~~v~ka~~~k 95 (288)
+-.+++..+|.... +-..++ +-......-+.+.|.-+|+++..+ +.++.+-.|+.. ....++
T Consensus 12 fy~G~Y~~~i~e~~-~~~~~~---~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~~~~~l~av~~la~y~~~---~~~~e~ 84 (290)
T PF04733_consen 12 FYLGNYQQCINEAS-LKSFSP---ENKLERDFYQYRSYIALGQYDSVLSEIKKSSSPELQAVRLLAEYLSS---PSDKES 84 (290)
T ss_dssp HCTT-HHHHCHHHH-CHTSTC---HHHHHHHHHHHHHHHHTT-HHHHHHHS-TTSSCCCHHHHHHHHHHCT---STTHHC
T ss_pred HHhhhHHHHHHHhh-ccCCCc---hhHHHHHHHHHHHHHHcCChhHHHHHhccCCChhHHHHHHHHHHHhC---ccchHH
Confidence 46788888887777 322222 112344445566666667766543 333334444421 123455
Q ss_pred HHHHHHHHhccCCCcchhhHH----------HHHHHHHHHHHHhhhhhhhHHhhhh--HHHHHhhhcchhHHHHHHHHHH
Q 023037 96 CINNIMDFVSGSASQNFSLLR----------EFYQTTLKALEEAKNERLWFKTNLK--LCKIWFDMGEYGRMSKILKELH 163 (288)
Q Consensus 96 ~i~~ild~~~~~~~~~~~~~~----------~~~~~~l~~i~~a~ner~~f~~~~k--L~~lyl~~~~y~~~~~ll~elk 163 (288)
.+..+-+.+....+.+..... .-++-+++.+... -.+++. .+.+|+..++++-|.+.++..+
T Consensus 85 ~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~ 158 (290)
T PF04733_consen 85 ALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQ 158 (290)
T ss_dssp HHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 555544544432110110110 0011222222111 234444 6789999999999999999998
Q ss_pred HhccCCCCCccccccchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCC-hhHHHHHHhhcchhhhhhccHHHHH
Q 023037 164 KSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH-PRIMGIIRECGGKMHMAERQWADAA 242 (288)
Q Consensus 164 k~~~~~~~~dDk~~~~~llEv~~lE~~~y~~~~n~~kak~~y~~A~~~a~~I~~-p~i~a~I~~~~G~l~~~ekdy~~A~ 242 (288)
++ ||. +.++-+...-..++....++..|-..|.... ..-+. |. +....+..|+..|+|..|.
T Consensus 159 ~~-------~eD---~~l~qLa~awv~l~~g~e~~~~A~y~f~El~---~~~~~t~~----~lng~A~~~l~~~~~~eAe 221 (290)
T PF04733_consen 159 QI-------DED---SILTQLAEAWVNLATGGEKYQDAFYIFEELS---DKFGSTPK----LLNGLAVCHLQLGHYEEAE 221 (290)
T ss_dssp CC-------SCC---HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHH---CCS--SHH----HHHHHHHHHHHCT-HHHHH
T ss_pred hc-------CCc---HHHHHHHHHHHHHHhCchhHHHHHHHHHHHH---hccCCCHH----HHHHHHHHHHHhCCHHHHH
Confidence 88 444 4554433333444444457999999998842 22222 33 3445677899999999999
Q ss_pred HHHHHHHhhhhhhCChhHHHHhHHHHHHHHhcCCC
Q 023037 243 TDFFEAFKNYDEAGNQRRIQCLKYLVLANMLMESE 277 (288)
Q Consensus 243 syF~EaF~~y~e~g~~~a~~~LKY~~L~~il~~~~ 277 (288)
+.+.+|++ .+|+-..+|=.++.|..+.|.+
T Consensus 222 ~~L~~al~-----~~~~~~d~LaNliv~~~~~gk~ 251 (290)
T PF04733_consen 222 ELLEEALE-----KDPNDPDTLANLIVCSLHLGKP 251 (290)
T ss_dssp HHHHHHCC-----C-CCHHHHHHHHHHHHHHTT-T
T ss_pred HHHHHHHH-----hccCCHHHHHHHHHHHHHhCCC
Confidence 99999975 3344455677889999988876
No 111
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=95.67 E-value=0.68 Score=48.87 Aligned_cols=197 Identities=14% Similarity=0.168 Sum_probs=130.5
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhccCC
Q 023037 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (288)
Q Consensus 29 ~~d~~~Al~~f~~ii~~~~e~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~~~~~~ 108 (288)
-++.++|.-.|-++|..+|+ +| +.+..=+.+|-+.|+...+++.+.+++.+. |.+.--....+|+.++..+-.+.
T Consensus 220 ~~~i~qA~~cy~rAI~~~p~--n~--~~~~ers~L~~~~G~~~~Am~~f~~l~~~~-p~~d~er~~d~i~~~~~~~~~~~ 294 (895)
T KOG2076|consen 220 LGNINQARYCYSRAIQANPS--NW--ELIYERSSLYQKTGDLKRAMETFLQLLQLD-PPVDIERIEDLIRRVAHYFITHN 294 (895)
T ss_pred cccHHHHHHHHHHHHhcCCc--ch--HHHHHHHHHHHHhChHHHHHHHHHHHHhhC-CchhHHHHHHHHHHHHHHHHHhh
Confidence 46778999999999988764 35 556677889999999999999999999999 87777788888888777665432
Q ss_pred CcchhhHHHHHHHHHHHHHHhh---hhhhhHHhhhhHHHHHhhhcchhHHHHHHHHHHH---------------------
Q 023037 109 SQNFSLLREFYQTTLKALEEAK---NERLWFKTNLKLCKIWFDMGEYGRMSKILKELHK--------------------- 164 (288)
Q Consensus 109 ~~~~~~~~~~~~~~l~~i~~a~---ner~~f~~~~kL~~lyl~~~~y~~~~~ll~elkk--------------------- 164 (288)
. . +.+.+.++.+- +++-......=++.+|+...+|+.+...+.+-..
T Consensus 295 ~--------~-e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~ 365 (895)
T KOG2076|consen 295 E--------R-ERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPN 365 (895)
T ss_pred H--------H-HHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhcccccc
Confidence 2 1 33333333322 2333334445688999999999998888777776
Q ss_pred -hccCCCCCccccccchHH------------------------------------HHHHHHHHHHHhhcCHHHHHHHHHH
Q 023037 165 -SCQREDGTDDQKKGSQLL------------------------------------EVYAIEIQMYTETKNNKKLKQLYQK 207 (288)
Q Consensus 165 -~~~~~~~~dDk~~~~~ll------------------------------------Ev~~lE~~~y~~~~n~~kak~~y~~ 207 (288)
.|..+ +|. ++.+ +.|.--...|+..++++.|-.+|..
T Consensus 366 ~~~~~~---~~~---s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~ 439 (895)
T KOG2076|consen 366 ALCEVG---KEL---SYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSP 439 (895)
T ss_pred ccccCC---CCC---CccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 44433 222 2222 2223333444455555555555544
Q ss_pred HHhhhccCCCh-hHHHHHHhhcchhhhhhccHHHHHHHHHHHHhh
Q 023037 208 ALAIKSAIPHP-RIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (288)
Q Consensus 208 A~~~a~~I~~p-~i~a~I~~~~G~l~~~ekdy~~A~syF~EaF~~ 251 (288)
.. .+| .--+.+=.--|.++++.+.|++|..++.-+...
T Consensus 440 i~------~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~ 478 (895)
T KOG2076|consen 440 IT------NREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLIL 478 (895)
T ss_pred Hh------cCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 32 122 222556666788899999999998888877653
No 112
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=95.63 E-value=0.72 Score=45.73 Aligned_cols=85 Identities=15% Similarity=0.127 Sum_probs=65.9
Q ss_pred hhhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCC
Q 023037 138 TNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH 217 (288)
Q Consensus 138 ~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE~~~y~~~~n~~kak~~y~~A~~~a~~I~~ 217 (288)
+-+++|..|+..|+++++..+|++..+-.+ +|. +.|-+-.+.|..+||..++..++-..
T Consensus 376 l~~~~a~all~~g~~~eai~~L~~~~~~~p-----~dp-------~~w~~LAqay~~~g~~~~a~~A~AE~--------- 434 (484)
T COG4783 376 LQLNLAQALLKGGKPQEAIRILNRYLFNDP-----EDP-------NGWDLLAQAYAELGNRAEALLARAEG--------- 434 (484)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhcCC-----CCc-------hHHHHHHHHHHHhCchHHHHHHHHHH---------
Confidence 456799999999999999888888877633 555 77888889999999998888877654
Q ss_pred hhHHHHHHhhcchhhhhhccHHHHHHHHHHHHhhhhhhCCh
Q 023037 218 PRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQ 258 (288)
Q Consensus 218 p~i~a~I~~~~G~l~~~ekdy~~A~syF~EaF~~y~e~g~~ 258 (288)
|+..|+|+.|.....-|-+... .|.|
T Consensus 435 --------------~~~~G~~~~A~~~l~~A~~~~~-~~~~ 460 (484)
T COG4783 435 --------------YALAGRLEQAIIFLMRASQQVK-LGFP 460 (484)
T ss_pred --------------HHhCCCHHHHHHHHHHHHHhcc-CCcH
Confidence 7788888888887777765542 4444
No 113
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.53 E-value=2 Score=39.68 Aligned_cols=196 Identities=14% Similarity=0.134 Sum_probs=134.0
Q ss_pred cccCCCCHHHHHHHHHHhhcCCcc--chhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHH-H
Q 023037 25 KGLVETDPEGALAGFAEVVAMEPE--KAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNI-M 101 (288)
Q Consensus 25 k~~~~~d~~~Al~~f~~ii~~~~e--~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~i-l 101 (288)
+....-+|++-++.+.++++..+. .+...+--+.|+...-...|+.+-|..++.+++.-+ +.-.| -..+..| +
T Consensus 21 r~~~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~R---V~~lkam~l 96 (289)
T KOG3060|consen 21 REETVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKR---VGKLKAMLL 96 (289)
T ss_pred HhccccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChh---HHHHHHHHH
Confidence 455678999999999999986542 233345788889999999999999999999987776 43222 2222222 2
Q ss_pred HHhccCCCcchhhHHHHHHHHHHHHHHhhhhhhhHHhhhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchH
Q 023037 102 DFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQL 181 (288)
Q Consensus 102 d~~~~~~~~~~~~~~~~~~~~l~~i~~a~ner~~f~~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~l 181 (288)
+..+ +++...++|+-.++ ++-.-+-+.-|...+...+|+--+|.+-+.+..+... .|.
T Consensus 97 Ea~~-----~~~~A~e~y~~lL~------ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~-----~D~------ 154 (289)
T KOG3060|consen 97 EATG-----NYKEAIEYYESLLE------DDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFM-----NDQ------ 154 (289)
T ss_pred HHhh-----chhhHHHHHHHHhc------cCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhc-----CcH------
Confidence 3222 23455555654443 2333344444777788888888776666666555544 455
Q ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhc--cCCChhHHHHHHhhcchhhhhhccHHHHHHHHHHHHhhh
Q 023037 182 LEVYAIEIQMYTETKNNKKLKQLYQKALAIKS--AIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (288)
Q Consensus 182 lEv~~lE~~~y~~~~n~~kak~~y~~A~~~a~--~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EaF~~y 252 (288)
|.+.--+.+|...+++.||--.|...+-+.- ..+|-|+--+..-+|| -.++..|..|+-.|.+.-
T Consensus 155 -EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg-----~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 155 -EAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGG-----AENLELARKYYERALKLN 221 (289)
T ss_pred -HHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhh-----HHHHHHHHHHHHHHHHhC
Confidence 7788888999999999999999998876653 3444555555566676 568889999999998864
No 114
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.53 E-value=0.36 Score=39.45 Aligned_cols=136 Identities=15% Similarity=0.233 Sum_probs=89.3
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHHHHhhh
Q 023037 52 WGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKN 131 (288)
Q Consensus 52 ~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~~~~~~~~~~~~~~~~~~~~l~~i~~a~n 131 (288)
+.|..+...+......|+.+...+.+.+.+...+..+ +...+. ...+.. ..+. -
T Consensus 4 ~~F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~---------------l~~~~~--~~W~~~----~r~~-----l 57 (146)
T PF03704_consen 4 DRFEALVREARAAARAGDPEEAIELLEEALALYRGDF---------------LPDLDD--EEWVEP----ERER-----L 57 (146)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SST---------------TGGGTT--STTHHH----HHHH-----H
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCC---------------CCCCCc--cHHHHH----HHHH-----H
Confidence 4577777777778888888888888888888774432 222111 011111 1111 1
Q ss_pred hhhhHHhhhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhh
Q 023037 132 ERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAI 211 (288)
Q Consensus 132 er~~f~~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE~~~y~~~~n~~kak~~y~~A~~~ 211 (288)
...++.+-.+++..+.+.|+++++..+++.+....+ .|. +.|..=+++|...|+...|.+.|...+..
T Consensus 58 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP-----~~E-------~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~ 125 (146)
T PF03704_consen 58 RELYLDALERLAEALLEAGDYEEALRLLQRALALDP-----YDE-------EAYRLLMRALAAQGRRAEALRVYERYRRR 125 (146)
T ss_dssp HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST-----T-H-------HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCC-----CCH-------HHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 244557788999999999999999999999988832 233 68888899999999999999999998655
Q ss_pred hc---cCCC-hhHHHHHH
Q 023037 212 KS---AIPH-PRIMGIIR 225 (288)
Q Consensus 212 a~---~I~~-p~i~a~I~ 225 (288)
-. ++.. |.+.+..+
T Consensus 126 l~~elg~~Ps~~~~~l~~ 143 (146)
T PF03704_consen 126 LREELGIEPSPETRALYR 143 (146)
T ss_dssp HHHHHS----HHHHHHHH
T ss_pred HHHHhCcCcCHHHHHHHH
Confidence 44 3433 66666544
No 115
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.52 E-value=0.84 Score=45.57 Aligned_cols=104 Identities=11% Similarity=0.053 Sum_probs=64.8
Q ss_pred HhhhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCC
Q 023037 137 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP 216 (288)
Q Consensus 137 ~~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE~~~y~~~~n~~kak~~y~~A~~~a~~I~ 216 (288)
-+..=-|.++.++++|++|.+-+.....+-+.. +..--....=|+---...- =.+|+..|-.++++|..+.+.--
T Consensus 463 Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~----~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce 537 (606)
T KOG0547|consen 463 EVYNLFAEILTDQQQFDKAVKQYDKAIELEPRE----HLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCE 537 (606)
T ss_pred hHHHHHHHHHhhHHhHHHHHHHHHHHHhhcccc----ccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHH
Confidence 567788999999999999999988887773321 1100000011221111111 23799999999999987755322
Q ss_pred C-hhHHHHHHhhcchhhhhhccHHHHHHHHHHHHhhh
Q 023037 217 H-PRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (288)
Q Consensus 217 ~-p~i~a~I~~~~G~l~~~ekdy~~A~syF~EaF~~y 252 (288)
. -..+|++. ...++-+.|..+|-+|-...
T Consensus 538 ~A~~tlaq~~-------lQ~~~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 538 QAYETLAQFE-------LQRGKIDEAIELFEKSAQLA 567 (606)
T ss_pred HHHHHHHHHH-------HHHhhHHHHHHHHHHHHHHH
Confidence 2 23444444 45556688999998886544
No 116
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=95.45 E-value=0.93 Score=47.90 Aligned_cols=191 Identities=15% Similarity=0.221 Sum_probs=136.2
Q ss_pred CCCHHHHHHHHHHhhcCCc-cchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------------HHHhhhhhhhHH
Q 023037 29 ETDPEGALAGFAEVVAMEP-EKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLT-------------YIKSAVTRNYSE 94 (288)
Q Consensus 29 ~~d~~~Al~~f~~ii~~~~-e~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~-------------~~~~~v~ka~~~ 94 (288)
.++...|.+.|++++...+ ...+|....+...++.+...++-+.|++.+...+. +..--+..+..+
T Consensus 254 ~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d 333 (895)
T KOG2076|consen 254 TGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSD 333 (895)
T ss_pred hChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHH
Confidence 5788899999999999876 46788888888889999999988888887776665 110124467788
Q ss_pred HHHHHHHHHhccC-CC----------------------cchhhHHHH--HHHHHHHHH---------H-hhhhhhhH---
Q 023037 95 KCINNIMDFVSGS-AS----------------------QNFSLLREF--YQTTLKALE---------E-AKNERLWF--- 136 (288)
Q Consensus 95 k~i~~ild~~~~~-~~----------------------~~~~~~~~~--~~~~l~~i~---------~-a~ner~~f--- 136 (288)
+.+..|++..... +. .+.+....+ .-+|+--++ . -..+..|+
T Consensus 334 ~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~ 413 (895)
T KOG2076|consen 334 KALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDD 413 (895)
T ss_pred HhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhh
Confidence 8899988877611 00 111111111 122222111 1 11223344
Q ss_pred -HhhhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccC
Q 023037 137 -KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAI 215 (288)
Q Consensus 137 -~~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE~~~y~~~~n~~kak~~y~~A~~~a~~I 215 (288)
.+.+.++.+|.+.|+|.+|..++..+... +. ....-|+..-++.|..++.+..|.+.|.+++..++.-
T Consensus 414 ~dL~~d~a~al~~~~~~~~Al~~l~~i~~~-------~~----~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~ 482 (895)
T KOG2076|consen 414 VDLYLDLADALTNIGKYKEALRLLSPITNR-------EG----YQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDN 482 (895)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHhcC-------cc----ccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCc
Confidence 67889999999999999999999998766 22 2226789999999999999999999999999999988
Q ss_pred CC-hhHHHHHHhhcch
Q 023037 216 PH-PRIMGIIRECGGK 230 (288)
Q Consensus 216 ~~-p~i~a~I~~~~G~ 230 (288)
.+ .--.+.|....|.
T Consensus 483 ~D~Ri~Lasl~~~~g~ 498 (895)
T KOG2076|consen 483 LDARITLASLYQQLGN 498 (895)
T ss_pred hhhhhhHHHHHHhcCC
Confidence 88 5556676665554
No 117
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.39 E-value=0.59 Score=45.72 Aligned_cols=130 Identities=15% Similarity=0.217 Sum_probs=82.7
Q ss_pred CCCHHHHHHHHHHhhcCCccchh--------hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHH
Q 023037 29 ETDPEGALAGFAEVVAMEPEKAE--------WGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNI 100 (288)
Q Consensus 29 ~~d~~~Al~~f~~ii~~~~e~~~--------~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~i 100 (288)
.+|-+.|+..|++-++.+|++.+ -+-+.-+.=|.-.++.|+|.++-+.|++-+.+= |.
T Consensus 216 ~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~id-P~------------- 281 (486)
T KOG0550|consen 216 NDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNID-PS------------- 281 (486)
T ss_pred ccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCC-cc-------------
Confidence 46778999999999999885322 112222344566788899999999998876655 32
Q ss_pred HHHhccCCCcchhhHHHHHHHHHHHHHHhhhhhhhHHhhhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccch
Q 023037 101 MDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQ 180 (288)
Q Consensus 101 ld~~~~~~~~~~~~~~~~~~~~l~~i~~a~ner~~f~~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~ 180 (288)
|.+...+++.++|.+....|+..++..-..+..++ | +.
T Consensus 282 ------------------------------n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i-------D-----~s 319 (486)
T KOG0550|consen 282 ------------------------------NKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI-------D-----SS 319 (486)
T ss_pred ------------------------------ccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc-------C-----HH
Confidence 22333455566666666666666666666666665 2 23
Q ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhcc
Q 023037 181 LLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSA 214 (288)
Q Consensus 181 llEv~~lE~~~y~~~~n~~kak~~y~~A~~~a~~ 214 (288)
.++-+..-.+.|..++.+..|.+-|++|.+...+
T Consensus 320 yikall~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 320 YIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 4555666666666666666666666666655555
No 118
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.32 E-value=0.99 Score=41.00 Aligned_cols=177 Identities=11% Similarity=0.036 Sum_probs=115.7
Q ss_pred hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHHHHh
Q 023037 50 AEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEA 129 (288)
Q Consensus 50 ~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~~~~~~~~~~~~~~~~~~~~l~~i~~a 129 (288)
.....++-.+|+-=|.++|++..+..-+++.+..= ++...+.+.... + +... +..+..++-|..++..
T Consensus 31 ~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~---~--Yq~~--Ge~~~A~e~YrkAlsl---- 98 (250)
T COG3063 31 RNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAH---Y--YQKL--GENDLADESYRKALSL---- 98 (250)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHH---H--HHHc--CChhhHHHHHHHHHhc----
Confidence 34467888899999999999999999998888777 554443333322 1 2211 1233566666666653
Q ss_pred hhhhhhHHhhhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Q 023037 130 KNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKAL 209 (288)
Q Consensus 130 ~ner~~f~~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE~~~y~~~~n~~kak~~y~~A~ 209 (288)
...--++.+|.|..+..+|+|+++..-+.+...- |.-.. .-..+..-+-.....|....|+..|++|+
T Consensus 99 --~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~---P~Y~~-------~s~t~eN~G~Cal~~gq~~~A~~~l~raL 166 (250)
T COG3063 99 --APNNGDVLNNYGAFLCAQGRPEEAMQQFERALAD---PAYGE-------PSDTLENLGLCALKAGQFDQAEEYLKRAL 166 (250)
T ss_pred --CCCccchhhhhhHHHHhCCChHHHHHHHHHHHhC---CCCCC-------cchhhhhhHHHHhhcCCchhHHHHHHHHH
Confidence 2333467889999999999999987766665433 21111 11233334444556688999999999998
Q ss_pred hhhccCCChhHHHHHHhhcchhhhhhccHHHHHHHHHHHHhhhhhhCChhH
Q 023037 210 AIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRR 260 (288)
Q Consensus 210 ~~a~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EaF~~y~e~g~~~a 260 (288)
......+-+. +.-..+|+.+|||..|..+| +-|+..|.+.+
T Consensus 167 ~~dp~~~~~~------l~~a~~~~~~~~y~~Ar~~~----~~~~~~~~~~A 207 (250)
T COG3063 167 ELDPQFPPAL------LELARLHYKAGDYAPARLYL----ERYQQRGGAQA 207 (250)
T ss_pred HhCcCCChHH------HHHHHHHHhcccchHHHHHH----HHHHhcccccH
Confidence 8776666543 23356799999999998874 44555555444
No 119
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.31 E-value=0.25 Score=41.50 Aligned_cols=74 Identities=18% Similarity=0.184 Sum_probs=62.1
Q ss_pred hhHHHHHHhhcc-cCCCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhh
Q 023037 15 VSRVLCSILEKG-LVETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTR 90 (288)
Q Consensus 15 ~~~~~~y~~ak~-~~~~d~~~Al~~f~~ii~~~~e~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~k 90 (288)
.+.-.+|..|+. +..+++++|++.|+.+...- ..++|..+|-..|+..|++.|++++++..+++++.+- |.=++
T Consensus 8 ~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ry-P~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh-P~hp~ 82 (142)
T PF13512_consen 8 KSPQELYQEAQEALQKGNYEEAIKQLEALDTRY-PFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH-PTHPN 82 (142)
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCCC
Confidence 345667888876 57899999999999997654 3578888999999999999999999999999999887 75443
No 120
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=95.29 E-value=0.43 Score=43.94 Aligned_cols=109 Identities=12% Similarity=0.044 Sum_probs=80.6
Q ss_pred HHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhHHHHH
Q 023037 145 IWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGII 224 (288)
Q Consensus 145 lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE~~~y~~~~n~~kak~~y~~A~~~a~~I~~p~i~a~I 224 (288)
+++..|+|+++...++.+.+.-++. .+.-+++..-+++|+..|++..|...|....+.-..- |+ ....
T Consensus 152 l~~~~~~y~~Ai~af~~fl~~yP~s---------~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s--~~-~~dA 219 (263)
T PRK10803 152 LVQDKSRQDDAIVAFQNFVKKYPDS---------TYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKS--PK-AADA 219 (263)
T ss_pred HHHhcCCHHHHHHHHHHHHHHCcCC---------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC--cc-hhHH
Confidence 4567799999999988888873321 5556888999999999999999999988876543221 22 1222
Q ss_pred HhhcchhhhhhccHHHHHHHHHHHHhhhhhhCChhHHHHhHHH
Q 023037 225 RECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYL 267 (288)
Q Consensus 225 ~~~~G~l~~~ekdy~~A~syF~EaF~~y~e~g~~~a~~~LKY~ 267 (288)
...-|.++...||++.|...|-+..+.|- +++.+..+.+.|
T Consensus 220 l~klg~~~~~~g~~~~A~~~~~~vi~~yP--~s~~a~~A~~rL 260 (263)
T PRK10803 220 MFKVGVIMQDKGDTAKAKAVYQQVIKKYP--GTDGAKQAQKRL 260 (263)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCc--CCHHHHHHHHHH
Confidence 23346677889999999999999999885 566666666654
No 121
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.24 E-value=2.9 Score=39.81 Aligned_cols=157 Identities=16% Similarity=0.225 Sum_probs=112.2
Q ss_pred chhhHHHHHHHHHHHHHHh--hhhhhhHHhhhhHHHHHhhhcchhHHHHHHHHHHHhc-cCCCCCccccccchHHHHHHH
Q 023037 111 NFSLLREFYQTTLKALEEA--KNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSC-QREDGTDDQKKGSQLLEVYAI 187 (288)
Q Consensus 111 ~~~~~~~~~~~~l~~i~~a--~ner~~f~~~~kL~~lyl~~~~y~~~~~ll~elkk~~-~~~~~~dDk~~~~~llEv~~l 187 (288)
+.+.....++-+++.++.- .-+--...+-..||++|=..+++..|-..+--+-.-- +.. -|- ...+..+.=
T Consensus 76 ~~e~~Kei~~~~l~~iq~rvisfeEqv~~irl~LAsiYE~Eq~~~~aaq~L~~I~~~tg~~~---~d~---~~kl~l~ir 149 (399)
T KOG1497|consen 76 EDELRKEISHFTLEKIQPRVISFEEQVASIRLHLASIYEKEQNWRDAAQVLVGIPLDTGQKA---YDV---EQKLLLCIR 149 (399)
T ss_pred CHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccCcccchhh---hhh---HHHHHHHHH
Confidence 3557778888888877642 2445556889999999999999999766655443221 000 222 677888888
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHhhhccCCChhHHHHHHhhcchhhhhhccHHHHHHHHHHHHhhhhhhCC-hhHHHHhHH
Q 023037 188 EIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGN-QRRIQCLKY 266 (288)
Q Consensus 188 E~~~y~~~~n~~kak~~y~~A~~~a~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EaF~~y~e~g~-~~a~~~LKY 266 (288)
..++|...++...|-++-.+|.-..+.-..|.++-..+.|-..+.=..|.|-.|..-.||= . +-+.++ ..+..+|+-
T Consensus 150 iarlyLe~~d~veae~~inRaSil~a~~~Ne~Lqie~kvc~ARvlD~krkFlEAAqrYyel-s-~~ki~~e~~~~~aL~~ 227 (399)
T KOG1497|consen 150 IARLYLEDDDKVEAEAYINRASILQAESSNEQLQIEYKVCYARVLDYKRKFLEAAQRYYEL-S-QRKIVDESERLEALKK 227 (399)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-HHHhcchHHHHHHHHH
Confidence 9999999999888888777776555544779999999999888877777775555554532 1 223454 688999999
Q ss_pred HHHHHHhcC
Q 023037 267 LVLANMLME 275 (288)
Q Consensus 267 ~~L~~il~~ 275 (288)
.+-|-+|..
T Consensus 228 a~~CtlLA~ 236 (399)
T KOG1497|consen 228 ALQCTLLAS 236 (399)
T ss_pred hHhheeecC
Confidence 999988864
No 122
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=95.20 E-value=0.28 Score=40.54 Aligned_cols=94 Identities=15% Similarity=0.015 Sum_probs=76.3
Q ss_pred hHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhH
Q 023037 141 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRI 220 (288)
Q Consensus 141 kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE~~~y~~~~n~~kak~~y~~A~~~a~~I~~p~i 220 (288)
.+|..+.+.|+|+++...++.+...- | ++ .+++..-+.++..+|++..|...|.+|......-+.
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~--P---~~-------~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~--- 93 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQ--P---WS-------WRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPE--- 93 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC--C---Cc-------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcH---
Confidence 57999999999999999999987661 1 22 488899999999999999999999999987654333
Q ss_pred HHHHHhhcchhhhhhccHHHHHHHHHHHHhhh
Q 023037 221 MGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (288)
Q Consensus 221 ~a~I~~~~G~l~~~ekdy~~A~syF~EaF~~y 252 (288)
....-|..+...|+++.|...|-.+.+.-
T Consensus 94 ---a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 94 ---PVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred ---HHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 22344667888999999999999998743
No 123
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=95.16 E-value=0.45 Score=49.03 Aligned_cols=185 Identities=16% Similarity=0.168 Sum_probs=112.6
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhh-----hhhhHHHHHHHHHHH
Q 023037 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAV-----TRNYSEKCINNIMDF 103 (288)
Q Consensus 29 ~~d~~~Al~~f~~ii~~~~e~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v-----~ka~~~k~i~~ild~ 103 (288)
-++.++|++++++.+..-++ ..|-+.++|+|+-+.++.+.+.+.|.+-+... |.. .=++.+....+++
T Consensus 664 ld~~eeA~rllEe~lk~fp~----f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~c-P~~ipLWllLakleEk~~~~~-- 736 (913)
T KOG0495|consen 664 LDNVEEALRLLEEALKSFPD----FHKLWLMLGQIEEQMENIEMAREAYLQGTKKC-PNSIPLWLLLAKLEEKDGQLV-- 736 (913)
T ss_pred hhhHHHHHHHHHHHHHhCCc----hHHHHHHHhHHHHHHHHHHHHHHHHHhccccC-CCCchHHHHHHHHHHHhcchh--
Confidence 35567777777777665432 45667788888888888888888887765554 431 1122222221100
Q ss_pred hccCCCcchhhHHHHHHHHHHHHHHhhhhhhhHHhhhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHH
Q 023037 104 VSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLE 183 (288)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~l~~i~~a~ner~~f~~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llE 183 (288)
-..-.++ ...++..+|.-+|+ -.+..-+..|+-+.|..+..+..+-|+..+ .+..|
T Consensus 737 ----------rAR~ild--rarlkNPk~~~lwl----e~Ir~ElR~gn~~~a~~lmakALQecp~sg--------~LWaE 792 (913)
T KOG0495|consen 737 ----------RARSILD--RARLKNPKNALLWL----ESIRMELRAGNKEQAELLMAKALQECPSSG--------LLWAE 792 (913)
T ss_pred ----------hHHHHHH--HHHhcCCCcchhHH----HHHHHHHHcCCHHHHHHHHHHHHHhCCccc--------hhHHH
Confidence 0011111 11223344666676 122333446777889999999999987642 55566
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhHHHHHHhhcchhhhhhccHHHHHHHHHHHHhhhhhhCCh
Q 023037 184 VYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQ 258 (288)
Q Consensus 184 v~~lE~~~y~~~~n~~kak~~y~~A~~~a~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EaF~~y~e~g~~ 258 (288)
-+-+|..- +.-.|...++.++ -.+|++.-.| |+++-.|+.+++|.+-|..|.+-=...||.
T Consensus 793 aI~le~~~----~rkTks~DALkkc------e~dphVllai----a~lfw~e~k~~kar~Wf~Ravk~d~d~GD~ 853 (913)
T KOG0495|consen 793 AIWLEPRP----QRKTKSIDALKKC------EHDPHVLLAI----AKLFWSEKKIEKAREWFERAVKKDPDNGDA 853 (913)
T ss_pred HHHhccCc----ccchHHHHHHHhc------cCCchhHHHH----HHHHHHHHHHHHHHHHHHHHHccCCccchH
Confidence 66555433 3344455555554 1238776655 889999999999999999998765555553
No 124
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.15 E-value=1.7 Score=43.26 Aligned_cols=171 Identities=11% Similarity=0.120 Sum_probs=115.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhccC--CCcchhhHHHHHHHHHHHHHHhh-hhhhh
Q 023037 59 QTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGS--ASQNFSLLREFYQTTLKALEEAK-NERLW 135 (288)
Q Consensus 59 ~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~~~~~--~~~~~~~~~~~~~~~l~~i~~a~-ner~~ 135 (288)
=+|.-|.-.++.+++..++++.+.+. +.-.-+- . .+|+- .=+|.+....-|..+.+. +. +-|-|
T Consensus 335 iIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aW------T---LmGHEyvEmKNt~AAi~sYRrAvdi---~p~DyRAW 401 (559)
T KOG1155|consen 335 IIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAW------T---LMGHEYVEMKNTHAAIESYRRAVDI---NPRDYRAW 401 (559)
T ss_pred eehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHH------H---HhhHHHHHhcccHHHHHHHHHHHhc---CchhHHHH
Confidence 36778888899999999999999887 4321111 1 11110 002333444444444442 22 33666
Q ss_pred HHhhhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccC
Q 023037 136 FKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAI 215 (288)
Q Consensus 136 f~~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE~~~y~~~~n~~kak~~y~~A~~~a~~I 215 (288)
+ -||..|--.+..-=|.-.+++....-+ .|. -+...-++.|.++++...|...|..|....-+
T Consensus 402 Y----GLGQaYeim~Mh~YaLyYfqkA~~~kP-----nDs-------Rlw~aLG~CY~kl~~~~eAiKCykrai~~~dt- 464 (559)
T KOG1155|consen 402 Y----GLGQAYEIMKMHFYALYYFQKALELKP-----NDS-------RLWVALGECYEKLNRLEEAIKCYKRAILLGDT- 464 (559)
T ss_pred h----hhhHHHHHhcchHHHHHHHHHHHhcCC-----Cch-------HHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-
Confidence 5 345555545544446777888777743 455 45666789999999999999999998766544
Q ss_pred CChhHHHHHHhhcchhhhhhccHHHHHHHHHHHHhhhhhhCC--hhHHHHh
Q 023037 216 PHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGN--QRRIQCL 264 (288)
Q Consensus 216 ~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EaF~~y~e~g~--~~a~~~L 264 (288)
-|.+....|++|=+-+|+.+|-.+|-.-.+-....|. |.-+.+.
T Consensus 465 -----e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~ 510 (559)
T KOG1155|consen 465 -----EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKAR 510 (559)
T ss_pred -----chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHH
Confidence 6777788899999999999999999999988876663 4444443
No 125
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=94.99 E-value=0.7 Score=44.44 Aligned_cols=182 Identities=15% Similarity=0.169 Sum_probs=117.3
Q ss_pred HHHhhccc-CCCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Q 023037 20 CSILEKGL-VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCIN 98 (288)
Q Consensus 20 ~y~~ak~~-~~~d~~~Al~~f~~ii~~~~e~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~ 98 (288)
.+.-++.+ ..+....|+..|+..|+.+++ ...|++.=+.+|.-.|+-..++.-+..++.+- +.+.-++..+..-
T Consensus 41 hlElGk~lla~~Q~sDALt~yHaAve~dp~----~Y~aifrRaT~yLAmGksk~al~Dl~rVlelK-pDF~~ARiQRg~v 115 (504)
T KOG0624|consen 41 HLELGKELLARGQLSDALTHYHAAVEGDPN----NYQAIFRRATVYLAMGKSKAALQDLSRVLELK-PDFMAARIQRGVV 115 (504)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCCch----hHHHHHHHHHHHhhhcCCccchhhHHHHHhcC-ccHHHHHHHhchh
Confidence 33344543 567778999999999988753 36788899999999999999999999999887 8877666555442
Q ss_pred HHHHHhccCCCcchhhHHHHHHHHHHHHHHhhhh--------hhhH----HhhhhHHHHHhhhcchhHHHHHHHHHHHhc
Q 023037 99 NIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE--------RLWF----KTNLKLCKIWFDMGEYGRMSKILKELHKSC 166 (288)
Q Consensus 99 ~ild~~~~~~~~~~~~~~~~~~~~l~~i~~a~ne--------r~~f----~~~~kL~~lyl~~~~y~~~~~ll~elkk~~ 166 (288)
- .+ ++ .+++...-+...|+...++ ++.. ......+.-++..|+++.+.+.+..+..++
T Consensus 116 l-----lK-~G----ele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~ 185 (504)
T KOG0624|consen 116 L-----LK-QG----ELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ 185 (504)
T ss_pred h-----hh-cc----cHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC
Confidence 1 00 11 1222222222222221111 1111 112234456778899999999999998884
Q ss_pred cCCCCCccccccchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhcc--------------CCC-hhHHHHHHhhc
Q 023037 167 QREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSA--------------IPH-PRIMGIIRECG 228 (288)
Q Consensus 167 ~~~~~~dDk~~~~~llEv~~lE~~~y~~~~n~~kak~~y~~A~~~a~~--------------I~~-p~i~a~I~~~~ 228 (288)
.= | ++.+-.-.+.|.+.+...+|..-+..+.++++. |.| -.-.++||||.
T Consensus 186 ~W-----d-------a~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECL 250 (504)
T KOG0624|consen 186 PW-----D-------ASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECL 250 (504)
T ss_pred cc-----h-------hHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 31 2 467777888888888888887777777665553 444 44566777775
No 126
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=94.95 E-value=1.9 Score=41.18 Aligned_cols=130 Identities=14% Similarity=0.235 Sum_probs=97.4
Q ss_pred CHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHHHHhhhhhhhHHhhhhHHHHHhh
Q 023037 69 KYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFD 148 (288)
Q Consensus 69 ~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~~~~~~~~~~~~~~~~~~~~l~~i~~a~ner~~f~~~~kL~~lyl~ 148 (288)
.-+.+++.|+.+..-++..|+.=...+..-.+.+.++ +.+..-.+.+...+.++..+..--+..+..-.++++++
T Consensus 53 ~~~~~l~lY~NFvsefe~kINplslvei~l~~~~~~~-----D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~ 127 (380)
T KOG2908|consen 53 AGDLLLQLYLNFVSEFETKINPLSLVEILLVVSEQIS-----DKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLE 127 (380)
T ss_pred cchHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHhc-----cHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHh
Confidence 4467789999999988788888777777766666665 23355566666666666665555566888889999999
Q ss_pred hcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHh
Q 023037 149 MGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALA 210 (288)
Q Consensus 149 ~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE~~~y~~~~n~~kak~~y~~A~~ 210 (288)
.|+..++.++|.++++.++..++.+. ..=---|.+=+++|...+|++ ++|+.|+.
T Consensus 128 i~DLk~~kk~ldd~~~~ld~~~~v~~----~Vh~~fY~lssqYyk~~~d~a---~yYr~~L~ 182 (380)
T KOG2908|consen 128 INDLKEIKKLLDDLKSMLDSLDGVTS----NVHSSFYSLSSQYYKKIGDFA---SYYRHALL 182 (380)
T ss_pred cccHHHHHHHHHHHHHHHhcccCCCh----hhhhhHHHHHHHHHHHHHhHH---HHHHHHHH
Confidence 99999999999999999888755433 333456888999999999987 45555543
No 127
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.94 E-value=0.22 Score=47.47 Aligned_cols=181 Identities=10% Similarity=0.054 Sum_probs=108.3
Q ss_pred CCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhccC--
Q 023037 30 TDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGS-- 107 (288)
Q Consensus 30 ~d~~~Al~~f~~ii~~~~e~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~~~~~-- 107 (288)
+.|..|+..|.+.++.-|.... -+..++.|+-..+++++++++|+..+..- +.- ++.+.-+
T Consensus 270 dQP~~AL~~~~~gld~fP~~VT----~l~g~ARi~eam~~~~~a~~lYk~vlk~~-~~n------------vEaiAcia~ 332 (478)
T KOG1129|consen 270 DQPERALLVIGEGLDSFPFDVT----YLLGQARIHEAMEQQEDALQLYKLVLKLH-PIN------------VEAIACIAV 332 (478)
T ss_pred ccHHHHHHHHhhhhhcCCchhh----hhhhhHHHHHHHHhHHHHHHHHHHHHhcC-Ccc------------ceeeeeeee
Confidence 4555566666555555442221 12345566666666666666666666554 210 1111111
Q ss_pred ---CCcchhhHHHHHHHHHHHHHHhhhhhhhHHhhhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHH
Q 023037 108 ---ASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEV 184 (288)
Q Consensus 108 ---~~~~~~~~~~~~~~~l~~i~~a~ner~~f~~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv 184 (288)
-+.+++..-.+|...+.. +-..- .+-++++-.-+-.++|+-+...++.......++ ..-.+|
T Consensus 333 ~yfY~~~PE~AlryYRRiLqm----G~~sp--eLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~---------~~aaDv 397 (478)
T KOG1129|consen 333 GYFYDNNPEMALRYYRRILQM----GAQSP--ELFCNIGLCCLYAQQIDLVLPSFQRALSTATQP---------GQAADV 397 (478)
T ss_pred ccccCCChHHHHHHHHHHHHh----cCCCh--HHHhhHHHHHHhhcchhhhHHHHHHHHhhccCc---------chhhhh
Confidence 114555666666554432 11111 345566666667788888888888887775554 344688
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhHHHHHHhhcchhhhhhccHHHHHHHHHHH
Q 023037 185 YAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEA 248 (288)
Q Consensus 185 ~~lE~~~y~~~~n~~kak~~y~~A~~~a~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~Ea 248 (288)
+-.-+.+....|++.-|++.++-|++..+.-.- -..-.|++-+.+||-..|.+++--|
T Consensus 398 WYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~e------alnNLavL~~r~G~i~~Arsll~~A 455 (478)
T KOG1129|consen 398 WYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGE------ALNNLAVLAARSGDILGARSLLNAA 455 (478)
T ss_pred hhccceeEEeccchHHHHHHHHHHhccCcchHH------HHHhHHHHHhhcCchHHHHHHHHHh
Confidence 999999999999999999999998876554333 2223355666777778888876443
No 128
>PRK14574 hmsH outer membrane protein; Provisional
Probab=94.88 E-value=1.9 Score=46.08 Aligned_cols=199 Identities=10% Similarity=0.067 Sum_probs=126.8
Q ss_pred HHHHHHHHHhhcC---Ccc-chhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhccCC
Q 023037 33 EGALAGFAEVVAM---EPE-KAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (288)
Q Consensus 33 ~~Al~~f~~ii~~---~~e-~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~~~~~~ 108 (288)
+.|+..+..++.. .|+ +..| -++..--.-++...|++.++++.|+.+..-- ..+ .+++-..+ -|.+...
T Consensus 268 d~ala~~~~l~~~~~~~p~~~~~~-~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~-~~~-P~y~~~a~---adayl~~- 340 (822)
T PRK14574 268 DKALADYQNLLTRWGKDPEAQADY-QRARIDRLGALLVRHQTADLIKEYEAMEAEG-YKM-PDYARRWA---ASAYIDR- 340 (822)
T ss_pred HHHHHHHHHHHhhccCCCccchHH-HHHHHHHHHHHHHhhhHHHHHHHHHHhhhcC-CCC-CHHHHHHH---HHHHHhc-
Confidence 6799999998873 333 3443 5566677778888999999999999987433 112 22322222 2322221
Q ss_pred CcchhhHHHHHHHHHHHHHHhhhh-hhhHHh--hhhHHHHHhhhcchhHHHHHHHHHHHhccC-C--CCCccccccchHH
Q 023037 109 SQNFSLLREFYQTTLKALEEAKNE-RLWFKT--NLKLCKIWFDMGEYGRMSKILKELHKSCQR-E--DGTDDQKKGSQLL 182 (288)
Q Consensus 109 ~~~~~~~~~~~~~~l~~i~~a~ne-r~~f~~--~~kL~~lyl~~~~y~~~~~ll~elkk~~~~-~--~~~dDk~~~~~ll 182 (288)
..++....+|... +...... .....+ ...|...|++.++|++|..++.++.+..+- . -+..++..+.--.
T Consensus 341 -~~P~kA~~l~~~~---~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~ 416 (822)
T PRK14574 341 -RLPEKAAPILSSL---YYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWI 416 (822)
T ss_pred -CCcHHHHHHHHHH---hhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHH
Confidence 1233444444433 2322111 112223 478999999999999999999999984220 0 1123445556667
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhHHHHHHhhcchhhhhhccHHHHHHHHHHH
Q 023037 183 EVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEA 248 (288)
Q Consensus 183 Ev~~lE~~~y~~~~n~~kak~~y~~A~~~a~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~Ea 248 (288)
+.+.+..+++...||+++|-+.+.+.+..+-+= |. |+..-+-++...+....|...+-.+
T Consensus 417 ~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n--~~----l~~~~A~v~~~Rg~p~~A~~~~k~a 476 (822)
T PRK14574 417 EGQTLLVQSLVALNDLPTAQKKLEDLSSTAPAN--QN----LRIALASIYLARDLPRKAEQELKAV 476 (822)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HH----HHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 999999999999999999999999986655432 32 2234455667777777777777443
No 129
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=94.80 E-value=3 Score=37.72 Aligned_cols=56 Identities=20% Similarity=0.115 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHhhhcc---CCChhHHHHHHhhcchhhhhhccHHHHHHHHHHHHhhhh
Q 023037 198 NKKLKQLYQKALAIKSA---IPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYD 253 (288)
Q Consensus 198 ~~kak~~y~~A~~~a~~---I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EaF~~y~ 253 (288)
..+|..+|.+|..++.. .+||.-.|.+--.+=-.|=--++-.+|..---+||+..-
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~ 200 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAI 200 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 47799999999999986 344999999988874444457888888877777776654
No 130
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.67 E-value=1.8 Score=44.13 Aligned_cols=156 Identities=16% Similarity=0.248 Sum_probs=89.5
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhccCC
Q 023037 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA 108 (288)
Q Consensus 29 ~~d~~~Al~~f~~ii~~~~e~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~~~~~~ 108 (288)
-+-+++|++.++ ..+... -+.+.-=+.+++++|+|++++..|+.+..-- ..-.-+...-+++...+.++
T Consensus 92 lnk~Dealk~~~-~~~~~~------~~ll~L~AQvlYrl~~ydealdiY~~L~kn~----~dd~d~~~r~nl~a~~a~l~ 160 (652)
T KOG2376|consen 92 LNKLDEALKTLK-GLDRLD------DKLLELRAQVLYRLERYDEALDIYQHLAKNN----SDDQDEERRANLLAVAAALQ 160 (652)
T ss_pred cccHHHHHHHHh-cccccc------hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC----CchHHHHHHHHHHHHHHhhh
Confidence 345667777666 222221 1233344678889999999999999885443 22333444445454444332
Q ss_pred CcchhhHHHHHHHHHHHHHHhh-hhhhhHHhhhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHH
Q 023037 109 SQNFSLLREFYQTTLKALEEAK-NERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAI 187 (288)
Q Consensus 109 ~~~~~~~~~~~~~~l~~i~~a~-ner~~f~~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~l 187 (288)
. . . ++... ..--.+....|.|-.+.+.|+|.+|.++|....++|.+.=..+|..--...-|+-.+
T Consensus 161 ~----------~-~---~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~I 226 (652)
T KOG2376|consen 161 V----------Q-L---LQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPI 226 (652)
T ss_pred H----------H-H---HHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHH
Confidence 2 0 0 11100 112244667788999999999999999999995555432111111000233333333
Q ss_pred HHH---HHHhhcCHHHHHHHHHHHH
Q 023037 188 EIQ---MYTETKNNKKLKQLYQKAL 209 (288)
Q Consensus 188 E~~---~y~~~~n~~kak~~y~~A~ 209 (288)
-.| ++.-+|...+|..+|....
