BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023038
(288 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225464178|ref|XP_002269817.1| PREDICTED: ribonuclease H2 subunit A isoform 1 [Vitis vinifera]
gi|296086584|emb|CBI32219.3| unnamed protein product [Vitis vinifera]
Length = 297
Score = 498 bits (1283), Expect = e-139, Method: Compositional matrix adjust.
Identities = 236/297 (79%), Positives = 265/297 (89%), Gaps = 9/297 (3%)
Query: 1 MGSEAALPKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEE 60
MGSE ALPKWAS PC+MGIDEAGRGPVLGPMVYGCLYC SY TL+TLNFADSKTLKEE
Sbjct: 1 MGSETALPKWASEPCMMGIDEAGRGPVLGPMVYGCLYCARSYHNTLSTLNFADSKTLKEE 60
Query: 61 KREELFEDLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGIL 120
KREELFE+LK ++S+GWAVD+IDP ELSAKML KNKINLNEISHDSAIGLITRVLN+G+L
Sbjct: 61 KREELFENLKADESIGWAVDVIDPWELSAKMLKKNKINLNEISHDSAIGLITRVLNMGVL 120
Query: 121 LTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 180
LTEVY+DTVGDAEKY+ KLS+RFP++KFVV+KKADSLYPVVSGASIVAKVTRDR LR W+
Sbjct: 121 LTEVYVDTVGDAEKYRIKLSERFPAVKFVVAKKADSLYPVVSGASIVAKVTRDRALRDWV 180
Query: 181 FEETAENMHRNFGSGYPGD---------HKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWE 231
ETAENMHRNFGSGYPGD HKH +FGFP+LVRFSWGTCT++ KDIVEVLWE
Sbjct: 181 LVETAENMHRNFGSGYPGDPVTKSWLQHHKHSVFGFPTLVRFSWGTCTAYSKDIVEVLWE 240
Query: 232 SDEMDEDVSSRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 288
+D+++ED S+ R+GKRQLKLS +GF SKR+SEEIESSGKGRCKF +ARKLEQLT F
Sbjct: 241 ADKVEEDGSTNRNGKRQLKLSSVGFIESKRKSEEIESSGKGRCKFFQARKLEQLTQF 297
>gi|255549406|ref|XP_002515756.1| ribonuclease hi large subunit, putative [Ricinus communis]
gi|223545084|gb|EEF46595.1| ribonuclease hi large subunit, putative [Ricinus communis]
Length = 299
Score = 483 bits (1242), Expect = e-134, Method: Compositional matrix adjust.
Identities = 232/299 (77%), Positives = 261/299 (87%), Gaps = 11/299 (3%)
Query: 1 MGSE--AALPKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLK 58
MGSE + LPKWAS PCIMGIDEAGRGPVLGPMVYGCLYC SY++TL+TL+FADSKTLK
Sbjct: 1 MGSETQSTLPKWASKPCIMGIDEAGRGPVLGPMVYGCLYCARSYERTLSTLSFADSKTLK 60
Query: 59 EEKREELFEDLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIG 118
E+KREELFE+LK N+S+GWAVD+IDPRELSAKML KNKINLNEISH+SAIGLITRVLN G
Sbjct: 61 EDKREELFENLKANESIGWAVDVIDPRELSAKMLQKNKINLNEISHESAIGLITRVLNEG 120
Query: 119 ILLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRG 178
+LLT+VYLDTVGDAEKY+ KLS+RFPSIKFVV+KKADSLYPVVSGASIVAKVTRDR LR
Sbjct: 121 VLLTQVYLDTVGDAEKYRIKLSERFPSIKFVVAKKADSLYPVVSGASIVAKVTRDRALRN 180
Query: 179 WIFEETAENMHRNFGSGYPGD---------HKHIIFGFPSLVRFSWGTCTSHFKDIVEVL 229
W+ EETAE + RNFGSGYPGD HKH +FGFP+LVRFSWGTC S++KD VEVL
Sbjct: 181 WVLEETAEGISRNFGSGYPGDPETKAWLKQHKHQVFGFPTLVRFSWGTCNSYYKDAVEVL 240
Query: 230 WESDEMDEDVSSRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 288
WESD+MDED S +GKRQLKLS G + K +SEEIESSGKGRCKF ++RKLEQL+HF
Sbjct: 241 WESDKMDEDDSVNSNGKRQLKLSSFGITIPKTKSEEIESSGKGRCKFFQSRKLEQLSHF 299
>gi|449468774|ref|XP_004152096.1| PREDICTED: ribonuclease H2 subunit A-like [Cucumis sativus]
gi|449529756|ref|XP_004171864.1| PREDICTED: ribonuclease H2 subunit A-like [Cucumis sativus]
Length = 297
Score = 483 bits (1242), Expect = e-134, Method: Compositional matrix adjust.
Identities = 225/297 (75%), Positives = 264/297 (88%), Gaps = 9/297 (3%)
Query: 1 MGSEAALPKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEE 60
M S+ +LPKW S PC+MGIDEAGRGPVLGPMVYGCLYC SY + L++LNFADSKTLKEE
Sbjct: 1 MSSQDSLPKWTSKPCVMGIDEAGRGPVLGPMVYGCLYCASSYLKQLSSLNFADSKTLKEE 60
Query: 61 KREELFEDLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGIL 120
KREELFEDLK N+S+GWAVD+IDPRELS+KMLNK KINLNEISHDSA+GL+T+VL++G+L
Sbjct: 61 KREELFEDLKANESIGWAVDVIDPRELSSKMLNKVKINLNEISHDSAMGLVTKVLSMGVL 120
Query: 121 LTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 180
LTEVY+DTVGD EKY+ KLS++FP+IKFVV+KKADSLYPVVSGASIVAKVTRDR LR W
Sbjct: 121 LTEVYVDTVGDPEKYRIKLSEKFPNIKFVVAKKADSLYPVVSGASIVAKVTRDRALREWA 180
Query: 181 FEETAENMHRNFGSGYPG---------DHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWE 231
EETAENMHRNFGSGYPG DHKH +FGFP+LVRFSWGTCTS+FKD+VEV WE
Sbjct: 181 LEETAENMHRNFGSGYPGDPTTKCWLEDHKHSVFGFPTLVRFSWGTCTSYFKDVVEVSWE 240
Query: 232 SDEMDEDVSSRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 288
SD++DED ++ SGK+QL+LS++G ++SKR+SEEIESSGKGRCKF +ARKLEQL+ F
Sbjct: 241 SDKVDEDGATGGSGKKQLRLSNVGITTSKRKSEEIESSGKGRCKFFQARKLEQLSRF 297
>gi|356536350|ref|XP_003536702.1| PREDICTED: ribonuclease H2 subunit A-like isoform 1 [Glycine max]
Length = 297
Score = 469 bits (1206), Expect = e-130, Method: Compositional matrix adjust.
Identities = 230/299 (76%), Positives = 258/299 (86%), Gaps = 13/299 (4%)
Query: 1 MGSEAALPKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEE 60
MGS+ LPKWAS PC+MGIDEAGRGPVLGPMVYGCLYC SY +TL+TL+FADSKTLKEE
Sbjct: 1 MGSKI-LPKWASKPCVMGIDEAGRGPVLGPMVYGCLYCSQSYLKTLSTLSFADSKTLKEE 59
Query: 61 KREELFEDLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGIL 120
KREELFE LK+NDS+GW VD+IDPRELSAKML KNKINLNEISH SA+GLI RVL +G+L
Sbjct: 60 KREELFETLKLNDSIGWDVDVIDPRELSAKMLKKNKINLNEISHSSAMGLIDRVLKMGVL 119
Query: 121 LTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 180
LTEVY+DTVGDA KY+ KLS FPSIKFVV+KKADSLYPVVSGASIVAKVTRDR LR W+
Sbjct: 120 LTEVYIDTVGDAGKYEMKLSNSFPSIKFVVAKKADSLYPVVSGASIVAKVTRDRALREWV 179
Query: 181 FEETAENMHRNFGSGYPG---------DHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWE 231
+ETAENM RNFGSGYPG DHKH IFGFPSLVRFSWGTC S+FKD EVLWE
Sbjct: 180 LDETAENMQRNFGSGYPGDPQTKSWLEDHKHHIFGFPSLVRFSWGTCNSYFKDAAEVLWE 239
Query: 232 SDEMDED--VSSRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 288
SD +DED S+ ++GKRQLKLS++GF++SK RSEEIESSGKGRC+F +ARKLE LT+F
Sbjct: 240 SDNLDEDGGGSNNKNGKRQLKLSNVGFTTSK-RSEEIESSGKGRCRFFQARKLEHLTYF 297
>gi|224097610|ref|XP_002311009.1| predicted protein [Populus trichocarpa]
gi|222850829|gb|EEE88376.1| predicted protein [Populus trichocarpa]
Length = 297
Score = 467 bits (1201), Expect = e-129, Method: Compositional matrix adjust.
Identities = 227/297 (76%), Positives = 257/297 (86%), Gaps = 9/297 (3%)
Query: 1 MGSEAALPKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEE 60
M SE+ LP WAS PCIMGIDEAGRGPVLGPMVYGCLYC SY++TL+TL FADSKTLKEE
Sbjct: 1 MESESILPDWASKPCIMGIDEAGRGPVLGPMVYGCLYCARSYEKTLSTLKFADSKTLKEE 60
Query: 61 KREELFEDLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGIL 120
KREELFE LK N+ +GWAVD+IDPRELSAKML K KINLNEISHDSA GL+TRVLN+G+L
Sbjct: 61 KREELFEKLKANELIGWAVDVIDPRELSAKMLKKIKINLNEISHDSASGLVTRVLNMGVL 120
Query: 121 LTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 180
LT+VY+DTVGD EKY+ KLS+RFPSIKFVV+KKADSLYPVVSGASIVAKVTRDR LR W+
Sbjct: 121 LTDVYVDTVGDPEKYRIKLSERFPSIKFVVAKKADSLYPVVSGASIVAKVTRDRALRDWV 180
Query: 181 FEETAENMHRNFGSGYPGD---------HKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWE 231
+ETAENM RNFGSGYPGD H+H +FGFPSLVRFSWGTCTS+ K++VEV+WE
Sbjct: 181 LDETAENMTRNFGSGYPGDPETKSWLEKHQHSVFGFPSLVRFSWGTCTSYSKNMVEVVWE 240
Query: 232 SDEMDEDVSSRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 288
SD+ +ED SS SGKRQLKLS G ++SKR+SEEIESSGK RCKF +ARKLEQL +F
Sbjct: 241 SDKTEEDGSSSSSGKRQLKLSSFGVTTSKRKSEEIESSGKSRCKFFQARKLEQLANF 297
>gi|18400719|ref|NP_565584.1| Ribonuclease H2 subunit A [Arabidopsis thaliana]
gi|49066054|sp|Q9SEZ6.2|RNH2A_ARATH RecName: Full=Ribonuclease H2 subunit A; Short=RNase H2 subunit A;
AltName: Full=Ribonuclease HI large subunit; Short=RNase
HI large subunit; AltName: Full=Ribonuclease HI subunit
A
gi|26450346|dbj|BAC42289.1| putative ribonuclease large subunit [Arabidopsis thaliana]
gi|28973385|gb|AAO64017.1| putative ribonuclease large subunit [Arabidopsis thaliana]
gi|330252563|gb|AEC07657.1| Ribonuclease H2 subunit A [Arabidopsis thaliana]
Length = 296
Score = 451 bits (1159), Expect = e-124, Method: Compositional matrix adjust.
Identities = 214/297 (72%), Positives = 252/297 (84%), Gaps = 10/297 (3%)
Query: 1 MGSEAALPKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEE 60
M SE P+WAS PC+MGIDEAGRGPVLGPMVYGC+YCP SYQ +LA+L+FADSKTLKEE
Sbjct: 1 MESECLTPEWASQPCLMGIDEAGRGPVLGPMVYGCMYCPISYQSSLASLHFADSKTLKEE 60
Query: 61 KREELFEDLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGIL 120
KREEL+E LK++ S+GWAVD+IDPRELSAKML KNK NLNEISH+SA+GLI RVL++G+L
Sbjct: 61 KREELYESLKLDKSLGWAVDVIDPRELSAKMLAKNKTNLNEISHNSAMGLIKRVLDMGVL 120
Query: 121 LTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 180
LTE YLDTVGD +KY+ KLS+RFPSIKFVVSKKADSL+P+VSGASIVAKVTRDR L+ W+
Sbjct: 121 LTEAYLDTVGDPDKYRIKLSERFPSIKFVVSKKADSLFPIVSGASIVAKVTRDRALKEWL 180
Query: 181 FEETAENMHRNFGSGYPGD---------HKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWE 231
EET E+++RNFGSGYPGD HKH +FGFPSLVRFSWGTCT+H K VEV WE
Sbjct: 181 VEETGEDINRNFGSGYPGDPETKAWLVQHKHSVFGFPSLVRFSWGTCTTHLKGEVEVAWE 240
Query: 232 SDEMDEDVSSRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 288
+DE +E+ + S KRQ KLS GF + ++RSEEIESSGKGRCKFL+ARK++QLT F
Sbjct: 241 ADE-NEESGNGSSSKRQAKLSSFGFKTCEKRSEEIESSGKGRCKFLQARKIQQLTQF 296
>gi|297825539|ref|XP_002880652.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297326491|gb|EFH56911.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 296
Score = 449 bits (1154), Expect = e-124, Method: Compositional matrix adjust.
Identities = 213/297 (71%), Positives = 250/297 (84%), Gaps = 10/297 (3%)
Query: 1 MGSEAALPKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEE 60
M S+ P+W+S PC+MGIDEAGRGPVLGPMVYGC+YCP SYQ +LA+L+FADSKTLKEE
Sbjct: 1 MESDCLTPEWSSQPCLMGIDEAGRGPVLGPMVYGCMYCPISYQSSLASLHFADSKTLKEE 60
Query: 61 KREELFEDLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGIL 120
KREEL+E+LK++ S+GWAVD+IDPRELSAKML KNK NLNEISH+SA+GLI RVL++G+L
Sbjct: 61 KREELYENLKLDKSLGWAVDVIDPRELSAKMLAKNKTNLNEISHNSAMGLIKRVLDMGVL 120
Query: 121 LTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 180
LTE YLDTVGD EKY+ KLS+RFPSIKFVVSKKADSL+P+VSGASIVAKVTRDR LR W+
Sbjct: 121 LTEAYLDTVGDPEKYRIKLSERFPSIKFVVSKKADSLFPIVSGASIVAKVTRDRALREWL 180
Query: 181 FEETAENMHRNFGSGYPGD---------HKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWE 231
EET E+++RNFGSGYPGD HKH +FGFPSLVRFSWGTCT+H K VEV WE
Sbjct: 181 VEETGEDINRNFGSGYPGDPETKAWLVQHKHSVFGFPSLVRFSWGTCTTHLKGEVEVAWE 240
Query: 232 SDEMDEDVSSRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 288
+DE +E + S KRQ KLS GF + +RSEEIESSGKGRCKF +ARK++QLT F
Sbjct: 241 ADETEES-GNGSSSKRQAKLSSFGFKTCDKRSEEIESSGKGRCKFFQARKIQQLTQF 296
>gi|225464176|ref|XP_002269852.1| PREDICTED: ribonuclease H2 subunit A isoform 2 [Vitis vinifera]
Length = 278
Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust.
Identities = 217/297 (73%), Positives = 246/297 (82%), Gaps = 28/297 (9%)
Query: 1 MGSEAALPKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEE 60
MGSE ALPKWAS PC+MGIDEAGRGPVLGPMVYGCLYC SY TL+TLNFADSKTLKEE
Sbjct: 1 MGSETALPKWASEPCMMGIDEAGRGPVLGPMVYGCLYCARSYHNTLSTLNFADSKTLKEE 60
Query: 61 KREELFEDLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGIL 120
KREELFE+LK ++S+GWAVD+IDP ELSAKML K VLN+G+L
Sbjct: 61 KREELFENLKADESIGWAVDVIDPWELSAKMLKK-------------------VLNMGVL 101
Query: 121 LTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 180
LTEVY+DTVGDAEKY+ KLS+RFP++KFVV+KKADSLYPVVSGASIVAKVTRDR LR W+
Sbjct: 102 LTEVYVDTVGDAEKYRIKLSERFPAVKFVVAKKADSLYPVVSGASIVAKVTRDRALRDWV 161
Query: 181 FEETAENMHRNFGSGYPGD---------HKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWE 231
ETAENMHRNFGSGYPGD HKH +FGFP+LVRFSWGTCT++ KDIVEVLWE
Sbjct: 162 LVETAENMHRNFGSGYPGDPVTKSWLQHHKHSVFGFPTLVRFSWGTCTAYSKDIVEVLWE 221
Query: 232 SDEMDEDVSSRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 288
+D+++ED S+ R+GKRQLKLS +GF SKR+SEEIESSGKGRCKF +ARKLEQLT F
Sbjct: 222 ADKVEEDGSTNRNGKRQLKLSSVGFIESKRKSEEIESSGKGRCKFFQARKLEQLTQF 278
>gi|125533439|gb|EAY79987.1| hypothetical protein OsI_35154 [Oryza sativa Indica Group]
Length = 298
Score = 435 bits (1118), Expect = e-119, Method: Compositional matrix adjust.
Identities = 205/296 (69%), Positives = 245/296 (82%), Gaps = 10/296 (3%)
Query: 3 SEAALPKWASN-PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEK 61
+ A P+WA+ PC+MGIDEAGRGPVLGPMVYGC+YC SYQ TLATL FADSKTLKEE+
Sbjct: 2 AAAVAPEWATKEPCLMGIDEAGRGPVLGPMVYGCMYCARSYQDTLATLKFADSKTLKEEQ 61
Query: 62 REELFEDLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILL 121
REELFE LK N S+GW VD+I P+ELSAKML ++K+NLNEISH+SA+GL+ R L++G+LL
Sbjct: 62 REELFESLKDNSSIGWEVDVICPKELSAKMLKRSKVNLNEISHNSAMGLVKRALDMGVLL 121
Query: 122 TEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIF 181
EVY+DTVGDAEKY+ KL+++FP IKFVV+KKADSL+PVVSGASIV+KVTRDR LR W+F
Sbjct: 122 AEVYIDTVGDAEKYRIKLTEKFPGIKFVVAKKADSLFPVVSGASIVSKVTRDRALRNWVF 181
Query: 182 EETAENMHRNFGSGYPG---------DHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWES 232
+ETA+NMH N GSGYPG DHKH IFGFPSLVRFSWGTCT F D +EV WES
Sbjct: 182 DETAQNMHMNTGSGYPGDPSTKQWLEDHKHPIFGFPSLVRFSWGTCTPFFNDAIEVTWES 241
Query: 233 DEMDEDVSSRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 288
+E++ED S S KRQ+KLS +GF+ KR+SEEI+SSGKGRCKF +ARKLE + F
Sbjct: 242 NELEEDAGSNGSVKRQVKLSSLGFTGFKRKSEEIDSSGKGRCKFFQARKLELVRKF 297
>gi|115484243|ref|NP_001065783.1| Os11g0153900 [Oryza sativa Japonica Group]
gi|62701661|gb|AAX92734.1| ribonuclease HII, putative [Oryza sativa Japonica Group]
gi|77548724|gb|ABA91521.1| ribonuclease HI large subunit, putative, expressed [Oryza sativa
Japonica Group]
gi|113644487|dbj|BAF27628.1| Os11g0153900 [Oryza sativa Japonica Group]
gi|125576251|gb|EAZ17473.1| hypothetical protein OsJ_33004 [Oryza sativa Japonica Group]
Length = 298
Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust.
Identities = 205/294 (69%), Positives = 244/294 (82%), Gaps = 10/294 (3%)
Query: 5 AALPKWASN-PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKRE 63
A P+WA+ PC+MGIDEAGRGPVLGPMVYGC+YC SYQ TLATL FADSKTLKEE+RE
Sbjct: 4 AVAPEWATKEPCLMGIDEAGRGPVLGPMVYGCMYCARSYQDTLATLKFADSKTLKEEQRE 63
Query: 64 ELFEDLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTE 123
ELFE LK N S+GW VD+I P+ELSAKML ++K+NLNEISH+SA+GL+ R L++G+LL E
Sbjct: 64 ELFESLKDNSSIGWEVDVICPKELSAKMLKRSKVNLNEISHNSAMGLVKRALDMGVLLAE 123
Query: 124 VYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEE 183
VY+DTVGDAEKY+ KL+++FP IKFVV+KKADSL+PVVSGASIV+KVTRDR LR W+F+E
Sbjct: 124 VYIDTVGDAEKYRIKLTEKFPGIKFVVAKKADSLFPVVSGASIVSKVTRDRALRNWVFDE 183
Query: 184 TAENMHRNFGSGYPG---------DHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWESDE 234
TA+NMH N GSGYPG DHKH IFGFPSLVRFSWGTCT F D +EV WES+E
Sbjct: 184 TAQNMHMNTGSGYPGDPSTKQWLEDHKHPIFGFPSLVRFSWGTCTPFFNDAIEVTWESNE 243
Query: 235 MDEDVSSRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 288
++ED S S KRQ+KLS +GF+ KR+SEEI+SSGKGRCKF +ARKLE + F
Sbjct: 244 LEEDAGSNGSVKRQVKLSSLGFTGFKRKSEEIDSSGKGRCKFFQARKLELVRKF 297
>gi|242094016|ref|XP_002437498.1| hypothetical protein SORBIDRAFT_10g028180 [Sorghum bicolor]
gi|241915721|gb|EER88865.1| hypothetical protein SORBIDRAFT_10g028180 [Sorghum bicolor]
Length = 297
Score = 433 bits (1114), Expect = e-119, Method: Compositional matrix adjust.
Identities = 205/294 (69%), Positives = 244/294 (82%), Gaps = 10/294 (3%)
Query: 5 AALPKWASN-PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKRE 63
A +P+WA+ PC+MGIDEAGRGPVLGPMVYGC+YC SY TLATL FADSKTLKEE+RE
Sbjct: 3 APVPEWATKEPCLMGIDEAGRGPVLGPMVYGCMYCARSYNNTLATLKFADSKTLKEEQRE 62
Query: 64 ELFEDLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTE 123
ELFE LKVN S+GW VD+I P++LSAKML K+K+NLNEISH+SA+GL+ ++L++G+LL E
Sbjct: 63 ELFESLKVNSSIGWEVDVICPKDLSAKMLRKSKVNLNEISHNSAMGLVRKLLDMGVLLAE 122
Query: 124 VYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEE 183
VY+DTVGD EKY+ KL+++FP IKFVV+KKADSLYPVVSGASIVAKVTRDR LR W+F+E
Sbjct: 123 VYIDTVGDPEKYRIKLTEKFPGIKFVVAKKADSLYPVVSGASIVAKVTRDRALRNWVFDE 182
Query: 184 TAENMHRNFGSGYPG---------DHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWESDE 234
TA NMH GSGYPG DHKH +FGFP+LVRFSWGTCT FKD VEV WESDE
Sbjct: 183 TALNMHMKTGSGYPGDTDTKQWLQDHKHPVFGFPTLVRFSWGTCTPFFKDAVEVTWESDE 242
Query: 235 MDEDVSSRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 288
+DED + S KRQ+KLS +GF+ KR++EEIESSGKGRCKF +ARKLE + F
Sbjct: 243 VDEDGTGNGSTKRQVKLSSLGFTGFKRKTEEIESSGKGRCKFFQARKLELVRKF 296
>gi|357160839|ref|XP_003578893.1| PREDICTED: ribonuclease H2 subunit A-like [Brachypodium distachyon]
Length = 299
Score = 431 bits (1107), Expect = e-118, Method: Compositional matrix adjust.
Identities = 201/290 (69%), Positives = 243/290 (83%), Gaps = 10/290 (3%)
Query: 9 KWASN-PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFE 67
+WA+ PCIMGIDEAGRGPVLGPMVYGC++C SY TLATL+FADSKTLKEE+REELFE
Sbjct: 9 EWATKEPCIMGIDEAGRGPVLGPMVYGCMFCARSYHDTLATLSFADSKTLKEEQREELFE 68
Query: 68 DLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLD 127
LK N ++GW VD+I P+ELSAKML + K+NLNEISH+SA+GL+ + L++G+LLT+VY+D
Sbjct: 69 TLKTNSAIGWEVDVICPKELSAKMLKRTKVNLNEISHNSAMGLVKKALSMGVLLTDVYID 128
Query: 128 TVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAEN 187
TVGD EKY+ KL+++FP I FVV+KKADSLYPVVSGASIVAKVTRDR LR W+F+ETA+N
Sbjct: 129 TVGDPEKYRVKLTEKFPGITFVVAKKADSLYPVVSGASIVAKVTRDRALRNWVFDETAQN 188
Query: 188 MHRNFGSGYPG---------DHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWESDEMDED 238
MH + GSGYPG DHKH +FGFP+LVRFSWGTCTS+FK VEV WESDE+DED
Sbjct: 189 MHMDTGSGYPGDPNTIQWLKDHKHPVFGFPTLVRFSWGTCTSYFKTGVEVTWESDELDED 248
Query: 239 VSSRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 288
+S S KRQ++LS +GF+ KR+SEEIESSGKGRCKF +ARKLE + F
Sbjct: 249 AASNGSAKRQVRLSSLGFTGFKRKSEEIESSGKGRCKFFQARKLELVRKF 298
>gi|21593541|gb|AAM65508.1| putative ribonuclease large subunit [Arabidopsis thaliana]
Length = 280
Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust.
Identities = 204/281 (72%), Positives = 241/281 (85%), Gaps = 10/281 (3%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVG 76
MGIDEAGRGPVLGPMVYGC+YCP SYQ +LA+L+FADSKTLKEEKRE+L+E LK++ S+G
Sbjct: 1 MGIDEAGRGPVLGPMVYGCMYCPISYQSSLASLHFADSKTLKEEKREDLYESLKLDKSLG 60
Query: 77 WAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQ 136
WAVD+IDPRELSAKML KNK NLNEISH+SA+GLI RVL++G+LLTE YLDTVGD +KY+
Sbjct: 61 WAVDVIDPRELSAKMLAKNKTNLNEISHNSAMGLIKRVLDMGVLLTEAYLDTVGDPDKYK 120
Query: 137 AKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGY 196
KLS+RFPSIKFVVSKKADSL+P+VSGASIVAKVTRDR L+ W+ EET E+++RNFGSGY
Sbjct: 121 IKLSERFPSIKFVVSKKADSLFPIVSGASIVAKVTRDRALKEWLVEETGEDINRNFGSGY 180
Query: 197 PGD---------HKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWESDEMDEDVSSRRSGKR 247
PGD HKH +FGFPSLVRFSWGTCT+H K VEV WE+DE +E+ + S KR
Sbjct: 181 PGDPETKAWLVQHKHSVFGFPSLVRFSWGTCTTHLKGEVEVAWEADE-NEESGNGSSSKR 239
Query: 248 QLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 288
Q KLS GF + ++RSEEIESSGKGRCKFL+ARK++QLT F
Sbjct: 240 QAKLSSFGFKTCEKRSEEIESSGKGRCKFLQARKIQQLTQF 280
>gi|242082852|ref|XP_002441851.1| hypothetical protein SORBIDRAFT_08g003480 [Sorghum bicolor]
gi|241942544|gb|EES15689.1| hypothetical protein SORBIDRAFT_08g003480 [Sorghum bicolor]
Length = 297
Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust.
Identities = 203/294 (69%), Positives = 243/294 (82%), Gaps = 10/294 (3%)
Query: 5 AALPKWASN-PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKRE 63
A +P+WA+ PC+MGIDEAGRGPVLGPMVYGC+YC SY TL+TL FADSKTLKEE+RE
Sbjct: 3 APVPEWATKEPCLMGIDEAGRGPVLGPMVYGCMYCARSYNNTLSTLKFADSKTLKEEQRE 62
Query: 64 ELFEDLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTE 123
ELFE LKVN S+GW VD+I P++LSAKML K+K+NLNEISH+SA+GL+ +VL++GILL E
Sbjct: 63 ELFESLKVNSSIGWEVDVICPKDLSAKMLKKSKVNLNEISHNSAMGLVRKVLDMGILLAE 122
Query: 124 VYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEE 183
VY+DTVGD EKY+ KL+++FP IKFVV+KKADSLYPVVSGASIVAKVTRDR LR W+F+E
Sbjct: 123 VYIDTVGDPEKYRIKLTEKFPGIKFVVAKKADSLYPVVSGASIVAKVTRDRALRNWVFDE 182
Query: 184 TAENMHRNFGSGYPG---------DHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWESDE 234
TA ++H GSGYPG DHKH +FGFP+LVRFSWGTC FKD VEV WESDE
Sbjct: 183 TALSLHMKTGSGYPGDPDTKQWLEDHKHPVFGFPTLVRFSWGTCKPFFKDAVEVTWESDE 242
Query: 235 MDEDVSSRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 288
+DED + S KRQ+KLS +GF+ KR++EEIESSGKGRCKF +ARKLE + F
Sbjct: 243 VDEDGTDNGSTKRQVKLSSLGFTGFKRKTEEIESSGKGRCKFFQARKLELVRKF 296
>gi|356536352|ref|XP_003536703.1| PREDICTED: ribonuclease H2 subunit A-like isoform 2 [Glycine max]
Length = 278
Score = 425 bits (1093), Expect = e-116, Method: Compositional matrix adjust.
Identities = 214/299 (71%), Positives = 241/299 (80%), Gaps = 32/299 (10%)
Query: 1 MGSEAALPKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEE 60
MGS+ LPKWAS PC+MGIDEAGRGPVLGPMVYGCLYC SY +TL+TL+FADSKTLKEE
Sbjct: 1 MGSKI-LPKWASKPCVMGIDEAGRGPVLGPMVYGCLYCSQSYLKTLSTLSFADSKTLKEE 59
Query: 61 KREELFEDLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGIL 120
KREELFE LK+NDS+GW VD+IDPRELSAKML K VL +G+L
Sbjct: 60 KREELFETLKLNDSIGWDVDVIDPRELSAKMLKK-------------------VLKMGVL 100
Query: 121 LTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 180
LTEVY+DTVGDA KY+ KLS FPSIKFVV+KKADSLYPVVSGASIVAKVTRDR LR W+
Sbjct: 101 LTEVYIDTVGDAGKYEMKLSNSFPSIKFVVAKKADSLYPVVSGASIVAKVTRDRALREWV 160
Query: 181 FEETAENMHRNFGSGYPG---------DHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWE 231
+ETAENM RNFGSGYPG DHKH IFGFPSLVRFSWGTC S+FKD EVLWE
Sbjct: 161 LDETAENMQRNFGSGYPGDPQTKSWLEDHKHHIFGFPSLVRFSWGTCNSYFKDAAEVLWE 220
Query: 232 SDEMDED--VSSRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 288
SD +DED S+ ++GKRQLKLS++GF++SK RSEEIESSGKGRC+F +ARKLE LT+F
Sbjct: 221 SDNLDEDGGGSNNKNGKRQLKLSNVGFTTSK-RSEEIESSGKGRCRFFQARKLEHLTYF 278
>gi|413916142|gb|AFW56074.1| hypothetical protein ZEAMMB73_446071 [Zea mays]
Length = 297
Score = 422 bits (1086), Expect = e-116, Method: Compositional matrix adjust.
Identities = 196/294 (66%), Positives = 241/294 (81%), Gaps = 10/294 (3%)
Query: 5 AALPKWASN-PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKRE 63
A +P+WA+ PC+MGIDEAGRGPVLGPMVYGC+YC CSY TLATL FADSKTLKEE+RE
Sbjct: 3 ALVPEWATKEPCLMGIDEAGRGPVLGPMVYGCVYCACSYNNTLATLKFADSKTLKEEQRE 62
Query: 64 ELFEDLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTE 123
ELFE LK N S+GW VD+I P++LSAKML ++K+NLNEISH+SA+GL+ +VL++G+LL E
Sbjct: 63 ELFESLKANSSIGWEVDVICPKDLSAKMLKRSKVNLNEISHNSAMGLVRKVLDMGVLLAE 122
Query: 124 VYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEE 183
VY+DTVGD EKY+ KL+++FP +KFVV+KKADSLYPVVSGASI AKVTRDR LR W+F+E
Sbjct: 123 VYVDTVGDPEKYRTKLTEKFPGVKFVVAKKADSLYPVVSGASIAAKVTRDRALRNWVFDE 182
Query: 184 TAENMHRNFGSGYPG---------DHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWESDE 234
TA ++H GSGYPG DHKH +FGFP+LVRFSWGTC FKD V+V WESDE
Sbjct: 183 TALSLHMRTGSGYPGDPDTKQWLEDHKHPVFGFPTLVRFSWGTCKPFFKDAVDVTWESDE 242
Query: 235 MDEDVSSRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 288
+DE+ + KRQ+KLS +GF+ KR++E+IESSGKGRCKF +ARKLE + F
Sbjct: 243 VDEEGTDNGGAKRQVKLSSLGFTGFKRKTEDIESSGKGRCKFFQARKLELVRKF 296
>gi|145329613|ref|NP_001077956.1| Ribonuclease H2 subunit A [Arabidopsis thaliana]
gi|330252564|gb|AEC07658.1| Ribonuclease H2 subunit A [Arabidopsis thaliana]
Length = 277
Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust.
Identities = 199/297 (67%), Positives = 235/297 (79%), Gaps = 29/297 (9%)
Query: 1 MGSEAALPKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEE 60
M SE P+WAS PC+MGIDEAGRGPVLGPMVYGC+YCP SYQ +LA+L+FADSKTLKEE
Sbjct: 1 MESECLTPEWASQPCLMGIDEAGRGPVLGPMVYGCMYCPISYQSSLASLHFADSKTLKEE 60
Query: 61 KREELFEDLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGIL 120
KREEL+E LK++ S+GWAVD+IDPRELSAKML K VL++G+L
Sbjct: 61 KREELYESLKLDKSLGWAVDVIDPRELSAKMLAK-------------------VLDMGVL 101
Query: 121 LTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 180
LTE YLDTVGD +KY+ KLS+RFPSIKFVVSKKADSL+P+VSGASIVAKVTRDR L+ W+
Sbjct: 102 LTEAYLDTVGDPDKYRIKLSERFPSIKFVVSKKADSLFPIVSGASIVAKVTRDRALKEWL 161
Query: 181 FEETAENMHRNFGSGYPGD---------HKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWE 231
EET E+++RNFGSGYPGD HKH +FGFPSLVRFSWGTCT+H K VEV WE
Sbjct: 162 VEETGEDINRNFGSGYPGDPETKAWLVQHKHSVFGFPSLVRFSWGTCTTHLKGEVEVAWE 221
Query: 232 SDEMDEDVSSRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 288
+DE +E+ + S KRQ KLS GF + ++RSEEIESSGKGRCKFL+ARK++QLT F
Sbjct: 222 ADE-NEESGNGSSSKRQAKLSSFGFKTCEKRSEEIESSGKGRCKFLQARKIQQLTQF 277
>gi|294464821|gb|ADE77916.1| unknown [Picea sitchensis]
Length = 293
Score = 406 bits (1043), Expect = e-111, Method: Compositional matrix adjust.
Identities = 201/294 (68%), Positives = 235/294 (79%), Gaps = 14/294 (4%)
Query: 1 MGSEAALPKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEE 60
MGS LP WAS PCIMGIDEAGRGPVLGPMVYGCLYC SYQ+TLATL FADSKTLKEE
Sbjct: 1 MGSNP-LPDWASEPCIMGIDEAGRGPVLGPMVYGCLYCSASYQETLATLKFADSKTLKEE 59
Query: 61 KREELFEDLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGIL 120
KREELFE LK + S+GWAVDIIDPRELSAKML + K+NLN ISHD+A+GL+ VL+ GIL
Sbjct: 60 KREELFESLKADASLGWAVDIIDPRELSAKMLQRIKVNLNTISHDAAMGLVNTVLSKGIL 119
Query: 121 LTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 180
L+EVY+DTVGDA+KY+ KL ++FP IKFVVSKKADSLYP+VSGASIVAKVTRD LRGW+
Sbjct: 120 LSEVYVDTVGDADKYRIKLEEKFPGIKFVVSKKADSLYPIVSGASIVAKVTRDNALRGWV 179
Query: 181 FEETAENMHRNFGSGYPGD---------HKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWE 231
+ETAE + RNFGSGYPGD +KH +FGFP+LVRFSW TC S+ V V+WE
Sbjct: 180 LDETAEGISRNFGSGYPGDPETKAWLEENKHPVFGFPTLVRFSWATCNSYTAKGVTVIWE 239
Query: 232 SDEMDEDVSSRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQL 285
DE D+ S+ K+QL L+ F + KR+SEE+ESSGKGR KF +RKL+Q+
Sbjct: 240 PDEEDK-ASNGGDNKKQLTLN---FPTVKRKSEELESSGKGRFKFFSSRKLQQV 289
>gi|226500696|ref|NP_001152248.1| ribonuclease HI large subunit [Zea mays]
gi|195654267|gb|ACG46601.1| ribonuclease HI large subunit [Zea mays]
Length = 284
Score = 357 bits (915), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 177/295 (60%), Positives = 222/295 (75%), Gaps = 25/295 (8%)
Query: 5 AALPKWASN-PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKRE 63
A +P+WA+ PC+MGIDEAGRGPVLGPMVYGC+YC SY TLATL FADSKTLKEE+RE
Sbjct: 3 ALVPEWATKEPCLMGIDEAGRGPVLGPMVYGCMYCAYSYNNTLATLKFADSKTLKEEQRE 62
Query: 64 ELFEDLKVNDSVGWAVDIIDPRELSAKMLNK-NKINLNEISHDSAIGLITRVLNIGILLT 122
ELFE LKVN S+ W VD+I P+++SAKML K +K+NLNEISH+SA+GL+ +VL +G+LL
Sbjct: 63 ELFESLKVNSSIRWEVDVICPKDISAKMLKKKSKVNLNEISHNSAMGLVRKVLRMGVLLA 122
Query: 123 EVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFE 182
EVY+DTVGD EKY+ KL+++F IKFVV+KKADSLYPV+SGASIVAKVTRDR LR W+F+
Sbjct: 123 EVYVDTVGDPEKYRTKLTEKFIGIKFVVAKKADSLYPVISGASIVAKVTRDRALRNWVFD 182
Query: 183 ETAENMHRNFGSGYPG---------DHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWESD 233
ETA ++H SGY G DHKH++FGF FKD V+V WESD
Sbjct: 183 ETALSLHMRTRSGYLGDPDTKRWLEDHKHLVFGF--------------FKDAVDVTWESD 228
Query: 234 EMDEDVSSRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 288
++D++ KRQ+KL +GF+ KR++EEIES+GKG CKF + KLE + F
Sbjct: 229 KVDQEEIDSGDTKRQVKLLSLGFTGFKRKTEEIESTGKGCCKFFQVHKLELVRKF 283
>gi|255640332|gb|ACU20454.1| unknown [Glycine max]
Length = 219
Score = 355 bits (910), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 173/220 (78%), Positives = 189/220 (85%), Gaps = 10/220 (4%)
Query: 1 MGSEAALPKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEE 60
MGS+ LPKWAS PC+MGIDEAGRGPVLGPMVYGCLYC SY +TL+TL+FADSKTLKEE
Sbjct: 1 MGSKI-LPKWASKPCVMGIDEAGRGPVLGPMVYGCLYCSQSYLKTLSTLSFADSKTLKEE 59
Query: 61 KREELFEDLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGIL 120
KREELFE LK+NDS+GW VD+IDPRELSAKML KNKINLNEISH SA+GLI RVL +G+L
Sbjct: 60 KREELFETLKLNDSIGWDVDVIDPRELSAKMLKKNKINLNEISHSSAMGLIDRVLKMGVL 119
Query: 121 LTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 180
LTEVY+DTVGDA KY+ KLS FPSIKFVV+KKADSLYPVVSGASIVAKVTRDR R W+
Sbjct: 120 LTEVYIDTVGDAGKYEMKLSNSFPSIKFVVAKKADSLYPVVSGASIVAKVTRDRASREWV 179
Query: 181 FEETAENMHRNFGSGYPG---------DHKHIIFGFPSLV 211
+ETAENM RNFGSGYPG DHKH IFGFPSLV
Sbjct: 180 LDETAENMQRNFGSGYPGDPQTKSWLEDHKHHIFGFPSLV 219
>gi|168019116|ref|XP_001762091.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686808|gb|EDQ73195.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 307
Score = 313 bits (803), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 158/296 (53%), Positives = 199/296 (67%), Gaps = 25/296 (8%)
Query: 1 MGSEAALPKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEE 60
M + +A P W PC++GIDEAGRGPVLGPMVYGC YCP ++ ++TL FADSK L E
Sbjct: 1 MVTGSASPSWKEKPCLLGIDEAGRGPVLGPMVYGCAYCPIDQKERISTLKFADSKALTES 60
Query: 61 KREELFEDLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGIL 120
KREEL+E+LK +D +GWAVD+IDP++LSAKML + K+NLN IS +SA+GLI L++G+
Sbjct: 61 KREELYENLKADDLMGWAVDVIDPKDLSAKMLRRAKVNLNTISFESAMGLIRNTLDLGVF 120
Query: 121 LTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 180
LTEV++DTVGD KYQ L+ +FP I+F VSKKADSL+P+VS ASIVAKVTRDR LR W+
Sbjct: 121 LTEVFVDTVGDPGKYQDMLTTKFPGIRFTVSKKADSLFPIVSAASIVAKVTRDRALRDWV 180
Query: 181 FEETAENMHRNFGSGYPG---------DHKHIIFGFPSLVRFSWGTCTSHF-KDIVEVLW 230
+ET + R FGSGYPG DH +FGFPSLVRFSW TC + K V V W
Sbjct: 181 VDETGREVTRGFGSGYPGDPETKTWLEDHVDPVFGFPSLVRFSWATCKPYLTKGGVFVYW 240
Query: 231 ESDEMDEDVSSRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLT 286
ES + DED ++ K +G S R R + E R+L+Q T
Sbjct: 241 ESADDDEDEVEKKH-----KPKHVGEQSCARM----------RHSYFERRQLQQRT 281
>gi|356521108|ref|XP_003529200.1| PREDICTED: LOW QUALITY PROTEIN: ribonuclease H2 subunit A-like
[Glycine max]
Length = 221
Score = 266 bits (680), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 148/222 (66%), Positives = 168/222 (75%), Gaps = 12/222 (5%)
Query: 1 MGSEAALPKWASNPCIMGIDEAGRGPVL--GPMVYGCLYCPCSYQQTLATLNFADSKTLK 58
MGS+ LPKWAS PC+MGIDEAGRGPV+ PMVY LY SY T + L+FADSKTLK
Sbjct: 1 MGSKI-LPKWASKPCVMGIDEAGRGPVIISRPMVYDFLYRAXSYLMTFSMLSFADSKTLK 59
Query: 59 EEKREELFEDLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIG 118
EEK+E L+E LK+NDS+G VD+IDPRELS KML KNKINLNEI H SA+ LI +VL +
Sbjct: 60 EEKKEXLYETLKLNDSIGXDVDVIDPRELSTKMLKKNKINLNEILHSSAMSLIDKVLKME 119
Query: 119 ILLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRG 178
+LLTEVY+DT GDA KY+ KL FPSIKFVV+KKADSL P+VSGASIVAKVTRD LR
Sbjct: 120 VLLTEVYIDTFGDARKYEIKLPNSFPSIKFVVAKKADSLXPIVSGASIVAKVTRDHALRE 179
Query: 179 WIFEETAENMHRNFGSGYPG---------DHKHIIFGFPSLV 211
W+ +ET ENM R FG Y G DHKH IFGFPSLV
Sbjct: 180 WVLDETVENMQRFFGFAYLGDPQTKSWLEDHKHHIFGFPSLV 221
>gi|224110154|ref|XP_002315431.1| predicted protein [Populus trichocarpa]
gi|222864471|gb|EEF01602.1| predicted protein [Populus trichocarpa]
Length = 305
Score = 263 bits (671), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 157/319 (49%), Positives = 196/319 (61%), Gaps = 61/319 (19%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYC--PCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
MGIDEAGR P L +C C+ + L+ + L+ + R + FE+LK N+S
Sbjct: 1 MGIDEAGRVPDL--------WCTDACTVLAHMRRLSLPSA--LQRKGRSD-FENLKANES 49
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
+GWAVD+ DPRELSAKML KNKINLNEISHDSA GL+ RVLN+G+LLTEV +DTVGD EK
Sbjct: 50 IGWAVDVNDPRELSAKMLKKNKINLNEISHDSASGLVNRVLNMGVLLTEVCVDTVGDPEK 109
Query: 135 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRD--------------------- 173
Y+ KLS+ FP +KFVV+KKA SLYPVVSGASIVAKV
Sbjct: 110 YRIKLSESFPFVKFVVAKKAGSLYPVVSGASIVAKVVISHPFDSLNFRLQEIGPCEDGYL 169
Query: 174 -RTLRGWI---------FEETAENMHRNFGSGYPGDHKHIIFGFPSLVRFSWGTCTSHFK 223
+ L+ W+ F + + G H+H +FGFP+LVRFSWGTCT + K
Sbjct: 170 MKQLKTWLGILDLDTLEFYCCVQILKLKLGW---NKHEHSVFGFPTLVRFSWGTCTPYSK 226
Query: 224 DIVEVL--------------WESDEMDEDVSSRRSGKRQLKLSDIGFSSSKRRSEEIESS 269
++V++L ESD++ ED SS S KRQLK S G ++SKR+SEE ESS
Sbjct: 227 NMVDLLNVSCLATFFFLFLSRESDKLVEDGSSSSSRKRQLKSSSFGVTTSKRKSEETESS 286
Query: 270 GKGRCKFLEARKLEQLTHF 288
GK RCKF RKLEQL +F
Sbjct: 287 GKSRCKFFHTRKLEQLANF 305
>gi|302800969|ref|XP_002982241.1| hypothetical protein SELMODRAFT_233940 [Selaginella moellendorffii]
gi|300149833|gb|EFJ16486.1| hypothetical protein SELMODRAFT_233940 [Selaginella moellendorffii]
Length = 261
Score = 259 bits (662), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 141/290 (48%), Positives = 179/290 (61%), Gaps = 49/290 (16%)
Query: 10 WASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL 69
W S PC MGIDEAGRGPVLGPMVYGC YC +Y++ LA+L FA + F+D+
Sbjct: 5 WCSTPCAMGIDEAGRGPVLGPMVYGCAYCAVAYKEELASLKFAGMR----------FQDI 54
Query: 70 ---KVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYL 126
K + REL ++ K +LN+IS+DSAIGLI VL+ G+LL+EVY+
Sbjct: 55 DRGKTRKAF---------RELEGGPIDGVKRSLNDISYDSAIGLIKLVLSRGVLLSEVYV 105
Query: 127 DTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAE 186
DTVGDAEKYQA+LS+ FP IKF V+KKADSL+P+VS ASI AKVTRD+ L+ W+ +E
Sbjct: 106 DTVGDAEKYQARLSELFPHIKFTVAKKADSLFPIVSAASIAAKVTRDQALKSWVMDEAGC 165
Query: 187 NMHRNFGSGYPGD---------HKHIIFGFPSLVRFSWGTCTSHFKD-IVEVLWESDEMD 236
+ RNFGSGYPGD H +FGFPSLVRFSW TC + V V WE+DE D
Sbjct: 166 AISRNFGSGYPGDPETKAWLEQHMDDVFGFPSLVRFSWATCKPLIAEGGVHVYWEADEDD 225
Query: 237 EDVSSRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLT 286
+ ++S RS + ESSG R F +R+L+Q+T
Sbjct: 226 DTALVKKS-----------------RSAQTESSGALRHSFFRSRQLQQVT 258
>gi|384253032|gb|EIE26507.1| ribonuclease HII [Coccomyxa subellipsoidea C-169]
Length = 337
Score = 259 bits (661), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 140/289 (48%), Positives = 194/289 (67%), Gaps = 22/289 (7%)
Query: 10 WASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL 69
W + C MGIDEAGRGPVLGPMVYGC Y S + L+ +FADSKTLKEE+RE LF+++
Sbjct: 61 WFAQDCFMGIDEAGRGPVLGPMVYGCAYSAMSQMEALSQRSFADSKTLKEERRESLFQEI 120
Query: 70 KVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 129
K + S+G AVDI+D R +SA+ML+ + +LN +++++ LI VL +G+ L EVY+DTV
Sbjct: 121 KEDASIGTAVDILDARTISAQMLHSQRESLNVLANNATFRLIEGVLELGVRLREVYVDTV 180
Query: 130 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH 189
G+A ++QA+L++RFP I+F+V KADSLYP+VS ASIVAKVTRDR ++ + E E +
Sbjct: 181 GEASRHQARLTERFPGIRFIVCPKADSLYPIVSAASIVAKVTRDRLVKDFSIAEKVE-VG 239
Query: 190 RNFGSGYPGD-------HKHI--IFGFPSLVRFSWGTCTSHFKD-IVEVLWESDEMDEDV 239
R GSGYPGD +HI +FGFPS+VRFSW T + + V V WE DE ++D
Sbjct: 240 RQTGSGYPGDPDTKAWLQEHIDPVFGFPSIVRFSWSTASKILETGAVPVQWECDE-EQDG 298
Query: 240 SSRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 288
S G++ L F + R++ S+G GR F A KL+++ +F
Sbjct: 299 S---QGQQVL-----AFGNKPARAQ--VSTGVGRHAFFRAHKLQRVANF 337
>gi|442754225|gb|JAA69272.1| Putative ribonuclease hi [Ixodes ricinus]
Length = 357
Score = 251 bits (642), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 128/242 (52%), Positives = 160/242 (66%), Gaps = 12/242 (4%)
Query: 4 EAALPKWA-SNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKR 62
++A+P A SNPC++G+DEAGRGPVLGPMVYG YCP +++ L L FADSKTL EEKR
Sbjct: 17 KSAVPDVAKSNPCMLGVDEAGRGPVLGPMVYGIAYCPVEFEEDLKRLGFADSKTLTEEKR 76
Query: 63 EELFEDLKVN-DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILL 121
EEL ++ + +S+GW V++I P + MLN +K +LN ISHDSAI LI + LN G+ +
Sbjct: 77 EELVGVMEQHSESLGWMVEVISPTVICNHMLNMSKYSLNAISHDSAISLIKQALNDGVCV 136
Query: 122 TEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIF 181
TEVY+DTVG EKYQAKL FP IK V+KKAD +P+VS ASI AKV RDR ++ W F
Sbjct: 137 TEVYVDTVGPPEKYQAKLQDTFPDIKITVAKKADPTFPIVSAASICAKVARDRAIQTWRF 196
Query: 182 EETAENMHRNFGSGYPGD---------HKHIIFGFPSLVRFSWGTCTSHFKD-IVEVLWE 231
E +GSGYP D H +FGFPSLVRFSW T +D V W+
Sbjct: 197 PEGLNFNPEEYGSGYPNDPATKKFLAAHVDNVFGFPSLVRFSWSTAEKLLEDNAATVSWD 256
Query: 232 SD 233
D
Sbjct: 257 ED 258
>gi|432844392|ref|XP_004065747.1| PREDICTED: ribonuclease H2 subunit A-like [Oryzias latipes]
Length = 306
Score = 249 bits (637), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 131/283 (46%), Positives = 175/283 (61%), Gaps = 18/283 (6%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL-KVND 73
C +GIDEAGRGPVLGPMVYG +CP S +Q L L ADSKTL EE+RE LF +L +
Sbjct: 29 CCLGIDEAGRGPVLGPMVYGICFCPVSKKQELKDLKVADSKTLTEEERERLFHNLDEAKS 88
Query: 74 SVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAE 133
VGWA+ ++ P +S ML + K NLN +SHD+AIGLI L+ G+ L E+Y+DTVG AE
Sbjct: 89 YVGWALHVLSPNTISTSMLQRTKYNLNALSHDTAIGLIQYALDSGVQLKEIYVDTVGPAE 148
Query: 134 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG 193
KY+ KLSQRFP I+ V KADSL+PVVS ASI AKV RDR ++GW F E ++ ++G
Sbjct: 149 KYEEKLSQRFPGIEVTVRPKADSLFPVVSAASICAKVARDRVVKGWKFAEDLGDVDADYG 208
Query: 194 SGYPGDHK---------HIIFGFPSLVRFSWGTCTSHFKD-IVEVLWESDEMDEDVSSRR 243
SGYP D K +FG+P VRFSW T + V V W+ DE D + +++R
Sbjct: 209 SGYPNDPKTKAWLLKYLDPVFGYPQFVRFSWSTAQTLLDSKAVTVHWDDDEEDGEKAAKR 268
Query: 244 SGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLT 286
+ + + F S+ S++ + +F R+L L+
Sbjct: 269 LNNKSM----LSFFSASAGSDD---QSRQTHRFFTDRRLRGLS 304
>gi|443699951|gb|ELT99170.1| hypothetical protein CAPTEDRAFT_183401 [Capitella teleta]
Length = 317
Score = 249 bits (637), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 124/243 (51%), Positives = 165/243 (67%), Gaps = 13/243 (5%)
Query: 12 SNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKV 71
+ PC +GIDEAGRGPVLGPMVYG +CP + ++ L + FADSKTL EEKRE LF+ ++
Sbjct: 39 TEPCCLGIDEAGRGPVLGPMVYGTCFCPIADKERLKEMGFADSKTLTEEKRENLFQKIQA 98
Query: 72 N--DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 129
D +GWAV I+ P ++S ML ++K NLNE+SHD+AIGLI + L+ G+ + EV++DTV
Sbjct: 99 AEADLIGWAVHILSPNQISNSMLRRSKYNLNELSHDTAIGLIQKALDSGVNVDEVFVDTV 158
Query: 130 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH 189
G EKYQAKL + FP +K V+KKAD+ YP+VS ASI AKV+RD ++ W F E +
Sbjct: 159 GMPEKYQAKLERIFPELKITVAKKADATYPIVSAASICAKVSRDHAVKSWNFIEGRDYAG 218
Query: 190 RNFGSGYPGDHK---------HIIFGFPSLVRFSWGTCTSHF-KDIVEVLWE-SDEMDED 238
+++GSGYPGD + +FGFP VRFSW T ++ V V WE DEM +D
Sbjct: 219 KSYGSGYPGDSETKNFLSESMDPVFGFPQFVRFSWSTASNILDAKAVTVEWEDDDEMPDD 278
Query: 239 VSS 241
V S
Sbjct: 279 VKS 281
>gi|346466461|gb|AEO33075.1| hypothetical protein [Amblyomma maculatum]
Length = 339
Score = 248 bits (632), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 126/250 (50%), Positives = 165/250 (66%), Gaps = 13/250 (5%)
Query: 12 SNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKV 71
+ PCI+G+DEAGRGPVLGPMVYG +YCP S + L L FADSKTL EEKREEL ++
Sbjct: 60 TEPCILGVDEAGRGPVLGPMVYGIVYCPISSKDQLKELGFADSKTLTEEKREELLSVIER 119
Query: 72 NDS-VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG 130
N S +G+ V++I P +S +ML+ +K NLN ISHDSAIGLI R G+ + EVY+DTVG
Sbjct: 120 NSSFLGFMVELISPVVISERMLHVSKYNLNSISHDSAIGLIRRAQEEGVNVAEVYVDTVG 179
Query: 131 DAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHR 190
EKYQ KL FP IK V+KKAD+ YP+VS ASI AKV RDR +R W F E +
Sbjct: 180 PPEKYQKKLEDCFPGIKVTVAKKADATYPIVSAASICAKVARDRAIRSWQFPEGIDVKPE 239
Query: 191 NFGSGYPGD---------HKHIIFGFPSLVRFSWGTCTSHFKD-IVEVLWESDEMDEDVS 240
++GSGYP D + ++FGFP +VRFSW T +D ++W DE DE+ +
Sbjct: 240 DYGSGYPNDPVTKKFLAENTDLVFGFPGIVRFSWSTAEKLLEDHAAPIVW--DEEDEEGA 297
Query: 241 SRRSGKRQLK 250
+++G ++
Sbjct: 298 GKQNGMASIQ 307
>gi|327281022|ref|XP_003225249.1| PREDICTED: ribonuclease H2 subunit A-like [Anolis carolinensis]
Length = 300
Score = 246 bits (629), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 132/286 (46%), Positives = 171/286 (59%), Gaps = 24/286 (8%)
Query: 12 SNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL-K 70
+ PC +GIDEAGRGPVLGPMVYG YCP + Q L + ADSKTL E +RE+LFE L
Sbjct: 26 TQPCCLGIDEAGRGPVLGPMVYGICYCPVARQGDLEAIKVADSKTLTEAQREQLFEKLDA 85
Query: 71 VNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG 130
D VGWA+ I+ P +S M + K NLN +SHD+AIGLI L+ G+ + EV++DTVG
Sbjct: 86 AKDFVGWALHILSPNFISTSMQRRAKYNLNALSHDTAIGLIQHALDSGVQVAEVFVDTVG 145
Query: 131 DAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHR 190
AEKYQ KL Q+FP ++ V KADSL+PVVS ASI AKV RDR ++ W F E EN+
Sbjct: 146 PAEKYQEKLKQQFPGLEVTVKPKADSLFPVVSAASICAKVARDRVVKNWKFVEALENVDS 205
Query: 191 NFGSGYPGDHK---------HIIFGFPSLVRFSWGTCTSHFKD-IVEVLWESDEMDEDVS 240
++GSGYP D K +FGFP VRFSW T ++ V V W+ E D
Sbjct: 206 DYGSGYPNDPKTKEWLTQCLDPVFGFPQFVRFSWSTAQVILENKAVAVRWDDTEDD---P 262
Query: 241 SRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLT 286
S++S + L + ++R + +F RKLE +T
Sbjct: 263 SQKSAQSLLSYFARKDTPTRRPAH----------RFFYERKLETVT 298
>gi|194766523|ref|XP_001965374.1| GF24795 [Drosophila ananassae]
gi|190617984|gb|EDV33508.1| GF24795 [Drosophila ananassae]
Length = 347
Score = 246 bits (627), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 131/288 (45%), Positives = 173/288 (60%), Gaps = 23/288 (7%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVND 73
PC++G+DEAGRGPVLGPMVYG YCP ++ L L ADSK L EEKR+ +F D+ D
Sbjct: 70 PCMLGVDEAGRGPVLGPMVYGIAYCPLESKKALEDLGCADSKQLTEEKRDIIFNDINTKD 129
Query: 74 ----SVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 129
+GWAV+II P +S M ++K +LNE+S DSA+GLI + ++ G+ ++EVY+DTV
Sbjct: 130 YATSCIGWAVEIISPNTISTSMYRRSKCSLNEVSMDSAMGLIQQAIDAGVNISEVYVDTV 189
Query: 130 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH 189
G EKYQ KL +RFP+ K V+KKADS YP+VS ASI AKVTRD L+ W F E
Sbjct: 190 GPPEKYQEKLLKRFPTFKITVAKKADSTYPIVSAASICAKVTRDHALKVWNFPEGLVIKD 249
Query: 190 RNFGSGYPGD---------HKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWESDEMDEDVS 240
FGSGYPGD H ++FGFP LVRFSW T + D + E DE D +
Sbjct: 250 NAFGSGYPGDPVTKRFLAEHIDVVFGFPRLVRFSWSTAENALADKAFDM-EFDEPDTE-K 307
Query: 241 SRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 288
+ +G + K F + + E I + C+F + R L + F
Sbjct: 308 PKYAGTKLTKF----FKGTTKSGEVI----REECRFFKQRHLANVIDF 347
>gi|449688727|ref|XP_002166509.2| PREDICTED: ribonuclease H2 subunit A-like, partial [Hydra
magnipapillata]
Length = 296
Score = 246 bits (627), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 134/284 (47%), Positives = 176/284 (61%), Gaps = 24/284 (8%)
Query: 12 SNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKV 71
+ PC +GIDEAGRGPVLGPMVY YCP S + L+ L FADSKTL EEKR+ L ++
Sbjct: 26 TEPCCLGIDEAGRGPVLGPMVYSVCYCPISMIKKLSDLGFADSKTLTEEKRDNLLSVIEN 85
Query: 72 N-DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG 130
N D +GWA+ II P E+S +ML + K+ LNEISH +AI L + +N G +TE+Y+DTVG
Sbjct: 86 NCDFIGWAIKIISPTEISNEMLRRYKVTLNEISHGAAIELTRKTINAGANITEMYVDTVG 145
Query: 131 DAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHR 190
DA KYQ KLS+ F I V+ KAD+L+P+VS ASI AKV RDR ++ W F E ++
Sbjct: 146 DALKYQNKLSEVFDGISVKVTPKADALFPIVSAASICAKVARDRCIQNWQFPEG--DIKE 203
Query: 191 NFGSGYPGDHK---------HIIFGFPSLVRFSWGTCTSHF-KDIVEVLWESDEMDEDVS 240
++GSGYP D K +FGFP VRFSW TC + K EV+WE DE +E
Sbjct: 204 DYGSGYPADPKTKQWLKDVVDPVFGFPQFVRFSWSTCANILEKHACEVMWEDDEAEE--- 260
Query: 241 SRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQ 284
+ K+ + ++ F + K+ + I KF RKLEQ
Sbjct: 261 ---TDKKIIPIT--TFFAQKKNAANISVQPS---KFFLERKLEQ 296
>gi|427795471|gb|JAA63187.1| Putative ribonuclease hi, partial [Rhipicephalus pulchellus]
Length = 325
Score = 245 bits (626), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 130/284 (45%), Positives = 172/284 (60%), Gaps = 21/284 (7%)
Query: 12 SNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKV 71
S PCI+G+DEAGRGPVLGPMVYG YCP S + L L FADSKTL EEKREEL + ++
Sbjct: 50 SEPCILGVDEAGRGPVLGPMVYGIAYCPLSAESQLKELGFADSKTLTEEKREELLKAVEK 109
Query: 72 NDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGD 131
+ +G+ V++I P +S ML+ K +LN ISHDSAIGLI + L+ G+ +T+VY+DTVG
Sbjct: 110 SSFLGFMVEVIPPSVISGHMLDVTKYSLNAISHDSAIGLIRQALDDGVQVTQVYVDTVGP 169
Query: 132 AEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRN 191
EKYQ KL FP IK V+KKAD+ YP+VS ASI AKV RD ++ W F E
Sbjct: 170 PEKYQEKLQALFPDIKVTVAKKADATYPIVSAASICAKVARDHAIQSWEFPEGINVKAEE 229
Query: 192 FGSGYPGD---------HKHIIFGFPSLVRFSWGTCTSHFKD-IVEVLWESDEMDEDVSS 241
+GSGYP D + +FGFPSLVRFSW T +D V+W DE+ ++
Sbjct: 230 YGSGYPNDPVTKKFLLENMDTVFGFPSLVRFSWSTAEKLLEDNAAAVMW-----DEEDNA 284
Query: 242 RRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQL 285
+SG ++ F R +++ + F +R + QL
Sbjct: 285 EQSGMASIQSF---FQRGPNRGKKVAAK---ESSFFTSRAISQL 322
>gi|195470258|ref|XP_002087425.1| GE16128 [Drosophila yakuba]
gi|194173526|gb|EDW87137.1| GE16128 [Drosophila yakuba]
Length = 347
Score = 244 bits (624), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 132/288 (45%), Positives = 172/288 (59%), Gaps = 23/288 (7%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVND 73
PC++G+DEAGRGPVLGPMVYG YCP ++ L L ADSK L EEKR+ +F D+ D
Sbjct: 70 PCMLGVDEAGRGPVLGPMVYGISYCPLESKKALEDLGCADSKQLTEEKRDIIFNDINTKD 129
Query: 74 ----SVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 129
+GWAV+II P +S M ++K +LNE+S DSA+GLI + ++ G+ + EVY+DTV
Sbjct: 130 YATSCIGWAVEIISPNTISTSMYRRSKCSLNEVSMDSAMGLIQQAIDAGVNIAEVYVDTV 189
Query: 130 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH 189
G EKYQ KL +RFPS K V+KKADS YP+VS ASI AKVTRD L+ W F E
Sbjct: 190 GPPEKYQEKLLKRFPSFKITVAKKADSTYPIVSAASICAKVTRDHALKVWKFPEGLVIKD 249
Query: 190 RNFGSGYPGD---------HKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWESDEMDEDVS 240
FGSGYPGD H ++FGFP LVRFSW T + D + E DE D +
Sbjct: 250 NAFGSGYPGDPVTRRFLTEHIDLVFGFPRLVRFSWSTAENALADKAYDM-EFDEPDSE-K 307
Query: 241 SRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 288
+ +G + K F + + E I + C+F + R L + F
Sbjct: 308 PKFAGTKLTKF----FKGTTKSGEVI----REECRFFKQRHLGSVMEF 347
>gi|194853461|ref|XP_001968168.1| GG24650 [Drosophila erecta]
gi|190660035|gb|EDV57227.1| GG24650 [Drosophila erecta]
Length = 347
Score = 244 bits (624), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 132/288 (45%), Positives = 173/288 (60%), Gaps = 23/288 (7%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVND 73
PC++G+DEAGRGPVLGPMVYG YCP ++ L L ADSK L EEKR+ +F D+ D
Sbjct: 70 PCMLGVDEAGRGPVLGPMVYGISYCPLESKKPLEDLGCADSKQLTEEKRDIIFNDINTKD 129
Query: 74 ----SVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 129
+GWAV+II P +S M ++K +LNE+S DSA+GLI + ++ G+ + EVY+DTV
Sbjct: 130 YATSCIGWAVEIISPSTISTSMYRRSKCSLNEVSMDSAMGLIQQAIDAGVNIAEVYVDTV 189
Query: 130 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH 189
G EKYQ KL +RFPS K V+KKADS YP+VS ASI AKVTRD L+ W F E
Sbjct: 190 GPPEKYQEKLLKRFPSFKITVAKKADSTYPIVSAASICAKVTRDHALKVWKFPEGLVIKD 249
Query: 190 RNFGSGYPGD---------HKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWESDEMDEDVS 240
FGSGYPGD H ++FGFP LVRFSW T + D + E DE D +
Sbjct: 250 NAFGSGYPGDPVTKRFLAEHIDLVFGFPRLVRFSWSTAENALADKAYDM-EFDEPDSE-K 307
Query: 241 SRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 288
++ +G + K F + + E I + C+F + R L + F
Sbjct: 308 AKFAGTKLTKF----FKGTTKSGEVI----REECRFFKQRHLGNVMDF 347
>gi|428176594|gb|EKX45478.1| ribonuclease H2 large subunit [Guillardia theta CCMP2712]
Length = 241
Score = 244 bits (623), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 125/233 (53%), Positives = 162/233 (69%), Gaps = 13/233 (5%)
Query: 17 MGIDEAGRGPVLGPMVYG-CLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
MGIDEAGRGPV+GPMVYG C+ C L + FADSKTL EEKRE LFE +K ++ +
Sbjct: 1 MGIDEAGRGPVIGPMVYGACIIC-SKRNNELKEMGFADSKTLTEEKREVLFERIKESNVL 59
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
GW V+++ ++LS ML + NLN ISHD+AIG+I +VL L +V++DTVGD E+Y
Sbjct: 60 GWLVEVLSAKQLSGSMLQRAPYNLNAISHDTAIGMIRKVLAANFNLKKVFVDTVGDPERY 119
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 195
++KLS FPSI+F V KKADSL+PVVS ASI AKVTRDR +R W F+ET + ++GSG
Sbjct: 120 ESKLSSLFPSIEFAVRKKADSLFPVVSAASICAKVTRDRCVRDWQFKETGVSFSTDYGSG 179
Query: 196 YPGDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVL-----WESDEMDEDVSSRR 243
YP + + +FG+P LVRFSW T K I+E WE+DEM+ED S +
Sbjct: 180 YPSEPQ--VFGYPDLVRFSWSTT----KKIIETQGESFEWEADEMEEDQSQSK 226
>gi|223967509|emb|CAR93485.1| CG13690-PA [Drosophila melanogaster]
Length = 347
Score = 244 bits (623), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 132/288 (45%), Positives = 172/288 (59%), Gaps = 23/288 (7%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVND 73
PC++G+DEAGRGPVLGPMVYG YCP + L L ADSK L EEKR+ +F D+ +
Sbjct: 70 PCMLGVDEAGRGPVLGPMVYGISYCPLESNKALEDLGCADSKQLTEEKRDIIFNDINTKE 129
Query: 74 ----SVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 129
VGWAV+II P +S M ++K +LNE+S DSA+GLI + ++ G+ + EVY+DTV
Sbjct: 130 YATSCVGWAVEIISPNTISTSMYRRSKCSLNEVSMDSAMGLIQQAIDAGVNIAEVYVDTV 189
Query: 130 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH 189
G EKYQ KL +RFPS K V+KKADS YP+VS ASI AKVTRD L+ W F E
Sbjct: 190 GPPEKYQEKLLKRFPSFKITVAKKADSTYPIVSAASICAKVTRDHALKVWSFPEGLVIKD 249
Query: 190 RNFGSGYPGD---------HKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWESDEMDEDVS 240
FGSGYPGD + ++FGFP LVRFSW T + D + E DE D +
Sbjct: 250 NEFGSGYPGDPVTRRFLTEYIDLVFGFPRLVRFSWSTAENALADKAYDM-EFDEPDSE-K 307
Query: 241 SRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 288
+ +G + K F + + E I + C+F + R LE + F
Sbjct: 308 PKYAGTKLTKF----FKGTTKSGEII----REECRFFKQRHLESVMEF 347
>gi|195456019|ref|XP_002074967.1| GK22869 [Drosophila willistoni]
gi|194171052|gb|EDW85953.1| GK22869 [Drosophila willistoni]
Length = 336
Score = 244 bits (622), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 133/289 (46%), Positives = 174/289 (60%), Gaps = 23/289 (7%)
Query: 13 NPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVN 72
PC++G+DEAGRGPVLGPMVYG YCP +Q L L ADSK L EEKR+ +F +L
Sbjct: 58 QPCMLGVDEAGRGPVLGPMVYGISYCPLESKQALIDLGCADSKQLTEEKRDIIFNELNTL 117
Query: 73 D----SVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDT 128
D +GWAV+II P +S+ M ++K +LNE+S DSA+GLI + ++ G+ + EVY+DT
Sbjct: 118 DYATECIGWAVEIISPNVISSSMYRRSKCSLNEVSMDSAMGLIQQAIDAGVQIAEVYVDT 177
Query: 129 VGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENM 188
VG EKYQ KL +RFP+ K V+KKADS YP+VS ASI AKVTRD L+ W F E
Sbjct: 178 VGPPEKYQEKLLRRFPNFKITVAKKADSTYPIVSAASICAKVTRDHALKVWKFPEGLVIK 237
Query: 189 HRNFGSGYPGD---------HKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWESDEMDEDV 239
FGSGYPGD + ++FGFP LVRFSW T + D + E DE D +
Sbjct: 238 DNAFGSGYPGDPVTKRFLVENIDLVFGFPRLVRFSWSTAENALVDKAYEM-EFDEPDSE- 295
Query: 240 SSRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 288
+ +G + K + S + + EE C+FL R L +T F
Sbjct: 296 KPKYAGAKLTKFFNKTTKSGEIKREE--------CRFLSQRHLGSVTDF 336
>gi|348520822|ref|XP_003447926.1| PREDICTED: ribonuclease H2 subunit A-like [Oreochromis niloticus]
Length = 308
Score = 243 bits (619), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 128/282 (45%), Positives = 169/282 (59%), Gaps = 16/282 (5%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL-KVND 73
C +GIDEAGRGPVLGPMVYG +CP S ++ L + ADSKTL E +RE LFE L +
Sbjct: 29 CCLGIDEAGRGPVLGPMVYGICFCPLSKKEELKDMKVADSKTLTEAERENLFEKLVEAKS 88
Query: 74 SVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAE 133
VGWA+ I+ P +S ML + K NLN +SHD+AI L+ L+ G+ L E+Y+DTVG A+
Sbjct: 89 YVGWALQILSPNTISTCMLRRTKYNLNALSHDTAIDLVQYALDSGVQLKEIYVDTVGPAD 148
Query: 134 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG 193
KY+ KLSQRFP I+ V KADSL+PVVS ASI AKV RDR ++GW F E + ++G
Sbjct: 149 KYEVKLSQRFPGIQVTVRPKADSLFPVVSAASICAKVARDRVVKGWNFAEDLGEVDTDYG 208
Query: 194 SGYPGDHK---------HIIFGFPSLVRFSWGTCTSHFKD-IVEVLWESDEMDEDVSSRR 243
SGYP D K +FG+P VRFSW T + V V W+ DE D + +++R
Sbjct: 209 SGYPNDPKTKAWLLKYLDPVFGYPQFVRFSWSTAQTLMDSKAVNVHWDDDEEDGEKAAQR 268
Query: 244 SGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQL 285
+ + LS SS + +F R+L+ L
Sbjct: 269 QNNKSM-LSYFSVSSGGNNQNATHQAH----RFFTERRLKSL 305
>gi|195032708|ref|XP_001988545.1| GH10519 [Drosophila grimshawi]
gi|193904545|gb|EDW03412.1| GH10519 [Drosophila grimshawi]
Length = 334
Score = 242 bits (618), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 132/289 (45%), Positives = 172/289 (59%), Gaps = 23/289 (7%)
Query: 13 NPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKV- 71
PC++G+DEAGRGPVLGPMVYG YCP + L L ADSK L EEKR+ +F DL
Sbjct: 56 QPCMLGVDEAGRGPVLGPMVYGISYCPLESKSVLVELGCADSKQLTEEKRDIIFNDLNTL 115
Query: 72 ---NDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDT 128
N +GWAV+II P +S+ M + K +LNEIS DSA+GLI ++ G+ + EVY+DT
Sbjct: 116 EYANSCIGWAVEIISPNVISSSMYRRTKCSLNEISMDSAMGLIQHAIDAGVNIAEVYVDT 175
Query: 129 VGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENM 188
VG EKYQ KL +RFP+ K V+KKADS YP+VS ASI AKVTRD L+ W F E
Sbjct: 176 VGPPEKYQEKLLKRFPNFKITVAKKADSTYPIVSAASICAKVTRDHALKVWQFPEGLLIK 235
Query: 189 HRNFGSGYPGD---------HKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWESDEMDEDV 239
FGSGYPGD H ++FGFP LVRFSW T + D + E DE D +
Sbjct: 236 DNAFGSGYPGDPVTKRFLTEHIDLVFGFPRLVRFSWSTAENALADKAFEM-EFDEPDSE- 293
Query: 240 SSRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 288
+ +G + K F ++ E++ + C+F + L+ +T F
Sbjct: 294 KPKYAGTKLTK-----FFKGTTKTGEVK---REECRFFKQCHLDNVTDF 334
>gi|260794677|ref|XP_002592334.1| hypothetical protein BRAFLDRAFT_285333 [Branchiostoma floridae]
gi|229277552|gb|EEN48345.1| hypothetical protein BRAFLDRAFT_285333 [Branchiostoma floridae]
Length = 303
Score = 242 bits (618), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 122/241 (50%), Positives = 156/241 (64%), Gaps = 13/241 (5%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLK-VN 72
PC +GIDEAGRGPVLGPMVYG YCP S Q L + FADSKTL EE+RE+LFE +
Sbjct: 28 PCCLGIDEAGRGPVLGPMVYGICYCPLSGQDRLKDMGFADSKTLTEEQREKLFEAIAGAG 87
Query: 73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
+ +GW + I+ P +S ML ++K NLN +SHD+AIGLI R L+ G+ L EVY+DTVGDA
Sbjct: 88 EFMGWTIHILAPNAISNCMLRRSKYNLNTLSHDTAIGLIQRTLDSGVNLQEVYVDTVGDA 147
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIF--EETAENMHR 190
KYQ KL FP + V+ KAD+ +P+VS ASI AKV RDR ++GW F E+ + R
Sbjct: 148 TKYQDKLKGIFPDLDITVTPKADAKFPIVSAASICAKVARDRAVKGWTFFEEKDGNTISR 207
Query: 191 NFGSGYPGDHK---------HIIFGFPSLVRFSWGTCTSHFKD-IVEVLWESDEMDEDVS 240
FGSGYP D + +FGFP VRFSW T + D V V W+ ++ DE +
Sbjct: 208 KFGSGYPSDPETKKWLASMVEPVFGFPQFVRFSWSTASKILDDKAVPVNWDDEDEDEKAA 267
Query: 241 S 241
+
Sbjct: 268 T 268
>gi|37362282|gb|AAQ91269.1| ribonuclease H2, large subunit [Danio rerio]
Length = 307
Score = 242 bits (617), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 130/282 (46%), Positives = 168/282 (59%), Gaps = 17/282 (6%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
C +GIDEAGRGPVLGPMVYG +CP S ++ L L ADSKTL E +RE LF L S
Sbjct: 29 CCLGIDEAGRGPVLGPMVYGICFCPVSRKEDLKNLKVADSKTLTEAERENLFVKLDEAKS 88
Query: 75 -VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAE 133
VGWA+ I+ P +S ML + K NLN +SHD+AIGL+ L+ G+ L EV++DTVG AE
Sbjct: 89 FVGWALQILSPNMISTSMLQRAKYNLNALSHDAAIGLVQYALDSGVQLKEVFVDTVGPAE 148
Query: 134 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG 193
KYQ KLSQRFP ++ V KADSL+P+VS ASI AKV RD ++ W F E ++ ++G
Sbjct: 149 KYQDKLSQRFPGVEVTVRPKADSLFPIVSAASICAKVARDHAVKSWKFAEDLGDVDTDYG 208
Query: 194 SGYPGDHK---------HIIFGFPSLVRFSWGTCTSHFKD-IVEVLWESDEMDEDVSSRR 243
SGYP D K +FG+P VRFSW T + V V W+ DE D +
Sbjct: 209 SGYPNDPKTKSWLLKYLDPVFGYPQFVRFSWSTAQTLLDSKAVTVHWDDDEED----GEK 264
Query: 244 SGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQL 285
+ RQ S + + S + SE + R F RKL+ +
Sbjct: 265 AAARQNNTSVLSYFSRNKPSELTHTRDTHR--FFTERKLKSI 304