T Consensus 227 rvQlayVlQ~~Gqt~ea~~iy~~~i 251 (652)
T KOG2376|consen 227 RVQLAYVLQLQGQTAEASSIYVDII 251 (652)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHH
Confidence 333 4455689999999998754
No 131
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=94.66 E-value=4.2 Score=39.67 Aligned_cols=232 Identities=13% Similarity=0.207 Sum_probs=145.6
Q ss_pred hcccCCCCHHHHHHHHHHhhcCCc--cchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHH
Q 023037 24 EKGLVETDPEGALAGFAEVVAMEP--EKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIM 101 (288)
Q Consensus 24 ak~~~~~d~~~Al~~f~~ii~~~~--e~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~il 101 (288)
+.++...|..+|++.+...=.... ....-.-+.+..++++++..++++.+-+.+..+ +-- ....|....+.|....
T Consensus 20 ~~~la~~~~~~~ie~Ll~~EkqtR~~~D~~s~~kv~~~i~~lc~~~~~w~~Lne~i~~L-skk-rgqlk~ai~~Mvq~~~ 97 (439)
T KOG1498|consen 20 ANNLAQIDLEAAIEELLNLEKQTRLASDMASNTKVLEEIMKLCFSAKDWDLLNEQIRLL-SKK-RGQLKQAIQSMVQQAM 97 (439)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHH-HHH-hhHHHHHHHHHHHHHH
Confidence 445556677777777665433211 122224577889999999999999998877544 222 3467888899999999
Q ss_pred HHhccCCCcchhhHHHHHHHHHHHHHHhhhhhhhH------HhhhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccc
Q 023037 102 DFVSGSASQNFSLLREFYQTTLKALEEAKNERLWF------KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQ 175 (288)
Q Consensus 102 d~~~~~~~~~~~~~~~~~~~~l~~i~~a~ner~~f------~~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk 175 (288)
.++..+++ .++...+++..... .+.++| ++.--|+.++=+.|+..+|..++.++.=- .-|+=|+
T Consensus 98 ~y~~~~~d--~~~k~~li~tLr~V-----tegkIyvEvERarlTk~L~~ike~~Gdi~~Aa~il~el~VE---Tygsm~~ 167 (439)
T KOG1498|consen 98 TYIDGTPD--LETKIKLIETLRTV-----TEGKIYVEVERARLTKMLAKIKEEQGDIAEAADILCELQVE---TYGSMEK 167 (439)
T ss_pred HhccCCCC--chhHHHHHHHHHHh-----hcCceEEeehHHHHHHHHHHHHHHcCCHHHHHHHHHhcchh---hhhhhHH
Confidence 99988774 44555555554443 233333 56667899999999999999999988433 1111233
Q ss_pred cccchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCC-hhHHH---HHHhhcchhhhhhccHHHHHHHHHHHHhh
Q 023037 176 KKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH-PRIMG---IIRECGGKMHMAERQWADAATDFFEAFKN 251 (288)
Q Consensus 176 ~~~~~llEv~~lE~~~y~~~~n~~kak~~y~~A~~~a~~I~~-p~i~a---~I~~~~G~l~~~ekdy~~A~syF~EaF~~ 251 (288)
.--++..+-+.+++...++|-+|--+-.+. ...... |..+- .-.+.==.++.+++.|=++.++.-+..+.
T Consensus 168 ---~ekV~fiLEQmrKOG~~~D~vra~i~skKI---~~K~F~~~~~~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t 241 (439)
T KOG1498|consen 168 ---SEKVAFILEQMRLCLLRLDYVRAQIISKKI---NKKFFEKPDVQELKLKYYELMIRLGLHDRAYLNVCRSYRAIYDT 241 (439)
T ss_pred ---HHHHHHHHHHHHHHHHhhhHHHHHHHHHHh---hHHhcCCccHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhcc
Confidence 666888888999999999998876554443 333333 33221 11222222355788888887776666544
Q ss_pred hhhhCCh-hHHHHhHHHHHHHHh
Q 023037 252 YDEAGNQ-RRIQCLKYLVLANML 273 (288)
Q Consensus 252 y~e~g~~-~a~~~LKY~~L~~il 273 (288)
=.-.-|| +.+.+|+=.+.-.+|
T Consensus 242 ~~vk~d~~kw~~vL~~iv~f~~L 264 (439)
T KOG1498|consen 242 GNVKEDPEKWIEVLRSIVSFCVL 264 (439)
T ss_pred cccccChhhhhhhhhhheeEEee
Confidence 3333344 345555554443343
No 132
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=94.41 E-value=0.21 Score=35.59 Aligned_cols=60 Identities=15% Similarity=0.248 Sum_probs=50.9
Q ss_pred HHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhc
Q 023037 142 LCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKS 213 (288)
Q Consensus 142 L~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE~~~y~~~~n~~kak~~y~~A~~~a~ 213 (288)
|..+|+..++|+++...++.+.+.-+ ++. ..+..-+.+|..+|++.+|...+..+++...
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~~p-----~~~-------~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALELDP-----DDP-------ELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHhCc-----ccc-------hhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 46789999999999999999999822 333 6777889999999999999999999987665
No 133
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=94.39 E-value=0.11 Score=36.54 Aligned_cols=57 Identities=16% Similarity=0.292 Sum_probs=45.8
Q ss_pred HhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhcc
Q 023037 146 WFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSA 214 (288)
Q Consensus 146 yl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE~~~y~~~~n~~kak~~y~~A~~~a~~ 214 (288)
+++.|+|++|..+++++....+ ++. ++...-.++|...|++.+|++.+.++......
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p-----~~~-------~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~ 57 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNP-----DNP-------EARLLLAQCYLKQGQYDEAEELLERLLKQDPD 57 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTT-----TSH-------HHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT
T ss_pred ChhccCHHHHHHHHHHHHHHCC-----CCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 4688999999999999988832 233 77888899999999999999999887665544
No 134
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=94.38 E-value=1.8 Score=36.88 Aligned_cols=111 Identities=7% Similarity=0.010 Sum_probs=86.0
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHHHHhh
Q 023037 51 EWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAK 130 (288)
Q Consensus 51 ~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~~~~~~~~~~~~~~~~~~~~l~~i~~a~ 130 (288)
+..-..++.++-.+...|++++|...|+-+..+= +.
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~------------------------------------------- 67 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYD-AW------------------------------------------- 67 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cc-------------------------------------------
Confidence 3356788999999999999999999987765544 21
Q ss_pred hhhhhHHhhhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHh
Q 023037 131 NERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALA 210 (288)
Q Consensus 131 ner~~f~~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE~~~y~~~~n~~kak~~y~~A~~ 210 (288)
+-+ =-.+||-.+-.+|+|.+|.......-.+-. ||. +.+..=++.|..+||.+.|+.++..|..
T Consensus 68 ~~~----y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-----ddp-------~~~~~ag~c~L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 68 SFD----YWFRLGECCQAQKHWGEAIYAYGRAAQIKI-----DAP-------QAPWAAAECYLACDNVCYAIKALKAVVR 131 (157)
T ss_pred cHH----HHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-----CCc-------hHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 111 235788888999999999999998887732 666 7788888999999999999999999988
Q ss_pred hhccCCC-hhHH
Q 023037 211 IKSAIPH-PRIM 221 (288)
Q Consensus 211 ~a~~I~~-p~i~ 221 (288)
.....+. ..+.
T Consensus 132 ~~~~~~~~~~l~ 143 (157)
T PRK15363 132 ICGEVSEHQILR 143 (157)
T ss_pred HhccChhHHHHH
Confidence 8865544 4443
No 135
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=94.14 E-value=8.1 Score=39.89 Aligned_cols=226 Identities=18% Similarity=0.167 Sum_probs=128.8
Q ss_pred CCCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-hh------hhh-----HHH
Q 023037 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSA-VT------RNY-----SEK 95 (288)
Q Consensus 28 ~~~d~~~Al~~f~~ii~~~~e~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~-v~------ka~-----~~k 95 (288)
..+.+++|++.+...=. +.-.++.....-+.++.+.|+++++...|..++.-. |. +. ++. ..+
T Consensus 197 E~g~~q~ale~L~~~e~----~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn-Pdn~~Yy~~l~~~lgk~~d~~~ 271 (700)
T KOG1156|consen 197 EAGSLQKALEHLLDNEK----QIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN-PDNLDYYEGLEKALGKIKDMLE 271 (700)
T ss_pred HcccHHHHHHHHHhhhh----HHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC-chhHHHHHHHHHHHHHHhhhHH
Confidence 34445555555543311 122245555567889999999999999999888766 32 21 111 122
Q ss_pred HHHHHHHHhccC-CC-----------cchhhHHHHHHHHHHHHHHhhhhhhhHHhhhhHHHHHhhhcchhHHHHHHHHHH
Q 023037 96 CINNIMDFVSGS-AS-----------QNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELH 163 (288)
Q Consensus 96 ~i~~ild~~~~~-~~-----------~~~~~~~~~~~~~l~~i~~a~ner~~f~~~~kL~~lyl~~~~y~~~~~ll~elk 163 (288)
.++.++...+.- +. .+.+.....++.++. . .=.|..-.+-..+..+|-+...-.=+.+++.++.
T Consensus 272 ~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~---~-~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~ 347 (700)
T KOG1156|consen 272 ALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLR---P-LLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQ 347 (700)
T ss_pred HHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHH---H-HhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHH
Confidence 223333333321 00 000111111111111 0 0011111233345556655553333566777776
Q ss_pred HhccCCCC---Ccccc--ccchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhHHHHHHhhcchhhhhhccH
Q 023037 164 KSCQREDG---TDDQK--KGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQW 238 (288)
Q Consensus 164 k~~~~~~~---~dDk~--~~~~llEv~~lE~~~y~~~~n~~kak~~y~~A~~~a~~I~~p~i~a~I~~~~G~l~~~ekdy 238 (288)
..+...+. .||.. +-+-++=.+..-++-|-..|++++|.....- +|.|--.+-+..+.-+.|+.+-|+.
T Consensus 348 ~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~------AIdHTPTliEly~~KaRI~kH~G~l 421 (700)
T KOG1156|consen 348 HSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDL------AIDHTPTLIELYLVKARIFKHAGLL 421 (700)
T ss_pred hhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHH------HhccCchHHHHHHHHHHHHHhcCCh
Confidence 66554321 13322 2356677777778999999999999888765 5788334556778889999999999
Q ss_pred HHHHHHHHHHHhhhhhhCCh-hHH--HHhHHHHHHHH
Q 023037 239 ADAATDFFEAFKNYDEAGNQ-RRI--QCLKYLVLANM 272 (288)
Q Consensus 239 ~~A~syF~EaF~~y~e~g~~-~a~--~~LKY~~L~~i 272 (288)
.+|..-|-|| ++.+.+ |++ +|-||||.|+.
T Consensus 422 ~eAa~~l~ea----~elD~aDR~INsKcAKYmLrAn~ 454 (700)
T KOG1156|consen 422 DEAAAWLDEA----QELDTADRAINSKCAKYMLRANE 454 (700)
T ss_pred HHHHHHHHHH----HhccchhHHHHHHHHHHHHHccc
Confidence 9998877776 555543 444 69999999864
No 136
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=94.10 E-value=0.24 Score=35.31 Aligned_cols=53 Identities=21% Similarity=0.407 Sum_probs=45.5
Q ss_pred CCCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 023037 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (288)
Q Consensus 28 ~~~d~~~Al~~f~~ii~~~~e~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~ 84 (288)
..+++++|++.++.++..+|+. ...+...|.++.++|+++++.+.+++.+..-
T Consensus 7 ~~~~~~~A~~~~~~~l~~~p~~----~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 7 QQEDYEEALEVLERALELDPDD----PELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred hCCCHHHHHHHHHHHHHhCccc----chhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 4689999999999999998753 2345679999999999999999999998776
No 137
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.09 E-value=1.7 Score=42.66 Aligned_cols=210 Identities=15% Similarity=0.178 Sum_probs=135.5
Q ss_pred HHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhccCCCcch
Q 023037 33 EGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNF 112 (288)
Q Consensus 33 ~~Al~~f~~ii~~~~e~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~~~~~~~~~~ 112 (288)
..|+..+.+++....+..- ++++-..=++++.-.|+++++...-...+.. -+.+.-+-.||+.+-+.. .+.
T Consensus 149 anal~~~~~~~~s~s~~pa-c~~a~~lka~cl~~~~~~~~a~~ea~~ilkl----d~~n~~al~vrg~~~yy~----~~~ 219 (486)
T KOG0550|consen 149 ANALPTLEKLAPSHSREPA-CFKAKLLKAECLAFLGDYDEAQSEAIDILKL----DATNAEALYVRGLCLYYN----DNA 219 (486)
T ss_pred hhhhhhhhcccccccCCch-hhHHHHhhhhhhhhcccchhHHHHHHHHHhc----ccchhHHHHhcccccccc----cch
Confidence 4455555555554332222 5666667778999999999988755444333 344555555665444333 122
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhhH------HhhhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHH
Q 023037 113 SLLREFYQTTLKALEEAKNERLWF------KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYA 186 (288)
Q Consensus 113 ~~~~~~~~~~l~~i~~a~ner~~f------~~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~ 186 (288)
+.....+...+..=..+...+-.+ ...-.-|+-.+..|+|.++.+++.+...+.+ +.+ .-+.-+|.
T Consensus 220 ~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP-----~n~---~~naklY~ 291 (486)
T KOG0550|consen 220 DKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDP-----SNK---KTNAKLYG 291 (486)
T ss_pred HHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCc-----ccc---chhHHHHH
Confidence 233344443333222221111111 2333567888999999999999999999822 223 56678899
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhHHHHHHhhcchhhhhhccHHHHHHHHHHHHhhhhhh--CC--hhHHH
Q 023037 187 IEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEA--GN--QRRIQ 262 (288)
Q Consensus 187 lE~~~y~~~~n~~kak~~y~~A~~~a~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EaF~~y~e~--g~--~~a~~ 262 (288)
.-..+...+|+...|..-.+.|+.+..+ .|-|- +.-|.-|+.-++|..|-.||-.|.++=... +. .++..
T Consensus 292 nra~v~~rLgrl~eaisdc~~Al~iD~s----yikal--l~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~ 365 (486)
T KOG0550|consen 292 NRALVNIRLGRLREAISDCNEALKIDSS----YIKAL--LRRANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQL 365 (486)
T ss_pred HhHhhhcccCCchhhhhhhhhhhhcCHH----HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHH
Confidence 9999999999999999999888877654 33333 345788999999999999999998865542 22 25666
Q ss_pred HhH
Q 023037 263 CLK 265 (288)
Q Consensus 263 ~LK 265 (288)
.||
T Consensus 366 aLk 368 (486)
T KOG0550|consen 366 ALK 368 (486)
T ss_pred HHH
Confidence 777
No 138
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=93.96 E-value=0.64 Score=39.64 Aligned_cols=94 Identities=13% Similarity=0.110 Sum_probs=71.1
Q ss_pred hhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCC-h
Q 023037 140 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH-P 218 (288)
Q Consensus 140 ~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE~~~y~~~~n~~kak~~y~~A~~~a~~I~~-p 218 (288)
..+|..+++.|+|++|.++.+-+-.+ | ..-.+-+.--+-++..+|++.+|..+|..|..+.-.=|. |
T Consensus 39 Y~~A~~ly~~G~l~~A~~~f~~L~~~-------D-----p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~ 106 (157)
T PRK15363 39 YRYAMQLMEVKEFAGAARLFQLLTIY-------D-----AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAP 106 (157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh-------C-----cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHH
Confidence 35788899999999999999999888 2 222356666788999999999999999999998865555 3
Q ss_pred hHHHHHHhhcchhhhhhccHHHHHHHHHHHHhhh
Q 023037 219 RIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (288)
Q Consensus 219 ~i~a~I~~~~G~l~~~ekdy~~A~syF~EaF~~y 252 (288)
.-.|+ .++.-||-..|..-|..+...-
T Consensus 107 ~~ag~-------c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 107 WAAAE-------CYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHH-------HHHHcCCHHHHHHHHHHHHHHh
Confidence 44444 4555566677777777666655
No 139
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.96 E-value=0.85 Score=43.62 Aligned_cols=160 Identities=18% Similarity=0.129 Sum_probs=113.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhhh-hhhhHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHHHHhhhhhhhH
Q 023037 58 KQTVKLYYRLGKYKEMMDAYREMLTYIKSAV-TRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWF 136 (288)
Q Consensus 58 ~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v-~ka~~~k~i~~ild~~~~~~~~~~~~~~~~~~~~l~~i~~a~ner~~f 136 (288)
.|+|+.|.+.|.+.++-..++++++-+ +.+ +=...+|..++ +. .+......|. +- -+..-|
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~-~~~dTfllLskvY~r----id-----QP~~AL~~~~---~g-----ld~fP~ 288 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQF-PHPDTFLLLSKVYQR----ID-----QPERALLVIG---EG-----LDSFPF 288 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcC-CchhHHHHHHHHHHH----hc-----cHHHHHHHHh---hh-----hhcCCc
Confidence 489999999999999999999999887 543 33444444443 21 1112222222 21 233344
Q ss_pred --HhhhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhcc
Q 023037 137 --KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSA 214 (288)
Q Consensus 137 --~~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE~~~y~~~~n~~kak~~y~~A~~~a~~ 214 (288)
..-+-.|+++-..++++++.++++++.+. + ..-+|.++...--|+--+|...|...|+..+.. +
T Consensus 289 ~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~-------~-----~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm--G 354 (478)
T KOG1129|consen 289 DVTYLLGQARIHEAMEQQEDALQLYKLVLKL-------H-----PINVEAIACIAVGYFYDNNPEMALRYYRRILQM--G 354 (478)
T ss_pred hhhhhhhhHHHHHHHHhHHHHHHHHHHHHhc-------C-----CccceeeeeeeeccccCCChHHHHHHHHHHHHh--c
Confidence 44567889999999999999999999998 2 223577777777788888888899999887654 6
Q ss_pred CCChhHHHHHHhhcchhhhhhccHHHHHHHHHHHHhhhh
Q 023037 215 IPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYD 253 (288)
Q Consensus 215 I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EaF~~y~ 253 (288)
++.|.+-..|-+|. +.-++|+-+..-|-.|.-...
T Consensus 355 ~~speLf~NigLCC----~yaqQ~D~~L~sf~RAlstat 389 (478)
T KOG1129|consen 355 AQSPELFCNIGLCC----LYAQQIDLVLPSFQRALSTAT 389 (478)
T ss_pred CCChHHHhhHHHHH----HhhcchhhhHHHHHHHHhhcc
Confidence 77888888887764 667777888888877765543
No 140
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=93.77 E-value=2.6 Score=45.28 Aligned_cols=29 Identities=14% Similarity=0.188 Sum_probs=20.0
Q ss_pred HhhhhHHHHHhhhcchhHHHHHHHHHHHh
Q 023037 137 KTNLKLCKIWFDMGEYGRMSKILKELHKS 165 (288)
Q Consensus 137 ~~~~kL~~lyl~~~~y~~~~~ll~elkk~ 165 (288)
.+-.-|-.-|.+.++|+++..+++.+.++
T Consensus 224 ~~~~~l~~~y~~~~~~~~~i~iLK~iL~~ 252 (906)
T PRK14720 224 GLLEDLYEPYKALEDWDEVIYILKKILEH 252 (906)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHhc
Confidence 44444556677777777777777777777
No 141
>COG5600 Transcription-associated recombination protein [DNA replication, recombination, and repair]
Probab=93.73 E-value=0.33 Score=46.76 Aligned_cols=129 Identities=14% Similarity=0.154 Sum_probs=93.4
Q ss_pred hhcchhHHHHHHHHHHHhccCCCCC-ccccccchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCh----hHHH
Q 023037 148 DMGEYGRMSKILKELHKSCQREDGT-DDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP----RIMG 222 (288)
Q Consensus 148 ~~~~y~~~~~ll~elkk~~~~~~~~-dDk~~~~~llEv~~lE~~~y~~~~n~~kak~~y~~A~~~a~~I~~p----~i~a 222 (288)
++....++..++......|-++.+. -...|+..+.-+--++-++|+++++..-....+... ...+.--+| .-+-
T Consensus 142 ~~d~l~~~sr~l~R~Fn~il~dR~p~ln~skk~g~y~iaNlL~~iY~Rl~~~~l~~n~lka~-~~vs~~Di~~~~~sq~v 220 (413)
T COG5600 142 NQDNLSKISRLLTRMFNSILNDRSPALNPSKKVGLYYIANLLFQIYLRLGRFKLCENFLKAS-KEVSMPDISEYQKSQVV 220 (413)
T ss_pred hHhhHHHHHHHHHHHHHHhcCCcCccCChhhHHHHHHHHHHHHHHHHHhccHHHHHHHHHhc-ccccccccchhhhccee
Confidence 3455667899999999998876543 224556888888999999999999988776665544 333322223 3344
Q ss_pred HHHhhcchhhhhhccHHHHHHHHHHHHhhhhhhCChhHHHHhHHHHHHHHhcCCC
Q 023037 223 IIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLANMLMESE 277 (288)
Q Consensus 223 ~I~~~~G~l~~~ekdy~~A~syF~EaF~~y~e~g~~~a~~~LKY~~L~~il~~~~ 277 (288)
+-+---|+.|+.+.|+..|+..|-|||-.-...-..+....+-||+-..++.+--
T Consensus 221 ~f~YYLG~~~l~~en~heA~~~L~~aFl~c~~l~~~n~~rIl~~~ipt~Llv~~~ 275 (413)
T COG5600 221 VFHYYLGIYYLLNENFHEAFLHLNEAFLQCPWLITRNRKRILPYYIPTSLLVNKF 275 (413)
T ss_pred ehhhHHHHHHHHHHhHHHHHHHHHHHHHhChhhhhcchheehhHHhhHHHHhCCC
Confidence 5567789999999999999999999997665432334566778999888887543
No 142
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.66 E-value=3.6 Score=41.94 Aligned_cols=195 Identities=16% Similarity=0.188 Sum_probs=117.8
Q ss_pred cccCCCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHh
Q 023037 25 KGLVETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFV 104 (288)
Q Consensus 25 k~~~~~d~~~Al~~f~~ii~~~~e~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~~ 104 (288)
+...++++++|++.-.+|+...++. ..+++.-+..+.+.++|++++..++.-.......+- -.+|+..-
T Consensus 21 ~~~~~~e~e~a~k~~~Kil~~~pdd----~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~--~fEKAYc~----- 89 (652)
T KOG2376|consen 21 RHGKNGEYEEAVKTANKILSIVPDD----EDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSF--FFEKAYCE----- 89 (652)
T ss_pred HhccchHHHHHHHHHHHHHhcCCCc----HhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchh--hHHHHHHH-----
Confidence 3456889999999999999875431 345566667778889999999666654432211110 02333321
Q ss_pred ccCCCcchhhHHHHHHHHHHHHHHhhhhhhhHHhhhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchH---
Q 023037 105 SGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQL--- 181 (288)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~l~~i~~a~ner~~f~~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~l--- 181 (288)
......+.++++++ +-++..-++..=.|.+++..|+|++|..+++.|-+.-.... |...+-+++
T Consensus 90 ---------Yrlnk~Dealk~~~--~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~--d~~~r~nl~a~~ 156 (652)
T KOG2376|consen 90 ---------YRLNKLDEALKTLK--GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQ--DEERRANLLAVA 156 (652)
T ss_pred ---------HHcccHHHHHHHHh--cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchH--HHHHHHHHHHHH
Confidence 11111233444444 23344444555567888899999999999999955522111 111111111
Q ss_pred ------------------HHHHHHHHHHHHhhcCHHHHHHHHHHH-----HhhhccCCC-hhHHHHHHhhcchhhh---h
Q 023037 182 ------------------LEVYAIEIQMYTETKNNKKLKQLYQKA-----LAIKSAIPH-PRIMGIIRECGGKMHM---A 234 (288)
Q Consensus 182 ------------------lEv~~lE~~~y~~~~n~~kak~~y~~A-----~~~a~~I~~-p~i~a~I~~~~G~l~~---~ 234 (288)
-|.+..+.=++...++|++|-+++.+| .+....=.+ -.++.+|+.|.+.+.+ .
T Consensus 157 a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~ 236 (652)
T KOG2376|consen 157 AALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQL 236 (652)
T ss_pred HhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHH
Confidence 134455556677889999999999999 344454444 6777777777776654 5
Q ss_pred hccHHHHHH
Q 023037 235 ERQWADAAT 243 (288)
Q Consensus 235 ekdy~~A~s 243 (288)
.|+=.+|.+
T Consensus 237 ~Gqt~ea~~ 245 (652)
T KOG2376|consen 237 QGQTAEASS 245 (652)
T ss_pred hcchHHHHH
Confidence 666666655
No 143
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=93.55 E-value=2.6 Score=35.48 Aligned_cols=115 Identities=15% Similarity=0.103 Sum_probs=93.6
Q ss_pred HHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhHH
Q 023037 142 LCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIM 221 (288)
Q Consensus 142 L~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE~~~y~~~~n~~kak~~y~~A~~~a~~I~~p~i~ 221 (288)
.+...-+.|+.+.+.++..+...+|++-. -+|-.-.|.|.-+|+..+|..-+.+|+..++.- -+.-
T Consensus 49 ~~valaE~g~Ld~AlE~F~qal~l~P~ra------------SayNNRAQa~RLq~~~e~ALdDLn~AleLag~~--trta 114 (175)
T KOG4555|consen 49 KAIALAEAGDLDGALELFGQALCLAPERA------------SAYNNRAQALRLQGDDEEALDDLNKALELAGDQ--TRTA 114 (175)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhcccch------------HhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc--chHH
Confidence 35566789999999999999999986532 467788899999999999999999999999876 4555
Q ss_pred HHHHhhcchhhhhhccHHHHHHHHHHHHhhhhhhCChhHHHHh----HHHHHHHHhc
Q 023037 222 GIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCL----KYLVLANMLM 274 (288)
Q Consensus 222 a~I~~~~G~l~~~ekdy~~A~syF~EaF~~y~e~g~~~a~~~L----KY~~L~~il~ 274 (288)
..-..+-|.+|-..++-+.|..+|--| -+.|++=+..-| .|-.||+-|.
T Consensus 115 cqa~vQRg~lyRl~g~dd~AR~DFe~A----A~LGS~FAr~QLV~lNPYAAlCN~ML 167 (175)
T KOG4555|consen 115 CQAFVQRGLLYRLLGNDDAARADFEAA----AQLGSKFAREQLVELNPYAALCNQML 167 (175)
T ss_pred HHHHHHHHHHHHHhCchHHHHHhHHHH----HHhCCHHHHHHHHhcChHHHHHHHHH
Confidence 556678899999999999999997665 678998444333 7999999876
No 144
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=93.54 E-value=0.22 Score=30.01 Aligned_cols=30 Identities=27% Similarity=0.493 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 023037 55 KALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (288)
Q Consensus 55 kal~~l~~l~~~~g~~~~~l~~~~~~l~~~ 84 (288)
+++.++|.+|..+|+++++++++++.+.+-
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 578899999999999999999999998765
No 145
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=93.50 E-value=1.9 Score=46.24 Aligned_cols=157 Identities=17% Similarity=0.167 Sum_probs=94.8
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHHHHhh
Q 023037 51 EWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAK 130 (288)
Q Consensus 51 ~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~~~~~~~~~~~~~~~~~~~~l~~i~~a~ 130 (288)
...+.+..+|+.+|..+|+++++.+++...+.+. +.-...+.-.++ |- ++ .+ . .+
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~---l~-~q--~~----~--------------~~ 82 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGI---LS-LS--RR----P--------------LN 82 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHH---HH-Hh--hc----c--------------hh
Confidence 4569999999999999999999999999888877 543222222222 00 00 00 0 00
Q ss_pred hhhhhHHhhhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHh
Q 023037 131 NERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALA 210 (288)
Q Consensus 131 ner~~f~~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE~~~y~~~~n~~kak~~y~~A~~ 210 (288)
+--+ .+++.+.-...++.-+.-+.+.+... + +.+ +.+.--+.+|-.+|+..++.++|.+++.
T Consensus 83 ~~~l-----v~~l~~~~~~~~~~~ve~~~~~i~~~---~---~~k-------~Al~~LA~~Ydk~g~~~ka~~~yer~L~ 144 (906)
T PRK14720 83 DSNL-----LNLIDSFSQNLKWAIVEHICDKILLY---G---ENK-------LALRTLAEAYAKLNENKKLKGVWERLVK 144 (906)
T ss_pred hhhh-----hhhhhhcccccchhHHHHHHHHHHhh---h---hhh-------HHHHHHHHHHHHcCChHHHHHHHHHHHh
Confidence 0000 03333333333333333333333332 0 111 2344446677788999999999999999
Q ss_pred hhccCCC-hhHHHHHHhhcchhhhhhccHHHHHHHHHHHHhhhhhhCCh
Q 023037 211 IKSAIPH-PRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQ 258 (288)
Q Consensus 211 ~a~~I~~-p~i~a~I~~~~G~l~~~ekdy~~A~syF~EaF~~y~e~g~~ 258 (288)
.. |+ |.++-.+ |-.++.+ |.++|..+...|.+-|-.-..+
T Consensus 145 ~D---~~n~~aLNn~----AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~ 185 (906)
T PRK14720 145 AD---RDNPEIVKKL----ATSYEEE-DKEKAITYLKKAIYRFIKKKQY 185 (906)
T ss_pred cC---cccHHHHHHH----HHHHHHh-hHHHHHHHHHHHHHHHHhhhcc
Confidence 98 44 6555443 4456667 9999999999998887654433
No 146
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.50 E-value=0.22 Score=30.27 Aligned_cols=30 Identities=27% Similarity=0.523 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 023037 55 KALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (288)
Q Consensus 55 kal~~l~~l~~~~g~~~~~l~~~~~~l~~~ 84 (288)
+++.++|.+|..+|++++++++|++.+.+-
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 678999999999999999999999998765
No 147
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=93.37 E-value=0.23 Score=30.07 Aligned_cols=30 Identities=27% Similarity=0.485 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 023037 55 KALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (288)
Q Consensus 55 kal~~l~~l~~~~g~~~~~l~~~~~~l~~~ 84 (288)
+++..+|.+|.+.|+++++.++|++.+.+-
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 578899999999999999999999998875
No 148
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.35 E-value=3.9 Score=37.73 Aligned_cols=175 Identities=14% Similarity=0.161 Sum_probs=113.0
Q ss_pred CCHHHHHHHHHHhhcCCccch--hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhccC
Q 023037 30 TDPEGALAGFAEVVAMEPEKA--EWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGS 107 (288)
Q Consensus 30 ~d~~~Al~~f~~ii~~~~e~~--~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~~~~~ 107 (288)
.+|++|-..+.+.++--+.+. =--.|++.+.+-+......+.++.++|++....--...+..-++-.+-+--+.+
T Consensus 45 k~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~l--- 121 (308)
T KOG1585|consen 45 KKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKAL--- 121 (308)
T ss_pred ccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHh---
Confidence 355666666666553221111 124788999999999999999999999887665424333322333332222222
Q ss_pred CCcchhhHHHHHHHHHHHHHHhhhhhhhHHhhhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHH
Q 023037 108 ASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAI 187 (288)
Q Consensus 108 ~~~~~~~~~~~~~~~l~~i~~a~ner~~f~~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~l 187 (288)
.+.+++...++|..++..++.....+.-|...-+.+++|...+.|.++..-+.+...+-...... ..---.+.-
T Consensus 122 env~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y------~~~~k~~va 195 (308)
T KOG1585|consen 122 ENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAY------NSQCKAYVA 195 (308)
T ss_pred hcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhc------ccHHHHHHH
Confidence 22556799999999999999888888888999999999999999999765555544441111000 111223455
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHhhhc
Q 023037 188 EIQMYTETKNNKKLKQLYQKALAIKS 213 (288)
Q Consensus 188 E~~~y~~~~n~~kak~~y~~A~~~a~ 213 (288)
.+-+|...++|..++..|+.+-.+.+
T Consensus 196 ~ilv~L~~~Dyv~aekc~r~~~qip~ 221 (308)
T KOG1585|consen 196 AILVYLYAHDYVQAEKCYRDCSQIPA 221 (308)
T ss_pred HHHHHhhHHHHHHHHHHhcchhcCcc
Confidence 56667777888888888877654433
No 149
>KOG2688 consensus Transcription-associated recombination protein - Thp1p [Cell cycle control, cell division, chromosome partitioning]
Probab=93.32 E-value=0.32 Score=47.23 Aligned_cols=133 Identities=18% Similarity=0.192 Sum_probs=93.6
Q ss_pred hHHHHHHHHHHHhccCCCCC-ccccccchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCC-h-hHHHHHHhhcc
Q 023037 153 GRMSKILKELHKSCQREDGT-DDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH-P-RIMGIIRECGG 229 (288)
Q Consensus 153 ~~~~~ll~elkk~~~~~~~~-dDk~~~~~llEv~~lE~~~y~~~~n~~kak~~y~~A~~~a~~I~~-p-~i~a~I~~~~G 229 (288)
..+...+-..-..|-..... ....|+...+++-...-++|+.+++..-.+...+.-....+.+.. | .-+-+-.---|
T Consensus 133 e~~s~~i~~~f~~cl~d~~~~~~~~kk~~~~~i~n~lf~Iyfri~~~~L~k~l~ra~~~~~~~~~~~~l~~~v~y~YylG 212 (394)
T KOG2688|consen 133 EAASRTISRLFSSCLSDRRADLEESKKVAMLYIVNQLFQIYFRIEKLLLCKNLIRAFDQSGSDISDFPLAQLVVYHYYLG 212 (394)
T ss_pred HHHHHHHHHHHHHHhCccccccccchhhHHHHHHHHHHHHHHHHhhHHHhHHHHHHhhccccchhhcccccceeeeeeee
Confidence 34666777777777654221 223556888999999999999999988777776665555333333 2 11222233456
Q ss_pred hhhhhhccHHHHHHHHHHHHhhhhhhCChhHHHHhHHHHHHHHhcCC-CCCCCCCCC
Q 023037 230 KMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLANMLMES-EVNPFDGQE 285 (288)
Q Consensus 230 ~l~~~ekdy~~A~syF~EaF~~y~e~g~~~a~~~LKY~~L~~il~~~-~~dpF~s~E 285 (288)
..+|.+.||..|+.++-+||.+--..--.+....|.|++=+.|+.+. |..+|=+++
T Consensus 213 r~a~~~~d~~~A~~~L~~af~~cp~~~~~n~~~iliylip~~~llg~~Pt~~lL~~~ 269 (394)
T KOG2688|consen 213 RYAMFESDFLNAFLQLNEAFRLCPDLLLKNKRLILIYLIPTGLLLGRIPTKELLDFY 269 (394)
T ss_pred eehhhhhhHHHHHHHHHHHHHhCcHHHHhhhhhHHHHHhHHHHHhccCcchhhHhHh
Confidence 99999999999999999999976543334667789999999999988 666665444
No 150
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.14 E-value=2.7 Score=38.86 Aligned_cols=142 Identities=20% Similarity=0.324 Sum_probs=82.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHHHH-hhhhhhhHHhh
Q 023037 61 VKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEE-AKNERLWFKTN 139 (288)
Q Consensus 61 ~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~~~~~~~~~~~~~~~~~~~~l~~i~~-a~ner~~f~~~ 139 (288)
+..+-..|++++|.++|..++.-= |.-+-.+. |++. +...++.+.+.+... .++++. .++.-.|
T Consensus 93 am~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~K----RKlA--ilka~GK~l~aIk~l----n~YL~~F~~D~EAW---- 157 (289)
T KOG3060|consen 93 AMLLEATGNYKEAIEYYESLLEDD-PTDTVIRK----RKLA--ILKAQGKNLEAIKEL----NEYLDKFMNDQEAW---- 157 (289)
T ss_pred HHHHHHhhchhhHHHHHHHHhccC-cchhHHHH----HHHH--HHHHcCCcHHHHHHH----HHHHHHhcCcHHHH----
Confidence 456778899999999999998765 32111111 2222 222233333233222 222221 1223444
Q ss_pred hhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHHHHHHHh-hcCHHHHHHHHHHHHhhhccCCCh
Q 023037 140 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTE-TKNNKKLKQLYQKALAIKSAIPHP 218 (288)
Q Consensus 140 ~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE~~~y~~-~~n~~kak~~y~~A~~~a~~I~~p 218 (288)
.-|+.+|+..|+|.+|-=++.|+.-. +| - ..+.---+.|...+.. ..|+.-++.+|.+|+++.. ...
T Consensus 158 ~eLaeiY~~~~~f~kA~fClEE~ll~--~P-----~---n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~--~~~ 225 (289)
T KOG3060|consen 158 HELAEIYLSEGDFEKAAFCLEELLLI--QP-----F---NPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP--KNL 225 (289)
T ss_pred HHHHHHHHhHhHHHHHHHHHHHHHHc--CC-----C---cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh--HhH
Confidence 36899999999999999999999766 22 2 3333333333333332 3588999999999999887 223
Q ss_pred hHHHHHHhhcc
Q 023037 219 RIMGIIRECGG 229 (288)
Q Consensus 219 ~i~a~I~~~~G 229 (288)
+-+--|.+|+-
T Consensus 226 ral~GI~lc~~ 236 (289)
T KOG3060|consen 226 RALFGIYLCGS 236 (289)
T ss_pred HHHHHHHHHHH
Confidence 33333444443
No 151
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=93.13 E-value=13 Score=39.04 Aligned_cols=189 Identities=10% Similarity=0.005 Sum_probs=123.1
Q ss_pred HHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhccCCCcchhhH
Q 023037 36 LAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLL 115 (288)
Q Consensus 36 l~~f~~ii~~~~e~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~~~~~~~~~~~~~ 115 (288)
+.....++...-+..+-+-.-+.|+-.+....|......+-+-+++.+.+.- +. ..+.++.+-+..... ...+..
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~La~i~~~~--g~~~ea 105 (694)
T PRK15179 31 LDLLEAALAEPGESEEAGRELLQQARQVLERHAAVHKPAAALPELLDYVRRY-PH--TELFQVLVARALEAA--HRSDEG 105 (694)
T ss_pred HhHHHHHhcCcccchhHHHHHHHHHHHHHHHhhhhcchHhhHHHHHHHHHhc-cc--cHHHHHHHHHHHHHc--CCcHHH
Confidence 4444444443212223334556677777777777777777777776666322 21 244555433322211 122344
Q ss_pred HHHHHHHHHHHHHhhhhhhhHHhhhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHHHHHHHhh
Q 023037 116 REFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTET 195 (288)
Q Consensus 116 ~~~~~~~l~~i~~a~ner~~f~~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE~~~y~~~ 195 (288)
...++.+++. + --....-+.++.++.+.+++++|...++.+...-+ |. .+.+.+.......+
T Consensus 106 ~~~l~~~~~~---~---Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p-----~~-------~~~~~~~a~~l~~~ 167 (694)
T PRK15179 106 LAVWRGIHQR---F---PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGS-----SS-------AREILLEAKSWDEI 167 (694)
T ss_pred HHHHHHHHhh---C---CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCC-----CC-------HHHHHHHHHHHHHh
Confidence 4455544442 1 11124556889999999999999999998888722 22 37888899999999
Q ss_pred cCHHHHHHHHHHHHhhhccCCChhHHHHHHhhcchhhhhhccHHHHHHHHHHHHhhhh
Q 023037 196 KNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYD 253 (288)
Q Consensus 196 ~n~~kak~~y~~A~~~a~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EaF~~y~ 253 (288)
|.+.+|-++|.+++. .+| -.+....--|..++..|+.+.|..-|-.|++.+.
T Consensus 168 g~~~~A~~~y~~~~~-----~~p-~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~ 219 (694)
T PRK15179 168 GQSEQADACFERLSR-----QHP-EFENGYVGWAQSLTRRGALWRARDVLQAGLDAIG 219 (694)
T ss_pred cchHHHHHHHHHHHh-----cCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC
Confidence 999999999999987 233 2233445568999999999999999999998774
No 152
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=92.88 E-value=0.17 Score=30.28 Aligned_cols=29 Identities=28% Similarity=0.685 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 023037 56 ALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (288)
Q Consensus 56 al~~l~~l~~~~g~~~~~l~~~~~~l~~~ 84 (288)
|+.++|.+|.+.|+++++.+++++++.-.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 78899999999999999999999988754
No 153
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.82 E-value=6.7 Score=38.47 Aligned_cols=126 Identities=14% Similarity=0.154 Sum_probs=91.0
Q ss_pred HhhhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhcc-C
Q 023037 137 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSA-I 215 (288)
Q Consensus 137 ~~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE~~~y~~~~n~~kak~~y~~A~~~a~~-I 215 (288)
+..--++.-|++-|+.+.|.+.+..++.+|... -..+..+..=+++---.+|+.+.-..-.+|....-+ .
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~---------khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~ 221 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSA---------KHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANE 221 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcch---------HHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhh
Confidence 445567888999999999999999999999864 556677777777777889988877766666555211 1
Q ss_pred CC-hhHHHHHHhhcchhhhhhccHHHHHHHHHHHH-hhhh--hhCChhHHHHhHHHHHHHHh
Q 023037 216 PH-PRIMGIIRECGGKMHMAERQWADAATDFFEAF-KNYD--EAGNQRRIQCLKYLVLANML 273 (288)
Q Consensus 216 ~~-p~i~a~I~~~~G~l~~~ekdy~~A~syF~EaF-~~y~--e~g~~~a~~~LKY~~L~~il 273 (288)
.- +.+-+.++-..|..|...|+|+.|..||.-+- ...| +.=+|.-+.+ |-.||-|-
T Consensus 222 ~~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~~~~~~d~~~ivtpsdv~i--YggLcALA 281 (466)
T KOG0686|consen 222 NLAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLAEFDHCDYPEIVTPSDVAI--YGGLCALA 281 (466)
T ss_pred hHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhCCCCccCccceecchhhHH--HHhhHhhc
Confidence 11 33334488899999999999999999998762 2222 3334555544 88888763
No 154
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=92.80 E-value=0.32 Score=30.46 Aligned_cols=34 Identities=24% Similarity=0.367 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q 023037 54 FKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSA 87 (288)
Q Consensus 54 ~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~ 87 (288)
..++.+|+.+|..+|+++++..++++.+...+..
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 35 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIRERL 35 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHH
Confidence 4688999999999999999999999999888443
No 155
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=92.77 E-value=13 Score=38.12 Aligned_cols=223 Identities=9% Similarity=0.108 Sum_probs=128.4
Q ss_pred CCCHHHHHHHHHHhhcCCc--cchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHH-HHHhc
Q 023037 29 ETDPEGALAGFAEVVAMEP--EKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNI-MDFVS 105 (288)
Q Consensus 29 ~~d~~~Al~~f~~ii~~~~--e~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~i-ld~~~ 105 (288)
++|++.|...+.+.+.... +-.+.+|.+-.-++++|.+.|... ++..+.+.+...+. ..-..-.-..+=+ +...-
T Consensus 73 T~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~-~~~~~w~~~frll~~~l~~ 150 (608)
T PF10345_consen 73 TENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSET-YGHSAWYYAFRLLKIQLAL 150 (608)
T ss_pred cCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhc-cCchhHHHHHHHHHHHHHH
Confidence 6789999999999877643 456778999999999999999887 99999998888833 2222222222221 11111
Q ss_pred cCCCcchhhHHHHHHHHHHHHHHhhhhhhhHHhhhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchH-HHH
Q 023037 106 GSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQL-LEV 184 (288)
Q Consensus 106 ~~~~~~~~~~~~~~~~~l~~i~~a~ner~~f~~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~l-lEv 184 (288)
.. .+.......++.....-...++.....-..+=.+.+++..+...++.+.+++......... .++......| +=.
T Consensus 151 ~~--~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q-~~~~~~~~qL~~~~ 227 (608)
T PF10345_consen 151 QH--KDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQ-LDPSVHIPQLKALF 227 (608)
T ss_pred hc--ccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcc-cCCCCCcHHHHHHH
Confidence 11 1222333333333332221222222224444556666777777777777777744433321 1222111222 333
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHH-------Hhhh---c-----cCC---------------------ChhHHHHHHhhc
Q 023037 185 YAIEIQMYTETKNNKKLKQLYQKA-------LAIK---S-----AIP---------------------HPRIMGIIRECG 228 (288)
Q Consensus 185 ~~lE~~~y~~~~n~~kak~~y~~A-------~~~a---~-----~I~---------------------~p~i~a~I~~~~ 228 (288)
..++.=.+...++++-++..+..- .+.. + .|+ -..+.+.+...+
T Consensus 228 lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS 307 (608)
T PF10345_consen 228 LLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLS 307 (608)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHH
Confidence 344444444445644444333322 2211 0 011 124678889999
Q ss_pred chhhhhhccHHHHHHHHHHHHhhhhhhC
Q 023037 229 GKMHMAERQWADAATDFFEAFKNYDEAG 256 (288)
Q Consensus 229 G~l~~~ekdy~~A~syF~EaF~~y~e~g 256 (288)
|...+..+..+.|..||-++++.-+...
T Consensus 308 ~l~~~~~~~~~ks~k~~~k~l~~i~~~~ 335 (608)
T PF10345_consen 308 GLHNLYKGSMDKSEKFLEKALKQIEKLK 335 (608)
T ss_pred HHHHhhccCchHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999888754
No 156
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=92.71 E-value=0.54 Score=38.19 Aligned_cols=64 Identities=20% Similarity=0.124 Sum_probs=50.3
Q ss_pred HHHhhccc-CCCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 023037 20 CSILEKGL-VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (288)
Q Consensus 20 ~y~~ak~~-~~~d~~~Al~~f~~ii~~~~e~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~ 84 (288)
.|..|-.. ..+++++|+..|++.+....+. .-...++.+++..|...|++++++.++++.+.-+
T Consensus 4 ~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~-~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~ 68 (120)
T PF12688_consen 4 LYELAWAHDSLGREEEAIPLYRRALAAGLSG-ADRRRALIQLASTLRNLGRYDEALALLEEALEEF 68 (120)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc-hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 34445444 3678999999999999864332 2346899999999999999999999998886654
No 157
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=92.47 E-value=5.4 Score=41.48 Aligned_cols=106 Identities=13% Similarity=0.125 Sum_probs=81.5
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhHHhhhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHHHHHHH
Q 023037 114 LLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYT 193 (288)
Q Consensus 114 ~~~~~~~~~l~~i~~a~ner~~f~~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE~~~y~ 193 (288)
+....++.+...+..+....-+-|+.+|-+++.-..++.+++..++.+-.+..+.- + -+|+.-+|++.