>gi|28374439|gb|AAH46061.1| Ribonuclease H2, subunit A [Danio rerio]
Length = 307
Score = 241 bits (616), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 130/282 (46%), Positives = 168/282 (59%), Gaps = 17/282 (6%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
C +GIDEAGRGPVLGPMVYG +CP S ++ L L ADSKTL E +RE LF L S
Sbjct: 29 CCLGIDEAGRGPVLGPMVYGICFCPVSRKEDLKNLKVADSKTLTEAERENLFVKLDEAKS 88
Query: 75 -VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAE 133
VGWA+ I+ P +S ML + K NLN +SHD+AIGL+ L+ G+ L EV++DTVG AE
Sbjct: 89 FVGWALQILSPNMISTSMLQRAKYNLNALSHDAAIGLVQYALDSGVQLKEVFVDTVGPAE 148
Query: 134 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG 193
KYQ KLSQRFP ++ V KADSL+P+VS ASI AKV RD ++ W F E ++ ++G
Sbjct: 149 KYQDKLSQRFPGVEVTVRPKADSLFPIVSAASICAKVARDHAVKSWKFAEDLGDVDTDYG 208
Query: 194 SGYPGDHK---------HIIFGFPSLVRFSWGTCTSHFKD-IVEVLWESDEMDEDVSSRR 243
SGYP D K +FG+P VRFSW T + V V W+ DE D +
Sbjct: 209 SGYPNDPKTKSWLLKYLDPVFGYPQFVRFSWSTAQTLLDSKAVTVHWDDDEED----GEK 264
Query: 244 SGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQL 285
+ RQ S + + S + SE + R F RKL+ +
Sbjct: 265 AAARQNNTSVLSYFSRNKPSELTHTRDTHR--FFTERKLKSI 304
>gi|196017000|ref|XP_002118348.1| hypothetical protein TRIADDRAFT_51212 [Trichoplax adhaerens]
gi|190579064|gb|EDV19170.1| hypothetical protein TRIADDRAFT_51212 [Trichoplax adhaerens]
Length = 299
Score = 241 bits (616), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 131/296 (44%), Positives = 175/296 (59%), Gaps = 26/296 (8%)
Query: 5 AALPKWASN-PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKRE 63
+ P+ A N PC +GIDEAGRGPVLG MVYG Y P S + + L ADSK L E+ R+
Sbjct: 18 SGTPQAAQNEPCCLGIDEAGRGPVLGAMVYGACYYPLSQSEKVKELGVADSKVLTEDMRD 77
Query: 64 ELFEDLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTE 123
ELF+ + +DSVGW V+II P ++S KML + K +LN +SHD+AI LI + + G+ + E
Sbjct: 78 ELFQKINSDDSVGWLVEIISPSDISTKMLARTKYSLNAVSHDAAINLIRQSIQKGVQVKE 137
Query: 124 VYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEE 183
+Y+DTVG AE YQ KLS+ FP I V+ KAD+L+P VS ASI+AKVTRD+ L W F E
Sbjct: 138 IYVDTVGVAENYQNKLSELFPDITIKVTPKADALFPCVSAASIIAKVTRDKVLSNWKFPE 197
Query: 184 TAENMHRNFGSGYPGD---------HKHIIFGFPSLVRFSWGTCTSHFKD-IVEVLWESD 233
++G GYP D + +FG+P VRFSW TC + V V WE D
Sbjct: 198 DESYNSSDYGCGYPSDPATQKWLNSNLDKVFGYPQFVRFSWSTCQKILDESAVRVHWEDD 257
Query: 234 -EMDEDVSSRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 288
E D D + +S + F + K ++ R FLE+RKL+Q+ F
Sbjct: 258 EEFDNDNT----------VSLLSFFTQKG----VQEKAVKRHNFLESRKLKQVVKF 299
>gi|223967505|emb|CAR93483.1| CG13690-PA [Drosophila melanogaster]
Length = 347
Score = 241 bits (616), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 131/288 (45%), Positives = 171/288 (59%), Gaps = 23/288 (7%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVND 73
PC++G+DEAGRGPVLGPMVYG YCP + L L ADSK L E KR+ +F D+ +
Sbjct: 70 PCMLGVDEAGRGPVLGPMVYGISYCPLESNKALEVLGCADSKQLTEGKRDIIFNDINTKE 129
Query: 74 ----SVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 129
VGWAV+II P +S M ++K +LNE+S DSA+GLI + ++ G+ + EVY+DTV
Sbjct: 130 YATSCVGWAVEIISPNTISTSMYRRSKCSLNEVSMDSAMGLIQQAIDAGVNIAEVYVDTV 189
Query: 130 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH 189
G EKYQ KL +RFPS K V+KKADS YP+VS ASI AKVTRD L+ W F E
Sbjct: 190 GPPEKYQEKLLKRFPSFKITVAKKADSTYPIVSAASICAKVTRDHALKVWSFPEGLVIKD 249
Query: 190 RNFGSGYPGD---------HKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWESDEMDEDVS 240
FGSGYPGD + ++FGFP LVRFSW T + D + E DE D +
Sbjct: 250 NEFGSGYPGDPVTRRFLTEYIDLVFGFPRLVRFSWSTAENALADKAYDM-EFDEPDSE-K 307
Query: 241 SRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 288
+ +G + K F + + E I + C+F + R LE + F
Sbjct: 308 PKYAGTKLTKF----FKGTTKSGEII----REECRFFKQRHLESVMEF 347
>gi|302765497|ref|XP_002966169.1| hypothetical protein SELMODRAFT_439531 [Selaginella moellendorffii]
gi|300165589|gb|EFJ32196.1| hypothetical protein SELMODRAFT_439531 [Selaginella moellendorffii]
Length = 361
Score = 241 bits (615), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 133/271 (49%), Positives = 165/271 (60%), Gaps = 48/271 (17%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVG 76
MGIDEAGRGPVLGPMVYGC YC +Y++ LA+L FAD + K + F
Sbjct: 1 MGIDEAGRGPVLGPMVYGCAYCAVAYKEELASLKFAD---IDRGKTRKAF---------- 47
Query: 77 WAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQ 136
REL ++ K +LN+IS+DSAIGLI VL+ G+LL+EVY+DTVGDAEKYQ
Sbjct: 48 --------RELEGGPIDGVKRSLNDISYDSAIGLIKLVLSRGVLLSEVYVDTVGDAEKYQ 99
Query: 137 AKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGY 196
A+LS+ FP IKF V+KKADSL+P+VS ASI AKVTRD+ L+ W+ +E + RNFGSGY
Sbjct: 100 ARLSELFPHIKFTVAKKADSLFPIVSAASIAAKVTRDQALKSWVMDEAGCTISRNFGSGY 159
Query: 197 PGD---------HKHIIFGFPSLVRFSWGTCTSHFKD-IVEVLWESDEMDEDVSSRRSGK 246
PGD H +FGFPSLVRFSW TC + V V WE+DE D+ ++S
Sbjct: 160 PGDPDTKAWLEQHMDDVFGFPSLVRFSWATCKPLIAEGGVHVYWEADEDDDTALVKKS-- 217
Query: 247 RQLKLSDIGFSSSKRRSEEIESSGKGRCKFL 277
RS + ESSG R F
Sbjct: 218 ---------------RSAQTESSGALRHSFF 233
>gi|24580635|ref|NP_608521.1| CG13690 [Drosophila melanogaster]
gi|11387117|sp|Q9VPP5.1|RNH2A_DROME RecName: Full=Ribonuclease H2 subunit A; Short=RNase H2 subunit A;
AltName: Full=Ribonuclease HI large subunit; Short=RNase
HI large subunit; AltName: Full=Ribonuclease HI subunit
A
gi|7296208|gb|AAF51500.1| CG13690 [Drosophila melanogaster]
gi|66772719|gb|AAY55671.1| IP10665p [Drosophila melanogaster]
gi|220951678|gb|ACL88382.1| CG13690-PA [synthetic construct]
gi|223967491|emb|CAR93476.1| CG13690-PA [Drosophila melanogaster]
gi|223967495|emb|CAR93478.1| CG13690-PA [Drosophila melanogaster]
gi|223967497|emb|CAR93479.1| CG13690-PA [Drosophila melanogaster]
gi|223967507|emb|CAR93484.1| CG13690-PA [Drosophila melanogaster]
Length = 347
Score = 241 bits (615), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 131/288 (45%), Positives = 171/288 (59%), Gaps = 23/288 (7%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVND 73
PC++G+DEAGRGPVLGPMVYG YCP + L L ADSK L E KR+ +F D+ +
Sbjct: 70 PCMLGVDEAGRGPVLGPMVYGISYCPLESNKALEDLGCADSKQLTEGKRDIIFNDINTKE 129
Query: 74 ----SVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 129
VGWAV+II P +S M ++K +LNE+S DSA+GLI + ++ G+ + EVY+DTV
Sbjct: 130 YATSCVGWAVEIISPNTISTSMYRRSKCSLNEVSMDSAMGLIQQAIDAGVNIAEVYVDTV 189
Query: 130 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH 189
G EKYQ KL +RFPS K V+KKADS YP+VS ASI AKVTRD L+ W F E
Sbjct: 190 GPPEKYQEKLLKRFPSFKITVAKKADSTYPIVSAASICAKVTRDHALKVWSFPEGLVIKD 249
Query: 190 RNFGSGYPGD---------HKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWESDEMDEDVS 240
FGSGYPGD + ++FGFP LVRFSW T + D + E DE D +
Sbjct: 250 NEFGSGYPGDPVTRRFLTEYIDLVFGFPRLVRFSWSTAENALADKAYDM-EFDEPDSE-K 307
Query: 241 SRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 288
+ +G + K F + + E I + C+F + R LE + F
Sbjct: 308 PKYAGTKLTKF----FKGTTKSGEII----REECRFFKQRHLESVMEF 347
>gi|116806082|emb|CAL26424.1| CG13690 [Drosophila melanogaster]
gi|116806084|emb|CAL26425.1| CG13690 [Drosophila melanogaster]
gi|116806090|emb|CAL26428.1| CG13690 [Drosophila melanogaster]
Length = 347
Score = 241 bits (615), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 131/288 (45%), Positives = 171/288 (59%), Gaps = 23/288 (7%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVND 73
PC++G+DEAGRGPVLGPMVYG YCP + L L ADSK L E KR+ +F D+ +
Sbjct: 70 PCMLGVDEAGRGPVLGPMVYGISYCPLESNKALEDLGCADSKQLTEGKRDIIFNDINTKE 129
Query: 74 ----SVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 129
VGWAV+II P +S M ++K +LNE+S DSA+GLI + ++ G+ + EVY+DTV
Sbjct: 130 YATSCVGWAVEIISPNTISTSMYRRSKCSLNEVSMDSAMGLIQQAIDAGVNIAEVYVDTV 189
Query: 130 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH 189
G EKYQ KL +RFPS K V+KKADS YP+VS ASI AKVTRD L+ W F E
Sbjct: 190 GPPEKYQEKLLKRFPSFKITVAKKADSTYPIVSAASICAKVTRDHALKVWSFPEGLVIKD 249
Query: 190 RNFGSGYPGD---------HKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWESDEMDEDVS 240
FGSGYPGD + ++FGFP LVRFSW T + D + E DE D +
Sbjct: 250 NEFGSGYPGDPVTRRFLTEYIDLVFGFPRLVRFSWSTAENALADKAYDM-EFDEPDSE-K 307
Query: 241 SRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 288
+ +G + K F + + E I + C+F + R LE + F
Sbjct: 308 PKYAGTKLTKF----FKGTTKSGEII----REECRFFKQRHLESVMEF 347
>gi|116806080|emb|CAL26423.1| CG13690 [Drosophila melanogaster]
gi|116806088|emb|CAL26427.1| CG13690 [Drosophila melanogaster]
gi|116806100|emb|CAL26433.1| CG13690 [Drosophila melanogaster]
Length = 347
Score = 241 bits (615), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 131/288 (45%), Positives = 171/288 (59%), Gaps = 23/288 (7%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVND 73
PC++G+DEAGRGPVLGPMVYG YCP + L L ADSK L E KR+ +F D+ +
Sbjct: 70 PCMLGVDEAGRGPVLGPMVYGISYCPLESNKALEDLGCADSKQLTEGKRDIIFNDINTKE 129
Query: 74 ----SVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 129
VGWAV+II P +S M ++K +LNE+S DSA+GLI + ++ G+ + EVY+DTV
Sbjct: 130 YATSCVGWAVEIISPNTISTSMYRRSKCSLNEVSMDSAMGLIQQAIDAGVNIAEVYVDTV 189
Query: 130 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH 189
G EKYQ KL +RFPS K V+KKADS YP+VS ASI AKVTRD L+ W F E
Sbjct: 190 GPPEKYQEKLLKRFPSFKITVAKKADSTYPIVSAASICAKVTRDHALKVWSFPEGLVIKD 249
Query: 190 RNFGSGYPGD---------HKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWESDEMDEDVS 240
FGSGYPGD + ++FGFP LVRFSW T + D + E DE D +
Sbjct: 250 NEFGSGYPGDPVTRRFLTEYIDLVFGFPRLVRFSWSTAENALADKAYDM-EFDEPDSE-K 307
Query: 241 SRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 288
+ +G + K F + + E I + C+F + R LE + F
Sbjct: 308 PKYAGTKLTKF----FKGTTKSGEII----REECRFFKQRHLESVMEF 347
>gi|223967503|emb|CAR93482.1| CG13690-PA [Drosophila melanogaster]
Length = 347
Score = 241 bits (615), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 131/288 (45%), Positives = 171/288 (59%), Gaps = 23/288 (7%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVND 73
PC++G+DEAGRGPVLGPMVYG YCP + L L ADSK L E KR+ +F D+ +
Sbjct: 70 PCMLGVDEAGRGPVLGPMVYGISYCPLESNKALEDLGCADSKQLTEGKRDIIFNDINAKE 129
Query: 74 ----SVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 129
VGWAV+II P +S M ++K +LNE+S DSA+GLI + ++ G+ + EVY+DTV
Sbjct: 130 YATSCVGWAVEIISPNTISTSMYRRSKCSLNEVSMDSAMGLIQQAIDAGVNIAEVYVDTV 189
Query: 130 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH 189
G EKYQ KL +RFPS K V+KKADS YP+VS ASI AKVTRD L+ W F E
Sbjct: 190 GPPEKYQEKLLKRFPSFKITVAKKADSTYPIVSAASICAKVTRDHALKVWSFPEGLVIKD 249
Query: 190 RNFGSGYPGD---------HKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWESDEMDEDVS 240
FGSGYPGD + ++FGFP LVRFSW T + D + E DE D +
Sbjct: 250 NEFGSGYPGDPVTRRFLTEYIDLVFGFPRLVRFSWSTAENALADKAYDM-EFDEPDSE-K 307
Query: 241 SRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 288
+ +G + K F + + E I + C+F + R LE + F
Sbjct: 308 PKYAGTKLTKF----FKGTTKSGEII----REECRFFKQRHLESVMEF 347
>gi|116806096|emb|CAL26431.1| CG13690 [Drosophila melanogaster]
Length = 347
Score = 241 bits (615), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 131/288 (45%), Positives = 171/288 (59%), Gaps = 23/288 (7%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVND 73
PC++G+DEAGRGPVLGPMVYG YCP + L L ADSK L E KR+ +F D+ +
Sbjct: 70 PCMLGVDEAGRGPVLGPMVYGISYCPLESNKALEDLGCADSKQLTEGKRDIIFNDINTKE 129
Query: 74 ----SVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 129
VGWAV+II P +S M ++K +LNE+S DSA+GLI + ++ G+ + EVY+DTV
Sbjct: 130 YATSCVGWAVEIISPNTISTSMYRRSKCSLNEVSMDSAMGLIQQAIDAGVNIAEVYVDTV 189
Query: 130 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH 189
G EKYQ KL +RFPS K V+KKADS YP+VS ASI AKVTRD L+ W F E
Sbjct: 190 GPPEKYQEKLLKRFPSFKITVAKKADSTYPIVSAASICAKVTRDHALKVWSFPEGLVIKD 249
Query: 190 RNFGSGYPGD---------HKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWESDEMDEDVS 240
FGSGYPGD + ++FGFP LVRFSW T + D + E DE D +
Sbjct: 250 NEFGSGYPGDPVTRRFLTEYIDLVFGFPRLVRFSWSTAENALADKAYDM-EFDEPDSE-K 307
Query: 241 SRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 288
+ +G + K F + + E I + C+F + R LE + F
Sbjct: 308 PKYAGTKLTKF----FKGTTKSGEII----REECRFFKQRHLESVMEF 347
>gi|116806092|emb|CAL26429.1| CG13690 [Drosophila melanogaster]
gi|116806094|emb|CAL26430.1| CG13690 [Drosophila melanogaster]
gi|116806102|emb|CAL26434.1| CG13690 [Drosophila melanogaster]
Length = 347
Score = 241 bits (615), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 131/288 (45%), Positives = 171/288 (59%), Gaps = 23/288 (7%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVND 73
PC++G+DEAGRGPVLGPMVYG YCP + L L ADSK L E KR+ +F D+ +
Sbjct: 70 PCMLGVDEAGRGPVLGPMVYGISYCPLESNKALEDLGCADSKQLTEGKRDIIFNDINTKE 129
Query: 74 ----SVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 129
VGWAV+II P +S M ++K +LNE+S DSA+GLI + ++ G+ + EVY+DTV
Sbjct: 130 YATSCVGWAVEIISPNTISTSMYRRSKCSLNEVSMDSAMGLIQQAIDAGVNIAEVYVDTV 189
Query: 130 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH 189
G EKYQ KL +RFPS K V+KKADS YP+VS ASI AKVTRD L+ W F E
Sbjct: 190 GPPEKYQEKLLKRFPSFKITVAKKADSTYPIVSAASICAKVTRDHALKVWSFPEGLVIKD 249
Query: 190 RNFGSGYPGD---------HKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWESDEMDEDVS 240
FGSGYPGD + ++FGFP LVRFSW T + D + E DE D +
Sbjct: 250 NEFGSGYPGDPVTRRFLTEYIDLVFGFPRLVRFSWSTAENALADKAYDM-EFDEPDSE-K 307
Query: 241 SRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 288
+ +G + K F + + E I + C+F + R LE + F
Sbjct: 308 PKYAGTKLTKF----FKGTTKSGEII----REECRFFKQRHLESVMEF 347
>gi|195575541|ref|XP_002077636.1| GD22959 [Drosophila simulans]
gi|194189645|gb|EDX03221.1| GD22959 [Drosophila simulans]
Length = 347
Score = 241 bits (614), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 130/288 (45%), Positives = 172/288 (59%), Gaps = 23/288 (7%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVND 73
PC++G+DEAGRGPVLGPMVYG YCP ++ L L ADSK L E KR+ +F D+ +
Sbjct: 70 PCMLGVDEAGRGPVLGPMVYGISYCPLESKKALEDLGCADSKQLTEGKRDIIFNDINTKE 129
Query: 74 ----SVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 129
VGWAV+II P +S M ++K +LNE+S DSA+GLI + ++ G+ + EVY+DTV
Sbjct: 130 YATSCVGWAVEIISPNTISTSMYRRSKCSLNEVSMDSAMGLIQQAIDAGVNIAEVYVDTV 189
Query: 130 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH 189
G EKYQ KL +RFP+ K V+KKADS YP+VS ASI AKVTRD L+ W F E
Sbjct: 190 GPPEKYQEKLLKRFPNFKITVAKKADSTYPIVSAASICAKVTRDHALKVWSFPEGLVIKD 249
Query: 190 RNFGSGYPGD---------HKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWESDEMDEDVS 240
FGSGYPGD + ++FGFP LVRFSW T + D + E DE D +
Sbjct: 250 NEFGSGYPGDPVTRRFLTEYIDLVFGFPRLVRFSWSTAENALADKAYDM-EFDEPDSE-K 307
Query: 241 SRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 288
+ +G + K F + + E I + C+F + R LE + F
Sbjct: 308 PKYAGTKLTKF----FKGTTKSGEVI----REECRFFKQRHLENVMEF 347
>gi|116806098|emb|CAL26432.1| CG13690 [Drosophila melanogaster]
Length = 347
Score = 241 bits (614), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 131/288 (45%), Positives = 171/288 (59%), Gaps = 23/288 (7%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVND 73
PC++G+DEAGRGPVLGPMVYG YCP + L L ADSK L E KR+ +F D+ +
Sbjct: 70 PCMLGVDEAGRGPVLGPMVYGISYCPLESNKALEDLGCADSKQLTEGKRDIIFNDINTKE 129
Query: 74 ----SVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 129
VGWAV+II P +S M ++K +LNE+S DSA+GLI + ++ G+ + EVY+DTV
Sbjct: 130 YATSCVGWAVEIISPNTISTSMYRRSKCSLNEVSMDSAMGLIQQAIDAGVNIAEVYVDTV 189
Query: 130 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH 189
G EKYQ KL +RFPS K V+KKADS YP+VS ASI AKVTRD L+ W F E
Sbjct: 190 GPPEKYQEKLLKRFPSFKITVAKKADSTYPIVSAASICAKVTRDHALKVWSFPEGLVIKD 249
Query: 190 RNFGSGYPGD---------HKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWESDEMDEDVS 240
FGSGYPGD + ++FGFP LVRFSW T + D + E DE D +
Sbjct: 250 NEFGSGYPGDPVTRRFLTEYIDLVFGFPRLVRFSWSTAENALADKAYDM-EFDEPDSE-K 307
Query: 241 SRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 288
+ +G + K F + + E I + C+F + R LE + F
Sbjct: 308 PKYAGTKLTKF----FKGTTKSGEII----REECRFFKQRHLESVMEF 347
>gi|116806086|emb|CAL26426.1| CG13690 [Drosophila melanogaster]
gi|223967493|emb|CAR93477.1| CG13690-PA [Drosophila melanogaster]
gi|223967499|emb|CAR93480.1| CG13690-PA [Drosophila melanogaster]
gi|223967501|emb|CAR93481.1| CG13690-PA [Drosophila melanogaster]
Length = 347
Score = 241 bits (614), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 131/288 (45%), Positives = 171/288 (59%), Gaps = 23/288 (7%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVND 73
PC++G+DEAGRGPVLGPMVYG YCP + L L ADSK L E KR+ +F D+ +
Sbjct: 70 PCMLGVDEAGRGPVLGPMVYGISYCPLESNKALEDLGCADSKQLTEGKRDIIFNDINTKE 129
Query: 74 ----SVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 129
VGWAV+II P +S M ++K +LNE+S DSA+GLI + ++ G+ + EVY+DTV
Sbjct: 130 YATSCVGWAVEIISPNTISTSMYRRSKCSLNEVSMDSAMGLIQQAIDAGVNIAEVYVDTV 189
Query: 130 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH 189
G EKYQ KL +RFPS K V+KKADS YP+VS ASI AKVTRD L+ W F E
Sbjct: 190 GPPEKYQEKLLKRFPSFKITVAKKADSTYPIVSAASICAKVTRDHALKVWSFPEGLVIKD 249
Query: 190 RNFGSGYPGD---------HKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWESDEMDEDVS 240
FGSGYPGD + ++FGFP LVRFSW T + D + E DE D +
Sbjct: 250 NEFGSGYPGDPVTRRFLTEYIDLVFGFPRLVRFSWSTAENALADKAYDM-EFDEPDSE-K 307
Query: 241 SRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 288
+ +G + K F + + E I + C+F + R LE + F
Sbjct: 308 PKYAGTKLTKF----FKGTTKSGEII----REECRFFKQRHLESVMEF 347
>gi|48762662|ref|NP_956520.2| ribonuclease H2 subunit A [Danio rerio]
gi|47938809|gb|AAH71375.1| Ribonuclease H2, subunit A [Danio rerio]
Length = 307
Score = 241 bits (614), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 130/282 (46%), Positives = 168/282 (59%), Gaps = 17/282 (6%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
C +GIDEAGRGPVLGPMVYG +CP S ++ L L ADSKTL E +RE LF L S
Sbjct: 29 CCLGIDEAGRGPVLGPMVYGICFCPVSRKEDLKNLKVADSKTLTEAERENLFVKLDEAKS 88
Query: 75 -VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAE 133
VGWA+ I+ P +S ML + K NLN +SHD+AIGL+ L+ G+ L EV++DTVG AE
Sbjct: 89 FVGWALQILSPNMISTSMLQRAKYNLNALSHDAAIGLVQYALDSGVQLKEVFVDTVGPAE 148
Query: 134 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG 193
KYQ KLSQRFP ++ V KADSL+P+VS ASI AKV RD ++ W F E ++ ++G
Sbjct: 149 KYQDKLSQRFPGVEVTVRPKADSLFPIVSAASICAKVARDHAVKSWKFAEDLGDVDTDYG 208
Query: 194 SGYPGDHK---------HIIFGFPSLVRFSWGTCTSHFKD-IVEVLWESDEMDEDVSSRR 243
SGYP D K +FG+P VRFSW T + V V W+ DE D +
Sbjct: 209 SGYPNDPKTKSWLLKYLDPVFGYPQFVRFSWSTAQTLLDSKAVTVHWDDDEED----GEK 264
Query: 244 SGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQL 285
+ RQ S + + S + SE + R F RKL+ +
Sbjct: 265 AAARQNNTSVLSYFSRNKPSELTHTRDIHR--FFTERKLKSI 304
>gi|195388322|ref|XP_002052829.1| GJ19740 [Drosophila virilis]
gi|194149286|gb|EDW64984.1| GJ19740 [Drosophila virilis]
Length = 339
Score = 241 bits (614), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 131/288 (45%), Positives = 170/288 (59%), Gaps = 23/288 (7%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKV-- 71
PC++G+DEAGRGPVLGPMVYG YCP + L L ADSK L EEKRE +F DL
Sbjct: 62 PCMLGVDEAGRGPVLGPMVYGISYCPLERKSALVELGCADSKQLTEEKREIIFNDLNTLE 121
Query: 72 --NDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 129
N +GWAV+II P +S+ M + K +LNE+S DSA+GLI ++ G+ + EVY+DTV
Sbjct: 122 YANSCIGWAVEIISPNVISSSMYRRTKCSLNEVSMDSAMGLIQEAIDAGVNIAEVYVDTV 181
Query: 130 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH 189
G EKYQ KL +RFP+ K V+KKADS YP+VS ASI AKVTRD L+ W F E
Sbjct: 182 GPPEKYQEKLLKRFPNFKITVAKKADSTYPIVSAASICAKVTRDHALKVWQFPEGLIIKD 241
Query: 190 RNFGSGYPGD---------HKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWESDEMDEDVS 240
FGSGYPGD + ++FGFP LVRFSW T + D + E DE D +
Sbjct: 242 NAFGSGYPGDPVTKRFLTENIDLVFGFPRLVRFSWSTAENALADKAYDM-EFDEPDSE-K 299
Query: 241 SRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 288
+ +G + K + + + EE C+F + L+ +T F
Sbjct: 300 PKYAGTKLTKFFKGTTKTGEVKREE--------CRFFKQCHLDNVTEF 339
>gi|195147238|ref|XP_002014587.1| GL19264 [Drosophila persimilis]
gi|194106540|gb|EDW28583.1| GL19264 [Drosophila persimilis]
Length = 340
Score = 241 bits (614), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 131/288 (45%), Positives = 172/288 (59%), Gaps = 23/288 (7%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKV-- 71
PC++G+DEAGRGPVLGPMVYG YCP +Q L L ADSK L EEKR+ +F +L
Sbjct: 63 PCMLGVDEAGRGPVLGPMVYGISYCPLESKQALIDLGCADSKQLTEEKRDVIFNELNTLE 122
Query: 72 --NDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 129
N VGWAV+II P +S M + K +LNE+S +SA+GLI + ++ G+ + EVY+DTV
Sbjct: 123 YANSCVGWAVEIISPNVISTSMYRRAKCSLNEVSMESAMGLIQQAIDAGVNIAEVYVDTV 182
Query: 130 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH 189
G EKYQ KL +RFP+ K V+KKADS YP+VS ASI AKVTRD L+ W F E
Sbjct: 183 GPPEKYQEKLLRRFPNFKITVAKKADSTYPIVSAASICAKVTRDHALKVWRFPEGLVIKD 242
Query: 190 RNFGSGYPGD---------HKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWESDEMDEDVS 240
FGSGYPGD H ++FGFP LVRFSW T + + + E DE D ++
Sbjct: 243 NAFGSGYPGDPVTKRFLTEHIDLVFGFPRLVRFSWSTAENALANKAYDM-EFDEPDSEM- 300
Query: 241 SRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 288
+ +G + K F + + E I + C+F + R L + F
Sbjct: 301 PKYAGTKLTKF----FKGTTKDGEVI----REECRFFKQRHLSSVFEF 340
>gi|158297564|ref|XP_317779.3| AGAP007741-PA [Anopheles gambiae str. PEST]
gi|157015256|gb|EAA12465.3| AGAP007741-PA [Anopheles gambiae str. PEST]
Length = 342
Score = 240 bits (613), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 127/274 (46%), Positives = 167/274 (60%), Gaps = 16/274 (5%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVND 73
PC++G+DEAGRGPVLGPMVYG +CP S + L L FADSK L EEKR+++F+++ D
Sbjct: 65 PCMLGVDEAGRGPVLGPMVYGIAFCPLSKKDILKQLGFADSKQLTEEKRDQIFDEMNRKD 124
Query: 74 ----SVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 129
++GWAV+ I P +S ML + K +LNE+S DSAIGLI ++ G+ + EVY+DTV
Sbjct: 125 FAKTALGWAVEAISPNVISMCMLRRTKHSLNEVSMDSAIGLINSAIDAGVNIAEVYVDTV 184
Query: 130 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH 189
G EKYQAKL FP K V+KKADS YP+VS ASI AKVTRD L+ W F E
Sbjct: 185 GPPEKYQAKLKAIFPKFKITVAKKADSTYPIVSAASIAAKVTRDHALKVWKFRERPNEEV 244
Query: 190 RNFGSGYPGDHK--------HIIFGFPSLVRFSWGTCTSHFKDIVEVLWESDEMD-EDVS 240
+FGSGYPGD ++FGFP LVRFSW T + + + DE D +D
Sbjct: 245 TSFGSGYPGDPTTKKFLGEIDLVFGFPRLVRFSWSTAGNALEKKAYDMEFEDETDAKDAE 304
Query: 241 SRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRC 274
G ++L F++SK + + + RC
Sbjct: 305 KASYGSKKLSKY---FATSKNENRKRHEYFRERC 335
>gi|321469942|gb|EFX80920.1| hypothetical protein DAPPUDRAFT_230884 [Daphnia pulex]
Length = 307
Score = 240 bits (613), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 130/243 (53%), Positives = 158/243 (65%), Gaps = 17/243 (6%)
Query: 13 NPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL-KV 71
PC +GIDEAGRGPVLGPMVYG YCP S + L + ADSKTL EE+RE+LF L +
Sbjct: 29 QPCALGIDEAGRGPVLGPMVYGITYCPESRAEELKAIGCADSKTLTEEQREKLFGKLDSL 88
Query: 72 NDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGD 131
D VGWAV++I P + M + K +LNE+SHDSAIGLI + L++ +T V++DTVG
Sbjct: 89 QDFVGWAVEVISPNSICNNMFKRLKHSLNEVSHDSAIGLIRKALSLEANITSVFVDTVGP 148
Query: 132 AEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEET------A 185
EKYQAKLS FP IK VSKKADSL+PVVS ASI AKV RD+ L W F+E+ A
Sbjct: 149 PEKYQAKLSALFPGIKITVSKKADSLFPVVSAASICAKVARDKALSTWKFKESPFISLKA 208
Query: 186 ENMHRNFGSGYPGD-------HKHI--IFGFPSLVRFSWGTCTSHFKDI-VEVLWESDEM 235
E+ +GSGYPGD ++I +FGFP LVRFSW T K V V WE E
Sbjct: 209 ESQELKWGSGYPGDPTTKKFLAQNIDGVFGFPQLVRFSWSTSEQILKTKGVTVEWEDTEE 268
Query: 236 DED 238
E+
Sbjct: 269 QEN 271
>gi|58037175|ref|NP_081463.1| ribonuclease H2 subunit A [Mus musculus]
gi|85541053|sp|Q9CWY8.2|RNH2A_MOUSE RecName: Full=Ribonuclease H2 subunit A; Short=RNase H2 subunit A;
AltName: Full=Ribonuclease HI large subunit; Short=RNase
HI large subunit; AltName: Full=Ribonuclease HI subunit
A
gi|312208159|pdb|3P5J|A Chain A, The Structure Of The Human Rnase H2 Complex Defines Key
Interaction Interfaces Relevant To Enzyme Function And
Human Disease
gi|23273263|gb|AAH38158.1| Ribonuclease H2, large subunit [Mus musculus]
gi|74138850|dbj|BAE27230.1| unnamed protein product [Mus musculus]
Length = 301
Score = 240 bits (613), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 120/244 (49%), Positives = 158/244 (64%), Gaps = 13/244 (5%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVN- 72
PC++G+DEAGRGPVLGPMVY YCP S L L ADSKTL E +RE LF ++ +
Sbjct: 28 PCVLGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLTENERERLFAKMEEDG 87
Query: 73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
D VGWA+D++ P +S ML + K NLN +SHD+A GLI L+ + +T+V++DTVG
Sbjct: 88 DFVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTAAGLIQYALDQNVNVTQVFVDTVGMP 147
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF 192
E YQA+L Q FP I+ V KADSL+PVVS ASI AKV RD+ ++ W F E +++ ++
Sbjct: 148 ETYQARLQQHFPGIEVTVKAKADSLFPVVSAASIFAKVARDKAVKNWQFVENLQDLDSDY 207
Query: 193 GSGYPGD-------HKHI--IFGFPSLVRFSWGTCTSHF-KDIVEVLWESDEMDEDVSSR 242
GSGYP D KH+ +FGFP VRFSW T + K+ +V+WE E +ED
Sbjct: 208 GSGYPNDPKTKAWLRKHVDPVFGFPQFVRFSWSTAQAILEKEAEDVIWEDSEAEED--PE 265
Query: 243 RSGK 246
R GK
Sbjct: 266 RPGK 269
>gi|195118270|ref|XP_002003663.1| GI18036 [Drosophila mojavensis]
gi|193914238|gb|EDW13105.1| GI18036 [Drosophila mojavensis]
Length = 342
Score = 240 bits (612), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 130/288 (45%), Positives = 174/288 (60%), Gaps = 23/288 (7%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKV-- 71
PC++G+DEAGRGPVLGPMVYG YCP + ++ L L ADSK L EEKR+ +F D+
Sbjct: 65 PCMLGVDEAGRGPVLGPMVYGISYCPLNSKEALVELGCADSKQLTEEKRDIIFNDMNTLE 124
Query: 72 --NDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 129
N +GWAV+II P +S M ++K +LNE+S DSA+GLI R ++ G+ + EVY+DTV
Sbjct: 125 YANSCIGWAVEIISPNVISNSMYRRSKCSLNEVSMDSAMGLIQRAIDAGVNIAEVYVDTV 184
Query: 130 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH 189
G EKYQ KL +RFP+ K V+KKADS YP+VS ASI AKVTRD L+ W F E
Sbjct: 185 GPPEKYQEKLLKRFPNFKITVAKKADSTYPIVSAASICAKVTRDHALKVWQFPEGLVIKD 244
Query: 190 RNFGSGYPGD---------HKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWESDEMDEDVS 240
FGSGYPGD + ++FGFP LVRFSW T + D + E DE D +
Sbjct: 245 NAFGSGYPGDPVTKRFLTENIDLVFGFPRLVRFSWSTAENALADKAYEM-EFDEPDTE-K 302
Query: 241 SRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 288
+ +G + K F +S E++ + C+ + L+ +T F
Sbjct: 303 PKYAGTKLTK-----FFKGTTKSGEVK---REECRLFKQCHLDNVTDF 342
>gi|195350095|ref|XP_002041577.1| GM16670 [Drosophila sechellia]
gi|194123350|gb|EDW45393.1| GM16670 [Drosophila sechellia]
Length = 347
Score = 240 bits (612), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 130/288 (45%), Positives = 171/288 (59%), Gaps = 23/288 (7%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVND 73
PC++G+DEAGRGPVLGPMVYG YCP + L L ADSK L E KR+ +F D+ +
Sbjct: 70 PCMLGVDEAGRGPVLGPMVYGISYCPLERNKALEDLGCADSKQLTEGKRDIIFNDINTKE 129
Query: 74 ----SVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 129
VGWAV+II P +S M ++K +LNE+S DSA+GLI + ++ G+ + EVY+DTV
Sbjct: 130 YATSCVGWAVEIISPNTISTSMYRRSKCSLNEVSMDSAMGLIQQAIDAGVNIAEVYVDTV 189
Query: 130 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH 189
G EKYQ KL +RFP+ K V+KKADS YP+VS ASI AKVTRD L+ W F E
Sbjct: 190 GPPEKYQEKLLKRFPNFKITVAKKADSTYPIVSAASICAKVTRDHALKVWSFPEGLVIKD 249
Query: 190 RNFGSGYPGD---------HKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWESDEMDEDVS 240
FGSGYPGD + ++FGFP LVRFSW T + D + E DE D +
Sbjct: 250 NEFGSGYPGDPVTRRFLTEYIDLVFGFPRLVRFSWSTAENALADKAYDM-EFDEPDSE-K 307
Query: 241 SRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 288
+ +G + K F + + E I + C+F + R LE + F
Sbjct: 308 PKYAGTKLTKF----FKGTTKSGEVI----REECRFFKQRHLENVMEF 347
>gi|12845627|dbj|BAB26828.1| unnamed protein product [Mus musculus]
Length = 301
Score = 240 bits (612), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 120/244 (49%), Positives = 158/244 (64%), Gaps = 13/244 (5%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVN- 72
PC++G+DEAGRGPVLGPMVY YCP S L L ADSKTL E +RE LF ++ +
Sbjct: 28 PCVLGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLTENERERLFAKMEEDG 87
Query: 73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
D VGWA+D++ P +S ML + K NLN +SHD+A GLI L+ + +T+V++DTVG
Sbjct: 88 DFVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTAAGLIQYALDRNVNVTQVFVDTVGMP 147
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF 192
E YQA+L Q FP I+ V KADSL+PVVS ASI AKV RD+ ++ W F E +++ ++
Sbjct: 148 ETYQARLQQHFPGIEVTVKAKADSLFPVVSAASIFAKVARDKAVKNWQFVENLQDLDSDY 207
Query: 193 GSGYPGD-------HKHI--IFGFPSLVRFSWGTCTSHF-KDIVEVLWESDEMDEDVSSR 242
GSGYP D KH+ +FGFP VRFSW T + K+ +V+WE E +ED
Sbjct: 208 GSGYPNDPKTKAWLRKHVDPVFGFPQFVRFSWSTAQAILEKEAEDVIWEDSEAEED--PE 265
Query: 243 RSGK 246
R GK
Sbjct: 266 RPGK 269
>gi|157136849|ref|XP_001656938.1| ribonuclease hi large subunit [Aedes aegypti]
gi|108880967|gb|EAT45192.1| AAEL003510-PA [Aedes aegypti]
Length = 335
Score = 240 bits (612), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 117/216 (54%), Positives = 148/216 (68%), Gaps = 13/216 (6%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVND 73
PC++G+DEAGRGPVLGPMVYG +CP + ++ L L FADSK L EEKR+ +F+++ D
Sbjct: 59 PCVLGVDEAGRGPVLGPMVYGIAFCPITKKEVLKKLGFADSKQLTEEKRDVIFDEMNQKD 118
Query: 74 ----SVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 129
S+GWAV++I P ++ ML + K +LNE+S DSAIGLI + + G+ + EVY+DTV
Sbjct: 119 YAVESIGWAVEVIAPNDICMSMLRRTKRSLNEVSMDSAIGLIRKAIEAGVNIAEVYVDTV 178
Query: 130 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH 189
G EKYQAKL Q FP K V+KKADS YP+VS ASI AKV+RD L+ W F E E
Sbjct: 179 GPPEKYQAKLKQIFPKFKITVAKKADSTYPIVSAASICAKVSRDHALKVWSFREGLEP-G 237
Query: 190 RNFGSGYPGD--------HKHIIFGFPSLVRFSWGT 217
NFGSGYPGD ++FGFP LVRFSW T
Sbjct: 238 INFGSGYPGDPVTKNFLGTYDLVFGFPRLVRFSWST 273
>gi|354479535|ref|XP_003501965.1| PREDICTED: ribonuclease H2 subunit A-like [Cricetulus griseus]
Length = 302
Score = 240 bits (612), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 118/236 (50%), Positives = 155/236 (65%), Gaps = 11/236 (4%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVN- 72
PC++G+DEAGRGPVLGPMVY YCP S L L ADSKTL E +RE LF ++ +
Sbjct: 28 PCVLGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLTENERERLFSKMEEDG 87
Query: 73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
D VGWA+DI+ P +S ML + K NLN +SHD+A GLI L+ G+ +T+V++DTVG
Sbjct: 88 DFVGWALDILSPNLISTSMLGRVKYNLNSLSHDTAAGLIQYALDQGVNVTQVFVDTVGMP 147