T Consensus 629 ~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f----~--------Kl~lmlGQi~e 696 (913)
T KOG0495|consen 629 FENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDF----H--------KLWLMLGQIEE 696 (913)
T ss_pred hccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCch----H--------HHHHHHhHHHH
Confidence 33455677777777776666666778889999999999999999999988885432 2 47888899999
Q ss_pred hhcCHHHHHHHHHHHH-hhhccCCChhHHHHHHhhcchh
Q 023037 194 ETKNNKKLKQLYQKAL-AIKSAIPHPRIMGIIRECGGKM 231 (288)
Q Consensus 194 ~~~n~~kak~~y~~A~-~~a~~I~~p~i~a~I~~~~G~l 231 (288)
..+|+..||.+|++-. .+.++||-=.+.+.++|--|.+
T Consensus 697 ~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~ 735 (913)
T KOG0495|consen 697 QMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQL 735 (913)
T ss_pred HHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcch
Confidence 9999999999998754 5555666556778888766644
No 158
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=92.41 E-value=1.6 Score=42.48 Aligned_cols=114 Identities=17% Similarity=0.212 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHHHHhhhhh
Q 023037 54 FKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNER 133 (288)
Q Consensus 54 ~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~~~~~~~~~~~~~~~~~~~~l~~i~~a~ner 133 (288)
..-.+.=|..|++.|+|..|..-|++.+.++ ..-. +.+ .+.. ....-
T Consensus 208 A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l-~~~~-----------------~~~--~ee~-------------~~~~~ 254 (397)
T KOG0543|consen 208 ADRKKERGNVLFKEGKFKLAKKRYERAVSFL-EYRR-----------------SFD--EEEQ-------------KKAEA 254 (397)
T ss_pred HHHHHHhhhHHHhhchHHHHHHHHHHHHHHh-hccc-----------------cCC--HHHH-------------HHHHH
Confidence 3445667889999999999999999999888 3210 000 0000 00111
Q ss_pred hhHHhhhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 023037 134 LWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (288)
Q Consensus 134 ~~f~~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE~~~y~~~~n~~kak~~y~~A~~~a 212 (288)
.-..+++||+-.|+..++|.+|......++.. |.. + +--..=.+++|..++++..|+..+.+|.++.
T Consensus 255 ~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~-------~~~---N--~KALyRrG~A~l~~~e~~~A~~df~ka~k~~ 321 (397)
T KOG0543|consen 255 LKLACHLNLAACYLKLKEYKEAIESCNKVLEL-------DPN---N--VKALYRRGQALLALGEYDLARDDFQKALKLE 321 (397)
T ss_pred HHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc-------CCC---c--hhHHHHHHHHHHhhccHHHHHHHHHHHHHhC
Confidence 22245666666666666666666666666655 222 0 0112234666666666666666666666554
No 159
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.96 E-value=0.89 Score=41.93 Aligned_cols=103 Identities=15% Similarity=0.133 Sum_probs=77.1
Q ss_pred HHHhhccc-CCCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Q 023037 20 CSILEKGL-VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCIN 98 (288)
Q Consensus 20 ~y~~ak~~-~~~d~~~Al~~f~~ii~~~~e~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~ 98 (288)
.|-.|-++ +++|+..|...|++-|+.-|. +...-.|.+-||+.++.+|+|+++...|.....-. +.-+|
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~-s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~-P~s~K-------- 213 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPN-STYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDY-PKSPK-------- 213 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CcccchhHHHHHHHHHhcccchHHHHHHHHHHHhC-CCCCC--------
Confidence 56667774 788999999999999987653 33356888999999999999999999886665433 22111
Q ss_pred HHHHHhccCCCcchhhHHHHHHHHHHHHHHhhhhhhhHHhhhhHHHHHhhhcchhHHHHHHHHHHHhccC
Q 023037 99 NIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQR 168 (288)
Q Consensus 99 ~ild~~~~~~~~~~~~~~~~~~~~l~~i~~a~ner~~f~~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~ 168 (288)
.| ...+|||....+.|+-++|...+++|-+--+.
T Consensus 214 --------Ap----------------------------dallKlg~~~~~l~~~d~A~atl~qv~k~YP~ 247 (262)
T COG1729 214 --------AP----------------------------DALLKLGVSLGRLGNTDEACATLQQVIKRYPG 247 (262)
T ss_pred --------Ch----------------------------HHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC
Confidence 11 23467888888899999988888888766443
No 160
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=91.72 E-value=1.5 Score=35.74 Aligned_cols=56 Identities=18% Similarity=0.243 Sum_probs=46.1
Q ss_pred CCCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q 023037 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSA 87 (288)
Q Consensus 28 ~~~d~~~Al~~f~~ii~~~~e~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~ 87 (288)
..+++++|++..+..+..+|- -+.+...++.+|...|++.++++.|.++...+...
T Consensus 74 ~~~~~~~a~~~~~~~l~~dP~----~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~e 129 (146)
T PF03704_consen 74 EAGDYEEALRLLQRALALDPY----DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREE 129 (146)
T ss_dssp HTT-HHHHHHHHHHHHHHSTT-----HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 468999999999999988752 36778899999999999999999999999888543
No 161
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=91.70 E-value=0.3 Score=30.59 Aligned_cols=37 Identities=19% Similarity=0.169 Sum_probs=27.6
Q ss_pred hHHhhhhHHHHHhhhcchhHHHHHHHHHHHhccCCCC
Q 023037 135 WFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDG 171 (288)
Q Consensus 135 ~f~~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~ 171 (288)
|..+..+||.+|...|+|.+|..+.+++...+...-|
T Consensus 1 ta~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G 37 (42)
T PF13374_consen 1 TASALNNLANAYRAQGRYEEALELLEEALEIRERLLG 37 (42)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH-----
T ss_pred CHHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhc
Confidence 3467789999999999999999999999998766543
No 162
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=91.27 E-value=4.3 Score=39.67 Aligned_cols=121 Identities=11% Similarity=0.037 Sum_probs=85.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHHHHhhhhhhhHHh
Q 023037 59 QTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKT 138 (288)
Q Consensus 59 ~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~~~~~~~~~~~~~~~~~~~~l~~i~~a~ner~~f~~ 138 (288)
.|.+++...++++.++++++++..-- +.+.- ..+++. ...+ ...+.+.+..+.++...++ ..+
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~-pev~~-~LA~v~--------l~~~----~E~~AI~ll~~aL~~~p~d---~~L 236 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERD-PEVAV-LLARVY--------LLMN----EEVEAIRLLNEALKENPQD---SEL 236 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcC-CcHHH-HHHHHH--------HhcC----cHHHHHHHHHHHHHhCCCC---HHH
Confidence 35667777889999999999987665 43211 111111 1122 2345566666666655444 556
Q ss_pred hhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Q 023037 139 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKA 208 (288)
Q Consensus 139 ~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE~~~y~~~~n~~kak~~y~~A 208 (288)
-.-.|..++.+++|+.|.++.++.-...+ ++. +.+..-.++|..++++..|..++.++
T Consensus 237 L~~Qa~fLl~k~~~~lAL~iAk~av~lsP-----~~f-------~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 237 LNLQAEFLLSKKKYELALEIAKKAVELSP-----SEF-------ETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCc-----hhH-------HHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 66789999999999999999999988833 444 88899999999999999998877654
No 163
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=91.26 E-value=14 Score=35.10 Aligned_cols=137 Identities=9% Similarity=0.110 Sum_probs=102.0
Q ss_pred hhHHhhhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhc
Q 023037 134 LWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKS 213 (288)
Q Consensus 134 ~~f~~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE~~~y~~~~n~~kak~~y~~A~~~a~ 213 (288)
-....-.|+|..|.+.++-+.+-+.++++.+- +-. ...-++|.+.-+++-.--+|-.=..+.+..+..+-.
T Consensus 113 e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~-------a~s--tg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iE 183 (412)
T COG5187 113 EGSEADRNIAEYYCQIMDIQNGFEWMRRLMRD-------AMS--TGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIE 183 (412)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH-------HHh--cccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHH
Confidence 33466779999999999999998888888765 111 133489999999998888888877787777765544
Q ss_pred cCCChhHHHHHHhhcchhhhhhccHHHHHHHHHHHHhhhhhhCChhHHHHhHHHHHHHHhcCCCCC
Q 023037 214 AIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLANMLMESEVN 279 (288)
Q Consensus 214 ~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EaF~~y~e~g~~~a~~~LKY~~L~~il~~~~~d 279 (288)
.=.+=.=--..+.--|+..|.-++|+.|-..|.+++-.|.++.=..--.+.+|++.|-++.-.-.|
T Consensus 184 kGgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~S~El~sY~~~vrYa~~~Gl~~leR~d 249 (412)
T COG5187 184 KGGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTFESSELISYSRAVRYAIFCGLLRLERRD 249 (412)
T ss_pred hCCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhccccccccccHHHHHHHHHHhhhheeehhh
Confidence 333312222344456777889999999999999999999887766677789999999998744433
No 164
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=90.90 E-value=0.82 Score=34.57 Aligned_cols=64 Identities=17% Similarity=0.297 Sum_probs=48.8
Q ss_pred hhHHHHHHhhcccCCCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 023037 15 VSRVLCSILEKGLVETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (288)
Q Consensus 15 ~~~~~~y~~ak~~~~~d~~~Al~~f~~ii~~~~e~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~ 84 (288)
|++++.-|++ .+.++|+..+.++++...+..+ +|.++-.|+..|...|+|.+++++-..=+...
T Consensus 10 ie~GlkLY~~-----~~~~~Al~~W~~aL~k~~~~~~-rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A 73 (80)
T PF10579_consen 10 IEKGLKLYHQ-----NETQQALQKWRKALEKITDRED-RFRVLGYLIQAHMEWGKYREMLAFALQQLEIA 73 (80)
T ss_pred HHHHHHHhcc-----chHHHHHHHHHHHHhhcCChHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555544 4568999999999997655333 79999999999999999999998765444433
No 165
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=90.59 E-value=14 Score=35.44 Aligned_cols=136 Identities=12% Similarity=0.143 Sum_probs=88.9
Q ss_pred hhhhHHhhhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCcccccc-chHHHHHHHHHHHHHhhcCHHHHHHHHHHHHh
Q 023037 132 ERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKG-SQLLEVYAIEIQMYTETKNNKKLKQLYQKALA 210 (288)
Q Consensus 132 er~~f~~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~-~~llEv~~lE~~~y~~~~n~~kak~~y~~A~~ 210 (288)
|--.-...+|+|..|.+.|+-+.+.+.+++.-.. ..+ ..-++|...-+++-.--.|..=..+..++|..
T Consensus 100 E~ev~ea~~~kaeYycqigDkena~~~~~~t~~k----------tvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~ 169 (393)
T KOG0687|consen 100 ESEVREAMLRKAEYYCQIGDKENALEALRKTYEK----------TVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKS 169 (393)
T ss_pred hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH----------HhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 3334467889999999999999998888887554 111 23378887777776555554444444444433
Q ss_pred hhccCCChhHHHHHHhhcchhhhhhccHHHHHHHHHHHHhhhhhhCChhHHHHhHHHHHHHHhcCCC
Q 023037 211 IKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLANMLMESE 277 (288)
Q Consensus 211 ~a~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EaF~~y~e~g~~~a~~~LKY~~L~~il~~~~ 277 (288)
+-..=.+=-=--..+.--|.-.|.-+||+.|-..|.++.-.|.+..=-.--....|+|+|.++.-.-
T Consensus 170 liE~GgDWeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTFtS~El~~Y~~~v~Ytv~~g~i~leR 236 (393)
T KOG0687|consen 170 LIEEGGDWERRNRLKVYQGLYCMSVRNFKEAADLFLDSVSTFTSYELMSYETFVRYTVITGLIALER 236 (393)
T ss_pred HHHhCCChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHcccccceecccHHHHHHHHHHHhhheecc
Confidence 2222122111112334446677899999999999999998887654444455678999999987433
No 166
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=90.58 E-value=1.4 Score=41.02 Aligned_cols=66 Identities=14% Similarity=0.104 Sum_probs=43.3
Q ss_pred hhHHhhhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHHHHHHHhhcCH-HHHHHHHHHHHhh
Q 023037 134 LWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNN-KKLKQLYQKALAI 211 (288)
Q Consensus 134 ~~f~~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE~~~y~~~~n~-~kak~~y~~A~~~ 211 (288)
.+..+.+.++..++..|+|++|.+++.+.... .+ .|. ++.+.-+-+...+|+- ..+.+.+.+....
T Consensus 199 ~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~---~~--~~~-------d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 199 STPKLLNGLAVCHLQLGHYEEAEELLEEALEK---DP--NDP-------DTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp -SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC----C--CHH-------HHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh---cc--CCH-------HHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 35577778999999999999999988886443 11 232 5666677777777766 5566666665443
No 167
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=90.45 E-value=2.1 Score=42.38 Aligned_cols=55 Identities=20% Similarity=0.155 Sum_probs=47.3
Q ss_pred CCCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 023037 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTY 83 (288)
Q Consensus 28 ~~~d~~~Al~~f~~ii~~~~e~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~ 83 (288)
..+++++|+..|++.+..+++..+ .--++++++-+|..+|+++++++++++.+..
T Consensus 87 ~lGryeEAIa~f~rALeL~Pd~ae-A~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 87 SKGRVKDALAQFETALELNPNPDE-AQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HcCCHHHHHHHHHHHHhhCCCchH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 468999999999999999876433 1246799999999999999999999999886
No 168
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=90.38 E-value=8 Score=34.45 Aligned_cols=175 Identities=18% Similarity=0.277 Sum_probs=108.6
Q ss_pred eeeeeeeeccchhhhHHHHHHhhccc-----------------CCCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHH
Q 023037 2 WIYIFFLFSDEFTVSRVLCSILEKGL-----------------VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLY 64 (288)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~y~~ak~~-----------------~~~d~~~Al~~f~~ii~~~~e~~~~~~kal~~l~~l~ 64 (288)
|+||.|+|- +-+.+.|.-|=-+ ..-||+.+++...+-++..+.. .--..|+...
T Consensus 29 WlfIif~Fp----~iG~VaYfvav~LPEl~~~R~a~~~~~a~~q~ldP~R~~Rea~~~~~~ApTv-----qnr~rLa~al 99 (251)
T COG4700 29 WLFIIFCFP----VIGCVAYFVAVMLPELGADRHAHTLLMALQQKLDPERHLREATEELAIAPTV-----QNRYRLANAL 99 (251)
T ss_pred HHHHHHHhc----ccchhhHHHHHhhhHhcccchhHHHHHHHHHhcChhHHHHHHHHHHhhchhH-----HHHHHHHHHH
Confidence 888988874 3344444433211 1235555555555444443321 1124788899
Q ss_pred HHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHHHHhhhhhhhHHhhhhHHH
Q 023037 65 YRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCK 144 (288)
Q Consensus 65 ~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~~~~~~~~~~~~~~~~~~~~l~~i~~a~ner~~f~~~~kL~~ 144 (288)
...|++.++..+|++.++-. +.. + . -+-+-+++
T Consensus 100 ~elGr~~EA~~hy~qalsG~-------------------fA~--d--~------------------------a~lLglA~ 132 (251)
T COG4700 100 AELGRYHEAVPHYQQALSGI-------------------FAH--D--A------------------------AMLLGLAQ 132 (251)
T ss_pred HHhhhhhhhHHHHHHHhccc-------------------cCC--C--H------------------------HHHHHHHH
Confidence 99999999999999987644 211 1 1 13355677
Q ss_pred HHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCC-hhHHHH
Q 023037 145 IWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH-PRIMGI 223 (288)
Q Consensus 145 lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE~~~y~~~~n~~kak~~y~~A~~~a~~I~~-p~i~a~ 223 (288)
..+..+++..+...|..|-..=+... +. +-+++-.++|..++.+..|..++..|. .| |--+|.
T Consensus 133 Aqfa~~~~A~a~~tLe~l~e~~pa~r-~p---------d~~Ll~aR~laa~g~~a~Aesafe~a~------~~ypg~~ar 196 (251)
T COG4700 133 AQFAIQEFAAAQQTLEDLMEYNPAFR-SP---------DGHLLFARTLAAQGKYADAESAFEVAI------SYYPGPQAR 196 (251)
T ss_pred HHHhhccHHHHHHHHHHHhhcCCccC-CC---------CchHHHHHHHHhcCCchhHHHHHHHHH------HhCCCHHHH
Confidence 78888888888888888877721110 12 236677888899999998888888764 45 666777
Q ss_pred HHhhcchhhhhhccHHHHHHHHHHHHh
Q 023037 224 IRECGGKMHMAERQWADAATDFFEAFK 250 (288)
Q Consensus 224 I~~~~G~l~~~ekdy~~A~syF~EaF~ 250 (288)
++- |.+.+.+|.-..|..-.-+-|+
T Consensus 197 ~~Y--~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 197 IYY--AEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHH--HHHHHHhcchhHHHHHHHHHHH
Confidence 654 5555566655555544444433
No 169
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=90.28 E-value=8.2 Score=38.91 Aligned_cols=186 Identities=12% Similarity=0.075 Sum_probs=112.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHHHHhh---
Q 023037 54 FKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAK--- 130 (288)
Q Consensus 54 ~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~~~~~~~~~~~~~~~~~~~~l~~i~~a~--- 130 (288)
--..++-+.+|.....+..+++.-..+..++++.-.+..+..+....+-.+...+ .+....+..+..+.+..-+
T Consensus 100 t~~~yn~aVi~yh~~~~g~a~~~~~~lv~r~e~le~~~aa~v~~l~~~l~~~t~q---~e~al~~l~vL~~~~~~~~~~~ 176 (696)
T KOG2471|consen 100 TVMDYNFAVIFYHHEENGSAMQLSSNLVSRTESLESSSAASVTLLSDLLAAETSQ---CEEALDYLNVLAEIEAEKRMKL 176 (696)
T ss_pred hHHhhhhheeeeeHhhcchHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhhccc
Confidence 4567788889999999999999988888888555455444455544333333221 1122333333333332111
Q ss_pred ------------------hhhhhH------HhhhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHH
Q 023037 131 ------------------NERLWF------KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYA 186 (288)
Q Consensus 131 ------------------ner~~f------~~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~ 186 (288)
.+|-.. .+..-.+..|++.++..-+ -+|+|...-..+ |. -+..+
T Consensus 177 ~gn~~~~nn~~kt~s~~aAe~s~~~a~~k~~~~~ykVr~llq~~~Lk~~---krevK~vmn~a~---~s------~~~l~ 244 (696)
T KOG2471|consen 177 VGNHIPANNLLKTLSPSAAERSFSTADLKLELQLYKVRFLLQTRNLKLA---KREVKHVMNIAQ---DS------SMALL 244 (696)
T ss_pred cccccchhhhcccCCcchhcccchhhccchhhhHhhHHHHHHHHHHHHH---HHhhhhhhhhcC---CC------cHHHH
Confidence 011111 2333445556666655544 455555544442 21 15678
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHhhhc---cCCChhHHHHHHhhcchhhhhhccHHHHHHHHHHHHhhhhh
Q 023037 187 IEIQMYTETKNNKKLKQLYQKALAIKS---AIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDE 254 (288)
Q Consensus 187 lE~~~y~~~~n~~kak~~y~~A~~~a~---~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EaF~~y~e 254 (288)
+-++.++..||++||-..+..+.--.. .|+-.-..++-.---|-+|+.-+.|.-+.-+|..|++|+..
T Consensus 245 LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~ 315 (696)
T KOG2471|consen 245 LKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCS 315 (696)
T ss_pred HHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHH
Confidence 899999999999998877765432111 12212234555566799999999999999999999998875
No 170
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=90.10 E-value=4.6 Score=30.84 Aligned_cols=80 Identities=14% Similarity=0.125 Sum_probs=55.6
Q ss_pred HhhcCHHHHHHHHHHHHhhhccCCChh---HHHHHHhhcchhhhhhccHHHHHHHHHHHHhhhhhhCChhHHHHhHHHHH
Q 023037 193 TETKNNKKLKQLYQKALAIKSAIPHPR---IMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVL 269 (288)
Q Consensus 193 ~~~~n~~kak~~y~~A~~~a~~I~~p~---i~a~I~~~~G~l~~~ekdy~~A~syF~EaF~~y~e~g~~~a~~~LKY~~L 269 (288)
...+|++.|...+.+.......-..+. -...--+..|.+|..-|+++.|...|-||.+...+.||...+.- =.+.|
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~l~~-al~~~ 87 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRRCLAY-ALSWL 87 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHHHHH-HHHHH
Confidence 456899999888877765554333322 22222344788999999999999999999999999999766442 13344
Q ss_pred HHHh
Q 023037 270 ANML 273 (288)
Q Consensus 270 ~~il 273 (288)
+.++
T Consensus 88 ~~l~ 91 (94)
T PF12862_consen 88 ANLL 91 (94)
T ss_pred HHHh
Confidence 4443
No 171
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=90.05 E-value=0.89 Score=27.38 Aligned_cols=31 Identities=19% Similarity=0.348 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHhhhc
Q 023037 183 EVYAIEIQMYTETKNNKKLKQLYQKALAIKS 213 (288)
Q Consensus 183 Ev~~lE~~~y~~~~n~~kak~~y~~A~~~a~ 213 (288)
+++..-+++|..++|+.+|...|.+|+.+..
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 5777888888888888888888888887654
No 172
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=89.61 E-value=6.5 Score=41.49 Aligned_cols=75 Identities=15% Similarity=0.054 Sum_probs=43.9
Q ss_pred HHHHhhccc--CCCCHHHHHHHHHHh------hcCCc-cchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhh
Q 023037 19 LCSILEKGL--VETDPEGALAGFAEV------VAMEP-EKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVT 89 (288)
Q Consensus 19 ~~y~~ak~~--~~~d~~~Al~~f~~i------i~~~~-e~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ 89 (288)
.+|..|-++ +-.||++|++.|++= |.... .-.+..-+-=..-|..+.+.|++|.++..|.+..-.. ..+.
T Consensus 662 elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~~~-kaie 740 (1636)
T KOG3616|consen 662 ELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLI-KAIE 740 (1636)
T ss_pred HHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHH-HHHH
Confidence 356666665 456888999888752 22110 0011111111234677888999999999998887777 4454
Q ss_pred hhhHH
Q 023037 90 RNYSE 94 (288)
Q Consensus 90 ka~~~ 94 (288)
-+-.+
T Consensus 741 aai~a 745 (1636)
T KOG3616|consen 741 AAIGA 745 (1636)
T ss_pred HHhhh
Confidence 44333
No 173
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=89.57 E-value=12 Score=36.96 Aligned_cols=80 Identities=15% Similarity=0.128 Sum_probs=59.3
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhHHhhhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHHHHHHH
Q 023037 114 LLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYT 193 (288)
Q Consensus 114 ~~~~~~~~~l~~i~~a~ner~~f~~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE~~~y~ 193 (288)
...++++..+. -+-.....-+.+|.|+.-.|.+.++..|++.-.+... |+ -.|-.-+++..
T Consensus 422 KAKkf~ek~L~------~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~-----D~--------~LH~~Lgd~~~ 482 (564)
T KOG1174|consen 422 KAKKFAEKSLK------INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFP-----DV--------NLHNHLGDIMR 482 (564)
T ss_pred HHHHHHHhhhc------cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcc-----cc--------HHHHHHHHHHH
Confidence 44555555443 2334446778999999999999999999988776622 33 35666788888
Q ss_pred hhcCHHHHHHHHHHHHhhh
Q 023037 194 ETKNNKKLKQLYQKALAIK 212 (288)
Q Consensus 194 ~~~n~~kak~~y~~A~~~a 212 (288)
+++.+.++-..|..|+.+.
T Consensus 483 A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 483 AQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred HhhhHHHHHHHHHHHHhcC
Confidence 9999999999999998763
No 174
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=88.94 E-value=3.7 Score=31.38 Aligned_cols=63 Identities=21% Similarity=0.235 Sum_probs=50.5
Q ss_pred cccCCCCHHHHHHHHHHhhcCCcc---ch---hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhh
Q 023037 25 KGLVETDPEGALAGFAEVVAMEPE---KA---EWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAV 88 (288)
Q Consensus 25 k~~~~~d~~~Al~~f~~ii~~~~e---~~---~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v 88 (288)
.++..+|+.+|++.+.+..+.... .. . ..-|+..++.++...|+++++++.+++.+...+..-
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~-~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~ 75 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSG-LAYALLNLAELHRRFGHYEEALQALEEAIRLARENG 75 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHH-HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHC
Confidence 456789999999999999986431 11 3 245788899999999999999999999999885543
No 175
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=88.85 E-value=4 Score=37.42 Aligned_cols=96 Identities=14% Similarity=0.117 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHHHHhhhhhh
Q 023037 55 KALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERL 134 (288)
Q Consensus 55 kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~~~~~~~~~~~~~~~~~~~~l~~i~~a~ner~ 134 (288)
.-|++=+.++.+.|++..+.++..-++... ..-.....+..+.++++.++..+...+ . .......+|+|++....
T Consensus 11 dLL~~Ga~~ll~~~Q~~sg~DL~~lliev~-~~~~~~~~~~~~~rl~~l~~~~~~~~p-~---r~~fi~~ai~WS~~~~~ 85 (260)
T PF04190_consen 11 DLLYSGALILLKHGQYGSGADLALLLIEVY-EKSEDPVDEESIARLIELISLFPPEEP-E---RKKFIKAAIKWSKFGSY 85 (260)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-HHTT---SHHHHHHHHHHHHHS-TT-T-T---HHHHHHHHHHHHHTSS-
T ss_pred HHHHHHHHHHHHCCCcchHHHHHHHHHHHH-HHcCCCCCHHHHHHHHHHHHhCCCCcc-h---HHHHHHHHHHHHccCCC
Confidence 345566778888888888888887777776 433334455566666666666543222 2 44566677889854444
Q ss_pred hH---HhhhhHHHHHhhhcchhHH
Q 023037 135 WF---KTNLKLCKIWFDMGEYGRM 155 (288)
Q Consensus 135 ~f---~~~~kL~~lyl~~~~y~~~ 155 (288)
.+ .+..-+|..|...|+|.+|
T Consensus 86 ~~Gdp~LH~~~a~~~~~e~~~~~A 109 (260)
T PF04190_consen 86 KFGDPELHHLLAEKLWKEGNYYEA 109 (260)
T ss_dssp TT--HHHHHHHHHHHHHTT-HHHH
T ss_pred CCCCHHHHHHHHHHHHhhccHHHH
Confidence 44 8899999999999999885
No 176
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.62 E-value=18 Score=33.23 Aligned_cols=89 Identities=12% Similarity=0.269 Sum_probs=68.9
Q ss_pred HHHHHHh-hcccCCCCHHHHHHHHHHhhcCCccchh--hHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhhhhhhh
Q 023037 17 RVLCSIL-EKGLVETDPEGALAGFAEVVAMEPEKAE--WGFKALKQTVKLYYRL-GKYKEMMDAYREMLTYIKSAVTRNY 92 (288)
Q Consensus 17 ~~~~y~~-ak~~~~~d~~~Al~~f~~ii~~~~e~~~--~~~kal~~l~~l~~~~-g~~~~~l~~~~~~l~~~~~~v~ka~ 92 (288)
..+.|-+ ++..+..||.+|+..+++.|++-.+-|+ ...+-...|+.+|-.. .++++++.+|++.-.|.+..-+.+-
T Consensus 73 aat~YveA~~cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ss 152 (288)
T KOG1586|consen 73 AATTYVEAANCYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSS 152 (288)
T ss_pred HHHHHHHHHHHhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhh
Confidence 4456666 3457788999999999998887544333 3455566799999887 8999999999999999977778888
Q ss_pred HHHHHHHHHHHhc
Q 023037 93 SEKCINNIMDFVS 105 (288)
Q Consensus 93 ~~k~i~~ild~~~ 105 (288)
+-|++-++-++-+
T Consensus 153 ANKC~lKvA~yaa 165 (288)
T KOG1586|consen 153 ANKCLLKVAQYAA 165 (288)
T ss_pred HHHHHHHHHHHHH
Confidence 8888887666543
No 177
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=88.46 E-value=8.5 Score=37.26 Aligned_cols=162 Identities=19% Similarity=0.270 Sum_probs=88.2
Q ss_pred CCCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhh-HHHHHHHHHHHhcc
Q 023037 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNY-SEKCINNIMDFVSG 106 (288)
Q Consensus 28 ~~~d~~~Al~~f~~ii~~~~e~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~-~~k~i~~ild~~~~ 106 (288)
..++|..||.-.+.+-.+..|.++ +.+.+.++++..|+.+..+.-++++|.+- +.--+-+ .-|.++++...+..
T Consensus 201 ~~~e~k~AI~Dlk~askLs~DnTe----~~ykis~L~Y~vgd~~~sL~~iRECLKld-pdHK~Cf~~YKklkKv~K~les 275 (504)
T KOG0624|consen 201 AEGEPKKAIHDLKQASKLSQDNTE----GHYKISQLLYTVGDAENSLKEIRECLKLD-PDHKLCFPFYKKLKKVVKSLES 275 (504)
T ss_pred hcCcHHHHHHHHHHHHhccccchH----HHHHHHHHHHhhhhHHHHHHHHHHHHccC-cchhhHHHHHHHHHHHHHHHHH
Confidence 567888888888777666544333 45788999999999999999999998876 4311110 11222222222211
Q ss_pred CCCcchhhHHHHHHHHHHHHHH-hhhh-h-hhH--HhhhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchH
Q 023037 107 SASQNFSLLREFYQTTLKALEE-AKNE-R-LWF--KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQL 181 (288)
Q Consensus 107 ~~~~~~~~~~~~~~~~l~~i~~-a~ne-r-~~f--~~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~l 181 (288)
... ...+.-+..|++.=+. -+++ . -.. +.--.++..+.+-|++.+|.....|+...-+ ||-
T Consensus 276 ~e~---~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~-----~dv------ 341 (504)
T KOG0624|consen 276 AEQ---AIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDP-----DDV------ 341 (504)
T ss_pred HHH---HHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCc-----hHH------
Confidence 000 0011112223222111 0011 1 111 2333577888999999999988888887711 332
Q ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHH
Q 023037 182 LEVYAIEIQMYTETKNNKKLKQLYQKAL 209 (288)
Q Consensus 182 lEv~~lE~~~y~~~~n~~kak~~y~~A~ 209 (288)
+++---...|.....|..|..-|.+|.
T Consensus 342 -~~l~dRAeA~l~dE~YD~AI~dye~A~ 368 (504)
T KOG0624|consen 342 -QVLCDRAEAYLGDEMYDDAIHDYEKAL 368 (504)
T ss_pred -HHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 333334444444444555555555554
No 178
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=88.41 E-value=8.1 Score=35.54 Aligned_cols=118 Identities=15% Similarity=0.168 Sum_probs=77.1
Q ss_pred cCCCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhcc
Q 023037 27 LVETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSG 106 (288)
Q Consensus 27 ~~~~d~~~Al~~f~~ii~~~~e~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~~~~ 106 (288)
+..+|...|+..|++....++ .+| +++.-+|-+|-+.|+.+++-.-|.+.+.+. +.-+. .++|+--..-
T Consensus 111 ~~~g~~~~A~~~~rkA~~l~p--~d~--~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~-~~~p~-----~~nNlgms~~- 179 (257)
T COG5010 111 IRNGNFGEAVSVLRKAARLAP--TDW--EAWNLLGAALDQLGRFDEARRAYRQALELA-PNEPS-----IANNLGMSLL- 179 (257)
T ss_pred HHhcchHHHHHHHHHHhccCC--CCh--hhhhHHHHHHHHccChhHHHHHHHHHHHhc-cCCch-----hhhhHHHHHH-
Confidence 357888899999999888764 456 556778899999999999999999999988 65333 4455332111
Q ss_pred CCCcchhhHHHHHHHHHHHHHHhh-hhhhhHHhhhhHHHHHhhhcchhHHHHHHHHHH
Q 023037 107 SASQNFSLLREFYQTTLKALEEAK-NERLWFKTNLKLCKIWFDMGEYGRMSKILKELH 163 (288)
Q Consensus 107 ~~~~~~~~~~~~~~~~l~~i~~a~-ner~~f~~~~kL~~lyl~~~~y~~~~~ll~elk 163 (288)
..+ +. +.+...+..+. +...--++.-+|+.+.-..|++.+|..++..-.
T Consensus 180 L~g-d~-------~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 180 LRG-DL-------EDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred HcC-CH-------HHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhccccc
Confidence 111 22 22222222222 223334677888999999999998877665443
No 179
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=88.12 E-value=30 Score=37.26 Aligned_cols=171 Identities=11% Similarity=0.160 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhcc-CCCcchhhHHHHHHHHHHHHHHhhhhh
Q 023037 55 KALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSG-SASQNFSLLREFYQTTLKALEEAKNER 133 (288)
Q Consensus 55 kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~~~~-~~~~~~~~~~~~~~~~l~~i~~a~ner 133 (288)
-|.++|+..|-..|+..+|...|++...|- +.+--.+--..=.. |-++.. +.+.+.-..-.+|+-+--...
T Consensus 968 AAcYhlaR~YEn~g~v~~Av~FfTrAqafs-nAIRlcKEnd~~d~-L~nlal~s~~~d~v~aArYyEe~g~~~~------ 1039 (1416)
T KOG3617|consen 968 AACYHLARMYENDGDVVKAVKFFTRAQAFS-NAIRLCKENDMKDR-LANLALMSGGSDLVSAARYYEELGGYAH------ 1039 (1416)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHH-HHHHHHHhcCHHHH-HHHHHhhcCchhHHHHHHHHHHcchhhh------
Confidence 577899999999999999999999999887 54421111111111 111111 111222223333333322211
Q ss_pred hhHHhhhhHHHHHhhhcchhHHHHHHHHHHH------hccCCCCCccccccchHHHHHHHHHHHHHhhcCHHHHHHHHHH
Q 023037 134 LWFKTNLKLCKIWFDMGEYGRMSKILKELHK------SCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQK 207 (288)
Q Consensus 134 ~~f~~~~kL~~lyl~~~~y~~~~~ll~elkk------~~~~~~~~dDk~~~~~llEv~~lE~~~y~~~~n~~kak~~y~~ 207 (288)
+-+.||...|.+.+|.++-=+..+ +....+.++|. ++..-=+..+....+|.||-.++-.
T Consensus 1040 -------~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp-------~ll~RcadFF~~~~qyekAV~lL~~ 1105 (1416)
T KOG3617|consen 1040 -------KAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDP-------KLLRRCADFFENNQQYEKAVNLLCL 1105 (1416)
T ss_pred -------HHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCH-------HHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 335677777777776444322111 11112223555 2333334445555567777666666
Q ss_pred HHhhhccC-----------------------CCh--hHHHHHHhhcchhhhhhccHHHHHHHHHH
Q 023037 208 ALAIKSAI-----------------------PHP--RIMGIIRECGGKMHMAERQWADAATDFFE 247 (288)
Q Consensus 208 A~~~a~~I-----------------------~~p--~i~a~I~~~~G~l~~~ekdy~~A~syF~E 247 (288)
||...-++ ..| .---.|-++-|-+.+.+|+|..|-.-|-+
T Consensus 1106 ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQ 1170 (1416)
T KOG3617|consen 1106 AREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQ 1170 (1416)
T ss_pred HHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhh
Confidence 65543321 112 12234667777778888888877766543
No 180
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=87.90 E-value=20 Score=32.31 Aligned_cols=116 Identities=20% Similarity=0.240 Sum_probs=73.2
Q ss_pred HHHHhhcCCc-cchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhccCCC--cchhh
Q 023037 38 GFAEVVAMEP-EKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSAS--QNFSL 114 (288)
Q Consensus 38 ~f~~ii~~~~-e~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~~~~~~~--~~~~~ 114 (288)
...++++.+. ++...+...++.=|.=++..|+|++|...|+..+... +..+.. +|+|+ +++.-. .-...
T Consensus 78 e~E~i~~deek~k~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~c-p~~~~e-----~rsIl--y~Nraaa~iKl~k 149 (271)
T KOG4234|consen 78 EIEKIFSDEEKDKAIEKADSLKKEGNELFKNGDYEEANSKYQEALESC-PSTSTE-----ERSIL--YSNRAAALIKLRK 149 (271)
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhC-ccccHH-----HHHHH--HhhhHHHHHHhhh
Confidence 3444554422 3444467788889999999999999999999999999 655442 23322 221100 00112
Q ss_pred HHHHHHHHHHHHH-HhhhhhhhHHhhhhHHHHHhhhcchhHHHHHHHHHHHh
Q 023037 115 LREFYQTTLKALE-EAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKS 165 (288)
Q Consensus 115 ~~~~~~~~l~~i~-~a~ner~~f~~~~kL~~lyl~~~~y~~~~~ll~elkk~ 165 (288)
-+..++-|.+.|+ |..++ +.-.|.|.+|-...+|+++.+-++.+...
T Consensus 150 ~e~aI~dcsKaiel~pty~----kAl~RRAeayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 150 WESAIEDCSKAIELNPTYE----KALERRAEAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred HHHHHHHHHhhHhcCchhH----HHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 2333444555544 33333 34458899999999999998888877777
No 181
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=87.19 E-value=1.4 Score=27.54 Aligned_cols=29 Identities=21% Similarity=0.287 Sum_probs=16.6
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHhhhccC
Q 023037 187 IEIQMYTETKNNKKLKQLYQKALAIKSAI 215 (288)
Q Consensus 187 lE~~~y~~~~n~~kak~~y~~A~~~a~~I 215 (288)
.-+.+|..+|++.+|..+|.+++.+....
T Consensus 4 ~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~~ 32 (36)
T PF13176_consen 4 NLGRIYRQQGDYEKAIEYYEQALALARDP 32 (36)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 34556666666666666666666555443
No 182
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=87.07 E-value=0.69 Score=28.81 Aligned_cols=32 Identities=22% Similarity=0.589 Sum_probs=25.8
Q ss_pred HHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHH
Q 023037 39 FAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMM 74 (288)
Q Consensus 39 f~~ii~~~~e~~~~~~kal~~l~~l~~~~g~~~~~l 74 (288)
|++.|+.+|+. ..++.++|.+|...|++++|.
T Consensus 2 y~kAie~~P~n----~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNN----AEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCC----HHHHHHHHHHHHHCcCHHhhc
Confidence 66777776542 467899999999999999985
No 183
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=86.99 E-value=1.6 Score=25.97 Aligned_cols=29 Identities=24% Similarity=0.314 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHhh
Q 023037 183 EVYAIEIQMYTETKNNKKLKQLYQKALAI 211 (288)
Q Consensus 183 Ev~~lE~~~y~~~~n~~kak~~y~~A~~~ 211 (288)
+++..-+.+|..+|++.+|+..|.+|+.+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 45555666667777777777777666654
No 184
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=85.54 E-value=14 Score=36.16 Aligned_cols=108 Identities=15% Similarity=0.152 Sum_probs=78.9
Q ss_pred HHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhHH
Q 023037 142 LCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIM 221 (288)
Q Consensus 142 L~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE~~~y~~~~n~~kak~~y~~A~~~a~~I~~p~i~ 221 (288)
|..++...+.|+.|..++++|.+. + . |+..+-.++|...++-.+|-+.+.++++.. |.-
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~-------~-p-------ev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-----p~d- 233 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRER-------D-P-------EVAVLLARVYLLMNEEVEAIRLLNEALKEN-----PQD- 233 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhc-------C-C-------cHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-----CCC-
Confidence 345556678999999999999877 3 3 566677888888888889999999988432 222
Q ss_pred HHHHhhcchhhhhhccHHHHHHHHHHHHhhhhhhCChhHHHHhHHHHHHHHhcC
Q 023037 222 GIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLANMLME 275 (288)
Q Consensus 222 a~I~~~~G~l~~~ekdy~~A~syF~EaF~~y~e~g~~~a~~~LKY~~L~~il~~ 275 (288)
+.+-..-+..++..++|+.|....-+|-+.. |....+.-+|+.|-|..+
T Consensus 234 ~~LL~~Qa~fLl~k~~~~lAL~iAk~av~ls-----P~~f~~W~~La~~Yi~~~ 282 (395)
T PF09295_consen 234 SELLNLQAEFLLSKKKYELALEIAKKAVELS-----PSEFETWYQLAECYIQLG 282 (395)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-----chhHHHHHHHHHHHHhcC
Confidence 6666667777889999999999988886543 666666666666665543
No 185
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=85.54 E-value=19 Score=30.25 Aligned_cols=84 Identities=11% Similarity=0.084 Sum_probs=61.5
Q ss_pred hHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCC-hh
Q 023037 141 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH-PR 219 (288)
Q Consensus 141 kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE~~~y~~~~n~~kak~~y~~A~~~a~~I~~-p~ 219 (288)
+-|.-.++.|+|.+|.+.++.|..--+-. .+--.+.+-.+-.|+..++++.|.+.+..=++.--.-+. |.
T Consensus 15 ~~a~~~l~~~~Y~~A~~~le~L~~ryP~g---------~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdY 85 (142)
T PF13512_consen 15 QEAQEALQKGNYEEAIKQLEALDTRYPFG---------EYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDY 85 (142)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCC---------cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccH
Confidence 45666788999999999999998875443 334467778889999999999999999998777655444 43
Q ss_pred HHHHHHhhcchhhhhhcc
Q 023037 220 IMGIIRECGGKMHMAERQ 237 (288)
Q Consensus 220 i~a~I~~~~G~l~~~ekd 237 (288)
.. -..|..|+...+
T Consensus 86 a~----Y~~gL~~~~~~~ 99 (142)
T PF13512_consen 86 AY----YMRGLSYYEQDE 99 (142)
T ss_pred HH----HHHHHHHHHHhh
Confidence 32 344555665544
No 186
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=85.50 E-value=18 Score=29.27 Aligned_cols=101 Identities=10% Similarity=0.020 Sum_probs=78.8
Q ss_pred hhhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCC
Q 023037 138 TNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH 217 (288)
Q Consensus 138 ~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE~~~y~~~~n~~kak~~y~~A~~~a~~I~~ 217 (288)
+...+|..+-..|+..+|..++++.... .. ++ ....+.+.-=+..|..+|++.+|.+.++.+.. .-|.
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~--gL---~~----~~~~~a~i~lastlr~LG~~deA~~~L~~~~~---~~p~ 70 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAA--GL---SG----ADRRRALIQLASTLRNLGRYDEALALLEEALE---EFPD 70 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHc--CC---Cc----hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---HCCC
Confidence 4567788899999999999999999775 11 22 44556777778899999999999999998864 3355
Q ss_pred hhHHHHHHhhcchhhhhhccHHHHHHHHHHHHh
Q 023037 218 PRIMGIIRECGGKMHMAERQWADAATDFFEAFK 250 (288)
Q Consensus 218 p~i~a~I~~~~G~l~~~ekdy~~A~syF~EaF~ 250 (288)
+.+-+.++...+......|+++.|.+-|.+++-
T Consensus 71 ~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 71 DELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred ccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 455666666667778899999999999998874
No 187
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=85.36 E-value=2.4 Score=25.48 Aligned_cols=29 Identities=24% Similarity=0.324 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHhh
Q 023037 183 EVYAIEIQMYTETKNNKKLKQLYQKALAI 211 (288)
Q Consensus 183 Ev~~lE~~~y~~~~n~~kak~~y~~A~~~ 211 (288)
+++..-+.+|..++++.+|...|++|+++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 44555566666666666666666666654
No 188
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=85.33 E-value=30 Score=31.71 Aligned_cols=158 Identities=13% Similarity=0.163 Sum_probs=100.9
Q ss_pred chhhHHHHHHHHHHHHHH--hhhhhhhHHhhhhHHHHHhhhc-chhHHHHHHHHHHHhccCCCCCccc-c-ccchHHHHH
Q 023037 111 NFSLLREFYQTTLKALEE--AKNERLWFKTNLKLCKIWFDMG-EYGRMSKILKELHKSCQREDGTDDQ-K-KGSQLLEVY 185 (288)
Q Consensus 111 ~~~~~~~~~~~~l~~i~~--a~ner~~f~~~~kL~~lyl~~~-~y~~~~~ll~elkk~~~~~~~~dDk-~-~~~~llEv~ 185 (288)
+.+....++..+.....- +..-....++..+.|.-.+.++ +|..+...+++...+|+.++..+-. . -..+-+-|+
T Consensus 8 ~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL 87 (278)
T PF08631_consen 8 DLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSIL 87 (278)
T ss_pred CHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHH
Confidence 344455555555554421 1112344478889999999999 9999999999999998774221111 1 114558888
Q ss_pred HHHHHHHHhhcCHHHHHHHHHHHHhhhccCCC-hhHH-HHHHhhcchhhhhhccHHHHHHHHHHHHhhhh----------
Q 023037 186 AIEIQMYTETKNNKKLKQLYQKALAIKSAIPH-PRIM-GIIRECGGKMHMAERQWADAATDFFEAFKNYD---------- 253 (288)
Q Consensus 186 ~lE~~~y~~~~n~~kak~~y~~A~~~a~~I~~-p~i~-a~I~~~~G~l~~~ekdy~~A~syF~EaF~~y~---------- 253 (288)
.+-++.|...+...-.-.+.+..+-+.+..++ |-+. =.++.+.+ ..|...+.+.+.....+.+
T Consensus 88 ~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~-----~~~~~~~~~~L~~mi~~~~~~e~~~~~~l 162 (278)
T PF08631_consen 88 RLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLK-----SFDEEEYEEILMRMIRSVDHSESNFDSIL 162 (278)
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhc-----cCChhHHHHHHHHHHHhcccccchHHHHH
Confidence 88899998888765444444444455667777 6555 45555555 5555666666655555544
Q ss_pred -------hhCChhHHHHhHHHHHHHHh
Q 023037 254 -------EAGNQRRIQCLKYLVLANML 273 (288)
Q Consensus 254 -------e~g~~~a~~~LKY~~L~~il 273 (288)
+...+.+..+|-|+++.++-
T Consensus 163 ~~i~~l~~~~~~~a~~~ld~~l~~r~~ 189 (278)
T PF08631_consen 163 HHIKQLAEKSPELAAFCLDYLLLNRFK 189 (278)
T ss_pred HHHHHHHhhCcHHHHHHHHHHHHHHhC
Confidence 23345777888888887764
No 189
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=85.26 E-value=30 Score=31.68 Aligned_cols=193 Identities=16% Similarity=0.175 Sum_probs=121.0
Q ss_pred cCCCCHHHHHHHHHHhhcCC----ccchhhHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHH
Q 023037 27 LVETDPEGALAGFAEVVAME----PEKAEWGFKALKQTVKLYYRLG-KYKEMMDAYREMLTYIKSAVTRNYSEKCINNIM 101 (288)
Q Consensus 27 ~~~~d~~~Al~~f~~ii~~~----~e~~~~~~kal~~l~~l~~~~g-~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~il 101 (288)
.+.+|.+.|..+|.++-... ++..+.-..-++++|+-..+.+ +++.+..++++...++ +...+ +
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l-~~~~~--~-------- 72 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDIL-EKPGK--M-------- 72 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH-Hhhhh--c--------
Confidence 45788888988888886543 3445556788899999999999 9999999999999998 33110 0
Q ss_pred HHhccCCCcchhhHHHHHHHHHHHHHHhhhhhhhHHhhhhHHHHHhhhcchhHH---HHHHHHHHHhccCCCCCcccccc
Q 023037 102 DFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRM---SKILKELHKSCQREDGTDDQKKG 178 (288)
Q Consensus 102 d~~~~~~~~~~~~~~~~~~~~l~~i~~a~ner~~f~~~~kL~~lyl~~~~y~~~---~~ll~elkk~~~~~~~~dDk~~~ 178 (288)
+ ...++ ...+-+++-.-|++.|++.+.++.. ..+++.+.+-.. ++
T Consensus 73 ~--~~~~~---------------------~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~------~~--- 120 (278)
T PF08631_consen 73 D--KLSPD---------------------GSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYG------NK--- 120 (278)
T ss_pred c--ccCCc---------------------HHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCC------CC---
Confidence 0 01111 1234456666788999998887764 445555533321 22
Q ss_pred chHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhc-cCCC-hhHHHHHHhhcchhhhhhccHHHHHHHHHHHHhhhhhhC
Q 023037 179 SQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKS-AIPH-PRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAG 256 (288)
Q Consensus 179 ~~llEv~~lE~~~y~~~~n~~kak~~y~~A~~~a~-~I~~-p~i~a~I~~~~G~l~~~ekdy~~A~syF~EaF~~y~e~g 256 (288)
.+++.+-+++....++...+...+.......+ .-.. ..++..|+.. .+++-..|...|.+.+-+--..+
T Consensus 121 ---~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l------~~~~~~~a~~~ld~~l~~r~~~~ 191 (278)
T PF08631_consen 121 ---PEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQL------AEKSPELAAFCLDYLLLNRFKSS 191 (278)
T ss_pred ---cHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHHHH------HhhCcHHHHHHHHHHHHHHhCCC
Confidence 37777888888777788877777777655443 2222 4444444433 44555778888877776554333
Q ss_pred ChhHHHHhHHHHHHHHhc
Q 023037 257 NQRRIQCLKYLVLANMLM 274 (288)
Q Consensus 257 ~~~a~~~LKY~~L~~il~ 274 (288)
... .+.=.|+..+++
T Consensus 192 ~~~---~~e~~vl~~~~~ 206 (278)
T PF08631_consen 192 EDQ---WLEKLVLTRVLL 206 (278)
T ss_pred hhH---HHHHHHHHHHHH
Confidence 211 344445555444
No 190
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=84.89 E-value=2 Score=28.68 Aligned_cols=27 Identities=22% Similarity=0.546 Sum_probs=24.6
Q ss_pred hhhHHHHHhhhcchhHHHHHHHHHHHh
Q 023037 139 NLKLCKIWFDMGEYGRMSKILKELHKS 165 (288)
Q Consensus 139 ~~kL~~lyl~~~~y~~~~~ll~elkk~ 165 (288)
.+.||..|++.|+++.|.++|+++...