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF 192
E YQA+L QRFP ++ V KADSL+PVVS ASI AKV RD+ ++ W F E+ +++ ++
Sbjct: 148 ETYQARLQQRFPGMEVTVKAKADSLFPVVSAASIFAKVARDQAVKNWQFVESLQDLDSDY 207
Query: 193 GSGYPGD-------HKHI--IFGFPSLVRFSWGTCTSHFKDIVE-VLWESDEMDED 238
GSGYP D KH+ +FGFP VRFSW T + + E V WE +ED
Sbjct: 208 GSGYPNDPKTKAWLRKHVDPVFGFPQFVRFSWSTAQAILEKEAEGVTWEDSAAEED 263
>gi|198473777|ref|XP_001356439.2| GA12461 [Drosophila pseudoobscura pseudoobscura]
gi|198138103|gb|EAL33503.2| GA12461 [Drosophila pseudoobscura pseudoobscura]
Length = 340
Score = 239 bits (611), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 130/288 (45%), Positives = 171/288 (59%), Gaps = 23/288 (7%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKV-- 71
PC++G+DEAGRGPVLGPMVYG YCP +Q L L ADSK L EEKR+ +F ++
Sbjct: 63 PCMLGVDEAGRGPVLGPMVYGISYCPLESKQALIDLGCADSKQLTEEKRDVIFNEMNTLE 122
Query: 72 --NDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 129
N VGWAV+II P +S M + K +LNE+S +SA+GLI + ++ G+ + EVY+DTV
Sbjct: 123 YANSCVGWAVEIISPNVISTSMYRRAKCSLNEVSMESAMGLIQQAIDAGVNIAEVYVDTV 182
Query: 130 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH 189
G EKYQ KL +RFP+ K V+KKADS YP+VS ASI AKVTRD L+ W F E
Sbjct: 183 GPPEKYQEKLLRRFPNFKITVAKKADSTYPIVSAASICAKVTRDHALKVWRFPEGLVIKD 242
Query: 190 RNFGSGYPGD---------HKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWESDEMDEDVS 240
FGSGYPGD H ++FGFP LVRFSW T + + + E DE D +
Sbjct: 243 NAFGSGYPGDPVTKRFLTEHIDLVFGFPRLVRFSWSTAENALANKAYDM-EFDEPDSE-K 300
Query: 241 SRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 288
+ +G + K F + + E I + C+F + R L + F
Sbjct: 301 PKYAGTKLTKF----FKGTTKDGEVI----REECRFFKQRHLSNVFEF 340
>gi|61557385|ref|NP_001013252.1| ribonuclease H2 subunit A [Rattus norvegicus]
gi|81889649|sp|Q5U209.1|RNH2A_RAT RecName: Full=Ribonuclease H2 subunit A; Short=RNase H2 subunit A;
AltName: Full=Ribonuclease HI large subunit; Short=RNase
HI large subunit; AltName: Full=Ribonuclease HI subunit
A
gi|55562777|gb|AAH86345.1| Rnaseh2a protein [Rattus norvegicus]
gi|55824706|gb|AAH86539.1| Ribonuclease H2, subunit A [Rattus norvegicus]
gi|149037817|gb|EDL92177.1| ribonuclease H2, large subunit, isoform CRA_a [Rattus norvegicus]
gi|149037820|gb|EDL92180.1| ribonuclease H2, large subunit, isoform CRA_a [Rattus norvegicus]
Length = 301
Score = 239 bits (611), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 117/236 (49%), Positives = 154/236 (65%), Gaps = 11/236 (4%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVN- 72
PC++G+DEAGRGPVLGPMVY YCP S L L ADSKTL E +RE LF ++ +
Sbjct: 28 PCVLGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLTENERERLFAKMEEDG 87
Query: 73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
D VGWA+DI+ P +S ML + K NLN +SHD+A GLI ++ + +T+V++DTVG
Sbjct: 88 DFVGWALDILSPNLISTSMLGRVKYNLNSMSHDTAAGLIQHAMDQNVKVTQVFVDTVGMP 147
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF 192
E YQA+L QRFP I+ V KADSL+PVVS ASI+AKV RD+ ++ W F E+ + + ++
Sbjct: 148 ETYQARLQQRFPGIEVTVKAKADSLFPVVSAASIIAKVARDQAVKNWQFVESLQGLDSDY 207
Query: 193 GSGYPGD-------HKHI--IFGFPSLVRFSWGTCTSHF-KDIVEVLWESDEMDED 238
GSGYP D KH+ +FGFP VRFSW T + K+ V WE +ED
Sbjct: 208 GSGYPNDPKTKAWLRKHVDPVFGFPQFVRFSWSTAQAILEKEAESVTWEDSAAEED 263
>gi|116806104|emb|CAL26435.1| CG13690 [Drosophila simulans]
Length = 347
Score = 239 bits (609), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 130/288 (45%), Positives = 171/288 (59%), Gaps = 23/288 (7%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVND 73
PC++G+DEAGRGPVLGPMVYG YCP ++ L L ADSK L E KR+ +F D+ +
Sbjct: 70 PCMLGVDEAGRGPVLGPMVYGISYCPLESKKALEDLGCADSKQLTEGKRDIIFNDINTKE 129
Query: 74 ----SVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 129
VGWAV+II P +S M ++K +LNE+S DSA+GLI + ++ G+ + EVY+DTV
Sbjct: 130 YATSCVGWAVEIISPNTISTSMYRRSKCSLNEVSMDSAMGLIQQAIDAGVNIAEVYVDTV 189
Query: 130 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH 189
G EKYQ KL +RFP+ K V+KKADS YP+VS ASI AKVTRD L+ W F E
Sbjct: 190 GPPEKYQEKLLKRFPNFKITVAKKADSTYPIVSAASICAKVTRDHALKVWSFPEGLVIKD 249
Query: 190 RNFGSGYPGD---------HKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWESDEMDEDVS 240
FGSGYPGD + ++FGFP LVRFSW T + D + E DE D
Sbjct: 250 NEFGSGYPGDPVTRRFLTEYIDLVFGFPRLVRFSWSTAENALADKAYDM-EFDEPDSQ-K 307
Query: 241 SRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 288
+ +G + K F +S E+ + C+F + R LE + F
Sbjct: 308 PKYAGTKLTK-----FFKGTTKSGEVT---REECRFFKQRHLENVMEF 347
>gi|260781395|ref|XP_002585798.1| hypothetical protein BRAFLDRAFT_233701 [Branchiostoma floridae]
gi|229270848|gb|EEN41809.1| hypothetical protein BRAFLDRAFT_233701 [Branchiostoma floridae]
Length = 301
Score = 238 bits (608), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 123/234 (52%), Positives = 153/234 (65%), Gaps = 14/234 (5%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLK-VN 72
PC +GIDEAGRGPVLGPMVYG YCP S Q L + FADSKTL EE+RE+LFE +
Sbjct: 28 PCCLGIDEAGRGPVLGPMVYGICYCPLSGQDRLKDMGFADSKTLTEEQREKLFEAIAGAG 87
Query: 73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
+ +GW + I+ P +S ML ++K NLN +SHD+AIGLI R L+ G+ L EVY+DTVGDA
Sbjct: 88 EFMGWTIHILAPNAISNCMLRRSKYNLNTLSHDTAIGLIQRTLDSGVNLQEVYVDTVGDA 147
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIF--EETAENMHR 190
KYQ KL FP + V+ KAD+ +P+VS ASI AKV RDR ++GW F E+ ++ R
Sbjct: 148 TKYQDKLKGIFPDLDITVTPKADAKFPIVSAASICAKVARDRAVKGWTFFEEKDGNSISR 207
Query: 191 NFGSGYPGDHK---------HIIFGFPSLVRFSWGTCTSHFKD-IVEVLWESDE 234
FGSGYP D + +FGFP VRFSW T + D V V W SDE
Sbjct: 208 KFGSGYPSDPETKKWLASMVEPVFGFPQFVRFSWSTASKILDDKAVPVNW-SDE 260
>gi|397487580|ref|XP_003814870.1| PREDICTED: ribonuclease H2 subunit A [Pan paniscus]
gi|426387370|ref|XP_004060142.1| PREDICTED: ribonuclease H2 subunit A [Gorilla gorilla gorilla]
Length = 299
Score = 238 bits (607), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 117/235 (49%), Positives = 151/235 (64%), Gaps = 11/235 (4%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVND 73
PC++G+DEAGRGPVLGPMVY YCP S L L ADSKTL E +RE LF ++ D
Sbjct: 28 PCVLGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLLESERERLFAKMEDTD 87
Query: 74 SVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAE 133
VGWA+D++ P +S ML + K NLN +SHD+A GLI L+ G+ +T+V++DTVG E
Sbjct: 88 FVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLIQYALDQGVNVTQVFVDTVGMPE 147
Query: 134 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG 193
YQA+L Q FP I+ V KAD+LYPVVS ASI AKV RD+ ++ W F E ++ ++G
Sbjct: 148 TYQARLQQSFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKKWQFVEKLQDSDTDYG 207
Query: 194 SGYPGD---------HKHIIFGFPSLVRFSWGTCTSHF-KDIVEVLWESDEMDED 238
SGYP D H +FGFP VRFSW T + K+ +V+WE D ED
Sbjct: 208 SGYPNDPKTKAWLKEHVEPVFGFPQFVRFSWRTAQTILEKEAEDVIWE-DSASED 261
>gi|344282705|ref|XP_003413113.1| PREDICTED: ribonuclease H2 subunit A-like [Loxodonta africana]
Length = 298
Score = 238 bits (607), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 120/236 (50%), Positives = 155/236 (65%), Gaps = 12/236 (5%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVN- 72
PC++G+DEAGRGPVLGPMVY YCP S L L ADSKTL E +R+ LF +K +
Sbjct: 28 PCVLGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLSESERDRLFAKMKEDR 87
Query: 73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
D VGWA+D++ P +S ML + K NLN +SHD+A GL+ L+ + +T+V++DTVG
Sbjct: 88 DFVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTAAGLVQYALDRSVKVTQVFVDTVGLP 147
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF 192
EKYQ +L QRFP I+ V KAD+LYPVVS ASI AKV RD+ +R W F E +++ ++
Sbjct: 148 EKYQERLQQRFPGIEVTVKAKADALYPVVSAASICAKVARDQAVRSWQFVEKLQDVDADY 207
Query: 193 GSGYPGD-------HKHI--IFGFPSLVRFSWGTCTSHFKDIVE-VLWESDEMDED 238
GSGYP D KH+ IFGFP VRFSW T S ++ E V WE D + ED
Sbjct: 208 GSGYPNDPKTKAWLKKHVEPIFGFPQFVRFSWRTAQSILEEEAEGVTWE-DSLAED 262
>gi|348565231|ref|XP_003468407.1| PREDICTED: ribonuclease H2 subunit A-like [Cavia porcellus]
Length = 298
Score = 237 bits (605), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 116/241 (48%), Positives = 154/241 (63%), Gaps = 11/241 (4%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVN- 72
PC++G+DEAGRGPVLGPMVY YCP S L L ADSKTL E +R+ LF ++ +
Sbjct: 28 PCVLGVDEAGRGPVLGPMVYAICYCPQSRLADLEALKVADSKTLSENERDRLFSKMQEDR 87
Query: 73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
D VGWA+D++ P +S ML + K NLN +SHD+A GLI L+ G+ +T+V++DTVG A
Sbjct: 88 DFVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTASGLIQHALDQGVNVTQVFVDTVGLA 147
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF 192
YQ +L QRFP + V KAD+LYPVVS ASI AKV RD+ ++ W F E +++ ++
Sbjct: 148 ASYQERLQQRFPDVTVTVKAKADALYPVVSAASICAKVARDQAVKSWQFVEKEQDLDADY 207
Query: 193 GSGYPGD---------HKHIIFGFPSLVRFSWGTCTSHFKDIVE-VLWESDEMDEDVSSR 242
GSGYP D H +FGFP LVRFSW T + + E V WE ++E SR
Sbjct: 208 GSGYPNDPKTKAWLRRHVEPVFGFPQLVRFSWRTAQAILETEAENVTWEDSALEEQEGSR 267
Query: 243 R 243
+
Sbjct: 268 K 268
>gi|351711560|gb|EHB14479.1| Ribonuclease H2 subunit A [Heterocephalus glaber]
Length = 298
Score = 237 bits (604), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 117/241 (48%), Positives = 152/241 (63%), Gaps = 11/241 (4%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVN- 72
PC++G+DEAGRGPVLGPMVY YCP S L L ADSKTL E +R+ LF ++ +
Sbjct: 28 PCVLGVDEAGRGPVLGPMVYAICYCPESRLADLEALKVADSKTLSESERDRLFAKMEEDQ 87
Query: 73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
D VGWA+D++ P +S ML + K NLN +SHD+A GLI L+ G+ +T+V++DTVG
Sbjct: 88 DLVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLIQYALDQGVKVTQVFVDTVGLP 147
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF 192
E YQ +L QRFP I V KAD+LYPVVS ASI AKV RD+ ++ W F E +++ ++
Sbjct: 148 EMYQKRLQQRFPEITVTVKAKADALYPVVSAASICAKVARDQAVKSWQFVEKLQDLDADY 207
Query: 193 GSGYPGD---------HKHIIFGFPSLVRFSWGTCTSHFKDIVE-VLWESDEMDEDVSSR 242
GSGYP D H +FGFP LVRFSW T + + E V WE +E R
Sbjct: 208 GSGYPNDPKTKAWLRRHVEPVFGFPQLVRFSWRTAQAILEKEAEGVTWEDSATEEQEGHR 267
Query: 243 R 243
R
Sbjct: 268 R 268
>gi|402904417|ref|XP_003915042.1| PREDICTED: ribonuclease H2 subunit A [Papio anubis]
gi|355703198|gb|EHH29689.1| Ribonuclease H2 subunit A [Macaca mulatta]
gi|380808814|gb|AFE76282.1| ribonuclease H2 subunit A [Macaca mulatta]
gi|383415189|gb|AFH30808.1| ribonuclease H2 subunit A [Macaca mulatta]
gi|384944794|gb|AFI36002.1| ribonuclease H2 subunit A [Macaca mulatta]
Length = 300
Score = 237 bits (604), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 119/241 (49%), Positives = 154/241 (63%), Gaps = 12/241 (4%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVN- 72
PC++G+DEAGRGPVLGPMVY YCP S+ L L ADSKTL E +RE LF ++ N
Sbjct: 28 PCVLGVDEAGRGPVLGPMVYAICYCPLSHLADLEALKVADSKTLLESERERLFAKMEENR 87
Query: 73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
D VGWA+D++ P +S ML + K NLN +SHD+A GLI L+ G+ +T+V++DTVG
Sbjct: 88 DFVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLIQYALDQGVNVTQVFVDTVGMP 147
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF 192
E YQA+L Q FP I+ V KAD+LYPVVS ASI AKV RD+ ++ W F E ++ ++
Sbjct: 148 ETYQARLQQSFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKKWKFVEKLQDSDTDY 207
Query: 193 GSGYPGD---------HKHIIFGFPSLVRFSWGTCTSHF-KDIVEVLWESDEMDEDVSSR 242
GSGYP D H +FGFP VRFSW T + K+ +V+WE D ED
Sbjct: 208 GSGYPNDPKTKAWLKEHVEPVFGFPQFVRFSWRTAQTILEKEAEDVIWE-DSTPEDQEGL 266
Query: 243 R 243
R
Sbjct: 267 R 267
>gi|109123571|ref|XP_001109423.1| PREDICTED: ribonuclease H2 subunit A isoform 2 [Macaca mulatta]
Length = 300
Score = 236 bits (603), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 119/241 (49%), Positives = 154/241 (63%), Gaps = 12/241 (4%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVN- 72
PC++G+DEAGRGPVLGPMVY YCP S+ L L ADSKTL E +RE LF ++ N
Sbjct: 28 PCVLGVDEAGRGPVLGPMVYAICYCPLSHLADLEALKVADSKTLLESERERLFAKMEENR 87
Query: 73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
D VGWA+D++ P +S ML + K NLN +SHD+A GLI L+ G+ +T+V++DTVG
Sbjct: 88 DFVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLIQYALDQGVNVTQVFVDTVGMP 147
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF 192
E YQA+L Q FP I+ V KAD+LYPVVS ASI AKV RD+ ++ W F E ++ ++
Sbjct: 148 ETYQARLQQSFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKKWKFVEKLQDSDTDY 207
Query: 193 GSGYPGD---------HKHIIFGFPSLVRFSWGTCTSHF-KDIVEVLWESDEMDEDVSSR 242
GSGYP D H +FGFP VRFSW T + K+ +V+WE D ED
Sbjct: 208 GSGYPNDPKTKVWLKEHVEPVFGFPQFVRFSWRTAQTILEKEAEDVIWE-DSTPEDQEGL 266
Query: 243 R 243
R
Sbjct: 267 R 267
>gi|38455391|ref|NP_006388.2| ribonuclease H2 subunit A [Homo sapiens]
gi|20981704|sp|O75792.2|RNH2A_HUMAN RecName: Full=Ribonuclease H2 subunit A; Short=RNase H2 subunit A;
AltName: Full=Aicardi-Goutieres syndrome 4 protein;
Short=AGS4; AltName: Full=RNase H(35); AltName:
Full=Ribonuclease HI large subunit; Short=RNase HI large
subunit; AltName: Full=Ribonuclease HI subunit A
gi|15079910|gb|AAH11748.1| Ribonuclease H2, subunit A [Homo sapiens]
gi|119604719|gb|EAW84313.1| ribonuclease H2, large subunit [Homo sapiens]
gi|189067523|dbj|BAG37728.1| unnamed protein product [Homo sapiens]
Length = 299
Score = 236 bits (603), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 113/228 (49%), Positives = 148/228 (64%), Gaps = 10/228 (4%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVND 73
PC++G+DEAGRGPVLGPMVY YCP L L ADSKTL E +RE LF ++ D
Sbjct: 28 PCVLGVDEAGRGPVLGPMVYAICYCPLPRLADLEALKVADSKTLLESERERLFAKMEDTD 87
Query: 74 SVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAE 133
VGWA+D++ P +S ML + K NLN +SHD+A GLI L+ G+ +T+V++DTVG E
Sbjct: 88 FVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLIQYALDQGVNVTQVFVDTVGMPE 147
Query: 134 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG 193
YQA+L Q FP I+ V KAD+LYPVVS ASI AKV RD+ ++ W F E +++ ++G
Sbjct: 148 TYQARLQQSFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKKWQFVEKLQDLDTDYG 207
Query: 194 SGYPGD---------HKHIIFGFPSLVRFSWGTCTSHF-KDIVEVLWE 231
SGYP D H +FGFP VRFSW T + K+ +V+WE
Sbjct: 208 SGYPNDPKTKAWLKEHVEPVFGFPQFVRFSWRTAQTILEKEAEDVIWE 255
>gi|3334761|emb|CAB09725.1| ribonuclease HI large subunit [Homo sapiens]
Length = 299
Score = 236 bits (603), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 113/228 (49%), Positives = 148/228 (64%), Gaps = 10/228 (4%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVND 73
PC++G+DEAGRGPVLGPMVY YCP L L ADSKTL E +RE LF ++ D
Sbjct: 28 PCVLGVDEAGRGPVLGPMVYAICYCPLPRLADLEALKVADSKTLLESERERLFAKMEDTD 87
Query: 74 SVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAE 133
VGWA+D++ P +S ML + K NLN +SHD+A GLI L+ G+ +T+V++DTVG E
Sbjct: 88 FVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLIQYALDQGVNVTQVFVDTVGMPE 147
Query: 134 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG 193
YQA+L Q FP I+ V KAD+LYPVVS ASI AKV RD+ ++ W F E +++ ++G
Sbjct: 148 TYQAQLQQSFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKKWQFVEKLQDLDTDYG 207
Query: 194 SGYPGD---------HKHIIFGFPSLVRFSWGTCTSHF-KDIVEVLWE 231
SGYP D H +FGFP VRFSW T + K+ +V+WE
Sbjct: 208 SGYPNDPKTKAWLKEHVEPVFGFPQFVRFSWRTAQTILEKEAEDVIWE 255
>gi|332252995|ref|XP_003275638.1| PREDICTED: ribonuclease H2 subunit A [Nomascus leucogenys]
Length = 299
Score = 236 bits (602), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 118/240 (49%), Positives = 152/240 (63%), Gaps = 11/240 (4%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVND 73
PC++G+DEAGRGPVLGPMVY YCP S L L ADSKTL E +RE LF ++ D
Sbjct: 28 PCVLGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLLESERERLFAKMEDRD 87
Query: 74 SVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAE 133
VGWA+D++ P +S ML + K NLN +SHD+A GLI L+ G+ +T+V++DTVG E
Sbjct: 88 FVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLIQYALDQGVNVTQVFVDTVGMPE 147
Query: 134 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG 193
YQA L Q FP I+ V KAD+LYPVVS ASI AKV RD+ ++ W F E +++ ++G
Sbjct: 148 TYQAWLQQSFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKKWQFVEKLQDLDTDYG 207
Query: 194 SGYPGD---------HKHIIFGFPSLVRFSWGTCTSHF-KDIVEVLWESDEMDEDVSSRR 243
SGYP D H +FGFP VRFSW T + K+ +V+WE D ED R
Sbjct: 208 SGYPNDPKTKAWLKEHVEPVFGFPQFVRFSWRTAQTILEKEAEDVIWE-DSAPEDQEGLR 266
>gi|315364763|pdb|3PUF|A Chain A, Crystal Structure Of Human Rnase H2 Complex
gi|315364766|pdb|3PUF|D Chain D, Crystal Structure Of Human Rnase H2 Complex
gi|315364769|pdb|3PUF|G Chain G, Crystal Structure Of Human Rnase H2 Complex
gi|315364772|pdb|3PUF|J Chain J, Crystal Structure Of Human Rnase H2 Complex
gi|315364775|pdb|3PUF|M Chain M, Crystal Structure Of Human Rnase H2 Complex
gi|315364778|pdb|3PUF|P Chain P, Crystal Structure Of Human Rnase H2 Complex
Length = 302
Score = 236 bits (602), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 113/228 (49%), Positives = 148/228 (64%), Gaps = 10/228 (4%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVND 73
PC++G+DEAGRGPVLGPMVY YCP L L ADSKTL E +RE LF ++ D
Sbjct: 31 PCVLGVDEAGRGPVLGPMVYAICYCPLPRLADLEALKVADSKTLLESERERLFAKMEDTD 90
Query: 74 SVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAE 133
VGWA+D++ P +S ML + K NLN +SHD+A GLI L+ G+ +T+V++DTVG E
Sbjct: 91 FVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLIQYALDQGVNVTQVFVDTVGMPE 150
Query: 134 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG 193
YQA+L Q FP I+ V KAD+LYPVVS ASI AKV RD+ ++ W F E +++ ++G
Sbjct: 151 TYQARLQQSFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKKWQFVEKLQDLDTDYG 210
Query: 194 SGYPGD---------HKHIIFGFPSLVRFSWGTCTSHF-KDIVEVLWE 231
SGYP D H +FGFP VRFSW T + K+ +V+WE
Sbjct: 211 SGYPNDPKTKAWLKEHVEPVFGFPQFVRFSWRTAQTILEKEAEDVIWE 258
>gi|55648379|ref|XP_512415.1| PREDICTED: ribonuclease H2 subunit A isoform 2 [Pan troglodytes]
gi|410226906|gb|JAA10672.1| ribonuclease H2, subunit A [Pan troglodytes]
gi|410251426|gb|JAA13680.1| ribonuclease H2, subunit A [Pan troglodytes]
gi|410287834|gb|JAA22517.1| ribonuclease H2, subunit A [Pan troglodytes]
gi|410328555|gb|JAA33224.1| ribonuclease H2, subunit A [Pan troglodytes]
Length = 299
Score = 236 bits (601), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 114/228 (50%), Positives = 147/228 (64%), Gaps = 10/228 (4%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVND 73
PC++G+DEAGRGPVLGPMVY YCP S L L ADSKTL E +RE LF ++ D
Sbjct: 28 PCVLGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLLESERERLFAKMEDTD 87
Query: 74 SVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAE 133
VGWA+D++ P +S ML + K NLN +SHD+A GLI L G+ +T+V++DTVG E
Sbjct: 88 FVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLIQYALYQGVNVTQVFVDTVGMPE 147
Query: 134 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG 193
YQA+L Q FP I+ V KAD+LYPVVS ASI AKV RD+ ++ W F E ++ ++G
Sbjct: 148 TYQARLQQSFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKKWQFVEKLQDSDTDYG 207
Query: 194 SGYPGD---------HKHIIFGFPSLVRFSWGTCTSHF-KDIVEVLWE 231
SGYP D H +FGFP VRFSW T + K+ +V+WE
Sbjct: 208 SGYPNDPKTKAWLKEHVEPVFGFPQFVRFSWRTAQTILEKEAEDVIWE 255
>gi|320168268|gb|EFW45167.1| ribonuclease H2 [Capsaspora owczarzaki ATCC 30864]
Length = 385
Score = 235 bits (600), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 118/229 (51%), Positives = 151/229 (65%), Gaps = 12/229 (5%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL-KVN 72
PC +GIDEAGRGPVLGPMVYG YCP S L + F DSK L E R LF+D+ K N
Sbjct: 109 PCCLGIDEAGRGPVLGPMVYGISYCPLSDDPRLRQMGFDDSKKLDEPTRRRLFDDINKAN 168
Query: 73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
D +G++V +I P+++S+ ML + K NLN +SHD+A+ L+ R L+ G+ + +V++DTVG A
Sbjct: 169 DFMGFSVCVISPQDISSSMLRRAKYNLNALSHDTAMSLVQRALDDGVNIAKVFVDTVGTA 228
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEET-AENMHRN 191
E YQ KLS+RFP I+F VS KADSL+P+VS ASI AKV RD L W F E + R+
Sbjct: 229 ETYQEKLSERFPGIEFKVSAKADSLFPIVSAASICAKVVRDHVLDIWQFSEPHGSTIGRD 288
Query: 192 FGSGYPGD---------HKHIIFGFPSLVRFSWGTCTSHFKD-IVEVLW 230
FG GYP D + +FGFP +VRFSWGTC + D V V W
Sbjct: 289 FGCGYPSDPVTKQWLQTNMDSVFGFPGVVRFSWGTCKNILIDRAVNVTW 337
>gi|268612465|pdb|3KIO|A Chain A, Mouse Rnase H2 Complex
Length = 301
Score = 234 bits (598), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 118/244 (48%), Positives = 155/244 (63%), Gaps = 13/244 (5%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVN- 72
PC++G+DEAGRGPVLGP VY YCP S L L ADSKTL E +RE LF + +
Sbjct: 28 PCVLGVDEAGRGPVLGPXVYAICYCPLSRLADLEALKVADSKTLTENERERLFAKXEEDG 87
Query: 73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
D VGWA+D++ P +S L + K NLN +SHD+A GLI L+ + +T+V++DTVG
Sbjct: 88 DFVGWALDVLSPNLISTSXLGRVKYNLNSLSHDTAAGLIQYALDQNVNVTQVFVDTVGXP 147
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF 192
E YQA+L Q FP I+ V KADSL+PVVS ASI AKV RD+ ++ W F E +++ ++
Sbjct: 148 ETYQARLQQHFPGIEVTVKAKADSLFPVVSAASIFAKVARDKAVKNWQFVENLQDLDSDY 207
Query: 193 GSGYPGD-------HKHI--IFGFPSLVRFSWGTCTSHF-KDIVEVLWESDEMDEDVSSR 242
GSGYP D KH+ +FGFP VRFSW T + K+ +V+WE E +ED
Sbjct: 208 GSGYPNDPKTKAWLRKHVDPVFGFPQFVRFSWSTAQAILEKEAEDVIWEDSEAEED--PE 265
Query: 243 RSGK 246
R GK
Sbjct: 266 RPGK 269
>gi|34329831|gb|AAQ64005.1| ribonuclease H2 [Homo sapiens]
Length = 299
Score = 234 bits (598), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 113/228 (49%), Positives = 147/228 (64%), Gaps = 10/228 (4%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVND 73
PC++G+DEAGRGPVLGPMVY YCP L L ADSKTL E +RE LF ++ D
Sbjct: 28 PCVLGVDEAGRGPVLGPMVYAICYCPLPRLADLEALKVADSKTLLESERERLFAKMEDTD 87
Query: 74 SVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAE 133
VGWA+D++ P +S ML K NLN +SHD+A GLI L+ G+ +T+V++DTVG E
Sbjct: 88 FVGWALDVLSPNLISTSMLGWVKYNLNSLSHDTATGLIQYALDQGVNVTQVFVDTVGMPE 147
Query: 134 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG 193
YQA+L Q FP I+ V KAD+LYPVVS ASI AKV RD+ ++ W F E +++ ++G
Sbjct: 148 TYQARLQQSFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKKWQFVEKLQDLDTDYG 207
Query: 194 SGYPGD---------HKHIIFGFPSLVRFSWGTCTSHF-KDIVEVLWE 231
SGYP D H +FGFP VRFSW T + K+ +V+WE
Sbjct: 208 SGYPNDPKTKAWLKEHVEPVFGFPQFVRFSWRTAQTILEKEAEDVIWE 255
>gi|405952554|gb|EKC20351.1| Ribonuclease H2 subunit A [Crassostrea gigas]
Length = 299
Score = 234 bits (597), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 118/230 (51%), Positives = 149/230 (64%), Gaps = 11/230 (4%)
Query: 12 SNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL-K 70
+ PC +GIDEAGRGPVLGPMVYG + P S ++ + FADSKTL EE+RE +FE +
Sbjct: 26 TEPCWLGIDEAGRGPVLGPMVYGICFSPLSLREKFGEMGFADSKTLTEEEREGIFERICA 85
Query: 71 VNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG 130
+D + W V+++ P +S ML+++K NLN ISHD AI L+ R L +G + EVY+DTVG
Sbjct: 86 ASDMMAWIVELLSPTFISNGMLSRSKYNLNAISHDCAIRLVQRALELGANIAEVYVDTVG 145
Query: 131 DAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHR 190
D EKYQAKL FP+I+ V+KKADSLYP+VS ASI AKV RDR L W F+E
Sbjct: 146 DPEKYQAKLRNLFPNIQITVAKKADSLYPIVSAASICAKVCRDRALSKWQFQEKITVHED 205
Query: 191 NFGSGYPGDHK---------HIIFGFPSLVRFSWGTCTSHF-KDIVEVLW 230
+GSGYPGD K +FGFP VRF W T + K V+V W
Sbjct: 206 GYGSGYPGDPKTKRFLSDSMDKVFGFPQFVRFGWSTASVMLQKSAVDVQW 255
>gi|403302260|ref|XP_003941780.1| PREDICTED: ribonuclease H2 subunit A [Saimiri boliviensis
boliviensis]
Length = 300
Score = 234 bits (596), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 116/236 (49%), Positives = 152/236 (64%), Gaps = 12/236 (5%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVN- 72
PC++G+DEAGRGPVLGPMVY YCP S L L ADSKTL E +RE LF ++ +
Sbjct: 28 PCVLGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLSESERERLFAKMQEDG 87
Query: 73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
D VGWA+D++ P +S ML + K NLN +SHD+A GLI L+ G+ +T+V++DTVG
Sbjct: 88 DFVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLIQYALDQGVNVTQVFVDTVGMP 147
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF 192
E YQ +L Q FP I+ V KAD+LYPVVS ASI AKV RD+ ++ W F E +++ ++
Sbjct: 148 ETYQKRLQQSFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKNWQFVEKLQDLDTDY 207
Query: 193 GSGYPGD---------HKHIIFGFPSLVRFSWGTCTSHF-KDIVEVLWESDEMDED 238
GSGYP D H +FGFP VRFSW T + K+ +V+WE D ED
Sbjct: 208 GSGYPNDPKTKVWLKEHVEPVFGFPQFVRFSWRTAQTILEKEAKDVIWE-DSAPED 262
>gi|344244502|gb|EGW00606.1| Ribonuclease H2 subunit A [Cricetulus griseus]
Length = 312
Score = 234 bits (596), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 112/217 (51%), Positives = 147/217 (67%), Gaps = 10/217 (4%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVN- 72
PC++G+DEAGRGPVLGPMVY YCP S L L ADSKTL E +RE LF ++ +
Sbjct: 28 PCVLGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLTENERERLFSKMEEDG 87
Query: 73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
D VGWA+DI+ P +S ML + K NLN +SHD+A GLI L+ G+ +T+V++DTVG
Sbjct: 88 DFVGWALDILSPNLISTSMLGRVKYNLNSLSHDTAAGLIQYALDQGVNVTQVFVDTVGMP 147
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF 192
E YQA+L QRFP ++ V KADSL+PVVS ASI AKV RD+ ++ W F E+ +++ ++
Sbjct: 148 ETYQARLQQRFPGMEVTVKAKADSLFPVVSAASIFAKVARDQAVKNWQFVESLQDLDSDY 207
Query: 193 GSGYPGD-------HKHI--IFGFPSLVRFSWGTCTS 220
GSGYP D KH+ +FGFP VRFSW T +
Sbjct: 208 GSGYPNDPKTKAWLRKHVDPVFGFPQFVRFSWSTAQA 244
>gi|340380420|ref|XP_003388720.1| PREDICTED: ribonuclease H2 subunit A-like [Amphimedon
queenslandica]
Length = 320
Score = 234 bits (596), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 130/297 (43%), Positives = 175/297 (58%), Gaps = 20/297 (6%)
Query: 4 EAALPK-WASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKR 62
++A+P + C+MGIDEAGRGPVLGPMVYG YCP + + L L FADSK L +R
Sbjct: 31 QSAVPTITCQDECLMGIDEAGRGPVLGPMVYGISYCPITKTKDLEKLKFADSKVLSVSQR 90
Query: 63 EELFEDL-KVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILL 121
E+L+ + + N+ +GW I+ P LS ML ++K NLN ISHD+AI LI +VL+ G+ L
Sbjct: 91 EDLYHTITECNEWLGWKACILSPNYLSNCMLRRSKYNLNSISHDTAIDLIRKVLSDGVKL 150
Query: 122 TEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIF 181
TEVY+DTVG E YQ+KL FP +K V+KKADSL+P+VS ASI AKV RD L W F
Sbjct: 151 TEVYVDTVGKPESYQSKLESIFPQLKVTVTKKADSLFPIVSAASICAKVIRDACLTEWKF 210
Query: 182 EETAENMHRNFGSGYPGDHKHI---------IFGFPSLVRFSWGTCTSHFK-DIVEVLWE 231
E + ++FG GY D I +FGFP+LVRFSW T + + + + V W
Sbjct: 211 TEGDDCYSKSFGCGYTSDTTTINWMKDCIDPVFGFPTLVRFSWSTASKMLESNGLLVKWP 270
Query: 232 SDEMDEDVSSRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 288
D+ DE+ ++ I K ++ R ++ E RKLE + HF
Sbjct: 271 DDDEDEE--------QKANCPKISLFFGKAKTNGDGPKPAKRHRYFEERKLEAVDHF 319
>gi|91091718|ref|XP_966789.1| PREDICTED: similar to ribonuclease hi large subunit [Tribolium
castaneum]
gi|270001067|gb|EEZ97514.1| hypothetical protein TcasGA2_TC011359 [Tribolium castaneum]
Length = 306
Score = 234 bits (596), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 113/230 (49%), Positives = 147/230 (63%), Gaps = 9/230 (3%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVND 73
PCI+GIDEAGRGPVLGPMVYG +CP + +L ADSK L EE R+ +F + N
Sbjct: 37 PCILGIDEAGRGPVLGPMVYGTAFCPLNEATLPDSLGCADSKALNEESRDVIFSKICANR 96
Query: 74 SVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAE 133
+GW V++I P + ML++ K +LN++S D+AI LI L G+ L+ VY+DTVG E
Sbjct: 97 KMGWGVEVIAPNSICNSMLSRQKYSLNQVSMDAAINLIKMALKGGVNLSHVYVDTVGPPE 156
Query: 134 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG 193
KYQA L FP++ V+KKADS +P+VS ASI AKVTRD L+GW F E + H FG
Sbjct: 157 KYQAYLKSLFPNVGVTVAKKADSTFPIVSAASICAKVTRDYALKGWGFGEGLQAGHEEFG 216
Query: 194 SGYPGD---------HKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWESDE 234
SGYPGD ++ +FG+P LVRFSW T + K+ V WE +E
Sbjct: 217 SGYPGDPNTKKFLQNYRDPVFGYPHLVRFSWSTASEALKEAYHVDWEENE 266
>gi|346986447|ref|NP_001231373.1| ribonuclease H2 subunit A [Sus scrofa]
Length = 301
Score = 233 bits (595), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 121/259 (46%), Positives = 162/259 (62%), Gaps = 19/259 (7%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVN- 72
PC++G+DEAGRGPVLGPMVY YCP S L L ADSKTL E +R+ LF ++ +
Sbjct: 28 PCVLGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLSESERDRLFAKMEEDG 87
Query: 73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
D VGWA+D++ P +S ML + K NLN +SHD+A GL+ L+ G+ + +V++DTVG
Sbjct: 88 DFVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLVQYALDQGVKVAQVFVDTVGLP 147
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF 192
E YQ +L QRFP I+ V KAD+LYPVVS ASI AKV RD+ +R W F E +++ ++
Sbjct: 148 ETYQERLQQRFPDIEVTVKAKADALYPVVSAASICAKVARDQAVRNWQFVEKLQDLDTDY 207
Query: 193 GSGYPGD-------HKHI--IFGFPSLVRFSWGTCTSHF-KDIVEVLWESDEMDEDVSSR 242
GSGYP D KH+ +FGFP VRFSW T S K+ +V WE + +
Sbjct: 208 GSGYPNDPKTKAWLRKHVDPVFGFPQFVRFSWRTAQSILEKEAEDVTWEDSQTGD----- 262
Query: 243 RSGKRQLKLSDIGFSSSKR 261
+ G R++K FS S R
Sbjct: 263 QEGLRKIKSY---FSKSPR 278
>gi|48145799|emb|CAG33122.1| JUNB [Homo sapiens]
Length = 299
Score = 233 bits (595), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 112/228 (49%), Positives = 147/228 (64%), Gaps = 10/228 (4%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVND 73
PC++G+DEAGRGPVLGPMVY YCP L L ADSKTL E +RE LF ++ D
Sbjct: 28 PCVLGVDEAGRGPVLGPMVYAICYCPLPRLADLEALKVADSKTLLESERERLFAKMEDTD 87
Query: 74 SVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAE 133
VGWA+D++ P +S ML + K NLN +SHD+A GLI L+ G+ +T+V++DTVG E
Sbjct: 88 FVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLIQYALDQGVNVTQVFVDTVGMPE 147
Query: 134 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG 193
YQA+L Q FP I+ V KAD+LYPVVS ASI AKV RD+ ++ W F E +++ ++G
Sbjct: 148 TYQARLQQSFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKKWQFVEKLQDLDTDYG 207
Query: 194 SGYPGD---------HKHIIFGFPSLVRFSWGTCTSHF-KDIVEVLWE 231
SGYP D H +FGFP VRFSW T + K+ + +WE
Sbjct: 208 SGYPNDPKTKAWLKEHVEPVFGFPQFVRFSWRTAQTILEKEAEDGIWE 255
>gi|89268632|emb|CAJ82403.1| ribonuclease H2, large subunit [Xenopus (Silurana) tropicalis]
Length = 301
Score = 233 bits (594), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 127/284 (44%), Positives = 166/284 (58%), Gaps = 21/284 (7%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLK-VND 73
C +GIDEAGRGPVLGPMVYG YCP + ++ L L ADSKTL E +RE LFE L +D
Sbjct: 29 CCLGIDEAGRGPVLGPMVYGICYCPVARKKDLQDLKVADSKTLSEAERERLFEKLNSTSD 88
Query: 74 SVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAE 133
+GWA+ I+ P +S M + K NLN +SHD+AIGLI L+ G+ L EV+LDTVG AE
Sbjct: 89 YIGWALHILSPNIISTSMQQRAKYNLNALSHDTAIGLIQFALDAGVQLKEVFLDTVGPAE 148
Query: 134 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG 193