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHHc
Confidence 578999999999999999999999854
No 191
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.63 E-value=9.1 Score=35.64 Aligned_cols=116 Identities=16% Similarity=0.212 Sum_probs=72.8
Q ss_pred hhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCC-h
Q 023037 140 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH-P 218 (288)
Q Consensus 140 ~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE~~~y~~~~n~~kak~~y~~A~~~a~~I~~-p 218 (288)
+.=|.+|.+.|+|++|...+...-. +|+.++--++..+.....-|+..+.+...+.+.-.- .
T Consensus 112 l~aa~i~~~~~~~deAl~~~~~~~~-----------------lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQ 174 (299)
T KOG3081|consen 112 LLAAIIYMHDGDFDEALKALHLGEN-----------------LEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQ 174 (299)
T ss_pred HHhhHHhhcCCChHHHHHHHhccch-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHH
Confidence 3446788899999988766544322 367777777766666555555555554443332111 1
Q ss_pred hHHHHHH----------------hhcc-------------hhhhhhccHHHHHHHHHHHHhhhhhhCChhHHHHhHHHHH
Q 023037 219 RIMGIIR----------------ECGG-------------KMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVL 269 (288)
Q Consensus 219 ~i~a~I~----------------~~~G-------------~l~~~ekdy~~A~syF~EaF~~y~e~g~~~a~~~LKY~~L 269 (288)
.-++-|. +++| .+|+..++|+.|.+-.-||...+ .++|.. |--|+.
T Consensus 175 LA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd--~~dpet---L~Nliv 249 (299)
T KOG3081|consen 175 LAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD--AKDPET---LANLIV 249 (299)
T ss_pred HHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc--CCCHHH---HHHHHH
Confidence 2222221 2222 46889999999999999999855 466665 666778
Q ss_pred HHHhcCCC
Q 023037 270 ANMLMESE 277 (288)
Q Consensus 270 ~~il~~~~ 277 (288)
|..|.|-+
T Consensus 250 ~a~~~Gkd 257 (299)
T KOG3081|consen 250 LALHLGKD 257 (299)
T ss_pred HHHHhCCC
Confidence 88877766
No 192
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=84.31 E-value=39 Score=33.00 Aligned_cols=73 Identities=16% Similarity=0.141 Sum_probs=34.2
Q ss_pred HHHHHHHHhhhhhhhHHhhhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHHHHHHHhhcCHHH
Q 023037 121 TTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKK 200 (288)
Q Consensus 121 ~~l~~i~~a~ner~~f~~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE~~~y~~~~n~~k 200 (288)
...+.+.|.+++- -+..-||.+++..+.|.+|.+.++...+. .+ + .+-+..-+.++-.++...+
T Consensus 316 ~~e~~l~~h~~~p---~L~~tLG~L~~k~~~w~kA~~~leaAl~~---~~---s-------~~~~~~la~~~~~~g~~~~ 379 (400)
T COG3071 316 AAEKWLKQHPEDP---LLLSTLGRLALKNKLWGKASEALEAALKL---RP---S-------ASDYAELADALDQLGEPEE 379 (400)
T ss_pred HHHHHHHhCCCCh---hHHHHHHHHHHHhhHHHHHHHHHHHHHhc---CC---C-------hhhHHHHHHHHHHcCChHH
Confidence 3334444444333 33444556666666666665555533333 11 1 1223333444555555555
Q ss_pred HHHHHHHHH
Q 023037 201 LKQLYQKAL 209 (288)
Q Consensus 201 ak~~y~~A~ 209 (288)
|-+.+..++
T Consensus 380 A~~~r~e~L 388 (400)
T COG3071 380 AEQVRREAL 388 (400)
T ss_pred HHHHHHHHH
Confidence 555555554
No 193
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=84.27 E-value=20 Score=33.64 Aligned_cols=126 Identities=15% Similarity=0.197 Sum_probs=85.6
Q ss_pred hhhHHHHHHHHHHHHHHhhhh-hhhHHhhhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHHHH
Q 023037 112 FSLLREFYQTTLKALEEAKNE-RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQ 190 (288)
Q Consensus 112 ~~~~~~~~~~~l~~i~~a~ne-r~~f~~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE~~ 190 (288)
.+..+.+.......++...++ +-| .-||.+|+..|++..|..-++...++.. |.. |+.+.=.+
T Consensus 135 ~~~~~~l~a~Le~~L~~nP~d~egW----~~Lg~~ym~~~~~~~A~~AY~~A~rL~g-----~n~-------~~~~g~ae 198 (287)
T COG4235 135 EQEMEALIARLETHLQQNPGDAEGW----DLLGRAYMALGRASDALLAYRNALRLAG-----DNP-------EILLGLAE 198 (287)
T ss_pred cccHHHHHHHHHHHHHhCCCCchhH----HHHHHHHHHhcchhHHHHHHHHHHHhCC-----CCH-------HHHHHHHH
Confidence 445677777777777765544 777 4689999999999999999999999932 222 44444333
Q ss_pred HHHhh---cCHHHHHHHHHHHHhhhccCCChhHHHHHHhhcchhhhhhccHHHHHHHHHHHHhhhhhhCChhH
Q 023037 191 MYTET---KNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRR 260 (288)
Q Consensus 191 ~y~~~---~n~~kak~~y~~A~~~a~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EaF~~y~e~g~~~a 260 (288)
+++.. ....+++.++.++++...+ +++.+. .-|.-+++++||+.|...+ +.+-.-...++|++
T Consensus 199 aL~~~a~~~~ta~a~~ll~~al~~D~~--~iral~----lLA~~afe~g~~~~A~~~W-q~lL~~lp~~~~rr 264 (287)
T COG4235 199 ALYYQAGQQMTAKARALLRQALALDPA--NIRALS----LLAFAAFEQGDYAEAAAAW-QMLLDLLPADDPRR 264 (287)
T ss_pred HHHHhcCCcccHHHHHHHHHHHhcCCc--cHHHHH----HHHHHHHHcccHHHHHHHH-HHHHhcCCCCCchH
Confidence 33333 3589999999999887654 233222 2355688999999999875 44443444566654
No 194
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=83.95 E-value=52 Score=36.03 Aligned_cols=196 Identities=10% Similarity=0.056 Sum_probs=128.6
Q ss_pred HHHHHHhhcccCCCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHH
Q 023037 17 RVLCSILEKGLVETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKC 96 (288)
Q Consensus 17 ~~~~y~~ak~~~~~d~~~Al~~f~~ii~~~~e~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~ 96 (288)
+...|+-|...+..|...|+..|-+.+..++. -..+.--||.+|+.-.+..-|..+|+....+= + +-+.+++.
T Consensus 459 e~~~~w~a~~~~rK~~~~al~ali~alrld~~----~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-a--tdaeaaaa 531 (1238)
T KOG1127|consen 459 ENSEFWVALGCMRKNSALALHALIRALRLDVS----LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-A--TDAEAAAA 531 (1238)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHhcccc----hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-c--hhhhhHHH
Confidence 45678889998889999999999999998753 24555679999999888888888888876654 2 22333333
Q ss_pred HHHHHHHhccCCCcchhhHHHHHHHHHHHHHHhhhhhhhHHhhhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCcccc
Q 023037 97 INNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQK 176 (288)
Q Consensus 97 i~~ild~~~~~~~~~~~~~~~~~~~~l~~i~~a~ner~~f~~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~ 176 (288)
+ .|.+..-+ ..+.....|+..-+.+....+.+.- .+++-.|++.+++.++..-.+-..+. |-+
T Consensus 532 ~---adtyae~~-----~we~a~~I~l~~~qka~a~~~k~nW-~~rG~yyLea~n~h~aV~~fQsALR~-------dPk- 594 (1238)
T KOG1127|consen 532 S---ADTYAEES-----TWEEAFEICLRAAQKAPAFACKENW-VQRGPYYLEAHNLHGAVCEFQSALRT-------DPK- 594 (1238)
T ss_pred H---HHHhhccc-----cHHHHHHHHHHHhhhchHHHHHhhh-hhccccccCccchhhHHHHHHHHhcC-------Cch-
Confidence 3 23233222 3334444466555544433222211 12899999999999988888887777 433
Q ss_pred ccchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhc-cCCChhHHHHHHhhcchhhhhhccHHHHHHHHHH
Q 023037 177 KGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKS-AIPHPRIMGIIRECGGKMHMAERQWADAATDFFE 247 (288)
Q Consensus 177 ~~~~llEv~~lE~~~y~~~~n~~kak~~y~~A~~~a~-~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~E 247 (288)
. .+...--+++|.+.|.+..|...+++|.-+.. +++-..-. ..|.+.-|.|+.|.+-.-+
T Consensus 595 --D--~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~-------A~~ecd~GkYkeald~l~~ 655 (1238)
T KOG1127|consen 595 --D--YNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKE-------AVMECDNGKYKEALDALGL 655 (1238)
T ss_pred --h--HHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHH-------HHHHHHhhhHHHHHHHHHH
Confidence 2 37777889999999999999988888865543 23222222 2344566666666554433
No 195
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=83.82 E-value=31 Score=32.02 Aligned_cols=126 Identities=17% Similarity=0.152 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhh--------hHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHHH
Q 023037 56 ALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRN--------YSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALE 127 (288)
Q Consensus 56 al~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka--------~~~k~i~~ild~~~~~~~~~~~~~~~~~~~~l~~i~ 127 (288)
+|.+=|.-++++|+|.+|...|++.+.-++..+.|. ..++.++-++-++.+.-= ..+..-.+++.|-+.+.
T Consensus 180 ~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L-~~~e~yevleh~seiL~ 258 (329)
T KOG0545|consen 180 VLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLL-KKEEYYEVLEHCSEILR 258 (329)
T ss_pred HHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHh-hHHHHHHHHHHHHHHHh
Confidence 456678889999999999999999999886666654 367777777776665421 11122333345555544
Q ss_pred HhhhhhhhHHhhhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHHHHHH
Q 023037 128 EAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMY 192 (288)
Q Consensus 128 ~a~ner~~f~~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE~~~y 192 (288)
-+-...+...|.|..+...=+-.+|..-++.+..+ |-...+..-=|.-++|-++.
T Consensus 259 ---~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l-------dpslasvVsrElr~le~r~~ 313 (329)
T KOG0545|consen 259 ---HHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL-------DPSLASVVSRELRLLENRMA 313 (329)
T ss_pred ---cCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc-------ChhhHHHHHHHHHHHHHHHH
Confidence 23344567778888888888888888888888888 55445566677777777764
No 196
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=83.72 E-value=2.5 Score=28.25 Aligned_cols=40 Identities=10% Similarity=0.189 Sum_probs=29.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Q 023037 58 KQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCIN 98 (288)
Q Consensus 58 ~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~ 98 (288)
..|++.|...|+++.|.+.+.+++.-- +.--+..+.++++
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~-~~~q~~eA~~LL~ 42 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG-DEAQRQEARALLA 42 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC-CHHHHHHHHHHHh
Confidence 468999999999999999999998543 3334555555544
No 197
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=83.55 E-value=2.5 Score=27.40 Aligned_cols=31 Identities=26% Similarity=0.266 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q 023037 56 ALKQTVKLYYRLGKYKEMMDAYREMLTYIKSA 87 (288)
Q Consensus 56 al~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~ 87 (288)
++..++..|...|+++++.+.|++.+... |.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~-P~ 33 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALD-PD 33 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cC
Confidence 56789999999999999999999998876 54
No 198
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=83.28 E-value=48 Score=32.43 Aligned_cols=191 Identities=14% Similarity=0.184 Sum_probs=113.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhh-----------hhhHHHHHHHHHHHhccCCC-cchhhHHHHHHHHHH
Q 023037 57 LKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVT-----------RNYSEKCINNIMDFVSGSAS-QNFSLLREFYQTTLK 124 (288)
Q Consensus 57 l~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~-----------ka~~~k~i~~ild~~~~~~~-~~~~~~~~~~~~~l~ 124 (288)
....+++...+|+++.+.+...+++..- +.-+ +.+....+-.+++.+++..- .+.+...-.-..+..
T Consensus 156 ~ltrarlll~~~d~~aA~~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~g 234 (400)
T COG3071 156 ELTRARLLLNRRDYPAARENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEG 234 (400)
T ss_pred HHHHHHHHHhCCCchhHHHHHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHH
Confidence 3456788888899988888887776654 3221 33344455556666665311 222233222233333
Q ss_pred HHHHhh----hhh--hh-----------HHhhhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHH
Q 023037 125 ALEEAK----NER--LW-----------FKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAI 187 (288)
Q Consensus 125 ~i~~a~----ner--~~-----------f~~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~l 187 (288)
.++.+. ++. .| -.+..-++.=+.+.|.+++|.+++.+..+.- -|. . +..+
T Consensus 235 lL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~------~D~---~----L~~~ 301 (400)
T COG3071 235 LLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQ------WDP---R----LCRL 301 (400)
T ss_pred HHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhc------cCh---h----HHHH
Confidence 333322 222 11 2455567777889999999999999988772 343 2 2222
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHhhhccCCChhHHHHHHhhcchhhhhhccHHHHHHHHHHHHh-------------hhhh
Q 023037 188 EIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFK-------------NYDE 254 (288)
Q Consensus 188 E~~~y~~~~n~~kak~~y~~A~~~a~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EaF~-------------~y~e 254 (288)
-.. ...+|..+......+..+---. .| .+-..-|.+++.++.|.+|.++|--|.+ .|+.
T Consensus 302 ~~~--l~~~d~~~l~k~~e~~l~~h~~--~p----~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~ 373 (400)
T COG3071 302 IPR--LRPGDPEPLIKAAEKWLKQHPE--DP----LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQ 373 (400)
T ss_pred Hhh--cCCCCchHHHHHHHHHHHhCCC--Ch----hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHH
Confidence 221 2346777777777766543222 15 5667778899999999999999988875 5666
Q ss_pred hCChhHHHHhHHHHH
Q 023037 255 AGNQRRIQCLKYLVL 269 (288)
Q Consensus 255 ~g~~~a~~~LKY~~L 269 (288)
.|+|..-....=-.|
T Consensus 374 ~g~~~~A~~~r~e~L 388 (400)
T COG3071 374 LGEPEEAEQVRREAL 388 (400)
T ss_pred cCChHHHHHHHHHHH
Confidence 787744443333333
No 199
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=82.36 E-value=36 Score=30.31 Aligned_cols=106 Identities=14% Similarity=0.159 Sum_probs=70.9
Q ss_pred cchhhHHHHHHHHHHHHHHhhhh-hhhHHhhhhHHHHHhhhcchhHH-------HHHHHHHHHhccCCCCCccccccchH
Q 023037 110 QNFSLLREFYQTTLKALEEAKNE-RLWFKTNLKLCKIWFDMGEYGRM-------SKILKELHKSCQREDGTDDQKKGSQL 181 (288)
Q Consensus 110 ~~~~~~~~~~~~~l~~i~~a~ne-r~~f~~~~kL~~lyl~~~~y~~~-------~~ll~elkk~~~~~~~~dDk~~~~~l 181 (288)
.+.+....-|.+++-+-+..+.. .....+.+|+|=+|-+.|+-..- .....+.-..-+.+ ..+.--
T Consensus 91 Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~------~~~~~~ 164 (214)
T PF09986_consen 91 RTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFP------IEGMDE 164 (214)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCC------CCCchH
Confidence 56667788888999888876633 46669999999999999995553 33333333332211 111222
Q ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhHH
Q 023037 182 LEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIM 221 (288)
Q Consensus 182 lEv~~lE~~~y~~~~n~~kak~~y~~A~~~a~~I~~p~i~ 221 (288)
.-+..+.+.++..+||+.+|+..+.+.....++-.-|++.
T Consensus 165 ~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~~~~l~ 204 (214)
T PF09986_consen 165 ATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASKEPKLK 204 (214)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCCcHHHH
Confidence 3466788888899999999888888876665544434443
No 200
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=81.98 E-value=1e+02 Score=35.20 Aligned_cols=192 Identities=16% Similarity=0.204 Sum_probs=118.9
Q ss_pred HHHHhhcCCc-cchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHH-----HHHHHHHHhccCCCcc
Q 023037 38 GFAEVVAMEP-EKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEK-----CINNIMDFVSGSASQN 111 (288)
Q Consensus 38 ~f~~ii~~~~-e~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k-----~i~~ild~~~~~~~~~ 111 (288)
-|.+.|..+| +..-|. +-..-..+.++.++|.+..++.|+-+ + .+..-+| ++-|+...++ +
T Consensus 1446 DferlvrssPNSSi~WI-----~YMaf~LelsEiekAR~iaerAL~tI-N--~REeeEKLNiWiA~lNlEn~yG-----~ 1512 (1710)
T KOG1070|consen 1446 DFERLVRSSPNSSILWI-----RYMAFHLELSEIEKARKIAERALKTI-N--FREEEEKLNIWIAYLNLENAYG-----T 1512 (1710)
T ss_pred HHHHHHhcCCCcchHHH-----HHHHHHhhhhhhHHHHHHHHHHhhhC-C--cchhHHHHHHHHHHHhHHHhhC-----c
Confidence 3444444444 456672 33444556777888888887777655 1 1222222 1222222222 1
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhhHHhhhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHHHHH
Q 023037 112 FSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQM 191 (288)
Q Consensus 112 ~~~~~~~~~~~l~~i~~a~ner~~f~~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE~~~ 191 (288)
.+.+.+.++.+-+ .---.++..+|+.+|-..+++++|.++++...+... +-.+|+..=+..
T Consensus 1513 eesl~kVFeRAcq-------ycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~------------q~~~vW~~y~~f 1573 (1710)
T KOG1070|consen 1513 EESLKKVFERACQ-------YCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG------------QTRKVWIMYADF 1573 (1710)
T ss_pred HHHHHHHHHHHHH-------hcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc------------chhhHHHHHHHH
Confidence 2233333333322 222347899999999999999999999999888743 224677777777
Q ss_pred HHhhcCHHHHHHHHHHHHhhhccCCChhHHHHHHhhcchhhhhhccHHHHHHHHHHHHhhhhhhCChhHHHHhHHHHHHH
Q 023037 192 YTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLAN 271 (288)
Q Consensus 192 y~~~~n~~kak~~y~~A~~~a~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EaF~~y~e~g~~~a~~~LKY~~L~~ 271 (288)
...++.-..|+.++..|+...-.--|-.++. ....|-+.-||=+.+.+.|-.-...| |+|+.. |+|..-
T Consensus 1574 Ll~~ne~~aa~~lL~rAL~~lPk~eHv~~Is----kfAqLEFk~GDaeRGRtlfEgll~ay-----PKRtDl--W~VYid 1642 (1710)
T KOG1070|consen 1574 LLRQNEAEAARELLKRALKSLPKQEHVEFIS----KFAQLEFKYGDAERGRTLFEGLLSAY-----PKRTDL--WSVYID 1642 (1710)
T ss_pred HhcccHHHHHHHHHHHHHhhcchhhhHHHHH----HHHHHHhhcCCchhhHHHHHHHHhhC-----ccchhH--HHHHHH
Confidence 7788888999999999998776655533332 23455677888888888876665544 666665 555444
Q ss_pred H
Q 023037 272 M 272 (288)
Q Consensus 272 i 272 (288)
|
T Consensus 1643 ~ 1643 (1710)
T KOG1070|consen 1643 M 1643 (1710)
T ss_pred H
Confidence 3
No 201
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=81.93 E-value=39 Score=30.46 Aligned_cols=82 Identities=13% Similarity=0.041 Sum_probs=69.9
Q ss_pred CHHHHHHHHHHHHhhhccCCChhHHHHHHhhcchhhhhhccHHHHHHHHHHHHhhhhhhCC-hhHHHHhHHHHHHHHhcC
Q 023037 197 NNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGN-QRRIQCLKYLVLANMLME 275 (288)
Q Consensus 197 n~~kak~~y~~A~~~a~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EaF~~y~e~g~-~~a~~~LKY~~L~~il~~ 275 (288)
......+++++|...-....++|+...|...-|.-|+..|||.+|..+|-..-..|-.-|= .-.-.+|..+.-|.-.++
T Consensus 153 hs~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~ 232 (247)
T PF11817_consen 153 HSKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLG 232 (247)
T ss_pred hHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC
Confidence 4455678899998888888889999999999999999999999999999999888887774 566778888888888776
Q ss_pred CCC
Q 023037 276 SEV 278 (288)
Q Consensus 276 ~~~ 278 (288)
+..
T Consensus 233 ~~~ 235 (247)
T PF11817_consen 233 DVE 235 (247)
T ss_pred CHH
Confidence 654
No 202
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=81.89 E-value=63 Score=32.81 Aligned_cols=122 Identities=19% Similarity=0.220 Sum_probs=82.9
Q ss_pred CCHHHHHHHHHHhhcCC--cc---ch-----------------hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Q 023037 30 TDPEGALAGFAEVVAME--PE---KA-----------------EWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSA 87 (288)
Q Consensus 30 ~d~~~Al~~f~~ii~~~--~e---~~-----------------~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~ 87 (288)
.+++.|+..|++++..- ++ .. ...+..-+.-|.-+++.|+|..++.+|++.+..- |.
T Consensus 312 ~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~ 390 (539)
T KOG0548|consen 312 EDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PE 390 (539)
T ss_pred HhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-Cc
Confidence 67778888888877531 10 11 1123344455888999999999999999988777 66
Q ss_pred hhhhhHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHHHHhhhhhhhHHhhhhHHHHHhhhcchhHHHHHHHHHHHh
Q 023037 88 VTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKS 165 (288)
Q Consensus 88 v~ka~~~k~i~~ild~~~~~~~~~~~~~~~~~~~~l~~i~~a~ner~~f~~~~kL~~lyl~~~~y~~~~~ll~elkk~ 165 (288)
-.+.|.-.+..= -.++ .....+.=|..+|+- +--|++-++|.|..+...++|+++.+.+++-...
T Consensus 391 Da~lYsNRAac~--~kL~--------~~~~aL~Da~~~ieL---~p~~~kgy~RKg~al~~mk~ydkAleay~eale~ 455 (539)
T KOG0548|consen 391 DARLYSNRAACY--LKLG--------EYPEALKDAKKCIEL---DPNFIKAYLRKGAALRAMKEYDKALEAYQEALEL 455 (539)
T ss_pred hhHHHHHHHHHH--HHHh--------hHHHHHHHHHHHHhc---CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 666655555432 1122 112222224444443 4567899999999999999999999999999888
No 203
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=81.65 E-value=7.3 Score=27.00 Aligned_cols=44 Identities=16% Similarity=0.288 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Q 023037 55 KALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMD 102 (288)
Q Consensus 55 kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild 102 (288)
.+++.++.-+++.|+|++|+++...+|..= |. |.-++.+..+++
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~e-P~---N~Qa~~L~~~i~ 45 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIE-PD---NRQAQSLKELIE 45 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TS----HHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhC-CC---cHHHHHHHHHHH
Confidence 368899999999999999999999998876 54 444555555444
No 204
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=81.35 E-value=39 Score=34.49 Aligned_cols=184 Identities=13% Similarity=0.115 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHH--------------HHHHHHHhhhhhhhHHHHHHHHHHHhccCCCcchh-------
Q 023037 55 KALKQTVKLYYRLGKYKEMMDAYR--------------EMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFS------- 113 (288)
Q Consensus 55 kal~~l~~l~~~~g~~~~~l~~~~--------------~~l~~~~~~v~ka~~~k~i~~ild~~~~~~~~~~~------- 113 (288)
-+|..++++|...| .+++..+.+ ++..+. ..+.+.+++...+++++++-. .....
T Consensus 100 mal~el~q~y~en~-n~~l~~lWer~ve~dfnDvv~~ReLa~~y-Ekik~sk~a~~f~Ka~yrfI~--~~q~~~i~evWe 175 (711)
T COG1747 100 MALLELLQCYKENG-NEQLYSLWERLVEYDFNDVVIGRELADKY-EKIKKSKAAEFFGKALYRFIP--RRQNAAIKEVWE 175 (711)
T ss_pred HHHHHHHHHHHhcC-chhhHHHHHHHHHhcchhHHHHHHHHHHH-HHhchhhHHHHHHHHHHHhcc--hhhhhhHHHHHH
Confidence 46677777777763 344444333 344445 446667777777777766532 11111
Q ss_pred --------hHHHHHHHHHHHHHHhhhhhhhHHhhhhHH-HHHhhhcchhHHHHHHHHHHHhccCCCC--------Ccccc
Q 023037 114 --------LLREFYQTTLKALEEAKNERLWFKTNLKLC-KIWFDMGEYGRMSKILKELHKSCQREDG--------TDDQK 176 (288)
Q Consensus 114 --------~~~~~~~~~l~~i~~a~ner~~f~~~~kL~-~lyl~~~~y~~~~~ll~elkk~~~~~~~--------~dDk~ 176 (288)
..+.++.+.++.-...+ ...+.+-+--. .-|-+..+|+++.+++..+.+.....-- =-|+-
T Consensus 176 KL~~~i~dD~D~fl~l~~kiqt~lg--~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd~y 253 (711)
T COG1747 176 KLPELIGDDKDFFLRLQKKIQTKLG--EGRGSVLMQDVYKKYSENENWTEAIRILKHILEHDEKDVWARKEIIENLRDKY 253 (711)
T ss_pred HHHHhccccHHHHHHHHHHHHHhhc--cchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHh
Confidence 22223333222211111 11112222222 3455778899999999988777111000 01233
Q ss_pred ccchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhc--cCCC-hhHHHHHHhhc----------chhhhhhccHHHHHH
Q 023037 177 KGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKS--AIPH-PRIMGIIRECG----------GKMHMAERQWADAAT 243 (288)
Q Consensus 177 ~~~~llEv~~lE~~~y~~~~n~~kak~~y~~A~~~a~--~I~~-p~i~a~I~~~~----------G~l~~~ekdy~~A~s 243 (288)
||.--+|-|+-.+.+-..-+|+..+--=+.+-+-.+. =++| ---.|+|+-.+ |++ ++.=-|++|++
T Consensus 254 ~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m~f~eGnFVfHqtWgVG~i~~VsfqqkvlidF~~~r-ah~I~femA~s 332 (711)
T COG1747 254 RGHSQLEEYLKISNISQSGRNFFEALNDFEKLMHFDEGNFVFHQTWGVGEIMGVSFQQKVLIDFEGRR-AHDISFEMAFS 332 (711)
T ss_pred ccchhHHHHHHhcchhhccccHHHHHHHHHHHheeccCceEEecccccceeeecccccceeeeehhhh-hhhhhHHHHHH
Confidence 5555677788888887777888877776766665554 4777 44444444322 444 44445566655
Q ss_pred HH
Q 023037 244 DF 245 (288)
Q Consensus 244 yF 245 (288)
-+
T Consensus 333 aL 334 (711)
T COG1747 333 AL 334 (711)
T ss_pred Hh
Confidence 43
No 205
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=80.96 E-value=49 Score=31.01 Aligned_cols=137 Identities=18% Similarity=0.238 Sum_probs=89.4
Q ss_pred cCCCCHHHHHHHHHHhhcCCc-cchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhh---hhhhHHHHHHHHHH
Q 023037 27 LVETDPEGALAGFAEVVAMEP-EKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAV---TRNYSEKCINNIMD 102 (288)
Q Consensus 27 ~~~~d~~~Al~~f~~ii~~~~-e~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v---~ka~~~k~i~~ild 102 (288)
..+.+++..+.-.+.-+..+| +..+| -.||.+|..+|+++.+..-|++...+- +.- --.+++-.+
T Consensus 133 ~~~~~~~~l~a~Le~~L~~nP~d~egW-----~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~----- 201 (287)
T COG4235 133 PAEQEMEALIARLETHLQQNPGDAEGW-----DLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALY----- 201 (287)
T ss_pred CCcccHHHHHHHHHHHHHhCCCCchhH-----HHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-----
Confidence 345567888888888888887 46778 579999999999999999999998877 532 122222222
Q ss_pred HhccCCCcchhhHHHHHHHHHHHHHHhhhhhhhHHhhhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHH
Q 023037 103 FVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLL 182 (288)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~l~~i~~a~ner~~f~~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~ll 182 (288)
++..+. .....+..+. +.+.- +.--.+...=||.-++++|+|.++....+.+.+..+.. +.- ..++
T Consensus 202 -~~a~~~-~ta~a~~ll~---~al~~---D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~---~~r---r~~i 267 (287)
T COG4235 202 -YQAGQQ-MTAKARALLR---QALAL---DPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPAD---DPR---RSLI 267 (287)
T ss_pred -HhcCCc-ccHHHHHHHH---HHHhc---CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCC---Cch---HHHH
Confidence 222121 1112233333 22221 22233556679999999999999999999999996653 333 5555
Q ss_pred HHHHHH
Q 023037 183 EVYAIE 188 (288)
Q Consensus 183 Ev~~lE 188 (288)
|-...+
T Consensus 268 e~~ia~ 273 (287)
T COG4235 268 ERSIAR 273 (287)
T ss_pred HHHHHH
Confidence 554443
No 206
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=80.22 E-value=8.3 Score=38.30 Aligned_cols=71 Identities=11% Similarity=0.010 Sum_probs=56.3
Q ss_pred hhHHhhhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhc
Q 023037 134 LWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKS 213 (288)
Q Consensus 134 ~~f~~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE~~~y~~~~n~~kak~~y~~A~~~a~ 213 (288)
......+++|..|+..|+|++|...+++...+-+ ++. -.-..|..-+-.|..++++.+|.+.|.+|+.+.+
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~P-----d~a----eA~~A~yNLAcaya~LGr~dEAla~LrrALelsn 143 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNP-----NPD----EAQAAYYNKACCHAYREEGKKAADCLRTALRDYN 143 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-----Cch----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 3346678999999999999999999999988832 221 0012478888999999999999999999998744
No 207
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=79.68 E-value=12 Score=36.56 Aligned_cols=105 Identities=17% Similarity=0.163 Sum_probs=81.0
Q ss_pred HHHHHhhhcchhHHHHHHHHHHHhccCCCCCccc---cccchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCh
Q 023037 142 LCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQ---KKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP 218 (288)
Q Consensus 142 L~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk---~~~~~llEv~~lE~~~y~~~~n~~kak~~y~~A~~~a~~I~~p 218 (288)
-|+.|+..|+|..|..-+....+++....+.|+. .-....+=+|+.-+-.|.+++.+.+|....++++.+.+.
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~---- 289 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPN---- 289 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC----
Confidence 4678888888888888888877777755554442 333666889999999999999999999999999877653
Q ss_pred hHHHHHHhhcchhhhhhccHHHHHHHHHHHHhhh
Q 023037 219 RIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (288)
Q Consensus 219 ~i~a~I~~~~G~l~~~ekdy~~A~syF~EaF~~y 252 (288)
-+-|- ..-|..|+..++|+.|..+|-.+.+-.
T Consensus 290 N~KAL--yRrG~A~l~~~e~~~A~~df~ka~k~~ 321 (397)
T KOG0543|consen 290 NVKAL--YRRGQALLALGEYDLARDDFQKALKLE 321 (397)
T ss_pred chhHH--HHHHHHHHhhccHHHHHHHHHHHHHhC
Confidence 22232 234888999999999999999998754
No 208
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=79.42 E-value=3.8 Score=22.37 Aligned_cols=29 Identities=31% Similarity=0.574 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 023037 55 KALKQTVKLYYRLGKYKEMMDAYREMLTY 83 (288)
Q Consensus 55 kal~~l~~l~~~~g~~~~~l~~~~~~l~~ 83 (288)
.++..++.++...|+++++...+++.+..
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 35678999999999999999999888754
No 209
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=79.08 E-value=86 Score=32.69 Aligned_cols=132 Identities=11% Similarity=0.224 Sum_probs=78.0
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHH-----------
Q 023037 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCI----------- 97 (288)
Q Consensus 29 ~~d~~~Al~~f~~ii~~~~e~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i----------- 97 (288)
+.++++||+.|+..+..+++..+ -++.|+-+-.+.|+++..++.=.+++... +..--+.+.=++
T Consensus 88 dK~Y~eaiKcy~nAl~~~~dN~q----ilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A 162 (700)
T KOG1156|consen 88 DKKYDEAIKCYRNALKIEKDNLQ----ILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMA 162 (700)
T ss_pred hhhHHHHHHHHHHHHhcCCCcHH----HHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHH
Confidence 56889999999999999876433 45678888889999999888777777665 432222222221
Q ss_pred HHHHHHhccC----CC-cchhhHHHHHHHHHHHHHH----------hhhhhhhH---HhhhhHHHHHhhhcchhHHHHHH
Q 023037 98 NNIMDFVSGS----AS-QNFSLLREFYQTTLKALEE----------AKNERLWF---KTNLKLCKIWFDMGEYGRMSKIL 159 (288)
Q Consensus 98 ~~ild~~~~~----~~-~~~~~~~~~~~~~l~~i~~----------a~ner~~f---~~~~kL~~lyl~~~~y~~~~~ll 159 (288)
+.|++.+... ++ .+.+..+-+.-.....++. ..+++-.+ ......+.+++..+++.+|..++
T Consensus 163 ~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y 242 (700)
T KOG1156|consen 163 LEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVY 242 (700)
T ss_pred HHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHH
Confidence 2233333322 11 1222222222222222221 11334444 55667788888888888888888
Q ss_pred HHHHHh
Q 023037 160 KELHKS 165 (288)
Q Consensus 160 ~elkk~ 165 (288)
+.|..-
T Consensus 243 ~~Ll~r 248 (700)
T KOG1156|consen 243 RRLLER 248 (700)
T ss_pred HHHHhh
Confidence 888766
No 210
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=78.75 E-value=10 Score=37.73 Aligned_cols=86 Identities=19% Similarity=0.237 Sum_probs=67.3
Q ss_pred chhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhHHHHHHhhcch
Q 023037 151 EYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGK 230 (288)
Q Consensus 151 ~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE~~~y~~~~n~~kak~~y~~A~~~a~~I~~p~i~a~I~~~~G~ 230 (288)
....+.++|.+..+.-++ +.+ ....+++++...+|..+|.+.|..|...++. -|.+.....---|-
T Consensus 248 ~~~~a~~lL~~~~~~yP~----------s~l--fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~--~~Ql~~l~~~El~w 313 (468)
T PF10300_consen 248 PLEEAEELLEEMLKRYPN----------SAL--FLFFEGRLERLKGNLEEAIESFERAIESQSE--WKQLHHLCYFELAW 313 (468)
T ss_pred CHHHHHHHHHHHHHhCCC----------cHH--HHHHHHHHHHHhcCHHHHHHHHHHhccchhh--HHhHHHHHHHHHHH
Confidence 344589999998887442 222 2567899999999999999999998843322 37788888888899
Q ss_pred hhhhhccHHHHHHHHHHHHh
Q 023037 231 MHMAERQWADAATDFFEAFK 250 (288)
Q Consensus 231 l~~~ekdy~~A~syF~EaF~ 250 (288)
.|+...||+.|..+|..-.+
T Consensus 314 ~~~~~~~w~~A~~~f~~L~~ 333 (468)
T PF10300_consen 314 CHMFQHDWEEAAEYFLRLLK 333 (468)
T ss_pred HHHHHchHHHHHHHHHHHHh
Confidence 99999999999988877654
No 211
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=78.68 E-value=8.5 Score=34.28 Aligned_cols=52 Identities=21% Similarity=0.132 Sum_probs=41.1
Q ss_pred HHHHHHHHHhhcCCcc--chhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 023037 33 EGALAGFAEVVAMEPE--KAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (288)
Q Consensus 33 ~~Al~~f~~ii~~~~e--~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~ 84 (288)
..|++.|.+.+..+.. .+--....++-+|.++++.|++++|+.++..++..-
T Consensus 142 ~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 142 RKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 4788899998876542 222246788899999999999999999998886654
No 212
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=78.58 E-value=66 Score=31.06 Aligned_cols=89 Identities=7% Similarity=0.107 Sum_probs=68.5
Q ss_pred cchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCC--hhHHHHHHhh
Q 023037 150 GEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH--PRIMGIIREC 227 (288)
Q Consensus 150 ~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE~~~y~~~~n~~kak~~y~~A~~~a~~I~~--p~i~a~I~~~ 227 (288)
++.+++.+.+.++....... +++ .-.+-++.-+++.+...|++..+|..+.....+-.++.. |++-+.-...
T Consensus 89 ~D~~~al~~Le~i~~~~~~~---~e~---~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~l 162 (380)
T KOG2908|consen 89 SDKDEALEFLEKIIEKLKEY---KEP---DAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYSL 162 (380)
T ss_pred ccHHHHHHHHHHHHHHHHhh---ccc---hhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHHH
Confidence 35667777777776665543 454 556677777888899999999999999999987776665 5599999999
Q ss_pred cchhhhhhccHHHHHHH
Q 023037 228 GGKMHMAERQWADAATD 244 (288)
Q Consensus 228 ~G~l~~~ekdy~~A~sy 244 (288)
|-+.|-.-+||..+|..
T Consensus 163 ssqYyk~~~d~a~yYr~ 179 (380)
T KOG2908|consen 163 SSQYYKKIGDFASYYRH 179 (380)
T ss_pred HHHHHHHHHhHHHHHHH
Confidence 99988888888765543
No 213
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=78.38 E-value=57 Score=33.01 Aligned_cols=61 Identities=18% Similarity=0.088 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhHHHHHHhhcchhhhhhccHHHHHHHHHHHHh
Q 023037 183 EVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFK 250 (288)
Q Consensus 183 Ev~~lE~~~y~~~~n~~kak~~y~~A~~~a~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EaF~ 250 (288)
.+|..-+-++...+++..|.+++.+|.... |. +.-...-|+++...|+++.|...|.+||+
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~-----ps--~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDLE-----MS--WLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----CC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455555556666789999999999988877 43 34556779999999999999999999986
No 214
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=78.27 E-value=26 Score=33.04 Aligned_cols=97 Identities=16% Similarity=0.165 Sum_probs=67.7
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh--h-hhhhHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHHHH
Q 023037 52 WGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSA--V-TRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEE 128 (288)
Q Consensus 52 ~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~--v-~ka~~~k~i~~ild~~~~~~~~~~~~~~~~~~~~l~~i~~ 128 (288)
-....|+.=|.=..+.++|++|++.|++.+.+. +. | --|+++--.+ ++ ..+..++-|+.+|.
T Consensus 79 ~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~-----Lg--------~~~~AVkDce~Al~- 143 (304)
T KOG0553|consen 79 ALAESLKNEGNKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSK-----LG--------EYEDAVKDCESALS- 143 (304)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHH-----hc--------chHHHHHHHHHHHh-
Confidence 356677888888889999999999999999888 53 2 1222221111 11 23344444555444
Q ss_pred hhhhhhhHHhhhhHHHHHhhhcchhHHHHHHHHHHHh
Q 023037 129 AKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKS 165 (288)
Q Consensus 129 a~ner~~f~~~~kL~~lyl~~~~y~~~~~ll~elkk~ 165 (288)
-+-...|...||+..|+..|+|.+|.+-+++...+
T Consensus 144 --iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLel 178 (304)
T KOG0553|consen 144 --IDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALEL 178 (304)
T ss_pred --cChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhcc
Confidence 34556789999999999999999998888777776
No 215
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=77.38 E-value=86 Score=31.74 Aligned_cols=128 Identities=13% Similarity=0.112 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHHHHhhh---hhhhHHhhhhHHHHH
Q 023037 70 YKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKN---ERLWFKTNLKLCKIW 146 (288)
Q Consensus 70 ~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~~~~~~~~~~~~~~~~~~~~l~~i~~a~n---er~~f~~~~kL~~ly 146 (288)
.+.+.+++++.+..= |....+.+..++....-.- -.+. + +..+..+.+.++.+-. .-...++..-++-.+
T Consensus 358 ~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~-~~~~-~----~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~ 430 (517)
T PRK10153 358 LNKASDLLEEILKSE-PDFTYAQAEKALADIVRHS-QQPL-D----EKQLAALSTELDNIVALPELNVLPRIYEILAVQA 430 (517)
T ss_pred HHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHh-cCCc-c----HHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHH
Confidence 667778888888877 7777777776664422211 1110 0 1122223333222111 222235555667788
Q ss_pred hhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCC
Q 023037 147 FDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH 217 (288)
Q Consensus 147 l~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE~~~y~~~~n~~kak~~y~~A~~~a~~I~~ 217 (288)
+..|++++|...+++...+ +. + .+.|.+-+++|...|+..+|.+.|.+|..+...-+.
T Consensus 431 ~~~g~~~~A~~~l~rAl~L-------~p----s--~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 431 LVKGKTDEAYQAINKAIDL-------EM----S--WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred HhcCCHHHHHHHHHHHHHc-------CC----C--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 8899999999999998888 32 2 469999999999999999999999999988877654
No 216
>COG5071 RPN5 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=77.35 E-value=69 Score=30.64 Aligned_cols=192 Identities=11% Similarity=0.100 Sum_probs=129.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHHHHhhhhh
Q 023037 54 FKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNER 133 (288)
Q Consensus 54 ~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~~~~~~~~~~~~~~~~~~~~l~~i~~a~ner 133 (288)
-+-+..++.++++.|+++++-+..+.+ +.- --..|+...-.|-.+.++.-.+. +..+..-+.+.....+ +.
T Consensus 52 ~kvl~~i~dLl~S~~~~~~Lneql~~L-~kK-hGQlk~sI~~MIq~vmEylKg~~--dl~t~i~~ietlr~Vt-----Eg 122 (439)
T COG5071 52 TKVLIYIADLLFSAGDFQGLNEQLVSL-FKK-HGQLKQSITSMIQHVMEYLKGID--DLKTKINLIETLRTVT-----EG 122 (439)
T ss_pred HHHHHHHHHHHhhcCchhhhhhHHHHH-HHH-cchHHHHHHHHHHHHHHhccCcc--cccchHhHHHHHHHHh-----cC
Confidence 456778889999999999877765433 222 22456666666777777766554 2446666666555543 34
Q ss_pred hhH------HhhhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHHHHHHHhhcCHHHHHHHHHH
Q 023037 134 LWF------KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQK 207 (288)
Q Consensus 134 ~~f------~~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE~~~y~~~~n~~kak~~y~~ 207 (288)
++| ++.--|...+-+.|+...|..++=++ |-.+-..++-+-.+...+-+.+++...+++.+|--.-.+
T Consensus 123 kIFvEvERariT~~L~~ikee~Gdi~sA~Dilcn~------pVETygs~~~Sekv~fiLEQ~rL~vl~~Dy~~A~~~~kK 196 (439)
T COG5071 123 KIFVEVERARLTQLLSQIKEEQGDIKSAQDILCNE------PVETYGSFDLSEKVAFILEQVRLFLLRSDYYMASTYTKK 196 (439)
T ss_pred ceEEehhHHHHHHHHHHHHHHhcchhHHHHHHhcC------chhhccchhHHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 444 44556778888888888887765433 211111112244566667778888888999998887777
Q ss_pred HHhhhccCCC-hhHHHHHHhhcchhhhhhccHHHHHHHHHHHHhhhhhhCChhH
Q 023037 208 ALAIKSAIPH-PRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRR 260 (288)
Q Consensus 208 A~~~a~~I~~-p~i~a~I~~~~G~l~~~ekdy~~A~syF~EaF~~y~e~g~~~a 260 (288)
.++---.-++ ..+--.-.+.--++|.+++.|-.|..|+-+-+....-.|+|..
T Consensus 197 I~KK~Fe~~d~~slKlkyYeL~V~i~Lh~R~Yl~v~~y~~~vY~t~~~~~d~Ak 250 (439)
T COG5071 197 INKKFFEKEDVQSLKLKYYELKVRIGLHDRAYLDVCKYYRAVYDTAVVQEDPAK 250 (439)
T ss_pred HHHHHhccccHHHHHHHHHHHhheeecccHHHHHHHHHHHHHHHHHHhccCccc
Confidence 7766555555 5555667778888999999999999999988777777777643
No 217
>PRK15331 chaperone protein SicA; Provisional
Probab=77.35 E-value=26 Score=30.21 Aligned_cols=93 Identities=14% Similarity=0.051 Sum_probs=72.7
Q ss_pred hHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhH
Q 023037 141 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRI 220 (288)
Q Consensus 141 kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE~~~y~~~~n~~kak~~y~~A~~~a~~I~~p~i 220 (288)
..|.-++++|+|++|..+.+=|--+-. -+ -+.+.--+-+|..++++.+|-.+|.-|-.+...=|.|
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d~-----~n-------~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p-- 107 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYDF-----YN-------PDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRP-- 107 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCc-----Cc-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCc--
Confidence 455567899999999999998877611 12 2455666788899999999999999998877544444
Q ss_pred HHHHHhhcchhhhhhccHHHHHHHHHHHHhh
Q 023037 221 MGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (288)
Q Consensus 221 ~a~I~~~~G~l~~~ekdy~~A~syF~EaF~~ 251 (288)
-..+|.-|+..||-..|...|.-+.++
T Consensus 108 ----~f~agqC~l~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 108 ----VFFTGQCQLLMRKAAKARQCFELVNER 134 (165)
T ss_pred ----cchHHHHHHHhCCHHHHHHHHHHHHhC
Confidence 366788889999999999999988883
No 218
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=75.95 E-value=4.5 Score=23.33 Aligned_cols=27 Identities=19% Similarity=0.559 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 023037 56 ALKQTVKLYYRLGKYKEMMDAYREMLT 82 (288)
Q Consensus 56 al~~l~~l~~~~g~~~~~l~~~~~~l~ 82 (288)
++..+...|.+.|+++++.+.++++..