KYQ KL + FP + V KADSL+PVVS ASI AKV RDR ++ W F E + +G
Sbjct: 149 KYQDKLKKIFPELDVTVRPKADSLFPVVSAASICAKVARDRVVKDWKFVEDLGDPDAEYG 208
Query: 194 SGYPGD---------HKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWESDEMDEDVSSRRS 244
SGYP D H +FG+P VRFSW T + + + DE D+ S
Sbjct: 209 SGYPNDPKTKDWLSRHLDPVFGYPQFVRFSWSTTQTILGNKAAPVSWGDEDDD------S 262
Query: 245 GKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 288
G + S + F S+ + + + +S +F + R L+ L F
Sbjct: 263 GGKSSTPSVLSFFSAPKDASQPQSH-----RFFQERNLKPLLEF 301
>gi|301771221|ref|XP_002921051.1| PREDICTED: ribonuclease H2 subunit A-like [Ailuropoda melanoleuca]
gi|281353030|gb|EFB28614.1| hypothetical protein PANDA_009861 [Ailuropoda melanoleuca]
Length = 299
Score = 233 bits (593), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 114/229 (49%), Positives = 151/229 (65%), Gaps = 11/229 (4%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVN- 72
PC++G+DEAGRGPVLGPMVY YCP S L L ADSKTL E +R+ LF ++ +
Sbjct: 28 PCVLGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLSESERDRLFVKMEEDG 87
Query: 73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
D VGWA+D++ P +S ML + K NLN +SHD+A GL+ L+ G+ + +V++DTVG
Sbjct: 88 DFVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLVQYALDQGVKVAQVFVDTVGPP 147
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF 192
E YQ +L +RFP I+ V KAD+LYPVVS ASI AKV RD+ ++ W F ET +++ ++
Sbjct: 148 ETYQERLQERFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKNWHFVETLQDLDADY 207
Query: 193 GSGYPGD-------HKHI--IFGFPSLVRFSWGTCTSHFKDIVE-VLWE 231
GSGYP D KH+ +FGFP VRFSW T S + E VLWE
Sbjct: 208 GSGYPNDPKTKVWLRKHVEPVFGFPQFVRFSWRTAQSILEKEAEGVLWE 256
>gi|45361019|ref|NP_989146.1| ribonuclease H2, subunit A [Xenopus (Silurana) tropicalis]
gi|38494390|gb|AAH61614.1| ribonuclease H2, large subunit [Xenopus (Silurana) tropicalis]
Length = 301
Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 127/284 (44%), Positives = 166/284 (58%), Gaps = 21/284 (7%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLK-VND 73
C +GIDEAGRGPVLGPMVYG YCP + ++ L L ADSKTL E +RE LFE L +D
Sbjct: 29 CCLGIDEAGRGPVLGPMVYGICYCPVARKKDLQDLKVADSKTLSEAERERLFEKLNSTSD 88
Query: 74 SVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAE 133
+GWA+ I+ P +S M + K NLN +SHD+AIGLI L+ G+ L EV+LDTVG AE
Sbjct: 89 YIGWALHILSPNIISTSMQQRAKYNLNALSHDTAIGLIQFALDAGVQLKEVFLDTVGPAE 148
Query: 134 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG 193
KYQ KL + FP + V KADSL+PVVS ASI AKV RDR ++ W F E + +G
Sbjct: 149 KYQDKLKKIFPELDVTVRPKADSLFPVVSAASICAKVARDRVVKEWKFVEDLGDPDAEYG 208
Query: 194 SGYPGD---------HKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWESDEMDEDVSSRRS 244
SGYP D H +FG+P VRFSW T + + + DE D+ S
Sbjct: 209 SGYPNDPKTKDWLSRHLDPVFGYPQFVRFSWSTTQTILGNKAAPVSWGDEDDD------S 262
Query: 245 GKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 288
G + S + F S+ + + + +S +F + R L+ L F
Sbjct: 263 GGKSSTPSVLSFFSAPKDASQPQSH-----RFFQERNLKPLLEF 301
>gi|194213064|ref|XP_001495257.2| PREDICTED: ribonuclease H2 subunit A-like [Equus caballus]
Length = 299
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 116/237 (48%), Positives = 151/237 (63%), Gaps = 12/237 (5%)
Query: 13 NPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVN 72
PC +G+DEAGRGPVLGPMVY YCP S L L ADSKTL E +R+ LF +K +
Sbjct: 27 QPCALGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLSESERDRLFARMKED 86
Query: 73 -DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGD 131
D VGWA+D++ P +S ML + K NLN +SHD+A GL+ L+ G+ + +V++DTVG
Sbjct: 87 GDFVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTAAGLVQYALDQGVKVAQVFVDTVGM 146
Query: 132 AEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRN 191
E YQ +L QRFP I+ V KADSLYPVVS ASI AKV RD+ ++ W F E ++ +
Sbjct: 147 PETYQQRLQQRFPGIEVTVKAKADSLYPVVSAASICAKVARDQAVKNWKFVEKLQDSDTD 206
Query: 192 FGSGYPGD---------HKHIIFGFPSLVRFSWGTCTSHF-KDIVEVLWESDEMDED 238
+GSGYP D H +FGFP VRFSW T S K+ +V+W+ D + ED
Sbjct: 207 YGSGYPNDPKTKAWLRRHVEPVFGFPQFVRFSWRTAQSILEKEAEDVVWD-DSVAED 262
>gi|426228912|ref|XP_004008539.1| PREDICTED: ribonuclease H2 subunit A [Ovis aries]
Length = 299
Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 116/243 (47%), Positives = 153/243 (62%), Gaps = 11/243 (4%)
Query: 3 SEAALPKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKR 62
S P PC++G+DEAGRGPVLGPMVY YCP S + L L ADSKTL E +R
Sbjct: 17 SSPVPPVCLKEPCVLGVDEAGRGPVLGPMVYAICYCPLSRLEDLEALKVADSKTLSESER 76
Query: 63 EELFEDLKVN-DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILL 121
+ LF ++ + D VGWA+D++ P +S ML + K NLN +SHD+A GL+ L+ G+ +
Sbjct: 77 DRLFAKMEEDGDFVGWALDVLSPNLISTSMLGRVKYNLNALSHDTATGLVQFALDQGVNV 136
Query: 122 TEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIF 181
+V++DTVG E YQ +L QRFP I+ V KAD+LYPVVS ASI AKV RD+ ++ W F
Sbjct: 137 AQVFVDTVGLPETYQERLQQRFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKNWKF 196
Query: 182 EETAENMHRNFGSGYPGD-------HKHI--IFGFPSLVRFSWGTCTSHFKDIVE-VLWE 231
E +++ ++GSGYP D KH+ +FGFP VRFSW T S + E V WE
Sbjct: 197 VEKLQDLDTDYGSGYPNDPKTKAWLRKHVDPVFGFPQFVRFSWRTAQSILETEAEDVKWE 256
Query: 232 SDE 234
E
Sbjct: 257 DSE 259
>gi|301171214|ref|NP_001180335.1| ribonuclease H2, subunit A [Xenopus laevis]
gi|71051192|gb|AAH99334.1| Unknown (protein for MGC:116529) [Xenopus laevis]
Length = 302
Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 126/284 (44%), Positives = 162/284 (57%), Gaps = 20/284 (7%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLK-VND 73
C +GIDEAGRGPVLGPMVYG YCP + ++ L ADSKTL E RE LFE L +D
Sbjct: 29 CCLGIDEAGRGPVLGPMVYGICYCPVARKKDLQDSKVADSKTLSEADRERLFEKLNGSSD 88
Query: 74 SVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAE 133
+GWA+ I+ P +S M + K NLN +SHD+AIGLI L+ G+ LTEV++DTVG AE
Sbjct: 89 YIGWALHILSPNVISTSMQQRAKYNLNALSHDTAIGLIQFALDAGVQLTEVFVDTVGPAE 148
Query: 134 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG 193
KYQ KL + FP + V KADSL+PVVS ASI AKV RDR ++ W F E + ++G
Sbjct: 149 KYQEKLKKIFPELDVTVRPKADSLFPVVSAASICAKVARDRVVKDWKFVEDLGELDADYG 208
Query: 194 SGYPGD---------HKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWESDEMDEDVSSRRS 244
SGYP D H +FG+P VRFSW T + + + DE D+ + S
Sbjct: 209 SGYPNDPKTKEWLSRHLDPVFGYPQFVRFSWSTAQTILDNKATPVAWGDEDDDSAGGKSS 268
Query: 245 GKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 288
L FS+ K S+ +F + R L+ L F
Sbjct: 269 TPSVLSF----FSAPKDVSQPQSH------RFFQERHLQPLLEF 302
>gi|84370099|ref|NP_001033623.1| ribonuclease H2 subunit A [Bos taurus]
gi|110816412|sp|Q2TBT5.1|RNH2A_BOVIN RecName: Full=Ribonuclease H2 subunit A; Short=RNase H2 subunit A;
AltName: Full=Ribonuclease HI large subunit; Short=RNase
HI large subunit; AltName: Full=Ribonuclease HI subunit
A
gi|83638655|gb|AAI09683.1| Ribonuclease H2, subunit A [Bos taurus]
gi|296485915|tpg|DAA28030.1| TPA: ribonuclease H2 subunit A [Bos taurus]
gi|440902072|gb|ELR52915.1| Ribonuclease H2 subunit A [Bos grunniens mutus]
Length = 299
Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 116/243 (47%), Positives = 153/243 (62%), Gaps = 11/243 (4%)
Query: 3 SEAALPKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKR 62
S P PC++G+DEAGRGPVLGPMVY YCP S + L L ADSKTL E +R
Sbjct: 17 SSPVPPVCLKEPCVLGVDEAGRGPVLGPMVYAICYCPLSRLEDLEALKVADSKTLSESER 76
Query: 63 EELFEDLKVN-DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILL 121
+ LF ++ + D VGWA+D++ P +S ML + K NLN +SHD+A GL+ L+ G+ +
Sbjct: 77 DRLFAKMEEDGDFVGWALDVLSPNLISTSMLGRVKYNLNALSHDTATGLVQFALDQGVNV 136
Query: 122 TEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIF 181
+V++DTVG E YQ +L QRFP I+ V KAD+LYPVVS ASI AKV RD+ ++ W F
Sbjct: 137 AQVFVDTVGLPETYQERLQQRFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKNWKF 196
Query: 182 EETAENMHRNFGSGYPGD-------HKHI--IFGFPSLVRFSWGTCTSHFKDIVE-VLWE 231
E +++ ++GSGYP D KH+ +FGFP VRFSW T S + E V WE
Sbjct: 197 VEKLQDLDTDYGSGYPNDPKTKAWLRKHVDPVFGFPQFVRFSWRTAQSILESEAEDVKWE 256
Query: 232 SDE 234
E
Sbjct: 257 DSE 259
>gi|49115760|gb|AAH73515.1| LOC443655 protein, partial [Xenopus laevis]
Length = 305
Score = 231 bits (589), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 126/284 (44%), Positives = 162/284 (57%), Gaps = 20/284 (7%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLK-VND 73
C +GIDEAGRGPVLGPMVYG YCP + ++ L ADSKTL E RE LFE L +D
Sbjct: 32 CCLGIDEAGRGPVLGPMVYGICYCPVARKKDLQDSKVADSKTLSEADRERLFEKLNGSSD 91
Query: 74 SVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAE 133
+GWA+ I+ P +S M + K NLN +SHD+AIGLI L+ G+ LTEV++DTVG AE
Sbjct: 92 YIGWALHILSPNIISTSMQQRAKYNLNALSHDTAIGLIQFALDAGVQLTEVFVDTVGPAE 151
Query: 134 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG 193
KYQ KL + FP + V KADSL+PVVS ASI AKV RDR ++ W F E + ++G
Sbjct: 152 KYQEKLKKIFPELDVTVRPKADSLFPVVSAASICAKVARDRVVKDWKFVEDLGELDADYG 211
Query: 194 SGYPGD---------HKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWESDEMDEDVSSRRS 244
SGYP D H +FG+P VRFSW T + + + DE D+ + S
Sbjct: 212 SGYPNDPKTKEWLSRHLDPVFGYPQFVRFSWSTAQTILDNKATPVAWGDEDDDSAGGKSS 271
Query: 245 GKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 288
L FS+ K S+ +F + R L+ L F
Sbjct: 272 TPSVLSF----FSAPKDVSQPQSH------RFFQERHLQPLLEF 305
>gi|312208153|pdb|3P56|A Chain A, The Structure Of The Human Rnase H2 Complex Defines Key
Interaction Interfaces Relevant To Enzyme Function And
Human Disease
gi|312208156|pdb|3P56|D Chain D, The Structure Of The Human Rnase H2 Complex Defines Key
Interaction Interfaces Relevant To Enzyme Function And
Human Disease
Length = 299
Score = 231 bits (588), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 111/228 (48%), Positives = 146/228 (64%), Gaps = 10/228 (4%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVND 73
PC++G+ EAGRGPVLGPMVY YCP L L ADSKTL E +RE LF ++ D
Sbjct: 28 PCVLGVAEAGRGPVLGPMVYAICYCPLPRLADLEALKVADSKTLLESERERLFAKMEDTD 87
Query: 74 SVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAE 133
VGWA+D++ P +S ML + K NLN +SHD+A GLI L+ G+ +T+V++DTVG E
Sbjct: 88 FVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLIQYALDQGVNVTQVFVDTVGMPE 147
Query: 134 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG 193
YQA+L Q FP I+ V KA +LYPVVS ASI AKV RD+ ++ W F E +++ ++G
Sbjct: 148 TYQARLQQSFPGIEVTVKAKAAALYPVVSAASICAKVARDQAVKKWQFVEKLQDLDTDYG 207
Query: 194 SGYPGD---------HKHIIFGFPSLVRFSWGTCTSHF-KDIVEVLWE 231
SGYP D H +FGFP VRFSW T + K+ +V+WE
Sbjct: 208 SGYPNDPKTKAWLKEHVEPVFGFPQFVRFSWRTAQTILEKEAEDVIWE 255
>gi|357625234|gb|EHJ75743.1| hypothetical protein KGM_02725 [Danaus plexippus]
Length = 276
Score = 230 bits (587), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 128/286 (44%), Positives = 173/286 (60%), Gaps = 24/286 (8%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL----KV 71
++G+DEAGRGPVLGPMVYG YCP + + L +L ADSK L EEKR+E+F + +
Sbjct: 1 MLGVDEAGRGPVLGPMVYGIAYCPINQNKVLESLGCADSKALTEEKRDEIFLKMLTEKEA 60
Query: 72 NDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGD 131
D+VGW ++I P +S M + K +LNE+S +SAI LI + + +G +TEVY+DTVG
Sbjct: 61 VDNVGWMAEVISPNYISNSMYKRAKHSLNEVSMNSAISLIKKTIELGGNITEVYVDTVGP 120
Query: 132 AEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRN 191
EKYQA+L + FP IK V+KKADS+YP+VS ASIVAKVTRD L+ W F E E H++
Sbjct: 121 PEKYQARLKEIFPDIKITVAKKADSIYPIVSAASIVAKVTRDHALKVWEFPEGLEINHKD 180
Query: 192 FGSGYPGD---HKHI------IFGFPSLVRFSWGTCTSHFKDIVEVLWESDEMDEDVSSR 242
FGSGYPGD K I IFG+P LVRFSW T ++ +++D++ + +
Sbjct: 181 FGSGYPGDPLTKKFIREQIDRIFGYPLLVRFSWSTAELALQERA-AKCSFEDIDDENTKK 239
Query: 243 RSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 288
G + + F S K + + R KF E R L F
Sbjct: 240 PKGTQAIS----SFFSPKNERK------RKRHKFFEERNLTMSNAF 275
>gi|359322070|ref|XP_003639769.1| PREDICTED: ribonuclease H2 subunit A-like [Canis lupus familiaris]
Length = 299
Score = 230 bits (587), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 114/229 (49%), Positives = 149/229 (65%), Gaps = 11/229 (4%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL-KVN 72
PC++G+DEAGRGPVLGPMVY YCP S L L ADSKTL E +R+ LF + K
Sbjct: 28 PCVLGVDEAGRGPVLGPMVYAICYCPLSRLGDLEALKVADSKTLSESERDRLFVKMEKDR 87
Query: 73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
D VGWA+D++ P +S ML + K NLN +SHD+A GL+ L+ G+ + +V++DTVG
Sbjct: 88 DFVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLVQYALDQGVKVAQVFVDTVGLP 147
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF 192
E YQ +L QRFP I+ V KAD+LYPVVS ASI AKV RD+ ++ W F E +++ ++
Sbjct: 148 ETYQERLQQRFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKSWHFVEKLQDLDADY 207
Query: 193 GSGYPGD-------HKHI--IFGFPSLVRFSWGTCTSHFKDIVE-VLWE 231
GSGYP D KH+ +FGFP VRFSW T S + E V+WE
Sbjct: 208 GSGYPNDPKTKAWLRKHVEPVFGFPQFVRFSWRTAQSILEKEAEGVIWE 256
>gi|198428317|ref|XP_002127465.1| PREDICTED: similar to ribonuclease H2, large subunit [Ciona
intestinalis]
Length = 292
Score = 230 bits (586), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 132/294 (44%), Positives = 172/294 (58%), Gaps = 33/294 (11%)
Query: 7 LPKW-ASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREEL 65
+PK S PC +GIDEAGRGPVLGPMVY + P S + LA L DSK LKEE+RE L
Sbjct: 20 IPKLLTSEPCCLGIDEAGRGPVLGPMVYASCFTPISCKDKLAGLGCDDSKVLKEEQRESL 79
Query: 66 FEDL-KVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEV 124
FE L K ++ +GW + I+ P +S ML ++K NLN ISHD+AI LI L +G+ +TEV
Sbjct: 80 FETLNKASEYIGWMIHILSPAYISTSMLGRSKYNLNSISHDTAIDLIRSALKLGVEVTEV 139
Query: 125 YLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEET 184
Y+DTVG + Y KL + FPSIKF V KKADS YPVVS ASI AKV RD+ ++ W F E
Sbjct: 140 YVDTVGPPQTYAEKLKKIFPSIKFTVEKKADSKYPVVSAASICAKVCRDKAVKEWRFREN 199
Query: 185 AENMHRNFGSGYPGD---------HKHIIFGFPSLVRFSWGTCTSHFKD-IVEVLWESDE 234
+ + +GSGYP D + IFGFPS VRFSW T + ++ V V W D
Sbjct: 200 PDTDTK-YGSGYPADPVTKVWLRNNVDRIFGFPSFVRFSWSTTSKLLENEAVPVHWADD- 257
Query: 235 MDEDVSSRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 288
DE+ SS++ + G R +F K++++T+F
Sbjct: 258 -DEE------------------SSNEPITSYFSKKGNSRHQFFTENKMKRVTNF 292
>gi|170049569|ref|XP_001857534.1| ribonuclease H2 subunit A [Culex quinquefasciatus]
gi|167871354|gb|EDS34737.1| ribonuclease H2 subunit A [Culex quinquefasciatus]
Length = 334
Score = 230 bits (586), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 115/219 (52%), Positives = 148/219 (67%), Gaps = 13/219 (5%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVND 73
PC++G+DEAGRGPVLGPMVYG + P + L L FADSK L EEKRE +F+++ D
Sbjct: 58 PCVLGVDEAGRGPVLGPMVYGIAFSPIDKKDVLKKLGFADSKQLTEEKREHIFDEMNKQD 117
Query: 74 ----SVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 129
S+GWAV++I P ++S ML ++K +LNE+S DSAIGLI + + G+ + EVY+DTV
Sbjct: 118 FATESIGWAVEVISPNDISMSMLRRSKRSLNEVSMDSAIGLIHKAIEAGVNIAEVYVDTV 177
Query: 130 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH 189
G EKYQAKL FP+ K V+KKADS Y +VS ASI AKV+RD L+ W F E +
Sbjct: 178 GPPEKYQAKLKLIFPNFKITVAKKADSTYLIVSAASICAKVSRDHALKVWKFRE-GTDPE 236
Query: 190 RNFGSGYPGD---HKHI-----IFGFPSLVRFSWGTCTS 220
FGSGYPGD K + +FGFP LVRFSW T ++
Sbjct: 237 VKFGSGYPGDPVTKKFLGDFDRVFGFPRLVRFSWSTASN 275
>gi|116284049|gb|AAH29252.1| Rnaseh2a protein [Mus musculus]
Length = 254
Score = 229 bits (585), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 110/217 (50%), Positives = 144/217 (66%), Gaps = 10/217 (4%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVN- 72
PC++G+DEAGRGPVLGPMVY YCP S L L ADSKTL E +RE LF ++ +
Sbjct: 28 PCVLGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLTENERERLFAKMEEDG 87
Query: 73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
D VGWA+D++ P +S ML + K NLN +SHD+A GLI L+ + +T+V++DTVG
Sbjct: 88 DFVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTAAGLIQYALDQNVNVTQVFVDTVGMP 147
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF 192
E YQA+L Q FP I+ V KADSL+PVVS ASI AKV RD+ ++ W F E +++ ++
Sbjct: 148 ETYQARLQQHFPGIEVTVKAKADSLFPVVSAASIFAKVARDKAVKNWQFVENLQDLDSDY 207
Query: 193 GSGYPGD-------HKHI--IFGFPSLVRFSWGTCTS 220
GSGYP D KH+ +FGFP VRFSW T +
Sbjct: 208 GSGYPNDPKTKAWLRKHVDPVFGFPQFVRFSWSTAQA 244
>gi|355716672|gb|AES05686.1| ribonuclease H2, subunit A [Mustela putorius furo]
Length = 299
Score = 229 bits (585), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 114/229 (49%), Positives = 148/229 (64%), Gaps = 11/229 (4%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVN- 72
PC +G+DEAGRGPVLGPMVY YCP S L L ADSKTL E +R+ LF ++ +
Sbjct: 28 PCALGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLSESERDRLFVKMEEDG 87
Query: 73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
D VGWA+D++ P +S ML + K NLN +SHD+AIGL+ L+ G+ + +V++DTVG
Sbjct: 88 DFVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTAIGLVQYALDQGVKVAQVFVDTVGPP 147
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF 192
E YQ +L Q FP I+ V KAD+LYPVVS ASI AKV RD+ ++ W F E + + ++
Sbjct: 148 ETYQEQLQQHFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKNWHFVEDLQGLDADY 207
Query: 193 GSGYPGD-------HKHI--IFGFPSLVRFSWGTCTSHFKDIVE-VLWE 231
GSGYP D KH+ +FGFP VRFSW T S + E VLWE
Sbjct: 208 GSGYPNDPKTKAWLRKHVEPVFGFPQFVRFSWRTAQSILETEAEGVLWE 256
>gi|410950548|ref|XP_003981966.1| PREDICTED: ribonuclease H2 subunit A [Felis catus]
Length = 299
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 113/229 (49%), Positives = 149/229 (65%), Gaps = 11/229 (4%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVN- 72
PCI+G+DEAGRGPVLGPMVY YCP S L L ADSKTL E +R+ LF ++ +
Sbjct: 28 PCILGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLSESERDRLFVKMQEDG 87
Query: 73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
D VGWA+D++ P +S ML + K NLN +SHD+A GL+ L+ G+ + +V++DTVG
Sbjct: 88 DFVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLVQFALDQGVKVAQVFVDTVGLP 147
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF 192
+ YQ +L QRFP I+ V KAD+LYPVVS ASI AKV RD+ ++ W F E + + ++
Sbjct: 148 DTYQERLQQRFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKNWHFVEKLQGLDADY 207
Query: 193 GSGYPGD-------HKHI--IFGFPSLVRFSWGTCTSHFKDIVE-VLWE 231
GSGYP D KH+ +FGFP VRFSW T S + E V+WE
Sbjct: 208 GSGYPNDPKTKAWLRKHVEPVFGFPQFVRFSWRTAQSILEKEAEGVMWE 256
>gi|193709059|ref|XP_001946925.1| PREDICTED: ribonuclease H2 subunit A-like [Acyrthosiphon pisum]
Length = 312
Score = 229 bits (583), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 121/226 (53%), Positives = 154/226 (68%), Gaps = 12/226 (5%)
Query: 4 EAALPKWASN-PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKR 62
E+ LP+ + CI+GIDEAGRGPVLGPMVYG YC Q L TL ADSK L E+ R
Sbjct: 30 ESDLPESTTTEKCILGIDEAGRGPVLGPMVYGTSYCSVDNQAILKTLGCADSKVLSEQAR 89
Query: 63 EELFEDL-KVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILL 121
+++F+ + K ++ +GWAV II P +S + K +LNEISH++AIGLI RVL+ G+ +
Sbjct: 90 DDIFDGITKQSEILGWAVHIISPTTISNCSFRRQKCSLNEISHNAAIGLIQRVLDRGVNI 149
Query: 122 TEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIF 181
EV++DTVG EKYQ KL FP +K VSKKADSL+P+VS ASI AKVTRD L+ W F
Sbjct: 150 CEVFVDTVGPPEKYQEKLLSIFPQLKITVSKKADSLFPIVSAASICAKVTRDAALKNWKF 209
Query: 182 -EETAENMHRNFGSGYPGD-------HKHI--IFGFPSLVRFSWGT 217
E E++ N+GSGYP D K+I +FGFPS+VRFSW T
Sbjct: 210 IERPGEDIDSNWGSGYPNDPVTKEYLKKNIDPVFGFPSIVRFSWST 255
>gi|432095927|gb|ELK26843.1| Ribonuclease H2 subunit A [Myotis davidii]
Length = 299
Score = 229 bits (583), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 112/229 (48%), Positives = 147/229 (64%), Gaps = 11/229 (4%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVN- 72
PC++G+DEAGRGPVLGPMVY YCP S L L ADSKTL E +R+ LF ++ +
Sbjct: 28 PCVLGVDEAGRGPVLGPMVYAICYCPMSRLADLEALKVADSKTLSESERDRLFAKMEEDG 87
Query: 73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
D VGWA+D++ P +S ML + K NLN +SHD+A GL+ L+ G+ + +V++DTVG
Sbjct: 88 DFVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTAAGLVQYALDQGVNVAQVFVDTVGMP 147
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF 192
E YQ +L QRFP I+ V KAD+LYPVVS ASI AKV RD+ ++ W F E +++ ++
Sbjct: 148 ETYQERLQQRFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKNWQFVEKLQDLDTDY 207
Query: 193 GSGYPGDHK---------HIIFGFPSLVRFSWGTCTSHFKDIVE-VLWE 231
GSGYP D K +FGFP VRFSW T S + E V WE
Sbjct: 208 GSGYPNDPKTKAWLRKNVEPVFGFPQFVRFSWRTAQSILEKEAEGVTWE 256
>gi|156542709|ref|XP_001603515.1| PREDICTED: ribonuclease H2 subunit A-like [Nasonia vitripennis]
Length = 350
Score = 229 bits (583), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 130/284 (45%), Positives = 167/284 (58%), Gaps = 24/284 (8%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVN- 72
PC +G+DEAGRGPVLGPMVYG Y P S ++ L + ADSK+L EEKR+ +F+ + N
Sbjct: 78 PCQLGVDEAGRGPVLGPMVYGIAYAPLSQKKLLVDMGCADSKSLTEEKRDTIFDKICDNG 137
Query: 73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
D +G+AVD I P ++ M + K +LNE+S +SAI LI + ++ G+ + E+Y+DTVG
Sbjct: 138 DKMGYAVDAISPNYIANCMYRRTKTSLNEVSMNSAISLIKQAIDSGVFVAEIYVDTVGKP 197
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF 192
EKYQAKL FP IK VV+KKADS YP+VS ASI AKV+RD LR W F ET EN +
Sbjct: 198 EKYQAKLEGIFPGIKIVVAKKADSTYPIVSAASICAKVSRDHALRAWQFRET-EN-ESEY 255
Query: 193 GSGYPGD---------HKHIIFGFPSLVRFSWGTCTSHFKD-IVEVLWESDEMDEDVSSR 242
GSGYP D + IFGFP LVRFSW T + V V WE E D
Sbjct: 256 GSGYPNDPVTKSWLSSNVDPIFGFPQLVRFSWSTAEKILESKAVAVEWEDPEEDSSAPES 315
Query: 243 RSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLT 286
+ K F+ S +++E S + R F R L T
Sbjct: 316 KISKY--------FAPSPAKTKE---SARKRHNFFTNRCLTNAT 348
>gi|325974872|gb|ADZ47886.1| ribonuclease H2 subunit A [Capra hircus]
Length = 286
Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 115/243 (47%), Positives = 152/243 (62%), Gaps = 11/243 (4%)
Query: 3 SEAALPKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKR 62
S P PC++G+DEAGRGPVLGPMVY YCP S + L L ADSKTL E +R
Sbjct: 17 SSPVPPVCLKEPCVLGVDEAGRGPVLGPMVYAICYCPLSRLEDLEALKVADSKTLSESER 76
Query: 63 EELFEDLKVN-DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILL 121
+ LF ++ + D VGWA+D++ P +S ML + K NLN +SHD+A GL+ L+ G+ +
Sbjct: 77 DRLFAKMEEDGDFVGWALDVLSPNLISTSMLGRVKYNLNALSHDTATGLVQFALDQGVNV 136
Query: 122 TEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIF 181
+V++DT G E YQ +L QRFP I+ V KAD+LYPVVS ASI AKV RD+ ++ W F
Sbjct: 137 AQVFVDTGGLPETYQERLQQRFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKNWKF 196
Query: 182 EETAENMHRNFGSGYPGD-------HKHI--IFGFPSLVRFSWGTCTSHFKDIVE-VLWE 231
E +++ ++GSGYP D KH+ +FGFP VRFSW T S + E V WE
Sbjct: 197 VEKLQDLDTDYGSGYPNDPKTKAWLRKHVDPVFGFPQFVRFSWRTAQSILETEAEDVKWE 256
Query: 232 SDE 234
E
Sbjct: 257 DSE 259
>gi|328774049|gb|EGF84086.1| hypothetical protein BATDEDRAFT_8789 [Batrachochytrium
dendrobatidis JAM81]
Length = 290
Score = 228 bits (580), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 121/238 (50%), Positives = 157/238 (65%), Gaps = 15/238 (6%)
Query: 7 LPKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELF 66
LP PCI+G+DEAGRGPVLGPMVY Y S+Q L + FADSK L E +R++LF
Sbjct: 54 LPISDRPPCILGVDEAGRGPVLGPMVYAVCYTLISHQDKLKDIGFADSKVLNETQRDKLF 113
Query: 67 EDL-KVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVY 125
+ K ++ +GWA + P+++S ML + K NLN ++HD+ I LI VL+ G+ + EVY
Sbjct: 114 ATIEKQSEWIGWAATVCSPQDISESMLRRAKYNLNALAHDTTINLIQSVLDQGVNIQEVY 173
Query: 126 LDTVGDAEKYQAKLSQRFPSI-KFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEET 184
+DTVG E YQAKL++RFP I K VVSKKADSL+P+VS ASI AKVTRD L W F E
Sbjct: 174 VDTVGSPESYQAKLAKRFPKIGKIVVSKKADSLFPIVSAASICAKVTRDAILCNWEFVEP 233
Query: 185 A-ENMHRNFGSGYPGDHKHI---------IFGFPSLVRFSWGTCTSHFKDI--VEVLW 230
++ R FGSGYP D K + +FGFP +VRFSW T T+ ++ V+VLW
Sbjct: 234 GIDSTQRAFGSGYPADPKTVAWLKKHLDPVFGFPRIVRFSWST-TAKLLEMQGVDVLW 290
>gi|440800045|gb|ELR21088.1| ribonuclease HII, putative [Acanthamoeba castellanii str. Neff]
Length = 292
Score = 228 bits (580), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 117/233 (50%), Positives = 149/233 (63%), Gaps = 12/233 (5%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLN-FADSKTLKEEKREELFEDLKVNDSV 75
+GIDEAGRGPVLGPMVY C YCP S ++ + T + F DSK L E +RE +FE + V
Sbjct: 14 LGIDEAGRGPVLGPMVYACAYCPLSEKENIRTRDGFQDSKQLSEHQRESMFERIVGAPDV 73
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
G+ I+ +LS KML +K NLN+ISHD+A LI R L G+ L EVY+DTVGD +Y
Sbjct: 74 GFEACILSAEDLSNKMLRASKYNLNQISHDTAAELIARALTKGVPLKEVYVDTVGDPGRY 133
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 195
Q LS++FP + VSKKADSL+P+VS ASIVAKV RD+ LR W F+E R FGSG
Sbjct: 134 QENLSRKFPRLAITVSKKADSLFPIVSAASIVAKVIRDQCLRTWKFKEKGVEFSREFGSG 193
Query: 196 YPGD---------HKHIIFGFPSLVRFSWGTCTSHFK--DIVEVLWESDEMDE 237
YP D +FG+P+L+RFSW T + + D V WE+D D+
Sbjct: 194 YPADPFTKQWLEGSLDKLFGYPTLIRFSWATTDNMLEDHDAHAVAWEADVNDD 246
>gi|328783769|ref|XP_396289.3| PREDICTED: ribonuclease H2 subunit A-like isoform 1 [Apis
mellifera]
Length = 350
Score = 227 bits (578), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 128/267 (47%), Positives = 167/267 (62%), Gaps = 23/267 (8%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL-KVN 72
PC +GIDEAGRGPVLGPMVYG Y P S +Q L L ADSK+L EEKR+ +F+ + +
Sbjct: 78 PCQLGIDEAGRGPVLGPMVYGISYAPLSEKQLLVDLGCADSKSLTEEKRDTIFDKICEQY 137
Query: 73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
++GWAVD+I P +S M + K +LNE+S +SAI L V+ G +TE+Y+DT+G
Sbjct: 138 KTIGWAVDVISPNVISNSMYRRVKTSLNEVSMNSAIELAKLVIEAGARITEIYVDTIGKP 197
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF 192
EKYQAKL Q FP IK V+KKADS YP+VS ASI AKV+RD +R W F E + + +
Sbjct: 198 EKYQAKLEQIFPDIKITVAKKADSTYPIVSAASICAKVSRDHAIRAWQFLEGS--ITTEY 255
Query: 193 GSGYPGDHK---------HIIFGFPSLVRFSWGTCTSHFK-DIVEVLWESDEMDEDVSSR 242
GSGYP D + +FGFP +VRFSW T + D + V WE EM EDV R
Sbjct: 256 GSGYPNDPETKKWLSENVDPVFGFPHIVRFSWSTAEKILESDALSVEWE--EM-EDV--R 310
Query: 243 RSGKRQL-----KLSDIGFSSSKRRSE 264
G++++ K D F S K+R +
Sbjct: 311 NPGEQKISSFFAKSPDKSFKSQKKRHQ 337
>gi|86171485|ref|XP_966221.1| ribonuclease HII, putative [Plasmodium falciparum 3D7]
gi|46361187|emb|CAG25051.1| ribonuclease HII, putative [Plasmodium falciparum 3D7]
Length = 288
Score = 227 bits (578), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 129/266 (48%), Positives = 168/266 (63%), Gaps = 23/266 (8%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS-- 74
+GIDEAGRGPVLGPMVY YC +++ L + DSK + E RE++F +K+N+S
Sbjct: 19 LGIDEAGRGPVLGPMVYSGFYCNKEHEKLLKEMKIDDSKKITEADREKMF--VKLNNSKL 76
Query: 75 -VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAE 133
GW V I+ P+++SAKML K K NLNEISHD+AI +I V+N G LTEV++DTVG A
Sbjct: 77 PFGWRVHILLPQDISAKMLKKQKYNLNEISHDTAISIIEHVINRGCNLTEVFVDTVGKAS 136
Query: 134 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG 193
Y+ KL + FP IK V +KADSLYPVVS ASI AKVTRD L+ W +EE N+ FG
Sbjct: 137 VYEEKLQKMFPHIKCTVKEKADSLYPVVSAASICAKVTRDFLLKKWKYEEPIINIDNGFG 196
Query: 194 SGYPGD---------HKHIIFGFPSLVRFSWGTCTSHFKDIVE-VLWESDEMDEDVSSRR 243
SGYPGD + +FGFPS+VRFSW T + +++ E + W DE D +
Sbjct: 197 SGYPGDPVTKNFLKNNFDSVFGFPSIVRFSWSTADTMLENLGEKIEWYDDEEGND---SK 253
Query: 244 SGKRQLKLSDIGFSSSKRRSEEIESS 269
+ KR+ I F SK +S I+ S
Sbjct: 254 ALKRK-----IPFDYSKFKSPYIKRS 274
>gi|312379086|gb|EFR25480.1| hypothetical protein AND_09149 [Anopheles darlingi]
Length = 346
Score = 227 bits (578), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 115/238 (48%), Positives = 145/238 (60%), Gaps = 33/238 (13%)
Query: 14 PCIMGIDEAGRGPVLG---------------------PMVYGCLYCPCSYQQTLATLNFA 52
PC++G+DEAGRGPVLG PMVYG +CP S + L +L FA
Sbjct: 47 PCMLGVDEAGRGPVLGKRDPEPYSERKMKLFCNPMLGPMVYGIAFCPLSKKDILKSLGFA 106
Query: 53 DSKTLKEEKREELFEDLKVND----SVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAI 108
DSK L EEKR+++F+++ D ++GWAV+ I P +S ML + K +LNE+S +SAI
Sbjct: 107 DSKQLTEEKRDQIFDEMNQKDYATEALGWAVEAISPNTISMSMLRRTKCSLNEVSMNSAI 166
Query: 109 GLITRVLNIGILLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVA 168
GLI + G+ + EVY+DTVG EKYQAKL FP K V+KKADS YP+VS ASI A
Sbjct: 167 GLIHAAIEAGVNIAEVYVDTVGPPEKYQAKLKDIFPKFKITVAKKADSTYPIVSAASIAA 226
Query: 169 KVTRDRTLRGWIFEETAENMHRNFGSGYPGDHK--------HIIFGFPSLVRFSWGTC 218
KVTRD L+ W F E +FGSGYPGD ++FGFP LVRFSW T
Sbjct: 227 KVTRDHALKVWQFRERPNEEENSFGSGYPGDPTTKKFLGEVDLVFGFPRLVRFSWSTA 284
>gi|380020624|ref|XP_003694182.1| PREDICTED: ribonuclease H2 subunit A-like [Apis florea]
Length = 350
Score = 225 bits (574), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 125/267 (46%), Positives = 167/267 (62%), Gaps = 23/267 (8%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL-KVN 72
PC +GIDEAGRGPVLGPMVYG Y P S +Q L L ADSK+L EEKR+ +F+ + +
Sbjct: 78 PCQLGIDEAGRGPVLGPMVYGISYAPLSEKQLLVDLGCADSKSLTEEKRDTIFDKICEQY 137
Query: 73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
++GWAVD+I P +S M + K +LNE+S +SAI L V+ G +TE+Y+DTVG
Sbjct: 138 KTIGWAVDVISPNVISNSMYRRVKTSLNEVSMNSAIELAKLVIEAGARITEIYVDTVGKP 197
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF 192
EKYQAKL Q FP IK V+KKADS YP+VS ASI AKV+RD +R W F E + + +
Sbjct: 198 EKYQAKLEQIFPDIKITVAKKADSTYPIVSAASICAKVSRDHAIRAWQFLEGS--ITTEY 255
Query: 193 GSGYPGDHK---------HIIFGFPSLVRFSWGTCTSHFK-DIVEVLWESDEMDEDVSSR 242
GSGYP D + +FGFP +VRFSW T + D + V WE EM++ +R
Sbjct: 256 GSGYPNDPETKKWLSENVDPVFGFPHIVRFSWSTAEKILESDALSVEWE--EMED---AR 310
Query: 243 RSGKRQL-----KLSDIGFSSSKRRSE 264
G++++ + D F S K+R +
Sbjct: 311 IPGEQKISSFFARSPDKSFKSQKKRHQ 337
>gi|431898011|gb|ELK06718.1| Microtubule-associated serine/threonine-protein kinase 1 [Pteropus
alecto]
Length = 1773
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 110/226 (48%), Positives = 147/226 (65%), Gaps = 10/226 (4%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVND 73
PC++G+DEAGRGPVLGPMVY YCP S L L ADSKTL E +R+ LF ++ +
Sbjct: 28 PCVLGVDEAGRGPVLGPMVYAICYCPLSRLADLKALKVADSKTLSESERDRLFAKMEEDR 87
Query: 74 S-VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
+ VGWA+D++ P +S ML + K NLN +SHD+A GL+ L+ G+ + +V++DTVG
Sbjct: 88 NFVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTAAGLVQYALDQGVNVAQVFVDTVGLP 147
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF 192
E YQ +L Q FP I+ V KAD+LYPVVS ASI AKV RD+ ++ W F E +++ ++
Sbjct: 148 ETYQERLQQCFPDIEVTVKAKADALYPVVSAASICAKVARDQAVKNWQFVEKLQDLDIDY 207
Query: 193 GSGYPGD-------HKHI--IFGFPSLVRFSWGTCTSHFKDIVEVL 229
GSGYP D KH+ IFGFP VRFSW T S + EV+
Sbjct: 208 GSGYPNDPKTKAWLRKHVEPIFGFPQFVRFSWRTAQSILEKEAEVV 253
>gi|302836379|ref|XP_002949750.1| hypothetical protein VOLCADRAFT_104408 [Volvox carteri f.
nagariensis]
gi|300265109|gb|EFJ49302.1| hypothetical protein VOLCADRAFT_104408 [Volvox carteri f.
nagariensis]
Length = 308
Score = 224 bits (571), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 117/288 (40%), Positives = 171/288 (59%), Gaps = 22/288 (7%)
Query: 10 WASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL 69
W +PCI+G+DEAGRGPVLGPMVY +CP S ++ +ADSKTL E RE+LF +
Sbjct: 29 WIRSPCILGVDEAGRGPVLGPMVYASAFCPLS--SDISGRGYADSKTLTHEAREKLFRAI 86
Query: 70 KVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 129
N SVGW I+ + +S ML ++K++LN ++ D+ +I L G + +VY+DTV
Sbjct: 87 DANTSVGWVAHIMSAQHISHNMLGRDKVSLNSLAFDATCHVIRTALESGASVKQVYVDTV 146
Query: 130 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH 189
GDA+++ +LS+ FP I F V KADSLYP+VS ASI+AKV RD++L I A +
Sbjct: 147 GDADRHSERLSRAFPGISFTVCPKADSLYPIVSAASIIAKVIRDKSL---IDCRQALGLQ 203
Query: 190 RNFGSGYPGD---------HKHIIFGFPSLVRFSWGTCTSHFK--DIVEVLWESDEMDED 238
G+GYPGD H H + GFP LVR SW TC + + + V +E+D+ +
Sbjct: 204 GEVGTGYPGDATTVAWLKEHIHPVLGFPPLVRHSWETCARMLEPPEAISVNFEADDAADG 263
Query: 239 VSSRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLT 286
+ + S +++L G + +E+SG GR F +RKL+++
Sbjct: 264 LGTSGSSQQRLNFVRPGGAGV------VETSGLGRHTFFRSRKLQRVA 305
>gi|68067767|ref|XP_675818.1| ribonuclease H1 large subunit [Plasmodium berghei strain ANKA]
gi|56495218|emb|CAH97375.1| ribonuclease H1 large subunit, putative [Plasmodium berghei]
Length = 288
Score = 224 bits (571), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 121/245 (49%), Positives = 162/245 (66%), Gaps = 16/245 (6%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS-- 74
+GIDEAGRGPVLGPMVY YC ++ L + DSK + E RE++F K+N+S
Sbjct: 19 LGIDEAGRGPVLGPMVYSGFYCKKEDEKLLKEMKIDDSKKITEHDREKMF--YKLNNSKL 76
Query: 75 -VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAE 133
W V I+ P+++SAKML + K NLNEISHD+AI +I VLN G LTEV++DTVG A
Sbjct: 77 PFAWRVHILMPQDISAKMLKRQKYNLNEISHDTAISIIQHVLNRGCNLTEVFVDTVGKAS 136
Query: 134 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG 193
Y+ KL + FP+IK VV +KADSLYPVVS ASI AKVTRD ++ W +EE N+ + FG
Sbjct: 137 VYEEKLQKLFPNIKCVVKEKADSLYPVVSAASICAKVTRDFLIKKWKYEEHIINIDKGFG 196
Query: 194 SGYPGD---------HKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWESDEMDEDVSSRRS 244
SGYPGD + IFGFPS+VRFSW T + +++ E + DE E+ ++ ++
Sbjct: 197 SGYPGDPVTKNFLKNNFDPIFGFPSIVRFSWSTADTMLENLGEKIEWYDE--EESNNSKA 254
Query: 245 GKRQL 249
KR++
Sbjct: 255 MKRKI 259
>gi|322799751|gb|EFZ20956.1| hypothetical protein SINV_11176 [Solenopsis invicta]
Length = 353
Score = 224 bits (570), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 112/224 (50%), Positives = 149/224 (66%), Gaps = 12/224 (5%)
Query: 5 AALPKWASN-PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKRE 63
+A+PK + PC +G+DEAGRGPVLGPMVYG Y P S +Q L L ADSK+L E+KR+
Sbjct: 70 SAVPKICKDEPCQLGVDEAGRGPVLGPMVYGISYAPLSQKQLLVDLGCADSKSLTEKKRD 129
Query: 64 ELFEDL-KVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLT 122
E+F+D+ + +++GWA++ I P +S M + K++LNE+S SA LI + G+ +
Sbjct: 130 EIFDDICERKENIGWAIEAISPNIISNSMYRRTKVSLNEVSMISATNLIQGAIEAGVNVA 189
Query: 123 EVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFE 182
E+Y+DTVG E YQA+L FP IK VV+KKAD+ YP+VS ASI AKVTRD +R W F
Sbjct: 190 EIYVDTVGKPESYQARLKGVFPGIKIVVAKKADATYPIVSAASICAKVTRDHAIRAWRFR 249
Query: 183 ETAENMHRNFGSGYPGD---------HKHIIFGFPSLVRFSWGT 217
E EN+ +GSGYP D + +FGFP LVRFSW T
Sbjct: 250 E-GENIETQYGSGYPTDPVTKKWLSTNVDRVFGFPQLVRFSWST 292
>gi|395850804|ref|XP_003797965.1| PREDICTED: ribonuclease H2 subunit A [Otolemur garnettii]
Length = 300
Score = 224 bits (570), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 114/240 (47%), Positives = 152/240 (63%), Gaps = 11/240 (4%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVN-D 73
C++G+DEAGRGPVLGPMVY YCP S+ L L ADSKTL E +R LF ++ + D
Sbjct: 29 CVLGVDEAGRGPVLGPMVYAICYCPLSHLADLEALKVADSKTLSESERNRLFAKMEEDRD 88
Query: 74 SVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAE 133
VGWA+D++ P +S ML + K NLN +SHD+A LI L+ G+ +++V++DTVG E
Sbjct: 89 FVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTATALIQYALDQGVKVSQVFVDTVGMPE 148
Query: 134 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG 193
YQ +L Q FP IK V KADSLY VVS ASI AKV RD+ +R W F E ++ ++G
Sbjct: 149 TYQKRLQQCFPGIKVTVKAKADSLYSVVSAASICAKVARDQAVRNWRFVERLQDFDADYG 208
Query: 194 SGYPGD-------HKHI--IFGFPSLVRFSWGTCTSHF-KDIVEVLWESDEMDEDVSSRR 243
SGYP D KH+ +FGFP VRFSW T + K+ +V+WE + + S+ R
Sbjct: 209 SGYPNDPKTKAWLKKHVEPVFGFPQFVRFSWRTAMAILEKEAEDVVWEDLTVGDQESAGR 268
>gi|332030069|gb|EGI69894.1| Ribonuclease H2 subunit A [Acromyrmex echinatior]
Length = 332
Score = 224 bits (570), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 113/232 (48%), Positives = 148/232 (63%), Gaps = 12/232 (5%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL-KVN 72
PC +G+DEAGRGPVLGPMVYG Y P S Q L L ADSK+L E+KR+E+F+D+ K
Sbjct: 61 PCQLGVDEAGRGPVLGPMVYGISYAPLSQNQLLVDLGCADSKSLTEKKRDEIFDDICKHK 120
Query: 73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
DS+GWA+++I P ++ M + KI+LNEIS SA LI + G+ + E+Y+DTVG
Sbjct: 121 DSIGWAIEVISPNVIANNMYRRTKISLNEISMISATNLIREAIEAGVNVAEIYVDTVGKP 180
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF 192
E YQ +L FPSIK +V+KKAD+ YP+VS ASI AKV+RD +R W F E + + +
Sbjct: 181 ESYQTRLKSIFPSIKIIVAKKADATYPIVSAASICAKVSRDHAIRAWRFRED-DCIETEY 239
Query: 193 GSGYPGD---------HKHIIFGFPSLVRFSWGTCTSHFKD-IVEVLWESDE 234
GSGYP D + +FGFP LVRFSW T + + V WE E
Sbjct: 240 GSGYPNDPVTKNWLSMNVDQVFGFPQLVRFSWSTAEQILESKALTVEWEETE 291
>gi|149037818|gb|EDL92178.1| ribonuclease H2, large subunit, isoform CRA_b [Rattus norvegicus]
gi|149037821|gb|EDL92181.1| ribonuclease H2, large subunit, isoform CRA_b [Rattus norvegicus]
Length = 282
Score = 223 bits (569), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 107/209 (51%), Positives = 141/209 (67%), Gaps = 10/209 (4%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVN- 72
PC++G+DEAGRGPVLGPMVY YCP S L L ADSKTL E +RE LF ++ +
Sbjct: 28 PCVLGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLTENERERLFAKMEEDG 87
Query: 73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
D VGWA+DI+ P +S ML + K NLN +SHD+A GLI ++ + +T+V++DTVG
Sbjct: 88 DFVGWALDILSPNLISTSMLGRVKYNLNSMSHDTAAGLIQHAMDQNVKVTQVFVDTVGMP 147
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF 192
E YQA+L QRFP I+ V KADSL+PVVS ASI+AKV RD+ ++ W F E+ + + ++
Sbjct: 148 ETYQARLQQRFPGIEVTVKAKADSLFPVVSAASIIAKVARDQAVKNWQFVESLQGLDSDY 207
Query: 193 GSGYPGD-------HKHI--IFGFPSLVR 212
GSGYP D KH+ +FGFP VR
Sbjct: 208 GSGYPNDPKTKAWLRKHVDPVFGFPQFVR 236
>gi|82706071|ref|XP_727229.1| ribonuclease HII [Plasmodium yoelii yoelii 17XNL]
gi|23482972|gb|EAA18794.1| ribonuclease HII, putative [Plasmodium yoelii yoelii]
Length = 307
Score = 223 bits (568), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 121/245 (49%), Positives = 162/245 (66%), Gaps = 16/245 (6%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS-- 74
+GIDEAGRGPVLGPMVY YC ++ L + DSK + E RE++F K+N+S
Sbjct: 19 LGIDEAGRGPVLGPMVYSGFYCKKEDEKLLKEMKIDDSKKITEHDREKMF--YKLNNSKL 76
Query: 75 -VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAE 133
W V I+ P+++SAKML K K NLNEISHD+AI +I VL+ G LTEV++DTVG A
Sbjct: 77 PFAWRVHILMPQDISAKMLKKEKYNLNEISHDTAISIIQHVLSRGCNLTEVFVDTVGKAS 136
Query: 134 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG 193
Y+ KL + FP+IK VV +KADSLYPVVS ASI AKVTRD ++ W +EE N+ + FG
Sbjct: 137 VYEEKLQKLFPNIKCVVKEKADSLYPVVSAASICAKVTRDFLIKKWKYEEQIINIDKGFG 196
Query: 194 SGYPGD---------HKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWESDEMDEDVSSRRS 244
SGYPGD + IFGFPS+VRFSW T + +++ E + DE E+ ++ ++
Sbjct: 197 SGYPGDPVTKNFLKNNFDPIFGFPSIVRFSWSTADTMLENLGEKIEWYDE--EESNNSKA 254
Query: 245 GKRQL 249
KR++
Sbjct: 255 MKRKI 259
>gi|410925260|ref|XP_003976099.1| PREDICTED: ribonuclease H2 subunit A-like [Takifugu rubripes]
Length = 310
Score = 223 bits (568), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 127/285 (44%), Positives = 168/285 (58%), Gaps = 20/285 (7%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL-KVND 73
C +GIDEAGRGPVLGPMVYG +CP S ++ L L ADSKTL E +RE LFE + +
Sbjct: 29 CCLGIDEAGRGPVLGPMVYGICFCPISRKEELKDLKVADSKTLTEAEREALFEKMDEAKS 88
Query: 74 SVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAE 133
VGWA+ ++ P +S ML + K NLN +SHD+AIGL+ L+ G+ L EV++DTVG A+
Sbjct: 89 YVGWALQVLSPNTISNSMLQRTKYNLNALSHDTAIGLVQHALDCGVQLKEVFVDTVGPAD 148
Query: 134 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG 193
KY+ KLS+ FP I V KADSL+P+VS ASI AKV RD ++ W F E + ++G
Sbjct: 149 KYEDKLSKIFPGIAVTVRPKADSLFPIVSAASICAKVARDFAVKHWRFGEDLGEVDADYG 208
Query: 194 SGYPGDHK---------HIIFGFPSLVRFSWGTCTSHFKDI-VEVLWESDEMD---EDVS 240
SGYP D K +FG+P LVRFSW T + V V W+ D+ D E +
Sbjct: 209 SGYPSDPKTKAWLLRYLDPVFGYPQLVRFSWSTAQTLMDSRGVTVHWDDDDDDEDGEKAA 268
Query: 241 SRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQL 285
RR+ + L FS++ + S R F RKL+ L
Sbjct: 269 QRRNNRSMLSY----FSAAAGGGSQSGSDQTHR--FFSDRKLKSL 307
>gi|307188511|gb|EFN73248.1| Ribonuclease H2 subunit A [Camponotus floridanus]
Length = 334
Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 109/214 (50%), Positives = 144/214 (67%), Gaps = 11/214 (5%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL-KVN 72
PC +G+DEAGRGPVLGPMVYG Y P S +Q L L ADSK+L E+KR+E+F+D+ K
Sbjct: 61 PCQLGVDEAGRGPVLGPMVYGISYAPLSRKQLLVDLGCADSKSLTEKKRDEIFDDICKHK 120
Query: 73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
DS+GWA++ I P ++ M + K++LNE+S SAI LI + G+ + E+Y+DTVG
Sbjct: 121 DSIGWAIEAISPNVIANSMYRRTKVSLNEVSMVSAIKLIQGAIEAGVNVAEIYVDTVGKP 180
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF 192
E YQA+L FP +K VV+KKAD+ YP+VS ASI AKV+RD LR W F E +++ +
Sbjct: 181 ESYQARLKGVFPGVKIVVAKKADATYPIVSAASICAKVSRDHALRAWRFRE-GDSIGTEY 239
Query: 193 GSGYPGD---------HKHIIFGFPSLVRFSWGT 217
GSGYP D + +FGFP LVRFSW T
Sbjct: 240 GSGYPTDPVTKNWLSENVDAVFGFPQLVRFSWST 273
>gi|291229986|ref|XP_002734939.1| PREDICTED: RNase H family member (rnh-2)-like [Saccoglossus
kowalevskii]
Length = 303
Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 124/288 (43%), Positives = 166/288 (57%), Gaps = 23/288 (7%)
Query: 12 SNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL-K 70
S PC GIDEAGRGPVLGPMVYG YCP S + LA + FADSKTL EE+REELF + +
Sbjct: 28 SEPCCFGIDEAGRGPVLGPMVYGICYCPISKNEQLAEMGFADSKTLSEEQREELFTKIYE 87
Query: 71 VNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG 130
N +G+ ++++ P +S M + K +LN +S DSAI L+ + G + EVY+DTVG
Sbjct: 88 ANQVLGYKMEVLSPNIISNSMFRRTKCSLNTVSKDSAIKLLRLTIEEGANIKEVYVDTVG 147
Query: 131 DAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHR 190
DA KYQA L + FP ++ V+ KAD+ +P+VS ASI AKV RDR ++ W F E E
Sbjct: 148 DASKYQAYLKELFPDLEITVTPKADAKFPIVSAASICAKVCRDRAVKSWQFPEFDEINET 207
Query: 191 NFGSGYPGDHK---------HIIFGFPSLVRFSWGTCTSHFKD-IVEVLWESDEMDEDVS 240
+GSGYP D +FGFP VRFSW T ++ V V W+ DE D D
Sbjct: 208 PYGSGYPNDPATKQWLSNVMEPVFGFPRFVRFSWSTADKILEEKAVPVYWDDDE-DGDNG 266
Query: 241 SRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 288
++ + S + F SSK ++ + + R L Q+T F
Sbjct: 267 AKGTP------SVMSFFSSKDSDPRLK-----KHHYFNDRHLTQVTDF 303
>gi|297703733|ref|XP_002828781.1| PREDICTED: LOW QUALITY PROTEIN: ribonuclease H2 subunit A [Pongo
abelii]
Length = 313
Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 115/249 (46%), Positives = 152/249 (61%), Gaps = 25/249 (10%)
Query: 14 PCIMGIDEAGRGPVLGP-------------MVYGCLYCPCSYQQTLATLNFADSKTLKEE 60
PC++G+DEAGRGP++GP MVY YCP S L L ADSKTL E
Sbjct: 28 PCVLGVDEAGRGPLIGPRLPENXHPSSPGPMVYAICYCPLSRLADLEALKVADSKTLLES 87
Query: 61 KREELFEDLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGIL 120
+RE LF ++ D VGWA+D++ P +S ML + K NLN +SHD+A GLI L+ G+
Sbjct: 88 ERERLFAKMEDRDFVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLIQYALDQGVN 147
Query: 121 LTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 180
+T+V++DTVG E YQA+L Q FP I+ V KAD+LYPVVS ASI AKV RD+ ++ W
Sbjct: 148 VTQVFVDTVGMPETYQARLQQSFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKKWQ 207
Query: 181 F-EETAENMHRNFGSGYPGD---------HKHIIFGFPSLVRFSWGTCTSHF-KDIVEVL 229
F E+ ++ + ++GSGYP D H +FGFP VRFSW T + K +V+
Sbjct: 208 FVEKLQDSXYTDYGSGYPQDPKTKAWLKEHVEPVFGFPQFVRFSWRTAQTILEKGAEDVI 267
Query: 230 WESDEMDED 238
WE D ED
Sbjct: 268 WE-DSAPED 275
>gi|355755510|gb|EHH59257.1| Ribonuclease H2 subunit A [Macaca fascicularis]
Length = 325
Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 119/266 (44%), Positives = 154/266 (57%), Gaps = 37/266 (13%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFA--------------------- 52
PC++G+DEAGRGPVLGPMVY YCP S+ L L A
Sbjct: 28 PCVLGVDEAGRGPVLGPMVYAICYCPLSHLADLEALKVAGEPQVWVWEPEVCVWGRDSRV 87
Query: 53 ----DSKTLKEEKREELFEDLKVN-DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSA 107
DSKTL E +RE LF ++ N D VGWA+D++ P +S ML + K NLN +SHD+A
Sbjct: 88 CAGADSKTLLESERERLFAKMEENRDFVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTA 147
Query: 108 IGLITRVLNIGILLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIV 167
GLI L+ G+ +T+V++DTVG E YQA+L Q FP I+ V KAD+LYPVVS ASI
Sbjct: 148 TGLIQYALDQGVNVTQVFVDTVGMPETYQARLQQSFPGIEVTVKAKADALYPVVSAASIC 207
Query: 168 AKVTRDRTLRGWIFEETAENMHRNFGSGYPGD---------HKHIIFGFPSLVRFSWGTC 218
AKV RD+ ++ W F E ++ ++GSGYP D H +FGFP VRFSW T
Sbjct: 208 AKVARDQAVKKWKFVEKLQDSDTDYGSGYPNDPKTKAWLKEHVEPVFGFPQFVRFSWRTA 267
Query: 219 TSHF-KDIVEVLWESDEMDEDVSSRR 243
+ K+ +V+WE D ED R
Sbjct: 268 QTILEKEAEDVIWE-DSTPEDQEGLR 292
>gi|126322781|ref|XP_001362490.1| PREDICTED: ribonuclease H2 subunit A-like [Monodelphis domestica]
Length = 304
Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 116/246 (47%), Positives = 149/246 (60%), Gaps = 11/246 (4%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL-KVND 73
C +GIDEAGRGPVLGPMVYG +CP S L L ADSKTL E +RE LF L + D
Sbjct: 29 CCLGIDEAGRGPVLGPMVYGICFCPLSRLGDLEALKVADSKTLSEAERERLFGKLDQARD 88
Query: 74 SVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAE 133
VGWA+DI+ P +S M + K NLN +SHD+A+ L+ L+ G+ +T+V++DTVG A+
Sbjct: 89 FVGWALDILSPNLISNSMQRRAKYNLNSLSHDTAMALVQLALDQGVKVTQVFVDTVGPAD 148
Query: 134 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG 193
KYQ KL +RFP ++ V KADSL+PVVS ASI AKV RD+ ++ W F E ++ ++G
Sbjct: 149 KYQQKLQERFPELEVTVRPKADSLFPVVSAASICAKVARDQVVKRWKFLEDLGDLKMDYG 208
Query: 194 SGYPGDHK---------HIIFGFPSLVRFSWGTCTSHFKD-IVEVLWESDEMDEDVSSRR 243
SGYP D K +FGFP VRFSW T V V W + D + R
Sbjct: 209 SGYPNDPKTKEWLSQCLDPVFGFPQFVRFSWSTAQLILDGRAVPVRWWEEAGDPPAAGRG 268
Query: 244 SGKRQL 249
S L
Sbjct: 269 SSTPSL 274
>gi|221057860|ref|XP_002261438.1| ribonuclease H1 large subunit [Plasmodium knowlesi strain H]
gi|194247443|emb|CAQ40843.1| ribonuclease H1 large subunit, putative [Plasmodium knowlesi strain
H]
Length = 288
Score = 219 bits (558), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 119/257 (46%), Positives = 164/257 (63%), Gaps = 20/257 (7%)
Query: 7 LPKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELF 66
L K+ +GIDEAGRGPVLGPMVY YC +++ L + DSK + E RE +F
Sbjct: 9 LYKFGDEEVRLGIDEAGRGPVLGPMVYAGFYCNKEHEKLLKEMKIDDSKKISEADREMMF 68
Query: 67 EDLKVNDS---VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTE 123
K+N+S GW + ++ P+++SAKML K K NLNEISHD+AI +I V++ G LTE
Sbjct: 69 H--KLNNSKLPFGWRIHVLMPQDISAKMLKKQKYNLNEISHDTAISIINHVISRGCNLTE 126
Query: 124 VYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEE 183
V++DTVG A Y+ KL++ FP IK V +KADSLYPVVS ASI AKVTRD ++ W +EE
Sbjct: 127 VFVDTVGKANVYEEKLTKLFPHIKCTVREKADSLYPVVSAASICAKVTRDFLIKKWKYEE 186
Query: 184 TAENMHRNFGSGYPGD---------HKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWESDE 234
N+ + FGSGYPGD + +FGFPS+VRFSW T +++E + + E
Sbjct: 187 PLVNIDKGFGSGYPGDPITKNFLKNNFDSVFGFPSIVRFSWSTAD----NMLETMGDQIE 242
Query: 235 MDEDVSSR--RSGKRQL 249
+D+ + R+ KR++
Sbjct: 243 WYDDIENNDSRAIKRKM 259
>gi|350411556|ref|XP_003489389.1| PREDICTED: ribonuclease H2 subunit A-like [Bombus impatiens]
Length = 334
Score = 219 bits (558), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 110/214 (51%), Positives = 143/214 (66%), Gaps = 12/214 (5%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL-KVN 72
PC +GIDEAGRGPVLGPMVYG Y P S +Q L L ADSK+L EE+R+ +F+++ K +
Sbjct: 62 PCQLGIDEAGRGPVLGPMVYGIAYAPLSEKQLLVDLGCADSKSLTEEQRDAIFDNICKQH 121
Query: 73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
++GWAVD+I P ++ M + K +LNE+S +SAI L V+ G +TE+Y+DTVG
Sbjct: 122 KTIGWAVDVISPNIIANNMYRRVKTSLNEVSMNSAIELAKLVIEAGANITEIYVDTVGVP 181
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF 192
+KYQA+L Q FP IK V+KKADS YP+VS ASI AKV RD L+ W F E E + +
Sbjct: 182 QKYQARLEQIFPDIKITVAKKADSTYPIVSAASICAKVLRDHALKAWQFRE--ELITTEY 239
Query: 193 GSGYPGD---------HKHIIFGFPSLVRFSWGT 217
GSGYP D + +FGFP +VRFSW T
Sbjct: 240 GSGYPNDPDTKKWLSENVDPVFGFPHIVRFSWST 273
>gi|115896475|ref|XP_001199108.1| PREDICTED: ribonuclease H2 subunit A-like [Strongylocentrotus
purpuratus]
Length = 324
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 110/216 (50%), Positives = 139/216 (64%), Gaps = 10/216 (4%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLK-VN 72
PC GIDEAGRGPVLGPMVYG +CP S+ L L FADSKTL E +RE L + ++ +
Sbjct: 51 PCCFGIDEAGRGPVLGPMVYGTSFCPISWNTQLGELGFADSKTLNEGQREALMKSIQDAS 110
Query: 73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
D +G+ V+I+ P ++ ML +NK +LN +S DSAIGL+ L G+ + EVY+DTVGDA
Sbjct: 111 DYMGYKVEILSPNYIANSMLRRNKHSLNAVSMDSAIGLLRLALADGVQVKEVYVDTVGDA 170
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF 192
+KYQ KL FP + V KADS +P+VS ASI AKVTRDR GW F ET + N+
Sbjct: 171 KKYQDKLKGLFPDLDITVCPKADSKFPIVSAASICAKVTRDRATTGWKFVETNDFDKENY 230
Query: 193 GSGYPGD---------HKHIIFGFPSLVRFSWGTCT 219
GSGYP D + +FGF VRFSW T +
Sbjct: 231 GSGYPSDPATKKWLAGNVDPVFGFSQFVRFSWSTSS 266
>gi|307198751|gb|EFN79554.1| Ribonuclease H2 subunit A [Harpegnathos saltator]
Length = 337
Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 112/234 (47%), Positives = 145/234 (61%), Gaps = 11/234 (4%)
Query: 12 SNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL-K 70
S PC +G+DEAGRGPVLGPMVYG Y P S +Q L L ADSK+L E+KR+E+F+ + +
Sbjct: 60 SEPCQLGVDEAGRGPVLGPMVYGISYAPLSRKQLLVELGCADSKSLTEKKRDEIFDGICE 119
Query: 71 VNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG 130
D +GWAV+ I P ++ M + K++LNE S SA LI + G+ + EVY+DTVG
Sbjct: 120 HKDCIGWAVEAISPNVIANSMYRRTKVSLNETSMVSATELIKAAIEAGVNVAEVYVDTVG 179
Query: 131 DAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHR 190
E YQA+L FP +K VV+KKADS YP+VS ASI AKV+RD +R W F E
Sbjct: 180 KPETYQARLKAVFPGVKVVVAKKADSTYPIVSAASICAKVSRDHAIRAWRFREVDVAFPS 239
Query: 191 NFGSGYPGD---------HKHIIFGFPSLVRFSWGTCTSHFK-DIVEVLWESDE 234
+GSGYP D + +FGFP LVRFSW T + + + V WE E
Sbjct: 240 EYGSGYPTDPVTKKWLSANVDGVFGFPQLVRFSWSTAEQILQSNALAVEWEESE 293
>gi|340729627|ref|XP_003403099.1| PREDICTED: ribonuclease H2 subunit A-like [Bombus terrestris]
Length = 334
Score = 218 bits (554), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 110/214 (51%), Positives = 141/214 (65%), Gaps = 12/214 (5%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL-KVN 72
PC +GIDEAGRGPVLGPMVYG Y P S +Q L L ADSK+L EE+R+ +F + K +
Sbjct: 62 PCQLGIDEAGRGPVLGPMVYGIAYAPLSEKQLLVDLGCADSKSLTEEQRDAIFNKICKQH 121
Query: 73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
++GWAVD+I P ++ M + K +LNE+S +SAI L V+ G +TE+Y+DTVG
Sbjct: 122 KTIGWAVDVISPNIIANNMYRRVKTSLNEVSMNSAIELAKLVIEAGANITEIYVDTVGVP 181
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF 192
+KYQA+L Q FP IK V+KKADS YP+VS ASI AKV RD L+ W F E E + +
Sbjct: 182 QKYQARLEQIFPDIKITVAKKADSTYPIVSAASICAKVLRDHALKAWQFRE--ELITTEY 239
Query: 193 GSGYPGD---------HKHIIFGFPSLVRFSWGT 217
GSGYP D + +FGFP +VRFSW T
Sbjct: 240 GSGYPNDPDTKKWLSENVDPVFGFPHIVRFSWST 273
>gi|156101113|ref|XP_001616250.1| ribonuclease H1 large subunit [Plasmodium vivax Sal-1]
gi|148805124|gb|EDL46523.1| ribonuclease H1 large subunit , putative [Plasmodium vivax]
Length = 288
Score = 217 bits (553), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 117/250 (46%), Positives = 157/250 (62%), Gaps = 18/250 (7%)
Query: 7 LPKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELF 66
L K+ +GIDEAGRGPVLGPMVY YC +++ L + DSK + E RE +F
Sbjct: 9 LYKFGDEEVRLGIDEAGRGPVLGPMVYAGFYCNKEHEKLLKEMKIDDSKKISEADREMMF 68
Query: 67 EDLKVNDS---VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTE 123
K+N+S GW + ++ P+++SAKML K K NLNEISHD+AI +I V++ G LTE
Sbjct: 69 H--KLNNSSLPFGWRIHVLMPQDISAKMLKKQKYNLNEISHDTAISIIDHVISRGCNLTE 126
Query: 124 VYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEE 183
V++DTVG Y+ KL + FP IK V +KADSLYPVVS ASI AKVTRD ++ W +EE
Sbjct: 127 VFVDTVGKPSVYEEKLKRLFPHIKCTVKEKADSLYPVVSAASICAKVTRDFLIKKWKYEE 186
Query: 184 TAENMHRNFGSGYPGD---------HKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWESDE 234
N+ + FGSGYPGD + +FGFPS+VRFSW T +++E + E E
Sbjct: 187 PLVNIDKGFGSGYPGDPITKNFLKNNFDTVFGFPSIVRFSWSTAD----NMLETMGEQIE 242
Query: 235 MDEDVSSRRS 244
+D+ + S
Sbjct: 243 WYDDIENNDS 252
>gi|383859304|ref|XP_003705135.1| PREDICTED: ribonuclease H2 subunit A-like [Megachile rotundata]
Length = 334
Score = 217 bits (552), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 111/232 (47%), Positives = 148/232 (63%), Gaps = 13/232 (5%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL-KVN 72
PC +GIDEAGRGPVLGPMVYG Y P S ++ L L ADSK+L EEKR+ +F+ + K
Sbjct: 62 PCQLGIDEAGRGPVLGPMVYGISYAPLSSKELLVELGCADSKSLTEEKRDTIFDKICKEQ 121
Query: 73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
D +GW +D I P +S M ++K +LNE+S SAI L + G+ ++E+Y+DTVG
Sbjct: 122 DKMGWCIDAISPNIISNSMYRRSKTSLNEVSMLSAIELTKMAIEAGVWVSEIYVDTVGKP 181
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF 192
EKYQA+L + FP IK V+KKADS YP+VS ASI AKV+RD +R W F E + + + +
Sbjct: 182 EKYQARLEEIFPGIKITVAKKADSTYPIVSAASICAKVSRDHAIRAWQFREGS--VGKAY 239
Query: 193 GSGYPGDHK---------HIIFGFPSLVRFSWGTCTSHFKD-IVEVLWESDE 234
GSGYP D + +FGFP +VRFSW T ++ + V WE E
Sbjct: 240 GSGYPNDPETKNWLIENVDPVFGFPRIVRFSWSTAEKILEEKALSVEWEDTE 291
>gi|358053836|dbj|GAA99968.1| hypothetical protein E5Q_06671 [Mixia osmundae IAM 14324]
Length = 367
Score = 216 bits (551), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 116/254 (45%), Positives = 147/254 (57%), Gaps = 33/254 (12%)
Query: 13 NPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL--- 69
P ++GIDEAGRGPVLGPMVYG YCP +Y+ L L FADSKTL +R EL L
Sbjct: 84 TPYMLGIDEAGRGPVLGPMVYGAAYCPIAYEGQLERLGFADSKTLTAARRSELLRVLCKP 143
Query: 70 -------------KVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLN 116
+D++ WAV ++ P ++S ML K NLN SHD+ I LI V+
Sbjct: 144 ARGAHMSGAALSDPSSDNLEWAVRVMSPFDISRGMLRKTPYNLNAQSHDATIMLIRDVIQ 203
Query: 117 IGILLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTL 176
+G + E Y+DTVG A +YQ LS FP+IKF V+ KADS+YP+V ASI AKVTRD L
Sbjct: 204 MGYNIAEAYIDTVGIASQYQDFLSGVFPTIKFTVTSKADSIYPIVGAASIAAKVTRDSVL 263
Query: 177 RGWIFEET------AENMHRNFGSGYPGDHKHI---------IFGFPSLVRFSWGTCTSH 221
GW + AE+ +FGSGYPGD + + +FGFP++ RFSW T +
Sbjct: 264 EGWTYRNALPAMLVAESDDSDFGSGYPGDPRTVAWLERNMDPVFGFPAVARFSWATVKNM 323
Query: 222 F-KDIVEVLWESDE 234
K V W SDE
Sbjct: 324 LEKKAAHVRW-SDE 336
>gi|72007775|ref|XP_782683.1| PREDICTED: ribonuclease H2 subunit A-like [Strongylocentrotus
purpuratus]
Length = 324
Score = 216 bits (550), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 109/216 (50%), Positives = 138/216 (63%), Gaps = 10/216 (4%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLK-VN 72
PC GIDEAGRGPVLGPMVYG +CP S+ L L FADSKTL E +RE L + ++ +
Sbjct: 51 PCCFGIDEAGRGPVLGPMVYGTSFCPISWNTQLGELGFADSKTLNEGQREALMKSIQDAS 110
Query: 73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
D +G+ V+I+ P ++ ML +NK +LN +S DSAIGL+ L G+ + EVY+DTVGDA
Sbjct: 111 DYMGYKVEILSPNYIANSMLRRNKHSLNAVSMDSAIGLLRLALADGVQVKEVYVDTVGDA 170
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF 192
+KYQ KL FP + V KADS +P+VS ASI AKVTRDR GW F E + N+
Sbjct: 171 KKYQDKLKGLFPDLDITVCPKADSKFPIVSAASICAKVTRDRATTGWKFVEKNDIDKENY 230
Query: 193 GSGYPGD---------HKHIIFGFPSLVRFSWGTCT 219
GSGYP D + +FGF VRFSW T +
Sbjct: 231 GSGYPSDPATKKWLAGNVDPVFGFSQFVRFSWSTSS 266
>gi|209877739|ref|XP_002140311.1| ribonuclease HI large subunit [Cryptosporidium muris RN66]
gi|209555917|gb|EEA05962.1| ribonuclease HI large subunit, putative [Cryptosporidium muris
RN66]
Length = 286
Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 123/266 (46%), Positives = 157/266 (59%), Gaps = 31/266 (11%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVN- 72
P I+GIDEAGRGPVLGPMV+ C Y P ++ L +N DSK L E RE++ +D++ N
Sbjct: 19 PVILGIDEAGRGPVLGPMVFACFYYPTENEKLLKLMNIDDSKKLTENSREKINKDIRNNK 78
Query: 73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
+ GW + I+ P+ LS +ML K K NLNEISH +AI LI VL G+ +T +Y+DTVG
Sbjct: 79 NQFGWGIYILLPQYLSCQMLKKQKYNLNEISHTAAINLIKSVLQHGVNVTHIYIDTVGPP 138
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI-------FEETA 185
E Y+ KL FPSI V+ KADSLYP VSGASI+AKV RD L W ++
Sbjct: 139 ESYKKKLKLLFPSINITVTPKADSLYPCVSGASILAKVERDHFLSNWWSFPGHDRYDHNG 198
Query: 186 ENMH-RNFGSGYPGDHK---------HIIFGFPSLVRFSWGTCTSHF-KDIVEVLWESDE 234
N+ GSGYPGD K H +FGFP++VRFSW T K+ V V W
Sbjct: 199 NNLSIYEQGSGYPGDPKTKQFLKQIFHKVFGFPNIVRFSWSTADQIIEKEGVRVKW---T 255
Query: 235 MDEDVSSRRSGKRQLKLSDIGFSSSK 260
+DED S + S I FS++K
Sbjct: 256 LDEDNSEQ---------SKISFSTNK 272
>gi|392594942|gb|EIW84266.1| ribonuclease HII [Coniophora puteana RWD-64-598 SS2]
Length = 298
Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 111/222 (50%), Positives = 141/222 (63%), Gaps = 15/222 (6%)
Query: 11 ASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLK 70
+S P I+G+DEAGRGPVLGPMVYG +CP +Y++ L + FADSKTL +KREEL L
Sbjct: 26 SSGPYILGVDEAGRGPVLGPMVYGVAFCPKAYEEQLEGMGFADSKTLTPQKREELLRVLN 85
Query: 71 VND-SVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 129
+ ++GWAV ++ P+ +SA ML INLN+ + D+ I LI VL GI L+E+Y+D +
Sbjct: 86 SDPYNLGWAVRVLSPQAISAGMLRNPPINLNKQAQDATILLIQEVLQKGIQLSEIYVDAL 145
Query: 130 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEET----- 184
GD +KY A LS FP I F V KKADSL+ +V AS+ AKVTRD L W++EE+
Sbjct: 146 GDCDKYTALLSSIFPGIAFTVRKKADSLFKIVGAASVGAKVTRDSCLENWVYEESTSQGD 205
Query: 185 AENMHRNFGSGYPGDHK---------HIIFGFPSLVRFSWGT 217
E GSGYP D FGFPSLVRFSW T
Sbjct: 206 GEGWGNTIGSGYPSDPTTQAWLKSSVDPTFGFPSLVRFSWTT 247
>gi|343427877|emb|CBQ71403.1| related to 35 kDa ribonuclease H [Sporisorium reilianum SRZ2]
Length = 464
Score = 214 bits (545), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 113/283 (39%), Positives = 156/283 (55%), Gaps = 57/283 (20%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVND 73
PC++G+DEAGRGPVLGP+VYG YCP SYQ +LA + FADSK L E+R L L ++
Sbjct: 72 PCVLGVDEAGRGPVLGPLVYGIAYCPVSYQDSLAQIGFADSKALTPERRSTLLTALIEDE 131
Query: 74 SVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAE 133
++GWAV ++ P+++SA ML + +NLN S + + LI VL+ G+ +TE+Y+DTVGDA+
Sbjct: 132 TLGWAVRVMAPQDISAGMLRRRPVNLNAQSSSATVSLIQGVLDSGVDVTEIYVDTVGDAK 191
Query: 134 KYQAKLSQRF---PSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEET------ 184
Y L+ F P +K+ V+ KAD++YP+V ASI AKVTRDR + GW + E
Sbjct: 192 SYARLLASHFPRHPHVKWTVTSKADAIYPIVGAASIAAKVTRDRCVEGWRYAEQPVRTEC 251
Query: 185 ----------AENMHRN----------------FGSGYPGDHKHI---------IFGFPS 209
E M R GSGYPGD + +FG+P
Sbjct: 252 VLGDATNVLHGEAMERKRKECDDDVDVWTSMGALGSGYPGDPNTVAYLKRTLDPVFGWPG 311
Query: 210 LVRFSWGTCTSHFKDIVEVLWESDEMDEDVSSRRSGKRQLKLS 252
+VRFSW T + +DE V+ GKR + S
Sbjct: 312 IVRFSWATAKTM-------------LDEKVAPTLGGKRLTRTS 341
>gi|395513066|ref|XP_003760751.1| PREDICTED: ribonuclease H2 subunit A [Sarcophilus harrisii]
Length = 307
Score = 214 bits (544), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 110/231 (47%), Positives = 141/231 (61%), Gaps = 11/231 (4%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL-KVND 73
C +GIDE GR V GPMVYG +CP S L L ADSKTL E +RE LF L + D
Sbjct: 29 CCLGIDEIGRAHVSGPMVYGICFCPLSRLGDLEALKVADSKTLSEAERERLFGKLEQARD 88
Query: 74 SVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAE 133
VGWA+DI+ P +S M + K NLN +SHD+A+ L+ L+ G+ +T+V++DTVG A+
Sbjct: 89 FVGWALDILSPNLISTSMQRRAKYNLNSLSHDTAMALVQLALDQGVRVTQVFVDTVGPAD 148
Query: 134 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG 193
KYQ KL +RFP ++ V KADSL+PVVS ASI AKV RD ++ W F E +++ ++G
Sbjct: 149 KYQQKLKERFPEVEVTVRPKADSLFPVVSAASICAKVARDHAVKRWKFLEDLKDLKMDYG 208
Query: 194 SGYPGDHK---------HIIFGFPSLVRFSWGTCTSHFKD-IVEVLWESDE 234
SGYP D K +FGFP VRFSW T V V WE E
Sbjct: 209 SGYPNDPKTKEWLSQCLDPVFGFPQFVRFSWSTAQLILDGRAVPVRWEDSE 259
>gi|56754417|gb|AAW25396.1| SJCHGC03278 protein [Schistosoma japonicum]
Length = 289
Score = 213 bits (542), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 127/264 (48%), Positives = 155/264 (58%), Gaps = 19/264 (7%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFED-LKVNDS 74
++GIDEAGRGPVLGPMVY C P + L T+ ADSKTL E +RE+L +D L D
Sbjct: 1 MLGIDEAGRGPVLGPMVYACALSPINRLNELTTIGLADSKTLSEIQREKLLQDMLNKCDW 60
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
+ V +I P ++ KML+++K +LN ISHDSAI LI VL+ GI L EVY+DTVG AE
Sbjct: 61 MSAVVHVISPVYITEKMLDRSKTSLNVISHDSAIQLIQTVLDSGINLVEVYVDTVGKAEH 120
Query: 135 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH-RNFG 193
Y+AKL FP +K V KAD YP+VS ASI AKVTRDR L+ W EE G
Sbjct: 121 YEAKLQNLFPQLKIRVESKADDTYPIVSAASIFAKVTRDRILQMWPKEERGNVPDGTGLG 180
Query: 194 SGYPGDHK---------HIIFGFPSLVRFSWGTCTSHFKDI-VEVLWESDEMDEDV---- 239
SGYPGD +FGFPSLVR SW T ++ + V V WE DE E+V
Sbjct: 181 SGYPGDPVTKSYLRACLDPVFGFPSLVRSSWSTASTLLEQHGVSVKWEDDETHEEVVEAK 240
Query: 240 ---SSRRSGKRQLKLSDIGFSSSK 260
R K KLS+ + SK
Sbjct: 241 KLAKKREYSKGTCKLSNFFNAQSK 264
>gi|66801163|ref|XP_629507.1| ribonuclease H2 subunit A [Dictyostelium discoideum AX4]
gi|74896782|sp|Q54D13.1|RNH2A_DICDI RecName: Full=Ribonuclease H2 subunit A; Short=RNase H2 subunit A
gi|60462898|gb|EAL61095.1| ribonuclease H2 subunit A [Dictyostelium discoideum AX4]
Length = 289
Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 114/257 (44%), Positives = 160/257 (62%), Gaps = 19/257 (7%)
Query: 12 SNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL-K 70
S P +MGIDEAGRGPV+GPMVYGC Y P S TL ++ F DSK L E++R++LF+ + +
Sbjct: 18 SEPFVMGIDEAGRGPVMGPMVYGCCYAPISKSTTLKSMKFNDSKKLTEQQRDQLFDKMGE 77
Query: 71 VNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG 130
N + + D+I LS KML K I+LN ISH+SAIGLI VL G+ + E+YLDTVG
Sbjct: 78 SNKILAYETDVITAEILSEKMLYKKPISLNVISHESAIGLIRSVLKKGVNVQELYLDTVG 137
Query: 131 DAEKYQAKLSQRFPSI-KFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFE-----ET 184
+KYQ L + FP I K +VSKKADSLYP+VS ASI AKV RD + F+ +
Sbjct: 138 PPDKYQLMLKKLFPEIGKIIVSKKADSLYPIVSAASIAAKVVRDFEITNKNFDYLNIYDQ 197
Query: 185 AENMHRNFGSGYPGD---------HKHIIFGFPSLVRFSWGTCTSHFKDI---VEVLWES 232
E + +FGSGYP D ++ +FG+P+ +RFSW T + + V+ + E+
Sbjct: 198 DEQLSTDFGSGYPSDPLSKKWLVKNRDKVFGYPNFIRFSWKTTETAMRGACFGVDWVLEN 257
Query: 233 DEMDEDVSSRRSGKRQL 249
D++ + ++ K++
Sbjct: 258 DKLKQHFQENQNDKKRF 274
>gi|169859580|ref|XP_001836428.1| ribonuclease H2 subunit A [Coprinopsis cinerea okayama7#130]
gi|116502486|gb|EAU85381.1| ribonuclease H2 subunit A [Coprinopsis cinerea okayama7#130]
Length = 308
Score = 211 bits (537), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 110/235 (46%), Positives = 143/235 (60%), Gaps = 15/235 (6%)
Query: 11 ASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLK 70
A P I+G+DEAGRGPVLGP+VYG YCP +Y++TL L FADSKTL + R L L
Sbjct: 37 APGPYILGVDEAGRGPVLGPLVYGVAYCPVAYKETLEELGFADSKTLTADTRSSLISTLC 96
Query: 71 VNDS-VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 129
+ S +GW+V +I P+ +S+ ML K NLN+ S D+ IGLI +V++ GI +TEVY+D +
Sbjct: 97 SDPSNLGWSVRVIAPQAISSGMLKKPPTNLNKQSQDATIGLIRQVIDKGINVTEVYVDAL 156
Query: 130 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH 189
G+ Y+A LS FP I F V+ KADS + +V AS+ AKVTRD + W+FEE N
Sbjct: 157 GNTSTYEAYLSSLFPGIDFTVANKADSKFKIVGAASVAAKVTRDVCIEEWVFEEDGGNAK 216
Query: 190 ----RNFGSGYPGDHK---------HIIFGFPSLVRFSWGTCTSHF-KDIVEVLW 230
+ GSGYP D +FGFP +VRFSW T K EV W
Sbjct: 217 SKWSKALGSGYPSDPNTQAWLKNAVDPVFGFPKIVRFSWSTVKVVLDKQAKEVKW 271
>gi|148673841|gb|EDL05788.1| mCG129830, isoform CRA_a [Mus musculus]
Length = 226
Score = 210 bits (535), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 99/189 (52%), Positives = 130/189 (68%), Gaps = 1/189 (0%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVN- 72
PC++G+DEAGRGPVLGPMVY YCP S L L ADSKTL E +RE LF ++ +
Sbjct: 28 PCVLGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLTENERERLFAKMEEDG 87
Query: 73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
D VGWA+D++ P +S ML + K NLN +SHD+A GLI L+ + +T+V++DTVG
Sbjct: 88 DFVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTAAGLIQYALDQNVNVTQVFVDTVGMP 147
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF 192
E YQA+L Q FP I+ V KADSL+PVVS ASI AKV RD+ ++ W F E +++ ++
Sbjct: 148 ETYQARLQQHFPGIEVTVKAKADSLFPVVSAASIFAKVARDKAVKNWQFVENLQDLDSDY 207
Query: 193 GSGYPGDHK 201
GSGYP D K
Sbjct: 208 GSGYPNDPK 216
>gi|336383681|gb|EGO24830.1| hypothetical protein SERLADRAFT_361719 [Serpula lacrymans var.