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhH
Confidence 356788999999999999999998754
No 219
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=75.67 E-value=54 Score=35.01 Aligned_cols=149 Identities=15% Similarity=0.215 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHH---HHhhh
Q 023037 55 KALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKAL---EEAKN 131 (288)
Q Consensus 55 kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~~~~~~~~~~~~~~~~~~~~l~~i---~~a~n 131 (288)
.-+-..|.+|-+..++++++++|+.--.|. ..+.-++.+- |. ..-.+++-.-.-++.+ +-+-|
T Consensus 662 elydkagdlfeki~d~dkale~fkkgdaf~-kaielarfaf------------p~-evv~lee~wg~hl~~~~q~daain 727 (1636)
T KOG3616|consen 662 ELYDKAGDLFEKIHDFDKALECFKKGDAFG-KAIELARFAF------------PE-EVVKLEEAWGDHLEQIGQLDAAIN 727 (1636)
T ss_pred HHHHhhhhHHHHhhCHHHHHHHHHcccHHH-HHHHHHHhhC------------cH-HHhhHHHHHhHHHHHHHhHHHHHH
Confidence 344567889999999999999999887777 3332222111 10 0001111111111111 12223
Q ss_pred hhhhHHhhhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhh
Q 023037 132 ERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAI 211 (288)
Q Consensus 132 er~~f~~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE~~~y~~~~n~~kak~~y~~A~~~ 211 (288)
.-.-.++.+|-+..-+..+++.++..++..+..- +..+ -.|....+-|...+++..|-++|+.+-..
T Consensus 728 hfiea~~~~kaieaai~akew~kai~ildniqdq---------k~~s----~yy~~iadhyan~~dfe~ae~lf~e~~~~ 794 (1636)
T KOG3616|consen 728 HFIEANCLIKAIEAAIGAKEWKKAISILDNIQDQ---------KTAS----GYYGEIADHYANKGDFEIAEELFTEADLF 794 (1636)
T ss_pred HHHHhhhHHHHHHHHhhhhhhhhhHhHHHHhhhh---------cccc----ccchHHHHHhccchhHHHHHHHHHhcchh
Confidence 3333366777788888889999998888776322 2222 23566678888999999999999998554
Q ss_pred hccCCChhHHHHHHhhcchhhhhhccHHHHHHH
Q 023037 212 KSAIPHPRIMGIIRECGGKMHMAERQWADAATD 244 (288)
Q Consensus 212 a~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~sy 244 (288)
.-+| + ||-.-+.|..|+..
T Consensus 795 ~dai---------~-----my~k~~kw~da~kl 813 (1636)
T KOG3616|consen 795 KDAI---------D-----MYGKAGKWEDAFKL 813 (1636)
T ss_pred HHHH---------H-----HHhccccHHHHHHH
Confidence 4433 2 35567788776544
No 220
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=75.50 E-value=6.2 Score=23.07 Aligned_cols=28 Identities=18% Similarity=0.502 Sum_probs=25.0
Q ss_pred hhhHHHHHhhhcchhHHHHHHHHHHHhc
Q 023037 139 NLKLCKIWFDMGEYGRMSKILKELHKSC 166 (288)
Q Consensus 139 ~~kL~~lyl~~~~y~~~~~ll~elkk~~ 166 (288)
..++|.+|...|++++|...++++.+..
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 4689999999999999999999998764
No 221
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=74.42 E-value=72 Score=29.40 Aligned_cols=126 Identities=13% Similarity=0.177 Sum_probs=91.2
Q ss_pred hhhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHHHHHHH-----hhcCHHHHHHHHHHHHhhh
Q 023037 138 TNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYT-----ETKNNKKLKQLYQKALAIK 212 (288)
Q Consensus 138 ~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE~~~y~-----~~~n~~kak~~y~~A~~~a 212 (288)
+.+-++..++..++|+.|...+.+-.+.-+..+ +- . .++-+-+..++ ..+|..-+++++.+..++-
T Consensus 73 a~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~---n~---d---Y~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i 143 (254)
T COG4105 73 AQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHP---NA---D---YAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELV 143 (254)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCC---Ch---h---HHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHH
Confidence 456678889999999999999999999866553 22 3 33444444443 3357788999998887776
Q ss_pred ccC----CChhHH----------HHHHhhcchhhhhhccHHHHHHHHHHHHhhhhhhCChhHHHHhHHHHHHHHhc
Q 023037 213 SAI----PHPRIM----------GIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLANMLM 274 (288)
Q Consensus 213 ~~I----~~p~i~----------a~I~~~~G~l~~~ekdy~~A~syF~EaF~~y~e~g~~~a~~~LKY~~L~~il~ 274 (288)
..= |.|-.+ |.-.+.-|+.|...|.|--|...|-+-.++|... +....+|.+|.-+-..+
T Consensus 144 ~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t--~~~~eaL~~l~eaY~~l 217 (254)
T COG4105 144 QRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDT--SAVREALARLEEAYYAL 217 (254)
T ss_pred HHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccc--cchHHHHHHHHHHHHHh
Confidence 544 444333 4456778999999999999999999999999754 45556788887665443
No 222
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=74.12 E-value=48 Score=29.86 Aligned_cols=80 Identities=19% Similarity=0.255 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHhhhhhhhHHhhhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHHHHHHHhh
Q 023037 116 REFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTET 195 (288)
Q Consensus 116 ~~~~~~~l~~i~~a~ner~~f~~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE~~~y~~~ 195 (288)
...++.+.+.++..+..|..-.+...+|.-|+..|+|++|.++++.+......+ .=. .++-++...=.+.+..+
T Consensus 158 I~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~e---gW~---~l~~~~l~~l~~Ca~~~ 231 (247)
T PF11817_consen 158 IELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRRE---GWW---SLLTEVLWRLLECAKRL 231 (247)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhC---CcH---HHHHHHHHHHHHHHHHh
Confidence 344445555555555667777999999999999999999999999996664432 112 45555555556666666
Q ss_pred cCHHHH
Q 023037 196 KNNKKL 201 (288)
Q Consensus 196 ~n~~ka 201 (288)
+|....
T Consensus 232 ~~~~~~ 237 (247)
T PF11817_consen 232 GDVEDY 237 (247)
T ss_pred CCHHHH
Confidence 766543
No 223
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=73.90 E-value=6.9 Score=25.26 Aligned_cols=30 Identities=13% Similarity=0.215 Sum_probs=26.7
Q ss_pred hhhhHHHHHhhhcchhHHHHHHHHHHHhcc
Q 023037 138 TNLKLCKIWFDMGEYGRMSKILKELHKSCQ 167 (288)
Q Consensus 138 ~~~kL~~lyl~~~~y~~~~~ll~elkk~~~ 167 (288)
+...+|..|.+.|++++|..+++++.+..+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P 32 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDP 32 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 456799999999999999999999999844
No 224
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=73.42 E-value=1.3e+02 Score=33.17 Aligned_cols=71 Identities=13% Similarity=0.072 Sum_probs=41.5
Q ss_pred hhhhHHhhhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Q 023037 132 ERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKAL 209 (288)
Q Consensus 132 er~~f~~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE~~~y~~~~n~~kak~~y~~A~ 209 (288)
.++-|+.-.||..+.+.....+.+..-.++...--....+-+|+.|+. .|++.|...+-.-+++..|....
T Consensus 150 N~~k~~a~~rl~Qi~l~~~~wei~k~S~q~~lynq~~n~~l~D~irse-------~e~~ly~~~~m~l~~kkh~~~ri 220 (1238)
T KOG1127|consen 150 NPKKFWAFCRLGQIQLHQKKWEIAKQSLQHALYNQPTNSDLWDKIRSE-------AEGLLYQRLGMFLAAKKHYGRRI 220 (1238)
T ss_pred CHHHHHhhCchHHHHhhhhhHHHHhcCHHHHHhcchhhhcchhhcchh-------HHHHHHHHhhhhHhhhhhHHHHH
Confidence 367778888999999988888876544444443323222335654332 34555555555555555555544
No 225
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=71.90 E-value=6.1 Score=22.79 Aligned_cols=23 Identities=17% Similarity=0.069 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHH
Q 023037 56 ALKQTVKLYYRLGKYKEMMDAYR 78 (288)
Q Consensus 56 al~~l~~l~~~~g~~~~~l~~~~ 78 (288)
+...++.++..+|+++++...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 56789999999999999998875
No 226
>TIGR01716 RGG_Cterm transcriptional activator, Rgg/GadR/MutR family, C-terminal domain. This model describes the whole, except for a 60 residue N-terminal helix-turn-helix DNA-binding domain (PFAM pfam01381) of the family of proteins related to the transcriptional regulator Rgg, also called RopB. Rgg is required for secretion of several proteins, including a cysteine proteinase associated with virulence. GadR is a positive regulator of a glutamate-dependent acid resistance mechanism. MutR is a transcriptional activator for mutacin biosynthesis genes in Streptococcus mutans. This family appears restricted to the low-GC Gram-positive bacteria, including at least eight members in Lactococcus lactis.
Probab=71.88 E-value=54 Score=28.40 Aligned_cols=82 Identities=13% Similarity=0.175 Sum_probs=51.2
Q ss_pred hhhhhHHhhhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHh
Q 023037 131 NERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALA 210 (288)
Q Consensus 131 ner~~f~~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE~~~y~~~~n~~kak~~y~~A~~ 210 (288)
+.++.+.+-++....++++++++.|..++..+++... ++ ++- -.-+-+...++-+.+..|+..+.++-..++..
T Consensus 123 ~~~~i~~il~N~~~~~i~~~~~~~a~~~l~~l~~l~~-~~--~~~---~~ki~~~f~~~l~~y~~g~~~~~~~~i~~~i~ 196 (220)
T TIGR01716 123 YRRRVIQLLLNIAVLLIEKNEFSYAQYFLEKLEKILD-PE--DDL---YERILFNFLKGIILYKEGQKESGEEKIEQAIE 196 (220)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-hh--hhH---HHHHHHHHHHHHHHHHcCCCcccHHHHHHHHH
Confidence 4456669999999999999999999999999998842 20 111 11133344444444455655555555555555
Q ss_pred hhccCCCh
Q 023037 211 IKSAIPHP 218 (288)
Q Consensus 211 ~a~~I~~p 218 (288)
+-....+|
T Consensus 197 ~l~~lg~~ 204 (220)
T TIGR01716 197 IFDELGYP 204 (220)
T ss_pred HHHHcCCH
Confidence 44444443
No 227
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=71.81 E-value=8.6 Score=22.40 Aligned_cols=27 Identities=19% Similarity=0.452 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 023037 56 ALKQTVKLYYRLGKYKEMMDAYREMLT 82 (288)
Q Consensus 56 al~~l~~l~~~~g~~~~~l~~~~~~l~ 82 (288)
++..++..|.+.|+++++.+++.++..
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 356788999999999999999988754
No 228
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=71.56 E-value=1.4e+02 Score=31.66 Aligned_cols=133 Identities=18% Similarity=0.274 Sum_probs=92.9
Q ss_pred hhhhhH---HhhhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHHHHHHHhhcCHHHHHHHHHH
Q 023037 131 NERLWF---KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQK 207 (288)
Q Consensus 131 ner~~f---~~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE~~~y~~~~n~~kak~~y~~ 207 (288)
+.+.|. ++.+-.+.+++..++-+++-.+|.|..+.+ .+..-+|-+-+..+-..++...|+++|..
T Consensus 642 ~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~------------~l~~~~~~~~G~~~~~~~~~~EA~~af~~ 709 (799)
T KOG4162|consen 642 PDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID------------PLSASVYYLRGLLLEVKGQLEEAKEAFLV 709 (799)
T ss_pred CCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc------------hhhHHHHHHhhHHHHHHHhhHHHHHHHHH
Confidence 344454 455567778888888888999999999983 45578888889999999999999999999
Q ss_pred HHhhhcc-CCChhHHHHHHhhcchhhhhhccHHHHHHHHHHHHh--------------hhhhhCC-hhHHHHhHHHHHHH
Q 023037 208 ALAIKSA-IPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFK--------------NYDEAGN-QRRIQCLKYLVLAN 271 (288)
Q Consensus 208 A~~~a~~-I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EaF~--------------~y~e~g~-~~a~~~LKY~~L~~ 271 (288)
|+.+.-. +++-.-.|.+.+.+| +..-.++.+-..+|.+ -|...|| .++..|+-+- -
T Consensus 710 Al~ldP~hv~s~~Ala~~lle~G-----~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa---~ 781 (799)
T KOG4162|consen 710 ALALDPDHVPSMTALAELLLELG-----SPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAA---L 781 (799)
T ss_pred HHhcCCCCcHHHHHHHHHHHHhC-----CcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHH---H
Confidence 9998874 444777888888888 3344444445555543 1223565 4677775552 2
Q ss_pred Hhc-CCCCCCCCC
Q 023037 272 MLM-ESEVNPFDG 283 (288)
Q Consensus 272 il~-~~~~dpF~s 283 (288)
.|. .+|+-||.+
T Consensus 782 qLe~S~PV~pFs~ 794 (799)
T KOG4162|consen 782 QLEESNPVLPFSN 794 (799)
T ss_pred hhccCCCcccccc
Confidence 332 567777754
No 229
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=70.68 E-value=1.3e+02 Score=30.88 Aligned_cols=121 Identities=15% Similarity=0.102 Sum_probs=90.7
Q ss_pred hhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCh
Q 023037 139 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP 218 (288)
Q Consensus 139 ~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE~~~y~~~~n~~kak~~y~~A~~~a~~I~~p 218 (288)
..-+|-+.+..+.|.+|...++..+...+... .++ ...-=....-+-+|.+++.+..|...|++|+..... .+
T Consensus 417 ~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~--~e~---~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k--~~ 489 (611)
T KOG1173|consen 417 LHELGVVAYTYEEYPEALKYFQKALEVIKSVL--NEK---IFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPK--DA 489 (611)
T ss_pred hhhhhheeehHhhhHHHHHHHHHHHHHhhhcc--ccc---cchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCC--ch
Confidence 45677888889999999888888875544331 222 356667888999999999999999999999876421 25
Q ss_pred hHHHHHHhhcchhhhhhccHHHHHHHHHHHHhhhhhhCChhHHHHhHHHHHHHH
Q 023037 219 RIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLANM 272 (288)
Q Consensus 219 ~i~a~I~~~~G~l~~~ekdy~~A~syF~EaF~~y~e~g~~~a~~~LKY~~L~~i 272 (288)
++-+.| |-+|...|+.+.|.++|-+|+-. .-.+.-..++||-+|-.+-
T Consensus 490 ~~~asi----g~iy~llgnld~Aid~fhKaL~l--~p~n~~~~~lL~~aie~~~ 537 (611)
T KOG1173|consen 490 STHASI----GYIYHLLGNLDKAIDHFHKALAL--KPDNIFISELLKLAIEDSE 537 (611)
T ss_pred hHHHHH----HHHHHHhcChHHHHHHHHHHHhc--CCccHHHHHHHHHHHHhhh
Confidence 555544 88999999999999999999753 2345678888997666533
No 230
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.98 E-value=43 Score=35.81 Aligned_cols=52 Identities=15% Similarity=0.367 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh--hhhhhHHHHHHHHHHHh
Q 023037 53 GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSA--VTRNYSEKCINNIMDFV 104 (288)
Q Consensus 53 ~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~--v~ka~~~k~i~~ild~~ 104 (288)
....-..-|.-++++|++++|.+.|.+.++++++. +.|=--++.|+++.+++
T Consensus 367 ~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~Vi~kfLdaq~IknLt~YL 420 (933)
T KOG2114|consen 367 LAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEVIKKFLDAQRIKNLTSYL 420 (933)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHHHHHhcCHHHHHHHHHHH
Confidence 34555667888999999999999999999998664 22222344455444444
No 231
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=69.94 E-value=49 Score=26.63 Aligned_cols=56 Identities=16% Similarity=0.235 Sum_probs=39.2
Q ss_pred hHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHHHHHHHhhc---CHHHHHHHH
Q 023037 141 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETK---NNKKLKQLY 205 (288)
Q Consensus 141 kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE~~~y~~~~---n~~kak~~y 205 (288)
++|.-++.+|++-+|.++++++-..=. +| ...--+|.+++.|+..+. ..+-+|..|
T Consensus 1 e~A~~~~~rGnhiKAL~iied~i~~h~-----~~----~~~~~lh~~QG~if~~lA~~ten~d~k~~y 59 (111)
T PF04781_consen 1 EKAKDYFARGNHIKALEIIEDLISRHG-----ED----ESSWLLHRLQGTIFYKLAKKTENPDVKFRY 59 (111)
T ss_pred ChHHHHHHccCHHHHHHHHHHHHHHcc-----CC----CchHHHHHHHhHHHHHHHHhccCchHHHHH
Confidence 367889999999999999999977622 22 222278888999987764 344455433
No 232
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=69.72 E-value=16 Score=34.47 Aligned_cols=57 Identities=26% Similarity=0.416 Sum_probs=40.8
Q ss_pred CCCCHHHHHHHHHHhhcCCcc-c-----------------------------hhhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 023037 28 VETDPEGALAGFAEVVAMEPE-K-----------------------------AEWGFKALKQTVKLYYRLGKYKEMMDAY 77 (288)
Q Consensus 28 ~~~d~~~Al~~f~~ii~~~~e-~-----------------------------~~~~~kal~~l~~l~~~~g~~~~~l~~~ 77 (288)
+..++.+|+..|.+.|..++. . ..-..||+-.||..|..+|++.++.+.|
T Consensus 93 ~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~ay 172 (304)
T KOG0553|consen 93 KNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAY 172 (304)
T ss_pred HhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHH
Confidence 467788888888888877541 0 1123577778888888888888888888
Q ss_pred HHHHHHH
Q 023037 78 REMLTYI 84 (288)
Q Consensus 78 ~~~l~~~ 84 (288)
+..|.+=
T Consensus 173 kKaLeld 179 (304)
T KOG0553|consen 173 KKALELD 179 (304)
T ss_pred HhhhccC
Confidence 8777665
No 233
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=69.51 E-value=25 Score=33.80 Aligned_cols=120 Identities=16% Similarity=0.164 Sum_probs=89.4
Q ss_pred hhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhHHHHHHhh
Q 023037 148 DMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIREC 227 (288)
Q Consensus 148 ~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE~~~y~~~~n~~kak~~y~~A~~~a~~I~~p~i~a~I~~~ 227 (288)
+.|++..-...|+.++-.-.+ ++. .=+.|-|--|+.-|++-+.|..|...||..++. .-.+|.|-+++.--
T Consensus 54 ~~gd~~~~~~~LqslK~da~E----~ep---~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~--kc~D~dlnavLY~N 124 (390)
T KOG0551|consen 54 SEGDPNPDNVCLQSLKADAEE----GEP---HEQAENYKEEGNEYFKEKRYKDAVESYTEGLKK--KCADPDLNAVLYTN 124 (390)
T ss_pred CCCCCCccHHHHHHhhhcccc----CCh---HHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhh--cCCCccHHHHHHhh
Confidence 446666556666666655333 333 448899999999999999999999999997654 44569999999999
Q ss_pred cchhhhhhccHHHHHHHHHHHHhhhhh------hCChhHHHHhHHHHHHHHhcCCC
Q 023037 228 GGKMHMAERQWADAATDFFEAFKNYDE------AGNQRRIQCLKYLVLANMLMESE 277 (288)
Q Consensus 228 ~G~l~~~ekdy~~A~syF~EaF~~y~e------~g~~~a~~~LKY~~L~~il~~~~ 277 (288)
-.--+.+-|||..|.++...|.+ |+. ..+.++.-.|++.-+|-=++++.
T Consensus 125 RAAa~~~l~NyRs~l~Dcs~al~-~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~ 179 (390)
T KOG0551|consen 125 RAAAQLYLGNYRSALNDCSAALK-LKPTHLKAYIRGAKCLLELERFAEAVNWCEEG 179 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-cCcchhhhhhhhhHHHHHHHHHHHHHHHHhhh
Confidence 88889999999999999988865 232 12345666788877776665443
No 234
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=68.55 E-value=13 Score=37.02 Aligned_cols=68 Identities=10% Similarity=0.065 Sum_probs=49.4
Q ss_pred hHHHHHHhhccc-CCCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 023037 16 SRVLCSILEKGL-VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTY 83 (288)
Q Consensus 16 ~~~~~y~~ak~~-~~~d~~~Al~~f~~ii~~~~e~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~ 83 (288)
+.+-.++.|+-. ..+|+++|++.|++.+....+-.+..--++..++-.+.-++++++|.+++..+...
T Consensus 266 s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~ 334 (468)
T PF10300_consen 266 SALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE 334 (468)
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc
Confidence 344455555543 57889999999998886544444555667788888899999999999888888764
No 235
>PF12854 PPR_1: PPR repeat
Probab=68.28 E-value=8.8 Score=23.64 Aligned_cols=26 Identities=19% Similarity=0.434 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 023037 55 KALKQTVKLYYRLGKYKEMMDAYREM 80 (288)
Q Consensus 55 kal~~l~~l~~~~g~~~~~l~~~~~~ 80 (288)
.++.-|+.-|++.|+.++|.+++.++
T Consensus 8 ~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 8 VTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45678999999999999999998764
No 236
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=67.41 E-value=44 Score=32.56 Aligned_cols=93 Identities=15% Similarity=0.229 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh---hhhhhHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHHHHhhhh
Q 023037 56 ALKQTVKLYYRLGKYKEMMDAYREMLTYIKSA---VTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE 132 (288)
Q Consensus 56 al~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~---v~ka~~~k~i~~ild~~~~~~~~~~~~~~~~~~~~l~~i~~a~ne 132 (288)
-++.-|.-|+++|+|++++++|......- +. ..-|++.--++ +..+... + .-|...+ .=+
T Consensus 99 EiKE~GN~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk--~K~FA~A--------E---~DC~~Ai---aLd 161 (536)
T KOG4648|consen 99 EIKERGNTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLK--QKSFAQA--------E---EDCEAAI---ALD 161 (536)
T ss_pred HHHHhhhhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHH--HHHHHHH--------H---HhHHHHH---Hhh
Confidence 36777889999999999999999887655 42 12222221111 1111110 0 1111111 135
Q ss_pred hhhHHhhhhHHHHHhhhcchhHHHHHHHHHHHh
Q 023037 133 RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKS 165 (288)
Q Consensus 133 r~~f~~~~kL~~lyl~~~~y~~~~~ll~elkk~ 165 (288)
++..+.+.|.+..-...|+..+|.+-...+..+
T Consensus 162 ~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~L 194 (536)
T KOG4648|consen 162 KLYVKAYSRRMQARESLGNNMEAKKDCETVLAL 194 (536)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhh
Confidence 777788888888888888888887777766666
No 237
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=66.45 E-value=1e+02 Score=28.06 Aligned_cols=55 Identities=18% Similarity=0.062 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHhhhcc---CCChhHHHHHHhhcchhhhhhccHHHHHHHHHHHHhhh
Q 023037 198 NKKLKQLYQKALAIKSA---IPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (288)
Q Consensus 198 ~~kak~~y~~A~~~a~~---I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EaF~~y 252 (288)
..+|..+|..|..++.. .+||--.|.+--.+=-.|=-.++-+.|+.---+||...
T Consensus 144 ~~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~A 201 (244)
T smart00101 144 AENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEA 201 (244)
T ss_pred HHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 56899999999999875 56698888776665433334577777775555555443
No 238
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=66.37 E-value=1.9e+02 Score=30.89 Aligned_cols=215 Identities=11% Similarity=0.146 Sum_probs=123.9
Q ss_pred HHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhh---------------hhhHHHHH
Q 023037 33 EGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVT---------------RNYSEKCI 97 (288)
Q Consensus 33 ~~Al~~f~~ii~~~~e~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~---------------ka~~~k~i 97 (288)
.++++.+++.+..++... .++.+++--|..+++.+.|+++.++.+.......+ =..+.++|
T Consensus 461 ~kslqale~av~~d~~dp----~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vv 536 (799)
T KOG4162|consen 461 KKSLQALEEAVQFDPTDP----LVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVV 536 (799)
T ss_pred HHHHHHHHHHHhcCCCCc----hHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 578888888888765333 67889999999999999999999999887311111 12344455
Q ss_pred HHHHHHhccCCC---------cchhhHHHHHHHHHHHHH-Hhh--------hhhhhHHhhhhHHHHHhhhcchhH-----
Q 023037 98 NNIMDFVSGSAS---------QNFSLLREFYQTTLKALE-EAK--------NERLWFKTNLKLCKIWFDMGEYGR----- 154 (288)
Q Consensus 98 ~~ild~~~~~~~---------~~~~~~~~~~~~~l~~i~-~a~--------ner~~f~~~~kL~~lyl~~~~y~~----- 154 (288)
...++-++...+ -.....+..+++|...+. |-. .+....++ .+.+.+-..+-.+
T Consensus 537 d~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~l---k~~l~la~~q~~~a~s~s 613 (799)
T KOG4162|consen 537 DAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRL---KAGLHLALSQPTDAISTS 613 (799)
T ss_pred HHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhh---hcccccCcccccccchhh
Confidence 554544443100 011122333444444433 220 01011111 1112222222222
Q ss_pred --HHHHHHHHHHhccC-----CCC--Ccccccc-chHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhHHHHH
Q 023037 155 --MSKILKELHKSCQR-----EDG--TDDQKKG-SQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGII 224 (288)
Q Consensus 155 --~~~ll~elkk~~~~-----~~~--~dDk~~~-~~llEv~~lE~~~y~~~~n~~kak~~y~~A~~~a~~I~~p~i~a~I 224 (288)
+..+++ .+...-. +.. ..+++.. ..+.++.++-...+...+|...++-.+..|..+- .+.+.+
T Consensus 614 r~ls~l~a-~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~------~l~~~~ 686 (799)
T KOG4162|consen 614 RYLSSLVA-SQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID------PLSASV 686 (799)
T ss_pred HHHHHHHH-hhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc------hhhHHH
Confidence 333433 1111111 000 0122111 3447888888999999999999999988887766 556677
Q ss_pred HhhcchhhhhhccHHHHHHHHHHHHhhhhhhCChhHHHH
Q 023037 225 RECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQC 263 (288)
Q Consensus 225 ~~~~G~l~~~ekdy~~A~syF~EaF~~y~e~g~~~a~~~ 263 (288)
.-+.|.++-..|.|..|.+-|..|.- -+-+.+....+
T Consensus 687 ~~~~G~~~~~~~~~~EA~~af~~Al~--ldP~hv~s~~A 723 (799)
T KOG4162|consen 687 YYLRGLLLEVKGQLEEAKEAFLVALA--LDPDHVPSMTA 723 (799)
T ss_pred HHHhhHHHHHHHhhHHHHHHHHHHHh--cCCCCcHHHHH
Confidence 88899999999999999999999864 22344454444
No 239
>PF13041 PPR_2: PPR repeat family
Probab=66.02 E-value=13 Score=24.47 Aligned_cols=28 Identities=21% Similarity=0.485 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 023037 56 ALKQTVKLYYRLGKYKEMMDAYREMLTY 83 (288)
Q Consensus 56 al~~l~~l~~~~g~~~~~l~~~~~~l~~ 83 (288)
++.-++..|++.|++++|.++|+++...
T Consensus 5 ~yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 5 TYNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 5677899999999999999999998743
No 240
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=65.70 E-value=16 Score=21.39 Aligned_cols=27 Identities=11% Similarity=0.234 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 023037 56 ALKQTVKLYYRLGKYKEMMDAYREMLT 82 (288)
Q Consensus 56 al~~l~~l~~~~g~~~~~l~~~~~~l~ 82 (288)
++..+...+.+.|+++.+.+++.++..
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 466788999999999999999988764
No 241
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=64.65 E-value=86 Score=26.44 Aligned_cols=88 Identities=14% Similarity=0.061 Sum_probs=60.2
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhhHHhhhhHHHHHhhhcchhHH---HHHHHHHHHhccCCCCCccccccchHHHHHHHHH
Q 023037 113 SLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRM---SKILKELHKSCQREDGTDDQKKGSQLLEVYAIEI 189 (288)
Q Consensus 113 ~~~~~~~~~~l~~i~~a~ner~~f~~~~kL~~lyl~~~~y~~~---~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE~ 189 (288)
.....++..+.+.+..+...-....+.+++|-.+....+-++. ..++.++.+. .++ +++. |..-.-.
T Consensus 9 ~a~~d~~~~~e~~~rq~a~~~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~--~~~-~~rR-------e~lyYLA 78 (149)
T KOG3364|consen 9 WAIEDLIAGQEEILRQAARSDVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKS--AHP-ERRR-------ECLYYLA 78 (149)
T ss_pred hhhhhhhHHHHHHHHHHHhccchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhh--cCc-ccch-------hhhhhhH
Confidence 3666777777777776655555667788999999988877774 6677777762 221 1222 4444455
Q ss_pred HHHHhhcCHHHHHHHHHHHHh
Q 023037 190 QMYTETKNNKKLKQLYQKALA 210 (288)
Q Consensus 190 ~~y~~~~n~~kak~~y~~A~~ 210 (288)
--|+++|||++++.+....+.
T Consensus 79 vg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 79 VGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred HHHHHHhhHHHHHHHHHHHHh
Confidence 667899999999998887543
No 242
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.50 E-value=1.1e+02 Score=29.38 Aligned_cols=70 Identities=16% Similarity=0.238 Sum_probs=49.8
Q ss_pred hhhhHHHHHhhhcchhHHHHHHHHHHHh-c-cCC--C------CCcc-------ccccchHHHHHHHHHHHHHhhcCHHH
Q 023037 138 TNLKLCKIWFDMGEYGRMSKILKELHKS-C-QRE--D------GTDD-------QKKGSQLLEVYAIEIQMYTETKNNKK 200 (288)
Q Consensus 138 ~~~kL~~lyl~~~~y~~~~~ll~elkk~-~-~~~--~------~~dD-------k~~~~~llEv~~lE~~~y~~~~n~~k 200 (288)
+-.++|-.++.+|+|..|.+++.|+-.- . +.| + |-|- ++--+.++|.+-+-.-+++..+|+.-
T Consensus 180 lAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eA 259 (459)
T KOG4340|consen 180 LAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEA 259 (459)
T ss_pred hHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHH
Confidence 4567889999999999998888887543 0 000 0 0011 11225578888888999999999999
Q ss_pred HHHHHHH
Q 023037 201 LKQLYQK 207 (288)
Q Consensus 201 ak~~y~~ 207 (288)
|+.+++.
T Consensus 260 A~eaLtD 266 (459)
T KOG4340|consen 260 AQEALTD 266 (459)
T ss_pred HHHHhhc
Confidence 9998874
No 243
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=63.97 E-value=26 Score=30.74 Aligned_cols=71 Identities=18% Similarity=0.312 Sum_probs=45.2
Q ss_pred HHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhccC
Q 023037 33 EGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLG----KYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGS 107 (288)
Q Consensus 33 ~~Al~~f~~ii~~~~e~~~~~~kal~~l~~l~~~~g----~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~~~~~ 107 (288)
++|+.-|++.+.++|+ .-.|+..+|..|..++ +..++-++|.+...+++..+...-.....|+-|+...+.
T Consensus 52 edAisK~eeAL~I~P~----~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~ka 126 (186)
T PF06552_consen 52 EDAISKFEEALKINPN----KHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAAKA 126 (186)
T ss_dssp HHHHHHHHHHHHH-TT-----HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHhcCCc----hHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhh
Confidence 4677777777777654 2356777777777655 456777888888888866666655566666666655443
No 244
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=63.63 E-value=30 Score=29.21 Aligned_cols=52 Identities=23% Similarity=0.341 Sum_probs=35.7
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 023037 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (288)
Q Consensus 29 ~~d~~~Al~~f~~ii~~~~e~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~ 84 (288)
.++.+.|++.|.+.+..-++ ...+|++=+..++-+|+.+++++-+.+.+++.
T Consensus 56 ~g~Ld~AlE~F~qal~l~P~----raSayNNRAQa~RLq~~~e~ALdDLn~AleLa 107 (175)
T KOG4555|consen 56 AGDLDGALELFGQALCLAPE----RASAYNNRAQALRLQGDDEEALDDLNKALELA 107 (175)
T ss_pred ccchHHHHHHHHHHHHhccc----chHhhccHHHHHHHcCChHHHHHHHHHHHHhc
Confidence 45677777777777766432 34566667777777777777777777777766
No 245
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=63.43 E-value=31 Score=34.56 Aligned_cols=101 Identities=16% Similarity=0.129 Sum_probs=70.7
Q ss_pred hhhHHhhhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 023037 133 RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 212 (288)
Q Consensus 133 r~~f~~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE~~~y~~~~n~~kak~~y~~A~~~a 212 (288)
+.-+....-.+.-+++.|+++++..++++|.+.-+ |+ ..+ ..+-++++...|..++|-+.+.+|+...
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P-----~N----~~~---~~~~~~i~~~~nk~~~A~e~~~kal~l~ 370 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQP-----DN----PYY---LELAGDILLEANKAKEAIERLKKALALD 370 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCC-----CC----HHH---HHHHHHHHHHcCChHHHHHHHHHHHhcC
Confidence 34445566778889999999999999999888732 22 222 2344788889999999999999998776
Q ss_pred ccCCChhHHHHHHhhcchhhhhhccHHHHHHHHHHHHhh
Q 023037 213 SAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 251 (288)
Q Consensus 213 ~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EaF~~ 251 (288)
..-+- +...-|.+++.-|+++.|..+.-+...+
T Consensus 371 P~~~~------l~~~~a~all~~g~~~eai~~L~~~~~~ 403 (484)
T COG4783 371 PNSPL------LQLNLAQALLKGGKPQEAIRILNRYLFN 403 (484)
T ss_pred CCccH------HHHHHHHHHHhcCChHHHHHHHHHHhhc
Confidence 55443 3344455555666666777766666543
No 246
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=62.78 E-value=1e+02 Score=27.44 Aligned_cols=97 Identities=19% Similarity=0.233 Sum_probs=71.3
Q ss_pred hhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHH-HHHHHhhcCHHHHHHHHHHHHhhhccCCC
Q 023037 139 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIE-IQMYTETKNNKKLKQLYQKALAIKSAIPH 217 (288)
Q Consensus 139 ~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE-~~~y~~~~n~~kak~~y~~A~~~a~~I~~ 217 (288)
-+-+|..+.+.+++++|..-|+..... + .| ..|-.+..+- .++...+|. +..|+++-.+|-.
T Consensus 92 aL~lAk~~ve~~~~d~A~aqL~~~l~~---t---~D----e~lk~l~~lRLArvq~q~~k-------~D~AL~~L~t~~~ 154 (207)
T COG2976 92 ALELAKAEVEANNLDKAEAQLKQALAQ---T---KD----ENLKALAALRLARVQLQQKK-------ADAALKTLDTIKE 154 (207)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHcc---c---hh----HHHHHHHHHHHHHHHHHhhh-------HHHHHHHHhcccc
Confidence 467888999999999998877776654 2 33 2232222222 334444443 4566677777888
Q ss_pred hhHHHHHHhhcchhhhhhccHHHHHHHHHHHHhhh
Q 023037 218 PRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (288)
Q Consensus 218 p~i~a~I~~~~G~l~~~ekdy~~A~syF~EaF~~y 252 (288)
+.--+.+-+.-|.+++..||=..|+.-+-.|.+..
T Consensus 155 ~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 155 ESWAAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred ccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 88889999999999999999999999999998877
No 247
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=62.13 E-value=1.2e+02 Score=32.65 Aligned_cols=114 Identities=14% Similarity=0.105 Sum_probs=85.9
Q ss_pred hhhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhc-cCC
Q 023037 138 TNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKS-AIP 216 (288)
Q Consensus 138 ~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE~~~y~~~~n~~kak~~y~~A~~~a~-~I~ 216 (288)
+-+=.|=.....+.|.+|..+|.++-.-...+ ++...+..+.|-.++-.++-...++..++-...+-++.--- .-+
T Consensus 417 Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~---~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~ 493 (894)
T COG2909 417 LVLLQAWLLASQHRLAEAETLIARLEHFLKAP---MHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAY 493 (894)
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHhCcC---cccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccc
Confidence 33444555668899999999999999998887 45555689999999999999999999999888888774333 333
Q ss_pred ChhHHHHHHhhcchhhhhhccHHHHHHHHHHHHhhhhhhC
Q 023037 217 HPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAG 256 (288)
Q Consensus 217 ~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EaF~~y~e~g 256 (288)
-+++++- -.-|-+++-.|+|.+|..+--+|-+-....+
T Consensus 494 ~~r~~~~--sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~ 531 (894)
T COG2909 494 RSRIVAL--SVLGEAAHIRGELTQALALMQQAEQMARQHD 531 (894)
T ss_pred hhhhhhh--hhhhHHHHHhchHHHHHHHHHHHHHHHHHcc
Confidence 3555544 3557888999999999888777665544433
No 248
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=62.12 E-value=75 Score=34.41 Aligned_cols=58 Identities=22% Similarity=0.347 Sum_probs=39.7
Q ss_pred HHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCC
Q 023037 142 LCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP 216 (288)
Q Consensus 142 L~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE~~~y~~~~n~~kak~~y~~A~~~a~~I~ 216 (288)
++++..-+|+.++|..+-+|. .|+ .-+|. -.++|-..++.-+|--.||+|.+.+|+|-
T Consensus 944 ~VrI~C~qGk~~kAa~iA~es----------gd~------AAcYh-laR~YEn~g~v~~Av~FfTrAqafsnAIR 1001 (1416)
T KOG3617|consen 944 MVRIKCIQGKTDKAARIAEES----------GDK------AACYH-LARMYENDGDVVKAVKFFTRAQAFSNAIR 1001 (1416)
T ss_pred heeeEeeccCchHHHHHHHhc----------ccH------HHHHH-HHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 334444556666666555544 333 12333 36889999999999999999999999874
No 249
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=61.35 E-value=1.8e+02 Score=33.33 Aligned_cols=61 Identities=16% Similarity=0.151 Sum_probs=34.9
Q ss_pred HHHHhhcccCCCCHHHHHHHHHHhhcC----Cc-cchh-hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 023037 19 LCSILEKGLVETDPEGALAGFAEVVAM----EP-EKAE-WGFKALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (288)
Q Consensus 19 ~~y~~ak~~~~~d~~~Al~~f~~ii~~----~~-e~~~-~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~ 84 (288)
..-|.|=-+.-++.++|-+.+++.+.. ++ |+.+ | -|+.+|-..|. .-+.+.+.+.+.+.|+
T Consensus 1461 WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiW--iA~lNlEn~yG---~eesl~kVFeRAcqyc 1527 (1710)
T KOG1070|consen 1461 WIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIW--IAYLNLENAYG---TEESLKKVFERACQYC 1527 (1710)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHH--HHHHhHHHhhC---cHHHHHHHHHHHHHhc
Confidence 345666666667778888888887753 11 3443 4 55655554443 3444455555555555
No 250
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=61.28 E-value=9.5 Score=24.59 Aligned_cols=31 Identities=16% Similarity=0.362 Sum_probs=20.4
Q ss_pred HHhhcchhhhhhccHHHHHHHHHHHHhhhhh
Q 023037 224 IRECGGKMHMAERQWADAATDFFEAFKNYDE 254 (288)
Q Consensus 224 I~~~~G~l~~~ekdy~~A~syF~EaF~~y~e 254 (288)
+...-|-+.++..+|.+|..+|-.|.+...+
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i~~~ 33 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEIQEE 33 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 3445566677777777777777777665443
No 251
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=61.13 E-value=1.6e+02 Score=28.32 Aligned_cols=144 Identities=15% Similarity=0.156 Sum_probs=92.8
Q ss_pred CHHHHHHHHHHhhcC-Ccc-------chhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Q 023037 31 DPEGALAGFAEVVAM-EPE-------KAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMD 102 (288)
Q Consensus 31 d~~~Al~~f~~ii~~-~~e-------~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild 102 (288)
.+.++-..|..++.. +++ ..-|--.+|.|++.++..+|+.+.+.+++++.+=.+...+ .. ..+.+.+
T Consensus 9 ~Y~~~q~~F~~~v~~~Dp~~l~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~-~~----~F~~~~~ 83 (360)
T PF04910_consen 9 AYQEAQEQFYAAVQSHDPNALINLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAF-HP----SFSPFRS 83 (360)
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH-HH----Hhhhhhc
Confidence 344555555555543 221 2345578999999999999999999999999988883332 11 1111111
Q ss_pred HhccCCCcchhhHHHHHHHHHHHHHHhhh-hhhhHHhhhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchH
Q 023037 103 FVSGSASQNFSLLREFYQTTLKALEEAKN-ERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQL 181 (288)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~l~~i~~a~n-er~~f~~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~l 181 (288)
..+... --+.+... .|-.|.+-.|.+..+-.+|-+..|.+..+-|.++.+. +|..--.+.
T Consensus 84 ~~~~g~---------------~rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~----~DP~g~ll~ 144 (360)
T PF04910_consen 84 NLTSGN---------------CRLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPD----EDPLGVLLF 144 (360)
T ss_pred ccccCc---------------cccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCC----CCcchhHHH
Confidence 122110 01222223 3556688889999999999999999999999999443 355333555
Q ss_pred HHHHHHHHHHHHhhcCH
Q 023037 182 LEVYAIEIQMYTETKNN 198 (288)
Q Consensus 182 lEv~~lE~~~y~~~~n~ 198 (288)
++.|++-++-|.-+-++
T Consensus 145 ID~~ALrs~~y~~Li~~ 161 (360)
T PF04910_consen 145 IDYYALRSRQYQWLIDF 161 (360)
T ss_pred HHHHHHhcCCHHHHHHH
Confidence 88888877766554433
No 252
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=61.11 E-value=1.8e+02 Score=28.94 Aligned_cols=129 Identities=16% Similarity=0.203 Sum_probs=78.0
Q ss_pred HhhhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCC
Q 023037 137 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP 216 (288)
Q Consensus 137 ~~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE~~~y~~~~n~~kak~~y~~A~~~a~~I~ 216 (288)
++..-+...|=..|+...+...+..+++...--...+.+ ..|+.+.+ +.|..- ..|.+|-+.-+...
T Consensus 170 k~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~q---avLiN~LL---r~yL~n-------~lydqa~~lvsK~~ 236 (493)
T KOG2581|consen 170 KLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQ---AVLINLLL---RNYLHN-------KLYDQADKLVSKSV 236 (493)
T ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhH---HHHHHHHH---HHHhhh-------HHHHHHHHHhhccc
Confidence 344444445555566556666666555553333211222 33333322 233222 34555544444322
Q ss_pred --C---hhHHHHHHhhcchhhhhhccHHHHHHHHHHHHhhhhhhCCh-hHHHHhHHHHHHHHhcCCCC
Q 023037 217 --H---PRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQ-RRIQCLKYLVLANMLMESEV 278 (288)
Q Consensus 217 --~---p~i~a~I~~~~G~l~~~ekdy~~A~syF~EaF~~y~e~g~~-~a~~~LKY~~L~~il~~~~~ 278 (288)
| ..-.|.--.-.|++.+-+.||.+|..||..|.+-.-..+.- -+.+|-|+|++..+|++.-.
T Consensus 237 ~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~alGf~q~v~k~~ivv~ll~geiP 304 (493)
T KOG2581|consen 237 YPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHAALGFRQQVNKLMIVVELLLGEIP 304 (493)
T ss_pred CccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchhhhhHHHHHHHHHHHHHHHcCCCc
Confidence 2 24677777788999999999999999999999876543332 46678899999999997654
No 253
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=60.69 E-value=1e+02 Score=26.04 Aligned_cols=53 Identities=21% Similarity=0.316 Sum_probs=36.5
Q ss_pred HhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHh
Q 023037 146 WFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALA 210 (288)
Q Consensus 146 yl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE~~~y~~~~n~~kak~~y~~A~~ 210 (288)
+..+|+-+++.+++++|.+- .+ .--|+..-.+.+|.++||..++..++.+|..
T Consensus 96 lv~~~kkDqLdki~~~l~kn-------~~-----~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 96 LVKQGKKDQLDKIYNELKKN-------EE-----INPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp HHHTT-HHHHHHHHHHH-----------------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHhhc-------cC-----CCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 44677888899999999874 11 1225666678899999999999999999854
No 254
>PF07840 FadR_C: FadR C-terminal domain; InterPro: IPR008920 Bacteria regulate membrane fluidity by manipulating the relative levels of saturated and unsaturated fatty acids within the phospholipids of their membrane bilayers. In Escherichia coli, the transcription factor, FadR, functions as a switch that co-ordinately regulates the machinery required for fatty acid beta-oxidation and the expression of a key enzyme in fatty acid biosynthesis. This single repressor controls the transcription of the whole fad regulon []. Binding of fadR is specifically inhibited by long chain fatty acyl-CoA compounds. The crystal structure of FadR reveals a two domain dimeric molecule where the N-terminal winged-helix domain binds DNA (IPR000524 from INTERPRO), and the C-terminal domain binds acyl-CoA []. The binding of acyl-CoA to the C-terminal domain results in a conformational change that affects the DNA binding affinity of the N-terminal domain []. FadR is a member of the GntR family of bacterial transcription regulators. The DNA-binding domain is well conserved for this family, whereas the C-terminal effector-binding domain (IPR011711 from INTERPRO) is more variable, and is consequently used to define the GntR subfamilies []. The FadR group is the largest subgroup, and is characterised by an all-helical C-terminal domain composed of 6 to 7 alpha helices []. This entry represents the C-terminal domain of FadR.; GO: 0000062 fatty-acyl-CoA binding, 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0019217 regulation of fatty acid metabolic process; PDB: 1HW1_B 1H9T_A 1HW2_A 1H9G_A 1E2X_A.
Probab=60.28 E-value=1.1e+02 Score=26.27 Aligned_cols=77 Identities=18% Similarity=0.254 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHhhhh--hhhH----HhhhhHHHHHhhhcchhH-HHHHHHHHHHhccCCCCCccccccchHHHHHHH
Q 023037 115 LREFYQTTLKALEEAKNE--RLWF----KTNLKLCKIWFDMGEYGR-MSKILKELHKSCQREDGTDDQKKGSQLLEVYAI 187 (288)
Q Consensus 115 ~~~~~~~~l~~i~~a~ne--r~~f----~~~~kL~~lyl~~~~y~~-~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~l 187 (288)
.+-=|.+.....--++|. .+++ .++.|+|..|+...+-.+ +...+++|+..|+..+. +.- ..++.-|..
T Consensus 71 a~fDy~l~~~la~~S~NpiY~LilNgfk~lY~rvg~~YFs~~~aR~la~~fY~~L~~~~~~~~~-~~v---~~~vr~yg~ 146 (164)
T PF07840_consen 71 AEFDYQLFRRLAFASGNPIYGLILNGFKGLYSRVGRYYFSNPEARELALNFYRELLEACEKGDY-DQV---PDVVRQYGI 146 (164)
T ss_dssp HHHHHHHHHHHHHHTS-HHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHCT-C-CGH---HHHHHHHHH
T ss_pred HHHhHHHHHHHHHhcCCCchhhHHcccHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHhCCH-HHH---HHHHHHHHH
Confidence 333455555555555555 5555 789999999999877777 79999999999987532 222 555677777
Q ss_pred H-HHHHHhh
Q 023037 188 E-IQMYTET 195 (288)
Q Consensus 188 E-~~~y~~~ 195 (288)
| +++.+.+
T Consensus 147 ~Sg~iW~~~ 155 (164)
T PF07840_consen 147 ESGEIWQSM 155 (164)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 7 4455444
No 255
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=59.90 E-value=30 Score=34.37 Aligned_cols=81 Identities=20% Similarity=0.286 Sum_probs=50.2
Q ss_pred hhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHh---hhccCC
Q 023037 140 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALA---IKSAIP 216 (288)
Q Consensus 140 ~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE~~~y~~~~n~~kak~~y~~A~~---~a~~I~ 216 (288)
-+||..-+.+|+++-|.+.+++.+.. +.| +-+|...||..+++.+...|.. ...+..