lacrymans S7.9]
Length = 329
Score = 210 bits (535), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 113/225 (50%), Positives = 136/225 (60%), Gaps = 18/225 (8%)
Query: 11 ASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLK 70
A P I+G+DEAGRGPVLGP+VYG YCP SYQ L L FADSKTL EKR L L
Sbjct: 36 APGPYILGVDEAGRGPVLGPLVYGVAYCPASYQADLEELGFADSKTLTAEKRSLLLSILG 95
Query: 71 VND-SVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 129
+ ++GW+V +I P+ +S+ ML NLN S D+ I LI V+ GI L+EVY+D +
Sbjct: 96 SDPKNLGWSVRVISPQAISSGMLRVPPTNLNRQSQDATILLIREVIQRGIQLSEVYVDAL 155
Query: 130 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH 189
G Y+A LS FP I F V+ KADS + +V AS+ AKVTRD L GWIFEE+ N
Sbjct: 156 GTTTTYEAYLSSVFPGINFTVTTKADSKFKIVGAASVAAKVTRDACLEGWIFEESKGNKV 215
Query: 190 RN--------FGSGYPGDHK---------HIIFGFPSLVRFSWGT 217
N FGSGYP D K FGFPS+VRFSW T
Sbjct: 216 VNSSSTWTTEFGSGYPSDPKTQAWLKNSIDPTFGFPSVVRFSWTT 260
>gi|326431468|gb|EGD77038.1| ribonuclease [Salpingoeca sp. ATCC 50818]
Length = 421
Score = 210 bits (534), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 110/230 (47%), Positives = 139/230 (60%), Gaps = 14/230 (6%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLK--- 70
PCI+G+DEAGRGPV GPMVYG + P ++TL + F DSK +KEE+RE LF ++K
Sbjct: 125 PCILGVDEAGRGPVCGPMVYGVAFAPKPMEKTLKNMGFTDSKVVKEEERERLFTEMKSGS 184
Query: 71 VNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG 130
++ +GW V + P +S ML + K +LNE+SHD+ IGLI R L+ G+ L VY+DTVG
Sbjct: 185 LHGKMGWKVHSLSPNTISTGMLARQKYSLNELSHDTCIGLIRRCLDQGVNLEAVYVDTVG 244
Query: 131 DAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHR 190
YQAKL FP +K VSKKADS Y +VS ASI AKV RD L W E +
Sbjct: 245 PDTVYQAKLQGIFPQLKITVSKKADSKYVIVSAASICAKVVRDHVLSAWRHPERI-GANT 303
Query: 191 NFGSGYPGDHK---------HIIFGFPSLVRFSWGTCTSHF-KDIVEVLW 230
+G GYP D K +FGFPS+VRFSW T + K V W
Sbjct: 304 EYGCGYPSDPKTKAWLRANIDKVFGFPSVVRFSWQTAQTLLDKHAAAVTW 353
>gi|242010277|ref|XP_002425895.1| ribonuclease hi large subunit, putative [Pediculus humanus
corporis]
gi|212509871|gb|EEB13157.1| ribonuclease hi large subunit, putative [Pediculus humanus
corporis]
Length = 271
Score = 210 bits (534), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 106/227 (46%), Positives = 143/227 (62%), Gaps = 11/227 (4%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL-KVN 72
PCI+G+DEAGRGPVLGPMVY +C + L + DSK L E+KRE++F+ + + N
Sbjct: 46 PCILGVDEAGRGPVLGPMVYSVFFCSINDADILKDIGCTDSKVLTEKKREDIFDLINQNN 105
Query: 73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
D +GWAVD++ P +S +ML + K +LNEI+ +S I LI +L I L ++++DT+G A
Sbjct: 106 DKLGWAVDLLSPNLISNRMLQRKKYSLNEIAQNSTIKLIESLLEKNITLKDIFVDTIGPA 165
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF 192
+KYQ KLS+ FP+ K V KAD LYPVV ASI AKV RD ++ W F E + F
Sbjct: 166 DKYQEKLSKLFPNSKVTVKSKADLLYPVVGAASICAKVIRDTAVQQWKFPEKI-TIDAEF 224
Query: 193 GSGYPGD---------HKHIIFGFPSLVRFSWGTCTSHFKDIVEVLW 230
G+GYPGD K +FGFP+LVRFSW T ++ V W
Sbjct: 225 GTGYPGDPKTKKFLLESKDSVFGFPNLVRFSWSTSAKLLEEETLVEW 271
>gi|388580955|gb|EIM21266.1| ribonuclease HII [Wallemia sebi CBS 633.66]
Length = 327
Score = 210 bits (534), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 121/290 (41%), Positives = 157/290 (54%), Gaps = 42/290 (14%)
Query: 12 SNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL-K 70
+N +MG+DEAGRGPVLGP+VYG YC Y+ TL + FADSK L E R+ L + L
Sbjct: 46 NNKVMMGVDEAGRGPVLGPLVYGIAYCNLDYEDTLKDVGFADSKALTAESRQTLLDKLIS 105
Query: 71 VNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG 130
++D + W+V ++ P+++SA ML K NLN SHD+ LI V+ G+ L VY+DTVG
Sbjct: 106 LSDQLAWSVRVMSPQDISAGMLKKVPYNLNAQSHDATFSLINDVIAKGVQLEHVYVDTVG 165
Query: 131 DAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENM-- 188
A+ YQAKL FPSI F V+ KADSL+P+VS ASI AKVTRD + W F E N
Sbjct: 166 PAKSYQAKLEAAFPSIGFTVASKADSLFPIVSAASIAAKVTRDAIIDNWSFLEPISNAIS 225
Query: 189 --------------------HRNFGSGYPGDHKHI---------IFGFPSLVRFSWGTCT 219
GSGYPGD + +FG P L RFSW T
Sbjct: 226 SSKKLKNEDSSVDVSEQQPEKMKLGSGYPGDPNTVAWLKNNLDDVFGLPQLARFSWSTVK 285
Query: 220 SHFK-DIVEVLWESDEMDEDVSSRRSGKRQLKLSDIGFSSSKRRSEEIES 268
+ + + +V W MDED + +S +LSD S K + I S
Sbjct: 286 NLLESNAHQVTW----MDEDENVYKS-----QLSDAPPSLKKLGVQPISS 326
>gi|389749729|gb|EIM90900.1| ribonuclease H2 subunit A [Stereum hirsutum FP-91666 SS1]
Length = 317
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 114/250 (45%), Positives = 146/250 (58%), Gaps = 27/250 (10%)
Query: 11 ASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLK 70
AS P I+G+DEAGRGPVLGP+VYG YCP SYQ+ L L FADSKTL R L + L
Sbjct: 34 ASGPYILGVDEAGRGPVLGPLVYGIAYCPASYQEELEGLGFADSKTLTATTRSALLKSLS 93
Query: 71 VNDS-VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 129
+ S +GW+V ++ P+ +S+ ML + NLN S D+ + LI VL G+ L+EVY+D +
Sbjct: 94 DDPSNLGWSVRVVSPQAISSGMLRRPPTNLNRQSEDATVLLIREVLQRGLELSEVYVDAL 153
Query: 130 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEE------ 183
G + Y+A LS +FP I F V+ KADS + +V AS+ AKVTRD + GWI+EE
Sbjct: 154 GPTKTYEAYLSSQFPGINFTVTAKADSKFKIVGAASVAAKVTRDAWIEGWIYEEDSPSSD 213
Query: 184 -------TAENMHR---NFGSGYPGDHK---------HIIFGFPSLVRFSWGTCTSHF-K 223
T+E R FGSGYP D K FGFPS VRFSW T K
Sbjct: 214 KQYELQSTSEAKRRWASEFGSGYPSDPKTKEWIKLSLDRTFGFPSFVRFSWTTAKVALEK 273
Query: 224 DIVEVLWESD 233
+ +V W D
Sbjct: 274 EAHDVQWIDD 283
>gi|330791509|ref|XP_003283835.1| hypothetical protein DICPUDRAFT_26608 [Dictyostelium purpureum]
gi|325086221|gb|EGC39614.1| hypothetical protein DICPUDRAFT_26608 [Dictyostelium purpureum]
Length = 289
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 114/240 (47%), Positives = 149/240 (62%), Gaps = 17/240 (7%)
Query: 12 SNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL-K 70
+ P IMGIDEAGRGPV+GP+VYGC + P S T++ + F DSK L E++R LF+ +
Sbjct: 14 TKPFIMGIDEAGRGPVMGPLVYGCCFAPISETATISKMKFNDSKKLTEQQRNHLFQKMCD 73
Query: 71 VNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG 130
N +G+ VD+I P LS KML K I+LN ISH+SA+GLI VL+ GI + E+YLDTVG
Sbjct: 74 SNKILGFEVDVISPEILSEKMLLKKPISLNVISHESAMGLIRSVLSKGINVQELYLDTVG 133
Query: 131 DAEKYQAKLSQRFPSI-KFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETA---- 185
YQA L FP I K VVSKKADSLYP+VS ASI AKV RD + F++
Sbjct: 134 TPATYQAMLKNHFPEISKIVVSKKADSLYPIVSAASICAKVIRDHEITSKNFDDLEIQDE 193
Query: 186 -ENMHRNFGSGYPGD---------HKHIIFGFPSLVRFSWGTCTSHFK-DIVEVLWESDE 234
+ + FGSGYP D ++ +FG+PS +RFSW T + + + V W D+
Sbjct: 194 DDQLSTEFGSGYPSDPVTKFWLTKNRDKVFGYPSFIRFSWSTADNAMRGNCFGVEWNLDK 253
>gi|268559996|ref|XP_002637939.1| C. briggsae CBR-RNH-2 protein [Caenorhabditis briggsae]
Length = 297
Score = 207 bits (527), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 113/236 (47%), Positives = 141/236 (59%), Gaps = 15/236 (6%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFE----DL 69
PC++GIDEAGRGPVLGPMVY P L L DSK L E KREE+FE D
Sbjct: 21 PCVLGIDEAGRGPVLGPMVYAAAISPMDQNAELKALGVDDSKALNEAKREEIFEKINNDE 80
Query: 70 KVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 129
++ V +A+ + P +S+ ML ++K +LNE+SHD+AI LI + + E+ +DTV
Sbjct: 81 EIQQIVAYAIRSLSPELISSSMLKRHKYSLNEVSHDAAIALIRDAFACNVNVVEIKVDTV 140
Query: 130 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH 189
G YQAKL + FP I V++KADSL+P+VS ASI AKVTRD LR W F+E +
Sbjct: 141 GPKATYQAKLERLFPGISICVTEKADSLFPIVSAASIAAKVTRDTRLRNWEFKEENIKVP 200
Query: 190 RN-FGSGYPGDHK---------HIIFGFPSLVRFSWGTCTSHF-KDIVEVLWESDE 234
N FGSGYPGD H IFGF SLVR SW T ++ K V WE DE
Sbjct: 201 ENGFGSGYPGDPNTKKFLQLSVHPIFGFCSLVRASWKTASAIVEKRCVPGYWEDDE 256
>gi|336370925|gb|EGN99265.1| hypothetical protein SERLA73DRAFT_160724 [Serpula lacrymans var.
lacrymans S7.3]
Length = 313
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 113/227 (49%), Positives = 136/227 (59%), Gaps = 20/227 (8%)
Query: 11 ASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLK 70
A P I+G+DEAGRGPVLGP+VYG YCP SYQ L L FADSKTL EKR L L
Sbjct: 36 APGPYILGVDEAGRGPVLGPLVYGVAYCPASYQADLEELGFADSKTLTAEKRSLLLSILG 95
Query: 71 VND-SVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTE--VYLD 127
+ ++GW+V +I P+ +S+ ML NLN S D+ I LI V+ GI L+E VY+D
Sbjct: 96 SDPKNLGWSVRVISPQAISSGMLRVPPTNLNRQSQDATILLIREVIQRGIQLSEVGVYVD 155
Query: 128 TVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAEN 187
+G Y+A LS FP I F V+ KADS + +V AS+ AKVTRD L GWIFEE+ N
Sbjct: 156 ALGTTTTYEAYLSSVFPGINFTVTTKADSKFKIVGAASVAAKVTRDACLEGWIFEESKGN 215
Query: 188 MHRN--------FGSGYPGDHK---------HIIFGFPSLVRFSWGT 217
N FGSGYP D K FGFPS+VRFSW T
Sbjct: 216 KVVNSSSTWTTEFGSGYPSDPKTQAWLKNSIDPTFGFPSVVRFSWTT 262
>gi|348677951|gb|EGZ17768.1| hypothetical protein PHYSODRAFT_545238 [Phytophthora sojae]
Length = 809
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 106/229 (46%), Positives = 144/229 (62%), Gaps = 11/229 (4%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
++GIDEAGRGPV+GPMVYG Y P + ++ L F DSK L E R +LFE ++ + +
Sbjct: 1 MLGIDEAGRGPVMGPMVYGAAYWPVADNDAMSALGFDDSKALSAESRAQLFEKMQSTEGL 60
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
GW V +I E+S KM + NLNE+S D+AI LI V G ++ +V++DTVGD Y
Sbjct: 61 GWIVRLISAAEISDKM-QRQTSNLNEMSRDAAIQLINEVQKKGAVVKKVFVDTVGDPRWY 119
Query: 136 QAKLSQRFP-SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGS 194
Q+ L++ F +I+F V KKADSL+ VVS ASI AKVTRDR + W +E A + +FGS
Sbjct: 120 QSFLTKHFNGTIEFRVEKKADSLFKVVSAASIAAKVTRDRVISDWKWESPALDFPTDFGS 179
Query: 195 GYPGD---------HKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWESDE 234
GYP D H +F FP+++RFSWGT F+ V+V W D+
Sbjct: 180 GYPSDPKTKAWLTTHMDQVFVFPNIIRFSWGTVEPFFEKAVKVEWPHDK 228
>gi|324509653|gb|ADY44053.1| Ribonuclease H2 subunit A [Ascaris suum]
Length = 298
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 108/219 (49%), Positives = 137/219 (62%), Gaps = 14/219 (6%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVND 73
PC++GIDEAGRGPVLGPMVY C P + L L DSK L EEKR ++FE++ +
Sbjct: 28 PCVLGIDEAGRGPVLGPMVYACAISPLDAAEQLKELGVDDSKALTEEKRTQIFENMNNEE 87
Query: 74 S----VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 129
+ V +A ++ R +SA+ML + K +LNE+SH SAI LI L GI +TE+Y+DTV
Sbjct: 88 NTTKVVAYAYRVLSARLISAEMLRRCKYSLNELSHTSAINLIKFALENGINVTEIYVDTV 147
Query: 130 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH 189
G YQAKL FP+I V++KADSL+PVV ASI AKVTRD LR W+F E +
Sbjct: 148 GPKSTYQAKLQAHFPNISITVTEKADSLFPVVGAASIAAKVTRDGVLRDWVFVEGDVTVP 207
Query: 190 R-NFGSGYPGDHK---------HIIFGFPSLVRFSWGTC 218
+GSGYPGD +FG+ SLVRFSW T
Sbjct: 208 EGGYGSGYPGDPNTRKFLVTSIDPVFGYSSLVRFSWKTA 246
>gi|299473412|emb|CBN77810.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 320
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 116/243 (47%), Positives = 145/243 (59%), Gaps = 15/243 (6%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I+GIDEAGRGPVLGPM YG Y C+ + ++ F DSK L ++R LF+ + V
Sbjct: 51 ILGIDEAGRGPVLGPMTYGAAYWSCADDKEMSAKGFDDSKALTSDQRTSLFDRIDRTPEV 110
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
GW + +I RELS KM K +LN ISHD+A LI V G+ +T+VY+DTVGD Y
Sbjct: 111 GWVLRLISARELSDKMCRKVPYSLNVISHDAAAELIRAVQARGVKVTQVYVDTVGDPAFY 170
Query: 136 QAKLSQRF-PSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENM--HRNF 192
Q+KL + F IKFVV+KKADSLY S ASIVAKVTRDR + GW + E + R +
Sbjct: 171 QSKLEKEFGKGIKFVVAKKADSLYKTASAASIVAKVTRDRIVEGWQWSEPNLDFSEDRKY 230
Query: 193 GSGYPGDHK---------HIIFGFPSLVRFSWGTCTSHFKDIV--EVLWESDEMDEDVSS 241
GSGYPGD K +FGFP + RFSWGT K V WE +E DE+ +
Sbjct: 231 GSGYPGDEKCKKWLESNVDPVFGFPDICRFSWGTTKEILKGPTRKRVDWE-EEPDEEAAG 289
Query: 242 RRS 244
S
Sbjct: 290 MNS 292
>gi|389584587|dbj|GAB67319.1| ribonuclease H1 large subunit [Plasmodium cynomolgi strain B]
Length = 279
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 108/215 (50%), Positives = 140/215 (65%), Gaps = 14/215 (6%)
Query: 7 LPKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELF 66
L K+ +GIDEAGRGPVLGPMVY YC +++ L + DSK + E RE +F
Sbjct: 9 LYKFGDEEVRLGIDEAGRGPVLGPMVYAGFYCNKEHEKLLKEMKIDDSKKISEADREMMF 68
Query: 67 EDLKVNDSV---GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTE 123
LK+N+S GW + ++ P+++SAKML K K NLNEISHD+AI +I V+N G LTE
Sbjct: 69 --LKLNNSTLPFGWRIHVLMPQDISAKMLKKQKYNLNEISHDTAISIIDHVINRGCNLTE 126
Query: 124 VYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEE 183
V++DTVG A Y+ KL + FP IK V +KADSLYPVVS ASI AKVTRD ++ W +EE
Sbjct: 127 VFVDTVGKASVYEEKLKKLFPHIKCTVKEKADSLYPVVSAASICAKVTRDFLIKKWKYEE 186
Query: 184 TAENMHRNFGSGYPGD---------HKHIIFGFPS 209
N+ + FGSGYPGD + +FGFP+
Sbjct: 187 PIVNIDKGFGSGYPGDPITKNFLKNNFDSVFGFPT 221
>gi|443898899|dbj|GAC76232.1| ribonuclease HI [Pseudozyma antarctica T-34]
Length = 493
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 113/315 (35%), Positives = 168/315 (53%), Gaps = 44/315 (13%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVND 73
PC +G+DEAGRGPVLGP+VYG YCP +YQ +L + FADSK L ++R++L L +D
Sbjct: 84 PCALGVDEAGRGPVLGPLVYGIAYCPVAYQDSLKQIGFADSKALTADRRDQLLSALIDHD 143
Query: 74 S-VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
+ +GWAV ++ P+++SA ML + INLN S + + LI VL G+ +TE+Y+DTVGD
Sbjct: 144 NHLGWAVRVMSPQDISAGMLRRRPINLNAQSSQATVSLIAGVLEQGVDVTEIYVDTVGDP 203
Query: 133 EKYQAKLSQRF---PSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIF-EETAENM 188
+ Y LS F P IK+ V+ KAD++YP+V ASI AKVTRDR + W + E+ A
Sbjct: 204 KSYARLLSSHFPRHPHIKWTVTSKADAIYPIVGAASIAAKVTRDRCIENWKYAEQPAPAP 263
Query: 189 HR------------------------------NFGSGYPGDHKHI---------IFGFPS 209
H GSGYPGD + +FG+P
Sbjct: 264 HTVLGDSTNRPAASVGEPTKRRIDSDVWDRMGALGSGYPGDPNTVAYLKRTLDPVFGWPG 323
Query: 210 LVRFSWGTCTSHFKDIVEVLWESDEMDEDVSSRRSGKRQLKLSDIGFSSSKRRSEEIESS 269
+VRFSW T + ++ ++ S + + + +R + + S I +++ +S+ S
Sbjct: 324 IVRFSWATAKTMLEEKIKPATASLDTEPVLGGKRLTRSLSRTSSIADATTALQSDAEASV 383
Query: 270 GKGRCKFLEARKLEQ 284
+ L L Q
Sbjct: 384 AATQAVSLYGTPLPQ 398
>gi|342319084|gb|EGU11035.1| Ribonuclease [Rhodotorula glutinis ATCC 204091]
Length = 346
Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 108/220 (49%), Positives = 136/220 (61%), Gaps = 19/220 (8%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFED-LKVNDS 74
++G+DEAGRGP LGP VYG +C SY+ TL + FADSKTL + REELF+D L+ D
Sbjct: 77 MLGVDEAGRGPALGPQVYGIAFCQLSYESTLKEMGFADSKTLTDPLREELFKDILEHKDD 136
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
V +AV ++ P ++S ML K NLN SHD I LI V+ G + + ++DTVG A
Sbjct: 137 VKYAVTVMSPNDISMGMLRKVPYNLNAQSHDVTINLIREVVERGYKIKQCFVDTVGPAAD 196
Query: 135 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH----- 189
YQ+KLS FP+I F V+ KAD+L+P+VS ASIVAKVTRDR L W F E
Sbjct: 197 YQSKLSSFFPTINFTVTSKADALFPIVSAASIVAKVTRDRILEEWCFAEPGVGEKGEGEE 256
Query: 190 ----RNFGSGYPGDHKHI---------IFGFPSLVRFSWG 216
R FGSGYP D K + IFGFP++ RFSW
Sbjct: 257 GEAVRVFGSGYPSDPKTVAWLQDNFNPIFGFPNVARFSWA 296
>gi|393221211|gb|EJD06696.1| hypothetical protein FOMMEDRAFT_165421 [Fomitiporia mediterranea
MF3/22]
Length = 336
Score = 204 bits (520), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 104/221 (47%), Positives = 137/221 (61%), Gaps = 14/221 (6%)
Query: 11 ASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLK 70
A P I+G+DEAGRGP LGPMVYG YCP SY+ L L FADSK L + R L E L
Sbjct: 65 AKGPYILGVDEAGRGPALGPMVYGVAYCPVSYKGQLEELGFADSKALTHDNRAGLLEILS 124
Query: 71 VN-DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 129
+ +++GW+V +I P+ +S+ ML + NLN+ + ++ I LI VL+ GI+L+EVY+D +
Sbjct: 125 SDPENLGWSVRVISPQAISSGMLRRPPTNLNKQAENATITLIQEVLDRGIVLSEVYVDAL 184
Query: 130 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH 189
G+ Y+ LS FP+I F V+ KADS + +V ASI AKVTRD + GW FEE +
Sbjct: 185 GNTTTYEKHLSNLFPNISFTVTAKADSKFKIVGAASIAAKVTRDAWITGWAFEEHESSPQ 244
Query: 190 RNF----GSGYPGDHK---------HIIFGFPSLVRFSWGT 217
+ GSGYP D K FG+PSL RFSWGT
Sbjct: 245 YTWPDERGSGYPSDPKTQAWLRDAVEPTFGYPSLARFSWGT 285
>gi|341896396|gb|EGT52331.1| hypothetical protein CAEBREN_16035 [Caenorhabditis brenneri]
gi|341900120|gb|EGT56055.1| CBN-RNH-2 protein [Caenorhabditis brenneri]
Length = 297
Score = 204 bits (520), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 111/236 (47%), Positives = 141/236 (59%), Gaps = 15/236 (6%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFE----DL 69
PC++GIDEAGRGPVLGPMVY P L L DSK L E KREE+FE D
Sbjct: 21 PCVLGIDEAGRGPVLGPMVYAAAISPLDQNDELKALGVDDSKALNEAKREEIFEKMNNDE 80
Query: 70 KVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 129
++ V +A+ + P +S+ ML + K +LNE+SHD+AI LI LN + + E+ +DTV
Sbjct: 81 EIQQLVAYALRALSPELISSSMLKRQKYSLNEVSHDAAIALIRDALNCNVNVVEIKVDTV 140
Query: 130 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENM- 188
G YQAKL + FP I V++KADSL+P+VS ASI AKVTRD L+ W F+E +
Sbjct: 141 GPKATYQAKLEKLFPGISICVTEKADSLFPIVSAASIAAKVTRDHRLKHWEFKEKNVKVP 200
Query: 189 HRNFGSGYPGDHK---------HIIFGFPSLVRFSWGTCTSHF-KDIVEVLWESDE 234
FGSGYPGD + +FGF SLVR SW T ++ K V WE DE
Sbjct: 201 DAGFGSGYPGDPNTKKFLQLSVNPVFGFCSLVRSSWKTASTIVEKRCVPGYWEDDE 256
>gi|321262130|ref|XP_003195784.1| ribonuclease HI large subunit [Cryptococcus gattii WM276]
gi|317462258|gb|ADV23997.1| Ribonuclease HI large subunit, putative [Cryptococcus gattii WM276]
Length = 260
Score = 203 bits (517), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 104/211 (49%), Positives = 137/211 (64%), Gaps = 13/211 (6%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
IMGIDEAGRGPVLGPMVY YCP S++ TL ++ F DSK L E R+ L+E +V+ +
Sbjct: 38 IMGIDEAGRGPVLGPMVYAAAYCPLSFKPTLESIGFDDSKALSAETRQRLWETFEVHSPL 97
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
++ + P+++S+ ML K INLN + DS +GLI LN GI +TE Y+D +G A ++
Sbjct: 98 CYSSSTLSPQDISSSMLRKVPINLNRQAEDSTVGLIQAALNRGINVTECYVDALGPAPQW 157
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 195
QA+L+ FP+IKF V KADSL+ +V ASIVAKVTRDR + GW E E + R GSG
Sbjct: 158 QARLTAIFPTIKFTVCPKADSLFKIVGAASIVAKVTRDRYVHGW--SEDEEEVIR--GSG 213
Query: 196 YPGDHK---------HIIFGFPSLVRFSWGT 217
YP D K +FG+ +VRFSW T
Sbjct: 214 YPSDPKTQAYLKKSIDPVFGYKGIVRFSWAT 244
>gi|426199388|gb|EKV49313.1| hypothetical protein AGABI2DRAFT_149543 [Agaricus bisporus var.
bisporus H97]
Length = 300
Score = 203 bits (516), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 106/221 (47%), Positives = 136/221 (61%), Gaps = 14/221 (6%)
Query: 11 ASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLK 70
A P I+G+DEAGRGPVLGP+VYG YCP S++ L L FADSKTL E R LF+ L
Sbjct: 29 AEGPYILGVDEAGRGPVLGPLVYGVAYCPVSFKGKLEGLGFADSKTLAAEARSSLFDTLS 88
Query: 71 VNDS-VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 129
S +GW+V +I P+ +S+ M+ + INLN S ++ LI L G+ LTEVY+D +
Sbjct: 89 SEPSNLGWSVRVICPQAISSGMMKRPPINLNVQSREATFLLIRETLAKGVQLTEVYVDAL 148
Query: 130 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAEN-- 187
G+ Y+ LS+ FP I F V+ KADS + +V AS+ AKVTRD + W FEETA N
Sbjct: 149 GNTTTYEKDLSELFPGITFTVTTKADSKFKIVGAASVAAKVTRDACIECWHFEETAGNDQ 208
Query: 188 --MHRNFGSGYPGDHKHII---------FGFPSLVRFSWGT 217
++ FGSGYP D I FGFP +VRFSW T
Sbjct: 209 VEWNKAFGSGYPSDPNTQIWLKENVEPTFGFPKVVRFSWTT 249
>gi|308509890|ref|XP_003117128.1| CRE-RNH-2 protein [Caenorhabditis remanei]
gi|308242042|gb|EFO85994.1| CRE-RNH-2 protein [Caenorhabditis remanei]
Length = 323
Score = 203 bits (516), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 112/245 (45%), Positives = 144/245 (58%), Gaps = 15/245 (6%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFE----DL 69
PC++GIDEAGRGPVLGPMVY P L L DSK L E KREE+F+ D
Sbjct: 47 PCVLGIDEAGRGPVLGPMVYAAAISPLDQNTELKNLGVDDSKALNEAKREEIFDKMNNDE 106
Query: 70 KVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 129
++ V +A+ + P +SA ML ++K +LNE+SHD+AI LI + + E+ +DTV
Sbjct: 107 EIQQVVAYAIRSLSPELISASMLKRHKYSLNEVSHDAAIALIKDAFACNVNVVEIKVDTV 166
Query: 130 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH 189
G YQAKL + FP I V++KADSL+P+VS ASI AKVTRD LR W F+E +
Sbjct: 167 GPKATYQAKLEKLFPGISICVTEKADSLFPIVSAASIAAKVTRDTRLRNWQFKEKGIRIP 226
Query: 190 RN-FGSGYPGDHK---------HIIFGFPSLVRFSWGTCTSHF-KDIVEVLWESDEMDED 238
N +GSGYPGD IFGF SLVR SW T ++ K V WE DE +
Sbjct: 227 ENGYGSGYPGDPNTKKFLQLSVDPIFGFCSLVRASWKTASAIVEKRSVPGYWEDDEDEGK 286
Query: 239 VSSRR 243
S++
Sbjct: 287 PQSKK 291
>gi|256078514|ref|XP_002575540.1| ribonuclease hi large subunit [Schistosoma mansoni]
gi|353232311|emb|CCD79666.1| putative ribonuclease hi large subunit [Schistosoma mansoni]
Length = 290
Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 127/267 (47%), Positives = 158/267 (59%), Gaps = 20/267 (7%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFED-LKVNDS 74
++GIDEAGRGPVLGPMVY C P S L T+ ADSKTL E +RE+L ++ L D
Sbjct: 1 MLGIDEAGRGPVLGPMVYACALSPISQLNELETIGLADSKTLNENQREKLLKEMLNKCDW 60
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
+ V +I P ++ KML+K+K +LN ISHDSAI LI VL+ G+ L EVY+DTVG AE
Sbjct: 61 ISAVVHVISPVYITEKMLDKSKTSLNVISHDSAIQLIQSVLDSGVNLVEVYVDTVGKAEH 120
Query: 135 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH-RNFG 193
Y+ KL FP +K V KAD YP+VS ASI AKVTRDR L+ W EE G
Sbjct: 121 YETKLQNLFPQLKIRVESKADDTYPIVSAASIFAKVTRDRVLQMWPKEERGSVPEGTGLG 180
Query: 194 SGYPGDH---------KHIIFGFPSLVRFSWGTCTSHF-KDIVEVLWESDEMDEDV---- 239
SGYPGD +FGFPSLVR SW T +S + V V WE DE E+V
Sbjct: 181 SGYPGDPVTKSYLRACMDPVFGFPSLVRSSWSTSSSLLDQHGVSVRWEDDETHEEVLQAK 240
Query: 240 ---SSRRSGKRQLKLSDIGFSSSKRRS 263
R K KLS+ F++++ +S
Sbjct: 241 KLARKREHSKGTCKLSNF-FNNAQSKS 266
>gi|391332532|ref|XP_003740688.1| PREDICTED: ribonuclease H2 subunit A-like [Metaseiulus
occidentalis]
Length = 295
Score = 200 bits (509), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 113/229 (49%), Positives = 141/229 (61%), Gaps = 15/229 (6%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
C++GIDEAGRGPVLGPMVYG Y P S + + DSK L E RE+LFE ++
Sbjct: 30 CVLGIDEAGRGPVLGPMVYGTAYWPLSKSKHFGEMGLDDSKVLSEADREKLFELYNKENA 89
Query: 75 V-GWAVDIIDPRELSAKMLNKN--KINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGD 131
+ GW + I P +S ML K+ + +LNE+SH++AI LI L G+ +TEVY+DTVG
Sbjct: 90 ISGWHLVCISPVTISKSMLAKDNQRESLNELSHNAAIHLIRVTLRRGVRVTEVYVDTVGP 149
Query: 132 AEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRN 191
EKY+AKL FP IK VSKKADSL+ VS ASI AKV RDR L+ W + E +
Sbjct: 150 PEKYEAKLQALFPEIKITVSKKADSLFKCVSAASICAKVARDRALKSWSWREG--TTYEK 207
Query: 192 FGSGYPGD---HKHI------IFGFPSLVRFSWGTCTSHF-KDIVEVLW 230
GSGYPGD K + IFGFPS+ RFSW T K+ V+V W
Sbjct: 208 IGSGYPGDPVTKKFLRDSCDPIFGFPSVTRFSWSTAEDLLAKEHVKVQW 256
>gi|159467162|ref|XP_001691767.1| predicted protein [Chlamydomonas reinhardtii]
gi|158279113|gb|EDP04875.1| predicted protein [Chlamydomonas reinhardtii]
Length = 266
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 102/237 (43%), Positives = 147/237 (62%), Gaps = 19/237 (8%)
Query: 9 KWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFED 68
+W PCI+G+DEAGRGPVLGPMVY C + S +++ +ADSKTL E RE+LF+
Sbjct: 30 EWTKAPCILGVDEAGRGPVLGPMVYACAFT--SVSTDISSRGYADSKTLTHETREKLFKA 87
Query: 69 LKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDT 128
+ + VGW I+ + +S ML ++K +LN ++ D+ +I R L G VY+DT
Sbjct: 88 IDADSGVGWVAHIMSAQFISGHMLGRDKTSLNALAFDATCAIIRRALESG---ANVYVDT 144
Query: 129 VGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENM 188
VGDA++++ +LS+ FP + F V KADSLYP+VS ASIVAKV RD++L + + +
Sbjct: 145 VGDADRHRDRLSRAFPGLDFTVCPKADSLYPIVSAASIVAKVIRDKSLTD---SQKSLGL 201
Query: 189 HRNFGSGYPGD---------HKHIIFGFPSLVRFSWGTCTSHFK--DIVEVLWESDE 234
G+GYPGD H H ++GFP LVR SW TC+ + + V + +E+DE
Sbjct: 202 TGEVGTGYPGDSATTTWLKQHMHPLWGFPRLVRHSWETCSRMLEPPEGVGLKFEADE 258
>gi|449540326|gb|EMD31319.1| hypothetical protein CERSUDRAFT_163191 [Ceriporiopsis subvermispora
B]
Length = 318
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 105/252 (41%), Positives = 140/252 (55%), Gaps = 26/252 (10%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL-KVN 72
P I+G+DEAGRGPVLGPMVYG YCP SY+ L + F DSK LK E R L + L +
Sbjct: 38 PYILGVDEAGRGPVLGPMVYGVAYCPASYKDRLEDMGFDDSKALKPETRASLLKTLCSDS 97
Query: 73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
+++ W+V ++ P+ +S ML + +NLN + + I LI VL GI L+E+Y+D +G+
Sbjct: 98 ENLAWSVRVLSPQGISNGMLRRPPVNLNRQAEQATILLIREVLQSGIQLSEIYVDALGNT 157
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENM---- 188
E YQ LS++FP I V KADSL+ +V AS+ AKVTRD + GW FEE +
Sbjct: 158 ETYQTYLSKQFPGINITVKAKADSLFKIVGAASVAAKVTRDAWIEGWKFEEQRPQLVATP 217
Query: 189 ------------HRNFGSGYPGDHK---------HIIFGFPSLVRFSWGTCTSHFKDIVE 227
FGSGYP D K FGFPS VRFSW T +
Sbjct: 218 GASLSTVLNPSWGEEFGSGYPSDPKTKAWISKSLEPTFGFPSFVRFSWTTVKNELDKSAH 277
Query: 228 VLWESDEMDEDV 239
+ +DE +E +
Sbjct: 278 AVTWTDEGNESL 289
>gi|403220433|dbj|BAM38566.1| ribonuclease [Theileria orientalis strain Shintoku]
Length = 284
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 113/239 (47%), Positives = 143/239 (59%), Gaps = 20/239 (8%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLN---FADSKTLKEEKREELFEDL-K 70
I+GIDEAGRGPVLGPMVYG +CP T N DSK L E RE F L K
Sbjct: 23 VILGIDEAGRGPVLGPMVYGGFFCPKGPDSTSILKNKIRVDDSKKLTEAYRENKFHLLNK 82
Query: 71 VNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG 130
G ++I P+ +S KML +NK NLNEISH++AI +I V+++G L EVY+D VG
Sbjct: 83 PEYPFGMIAEVITPQYISYKMLQRNKYNLNEISHETAISIIRHVISLGYNLKEVYIDAVG 142
Query: 131 DAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHR 190
KYQ+KLS+ FP I F V +KADS+YP VS ASI+AKV RD +R W + +N+
Sbjct: 143 TVSKYQSKLSKLFPKISFSVREKADSIYPTVSAASIIAKVIRDNMIRAWRLDPIVKNI-- 200
Query: 191 NFGSGYPGD---------HKHIIFGFPSLVRFSWGTCTSHFK--DIVEVLW-ESDEMDE 237
GSGYPGD + +FGFP +VRFSW T + + + V V W + D DE
Sbjct: 201 --GSGYPGDPSTKEFLTGNMDKVFGFPDIVRFSWSTAKNLLEGSEGVPVEWYDPDPEDE 257
>gi|71031853|ref|XP_765568.1| ribonuclease H1 large subunit [Theileria parva strain Muguga]
gi|68352525|gb|EAN33285.1| ribonuclease H1 large subunit, putative [Theileria parva]
Length = 277
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 118/242 (48%), Positives = 146/242 (60%), Gaps = 25/242 (10%)
Query: 12 SNPCIMGIDEAGRGPVLGPMVYGCLYC----PCSYQQTLAT-LNFADSKTLKEEKREELF 66
S+ I+GIDEAGRGPVLGPMVYG +C C + L + DSK L E RE F
Sbjct: 21 SDEVILGIDEAGRGPVLGPMVYGGFFCIKGDDC--KSILKNKIRVDDSKKLTETMRENKF 78
Query: 67 EDLK-VNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVY 125
L N G ++I P+ +S KML ++K NLNEISHD+AI +I VL+ G L EVY
Sbjct: 79 YQLNDPNYPFGVVAEVITPQYISYKMLQRDKYNLNEISHDTAISIIRHVLDHGYNLKEVY 138
Query: 126 LDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETA 185
+D VG KY+AKLS+ FP I F V +KADS+YP VS ASIVAKV RD ++ W F+
Sbjct: 139 IDAVGTVNKYEAKLSKLFPKIHFSVREKADSIYPTVSAASIVAKVIRDNIIKNWKFDFEV 198
Query: 186 ENMHRNFGSGYPGD---------HKHIIFGFPSLVRFSWGTCTSHF---KDIVEVLWESD 233
EN+ GSGYPGD + IFGFP +VR+SW T SH D VEV W +
Sbjct: 199 ENI----GSGYPGDPYTKDFLTNNMDKIFGFPDIVRYSWSTA-SHLLNGPDGVEVEWYDE 253
Query: 234 EM 235
E+
Sbjct: 254 EI 255
>gi|58271424|ref|XP_572868.1| hypothetical protein [Cryptococcus neoformans var. neoformans
JEC21]
gi|57229127|gb|AAW45561.1| conserved hypothetical protein [Cryptococcus neoformans var.