T Consensus 351 ~~Lg~~AL~~g~~~lAe~c~~k~~d~-------------~~L-------~lLy~~~g~~~~L~kl~~~a~~~~~~n~af~ 410 (443)
T PF04053_consen 351 KQLGDEALRQGNIELAEECYQKAKDF-------------SGL-------LLLYSSTGDREKLSKLAKIAEERGDINIAFQ 410 (443)
T ss_dssp HHHHHHHHHTTBHHHHHHHHHHCT-H-------------HHH-------HHHHHHCT-HHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHhhcCc-------------ccc-------HHHHHHhCCHHHHHHHHHHHHHccCHHHHHH
Confidence 57888888888888888888887666 222 2246678888888887777652 222344
Q ss_pred ChhHHHHHHhhcchhhhhhccHHHH
Q 023037 217 HPRIMGIIRECGGKMHMAERQWADA 241 (288)
Q Consensus 217 ~p~i~a~I~~~~G~l~~~ekdy~~A 241 (288)
|--+.|.+++|. .+...-+.+..|
T Consensus 411 ~~~~lgd~~~cv-~lL~~~~~~~~A 434 (443)
T PF04053_consen 411 AALLLGDVEECV-DLLIETGRLPEA 434 (443)
T ss_dssp HHHHHT-HHHHH-HHHHHTT-HHHH
T ss_pred HHHHcCCHHHHH-HHHHHcCCchHH
Confidence 466666666666 444455555444
No 256
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=59.64 E-value=44 Score=23.60 Aligned_cols=49 Identities=18% Similarity=0.294 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHhhhhhhhHHhhhhHHHHHhhhcchhHHHHHHHHHHHhc
Q 023037 118 FYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSC 166 (288)
Q Consensus 118 ~~~~~l~~i~~a~ner~~f~~~~kL~~lyl~~~~y~~~~~ll~elkk~~ 166 (288)
.++...+.++.-+..|-=|.=.+..+.-|++.|++++|.+.++++-+-+
T Consensus 5 ~~~~~~~~~~~lR~~RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~~~ 53 (62)
T PF14689_consen 5 QLEELEELIDSLRAQRHDFLNHLQVIYGLLQLGKYEEAKEYIKELSKDL 53 (62)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 3444555555556677778788889999999999999999999887663
No 257
>KOG2996 consensus Rho guanine nucleotide exchange factor VAV3 [Signal transduction mechanisms]
Probab=59.64 E-value=5.6 Score=40.63 Aligned_cols=49 Identities=22% Similarity=0.413 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHhhhhhhCChhHHHHhHHHHHHHHhcCCCCCCCCCCCC
Q 023037 238 WADAATDFFEAFKNYDEAGNQRRIQCLKYLVLANMLMESEVNPFDGQEA 286 (288)
Q Consensus 238 y~~A~syF~EaF~~y~e~g~~~a~~~LKY~~L~~il~~~~~dpF~s~E~ 286 (288)
|.---+++||||+.|+--|--+-+..|-.+-..+|-.+..|+||-+.|.
T Consensus 86 Fglr~seLF~afDLfdv~dFgKVi~tlS~LS~t~ial~rGi~PFPteee 134 (865)
T KOG2996|consen 86 FGLRDSELFEAFDLFDVRDFGKVIKTLSRLSHTPIALNRGIRPFPTEEE 134 (865)
T ss_pred hCCchhhhcchhhhhhhhhHHHHHHHHHHhccChHHHhcCCCCCCChhh
Confidence 3344588999999999999899999999999999999999999998653
No 258
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=58.29 E-value=23 Score=22.82 Aligned_cols=36 Identities=28% Similarity=0.418 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCh
Q 023037 183 EVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP 218 (288)
Q Consensus 183 Ev~~lE~~~y~~~~n~~kak~~y~~A~~~a~~I~~p 218 (288)
+||..-+.+.....|++.|..=|++|+.+...+.-|
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~~~ 37 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQEELLPP 37 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence 678888899999999999999999999998876654
No 259
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=57.34 E-value=53 Score=23.30 Aligned_cols=29 Identities=24% Similarity=0.502 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 023037 56 ALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (288)
Q Consensus 56 al~~l~~l~~~~g~~~~~l~~~~~~l~~~ 84 (288)
.+.+-+.-.-+.|++++|+++|++.+.++
T Consensus 7 ~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l 35 (69)
T PF04212_consen 7 ELIKKAVEADEAGNYEEALELYKEAIEYL 35 (69)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 34445556677899999999999999998
No 260
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=56.79 E-value=1.9e+02 Score=30.52 Aligned_cols=140 Identities=11% Similarity=0.164 Sum_probs=86.2
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhh--hHHHHHHHHHHHhcc
Q 023037 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRN--YSEKCINNIMDFVSG 106 (288)
Q Consensus 29 ~~d~~~Al~~f~~ii~~~~e~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka--~~~k~i~~ild~~~~ 106 (288)
.+=|+.++..|.+-+..+|+.. ..-+..+.+.++.+++.+-|...++-= ..+++. -....-..+-|.+++
T Consensus 151 ~~lPets~rvyrRYLk~~P~~~-------eeyie~L~~~d~~~eaa~~la~vln~d-~f~sk~gkSn~qlw~elcdlis~ 222 (835)
T KOG2047|consen 151 HGLPETSIRVYRRYLKVAPEAR-------EEYIEYLAKSDRLDEAAQRLATVLNQD-EFVSKKGKSNHQLWLELCDLISQ 222 (835)
T ss_pred CCChHHHHHHHHHHHhcCHHHH-------HHHHHHHHhccchHHHHHHHHHhcCch-hhhhhcccchhhHHHHHHHHHHh
Confidence 3556889999999888876432 345667788899999999888887644 233322 223455556677776
Q ss_pred CCCcc-hhhHHHHHHHHHHHHHHhhhhhhhHHhhhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHH
Q 023037 107 SASQN-FSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVY 185 (288)
Q Consensus 107 ~~~~~-~~~~~~~~~~~l~~i~~a~ner~~f~~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~ 185 (288)
.|+.- .-.++.++.--+ .. -.-.|..+=+.||.-|...|.|++|..++.|........ .|- +.+.+.|
T Consensus 223 ~p~~~~slnvdaiiR~gi---~r--ftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tv---rDF---t~ifd~Y 291 (835)
T KOG2047|consen 223 NPDKVQSLNVDAIIRGGI---RR--FTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTV---RDF---TQIFDAY 291 (835)
T ss_pred CcchhcccCHHHHHHhhc---cc--CcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheeh---hhH---HHHHHHH
Confidence 55400 001122211111 00 112334666789999999999999988888876664443 455 6666665
Q ss_pred HH
Q 023037 186 AI 187 (288)
Q Consensus 186 ~l 187 (288)
+.
T Consensus 292 a~ 293 (835)
T KOG2047|consen 292 AQ 293 (835)
T ss_pred HH
Confidence 54
No 261
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=55.63 E-value=37 Score=31.43 Aligned_cols=66 Identities=24% Similarity=0.157 Sum_probs=53.0
Q ss_pred CCCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHH
Q 023037 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEK 95 (288)
Q Consensus 28 ~~~d~~~Al~~f~~ii~~~~e~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k 95 (288)
..+|++.|...|..+++.-+ +..|--.++..||.+....|+.++|-.+++++..=. |.-+.++.++
T Consensus 190 ~qg~y~~Aa~~f~~~~k~~P-~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~Y-P~t~aA~~Ak 255 (262)
T COG1729 190 AQGDYEDAAYIFARVVKDYP-KSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRY-PGTDAAKLAK 255 (262)
T ss_pred hcccchHHHHHHHHHHHhCC-CCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCCHHHHHHH
Confidence 46889999999999998654 344456899999999999999999999999998776 6555444444
No 262
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=55.22 E-value=1.1e+02 Score=24.68 Aligned_cols=79 Identities=22% Similarity=0.274 Sum_probs=51.7
Q ss_pred hHHHHHHHHHHHHHH---hhhhhhhHHhhhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHHHH
Q 023037 114 LLREFYQTTLKALEE---AKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQ 190 (288)
Q Consensus 114 ~~~~~~~~~l~~i~~---a~ner~~f~~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE~~ 190 (288)
.+...++.|...+.. .+|+.|.+++-++.|...- ....+.+.+... .-|..+...|-.=..
T Consensus 44 ~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~~------~~~~if~~l~~~----------~IG~~~A~fY~~wA~ 107 (126)
T PF08311_consen 44 GLLELLERCIRKFKDDERYKNDERYLKIWIKYADLSS------DPREIFKFLYSK----------GIGTKLALFYEEWAE 107 (126)
T ss_dssp HHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTBS------HHHHHHHHHHHH----------TTSTTBHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHcc------CHHHHHHHHHHc----------CccHHHHHHHHHHHH
Confidence 445566666666543 3366666666666655322 677778877665 223566677777788
Q ss_pred HHHhhcCHHHHHHHHHHH
Q 023037 191 MYTETKNNKKLKQLYQKA 208 (288)
Q Consensus 191 ~y~~~~n~~kak~~y~~A 208 (288)
++-..+|+.+|.++|..+
T Consensus 108 ~le~~~~~~~A~~I~~~G 125 (126)
T PF08311_consen 108 FLEKRGNFKKADEIYQLG 125 (126)
T ss_dssp HHHHTT-HHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHhh
Confidence 888899999999999875
No 263
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=53.95 E-value=36 Score=28.66 Aligned_cols=54 Identities=15% Similarity=0.159 Sum_probs=42.5
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 023037 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (288)
Q Consensus 29 ~~d~~~Al~~f~~ii~~~~e~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~ 84 (288)
..|..+-|..+..++..+ ..+..-.+++.|+--+++.|+|+.++.|...++..=
T Consensus 48 ~~dv~~GI~iLe~l~~~~--~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e 101 (149)
T KOG3364|consen 48 TEDVQEGIVILEDLLKSA--HPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETE 101 (149)
T ss_pred hHHHHHhHHHHHHHhhhc--CcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 345578899999999732 222234789999999999999999999999887765
No 264
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=51.40 E-value=98 Score=28.26 Aligned_cols=97 Identities=13% Similarity=0.144 Sum_probs=49.0
Q ss_pred HHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHHHHHHHhhc-CHHHHHHHHHHHHhhhccCCChhHH
Q 023037 143 CKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETK-NNKKLKQLYQKALAIKSAIPHPRIM 221 (288)
Q Consensus 143 ~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE~~~y~~~~-n~~kak~~y~~A~~~a~~I~~p~i~ 221 (288)
+..+++.|++.-+..|.--+-....+.....|.....-+++ +..... +-+..+...++|.+-+..-.+|.--
T Consensus 17 a~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~-------l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gd 89 (260)
T PF04190_consen 17 ALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIE-------LISLFPPEEPERKKFIKAAIKWSKFGSYKFGD 89 (260)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHH-------HHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--
T ss_pred HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHH-------HHHhCCCCcchHHHHHHHHHHHHccCCCCCCC
Confidence 56677888887754444333333222221122200122222 222222 2334566667777666322335555
Q ss_pred HHHHhhcchhhhhhccHHHHHHHHH
Q 023037 222 GIIRECGGKMHMAERQWADAATDFF 246 (288)
Q Consensus 222 a~I~~~~G~l~~~ekdy~~A~syF~ 246 (288)
..+.-.-|.++..+++|..|..+|.
T Consensus 90 p~LH~~~a~~~~~e~~~~~A~~Hfl 114 (260)
T PF04190_consen 90 PELHHLLAEKLWKEGNYYEAERHFL 114 (260)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHH
Confidence 5666667999999999999999884
No 265
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=51.19 E-value=2.2e+02 Score=26.93 Aligned_cols=144 Identities=13% Similarity=0.121 Sum_probs=80.2
Q ss_pred HHHhhccc-CCCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Q 023037 20 CSILEKGL-VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCIN 98 (288)
Q Consensus 20 ~y~~ak~~-~~~d~~~Al~~f~~ii~~~~e~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~ 98 (288)
.+.+|+.. ..+|..+|...|..+....+++ -.+...++..|...|+.+.+...+..+ +.-.+.+....+.
T Consensus 137 ~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~----~~~~~~la~~~l~~g~~e~A~~iL~~l-----P~~~~~~~~~~l~ 207 (304)
T COG3118 137 ALAEAKELIEAEDFGEAAPLLKQALQAAPEN----SEAKLLLAECLLAAGDVEAAQAILAAL-----PLQAQDKAAHGLQ 207 (304)
T ss_pred HHHHhhhhhhccchhhHHHHHHHHHHhCccc----chHHHHHHHHHHHcCChHHHHHHHHhC-----cccchhhHHHHHH
Confidence 44555554 4567778888888887766544 345667888999999998888777654 3322222222222
Q ss_pred H---HHHHhccCCCcchhhHHHHHHHHHHHHHHhhhhhhhHHhhhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccc
Q 023037 99 N---IMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQ 175 (288)
Q Consensus 99 ~---ild~~~~~~~~~~~~~~~~~~~~l~~i~~a~ner~~f~~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk 175 (288)
. ++......++ ...++ +....+---...-+.||..|...|+++.|.+.|-.+.+.-.... ||.
T Consensus 208 a~i~ll~qaa~~~~--~~~l~----------~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~--d~~ 273 (304)
T COG3118 208 AQIELLEQAAATPE--IQDLQ----------RRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE--DGE 273 (304)
T ss_pred HHHHHHHHHhcCCC--HHHHH----------HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc--CcH
Confidence 2 2333333332 11111 10111111235567899999999999998666666555522221 333
Q ss_pred cccchHHHHHHH
Q 023037 176 KKGSQLLEVYAI 187 (288)
Q Consensus 176 ~~~~~llEv~~l 187 (288)
.| ..|+|++-+
T Consensus 274 ~R-k~lle~f~~ 284 (304)
T COG3118 274 AR-KTLLELFEA 284 (304)
T ss_pred HH-HHHHHHHHh
Confidence 33 445555543
No 266
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.68 E-value=2.6e+02 Score=27.56 Aligned_cols=50 Identities=22% Similarity=0.452 Sum_probs=33.7
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhHHHHHHH-HHHHHHHcCCHHHHHHHHHHHHH
Q 023037 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQ-TVKLYYRLGKYKEMMDAYREMLT 82 (288)
Q Consensus 29 ~~d~~~Al~~f~~ii~~~~e~~~~~~kal~~-l~~l~~~~g~~~~~l~~~~~~l~ 82 (288)
..|+..|+.+++--.+.+.| -+.++.+ ++-.++..|+|+++++.|+-+..
T Consensus 35 ~rDytGAislLefk~~~~~E----EE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~ 85 (557)
T KOG3785|consen 35 NRDYTGAISLLEFKLNLDRE----EEDSLQLWIAHCYFHLGDYEEALNVYTFLMN 85 (557)
T ss_pred cccchhHHHHHHHhhccchh----hhHHHHHHHHHHHHhhccHHHHHHHHHHHhc
Confidence 56777888877665554321 1223333 77889999999999999986643
No 267
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=49.93 E-value=1.6e+02 Score=27.43 Aligned_cols=96 Identities=16% Similarity=0.151 Sum_probs=68.1
Q ss_pred HHHhhhhhhhH-----HhhhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHHHHHHHhhcCHHH
Q 023037 126 LEEAKNERLWF-----KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKK 200 (288)
Q Consensus 126 i~~a~ner~~f-----~~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE~~~y~~~~n~~k 200 (288)
.+|-..+|+-| ++..+++..+...|.++.+.+.+++|-..-+- ++ ..|.--++.|...|+..+
T Consensus 138 ~~WV~~~R~~l~e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~----~E--------~~~~~lm~~y~~~g~~~~ 205 (280)
T COG3629 138 DEWVLEQRRALEELFIKALTKLAEALIACGRADAVIEHLERLIELDPY----DE--------PAYLRLMEAYLVNGRQSA 205 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc----ch--------HHHHHHHHHHHHcCCchH
Confidence 34555555555 78889999999999999988888888766211 23 456677889999999999
Q ss_pred HHHHHHHHHh-hhcc--CCC-hhHHHHHHhhcchhhh
Q 023037 201 LKQLYQKALA-IKSA--IPH-PRIMGIIRECGGKMHM 233 (288)
Q Consensus 201 ak~~y~~A~~-~a~~--I~~-p~i~a~I~~~~G~l~~ 233 (288)
|.+.|.+..+ .+.. |.. |.+........|..++
T Consensus 206 ai~~y~~l~~~~~edlgi~P~~~~~~~y~~~~~~~~~ 242 (280)
T COG3629 206 AIRAYRQLKKTLAEELGIDPAPELRALYEEILRQDPL 242 (280)
T ss_pred HHHHHHHHHHHhhhhcCCCccHHHHHHHHHHhccccc
Confidence 9999998877 4443 444 5555555555444444
No 268
>PLN02789 farnesyltranstransferase
Probab=49.05 E-value=2.4e+02 Score=26.64 Aligned_cols=130 Identities=12% Similarity=0.059 Sum_probs=74.4
Q ss_pred HHHHHhhcccCCCCHHHHHHHHHHhhcCCcc-chhhHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHhhhhhhhHHH
Q 023037 18 VLCSILEKGLVETDPEGALAGFAEVVAMEPE-KAEWGFKALKQTVKLYYRLG-KYKEMMDAYREMLTYIKSAVTRNYSEK 95 (288)
Q Consensus 18 ~~~y~~ak~~~~~d~~~Al~~f~~ii~~~~e-~~~~~~kal~~l~~l~~~~g-~~~~~l~~~~~~l~~~~~~v~ka~~~k 95 (288)
+.-|..|--......+.|+..+.++|..+++ ..-|. .-+.++...| +++++++.+.+++..- + |++.+=
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~-----~R~~iL~~L~~~l~eeL~~~~~~i~~n-p---knyqaW 109 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWH-----FRRLCLEALDADLEEELDFAEDVAEDN-P---KNYQIW 109 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHH-----HHHHHHHHcchhHHHHHHHHHHHHHHC-C---cchHHh
Confidence 3344444434456778999999999988875 34454 3345555667 6789999988887654 3 333333
Q ss_pred HHHH-HHHHhccCCCcchhhHHHHHHHHHHHHHHhhhhhhhHHhhhhHHHHHhhhcchhHHHHHHHHHHHh
Q 023037 96 CINN-IMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKS 165 (288)
Q Consensus 96 ~i~~-ild~~~~~~~~~~~~~~~~~~~~l~~i~~a~ner~~f~~~~kL~~lyl~~~~y~~~~~ll~elkk~ 165 (288)
.-|. ++..++. . ....-++.+.+.++-. .+-+.+-...+-++...|.|+++.+...++.+.
T Consensus 110 ~~R~~~l~~l~~--~----~~~~el~~~~kal~~d---pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~ 171 (320)
T PLN02789 110 HHRRWLAEKLGP--D----AANKELEFTRKILSLD---AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE 171 (320)
T ss_pred HHHHHHHHHcCc--h----hhHHHHHHHHHHHHhC---cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3222 2333321 0 1122344444444421 222233344555566667899998888888777
No 269
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=48.32 E-value=52 Score=33.66 Aligned_cols=64 Identities=16% Similarity=0.221 Sum_probs=50.2
Q ss_pred CCCHHHHHHHHHHhhcCCc-cchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Q 023037 29 ETDPEGALAGFAEVVAMEP-EKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCIN 98 (288)
Q Consensus 29 ~~d~~~Al~~f~~ii~~~~-e~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~ 98 (288)
.++.+.|++.|+..+..+| +..=| +.||-.++.-.+.++|++.|++.+.+- |..-|++--=.|.
T Consensus 443 s~efdraiDcf~~AL~v~Pnd~~lW-----NRLGAtLAN~~~s~EAIsAY~rALqLq-P~yVR~RyNlgIS 507 (579)
T KOG1125|consen 443 SGEFDRAVDCFEAALQVKPNDYLLW-----NRLGATLANGNRSEEAISAYNRALQLQ-PGYVRVRYNLGIS 507 (579)
T ss_pred chHHHHHHHHHHHHHhcCCchHHHH-----HHhhHHhcCCcccHHHHHHHHHHHhcC-CCeeeeehhhhhh
Confidence 4566799999999998877 45667 789999999999999999999999887 7766655444443
No 270
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=48.18 E-value=97 Score=28.94 Aligned_cols=34 Identities=21% Similarity=0.318 Sum_probs=27.7
Q ss_pred hhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCC
Q 023037 139 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGT 172 (288)
Q Consensus 139 ~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~ 172 (288)
..++-..|+..|+..++...++.+++...++.|.
T Consensus 190 ~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi 223 (280)
T COG3629 190 YLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGI 223 (280)
T ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCC
Confidence 4567788999999999999999999986665554
No 271
>PF01997 Translin: Translin family; InterPro: IPR002848 Translins are DNA-binding proteins that specifically recognise consensus sequences at the breakpoint junctions in chromosomal translocations, mostly involving immunoglobulin (Ig)/T-cell receptor gene segments. They seem to recognise single-stranded DNA ends generated by staggered breaks occuring at recombination hot spots []. Translin folds into an alpha-alpha superhelix, consisting of two curved layers of alpha/alpha topology [, ].; GO: 0043565 sequence-specific DNA binding; PDB: 3QB5_K 3PJA_L 1J1J_D 3RIU_C 3AXJ_B 4DG7_C 2QVA_C 2QRX_A 1KEY_C.
Probab=48.00 E-value=90 Score=27.27 Aligned_cols=122 Identities=13% Similarity=0.164 Sum_probs=0.0
Q ss_pred hhHHhhhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHH------HHHHHHhhcCHHHHHHHHHH
Q 023037 134 LWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAI------EIQMYTETKNNKKLKQLYQK 207 (288)
Q Consensus 134 ~~f~~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~l------E~~~y~~~~n~~kak~~y~~ 207 (288)
|-+....|.+...+.+++.+.+.+++.+++.. .--+--..- ....|...+.+.-+-+-|-.
T Consensus 12 Rdi~~~Sk~~I~~lhr~~~~~~~~~l~~a~~~-------------l~~l~~~~~~l~~~~~~~~~~y~~~~s~~lQE~vE 78 (200)
T PF01997_consen 12 RDITRLSKKIIFALHRIDQEKAEKILEEAEEK-------------LKELKKLLKQLAELPGHPFYRYHGAYSPGLQEYVE 78 (200)
T ss_dssp HHHHHHHHHHHHHCCTCTTHHHHHHHHHHHHH-------------HHHHHCHSHHHHHCTTCGHHHHGGGTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccccchHHHHHHHHHH-------------HHHHHHHHhhhcccCCCcHHHHHHHHHHHHHHHHH
Q ss_pred HHhh-------------hcc--------------CCC-hhHHHHHHhhc-----chhhhhhccHHHHHHHH------HHH
Q 023037 208 ALAI-------------KSA--------------IPH-PRIMGIIRECG-----GKMHMAERQWADAATDF------FEA 248 (288)
Q Consensus 208 A~~~-------------a~~--------------I~~-p~i~a~I~~~~-----G~l~~~ekdy~~A~syF------~Ea 248 (288)
|.+. .-. |+. ++++|..|++| .+=..-.||+..|...+ |.+
T Consensus 79 a~~f~~~l~~~~L~t~~ev~~~l~~~~~~~~~~~v~~~dYL~Gl~DltGEL~R~ai~~v~~gd~~~~~~i~~f~~~l~~~ 158 (200)
T PF01997_consen 79 AISFYHYLETGRLLTPEEVGEILGFSEDDEDRFHVTPEDYLLGLADLTGELMRYAINSVTKGDYERPEKILEFMRELYSG 158 (200)
T ss_dssp HHHHHHHHHHSSS--HHHHHHHCTCBSSTSCSSB--HHHHHHHHHHHHHHHHHHHHHHHHTT-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHhhccccccceecCHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHH
Q ss_pred Hhhhhh-----hCCh--hHHHHhHHHH
Q 023037 249 FKNYDE-----AGNQ--RRIQCLKYLV 268 (288)
Q Consensus 249 F~~y~e-----~g~~--~a~~~LKY~~ 268 (288)
|..++- -+++ ++..++||.|
T Consensus 159 ~~~l~~~~~~~~n~~LrkK~d~~k~~l 185 (200)
T PF01997_consen 159 FQLLNLPDAIVKNDELRKKFDVLKYSL 185 (200)
T ss_dssp HHTSGGTTGS--SHHHHHHHHCHHHHH
T ss_pred HHhCcchhhcccchhHHHHHHHHHHHH
No 272
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=45.87 E-value=32 Score=30.57 Aligned_cols=45 Identities=18% Similarity=0.391 Sum_probs=31.2
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHH
Q 023037 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEM 73 (288)
Q Consensus 29 ~~d~~~Al~~f~~ii~~~~e~~~~~~kal~~l~~l~~~~g~~~~~ 73 (288)
..||++|+..+.++++...+..+.--.-+..|+.+|.++|+++.+
T Consensus 153 krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 153 KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 678889999999998875421111123366788888898888876
No 273
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=45.63 E-value=3.6e+02 Score=27.86 Aligned_cols=97 Identities=19% Similarity=0.219 Sum_probs=68.0
Q ss_pred hhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhHHHHHHhhcchh
Q 023037 152 YGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKM 231 (288)
Q Consensus 152 y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE~~~y~~~~n~~kak~~y~~A~~~a~~I~~p~i~a~I~~~~G~l 231 (288)
+++..+..+++++.... |. +++ +-.=++.-.+..-++-||.++.+||.-.-.-+|-.+-+...|
T Consensus 347 ~~~~~~~~~~ll~~~~~-----~~---tLv---~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mE----- 410 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDI-----DL---TLV---YCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALME----- 410 (656)
T ss_pred hhhhHHHHHHHHhhhcc-----CC---cee---hhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHH-----
Confidence 44467777777777221 11 222 222234445556788899999999998888877888887776
Q ss_pred hhhhccHHHHHHHHHHHHhhhhhhCChhHHHHhHHHH
Q 023037 232 HMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLV 268 (288)
Q Consensus 232 ~~~ekdy~~A~syF~EaF~~y~e~g~~~a~~~LKY~~ 268 (288)
|.+.||+.+|+.-|--+++-|. ++|.- ++||+.
T Consensus 411 y~cskD~~~AfrIFeLGLkkf~--d~p~y--v~~Yld 443 (656)
T KOG1914|consen 411 YYCSKDKETAFRIFELGLKKFG--DSPEY--VLKYLD 443 (656)
T ss_pred HHhcCChhHHHHHHHHHHHhcC--CChHH--HHHHHH
Confidence 7899999999999999999995 33433 355654
No 274
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=45.23 E-value=35 Score=23.55 Aligned_cols=42 Identities=19% Similarity=0.209 Sum_probs=31.1
Q ss_pred HHHHhhccc-CCCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHH
Q 023037 19 LCSILEKGL-VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVK 62 (288)
Q Consensus 19 ~~y~~ak~~-~~~d~~~Al~~f~~ii~~~~e~~~~~~kal~~l~~ 62 (288)
-+||-|=+. +-+|+++|.+....+++.+|+..+ .++|+.+++
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Q--a~~L~~~i~ 45 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQ--AQSLKELIE 45 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HH--HHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHH--HHHHHHHHH
Confidence 467777774 789999999999999999876444 677776654
No 275
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=45.16 E-value=2.9e+02 Score=26.50 Aligned_cols=129 Identities=9% Similarity=0.060 Sum_probs=82.5
Q ss_pred HHHHHHHHhhc-CCccc-hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhccCCCcc
Q 023037 34 GALAGFAEVVA-MEPEK-AEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQN 111 (288)
Q Consensus 34 ~Al~~f~~ii~-~~~e~-~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~~~~~~~~~ 111 (288)
+-|+.|.+-|. .+++. ...+..|-.+++.-|++.++.+...++..++..-- ..+-.+..-.+..| +++-+- .+
T Consensus 93 eki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a--~stg~KiDv~l~ki--Rlg~~y-~d 167 (412)
T COG5187 93 EKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDA--MSTGLKIDVFLCKI--RLGLIY-GD 167 (412)
T ss_pred HHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH--HhcccchhhHHHHH--HHHHhh-cc
Confidence 44566644443 33333 34578899999999999999999999998876543 22334444444332 122221 34
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhhHHhhhhHHHHHhhhcchhHHHHHHHHHHHhcc
Q 023037 112 FSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQ 167 (288)
Q Consensus 112 ~~~~~~~~~~~l~~i~~a~ner~~f~~~~kL~~lyl~~~~y~~~~~ll~elkk~~~ 167 (288)
...+++-++.....++..++=.|-=|...-.|...+-.++|.+|-.|+-+......
T Consensus 168 ~~vV~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~ 223 (412)
T COG5187 168 RKVVEESLEVADDIIEKGGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTFE 223 (412)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhcccc
Confidence 55778888888888886553322223444456666778899998888888776643
No 276
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=44.37 E-value=1.2e+02 Score=24.37 Aligned_cols=80 Identities=10% Similarity=0.125 Sum_probs=45.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHHHHhhhhhhhH---
Q 023037 60 TVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWF--- 136 (288)
Q Consensus 60 l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~~~~~~~~~~~~~~~~~~~~l~~i~~a~ner~~f--- 136 (288)
+-.-+-..|.-..+..++.+++..+ ...+ ....-.+++.+++.+++-+.+.+-+|
T Consensus 32 ~~~~~p~~~~~~~L~~lLer~~~~f-~~~~---------------------~Y~nD~RylkiWi~ya~~~~~~~~if~~l 89 (126)
T PF08311_consen 32 IEENYPSGGKQSGLLELLERCIRKF-KDDE---------------------RYKNDERYLKIWIKYADLSSDPREIFKFL 89 (126)
T ss_dssp HHHHCTTCCCCHHHHHHHHHHHHHH-TTSG---------------------GGTT-HHHHHHHHHHHTTBSHHHHHHHHH
T ss_pred HHHHCCCCCchhHHHHHHHHHHHHH-hhhH---------------------hhcCCHHHHHHHHHHHHHccCHHHHHHHH
Confidence 3333333555556666666666665 2222 23334555566666665554444444
Q ss_pred ----------HhhhhHHHHHhhhcchhHHHHHHHH
Q 023037 137 ----------KTNLKLCKIWFDMGEYGRMSKILKE 161 (288)
Q Consensus 137 ----------~~~~kL~~lyl~~~~y~~~~~ll~e 161 (288)
.....-|..+-..|++.+|.++++.
T Consensus 90 ~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 90 YSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 3455677778888999999888764
No 277
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.15 E-value=3e+02 Score=26.49 Aligned_cols=56 Identities=14% Similarity=0.240 Sum_probs=40.6
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhh
Q 023037 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVT 89 (288)
Q Consensus 29 ~~d~~~Al~~f~~ii~~~~e~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ 89 (288)
+..+..||+....-.+..+ + .--++.-||-.|....++..+.++|.++.... |..+
T Consensus 23 d~ry~DaI~~l~s~~Er~p-~---~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~-P~~~ 78 (459)
T KOG4340|consen 23 DARYADAIQLLGSELERSP-R---SRAGLSLLGYCYYRLQEFALAAECYEQLGQLH-PELE 78 (459)
T ss_pred HhhHHHHHHHHHHHHhcCc-c---chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-hHHH
Confidence 4455667776665444322 1 23577889999999999999999999998777 7544
No 278
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=43.54 E-value=3.7e+02 Score=27.39 Aligned_cols=112 Identities=12% Similarity=0.174 Sum_probs=57.8
Q ss_pred cCCCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhcc
Q 023037 27 LVETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSG 106 (288)
Q Consensus 27 ~~~~d~~~Al~~f~~ii~~~~e~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~~~~ 106 (288)
-.+.||.+-++.-++.++.++| +..|+.-|+.= ...-..++.++|++.+..-+....+.... ...+
T Consensus 179 WRERnp~aRIkaA~eALei~pd----CAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~-------~~~g- 244 (539)
T PF04184_consen 179 WRERNPQARIKAAKEALEINPD----CADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQFL-------QHHG- 244 (539)
T ss_pred HhcCCHHHHHHHHHHHHHhhhh----hhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhhhh-------hccc-
Confidence 4577888888888888776543 33343333321 11234566666666555442222211100 0000
Q ss_pred CCCcchhhHHHHHHHHHHHHHHhhhhhhhHHhhhhHHHHHhhhcchhHHHHHHHHHHHhcc
Q 023037 107 SASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQ 167 (288)
Q Consensus 107 ~~~~~~~~~~~~~~~~l~~i~~a~ner~~f~~~~kL~~lyl~~~~y~~~~~ll~elkk~~~ 167 (288)
.+++... .++-+.-+.+.-|||...-..|+..+|.+..+++.|..+
T Consensus 245 ----------~~~e~~~-----~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p 290 (539)
T PF04184_consen 245 ----------HFWEAWH-----RRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFP 290 (539)
T ss_pred ----------chhhhhh-----ccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCC
Confidence 0011000 011122235666788888888888888888888877643
No 279
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=43.31 E-value=91 Score=29.68 Aligned_cols=58 Identities=10% Similarity=0.006 Sum_probs=43.4
Q ss_pred HhhhhhhhH-----HhhhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHHHHHHHhhcC
Q 023037 128 EAKNERLWF-----KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKN 197 (288)
Q Consensus 128 ~a~ner~~f-----~~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE~~~y~~~~n 197 (288)
|+.++|-.| ++-.+-++-|++.|.+++|.++.+.+.++-+ +-=+++-.-++++..+|+
T Consensus 266 Waedererle~ly~kllgkva~~yle~g~~neAi~l~qr~ltldp------------L~e~~nk~lm~~la~~gD 328 (361)
T COG3947 266 WAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQRALTLDP------------LSEQDNKGLMASLATLGD 328 (361)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCh------------hhhHHHHHHHHHHHHhcc
Confidence 888887777 4444678889999999999999999999822 222455566677777776
No 280
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=43.14 E-value=2.4e+02 Score=25.09 Aligned_cols=56 Identities=13% Similarity=0.145 Sum_probs=43.1
Q ss_pred HhhhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHHHHHHHhhcCHHHH
Q 023037 137 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKL 201 (288)
Q Consensus 137 ~~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE~~~y~~~~n~~ka 201 (288)
.+..-||..|. +.+-+++..++-.+....+.. | .+=.||+..-+-+|+.++|+.+|
T Consensus 142 elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~----~----~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 142 ELQYALATYYT-KRDPEKTIQLLLRALELSNPD----D----NFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCC----C----CCCHHHHHHHHHHHHHhcchhhh
Confidence 45667887777 778888999999888884432 2 34469999999999999998865
No 281
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=42.89 E-value=91 Score=23.70 Aligned_cols=67 Identities=16% Similarity=0.307 Sum_probs=43.4
Q ss_pred HHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhcc
Q 023037 35 ALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSG 106 (288)
Q Consensus 35 Al~~f~~ii~~~~e~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~~~~ 106 (288)
.+..+++-++.+|+ . ..+..+++..+...|+++++++.+-.++.-- +......+-+.+-.+++.++.
T Consensus 7 ~~~al~~~~a~~P~--D--~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d-r~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 7 DIAALEAALAANPD--D--LDARYALADALLAAGDYEEALDQLLELVRRD-RDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHHHSTT-----HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--TTCCCCHHHHHHHHHHHHH-T
T ss_pred cHHHHHHHHHcCCC--C--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-ccccccHHHHHHHHHHHHcCC
Confidence 34556666665543 2 2677899999999999999998876665544 444455566667666666664
No 282
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=41.31 E-value=1e+02 Score=22.80 Aligned_cols=27 Identities=15% Similarity=0.309 Sum_probs=21.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 023037 58 KQTVKLYYRLGKYKEMMDAYREMLTYI 84 (288)
Q Consensus 58 ~~l~~l~~~~g~~~~~l~~~~~~l~~~ 84 (288)
.+-+.-.-+.|+|++|+.+|.+.+.+|
T Consensus 10 ~~~Ave~D~~g~y~eAl~~Y~~aie~l 36 (77)
T cd02683 10 LKRAVELDQEGRFQEALVCYQEGIDLL 36 (77)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 333445567799999999999999988
No 283
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=41.03 E-value=63 Score=33.58 Aligned_cols=72 Identities=14% Similarity=0.151 Sum_probs=55.8
Q ss_pred hhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCCh
Q 023037 139 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP 218 (288)
Q Consensus 139 ~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE~~~y~~~~n~~kak~~y~~A~~~a~~I~~p 218 (288)
-.+||++++..|-..+|..++.+...+.. ++. =.+...+++|..++|+.+|.+++..|+.... .||
T Consensus 645 ~v~la~~~~~~~~~~da~~~l~q~l~~~~-----sep-------l~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~--~~~ 710 (886)
T KOG4507|consen 645 LVNLANLLIHYGLHLDATKLLLQALAINS-----SEP-------LTFLSLGNAYLALKNISGALEAFRQALKLTT--KCP 710 (886)
T ss_pred HHHHHHHHHHhhhhccHHHHHHHHHhhcc-----cCc-------hHHHhcchhHHHHhhhHHHHHHHHHHHhcCC--CCh
Confidence 45899999999988889888888877753 333 3578889999999999999999999987654 345
Q ss_pred hHHHHH
Q 023037 219 RIMGII 224 (288)
Q Consensus 219 ~i~a~I 224 (288)
.++-.+
T Consensus 711 ~~~~~l 716 (886)
T KOG4507|consen 711 ECENSL 716 (886)
T ss_pred hhHHHH
Confidence 544443
No 284
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=40.55 E-value=1.9e+02 Score=23.62 Aligned_cols=47 Identities=17% Similarity=0.270 Sum_probs=31.9
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhH------HhhhhH-------HHHHhhhcchhHHHHHHH
Q 023037 114 LLREFYQTTLKALEEAKNERLWF------KTNLKL-------CKIWFDMGEYGRMSKILK 160 (288)
Q Consensus 114 ~~~~~~~~~l~~i~~a~ner~~f------~~~~kL-------~~lyl~~~~y~~~~~ll~ 160 (288)
.-.+++.+++.+++.+.+.+-+| .+-.++ |..+-..|+|.+|.++++
T Consensus 64 nD~RyLkiWi~ya~~~~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 64 NDPRYLKIWLKYADNCDEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 44677788888888777666666 333344 555557788888887765
No 285
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=40.27 E-value=50 Score=30.99 Aligned_cols=62 Identities=16% Similarity=0.072 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHhhhccCCChhHHHHHHhhcchhhhhhccHHHHHHHHHHHHhhhhhhCChh
Q 023037 198 NKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQR 259 (288)
Q Consensus 198 ~~kak~~y~~A~~~a~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EaF~~y~e~g~~~ 259 (288)
..-++.++..|+-.|..-.+...+|-+...-|.-++.-+||+.|.+||--|.+.|....-|.
T Consensus 55 ~~n~~e~~d~ALm~Ae~r~D~~~IG~~~~~~~v~~~~ik~Ye~a~~~F~~A~~~~~~d~L~~ 116 (368)
T COG5091 55 MENAKELLDKALMTAEGRGDRSKIGLVNFRYFVHFFNIKDYELAQSYFKKAKNLYVDDTLPL 116 (368)
T ss_pred hhhHHHHHHHHHHhhhccCCcceeeeehhhhHHHhhhHHHHHHHHHHHHHHHHHhhcccchH
Confidence 45588999999999999999999999999999999999999999999999999987544443
No 286
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=40.26 E-value=2.8e+02 Score=28.63 Aligned_cols=104 Identities=18% Similarity=0.223 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhccCCCc---chhhHHHHHHHHHHHHHHh
Q 023037 53 GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQ---NFSLLREFYQTTLKALEEA 129 (288)
Q Consensus 53 ~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~~~~~~~~---~~~~~~~~~~~~l~~i~~a 129 (288)
..+.+.+.+.-.-..|++++|+.+|.-.-.+- ++-.++|..|..+-..+.. ........+.++.+.++.-
T Consensus 413 ~~~i~~~~A~~~e~~g~~~dAi~Ly~La~~~d-------~vl~lln~~Ls~~l~~~~~~~~~~s~~~~l~~la~~i~~~y 485 (613)
T PF04097_consen 413 LREIIEQAAREAEERGRFEDAILLYHLAEEYD-------KVLSLLNRLLSQVLSQPSSSSLSDSERERLIELAKEILERY 485 (613)
T ss_dssp HHHHHHHHHHHHHHCT-HHHHHHHHHHTT-HH-------HHHHHHHHHHHHHHHCSSTSSSSSTTTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHhhHH-------HHHHHHHHHHHHHHcCccccccccchhhhHHHHHHHHHHHH
Confidence 45677788888999999999999997665443 2334555555433322221 1223344455555554432
Q ss_pred h-----------hhhhhHHhhhhHHH--HHhhhcchhHHHHHHHHHH
Q 023037 130 K-----------NERLWFKTNLKLCK--IWFDMGEYGRMSKILKELH 163 (288)
Q Consensus 130 ~-----------ner~~f~~~~kL~~--lyl~~~~y~~~~~ll~elk 163 (288)
. ..+-+|.+-++++. -++..|+|++|...+.++.
T Consensus 486 ~~~~~~~~~~~~~~~~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~L~ 532 (613)
T PF04097_consen 486 KSNPHISSKVSRKNRETFQLLLDLAEFFDLYHAGQYEQALDIIEKLD 532 (613)
T ss_dssp TTSHHHHTTS-HHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHTT
T ss_pred HhCcchHhhccHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhCC
Confidence 2 23556666665555 4579999999998888886
No 287
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=40.09 E-value=3.2e+02 Score=27.63 Aligned_cols=100 Identities=11% Similarity=0.037 Sum_probs=70.6
Q ss_pred HHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHH--HHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCC-h
Q 023037 142 LCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLL--EVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH-P 218 (288)
Q Consensus 142 L~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~ll--Ev~~lE~~~y~~~~n~~kak~~y~~A~~~a~~I~~-p 218 (288)
.|-++-.+|+++++.++..++-+..+. +..++ ||+.--+-=.+-++|++.+...+-..+...-.-++ |
T Consensus 12 Qgf~Lqkq~~~~esEkifskI~~e~~~---------~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~ 82 (549)
T PF07079_consen 12 QGFILQKQKKFQESEKIFSKIYDEKES---------SPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLP 82 (549)
T ss_pred hhHHHHHHhhhhHHHHHHHHHHHHhhc---------chHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHH
Confidence 355666788999998888887655221 13343 66655555556789999999888877766654444 7
Q ss_pred hHHHHHHhhcchhhhhhccHHHHHHHHHHHHhhhhhhCC
Q 023037 219 RIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGN 257 (288)
Q Consensus 219 ~i~a~I~~~~G~l~~~ekdy~~A~syF~EaF~~y~e~g~ 257 (288)
..+|. ++..+|+|.+|...|.-.++.-....+
T Consensus 83 LF~~L-------~~Y~~k~~~kal~~ls~w~~~~~~~~~ 114 (549)
T PF07079_consen 83 LFKAL-------VAYKQKEYRKALQALSVWKEQIKGTES 114 (549)
T ss_pred HHHHH-------HHHHhhhHHHHHHHHHHHHhhhccccc
Confidence 66654 478999999999999988887554443
No 288
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=39.75 E-value=1.4e+02 Score=21.60 Aligned_cols=28 Identities=21% Similarity=0.348 Sum_probs=21.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhhh
Q 023037 60 TVKLYYRLGKYKEMMDAYREMLTYIKSAV 88 (288)
Q Consensus 60 l~~l~~~~g~~~~~l~~~~~~l~~~~~~v 88 (288)
-+.-.-..|++++++.+|.+.+.++ ...
T Consensus 12 ~Av~~D~~g~y~eA~~~Y~~aie~l-~~~ 39 (75)
T cd02678 12 KAIEEDNAGNYEEALRLYQHALEYF-MHA 39 (75)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHH-HHH
Confidence 3344557799999999999999988 443
No 289
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=38.52 E-value=5.2e+02 Score=27.59 Aligned_cols=139 Identities=8% Similarity=0.092 Sum_probs=67.0
Q ss_pred hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH------HhhhhhhhHHHHHHHHHHHhccCCC-------cchhhHH
Q 023037 50 AEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYI------KSAVTRNYSEKCINNIMDFVSGSAS-------QNFSLLR 116 (288)
Q Consensus 50 ~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~------~~~v~ka~~~k~i~~ild~~~~~~~-------~~~~~~~ 116 (288)
..|.- =.+++.++.+.|-...|+..+.++--.- ....-..+++.+++..++ +-|+ ++.-.-.
T Consensus 396 p~Wq~--q~~laell~slGitksAl~I~Erlemw~~vi~CY~~lg~~~kaeei~~q~le---k~~d~~lyc~LGDv~~d~ 470 (777)
T KOG1128|consen 396 PIWQL--QRLLAELLLSLGITKSALVIFERLEMWDPVILCYLLLGQHGKAEEINRQELE---KDPDPRLYCLLGDVLHDP 470 (777)
T ss_pred CcchH--HHHHHHHHHHcchHHHHHHHHHhHHHHHHHHHHHHHhcccchHHHHHHHHhc---CCCcchhHHHhhhhccCh
Confidence 45633 3467777777777777777666542221 022235667777777665 1111 1111112
Q ss_pred HHHHHHHHHHHHhhhhhhhHHhhhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHHHHHHHhhc
Q 023037 117 EFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETK 196 (288)
Q Consensus 117 ~~~~~~l~~i~~a~ner~~f~~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE~~~y~~~~ 196 (288)
..|+.+.+.- ..+..+...-+|.+.+..++|.++.+.++...+. +.+.++++.-=+=++-.+.
T Consensus 471 s~yEkawEls-----n~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~------------nplq~~~wf~~G~~ALqle 533 (777)
T KOG1128|consen 471 SLYEKAWELS-----NYISARAQRSLALLILSNKDFSEADKHLERSLEI------------NPLQLGTWFGLGCAALQLE 533 (777)
T ss_pred HHHHHHHHHh-----hhhhHHHHHhhccccccchhHHHHHHHHHHHhhc------------CccchhHHHhccHHHHHHh
Confidence 3334433331 1222234444555556667777666666555544 0233344444444444444
Q ss_pred CHHHHHHHHHHHHh
Q 023037 197 NNKKLKQLYQKALA 210 (288)
Q Consensus 197 n~~kak~~y~~A~~ 210 (288)
+...+-.+|+.+.+
T Consensus 534 k~q~av~aF~rcvt 547 (777)
T KOG1128|consen 534 KEQAAVKAFHRCVT 547 (777)
T ss_pred hhHHHHHHHHHHhh
Confidence 44444444444433
No 290
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=38.50 E-value=43 Score=26.50 Aligned_cols=27 Identities=15% Similarity=0.343 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 023037 56 ALKQTVKLYYRLGKYKEMMDAYREMLT 82 (288)
Q Consensus 56 al~~l~~l~~~~g~~~~~l~~~~~~l~ 82 (288)
-+..|+.+|...|.+++|+++.+++-.
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 346799999999999999999988866
No 291
>PRK14562 haloacid dehalogenase superfamily protein; Provisional
Probab=36.20 E-value=3e+02 Score=24.21 Aligned_cols=55 Identities=16% Similarity=0.320 Sum_probs=39.8
Q ss_pred cCCC-hhHHHHHHhhcchhhh-----hhccHHHHHHH------HHHHHhhhhhh-----CChhHHHHhHHHH
Q 023037 214 AIPH-PRIMGIIRECGGKMHM-----AERQWADAATD------FFEAFKNYDEA-----GNQRRIQCLKYLV 268 (288)
Q Consensus 214 ~I~~-p~i~a~I~~~~G~l~~-----~ekdy~~A~sy------F~EaF~~y~e~-----g~~~a~~~LKY~~ 268 (288)
.|+. ++++|..|..|=.+=+ ..||++.|... .|..|..++-. |=.++..++||.|
T Consensus 108 ~v~~~dYLlGl~Dl~GEL~R~al~~l~~gd~~~~~~i~~fm~~ly~~~~~l~~~~~~~~~LRkK~D~~r~~l 179 (204)
T PRK14562 108 GVPEAAYLLGLADAIGELRRHILELLRKGEIEEAEKLLEIMEEIYEFLMTLDYPDAITPGLRRKQDVARSLL 179 (204)
T ss_pred CCCHHHHHhHHHHHHhHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHhcCCCCcccchhhHHHHHHHHHH
Confidence 3666 8999999998876643 56889888654 56666666543 3358889999976
No 292
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=36.01 E-value=6.1e+02 Score=27.65 Aligned_cols=192 Identities=11% Similarity=-0.003 Sum_probs=116.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhh-hhhh----hHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHHHHhhhh--hh
Q 023037 62 KLYYRLGKYKEMMDAYREMLTYIKSA-VTRN----YSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE--RL 134 (288)
Q Consensus 62 ~l~~~~g~~~~~l~~~~~~l~~~~~~-v~ka----~~~k~i~~ild~~~~~~~~~~~~~~~~~~~~l~~i~~a~ne--r~ 134 (288)
=....+++++++-.++.++..+++.. .+.. ...-.++.++...- + ..+...+++...++.-... +-
T Consensus 423 W~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~---~----~~e~a~~lar~al~~L~~~~~~~ 495 (894)
T COG2909 423 WLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNR---G----DPEEAEDLARLALVQLPEAAYRS 495 (894)
T ss_pred HHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhc---C----CHHHHHHHHHHHHHhcccccchh
Confidence 34568899999999999999999441 1111 12234444444332 2 3344444555544433222 11
Q ss_pred hHHhhhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhcc
Q 023037 135 WFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSA 214 (288)
Q Consensus 135 ~f~~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE~~~y~~~~n~~kak~~y~~A~~~a~~ 214 (288)
-.-+.+.++.+..-.|+|++|..++++..+....- |-- -+.+=+...++.+...+| ..+++--.+++..-..
T Consensus 496 r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~---~~~---~l~~~~~~~~s~il~~qG--q~~~a~~~~~~~~~~~ 567 (894)
T COG2909 496 RIVALSVLGEAAHIRGELTQALALMQQAEQMARQH---DVY---HLALWSLLQQSEILEAQG--QVARAEQEKAFNLIRE 567 (894)
T ss_pred hhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHc---ccH---HHHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHH
Confidence 12456788999999999999999998888775443 222 333556677899999999 3344444444433332
Q ss_pred C------CC-hhHHHHHHhhcchhhhhhccHHHHHHHHHHHHhhhhhhCChhHHHHhHHHHHHHHh
Q 023037 215 I------PH-PRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLANML 273 (288)
Q Consensus 215 I------~~-p~i~a~I~~~~G~l~~~ekdy~~A~syF~EaF~~y~e~g~~~a~~~LKY~~L~~il 273 (288)
. -| +.+.+.+ +.+....+ ++.|-..++-+++-=.+.....-..++-+.+||++-
T Consensus 568 q~l~q~~~~~f~~~~r~----~ll~~~~r-~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~ 628 (894)
T COG2909 568 QHLEQKPRHEFLVRIRA----QLLRAWLR-LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELE 628 (894)
T ss_pred HHhhhcccchhHHHHHH----HHHHHHHH-HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHH
Confidence 2 11 3333333 34445555 788888877777766666666777777776676654
No 293
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=35.75 E-value=3.3e+02 Score=24.50 Aligned_cols=98 Identities=15% Similarity=0.151 Sum_probs=73.6
Q ss_pred hhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhcc--CC
Q 023037 139 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSA--IP 216 (288)
Q Consensus 139 ~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE~~~y~~~~n~~kak~~y~~A~~~a~~--I~ 216 (288)
..+|++-..+.|+|.++....++...-+-- +|. . +.+--.+..+.+++...+...+..-.....+ -|
T Consensus 92 r~rLa~al~elGr~~EA~~hy~qalsG~fA----~d~---a----~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~p 160 (251)
T COG4700 92 RYRLANALAELGRYHEAVPHYQQALSGIFA----HDA---A----MLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSP 160 (251)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHhccccC----CCH---H----HHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCC
Confidence 468999999999999999999988765332 565 3 3444567778899999999999887765544 34
Q ss_pred ChhHHHHHHhhcchhhhhhccHHHHHHHHHHHHhhhh
Q 023037 217 HPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYD 253 (288)
Q Consensus 217 ~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EaF~~y~ 253 (288)
||. +.-|..+.-.|.|..|.+.|--+...|.
T Consensus 161 d~~------Ll~aR~laa~g~~a~Aesafe~a~~~yp 191 (251)
T COG4700 161 DGH------LLFARTLAAQGKYADAESAFEVAISYYP 191 (251)
T ss_pred Cch------HHHHHHHHhcCCchhHHHHHHHHHHhCC
Confidence 432 2345556777889999999999988885
No 294
>PRK15331 chaperone protein SicA; Provisional
Probab=35.49 E-value=1.2e+02 Score=26.13 Aligned_cols=51 Identities=10% Similarity=0.022 Sum_probs=33.9
Q ss_pred CCCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 023037 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLT 82 (288)
Q Consensus 28 ~~~d~~~Al~~f~~ii~~~~e~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~ 82 (288)
..+++++|...|+-..-.+.-..+ =...||-++-.+|+|++|++.|.....
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d~~n~~----Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~ 99 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYDFYNPD----YTMGLAAVCQLKKQFQKACDLYAVAFT 99 (165)
T ss_pred HCCCHHHHHHHHHHHHHhCcCcHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788888888877765542222 245677777777788888877765543
No 295
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=35.08 E-value=4.2e+02 Score=25.55 Aligned_cols=74 Identities=18% Similarity=0.107 Sum_probs=53.6
Q ss_pred eccchhhhHHHHHHhhccc-CCCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHHH
Q 023037 9 FSDEFTVSRVLCSILEKGL-VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYY--RLGKYKEMMDAYREMLTYI 84 (288)
Q Consensus 9 ~~~~~~~~~~~~y~~ak~~-~~~d~~~Al~~f~~ii~~~~e~~~~~~kal~~l~~l~~--~~g~~~~~l~~~~~~l~~~ 84 (288)
..|..++-+.+..-.|+.+ ...|+.+|.+.|..+...-++..+ +..+..|+..|. ..-++.+|.++++.++...
T Consensus 123 ~~~p~~~~~~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~--~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~ 199 (379)
T PF09670_consen 123 LENPYEVFGDREWRRAKELFNRYDYGAAARILEELLRRLPGREE--YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRD 199 (379)
T ss_pred cCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhh--HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 3445555556666666665 578999999999999875112122 688888888776 6778999999999887765
No 296
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=35.05 E-value=1.3e+02 Score=22.26 Aligned_cols=20 Identities=20% Similarity=0.433 Sum_probs=17.5
Q ss_pred HHcCCHHHHHHHHHHHHHHH
Q 023037 65 YRLGKYKEMMDAYREMLTYI 84 (288)
Q Consensus 65 ~~~g~~~~~l~~~~~~l~~~ 84 (288)
-..|+|++++++|.+.+.++
T Consensus 17 d~~~~y~eA~~~Y~~~i~~~ 36 (75)
T cd02677 17 EEEGDYEAAFEFYRAGVDLL 36 (75)
T ss_pred HHHhhHHHHHHHHHHHHHHH
Confidence 34499999999999999988
No 297
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=35.04 E-value=92 Score=21.95 Aligned_cols=31 Identities=26% Similarity=0.352 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 023037 54 FKALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (288)
Q Consensus 54 ~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~ 84 (288)
|.--.|++.-|.+.|++++|.+|+.++..-+
T Consensus 23 ~~NhLqvI~gllqlg~~~~a~eYi~~~~~~~ 53 (62)
T PF14689_consen 23 FLNHLQVIYGLLQLGKYEEAKEYIKELSKDL 53 (62)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 3444577888899999999999999988776
No 298
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=34.64 E-value=3.1e+02 Score=27.24 Aligned_cols=96 Identities=13% Similarity=0.196 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHHHHhh--h
Q 023037 54 FKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAK--N 131 (288)
Q Consensus 54 ~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~~~~~~~~~~~~~~~~~~~~l~~i~~a~--n 131 (288)
-.++..++..|...|+.+.|+..|.+.++|. .. .+.-+-=++|-|.-.+- - .|+.-+..+...+....+... +
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYC-Ts-~khvInm~ln~i~VSI~--~-~nw~hv~sy~~~A~st~~~~~~~~ 224 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDYC-TS-AKHVINMCLNLILVSIY--M-GNWGHVLSYISKAESTPDANENLA 224 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhhh-cc-hHHHHHHHHHHHHHHHh--h-cchhhhhhHHHHHHhCchhhhhHH
Confidence 4788899999999999999999999999999 32 23333333333321111 1 345455555555544432111 1
Q ss_pred hhhhHHhhhhHHHHHhhhcchhH
Q 023037 132 ERLWFKTNLKLCKIWFDMGEYGR 154 (288)
Q Consensus 132 er~~f~~~~kL~~lyl~~~~y~~ 154 (288)
.-..+++.+--|-..+..++|..
T Consensus 225 q~v~~kl~C~agLa~L~lkkyk~ 247 (466)
T KOG0686|consen 225 QEVPAKLKCAAGLANLLLKKYKS 247 (466)
T ss_pred HhcCcchHHHHHHHHHHHHHHHH
Confidence 22233444433333444445555
No 299
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=34.16 E-value=5.6e+02 Score=29.05 Aligned_cols=112 Identities=12% Similarity=0.041 Sum_probs=77.8
Q ss_pred hhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCC-
Q 023037 139 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH- 217 (288)
Q Consensus 139 ~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE~~~y~~~~n~~kak~~y~~A~~~a~~I~~- 217 (288)
+.+++...+..++-..+...+..++++..-..+.|-. -..-+...-.++++....+..|...+..|...+..+--
T Consensus 1018 y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP----~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~ 1093 (1236)
T KOG1839|consen 1018 YGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHP----PTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGP 1093 (1236)
T ss_pred hhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCC----chhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCc
Confidence 3455555566666666666666666664433332221 11222233345578888899999999999997766554
Q ss_pred -hhHHHHHHhhcchhhhhhccHHHHHHHHHHHHhhhhh
Q 023037 218 -PRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDE 254 (288)
Q Consensus 218 -p~i~a~I~~~~G~l~~~ekdy~~A~syF~EaF~~y~e 254 (288)
+.=.|......+.++...+|++.|...=-+++..|.+
T Consensus 1094 ~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~iy~~ 1131 (1236)
T KOG1839|consen 1094 KELETALSYHALARLFESMKDFRNALEHEKVTYGIYKE 1131 (1236)
T ss_pred cchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHH
Confidence 4556788888999999999999999999999999986
No 300
>TIGR01716 RGG_Cterm transcriptional activator, Rgg/GadR/MutR family, C-terminal domain. This model describes the whole, except for a 60 residue N-terminal helix-turn-helix DNA-binding domain (PFAM pfam01381) of the family of proteins related to the transcriptional regulator Rgg, also called RopB. Rgg is required for secretion of several proteins, including a cysteine proteinase associated with virulence. GadR is a positive regulator of a glutamate-dependent acid resistance mechanism. MutR is a transcriptional activator for mutacin biosynthesis genes in Streptococcus mutans. This family appears restricted to the low-GC Gram-positive bacteria, including at least eight members in Lactococcus lactis.
Probab=34.14 E-value=3e+02 Score=23.59 Aligned_cols=189 Identities=10% Similarity=0.007 Sum_probs=97.2
Q ss_pred HHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHHHHhhhhhhhHHhhhhHHH
Q 023037 65 YRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCK 144 (288)
Q Consensus 65 ~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~~~~~~~~~~~~~~~~~~~~l~~i~~a~ner~~f~~~~kL~~ 144 (288)
...+|.+++.+++++... - ....--.-..++..++..+......+.+......+-..+.=.|.. -++.|-.
T Consensus 22 ~~~~Di~~L~~l~~~~~~-~-~~~~~~~~~~li~~~l~~l~~~~~~~~~~~~~l~~yL~~i~~W~~-------~eL~Lf~ 92 (220)
T TIGR01716 22 FYSNDIVGLKSLLSKISE-T-KETYNRLNKAVIKARLHTLDHSYILSEEEVEFLTDYLFNIEEWTY-------YELYLFG 92 (220)
T ss_pred HHhcCHHHHHHHHHHhhc-c-hhHHHHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHhhhhhhhhH-------HHHHHHH
Confidence 344666776666665110 0 011111122345555554443322222223333333333333543 3344433
Q ss_pred HHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhHHHHH
Q 023037 145 IWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGII 224 (288)
Q Consensus 145 lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE~~~y~~~~n~~kak~~y~~A~~~a~~I~~p~i~a~I 224 (288)
--+..=+.+.+..+++++.+....-. +.......+.-+...=.-++...+++..|+.++....++...-..-...-.+
T Consensus 93 n~~~~l~~~~~~~l~~~il~~~~~~~--~~~~~~~~i~~il~N~~~~~i~~~~~~~a~~~l~~l~~l~~~~~~~~~ki~~ 170 (220)
T TIGR01716 93 NTMSILNSEDLEFLGKELLERLKRYR--ELNRYRRRVIQLLLNIAVLLIEKNEFSYAQYFLEKLEKILDPEDDLYERILF 170 (220)
T ss_pred hHHHHcCHHHHHHHHHHHHHhhhHHH--hHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhchhhhHHHHHHH
Confidence 33333344444455555533322111 1111114455666666666777788999999999987777432222334445
Q ss_pred HhhcchhhhhhccHHHHHHHHHHHHhhhhhhCChhHHHHh
Q 023037 225 RECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCL 264 (288)
Q Consensus 225 ~~~~G~l~~~ekdy~~A~syF~EaF~~y~e~g~~~a~~~L 264 (288)
...-|.+.+..|+-+.+....-++.+.+...|.+.-...+
T Consensus 171 ~f~~~l~~y~~g~~~~~~~~i~~~i~~l~~lg~~~~~~~~ 210 (220)
T TIGR01716 171 NFLKGIILYKEGQKESGEEKIEQAIEIFDELGYPTLAAYY 210 (220)
T ss_pred HHHHHHHHHHcCCCcccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 5666777777777667777777888888888877655443
No 301
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=33.58 E-value=1.7e+02 Score=21.01 Aligned_cols=26 Identities=27% Similarity=0.517 Sum_probs=21.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHH
Q 023037 59 QTVKLYYRLGKYKEMMDAYREMLTYI 84 (288)
Q Consensus 59 ~l~~l~~~~g~~~~~l~~~~~~l~~~ 84 (288)
.-+.-.-..|++++++++|.+.+..+
T Consensus 11 ~~Av~~D~~g~~~~Al~~Y~~a~e~l 36 (75)
T cd02656 11 KQAVKEDEDGNYEEALELYKEALDYL 36 (75)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 34445556799999999999999988
No 302
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=33.58 E-value=5.5e+02 Score=26.45 Aligned_cols=146 Identities=13% Similarity=0.142 Sum_probs=70.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhccCCC--cchhhHHHHHHHHHHHHHHhhh-----
Q 023037 59 QTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSAS--QNFSLLREFYQTTLKALEEAKN----- 131 (288)
Q Consensus 59 ~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~~~~~~~--~~~~~~~~~~~~~l~~i~~a~n----- 131 (288)
+|..-+.+..+.+++.+.....+..+...-...-+...|...+..+..+.+ ...+.+...++-+...++.+..
T Consensus 209 ~L~~e~~rLsn~ekl~~~~~~a~~~L~ge~~~~~~~~~l~~a~~~l~~~~~~d~~l~~~~~~l~ea~~~l~ea~~el~~~ 288 (557)
T COG0497 209 ELEEERKRLSNSEKLAEAIQNALELLSGEDDTVSALSLLGRALEALEDLSEYDGKLSELAELLEEALYELEEASEELRAY 288 (557)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555666666666666666662111111223333333333332211 1233334444444444444332
Q ss_pred -------hhhhHHhhhhHHHHHhhhcchhH-H---HHHHHHHHHhccCCCCCccccccchHHHHHHHHHHHHHhhcCHHH
Q 023037 132 -------ERLWFKTNLKLCKIWFDMGEYGR-M---SKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKK 200 (288)
Q Consensus 132 -------er~~f~~~~kL~~lyl~~~~y~~-~---~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE~~~y~~~~n~~k 200 (288)
..+.-.++-||..+.--.++|.. + .....+++.-+...++.++ .+..+|.++-.....+-+
T Consensus 289 ~~~le~Dp~~L~~ve~Rl~~L~~l~RKY~~~~~~l~~~~~~~~~el~~L~~~~~--------~~~~Le~~~~~l~~~~~~ 360 (557)
T COG0497 289 LDELEFDPNRLEEVEERLFALKSLARKYGVTIEDLLEYLDKIKEELAQLDNSEE--------SLEALEKEVKKLKAELLE 360 (557)
T ss_pred HhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhhhh--------HHHHHHHHHHHHHHHHHH
Confidence 23444889999999999999987 3 3333344333333332222 234444444444444555
Q ss_pred HHHHHHHHHhhh
Q 023037 201 LKQLYQKALAIK 212 (288)
Q Consensus 201 ak~~y~~A~~~a 212 (288)
+-+.+++.|..+
T Consensus 361 ~A~~Ls~~R~~~ 372 (557)
T COG0497 361 AAEALSAIRKKA 372 (557)
T ss_pred HHHHHHHHHHHH
Confidence 555555555433
No 303
>PF03635 Vps35: Vacuolar protein sorting-associated protein 35 ; InterPro: IPR005378 The movement of lipid and protein components between intracellular organelles requires the regulated interactions of many molecules. Vacuolar protein sorting-associated protein (Vps)5 is a yeast protein that is a subunit of a large multimeric complex, termed the retromer complex, involved in retrograde transport of proteins from endosomes to the trans-Golgi network. Sorting nexin (SNX) 1 and SNX2 are its mammalian orthologs []. To carry out its biological functions, Vps5 forms the retromer complex with at least four other proteins: Vps17, Vps26, Vps29, and Vps35.Vps35 contains a central region of weaker sequence similarity, thought to indicate the presence of at least three domains [].; PDB: 2R17_C.
Probab=32.85 E-value=4.7e+02 Score=27.99 Aligned_cols=186 Identities=13% Similarity=0.147 Sum_probs=68.5
Q ss_pred HHHHHHHHHHhh-hhhhhHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHHHHhhhh----------hhhH----Hhhh
Q 023037 76 AYREMLTYIKSA-VTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE----------RLWF----KTNL 140 (288)
Q Consensus 76 ~~~~~l~~~~~~-v~ka~~~k~i~~ild~~~~~~~~~~~~~~~~~~~~l~~i~~a~ne----------r~~f----~~~~ 140 (288)
.|..++.++ +. .-|.-+-.++.++++.=..+ .+.+.++.+++.+.-.++...+. ---| ..-.
T Consensus 417 ~y~~Ll~~L-~~~~rk~IA~~Ii~~iL~~~~~I--st~e~v~~ll~li~pLi~d~~d~~~~~~~~~~~~eef~eeQ~~va 493 (762)
T PF03635_consen 417 NYPPLLSLL-PYETRKQIALEIIDNILENNTII--STPEEVDNLLELISPLIKDQDDQPSSEPDLKEDSEEFAEEQELVA 493 (762)
T ss_dssp -----------------------------------------------------------------------TCCCHHHHH
T ss_pred cHHHHHHhC-ChHHHHHHHHHHHHHHHhCCCcc--CCHHHHHHHHHHHHHHhhCCCCCCCccccccCchHHHHHHHHHHH
Confidence 455555555 32 23444455555555432222 23557777777777777643322 1112 2234
Q ss_pred hHHHHHhhhcchhHHHHHHHHHHHhccCCCCCcccccc---chHHHHHHHHHHHHHhhc-------------C-HHHHHH
Q 023037 141 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKG---SQLLEVYAIEIQMYTETK-------------N-NKKLKQ 203 (288)
Q Consensus 141 kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~---~~llEv~~lE~~~y~~~~-------------n-~~kak~ 203 (288)
|++.+. ...+.+.--+++..+++...+.+ ....+- +++...+.+--+ +...+ + -.+.+.
T Consensus 494 rliHLi-~~~D~d~~~~iL~~~rk~~~~Gg--~~ri~~TlP~LIf~~lkL~r~-~~~~~~~~~~~~~~~~~~~~~~~~~k 569 (762)
T PF03635_consen 494 RLIHLI-RSDDPDQQFEILNIARKHFGNGG--PKRIRYTLPPLIFAALKLARR-IKDLKQKYPNNAIKDDDEDWEKKCKK 569 (762)
T ss_dssp HHHHHC-TTSSHHHHHHHHHHHHHHHCTT---SSSHHHHCHHHHHHHHHHHHH-HHCCC---------CT-TTHHHHHHH
T ss_pred HHHHHh-cCCCHHHHHHHHHHHHHHHHhCC--CceeeeeHHHHHHHHHHHHHH-HHHhhccchhhccccchhhHHHHHHH
Confidence 556653 46677777888888888877642 122222 222333333233 33222 1 223444
Q ss_pred HHHHHHhhhcc---CC-ChhHHHHHHhhcchhhhhhccHHHHHHHHHHHHhhhhh--hCChhHHHHhHHHH
Q 023037 204 LYQKALAIKSA---IP-HPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDE--AGNQRRIQCLKYLV 268 (288)
Q Consensus 204 ~y~~A~~~a~~---I~-~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EaF~~y~e--~g~~~a~~~LKY~~ 268 (288)
.+.-...+-+. +. +|.+-=.+-+++|.+--.-+-=+-||..|-+||.-|.| +++....++|.+|+
T Consensus 570 ifkfi~~~i~~L~~~~~~~~lalkL~Lq~A~~AD~~~~e~iaYEFf~QAf~iYEE~IsDSk~Q~~aL~~ii 640 (762)
T PF03635_consen 570 IFKFIHQCISALYQIHPSSELALKLYLQAAIVADQCGLEEIAYEFFSQAFTIYEEEISDSKAQFQALTLII 640 (762)
T ss_dssp HHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHH--SHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCchhhhHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Confidence 44433333332 22 24555555555655544333224699999999999997 45568889988875
No 304
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=32.29 E-value=1.8e+02 Score=21.35 Aligned_cols=23 Identities=17% Similarity=0.210 Sum_probs=19.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHH
Q 023037 62 KLYYRLGKYKEMMDAYREMLTYI 84 (288)
Q Consensus 62 ~l~~~~g~~~~~l~~~~~~l~~~ 84 (288)
.-.-..|++++|+.+|.+.+.+|
T Consensus 14 v~~D~~g~y~eA~~lY~~ale~~ 36 (75)
T cd02684 14 VKKDQRGDAAAALSLYCSALQYF 36 (75)
T ss_pred HHHHHhccHHHHHHHHHHHHHHH
Confidence 33446689999999999999998
No 305
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.25 E-value=6.4e+02 Score=26.79 Aligned_cols=33 Identities=24% Similarity=0.259 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 023037 52 WGFKALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (288)
Q Consensus 52 ~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~ 84 (288)
|.-.-|-+-+.-+++..+|..+++.|..++.+.
T Consensus 352 ~iH~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i 384 (872)
T KOG4814|consen 352 CIHTLLWNTAKKLFKMEKYVVSIRFYKLSLKDI 384 (872)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444444555566666677777777666666665
No 306
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=32.17 E-value=2.1e+02 Score=21.24 Aligned_cols=33 Identities=9% Similarity=0.233 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhh
Q 023037 55 KALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAV 88 (288)
Q Consensus 55 kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v 88 (288)
..+-.-+.-+-+.|++++++.+|++....+ ..+
T Consensus 7 ~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L-~q~ 39 (75)
T cd02682 7 RKYAINAVKAEKEGNAEDAITNYKKAIEVL-SQI 39 (75)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHH-HHH
Confidence 344455566778899999999999988888 443
No 307
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=32.13 E-value=3.3e+02 Score=24.77 Aligned_cols=90 Identities=16% Similarity=0.214 Sum_probs=62.9
Q ss_pred HHHHHHHHHhccCCCCCccccccchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhHHHHHHhhcchhhhhh
Q 023037 156 SKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAE 235 (288)
Q Consensus 156 ~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE~~~y~~~~n~~kak~~y~~A~~~a~~I~~p~i~a~I~~~~G~l~~~e 235 (288)
..|..++-+.... +.+.+..--+.-.-.|+.=.+.-++|.+|..-|+.|+.+--+.+. ..+.++..-.|-..+..
T Consensus 73 EeLmae~E~i~~d----eek~k~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~-e~rsIly~Nraaa~iKl 147 (271)
T KOG4234|consen 73 EELMAEIEKIFSD----EEKDKAIEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTST-EERSILYSNRAAALIKL 147 (271)
T ss_pred HHHHHHHHHhcCc----HHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccH-HHHHHHHhhhHHHHHHh
Confidence 3455566666432 122222223566777888899999999999999999877554443 77788888888888888
Q ss_pred ccHHHHHHHHHHHHh
Q 023037 236 RQWADAATDFFEAFK 250 (288)
Q Consensus 236 kdy~~A~syF~EaF~ 250 (288)
+.|+.|..+...|.+
T Consensus 148 ~k~e~aI~dcsKaie 162 (271)
T KOG4234|consen 148 RKWESAIEDCSKAIE 162 (271)
T ss_pred hhHHHHHHHHHhhHh
Confidence 888888776655544
No 308
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=31.97 E-value=1.5e+02 Score=24.64 Aligned_cols=72 Identities=13% Similarity=0.231 Sum_probs=48.7
Q ss_pred ccCCCCHHHHHHHHHHhhcCCc-----------cchhhHHHHHHHHHHHHHHcCCHHHHHHHHH----HHHHHHHhhhhh
Q 023037 26 GLVETDPEGALAGFAEVVAMEP-----------EKAEWGFKALKQTVKLYYRLGKYKEMMDAYR----EMLTYIKSAVTR 90 (288)
Q Consensus 26 ~~~~~d~~~Al~~f~~ii~~~~-----------e~~~~~~kal~~l~~l~~~~g~~~~~l~~~~----~~l~~~~~~v~k 90 (288)
+++.+||-.|+-.|+..+...+ |..-..--+.-+|+..++.+|+.+=-+.|++ ++++++ |.-++
T Consensus 11 a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltLi-PQCp~ 89 (140)
T PF10952_consen 11 AFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTLI-PQCPN 89 (140)
T ss_pred HhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHhc-cCCCC
Confidence 4577888888888887775421 1222335677889999999999999998887 455555 55555
Q ss_pred hhHHHHHH
Q 023037 91 NYSEKCIN 98 (288)
Q Consensus 91 a~~~k~i~ 98 (288)
..-+..|+
T Consensus 90 ~~C~afi~ 97 (140)
T PF10952_consen 90 TECEAFID 97 (140)
T ss_pred cchHHHHH
Confidence 55554443
No 309
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=31.61 E-value=4.2e+02 Score=25.69 Aligned_cols=72 Identities=18% Similarity=0.176 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHHHH
Q 023037 53 GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEE 128 (288)
Q Consensus 53 ~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~~~~~~~~~~~~~~~~~~~~l~~i~~ 128 (288)
.-.++++.++-.+..|+|.++.+++-..+.++ +.-.+|+..-.-.++-.-+.. .+++..-+-+...++.|+.
T Consensus 128 ~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~-~~~d~n~lsalwGKlASEIL~---qnWd~A~edL~rLre~IDs 199 (432)
T KOG2758|consen 128 RIETLYKYAKFQYECGNYSGASDYLYFYRALV-SDPDRNYLSALWGKLASEILT---QNWDGALEDLTRLREYIDS 199 (432)
T ss_pred HHHHHHHHHHHHHhccCcccHHHHHHHHHHhc-CCcchhhHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHcc
Confidence 56789999999999999999999999999999 777787766655553332221 2344444444555566654
No 310
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=31.54 E-value=3.1e+02 Score=25.44 Aligned_cols=107 Identities=16% Similarity=0.179 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHHHHhhhhh
Q 023037 54 FKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNER 133 (288)
Q Consensus 54 ~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~~~~~~~~~~~~~~~~~~~~l~~i~~a~ner 133 (288)
+.=++.=|+-|+.-.+|+.++..|.+-+... |.+..=++-+++.. +- .. ..+..-.-|+..++-. -
T Consensus 10 a~qlkE~gnk~f~~k~y~~ai~~y~raI~~n-P~~~~Y~tnralch----lk-~~-----~~~~v~~dcrralql~---~ 75 (284)
T KOG4642|consen 10 AEQLKEQGNKCFIPKRYDDAIDCYSRAICIN-PTVASYYTNRALCH----LK-LK-----HWEPVEEDCRRALQLD---P 75 (284)
T ss_pred HHHHHhccccccchhhhchHHHHHHHHHhcC-CCcchhhhhHHHHH----HH-hh-----hhhhhhhhHHHHHhcC---h
Confidence 3334455666777788888888888887777 77665555555543 10 00 1122222233333322 2
Q ss_pred hhHHhhhhHHHHHhhhcchhHHHHHHHHHHHh--ccCCCCCcc
Q 023037 134 LWFKTNLKLCKIWFDMGEYGRMSKILKELHKS--CQREDGTDD 174 (288)
Q Consensus 134 ~~f~~~~kL~~lyl~~~~y~~~~~ll~elkk~--~~~~~~~dD 174 (288)
...+-..-|+.-.++.+.|+++...|++...+ ++..+.++|
T Consensus 76 N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~~~~~~~d 118 (284)
T KOG4642|consen 76 NLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQPFTFGDD 118 (284)
T ss_pred HHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcCCCCCcch
Confidence 23456677888889999999998888888554 333333343
No 311
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=31.44 E-value=81 Score=23.46 Aligned_cols=19 Identities=21% Similarity=0.399 Sum_probs=16.9
Q ss_pred HcCCHHHHHHHHHHHHHHH
Q 023037 66 RLGKYKEMMDAYREMLTYI 84 (288)
Q Consensus 66 ~~g~~~~~l~~~~~~l~~~ 84 (288)
..|+|++|+++|.+.+.++
T Consensus 18 ~~gny~eA~~lY~~ale~~ 36 (75)
T cd02680 18 EKGNAEEAIELYTEAVELC 36 (75)
T ss_pred HhhhHHHHHHHHHHHHHHH
Confidence 3588999999999999998
No 312
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=31.25 E-value=5.3e+02 Score=25.54 Aligned_cols=173 Identities=17% Similarity=0.236 Sum_probs=101.4
Q ss_pred CCCHHHHHHHHHHhhcCCccchhhHHHHHHH-HHHHHHHcCCHHHHHH-HHHHHHHHHHhh-------------------
Q 023037 29 ETDPEGALAGFAEVVAMEPEKAEWGFKALKQ-TVKLYYRLGKYKEMMD-AYREMLTYIKSA------------------- 87 (288)
Q Consensus 29 ~~d~~~Al~~f~~ii~~~~e~~~~~~kal~~-l~~l~~~~g~~~~~l~-~~~~~l~~~~~~------------------- 87 (288)
..|...-.+.+..|++.=-+..+| ..|.. +..+..+.|+...+.. .++++.++....
T Consensus 45 ~~D~~s~~kv~~~i~~lc~~~~~w--~~Lne~i~~Lskkrgqlk~ai~~Mvq~~~~y~~~~~d~~~k~~li~tLr~Vteg 122 (439)
T KOG1498|consen 45 ASDMASNTKVLEEIMKLCFSAKDW--DLLNEQIRLLSKKRGQLKQAIQSMVQQAMTYIDGTPDLETKIKLIETLRTVTEG 122 (439)
T ss_pred HhhHHHHHHHHHHHHHHHhccccH--HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHhhcC
Confidence 456677777888887764355666 55555 4456667788777765 455666665221
Q ss_pred -----hhhhhHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHHHHh-hhhhhhHHhhhhHHHHHhhhcchhHHHHHHHH
Q 023037 88 -----VTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEA-KNERLWFKTNLKLCKIWFDMGEYGRMSKILKE 161 (288)
Q Consensus 88 -----v~ka~~~k~i~~ild~~~~~~~~~~~~~~~~~~~~l~~i~~a-~ner~~f~~~~kL~~lyl~~~~y~~~~~ll~e 161 (288)
+.|++..+.+..+.+.-|.+.+ ..+...++-.+..-.- ..++.-| -+-..++-+.+++|-.|.-+-++
T Consensus 123 kIyvEvERarlTk~L~~ike~~Gdi~~----Aa~il~el~VETygsm~~~ekV~f--iLEQmrKOG~~~D~vra~i~skK 196 (439)
T KOG1498|consen 123 KIYVEVERARLTKMLAKIKEEQGDIAE----AADILCELQVETYGSMEKSEKVAF--ILEQMRLCLLRLDYVRAQIISKK 196 (439)
T ss_pred ceEEeehHHHHHHHHHHHHHHcCCHHH----HHHHHHhcchhhhhhhHHHHHHHH--HHHHHHHHHHhhhHHHHHHHHHH
Confidence 1244455555444444443322 2222222222221111 1223333 23345566789999999988888
Q ss_pred HHHhccCCCCCccccccchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhcc
Q 023037 162 LHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSA 214 (288)
Q Consensus 162 lkk~~~~~~~~dDk~~~~~llEv~~lE~~~y~~~~n~~kak~~y~~A~~~a~~ 214 (288)
+.+..=+.+ |-. .+-+.-|-+-++++.+.+.|=-.-+.|+..-...+-
T Consensus 197 I~~K~F~~~--~~~---~lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~v 244 (439)
T KOG1498|consen 197 INKKFFEKP--DVQ---ELKLKYYELMIRLGLHDRAYLNVCRSYRAIYDTGNV 244 (439)
T ss_pred hhHHhcCCc--cHH---HHHHHHHHHHHHhcccccchhhHHHHHHHHhccccc
Confidence 876644432 222 455888999999998888888888888776554443
No 313
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=30.72 E-value=53 Score=23.36 Aligned_cols=27 Identities=15% Similarity=0.074 Sum_probs=22.0
Q ss_pred hhHHHHHHhhcchhhhhhccHHHHHHH
Q 023037 218 PRIMGIIRECGGKMHMAERQWADAATD 244 (288)
Q Consensus 218 p~i~a~I~~~~G~l~~~ekdy~~A~sy 244 (288)
.-+||.|..+.|..|...++.+-|..-
T Consensus 35 ~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 35 DFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 357888889999999998988888654
No 314
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=30.62 E-value=2.5e+02 Score=23.60 Aligned_cols=113 Identities=9% Similarity=0.087 Sum_probs=74.6
Q ss_pred hhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCC----------------------------ccccccchHHHHHHHHHH
Q 023037 139 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGT----------------------------DDQKKGSQLLEVYAIEIQ 190 (288)
Q Consensus 139 ~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~----------------------------dDk~~~~~llEv~~lE~~ 190 (288)
.+..+..-++.|+.++|.++|.+....++..... |+. -...-.+-+.-+.+
T Consensus 5 ~i~~Ar~aL~~g~~~~A~~~L~~A~~~l~~~~~~~p~~~~~~~~~~~~~~~~iPI~~~~~v~d~~-~~~~~~~~ai~~a~ 83 (155)
T PF10938_consen 5 DIQKARLALFQGDTDEAKKLLEDAQGKLDAARADDPKLAKAEKILPPAKDDLIPIDAEVIVIDDY-VPTPEKKAAIKTAN 83 (155)
T ss_dssp HHHHHHHHHCTT-HHHHHHHHHHHHHHHTS-HHHHHCCB-TT-S--SSSS-EEEEEEEEEEE-------HHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHhcChHhHhhhhccccCCCceEEEeeEEEEeecc-CChHHHHHHHHHHH
Confidence 4678889999999999999999998886533210 110 00222344555566
Q ss_pred HHHhhcCHHHHHHHHHHHHhh-hccCCC-hhHHHHHHhhcchhhhhhccHHHHHHHHHHHHhhh
Q 023037 191 MYTETKNNKKLKQLYQKALAI-KSAIPH-PRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 252 (288)
Q Consensus 191 ~y~~~~n~~kak~~y~~A~~~-a~~I~~-p~i~a~I~~~~G~l~~~ekdy~~A~syF~EaF~~y 252 (288)
-...-|+.+.|++.+.-+..- .-.+.. |.-+-.-..-...-.+.+|+|..|-.-+-.++++.
T Consensus 84 ~~l~~g~~~~A~~~L~~~~~ei~~~~~~lPL~~~~~av~~A~~ll~~~k~~eA~~aL~~A~~~l 147 (155)
T PF10938_consen 84 ELLKKGDKQAAREILKLAGSEIDITTALLPLAQTPAAVKQAAALLDEGKYYEANAALKQALDGL 147 (155)
T ss_dssp HHHHTT-HHHHHHHHHHTT-EEEEEEEEEEHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHT-
T ss_pred HHHhCCCHHHHHHHHHHhcccceeeeeeCCHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHhcCe
Confidence 667778999999999887533 234444 77666666667777889999999999888887653
No 315
>cd07353 harmonin_N N-terminal protein-binding module of harmonin. Harmonin is a postsynaptic density-95/discs-large/ZO-1 (PDZ) domain-containing scaffold protein, which organizes the Usher protein network of the inner ear and the retina. Harmonin contains a single copy of this domain, which is found at the N-terminus of all three harmonin isoform classes (a, b and c), and which preceeds the first PDZ protein-binding domain, PDZ1. This harmonin_N domain binds specifically to a short internal peptide fragment of the cadherin 23 cytoplasmic domain; cadherin 23 is a component of the Usher protein network.
Probab=30.25 E-value=69 Score=23.69 Aligned_cols=29 Identities=14% Similarity=0.274 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHhhhhhhCC-hhHHHHhHHH
Q 023037 239 ADAATDFFEAFKNYDEAGN-QRRIQCLKYL 267 (288)
Q Consensus 239 ~~A~syF~EaF~~y~e~g~-~~a~~~LKY~ 267 (288)
+.-.+|||.+++-|++++| |.-+.-||-.
T Consensus 19 EaEkd~lY~~Lr~YHqSm~lp~li~Dlk~V 48 (79)
T cd07353 19 EAEKDYLYDVLRMYHQSMNLPVLVGDLKLV 48 (79)
T ss_pred HHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 3446799999999999998 6766666644
No 316
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=30.01 E-value=5.1e+02 Score=24.97 Aligned_cols=118 Identities=22% Similarity=0.278 Sum_probs=72.2
Q ss_pred hhhhhH-HhhhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHHHHHHHh--hcCHHHHHHHHHH
Q 023037 131 NERLWF-KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTE--TKNNKKLKQLYQK 207 (288)
Q Consensus 131 ner~~f-~~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE~~~y~~--~~n~~kak~~y~~ 207 (288)
|...+| ..+.+.+.-.+..++|..|..++.++..-++ ++. . ++.+..-++.|.. .-++.+|...+..
T Consensus 125 ~p~~~~~~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~-----~~~---~--~~~~~~l~~~y~~WD~fd~~~A~~~l~~ 194 (379)
T PF09670_consen 125 NPYEVFGDREWRRAKELFNRYDYGAAARILEELLRRLP-----GRE---E--YQRYKDLCEGYDAWDRFDHKEALEYLEK 194 (379)
T ss_pred CHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-----chh---h--HHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 444455 7888999999999999999999999987511 222 2 4555555666644 4579999999888
Q ss_pred HHhhhccCCChhHHHHHHhhcchhhhhhccHHHHHHHHHHHHhhhhhhCC--hhHHHHhHHHHHHHHhcC
Q 023037 208 ALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGN--QRRIQCLKYLVLANMLME 275 (288)
Q Consensus 208 A~~~a~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EaF~~y~e~g~--~~a~~~LKY~~L~~il~~ 275 (288)
....... .-.++++-.+.....++++++....+ ..+..-+-|.+|..++.|
T Consensus 195 ~~~~~~~-----------------l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~dLl~N 247 (379)
T PF09670_consen 195 LLKRDKA-----------------LNQEREGLKELVEVLKALESILSALEDKKQRQKKLYYALLADLLAN 247 (379)
T ss_pred HHHHhhh-----------------hHhHHHHHHHHHHHHHHHHhhccchhhhhccccccHHHHHHHHHHH
Confidence 7655333 12334444455555555555554322 122222345555555543
No 317
>PF06244 DUF1014: Protein of unknown function (DUF1014); InterPro: IPR010422 This family consists of several hypothetical eukaryotic proteins of unknown function.
Probab=29.87 E-value=70 Score=26.14 Aligned_cols=71 Identities=23% Similarity=0.154 Sum_probs=41.7
Q ss_pred HHhhhccCCChhHHHHHHhhcchhhhhhccHHHHHHHHHHHHhhhhhhCCh-hHHHHhHHHHHHHHhcCCCCCCCCCC
Q 023037 208 ALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQ-RRIQCLKYLVLANMLMESEVNPFDGQ 284 (288)
Q Consensus 208 A~~~a~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EaF~~y~e~g~~-~a~~~LKY~~L~~il~~~~~dpF~s~ 284 (288)
|++|.++|....+-+. |.=-.=++..+.||..|-|--=-=-...+| -+++-+|=| |-+.-..||.|||..+
T Consensus 51 A~~Id~Al~aLs~~~~-----~~drHPErR~KAAy~afeE~~Lp~lK~E~PgLrlsQ~kq~-l~K~w~KSPeNP~NQ~ 122 (122)
T PF06244_consen 51 ASGIDDALDALSLTDK-----PIDRHPERRMKAAYKAFEERRLPELKEENPGLRLSQYKQM-LWKEWQKSPENPFNQR 122 (122)
T ss_pred hccHHHHHHHcccCCC-----CCCCCcchhHHHHHHHHHHHHhHHHHhhCCCchHHHHHHH-HHHHHhcCCCCCccCC
Confidence 6777776655333332 222234788899988887642111112333 444555544 4677789999999864
No 318
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=29.58 E-value=1.6e+02 Score=21.82 Aligned_cols=31 Identities=16% Similarity=0.201 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 023037 54 FKALKQTVKLYYRLGKYKEMMDAYREMLTYI 84 (288)
Q Consensus 54 ~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~ 84 (288)
...+-..+.-.-+.|+|++|+.+|++.+.++
T Consensus 6 Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l 36 (76)
T cd02681 6 AVQFARLAVQRDQEGRYSEAVFYYKEAAQLL 36 (76)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 3444555566678899999999999999988
No 319
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=29.03 E-value=3.4e+02 Score=22.57 Aligned_cols=105 Identities=18% Similarity=0.241 Sum_probs=72.5
Q ss_pred hcccCCCCHHHHHHHHHHhhcCC----c-c-chhhHHHHHHH--HHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHH
Q 023037 24 EKGLVETDPEGALAGFAEVVAME----P-E-KAEWGFKALKQ--TVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEK 95 (288)
Q Consensus 24 ak~~~~~d~~~Al~~f~~ii~~~----~-e-~~~~~~kal~~--l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k 95 (288)
-+.+.++-+++|-..+.+.++.. + + -+.-+|.|+-+ |...+...|+|++.+.--...|.||+.-
T Consensus 17 e~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRR-------- 88 (144)
T PF12968_consen 17 ERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRR-------- 88 (144)
T ss_dssp HHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--------
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhc--------
Confidence 45567888888988888888642 1 2 24446777666 6789999999999999999999999221
Q ss_pred HHHHHHHHhccCCCcchhhHHHHHHHHHHHHHHhhhhhhhHHhhhhHHHHHhhhcchhHHHHHHHHHHHh
Q 023037 96 CINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKS 165 (288)
Q Consensus 96 ~i~~ild~~~~~~~~~~~~~~~~~~~~l~~i~~a~ner~~f~~~~kL~~lyl~~~~y~~~~~ll~elkk~ 165 (288)
+..+. ..-++|...-.+.+..+-..|..+++..-++..-..
T Consensus 89 ---------GEL~q--------------------deGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 89 ---------GELHQ--------------------DEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp -----------TTS--------------------THHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred ---------ccccc--------------------ccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 22211 034889988899999999999999876666555444
No 320
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=28.61 E-value=1.6e+02 Score=18.54 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHH
Q 023037 56 ALKQTVKLYYRLGKYKEMMDAYR 78 (288)
Q Consensus 56 al~~l~~l~~~~g~~~~~l~~~~ 78 (288)
.+..++-.+..+|++++|.++++
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~ 25 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQ 25 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHH
Confidence 45677889999999999999954
No 321
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=28.18 E-value=1.3e+02 Score=24.51 Aligned_cols=38 Identities=16% Similarity=0.337 Sum_probs=31.4
Q ss_pred hhhhHHhhhhHHHHHhhhcchhHHHHHHHHHHHhccCC
Q 023037 132 ERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQRE 169 (288)
Q Consensus 132 er~~f~~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~ 169 (288)
.-..|--++.+|..++..|++.++-.-+-...++|.+|
T Consensus 59 ~e~~Fl~qV~lGE~L~~~G~~~~aa~hf~nAl~V~~qP 96 (121)
T PF02064_consen 59 MERFFLQQVQLGEQLLAQGDYEEAAEHFYNALKVCPQP 96 (121)
T ss_dssp HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTSSSH
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCH
Confidence 35677889999999999999999887777888888876
No 322
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=27.96 E-value=3.4e+02 Score=24.78 Aligned_cols=79 Identities=15% Similarity=0.262 Sum_probs=50.2
Q ss_pred HHHHHHHHhhhh-hhhHHhhhhHHHHHhh-hcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHHHHHHHhhcCH
Q 023037 121 TTLKALEEAKNE-RLWFKTNLKLCKIWFD-MGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNN 198 (288)
Q Consensus 121 ~~l~~i~~a~ne-r~~f~~~~kL~~lyl~-~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE~~~y~~~~n~ 198 (288)
-+...++.|... +....+.+..|.+-+. .++...|..+.....+.... +. .+++ .| +.....+++.
T Consensus 19 ~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~-----~~---~~~~-~Y---~~~l~~~~d~ 86 (280)
T PF05843_consen 19 AARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPS-----DP---DFWL-EY---LDFLIKLNDI 86 (280)
T ss_dssp HHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT------H---HHHH-HH---HHHHHHTT-H
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC-----CH---HHHH-HH---HHHHHHhCcH
Confidence 333444444433 4456888888999666 56666699999998888553 32 3332 22 2455678999
Q ss_pred HHHHHHHHHHHhh
Q 023037 199 KKLKQLYQKALAI 211 (288)
Q Consensus 199 ~kak~~y~~A~~~ 211 (288)
..+|.++..|.+.
T Consensus 87 ~~aR~lfer~i~~ 99 (280)
T PF05843_consen 87 NNARALFERAISS 99 (280)
T ss_dssp HHHHHHHHHHCCT
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998755
No 323
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=27.04 E-value=4e+02 Score=25.15 Aligned_cols=31 Identities=19% Similarity=0.244 Sum_probs=25.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhh
Q 023037 59 QTVKLYYRLGKYKEMMDAYREMLTYIKSAVTR 90 (288)
Q Consensus 59 ~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~k 90 (288)
+|.+.+.+.|.|++++++......+. ...+.
T Consensus 111 ~Lm~~ci~~g~y~eALel~~~~~~L~-~~~~~ 141 (338)
T PF04124_consen 111 QLMDTCIRNGNYSEALELSAHVRRLQ-SRFPN 141 (338)
T ss_pred HHHHHHHhcccHhhHHHHHHHHHHHH-HhccC
Confidence 56788899999999999999888776 55554
No 324
>PF14346 DUF4398: Domain of unknown function (DUF4398)
Probab=26.87 E-value=1.9e+02 Score=22.17 Aligned_cols=59 Identities=14% Similarity=-0.018 Sum_probs=45.4
Q ss_pred CHHHHHHHHHHHHhhhccCCCh--hHHHHHHhhcchhhhhhccHHHHHHHHHHHHhhhhhh
Q 023037 197 NNKKLKQLYQKALAIKSAIPHP--RIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEA 255 (288)
Q Consensus 197 n~~kak~~y~~A~~~a~~I~~p--~i~a~I~~~~G~l~~~ekdy~~A~syF~EaF~~y~e~ 255 (288)
.+..++..+..|.......+-| .-.+.=.+.-+...+.+|||..|..+.++|-...+.+
T Consensus 18 ~l~~A~~ai~~A~~~~a~~~Ap~el~~A~~~L~~A~~a~~~~~y~~A~~~A~~A~~~A~~A 78 (103)
T PF14346_consen 18 ELSDAEAAIQRAEAAGAEQYAPVELKEAREKLQRAKAALDDGDYERARRLAEQAQADAELA 78 (103)
T ss_pred HHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 4678889999998885445445 4456666677788899999999999999998776653
No 325
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.56 E-value=5.3e+02 Score=23.97 Aligned_cols=104 Identities=16% Similarity=0.264 Sum_probs=62.6
Q ss_pred HhhhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchH---HHHHHHHHHHHHhh-cCHHHHHHHHHHHHhhh
Q 023037 137 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQL---LEVYAIEIQMYTET-KNNKKLKQLYQKALAIK 212 (288)
Q Consensus 137 ~~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~l---lEv~~lE~~~y~~~-~n~~kak~~y~~A~~~a 212 (288)
++.+|-|.+--+.++|.++..+..++-+..- |. .+| +-=|.+-.-+++-- .+.--++.++.+=....
T Consensus 155 KC~lKvA~yaa~leqY~~Ai~iyeqva~~s~------~n---~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~d 225 (288)
T KOG1586|consen 155 KCLLKVAQYAAQLEQYSKAIDIYEQVARSSL------DN---NLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELD 225 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------cc---hHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcC
Confidence 8899999999999999999999999877722 11 333 55566666666555 45444555555555555
Q ss_pred ccCCChhHHHHH-HhhcchhhhhhccHHHHHHHHHHHHhhhhhhC
Q 023037 213 SAIPHPRIMGII-RECGGKMHMAERQWADAATDFFEAFKNYDEAG 256 (288)
Q Consensus 213 ~~I~~p~i~a~I-~~~~G~l~~~ekdy~~A~syF~EaF~~y~e~g 256 (288)
.+-.+.|=---+ +++.. .+|+|- .-|-|..+.||...
T Consensus 226 P~F~dsREckflk~L~~a---ieE~d~----e~fte~vkefDsis 263 (288)
T KOG1586|consen 226 PAFTDSRECKFLKDLLDA---IEEQDI----EKFTEVVKEFDSIS 263 (288)
T ss_pred CcccccHHHHHHHHHHHH---HhhhhH----HHHHHHHHhhhccc
Confidence 454443211111 11111 134443 34788888887654
No 326
>KOG2168 consensus Cullins [Cell cycle control, cell division, chromosome partitioning]
Probab=26.51 E-value=5.5e+02 Score=27.79 Aligned_cols=31 Identities=23% Similarity=0.301 Sum_probs=22.1
Q ss_pred hHHhhhhHHHH--HhhhcchhHHHHHHHHHHHh
Q 023037 135 WFKTNLKLCKI--WFDMGEYGRMSKILKELHKS 165 (288)
Q Consensus 135 ~f~~~~kL~~l--yl~~~~y~~~~~ll~elkk~ 165 (288)
++.+-++++.+ ++..|++++|..+++.++-+
T Consensus 704 t~~lLl~~~~~f~~y~~~~~e~aL~~le~l~Li 736 (835)
T KOG2168|consen 704 TLSLLLDLVSFFDLYHNGEWEEALSILEHLDLI 736 (835)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcc
Confidence 55555565555 35678889898888888766
No 327
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=26.11 E-value=2.5e+02 Score=28.52 Aligned_cols=120 Identities=19% Similarity=0.192 Sum_probs=71.4
Q ss_pred hhhHHhhhhHHHHHhhh-----cchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHHHHHHHhhc-----CHHHHH
Q 023037 133 RLWFKTNLKLCKIWFDM-----GEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETK-----NNKKLK 202 (288)
Q Consensus 133 r~~f~~~~kL~~lyl~~-----~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE~~~y~~~~-----n~~kak 202 (288)
+.-+.-..+++..|+.- ++.+++..+++...+..... .++ ..-....-.+.+|.... |..+|.
T Consensus 241 ~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~---a~~----~~~~a~~~lg~~Y~~g~~~~~~d~~~A~ 313 (552)
T KOG1550|consen 241 LGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKA---ATK----GLPPAQYGLGRLYLQGLGVEKIDYEKAL 313 (552)
T ss_pred hcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHH---Hhh----cCCccccHHHHHHhcCCCCccccHHHHH
Confidence 33344556666666643 45666666666664410000 010 01123334566666532 788899
Q ss_pred HHHHHHHhhhccCCC-hhHHHHHHhhcchhhhhhccHHHHHHHHHHHHhhhhhhCChhHHHHhHHHHHHHH
Q 023037 203 QLYQKALAIKSAIPH-PRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYLVLANM 272 (288)
Q Consensus 203 ~~y~~A~~~a~~I~~-p~i~a~I~~~~G~l~~~ekdy~~A~syF~EaF~~y~e~g~~~a~~~LKY~~L~~i 272 (288)
.+|++|-.. .-++ -...|++.+.|. .++|++.|+.||..| -..|.+.+ ..++.+|-.
T Consensus 314 ~~~~~aA~~--g~~~a~~~lg~~~~~g~----~~~d~~~A~~yy~~A----a~~G~~~A---~~~la~~y~ 371 (552)
T KOG1550|consen 314 KLYTKAAEL--GNPDAQYLLGVLYETGT----KERDYRRAFEYYSLA----AKAGHILA---IYRLALCYE 371 (552)
T ss_pred HHHHHHHhc--CCchHHHHHHHHHHcCC----ccccHHHHHHHHHHH----HHcCChHH---HHHHHHHHH
Confidence 999987433 3344 677888888877 789999999999988 44566655 344444444
No 328
>PRK10941 hypothetical protein; Provisional
Probab=25.66 E-value=5.1e+02 Score=23.88 Aligned_cols=77 Identities=12% Similarity=-0.043 Sum_probs=56.5
Q ss_pred HHHHHhhhhhhhHHhhhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHHHHHHHhhcCHHHHHH
Q 023037 124 KALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQ 203 (288)
Q Consensus 124 ~~i~~a~ner~~f~~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE~~~y~~~~n~~kak~ 203 (288)
+.++.+.+....-|...+|-..|.+.+++.+|..++..+....+ ||. .-+---+-+|..++.+..|..
T Consensus 169 ~~L~~a~~~~il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P-----~dp-------~e~RDRGll~~qL~c~~~A~~ 236 (269)
T PRK10941 169 EDLDEADNIEVIRKLLDTLKAALMEEKQMELALRASEALLQFDP-----EDP-------YEIRDRGLIYAQLDCEHVALS 236 (269)
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCC-----CCH-------HHHHHHHHHHHHcCCcHHHHH
Confidence 45556666666669999999999999999999999999999854 343 222334556888888888887
Q ss_pred HHHHHHhhh
Q 023037 204 LYQKALAIK 212 (288)
Q Consensus 204 ~y~~A~~~a 212 (288)
-|..-..-.
T Consensus 237 DL~~fl~~~ 245 (269)
T PRK10941 237 DLSYFVEQC 245 (269)
T ss_pred HHHHHHHhC
Confidence 776665443
No 329
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=25.52 E-value=2.4e+02 Score=28.60 Aligned_cols=57 Identities=14% Similarity=0.086 Sum_probs=41.7
Q ss_pred hhcCHHHHHHHHHHHHhhhccCCC-hhHHHHHHhhcchhhhhhccHHHHHHHHHHHHhhhhhhC
Q 023037 194 ETKNNKKLKQLYQKALAIKSAIPH-PRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAG 256 (288)
Q Consensus 194 ~~~n~~kak~~y~~A~~~a~~I~~-p~i~a~I~~~~G~l~~~ekdy~~A~syF~EaF~~y~e~g 256 (288)
+..-++-||.+++++++.. -+.| -.|-... +=|...+|+.+|+.-|--+++.|...|
T Consensus 409 r~~Gl~aaR~~F~k~rk~~-~~~h~vyi~~A~-----~E~~~~~d~~ta~~ifelGl~~f~d~~ 466 (660)
T COG5107 409 RKRGLEAARKLFIKLRKEG-IVGHHVYIYCAF-----IEYYATGDRATAYNIFELGLLKFPDST 466 (660)
T ss_pred HHhhHHHHHHHHHHHhccC-CCCcceeeeHHH-----HHHHhcCCcchHHHHHHHHHHhCCCch
Confidence 4456788999999999887 3344 4443332 236789999999999999999986433
No 330
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=25.41 E-value=2.3e+02 Score=28.83 Aligned_cols=28 Identities=11% Similarity=0.275 Sum_probs=22.6
Q ss_pred hHHhhhhHHHHHhhhcchhHHHHHHHHH
Q 023037 135 WFKTNLKLCKIWFDMGEYGRMSKILKEL 162 (288)
Q Consensus 135 ~f~~~~kL~~lyl~~~~y~~~~~ll~el 162 (288)
.+.+.-+|+..+++.+.|.+++.++.+-
T Consensus 294 ~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 294 NLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred hhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 4456678888999999999999888763
No 331
>TIGR02878 spore_ypjB sporulation protein YpjB. Members of this protein, YpjB, family are restricted to a subset of endospore-forming bacteria, including Bacillus species but not CLostridium or some others. In Bacillus subtilis, ypjB was found to be part of the sigma-E regulon, where sigma-E is a sporulation sigma factor that regulates expression in the mother cell compartment. Null mutants of ypjB show a sporulation defect. This protein family is not, however, a part of the endospore formation minimal gene set.
Probab=25.10 E-value=2.2e+02 Score=25.92 Aligned_cols=23 Identities=9% Similarity=0.101 Sum_probs=19.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHH
Q 023037 62 KLYYRLGKYKEMMDAYREMLTYI 84 (288)
Q Consensus 62 ~l~~~~g~~~~~l~~~~~~l~~~ 84 (288)
--+.++|+|++|.+.+..+-..|
T Consensus 13 LQl~K~~~yeeAkqvL~yFs~~F 35 (233)
T TIGR02878 13 LQLTKQARYEEAKQVLEYFSKQF 35 (233)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHH
Confidence 35788999999999988887777
No 332
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=24.95 E-value=7.8e+02 Score=25.41 Aligned_cols=125 Identities=18% Similarity=0.263 Sum_probs=61.3
Q ss_pred hhhhHHHHHHhhcccCCCCHHHHHHHHHHhhcCC-ccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhh
Q 023037 13 FTVSRVLCSILEKGLVETDPEGALAGFAEVVAME-PEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRN 91 (288)
Q Consensus 13 ~~~~~~~~y~~ak~~~~~d~~~Al~~f~~ii~~~-~e~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka 91 (288)
...+++...|.- .+..+||..|+++|--+=... ++.....-.++ ..+....++++.++. -+++..++
T Consensus 325 ln~arLI~~Y~~-~F~~td~~~Al~Y~~li~~~~~~~~~~l~~~~l---~eLvletref~~LLG-------~i~~dG~r- 392 (613)
T PF04097_consen 325 LNFARLIGQYTR-SFEITDPREALQYLYLICLFKDPEQRNLFHECL---RELVLETREFDLLLG-------DINPDGSR- 392 (613)
T ss_dssp --HHHHHHHHHH-TTTTT-HHHHHHHHHGGGGS-SCCHHHHHHHHH---HHHHHHH--HHHHHE-------EE-TTS-E-
T ss_pred cCHHHHHHHHHH-HHhccCHHHHHHHHHHHHHcCCchHHHHHHHHH---HHHHHccCCHHHHCC-------CCCCCCcc-
Confidence 345778888887 789999999999988665432 22333333333 334444444443332 22111111
Q ss_pred hHHHHHHHHHHH------hccCCCcchhhHHHHHHHHHHHHHHhhhhhhhHHhhhhHHHHHhhhcchhHHHHHHHHHHHh
Q 023037 92 YSEKCINNIMDF------VSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKS 165 (288)
Q Consensus 92 ~~~k~i~~ild~------~~~~~~~~~~~~~~~~~~~l~~i~~a~ner~~f~~~~kL~~lyl~~~~y~~~~~ll~elkk~ 165 (288)
...+||. +... .+....++ ...-+.+.++.++... +.||.-.|+|+++.+++.++..-
T Consensus 393 -----~~G~i~~~~~Li~~~~~----~~~~~~i~---~~~A~~~e~~g~~~dA----i~Ly~La~~~d~vl~lln~~Ls~ 456 (613)
T PF04097_consen 393 -----TPGLIERRLSLIKFDDD----EDFLREII---EQAAREAEERGRFEDA----ILLYHLAEEYDKVLSLLNRLLSQ 456 (613)
T ss_dssp -----EE-HHHHTGGGGT-SSS----SHHHHHHH---HHHHHHHHHCT-HHHH----HHHHHHTT-HHHHHHHHHHHHHH
T ss_pred -----ccceeeccccccCCCCc----HHHHHHHH---HHHHHHHHHCCCHHHH----HHHHHHHhhHHHHHHHHHHHHHH
Confidence 3344554 2211 11333333 3333344455555432 46788888999987777666554
No 333
>PHA03161 hypothetical protein; Provisional
Probab=24.59 E-value=3.5e+02 Score=22.91 Aligned_cols=45 Identities=13% Similarity=0.049 Sum_probs=35.5
Q ss_pred HHHHHhccCCCcchhhHHHHHHHHHHHHHHhhhhhhhHHhhhhHHHHHh
Q 023037 99 NIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWF 147 (288)
Q Consensus 99 ~ild~~~~~~~~~~~~~~~~~~~~l~~i~~a~ner~~f~~~~kL~~lyl 147 (288)
++.|+||.... .-..+++.|...+..+++-+....+...+..+-.
T Consensus 24 S~fDRFG~~s~----lF~~Qf~~t~~~lr~~~~~~~~~~i~~~v~~l~~ 68 (150)
T PHA03161 24 SLFDRFGEKNC----IFLHQLDHTKKSLIKHENLKKQKSIEGMLQAVDL 68 (150)
T ss_pred hHHhhcCCccH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788986544 7799999999999999888888888777774443
No 334
>PF14276 DUF4363: Domain of unknown function (DUF4363)
Probab=24.55 E-value=3.5e+02 Score=21.26 Aligned_cols=49 Identities=18% Similarity=0.229 Sum_probs=24.1
Q ss_pred cchhhHHHHHHHHHHHHHHhhhhhhhHHhhhhHHHHHhhhcchhHHHHHHHHHHHhccC
Q 023037 110 QNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQR 168 (288)
Q Consensus 110 ~~~~~~~~~~~~~l~~i~~a~ner~~f~~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~ 168 (288)
.+++...+..+...+ .|.+..++| .++.+..+++.+..-+.+++...+.
T Consensus 42 ~dW~~A~~~~~~l~~--~W~k~~~~~--------~~~~~h~eid~i~~sl~rl~~~i~~ 90 (121)
T PF14276_consen 42 EDWEKAYKETEELEK--EWDKNKKRW--------SILIEHQEIDNIDISLARLKGYIEA 90 (121)
T ss_pred CCHHHHHHHHHHHHH--HHHhhchhe--------eeeecHHHHHHHHHHHHHHHHHHHC
Confidence 344444444443333 355555554 4445555555555555555555443
No 335
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=24.02 E-value=8.9e+02 Score=25.78 Aligned_cols=63 Identities=11% Similarity=0.205 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhH--HHHHHhhcchhhhhhccHHHHHHHHHHH
Q 023037 182 LEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRI--MGIIRECGGKMHMAERQWADAATDFFEA 248 (288)
Q Consensus 182 lEv~~lE~~~y~~~~n~~kak~~y~~A~~~a~~I~~p~i--~a~I~~~~G~l~~~ekdy~~A~syF~Ea 248 (288)
--+..--.+.|-.-+++..||.++++|.. ++-|.+ .+.|-..=|-|-+.-++++.|.+..-.|
T Consensus 387 ~~Lw~~faklYe~~~~l~~aRvifeka~~----V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A 451 (835)
T KOG2047|consen 387 GTLWVEFAKLYENNGDLDDARVIFEKATK----VPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRA 451 (835)
T ss_pred hhHHHHHHHHHHhcCcHHHHHHHHHHhhc----CCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhh
Confidence 44555568888888899999999988744 344444 5666666678888888888887755444
No 336
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=23.98 E-value=8e+02 Score=25.21 Aligned_cols=70 Identities=14% Similarity=0.301 Sum_probs=38.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH--hccCCCcchhhHHHHHHHHHHHHH
Q 023037 58 KQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDF--VSGSASQNFSLLREFYQTTLKALE 127 (288)
Q Consensus 58 ~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~--~~~~~~~~~~~~~~~~~~~l~~i~ 127 (288)
....++--..|+.+...+.|.....-.-+...|.+=-.-|=--|++ +..+.-.+.+...++|..|++.|-
T Consensus 326 fdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIP 397 (677)
T KOG1915|consen 326 FDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIP 397 (677)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcC
Confidence 3455666777888999888888776662223333322222221221 112222345566777777777554
No 337
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=23.85 E-value=6.8e+02 Score=24.32 Aligned_cols=128 Identities=9% Similarity=0.095 Sum_probs=78.5
Q ss_pred HHHHHHHHhhcCCccc--hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhccCCCcc
Q 023037 34 GALAGFAEVVAMEPEK--AEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQN 111 (288)
Q Consensus 34 ~Al~~f~~ii~~~~e~--~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~~~~~~~~~ 111 (288)
+=|+.+.+-++..++. .-.+-.|....+.-|++.||-+.+++.++....=. ++-..-=+.+-.+|- ++-.- .+
T Consensus 82 eki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~kt---vs~g~kiDVvf~~iR-lglfy-~D 156 (393)
T KOG0687|consen 82 EKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKT---VSLGHKIDVVFYKIR-LGLFY-LD 156 (393)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH---hhcccchhhHHHHHH-HHHhh-cc
Confidence 3455555555543322 22456788899999999999999999998775543 221111122221111 11111 34
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhhHHhhhhHHHHHhhhcchhHHHHHHHHHHHhc
Q 023037 112 FSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSC 166 (288)
Q Consensus 112 ~~~~~~~~~~~l~~i~~a~ner~~f~~~~kL~~lyl~~~~y~~~~~ll~elkk~~ 166 (288)
.+.+.+.++.+...++.-++=-|-=|+..-.|---+..++|.+|-.|+-+.....
T Consensus 157 ~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTF 211 (393)
T KOG0687|consen 157 HDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLYCMSVRNFKEAADLFLDSVSTF 211 (393)
T ss_pred HHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHcccc
Confidence 5688899999999999665332222444445666677889999888887776553
No 338
>PF08926 DUF1908: Domain of unknown function (DUF1908); InterPro: IPR015022 This domain is found in microtubule-associated serine/threonine-protein kinases. ; GO: 0000287 magnesium ion binding, 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1V9V_A.
Probab=23.37 E-value=1.9e+02 Score=27.01 Aligned_cols=61 Identities=16% Similarity=0.263 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHhhhhhhh---H-HhhhhHHHHHhhhcchh------HHHHHHHHHHHhccCCCCCccccccchHHHHH
Q 023037 116 REFYQTTLKALEEAKNERLW---F-KTNLKLCKIWFDMGEYG------RMSKILKELHKSCQREDGTDDQKKGSQLLEVY 185 (288)
Q Consensus 116 ~~~~~~~l~~i~~a~ner~~---f-~~~~kL~~lyl~~~~y~------~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~ 185 (288)
.++++++.+|++++++.-.+ | .+.=||-.|+-+..+-. .+..+++++.-++..+ .-|||+.
T Consensus 166 HQivElARDCL~KS~~~lITs~YF~ElsEnLekLl~ea~erS~~~~~~~~~~lvrklL~IisRP---------ARLLEcL 236 (282)
T PF08926_consen 166 HQIVELARDCLQKSREGLITSRYFYELSENLEKLLQEAHERSESEEVAFVTQLVRKLLIIISRP---------ARLLECL 236 (282)
T ss_dssp HHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHHHHTS-HHHHHHHHHHHHHHHHHHSS-----------------
T ss_pred HHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcch---------hhhhhhh
Confidence 67779999999999866333 3 77778888888776665 2566677776665444 6666654
No 339
>PF04675 DNA_ligase_A_N: DNA ligase N terminus; InterPro: IPR012308 DNA ligase (polydeoxyribonucleotide synthase) is the enzyme that joins two DNA fragments by catalysing the formation of an internucleotide ester bond between phosphate and deoxyribose. It is active during DNA replication, DNA repair and DNA recombination. There are two forms of DNA ligase, one requires ATP (6.5.1.1 from EC), the other NAD (6.5.1.2 from EC), the latter being restricted to eubacteria. Eukaryotic, archaebacterial, viral and some eubacterial DNA ligases are ATP-dependent. The first step in the ligation reaction is the formation of a covalent enzyme-AMP complex. The co-factor ATP is cleaved to pyrophosphate and AMP, with the AMP being covalently joined to a highly conserved lysine residue in the active site of the ligase. The activated AMP residue is then transferred to the 5'phosphate of the nick, before the nick is sealed by phosphodiester-bond formation and AMP elimination [,]. Vertebrate cells encode three well-characterised DNA ligases (DNA ligases I, III and IV), all of which are related in structure and sequence. With the exception of the atypically small PBCV-1 viral enzyme, two regions of primary sequence are common to all members of the family. The catalytic region comprises six conserved sequence motifs (I, III, IIIa, IV, V-VI), motif I includes the lysine residue that is adenylated in the first step of the ligation reaction. The function of the second, less well-conserved region is unknown. When folded, each protein comprises of two distinct sub-domains: a large amino-terminal sub-domain ('domain 1') and a smaller carboxy-terminal sub-domain ('domain 2'). The ATP-binding site of the enzyme lies in the cleft between the two sub-domains. Domain 1 consists of two antiparallel beta sheets flanked by alpha helices, whereas domain 2 consists of a five-stranded beta barrel and a single alpha helix, which form the oligonucleotide-binding fold [, ]. This region is found in many but not all ATP-dependent DNA ligase enzymes (6.5.1.1 from EC). It is thought to be involved in DNA binding and in catalysis. In human DNA ligase I (P18858 from SWISSPROT), and in Saccharomyces cerevisiae (Baker's yeast) (P04819 from SWISSPROT), this region was necessary for catalysis, and separated from the amino terminus by targeting elements. In Vaccinia virus (P16272 from SWISSPROT) this region was not essential for catalysis, but deletion decreases the affinity for nicked DNA and decreased the rate of strand joining at a step subsequent to enzyme-adenylate formation []. ; GO: 0003677 DNA binding, 0003910 DNA ligase (ATP) activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 2CFM_A 3RR5_A 2HIX_A 2HIV_A 3L2P_A 1X9N_A 4EQ5_A 3GDE_A.
Probab=23.10 E-value=2.7e+02 Score=23.23 Aligned_cols=71 Identities=13% Similarity=0.172 Sum_probs=39.6
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHHHHhh-hhhhhH
Q 023037 63 LYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAK-NERLWF 136 (288)
Q Consensus 63 l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~~~~~~~~~~~~~~~~~~~~l~~i~~a~-ner~~f 136 (288)
.|.+.||..++++.+..-.... ...+..-+-.-|+..||.++...+ ........++....++.+. .|.+|+
T Consensus 83 ~~~~~GD~g~~~~~~~~~~~~~-~~~~~~lTi~~V~~~L~~la~~~g--~~s~~~k~~~l~~ll~~~s~~E~k~i 154 (177)
T PF04675_consen 83 SYKKVGDLGEVAEEVLQKRKSE-TSKPSPLTISEVNETLDELAAASG--KGSQDEKIDILKELLRRCSPEEAKWI 154 (177)
T ss_dssp HHHHHS-HHHHHHHHHHHHTTT-S--SS--BHHHHHHHHHHHHH--S--TTHHHHHHHHHHHHHTTS-HHHHHHH
T ss_pred HHHhcCcHHHHHHHHHhhcccc-ccCCCCCCHHHHHHHHHHHHHhhC--ccchHHHHHHHHHHHHhCCHHHHHHH
Confidence 4446788888877666554433 222456667778888888887643 2245555566666666554 456665
No 340
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=23.08 E-value=9.9e+02 Score=25.96 Aligned_cols=145 Identities=15% Similarity=0.197 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hhhhhhhHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHHHHhh
Q 023037 53 GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIK--SAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAK 130 (288)
Q Consensus 53 ~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~--~~v~ka~~~k~i~~ild~~~~~~~~~~~~~~~~~~~~l~~i~~a~ 130 (288)
.+.+..+|+.++++.|+.+++-..=..+-..+- +.+-+....+-+ +-.++ .....+++++.+.+-..+
T Consensus 112 ~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~-------~mt~s---~~~~~v~~~~ekal~dy~ 181 (881)
T KOG0128|consen 112 KYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDEL-------SMTQS---EERKEVEELFEKALGDYN 181 (881)
T ss_pred chHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHH-------hhccC---cchhHHHHHHHHHhcccc
Confidence 567888999999999999887655444443330 344454444433 22221 255667777777766555
Q ss_pred hhhhhH-Hh--hhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHHHHHHHhhcCHHHHHHHHHH
Q 023037 131 NERLWF-KT--NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQK 207 (288)
Q Consensus 131 ner~~f-~~--~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE~~~y~~~~n~~kak~~y~~ 207 (288)
.--+|. .+ -..-++.+...++|.....+....++.+.- --++|.-+.|.|.--...|..--...++-++.+.
T Consensus 182 ~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~-----~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~ 256 (881)
T KOG0128|consen 182 SVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGS-----HITEGAAIWEMYREFEVTYLCNVEQRQVIALFVR 256 (881)
T ss_pred cchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhh-----hhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 556666 22 234445566778888888887777776321 1235677888888777777665555677777776
Q ss_pred HHhhh
Q 023037 208 ALAIK 212 (288)
Q Consensus 208 A~~~a 212 (288)
.+...
T Consensus 257 el~~~ 261 (881)
T KOG0128|consen 257 ELKQP 261 (881)
T ss_pred HHhcc
Confidence 66554
No 341
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.80 E-value=6.4e+02 Score=23.62 Aligned_cols=96 Identities=6% Similarity=0.065 Sum_probs=63.8
Q ss_pred hHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHHHHHHHhhcCHHHHHHHHHHH----Hhhhc-cC
Q 023037 141 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKA----LAIKS-AI 215 (288)
Q Consensus 141 kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE~~~y~~~~n~~kak~~y~~A----~~~a~-~I 215 (288)
-.|.=.++..+-++|..++++...+.++. |. ...-.|.+.-=++++..++.+..+--++.+- ..+.+ .-
T Consensus 115 eKAak~lenv~Pd~AlqlYqralavve~~----dr--~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~ 188 (308)
T KOG1585|consen 115 EKAAKALENVKPDDALQLYQRALAVVEED----DR--DQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNS 188 (308)
T ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHhcc----ch--HHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhccc
Confidence 34444556666677888888888887764 33 1455788888888888888877765444433 23333 22
Q ss_pred CChhHHHHHHhhcchhhhhhccHHHHHHHHHH
Q 023037 216 PHPRIMGIIRECGGKMHMAERQWADAATDFFE 247 (288)
Q Consensus 216 ~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~E 247 (288)
+|...+|.| .+|....||..|-..|-+
T Consensus 189 ~~k~~va~i-----lv~L~~~Dyv~aekc~r~ 215 (308)
T KOG1585|consen 189 QCKAYVAAI-----LVYLYAHDYVQAEKCYRD 215 (308)
T ss_pred HHHHHHHHH-----HHHhhHHHHHHHHHHhcc
Confidence 224566666 468889999999888877
No 342
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=22.70 E-value=94 Score=26.61 Aligned_cols=43 Identities=16% Similarity=0.176 Sum_probs=0.0
Q ss_pred HHHHhhcchhhhhhccHHHHHHHHHHHHhhhhhhCChhHHHHh
Q 023037 222 GIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCL 264 (288)
Q Consensus 222 a~I~~~~G~l~~~ekdy~~A~syF~EaF~~y~e~g~~~a~~~L 264 (288)
..++++-|.+|+..|+|..|...|-+--+.--..+.-+++.++
T Consensus 44 ~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~ 86 (160)
T PF09613_consen 44 PELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLAL 86 (160)
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHH
No 343
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=22.66 E-value=3e+02 Score=20.77 Aligned_cols=52 Identities=25% Similarity=0.330 Sum_probs=33.1
Q ss_pred CCCCHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 023037 28 VETDPEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREML 81 (288)
Q Consensus 28 ~~~d~~~Al~~f~~ii~~~~e~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l 81 (288)
..+++++|++.+..+|..+.+..+ ..+=+.+..++.-.|.-+-+..-|++-+
T Consensus 34 ~~g~~e~Al~~Ll~~v~~dr~~~~--~~ar~~ll~~f~~lg~~~plv~~~RRkL 85 (90)
T PF14561_consen 34 AAGDYEEALDQLLELVRRDRDYED--DAARKRLLDIFELLGPGDPLVSEYRRKL 85 (90)
T ss_dssp HTT-HHHHHHHHHHHHCC-TTCCC--CHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhCccccc--cHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 478899999999999998653222 2444577778887887666666555433
No 344
>PF09577 Spore_YpjB: Sporulation protein YpjB (SpoYpjB); InterPro: IPR014231 Proteins in thie entry, typified by YpjB, are restricted to a subset of the endospore-forming bacteria which includes Bacillus species, but not species. In Bacillus subtilis, ypjB was found to be part of the sigma-E regulon []. Sigma-E is a sporulation sigma factor that regulates expression in the mother cell compartment. Null mutants of ypjB show a sporulation defect, but this gene is not, however, a part of the endospore formation minimal gene set.
Probab=22.21 E-value=2.7e+02 Score=25.26 Aligned_cols=90 Identities=14% Similarity=0.187 Sum_probs=50.4
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHhhhhh---hhHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHHHHh---hhhhhhH
Q 023037 63 LYYRLGKYKEMMDAYREMLTYIKSAVTR---NYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEA---KNERLWF 136 (288)
Q Consensus 63 l~~~~g~~~~~l~~~~~~l~~~~~~v~k---a~~~k~i~~ild~~~~~~~~~~~~~~~~~~~~l~~i~~a---~ner~~f 136 (288)
-+.++|+|++|.+.+..+-.-| ..++- .-+...||.|-. -|+-+.+.+... .+++.+-
T Consensus 14 qlvk~~~yeeA~q~l~~fs~~f-~~~~~~~~~~t~e~iralT~---------------t~~~a~~al~~~~~~~~e~~~~ 77 (232)
T PF09577_consen 14 QLVKQGKYEEAKQLLEYFSEQF-TSVDFKGRPLTMEEIRALTE---------------TIEEAKKALTSVSMSEEEKIRA 77 (232)
T ss_pred HHHHcccHHHHHHHHHHHHHHH-hhccccccccCHHHHHHHHH---------------HHHHHHHHHHccCCCHHHHHHH
Confidence 4578999999999999888877 54432 244555554322 233333334333 2445555
Q ss_pred HhhhhHHHHHhhhcc-------hhHHHHHHHHHHHhccC
Q 023037 137 KTNLKLCKIWFDMGE-------YGRMSKILKELHKSCQR 168 (288)
Q Consensus 137 ~~~~kL~~lyl~~~~-------y~~~~~ll~elkk~~~~ 168 (288)
-+.+||+.-=+..+. |..+..-++.+++....
T Consensus 78 at~~RLavDAl~~~~qPLW~~~e~~i~~~~~~mk~a~~~ 116 (232)
T PF09577_consen 78 ATQFRLAVDALTHKHQPLWLQYEKPIMEDFQRMKQAAQK 116 (232)
T ss_pred HHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHh
Confidence 667777765554433 22244555555555443
No 345
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=22.10 E-value=3.7e+02 Score=20.65 Aligned_cols=193 Identities=13% Similarity=0.104 Sum_probs=106.0
Q ss_pred HHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHhhhhhhhHHHHHHHHHHHhccCCCc
Q 023037 32 PEGALAGFAEVVAMEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTY-IKSAVTRNYSEKCINNIMDFVSGSASQ 110 (288)
Q Consensus 32 ~~~Al~~f~~ii~~~~e~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~-~~~~v~ka~~~k~i~~ild~~~~~~~~ 110 (288)
...++..+...+...... .........+..+...+++..+...+...+.. .............. ..
T Consensus 39 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~------ 105 (291)
T COG0457 39 LAEALELLEEALELLPNS--DLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGL-----LL------ 105 (291)
T ss_pred HHHHHHHHHHHHhcCccc--cchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHH-----HH------
Confidence 344445555444432211 12455667778888888888888877777653 10111111111000 00
Q ss_pred chhhHHHHHHHHHHHHHHhhhhhhh-HHhhhhHHH-HHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHH
Q 023037 111 NFSLLREFYQTTLKALEEAKNERLW-FKTNLKLCK-IWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIE 188 (288)
Q Consensus 111 ~~~~~~~~~~~~l~~i~~a~ner~~-f~~~~kL~~-lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE 188 (288)
.....+..+.+.+..+...... ......... ++...|+++++...+.+.....+. . ......+...
T Consensus 106 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~------~---~~~~~~~~~~ 173 (291)
T COG0457 106 ---EALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPE------L---NELAEALLAL 173 (291)
T ss_pred ---HHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------c---cchHHHHHHh
Confidence 1111122233333322211000 112222333 899999999999999988443110 0 1223333334
Q ss_pred HHHHHhhcCHHHHHHHHHHHHhhhccCCChhHHHHHHhhcchhhhhhccHHHHHHHHHHHHhhhhh
Q 023037 189 IQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDE 254 (288)
Q Consensus 189 ~~~y~~~~n~~kak~~y~~A~~~a~~I~~p~i~a~I~~~~G~l~~~ekdy~~A~syF~EaF~~y~e 254 (288)
...+...+++..+...+..+....... ........|..+...+++..|..++-.+++....
T Consensus 174 ~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 234 (291)
T COG0457 174 GALLEALGRYEEALELLEKALKLNPDD-----DAEALLNLGLLYLKLGKYEEALEYYEKALELDPD 234 (291)
T ss_pred hhHHHHhcCHHHHHHHHHHHHhhCccc-----chHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc
Confidence 444778889999999999988877764 3344455566666667899999999998887654
No 346
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.67 E-value=6.8e+02 Score=23.56 Aligned_cols=57 Identities=14% Similarity=0.052 Sum_probs=40.4
Q ss_pred hhhHHhhhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHHHHHHHhhcCHHHH
Q 023037 133 RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKL 201 (288)
Q Consensus 133 r~~f~~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE~~~y~~~~n~~ka 201 (288)
..+-.+.+-+|.+.+.+|+|.+|..+++++...-. .| -|..+.-+-.-..+|.-+.+
T Consensus 204 ~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~-----~d-------petL~Nliv~a~~~Gkd~~~ 260 (299)
T KOG3081|consen 204 PPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA-----KD-------PETLANLIVLALHLGKDAEV 260 (299)
T ss_pred CCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC-----CC-------HHHHHHHHHHHHHhCCChHH
Confidence 34447788999999999999999999999987711 22 25566666666666654443
No 347
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=21.55 E-value=58 Score=27.68 Aligned_cols=27 Identities=19% Similarity=0.169 Sum_probs=21.5
Q ss_pred HHHHhhcchhhhhhccHHHHHHHHHHH
Q 023037 222 GIIRECGGKMHMAERQWADAATDFFEA 248 (288)
Q Consensus 222 a~I~~~~G~l~~~ekdy~~A~syF~Ea 248 (288)
+.++++-|.+|+..|+|..|...|-+-
T Consensus 44 ~e~d~~dg~l~i~rg~w~eA~rvlr~l 70 (153)
T TIGR02561 44 KELDMFDGWLLIARGNYDEAARILREL 70 (153)
T ss_pred cccchhHHHHHHHcCCHHHHHHHHHhh
Confidence 567888888888888888888887654
No 348
>PF09455 Cas_DxTHG: CRISPR-associated (Cas) DxTHG family; InterPro: IPR019016 Cas are a group of proteins associated with clustered regularly interspaced short palindromic repeats - CRISPS - of DNA found in nearly half of bacterial and archaeal genomes. The family describes Cas proteins of about 400 residues that include the motif [VIL]-D-x-[ST]-H-[GS]. The CRISPR and associated proteins are thought to be involved in the evolution of host resistance []. The exact molecular function of this family is currently unknown. ; PDB: 2I71_B.
Probab=21.19 E-value=5e+02 Score=24.40 Aligned_cols=46 Identities=17% Similarity=0.356 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHhhhhhhhHHhhhhHHHHHhhhcchhHHHHHHHH
Q 023037 116 REFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKE 161 (288)
Q Consensus 116 ~~~~~~~l~~i~~a~ner~~f~~~~kL~~lyl~~~~y~~~~~ll~e 161 (288)
..+.+...+.+.+.......+....+++..|++.|.|..+..+++|
T Consensus 271 ~~~l~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~l~~E 316 (384)
T PF09455_consen 271 KLLLDKIIEKYKPFKKDESSLEDQLKLIEWYLERGLYQQALTLLRE 316 (384)
T ss_dssp HHHHHHHHHHHGGG-S-E-EHHHHHHHHHHHS-H---HHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccCcccHHHHHHHHHHHHHhhhhHHHHHHHHh
Confidence 3444444444444433444478899999999999999999999999
No 349
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=20.93 E-value=6.3e+02 Score=22.87 Aligned_cols=113 Identities=15% Similarity=0.029 Sum_probs=80.0
Q ss_pred hhhHHhhhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhh-
Q 023037 133 RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAI- 211 (288)
Q Consensus 133 r~~f~~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE~~~y~~~~n~~kak~~y~~A~~~- 211 (288)
.-...+-++.+.+-...|.++-|...+..+.+.-.... .....|...+.++....|+-.+|...+......
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~--------~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~ 214 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSE--------SLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCR 214 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCccc--------CCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 33446788999999999999999999999988722211 225688889999999999988888777666651
Q ss_pred hc-c------------------------CCC--hhHHHHHHhhcchhhhhh------ccHHHHHHHHHHHHhhhh
Q 023037 212 KS-A------------------------IPH--PRIMGIIRECGGKMHMAE------RQWADAATDFFEAFKNYD 253 (288)
Q Consensus 212 a~-~------------------------I~~--p~i~a~I~~~~G~l~~~e------kdy~~A~syF~EaF~~y~ 253 (288)
-. . +.+ +.+.|....+-|...... ++++.+..+|-+|.+-.+
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 289 (352)
T PF02259_consen 215 LSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDP 289 (352)
T ss_pred hhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhCh
Confidence 11 1 112 566677777666666555 777777777777766543
No 350
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=20.86 E-value=6.3e+02 Score=22.86 Aligned_cols=171 Identities=10% Similarity=0.062 Sum_probs=92.3
Q ss_pred HcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHHHHhhhhhhhH-HhhhhHHH
Q 023037 66 RLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWF-KTNLKLCK 144 (288)
Q Consensus 66 ~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~~~~~~~~~~~~~~~~~~~~l~~i~~a~ner~~f-~~~~kL~~ 144 (288)
..|+++++..++...+..+-+.. .+-...+.....+.+...+- ...++++.+......+.....+..+ .-.-|+-.
T Consensus 41 ~~~~~~~~~~~i~~~r~~~~~~l-~~~~~~s~~~~y~~l~~lq~--L~Elee~~~~~~~~~~~~~~~~~l~~~W~~Rl~~ 117 (352)
T PF02259_consen 41 RQGDYDEAKKYIEKARQLLLDEL-SALSSESYQRAYPSLVKLQQ--LVELEEIIELKSNLSQNPQDLKSLLKRWRSRLPN 117 (352)
T ss_pred hCccHHHHHHHHHHHHHHHHHHH-HHhhhhhHHHHHHHHHHHhH--HHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHH
Confidence 88999999999998888773332 22334444444444432221 1123333333222111011111122 22334433
Q ss_pred HHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCChhHHHHH
Q 023037 145 IWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGII 224 (288)
Q Consensus 145 lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE~~~y~~~~n~~kak~~y~~A~~~a~~I~~p~i~a~I 224 (288)
..-+-.-...+..+=+-+.+.+ ... .-+.+.++--+++....|++.-|..++..+.......... ...+
T Consensus 118 ~~~~~~~~~~il~~R~~~l~~~------~~~---~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~--~~~v 186 (352)
T PF02259_consen 118 MQDDFSVWEPILSLRRLVLSLI------LLP---EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESL--LPRV 186 (352)
T ss_pred hccchHHHHHHHHHHHHHHhcc------cch---hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCC--Ccch
Confidence 3222222233333333333322 111 5567888888999999999999999998887654221110 2234
Q ss_pred HhhcchhhhhhccHHHHHHHHHHHHh
Q 023037 225 RECGGKMHMAERQWADAATDFFEAFK 250 (288)
Q Consensus 225 ~~~~G~l~~~ekdy~~A~syF~EaF~ 250 (288)
...--++.-..|+-..|+...-+..+
T Consensus 187 ~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 187 FLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45556667777888889888877777
No 351
>KOG1662 consensus Mitochondrial F1F0-ATP synthase, subunit OSCP/ATP5 [Energy production and conversion]
Probab=20.62 E-value=1e+02 Score=27.46 Aligned_cols=81 Identities=17% Similarity=0.197 Sum_probs=44.1
Q ss_pred HhhhhHHHHHhhhcchhHHHHHHHHHHHhccCCCCCccccccchHHHHHHHHHHHHHhhcCHHHHHHH-HHHHHhhhc-c
Q 023037 137 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQL-YQKALAIKS-A 214 (288)
Q Consensus 137 ~~~~kL~~lyl~~~~y~~~~~ll~elkk~~~~~~~~dDk~~~~~llEv~~lE~~~y~~~~n~~kak~~-y~~A~~~a~-~ 214 (288)
..-.|+.+++.|.|+.....++.++...+ -+..+|.+.+||-..+=-=-..++.+.++.+. +.....+.- .
T Consensus 100 ~~t~NflnlLaeNgRL~~l~~Ivk~F~~l-------m~ahrGev~~~VtSa~pLd~~~~k~l~~~l~k~l~~gk~l~v~~ 172 (210)
T KOG1662|consen 100 PLTKNFLNLLAENGRLNNLTEIVKAFETL-------MNAHRGEVKVEVTSAEPLDAKQLKQLEKALQKILGGGKKLKVEN 172 (210)
T ss_pred HhHHHHHHHHHHcCchhhHHHHHHHHHHH-------HHHhCCceEEEEEecccCChHHHHHHHHHHHHHhcCCceEEEEe
Confidence 34457788888889888888888877776 55555565555543321111122333333332 444433332 3
Q ss_pred CCChhHHHHH
Q 023037 215 IPHPRIMGII 224 (288)
Q Consensus 215 I~~p~i~a~I 224 (288)
.-+|.|.|-.
T Consensus 173 ~vdPSI~GGl 182 (210)
T KOG1662|consen 173 KVDPSIIGGL 182 (210)
T ss_pred ecChhhhcce
Confidence 4457776643
No 352
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=20.20 E-value=8.1e+02 Score=23.86 Aligned_cols=123 Identities=15% Similarity=0.211 Sum_probs=73.8
Q ss_pred CCCCHHHHHHHHHHhhcCCc-cchhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhcc
Q 023037 28 VETDPEGALAGFAEVVAMEP-EKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSG 106 (288)
Q Consensus 28 ~~~d~~~Al~~f~~ii~~~~-e~~~~~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~~~~ 106 (288)
..+||..-+..++++..... ........-++.=|.=|++.++|..|.+.|++-+.-- -..+.|+-+|- .
T Consensus 54 ~~gd~~~~~~~LqslK~da~E~ep~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~k-------c~D~dlnavLY--~- 123 (390)
T KOG0551|consen 54 SEGDPNPDNVCLQSLKADAEEGEPHEQAENYKEEGNEYFKEKRYKDAVESYTEGLKKK-------CADPDLNAVLY--T- 123 (390)
T ss_pred CCCCCCccHHHHHHhhhccccCChHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhc-------CCCccHHHHHH--h-
Confidence 34555555666666665522 2334467778888999999999999999998876543 12223332221 0
Q ss_pred CCCcchhhHHHHHHHHHHHHHHhhhhhhh-----HHhhhhHHHHHhhhcchhHHHHHHHHHHHh
Q 023037 107 SASQNFSLLREFYQTTLKALEEAKNERLW-----FKTNLKLCKIWFDMGEYGRMSKILKELHKS 165 (288)
Q Consensus 107 ~~~~~~~~~~~~~~~~l~~i~~a~ner~~-----f~~~~kL~~lyl~~~~y~~~~~ll~elkk~ 165 (288)
|-...+.++.--..+|..|. .-|. .+..+|=|..+++...+.+|..-+.+...+
T Consensus 124 ----NRAAa~~~l~NyRs~l~Dcs-~al~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~ 182 (390)
T KOG0551|consen 124 ----NRAAAQLYLGNYRSALNDCS-AALKLKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQI 182 (390)
T ss_pred ----hHHHHHHHHHHHHHHHHHHH-HHHhcCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhh
Confidence 11122333344444444442 1222 277778888888888888877777777665
No 353
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.09 E-value=1.6e+02 Score=31.95 Aligned_cols=67 Identities=15% Similarity=0.243 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHHHH
Q 023037 53 GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEE 128 (288)
Q Consensus 53 ~~kal~~l~~l~~~~g~~~~~l~~~~~~l~~~~~~v~ka~~~k~i~~ild~~~~~~~~~~~~~~~~~~~~l~~i~~ 128 (288)
+.+=+..|+.+|...|++++|+++++++...- + .+.......+..+++++....+ ...++..++-+|
T Consensus 503 k~~~y~~Li~LY~~kg~h~~AL~ll~~l~d~~-~-~~d~~~~~~~e~ii~YL~~l~~-------~~~~Li~~y~~w 569 (877)
T KOG2063|consen 503 KSKKYRELIELYATKGMHEKALQLLRDLVDED-S-DTDSFQLDGLEKIIEYLKKLGA-------ENLDLILEYADW 569 (877)
T ss_pred hcccHHHHHHHHHhccchHHHHHHHHHHhccc-c-ccccchhhhHHHHHHHHHHhcc-------cchhHHHHHhhh
Confidence 45667889999999999999999999987754 2 3334445555567777765422 112556666666
Done!