neoformans JEC21]
Length = 260
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 102/211 (48%), Positives = 136/211 (64%), Gaps = 13/211 (6%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
IMGIDEAGRGPVLGPMVY YCP S++ L ++ F DSK L E R+ L+E V+ +
Sbjct: 38 IMGIDEAGRGPVLGPMVYAAAYCPLSFKPILESIGFDDSKALSAETRQTLWESFGVHPPL 97
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
++ + P+++S+ ML K INLN + D+ +GLI LN GI +TE Y+D +G A ++
Sbjct: 98 CYSSSTLSPQDISSNMLRKVPINLNRQAEDATVGLIQAALNRGINVTECYVDALGPAPQW 157
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 195
QA+L+ FP+IKF V KADSL+ +V ASIVAKVTRDR + GW +E E + R GSG
Sbjct: 158 QARLTAIFPTIKFTVCPKADSLFKIVGAASIVAKVTRDRYVHGWSQDE--EEVIR--GSG 213
Query: 196 YPGDHK---------HIIFGFPSLVRFSWGT 217
YP D K +FG+ +VRFSW T
Sbjct: 214 YPSDPKTQAYLKGSIDPVFGYKGIVRFSWAT 244
>gi|395332583|gb|EJF64962.1| ribonuclease H2 subunit A [Dichomitus squalens LYAD-421 SS1]
Length = 304
Score = 198 bits (503), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 103/235 (43%), Positives = 137/235 (58%), Gaps = 12/235 (5%)
Query: 11 ASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLK 70
A P +G+DEAGRGPVLGP+VYG YCP +Y++ L L F DSKTL + R L E L
Sbjct: 36 APGPYFLGVDEAGRGPVLGPLVYGVAYCPLAYKEQLEQLGFTDSKTLTAQVRSSLLETLG 95
Query: 71 VND-SVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 129
+ ++GW+V ++ P+++SA ML + NLN+ S ++ + LI VL G+ L+EVY+D +
Sbjct: 96 SDPVNLGWSVRVLSPKDISAGMLKRPPTNLNQQSQNATVLLIREVLARGVQLSEVYVDAL 155
Query: 130 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAEN-M 188
G Y+A LS FP I F V KAD + +V AS+ AKVTRD + GW++EE A
Sbjct: 156 GRTTSYEAYLSSLFPDIAFTVQAKADLTFKIVGAASVAAKVTRDAWIDGWVYEERAPGKW 215
Query: 189 HRNFGSGYPGDHK---------HIIFGFPSLVRFSWGTCTSHF-KDIVEVLWESD 233
+ GSGYP D K FG+PS RFSW T KD V W D
Sbjct: 216 AQETGSGYPSDPKTQAWIRSSLEPTFGYPSFARFSWATIKVALEKDGHAVEWIDD 270
>gi|409048828|gb|EKM58306.1| hypothetical protein PHACADRAFT_182662 [Phanerochaete carnosa
HHB-10118-sp]
Length = 294
Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 106/237 (44%), Positives = 136/237 (57%), Gaps = 30/237 (12%)
Query: 11 ASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLK 70
A P I+G+DEAGRGPVLGP+VYG YCP SY++ L L FADSKTL R L + L
Sbjct: 29 AEGPYILGVDEAGRGPVLGPLVYGVAYCPASYKEDLDKLGFADSKTLNASTRSSLLDTLS 88
Query: 71 VNDS-VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 129
+ + +GW+V ++ P+ +SA ML INLN S D+ I LI VL G+ L+EVY+D +
Sbjct: 89 SDPANIGWSVRVLAPQAISAGMLRHPPINLNRQSEDATILLIREVLESGVKLSEVYVDAL 148
Query: 130 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH 189
G + ++ LS FP I F V+ KADS + +VS AS+ AKVTRD + GW+FEE +
Sbjct: 149 GPPQAWEKALSTMFPGISFTVTAKADSKFKIVSAASVAAKVTRDAWIEGWMFEEAYVSEE 208
Query: 190 RN--------------------FGSGYPGDHKHI---------IFGFPSLVRFSWGT 217
GSGYPGD K + FGFPSL RFSW T
Sbjct: 209 EEEEEEEGSAEKVMDETKWGGPIGSGYPGDPKTVAWIQSSLEPTFGFPSLARFSWTT 265
>gi|17536263|ref|NP_495796.1| Protein RNH-2 [Caenorhabditis elegans]
gi|11387113|sp|Q9U6P6.1|RNH2A_CAEEL RecName: Full=Ribonuclease H2 subunit A; Short=RNase H2 subunit A;
AltName: Full=RNase H(35); AltName: Full=Ribonuclease HI
large subunit; Short=RNase HI large subunit; AltName:
Full=Ribonuclease HI subunit A
gi|6010657|gb|AAF01208.1|AF181619_1 putative ribonuclease H2 large subunit [Caenorhabditis elegans]
gi|15718212|emb|CAC70103.1| Protein RNH-2 [Caenorhabditis elegans]
Length = 297
Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 110/245 (44%), Positives = 141/245 (57%), Gaps = 15/245 (6%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELF----EDL 69
PC++GIDEAGRGPVLGPMVY P L L DSK L E KREE+F ED
Sbjct: 21 PCVLGIDEAGRGPVLGPMVYAAAISPLDQNVELKNLGVDDSKALNEAKREEIFNKMNEDE 80
Query: 70 KVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 129
+ + +A+ + P +S ML + K +LNE+SH++AI LI L + + E+ +DTV
Sbjct: 81 DIQQIIAYALRCLSPELISCSMLKRQKYSLNEVSHEAAITLIRDALACNVNVVEIKVDTV 140
Query: 130 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIF-EETAENM 188
G YQAKL + FP I V++KADSL+P+VS ASI AKVTRD LR W F E+ +
Sbjct: 141 GPKATYQAKLEKLFPGISICVTEKADSLFPIVSAASIAAKVTRDSRLRNWQFREKNIKVP 200
Query: 189 HRNFGSGYPGDHK---------HIIFGFPSLVRFSWGTCTSHF-KDIVEVLWESDEMDED 238
+GSGYPGD +FGF SLVR SW T ++ K V WE DE +
Sbjct: 201 DAGYGSGYPGDPNTKKFLQLSVEPVFGFCSLVRSSWKTASTIVEKRCVPGSWEDDEEEGK 260
Query: 239 VSSRR 243
S+R
Sbjct: 261 SQSKR 265
>gi|84999888|ref|XP_954665.1| ribonuclease h1 large subunit [Theileria annulata]
gi|65305660|emb|CAI73985.1| ribonuclease h1 large subunit, putative [Theileria annulata]
Length = 277
Score = 197 bits (501), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 114/239 (47%), Positives = 144/239 (60%), Gaps = 21/239 (8%)
Query: 12 SNPCIMGIDEAGRGPVLGPMVYGCLYCP----CSYQQTLATLNFADSKTLKEEKREELFE 67
S+ I+GIDEAGRGPVLGPMVYG +C C+ + DSK L E RE F
Sbjct: 21 SDYVILGIDEAGRGPVLGPMVYGGFFCTKGDNCN-SILKNKIKVDDSKKLSESMRENKFY 79
Query: 68 DLKVND-SVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYL 126
L D G ++I P+ +S KML + K NLNEISHD+AI +I VL+ G L EVY+
Sbjct: 80 QLNDPDHPFGVVAEVITPQYISYKMLQREKYNLNEISHDTAISIIRHVLSHGYNLKEVYI 139
Query: 127 DTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAE 186
D VG KY++KLS+ FP I+F V +KADS+YP VS ASIVAKV RD ++ W F+ E
Sbjct: 140 DAVGTVNKYESKLSKMFPKIQFSVREKADSIYPTVSAASIVAKVIRDNIIKTWKFDFEVE 199
Query: 187 NMHRNFGSGYPGD---------HKHIIFGFPSLVRFSWGTCTSHFK--DIVEVLWESDE 234
N+ GSGYPGD + IFGFP +VRFSW T ++ + VEV W +E
Sbjct: 200 NI----GSGYPGDPYTKDFLTKNMDKIFGFPDIVRFSWSTASNLLNGSESVEVDWYDEE 254
>gi|170099025|ref|XP_001880731.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164644256|gb|EDR08506.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 302
Score = 196 bits (499), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 101/222 (45%), Positives = 132/222 (59%), Gaps = 15/222 (6%)
Query: 11 ASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLK 70
A P I+G+DEAGRGPVLGP+VYG YCP SY++ + L FADSKTL + R L L
Sbjct: 30 APGPYIVGVDEAGRGPVLGPLVYGIAYCPASYKEDMEELGFADSKTLNSDTRLSLLNTLS 89
Query: 71 VN-DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 129
+++GW+V ++ P+ +S+ ML + NLN S D+ I L+ VL GI ++EVY+D +
Sbjct: 90 SQPENLGWSVRVVSPQAISSGMLCRPPTNLNRQSQDATILLLREVLAKGIQVSEVYVDAL 149
Query: 130 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAEN-- 187
G Y+A LS FP I F V+ KADS + +V AS+ AKVTRD + GW FEE
Sbjct: 150 GTTTTYEAYLSSLFPGIDFTVTTKADSKFKIVGAASVAAKVTRDACVEGWTFEENIGKEG 209
Query: 188 ---MHRNFGSGYPGDHK---------HIIFGFPSLVRFSWGT 217
+ GSGYP D +FGFP LVRFSW T
Sbjct: 210 DKWSNATLGSGYPSDPNTQAWLKGSVDPVFGFPKLVRFSWTT 251
>gi|312067297|ref|XP_003136676.1| ribonuclease HI large subunit [Loa loa]
Length = 303
Score = 196 bits (498), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 107/242 (44%), Positives = 150/242 (61%), Gaps = 16/242 (6%)
Query: 11 ASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLK 70
+S PC++GIDEAGRGPVLGPMVY C + + L + DSK L E KRE++FE ++
Sbjct: 26 SSMPCVVGIDEAGRGPVLGPMVYACAVTLVNNENILLEMGVDDSKVLTEAKREKIFERME 85
Query: 71 ---VNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLD 127
+++ G+A I + +SA ML + K +LN++SHD A L+ ++ I + EVY+D
Sbjct: 86 GDNMSELFGYAHCSISAQMISAAMLGRTKCSLNKLSHDCATELLKLAIDNNINVVEVYVD 145
Query: 128 TVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAEN 187
TVG YQA L ++FP ++ +VS+KAD+ +P+VS ASIVAKV RDR LR W F E N
Sbjct: 146 TVGPKGPYQAMLHKKFPDMQIIVSEKADAKFPIVSAASIVAKVKRDRALRNWTFPEGIIN 205
Query: 188 MHRN-FGSGYPGDHK----------HIIFGFPSLVRFSWGTCTSHFK-DIVEVLWESDEM 235
+ N +GSGYPGD H +FG+P+LVRFSW T V+ W+ E+
Sbjct: 206 VPPNGYGSGYPGDPNTKNFLLGAIDH-VFGYPNLVRFSWKTAEVLLHGKTVKCTWKCLEV 264
Query: 236 DE 237
+E
Sbjct: 265 NE 266
>gi|393910380|gb|EFO27394.2| ribonuclease HI large subunit [Loa loa]
Length = 305
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 102/220 (46%), Positives = 141/220 (64%), Gaps = 13/220 (5%)
Query: 11 ASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLK 70
+S PC++GIDEAGRGPVLGPMVY C + + L + DSK L E KRE++FE ++
Sbjct: 26 SSMPCVVGIDEAGRGPVLGPMVYACAVTLVNNENILLEMGVDDSKVLTEAKREKIFERME 85
Query: 71 ---VNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLD 127
+++ G+A I + +SA ML + K +LN++SHD A L+ ++ I + EVY+D
Sbjct: 86 GDNMSELFGYAHCSISAQMISAAMLGRTKCSLNKLSHDCATELLKLAIDNNINVVEVYVD 145
Query: 128 TVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAEN 187
TVG YQA L ++FP ++ +VS+KAD+ +P+VS ASIVAKV RDR LR W F E N
Sbjct: 146 TVGPKGPYQAMLHKKFPDMQIIVSEKADAKFPIVSAASIVAKVKRDRALRNWTFPEGIIN 205
Query: 188 MHRN-FGSGYPGDHK---------HIIFGFPSLVRFSWGT 217
+ N +GSGYPGD +FG+P+LVRFSW T
Sbjct: 206 VPPNGYGSGYPGDPNTKNFLLGAIDHVFGYPNLVRFSWKT 245
>gi|403414687|emb|CCM01387.1| predicted protein [Fibroporia radiculosa]
Length = 317
Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 103/230 (44%), Positives = 135/230 (58%), Gaps = 23/230 (10%)
Query: 11 ASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLK 70
A P I+G+DEAGRGPVLGP+VYG YCP +YQ+ L +L FADSKTL R L + L
Sbjct: 37 AIGPYILGVDEAGRGPVLGPLVYGVAYCPTAYQEDLDSLGFADSKTLTAGTRSSLLQTLC 96
Query: 71 VNDS-VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 129
+ + +GW+V ++ P+ +S+ ML + NLN S + + LI VL GI L++VY+D +
Sbjct: 97 SDPANLGWSVRVLCPQAISSGMLRRPPTNLNRQSEQATVLLIREVLQHGIKLSDVYVDAL 156
Query: 130 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEE------ 183
G + Y+A LS +FP I F V+ KADS + +V AS+ AKVTRD + W FEE
Sbjct: 157 GPTKTYEAYLSSQFPGINFTVTAKADSKFKIVGAASVAAKVTRDAWVEDWTFEESSSPHD 216
Query: 184 -------TAENMHRNFGSGYPGDHK---------HIIFGFPSLVRFSWGT 217
T + GSGYP D K FGFPSLVRFSW T
Sbjct: 217 AESNSKPTNTRWGKELGSGYPSDPKTQAWIKGSLDPTFGFPSLVRFSWTT 266
>gi|281202692|gb|EFA76894.1| hypothetical protein PPL_09646 [Polysphondylium pallidum PN500]
Length = 1257
Score = 194 bits (493), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 114/254 (44%), Positives = 154/254 (60%), Gaps = 24/254 (9%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVN-DSV 75
MGIDEAGRGPVLGP+VY Y P + + L F DSK L E +RE LF+ + N + +
Sbjct: 995 MGIDEAGRGPVLGPLVYAACYVPDCNLERMRKLRFDDSKKLTEAQRETLFKTILGNYELL 1054
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
G+ D+ +P LS KML+K +++L+ ISH SA LI +VL+ G + +Y+DTVG KY
Sbjct: 1055 GFVSDVNEPSMLSEKMLSKQQVSLDSISHGSAFNLIQQVLDKGYNIESLYVDTVGPPAKY 1114
Query: 136 QAKLSQRFPSIK-FVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAEN------- 187
+AK+ FPSIK VVSKKADSLYP+VS ASI AKV RDR ++ FE+ N
Sbjct: 1115 EAKIRVAFPSIKNVVVSKKADSLYPIVSAASICAKVIRDRIIKATDFEKYGSNASGQNAP 1174
Query: 188 MHRNFGSGYPGD---------HKHIIFGFPSLVRFSWGTCTSHFK-DIVEVLWESDEMDE 237
++ N GSGYP D ++ +FG+P +VRFSW T ++ + D V W + +
Sbjct: 1175 INTNIGSGYPSDPATKSWLRNNRDKVFGYPDIVRFSWKTTSTAMQGDCYGVQWVNQQ--- 1231
Query: 238 DVSSRRSGKRQLKL 251
S SGKR+ L
Sbjct: 1232 --SPYFSGKRKRSL 1243
>gi|320582951|gb|EFW97168.1| ribonuclease HI large subunit [Ogataea parapolymorpha DL-1]
Length = 303
Score = 194 bits (493), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 113/245 (46%), Positives = 149/245 (60%), Gaps = 27/245 (11%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATL-NFADSKTLKEEKREELFEDLKVN 72
P I+G+DEAGRGPVLGPMVYG YC Y L ++ FADSKTL E+R++L + +
Sbjct: 40 PVILGVDEAGRGPVLGPMVYGIAYCLKDYSSDLKSVYGFADSKTLTVERRDQLMKSIIEP 99
Query: 73 D-----SVGWAVDIIDPRELSAKMLNK---NKINLNEISHDSAIGLITRVLNIGILLTEV 124
D +VGWA + R++S++ML INLNE +HD+ I LI VL+ + L EV
Sbjct: 100 DGDLCQNVGWATTTMTARDISSEMLKPRLIGNINLNEQAHDATIKLIQGVLDQKVNLKEV 159
Query: 125 YLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEET 184
Y+DTVG + YQ KLS RFP IK V+KKADSL+P+VS ASIVAKVTRD +L + +
Sbjct: 160 YVDTVGPPDSYQRKLSSRFPGIKVTVTKKADSLFPIVSTASIVAKVTRDCSL--YYLADG 217
Query: 185 AENMHRNFGSGYPGDHK---------HIIFGFPSLVRFSWGTCTSHF--KDIVEVLWESD 233
A+ +GSGYP D + H +FG+ S+VRFSW T V ++WE +
Sbjct: 218 AD-----WGSGYPSDPRTSQWLNSNVHPVFGWNSMVRFSWQTSRDALVKSGAVPMVWEDE 272
Query: 234 EMDED 238
D
Sbjct: 273 LQTSD 277
>gi|294654510|ref|XP_456567.2| DEHA2A05632p [Debaryomyces hansenii CBS767]
gi|199428939|emb|CAG84523.2| DEHA2A05632p [Debaryomyces hansenii CBS767]
Length = 375
Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 112/247 (45%), Positives = 154/247 (62%), Gaps = 23/247 (9%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLAT-LNFADSKTLKEEKREELF-----E 67
P ++G+DEAGRGPVLGPMVYG Y SY + L T FADSKTLK++KR +LF E
Sbjct: 87 PVVLGVDEAGRGPVLGPMVYGIAYSLESYSKDLQTKYGFADSKTLKDDKRRQLFQMIENE 146
Query: 68 DLKVNDSVGWAVDIIDPRELSAKMLN----KNKINLNEISHDSAIGLITRVLNIGILLTE 123
D +++ VGWA + +++S+ ML K NLNE +HD+ I LI +VL G+ +T+
Sbjct: 147 DHELHGHVGWATTTMTAKDISSGMLQTVLGKGSYNLNEQAHDTTIQLIKQVLAKGVNVTK 206
Query: 124 VYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEE 183
V++DTVG YQAKLS+ FP++ V+KKADS+YP+VS AS+VAKVTRD L +
Sbjct: 207 VFVDTVGPPASYQAKLSKIFPTVAITVAKKADSIYPIVSTASVVAKVTRDLNLHFYNIHL 266
Query: 184 TAENMHRNFGSGYPGD-------HKHI--IFGFP-SLVRFSWGTCTSHFK--DIVEVLWE 231
+ H GSGYP D H ++ +FG+ LVRFSW T + + V V++E
Sbjct: 267 PLIHNHA-LGSGYPSDPNTSKWLHANVDRVFGWCFGLVRFSWQTSKDSLEKNNAVPVVYE 325
Query: 232 SDEMDED 238
+ + ED
Sbjct: 326 AQCIKED 332
>gi|294891483|ref|XP_002773596.1| ribonuclease hi large subunit, putative [Perkinsus marinus ATCC
50983]
gi|239878780|gb|EER05412.1| ribonuclease hi large subunit, putative [Perkinsus marinus ATCC
50983]
Length = 339
Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 120/281 (42%), Positives = 156/281 (55%), Gaps = 37/281 (13%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFED-----LKV 71
+GIDEAGRGPV GPMVYG L + F DSK L E KR ELFED LK
Sbjct: 56 LGIDEAGRGPVFGPMVYGAAISDIRKSDALGKMGFNDSKQLTEAKRSELFEDIHNEALKD 115
Query: 72 NDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGD 131
+ +G+AV ++ E+S KML +NK+NLN ISH++AIGLI L+ GI + EVY+DTVGD
Sbjct: 116 DGVLGFAVHVLTAHEISTKMLRRNKVNLNRISHETAIGLIEHALSEGINVKEVYVDTVGD 175
Query: 132 AEKYQAKLSQRFPS---IKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENM 188
E+YQ KLS F VV KKAD++YP+ S ASI AKV RDR + I +
Sbjct: 176 PERYQNKLSSIFKRRGVDTIVVCKKADAIYPICSAASICAKVIRDRLVEEDI------SY 229
Query: 189 HRNFGSGYPGDHKHI---------IFGFPSLVRFSWGTCTS-HFKDIVEVLWESDEM--- 235
+ GSGYPGD + + +F FP +RFSW T K +E W DE
Sbjct: 230 YPEVGSGYPGDAQTVEWLEKVVDPVFLFPRQIRFSWSTIEEIEKKRALEFDWHDDEYLEG 289
Query: 236 -------DEDVSSRRSGKRQLKLSDIGFSSSKRRSEEIESS 269
D + S RR+ + L+ F+++KR +I +S
Sbjct: 290 NDENKPGDNNSSGRRASQPSLQSM---FNAAKRARRKIFTS 327
>gi|390595476|gb|EIN04881.1| ribonuclease H2 subunit A [Punctularia strigosozonata HHB-11173
SS5]
Length = 341
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 117/283 (41%), Positives = 145/283 (51%), Gaps = 56/283 (19%)
Query: 11 ASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQT-LATLNFADSKTLKEEKREELFEDL 69
A P IMG+DEAGRGPVLGP+VYG YC ++ + L L FADSKTL E R +L E L
Sbjct: 33 APGPYIMGVDEAGRGPVLGPLVYGVAYCTAEFRDSGLQELGFADSKTLTPEVRSQLLETL 92
Query: 70 KVN-DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDT 128
N + + W+V ++ P+ LSA ML INLN S ++ I LI VL GI LTEVY+D
Sbjct: 93 SSNPEKLSWSVRVLCPQALSAGMLRIPPINLNRQSEEATILLIREVLQKGIELTEVYVDA 152
Query: 129 VGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAE-- 186
+G EKY+ LS FP I V KADSL+ +V AS+ AKVTRD L W+FEE E
Sbjct: 153 LGPPEKYEKYLSSVFPGISITVRNKADSLFKIVGAASVAAKVTRDECLENWLFEEGGEPR 212
Query: 187 ----NMHRN----------------------------------FGSGYPGDHKHI----- 203
+H GSGYPGD K +
Sbjct: 213 PIPRTVHEAPEETPLVEHPSDADQSGAQKDVDMESTQDPWGSVLGSGYPGDPKTVAWMDC 272
Query: 204 ----IFGFPSLVRFSWGTCTSHFKDIV-EVLWESDEMDEDVSS 241
+FG+PS+ RFSW T + EV W MDE +S
Sbjct: 273 SLDPVFGYPSVARFSWSTIKNRLAQKAHEVKW----MDEGQAS 311
>gi|254565155|ref|XP_002489688.1| Ribonuclease H2 catalytic subunit, removes RNA primers during
Okazaki fragment synthesis [Komagataella pastoris GS115]
gi|238029484|emb|CAY67407.1| Ribonuclease H2 catalytic subunit, removes RNA primers during
Okazaki fragment synthesis [Komagataella pastoris GS115]
gi|328350107|emb|CCA36507.1| ribonuclease H2 subunit A [Komagataella pastoris CBS 7435]
Length = 314
Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 114/266 (42%), Positives = 144/266 (54%), Gaps = 24/266 (9%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVND 73
PC +G+DEAGRGPV+GPMVYG YC Y+ L FADSKTL E+KR EL E L D
Sbjct: 49 PCCLGVDEAGRGPVVGPMVYGVSYCLEEYEPRLKDFGFADSKTLTEQKRSELLESLCNGD 108
Query: 74 -----SVGWAVDIIDPRELSAKMLNKNKI---NLNEISHDSAIGLITRVLNIGILLTEVY 125
+VGWA I ++S+ ML + I NLNE +HD + LI +V+ G+ L VY
Sbjct: 109 HELRKNVGWATTSISACDISSAMLKPHNIGNYNLNEQAHDVTMELIDKVIQKGVNLRHVY 168
Query: 126 LDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETA 185
+DTVG YQ KL QRFP++ VSKKAD++YP VS AS+ AKVTRD LR
Sbjct: 169 VDTVGPPASYQKKLQQRFPALLITVSKKADAIYPCVSSASVCAKVTRDVCLR----TSNG 224
Query: 186 ENMHRNFGSGYPGDHK---------HIIFGFPSLVRFSWGT---CTSHFKDIVEVLWESD 233
E + GSGYP D H +FG+ VRFSW T C I V E +
Sbjct: 225 EENLLDCGSGYPSDPNTKKWLAQSIHPLFGWSRDVRFSWQTAKDCLERHNSIKVVFGEEE 284
Query: 234 EMDEDVSSRRSGKRQLKLSDIGFSSS 259
+ K++ D+ S+S
Sbjct: 285 PTPVNFGDLGLSKQKTDFKDLEISTS 310
>gi|50551451|ref|XP_503199.1| YALI0D23661p [Yarrowia lipolytica]
gi|49649067|emb|CAG81399.1| YALI0D23661p [Yarrowia lipolytica CLIB122]
Length = 315
Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 107/232 (46%), Positives = 144/232 (62%), Gaps = 27/232 (11%)
Query: 13 NPCIMGIDEAGRGPVLGPMVYGCLYCPCSY-QQTLATLNFADSKTLKEEKREELFEDLKV 71
PCI+G+DEAGRGPVLG MVYG YC + + L+ FADSKTL EKR L ++
Sbjct: 40 KPCILGVDEAGRGPVLGSMVYGLAYCTKEFADEELSKTGFADSKTLTAEKRSALMREICC 99
Query: 72 NDSV----GWAVDIIDPRELSAKML---NKNKINLNEISHDSAIGLITRVLNIGILLTEV 124
++++ GW + +++S+ ML ++ NLN+ +HD+ + LI VL+ G+LLTE
Sbjct: 100 DETLVEHLGWCTTSMTAQDISSAMLRPMSRGVYNLNDQAHDTTMALIQGVLDRGVLLTEA 159
Query: 125 YLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEET 184
Y+DTVG Y AKLS++FP IKF V+KKADSL+P+VS ASI AKVTRD L+ E
Sbjct: 160 YIDTVGPPASYTAKLSKQFPHIKFTVTKKADSLFPIVSAASICAKVTRDMDLKSQDLSEG 219
Query: 185 AENMHRNFGSGYPGDHK-------HI--IFGFPSLVRFSWGTCTSHFKDIVE 227
+GSGYP D K H+ +FG+ +VRFSW T KD+VE
Sbjct: 220 ------TWGSGYPSDPKTSVWLKSHVDQVFGWMPVVRFSWQTA----KDLVE 261
>gi|406606142|emb|CCH42502.1| Ribonuclease H2 subunit A [Wickerhamomyces ciferrii]
Length = 343
Score = 191 bits (485), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 106/245 (43%), Positives = 148/245 (60%), Gaps = 22/245 (8%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLAT-LNFADSKTLKEEKREELFEDL--- 69
PC++G+DEAGRGPVLGPMVYG YC +Y+ L + FADSKTL E KR L + +
Sbjct: 66 PCVLGVDEAGRGPVLGPMVYGISYCLKNYESILKSKYGFADSKTLNELKRTNLLKQICDQ 125
Query: 70 --KVNDSVGWAVDIIDPRELSAKMLNKNKI---NLNEISHDSAIGLITRVLNIGILLTEV 124
++ + +GW+ + ++S+ ML + NLNE +HD+ + LI VL+ G+ LTE+
Sbjct: 126 EGELFEQIGWSTRTMTAMDISSGMLRPPSVGNYNLNEQAHDATMDLIQGVLDQGVNLTEI 185
Query: 125 YLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEET 184
++DTVG YQAKL +RFP++K +V+KKADS+YP+VS ASI AKVTRD +L ++
Sbjct: 186 FVDTVGPPVTYQAKLQKRFPNLKIIVAKKADSIYPIVSAASICAKVTRDFSLNN--SKDQ 243
Query: 185 AENMHRNFGSGYPGDHK---------HIIFGFPSLVRFSWGTCTSHF--KDIVEVLWESD 233
+GSGYP D IFG+ +VRFSW T D +E+ WE D
Sbjct: 244 LYGSEITWGSGYPSDPNTKKWLNNAVDPIFGWDQVVRFSWQTAKDAIIKNDGIEIEWEED 303
Query: 234 EMDED 238
+D
Sbjct: 304 NEKDD 308
>gi|328872786|gb|EGG21153.1| ribonuclease H2 subunit A [Dictyostelium fasciculatum]
Length = 303
Score = 191 bits (484), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 111/242 (45%), Positives = 146/242 (60%), Gaps = 14/242 (5%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELF-EDLKVNDS 74
IMGIDEAGRGPVLGP+VYG + P +T+ + F DSK L E++RE+LF + +K D
Sbjct: 44 IMGIDEAGRGPVLGPLVYGACFAPLKEIETIKKMKFNDSKKLTEQQREQLFIKIIKSPDV 103
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
+G+ DI P LS KM K +L+ ISH SA +I VL+ G + E+YLDTVG A K
Sbjct: 104 IGFVSDINTPEYLSEKMCAKMPTSLDVISHGSAFKMIRTVLDRGYNVQELYLDTVGPALK 163
Query: 135 YQAKLSQRFPSI-KFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEE-TAENMHRNF 192
YQ KL FPSI K VVS KADS+YP+VS SIVAKV RD + F + R+F
Sbjct: 164 YQTKLQIAFPSIGKIVVSSKADSIYPIVSAGSIVAKVLRDVLIANTSFAAYQGVEISRDF 223
Query: 193 GSGYPGD---------HKHIIFGFP-SLVRFSWGTCTSHFKDIVEVLWES-DEMDEDVSS 241
GSGYP D H+ +FG+P +++RFSW T ++ + W S D+ S+
Sbjct: 224 GSGYPSDPSTKKWLREHRDNVFGYPDNIIRFSWKTTINNLASESSIHWVSLDKQSHYFST 283
Query: 242 RR 243
+R
Sbjct: 284 KR 285
>gi|156375344|ref|XP_001630041.1| predicted protein [Nematostella vectensis]
gi|156217054|gb|EDO37978.1| predicted protein [Nematostella vectensis]
Length = 569
Score = 191 bits (484), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 97/172 (56%), Positives = 123/172 (71%), Gaps = 3/172 (1%)
Query: 4 EAALPKWASN-PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKR 62
++ +P+ A N PC +GIDEAGRGPVLGPMVYG YCP S + L T FADSKTL EE+R
Sbjct: 17 KSKIPEIARNEPCCVGIDEAGRGPVLGPMVYGICYCPLSKAEELKTTGFADSKTLTEEER 76
Query: 63 EELFEDLKVN--DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGIL 120
E LF++L N +GW +DI+ P LS ML + K +LNE+SH+SAIGLI +L+ G+
Sbjct: 77 EALFKELSENCHGYMGWVIDILTPNFLSNCMLQRTKCSLNEVSHNSAIGLIRLLLDSGVK 136
Query: 121 LTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTR 172
+ EVY+DTVG AEKYQ KL + FP K VV+ KAD+ +PVVS AS+ AK T
Sbjct: 137 VQEVYVDTVGPAEKYQDKLQKIFPEQKIVVTPKADAKFPVVSAASVCAKGTH 188
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 82/169 (48%), Positives = 111/169 (65%), Gaps = 6/169 (3%)
Query: 46 LATLNFADSKTLKEEKREELFEDLKVN--DSVGWAVDIIDPRELSAKMLNKNKINLNEIS 103
L ++ DSKTL EE+RE LF++L N +GW +DI+ P LS ML + K +LNE+S
Sbjct: 319 LVAIDTQDSKTLTEEEREALFKELSENCHGYMGWVIDILTPNFLSNCMLQRTKCSLNEVS 378
Query: 104 HDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSG 163
H+SAIGLI +L+ G+ + EVY+DTVG AEKYQ KL + FP K VV+ KAD+ +PVVS
Sbjct: 379 HNSAIGLIRLLLDSGVKVQEVYVDTVGPAEKYQDKLQKIFPEQKIVVTPKADAKFPVVSA 438
Query: 164 ASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDHK---HIIFGFPS 209
AS+ AKV+RDR + W F E + GSGYP ++ H+ +PS
Sbjct: 439 ASVCAKVSRDRVISAWEFSEDI-IFTKETGSGYPSGYQSGGHLHTEYPS 486
>gi|345568395|gb|EGX51289.1| hypothetical protein AOL_s00054g359 [Arthrobotrys oligospora ATCC
24927]
Length = 353
Score = 190 bits (483), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 105/238 (44%), Positives = 141/238 (59%), Gaps = 17/238 (7%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS-- 74
+G+DEAGRGPVLGPMVYG YC Y+++L+ F DSK L E R +L +++ +D+
Sbjct: 85 LGVDEAGRGPVLGPMVYGIAYCVSDYEKSLSKKGFDDSKKLTAEVRSDLLQEICTSDTEL 144
Query: 75 ---VGWAVDIIDPRELSAKMLNKNKI---NLNEISHDSAIGLITRVLNIGILLTEVYLDT 128
VGWAV ++ R++++ ML + N+N +HD+ + LI VL G+ + E+++DT
Sbjct: 145 HANVGWAVRVMSARDITSGMLRPAGVGTYNINAQAHDTTMNLIDEVLKKGVNVKEIFVDT 204
Query: 129 VGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENM 188
VG A YQAKL +RFP+ K VSKKADSLYP VS AS+ AKVTRD L+ +
Sbjct: 205 VGPAVTYQAKLQRRFPTTKVTVSKKADSLYPSVSVASVCAKVTRDFALKESFSLASGGGE 264
Query: 189 HRNFGSGYPGDHKHI---------IFGFPSLVRFSWGTCTSHFKDIVEVLWESDEMDE 237
N GSGYP D K I +FG+ S RFSW T K EV+ D DE
Sbjct: 265 VPNTGSGYPSDPKSIAYLKGSMDSLFGWGSETRFSWSTAAELLKKDAEVVDWPDNDDE 322
>gi|353241100|emb|CCA72936.1| related to 35 kDa ribonuclease H [Piriformospora indica DSM 11827]
Length = 379
Score = 190 bits (482), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 105/250 (42%), Positives = 145/250 (58%), Gaps = 30/250 (12%)
Query: 11 ASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSY-QQTLATLNFADSKTLKEEKREELFEDL 69
A P +G+DEAGRGP LGP+VYG +CP ++ +LA + F DSKTL E R EL + L
Sbjct: 93 AVGPYAVGVDEAGRGPALGPLVYGMAFCPVAFVDGSLAEMGFDDSKTLTHETRVELLKAL 152
Query: 70 KVNDS-VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLN--IGILLTEVYL 126
+ + +GWAV +I P+ +S+ ML + +NLN S ++ I L+ +L+ + ++EVY+
Sbjct: 153 SEDTTNMGWAVSVISPQAVSSGMLRRPPVNLNTQSQNATIALLQSLLSEPYALDISEVYV 212
Query: 127 DTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEE--- 183
D +G AEKYQA L RF ++K V KADSLY +V AS+ AKVTRD + GW++EE
Sbjct: 213 DALGPAEKYQAYLQSRFRTLKITVRNKADSLYKIVGAASVAAKVTRDYLVEGWVWEEATR 272
Query: 184 TAENMHRN-------------FGSGYPGD---------HKHIIFGFPSLVRFSWGTC-TS 220
T N RN GSGYP D H FGFP++ RFSW T+
Sbjct: 273 TGSNATRNEIDGEATWGKGTELGSGYPSDPNTKAWIAEHLDKTFGFPTIARFSWAPIRTA 332
Query: 221 HFKDIVEVLW 230
+D +V W
Sbjct: 333 IERDGHKVQW 342
>gi|118355616|ref|XP_001011067.1| ribonuclease HII family protein [Tetrahymena thermophila]
gi|89292834|gb|EAR90822.1| ribonuclease HII family protein [Tetrahymena thermophila SB210]
Length = 284
Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 116/264 (43%), Positives = 153/264 (57%), Gaps = 21/264 (7%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELF---EDLKVN 72
+MGIDEAGRGPVLGPMVYGC P Y+ L F DSK L E+KR++L+ E+LK N
Sbjct: 14 VMGIDEAGRGPVLGPMVYGCCVWPIQYEPELKLEGFNDSKQLTEQKRDQLYARMEELK-N 72
Query: 73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
D + + V I+ LS +ML KN+ +LNE+S ++A LI V++ G +T+V+LDTVG
Sbjct: 73 DKLYFEVRILSAEFLSNRMLAKNRDSLNELSFNAAYSLIDSVMSQGFNVTQVFLDTVGKE 132
Query: 133 EKYQAKLSQ----RFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENM 188
E YQAKL Q +P +KF VS KAD+ +PVV ASI AKVTRD + E + +
Sbjct: 133 ETYQAKLYQDYKYTYPQLKFTVSSKADAKFPVVGAASICAKVTRDLQITNNDMREPLD-L 191
Query: 189 HRNFGSGYPGDHK---------HIIFGFPSLVRFSWGTCTSHFKD---IVEVLWESDEMD 236
+ GSGYP D +FGFPS VR+SW T + F + V ESD+ D
Sbjct: 192 SKATGSGYPSDPNTKKWLQEVFDPVFGFPSNVRYSWSTVDNIFNEKKLQVNFFDESDKKD 251
Query: 237 EDVSSRRSGKRQLKLSDIGFSSSK 260
++ S Q K G+ S K
Sbjct: 252 KNQKSLTQMVSQKKSETNGYYSKK 275
>gi|301100786|ref|XP_002899482.1| ribonuclease H2 subunit A, putative [Phytophthora infestans T30-4]
gi|262103790|gb|EEY61842.1| ribonuclease H2 subunit A, putative [Phytophthora infestans T30-4]
Length = 791
Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 100/222 (45%), Positives = 135/222 (60%), Gaps = 15/222 (6%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVND 73
P ++GIDEAGRGPV+GPMVYG Y P + + L F DSK L E R +LFE ++ +
Sbjct: 26 PVMLGIDEAGRGPVMGPMVYGAAYWPVAVNDAMCALGFDDSKALSAESRAQLFEKMQSTE 85
Query: 74 SVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAE 133
+GW V +I E+S KM + NLNE+S D+AI LI V N G ++ +V++DTVGD
Sbjct: 86 GLGWIVRLISAAEISDKM-QRQTSNLNEMSRDAAIQLINEVQNKGAVVKKVFVDTVGDPR 144
Query: 134 KYQAKLSQRFP-SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF 192
YQ+ L++ F +I+F V KKADSL+ VVS ASI AKVTRDR + W++E A + +F
Sbjct: 145 WYQSFLTKHFNGTIEFRVEKKADSLFKVVSAASIAAKVTRDRVISDWMWESPALELPTDF 204
Query: 193 GSGYPGDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWESDE 234
GSGYP D +WGT + V+V W D+
Sbjct: 205 GSGYPSDP-------------NWGTVEPFNEKAVKVEWPHDK 233
>gi|429328791|gb|AFZ80551.1| ribonuclease H1 large subunit, putative [Babesia equi]
Length = 288
Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 112/263 (42%), Positives = 147/263 (55%), Gaps = 22/263 (8%)
Query: 4 EAALPKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTL---ATLNFADSKTLKEE 60
+++LP P +GIDEAGRGPVLG MV+G +CP + + DSK L E
Sbjct: 14 KSSLPS-KETPVALGIDEAGRGPVLGAMVFGGFFCPIGAESEAILKGDIKVDDSKKLNEL 72
Query: 61 KREELFEDLKVND-SVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGI 119
RE F L G D++ P+ +S KML + K NLNE+SHD+ I +I V++ G
Sbjct: 73 AREYKFRQLHDETLPFGLIADVVTPQYISYKMLQRTKYNLNEMSHDTEISIIRHVISAGY 132
Query: 120 LLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW 179
L E+Y+DTVG KY+AKL FP+I V+KKADSL+PVVS ASIVAKV RD ++ W
Sbjct: 133 NLKEIYVDTVGVESKYEAKLKNLFPNIHIKVAKKADSLFPVVSAASIVAKVVRDNIIKCW 192
Query: 180 IFEETAENMHRNFGSGYPGD---------HKHIIFGFPSLVRFSWGTCTSHFKDIVEVL- 229
+ N GSGYPGD + H IFGFP +VRFSW T + D
Sbjct: 193 ----SNSYGTSNIGSGYPGDAYTIRFLSENLHKIFGFPDIVRFSWRTASDMLNDQKRSAI 248
Query: 230 --WESD-EMDEDVSSRRSGKRQL 249
W D E + D S+++ K+ L
Sbjct: 249 FNWYDDLEEENDELSKKTVKKNL 271
>gi|190344386|gb|EDK36053.2| hypothetical protein PGUG_00151 [Meyerozyma guilliermondii ATCC
6260]
Length = 343
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 107/240 (44%), Positives = 150/240 (62%), Gaps = 22/240 (9%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLA-TLNFADSKTLKEEKREELFE-----D 68
++G+DEAGRGPVLGPMVYG YC SYQ+ L FADSK LKE+KR ELF D
Sbjct: 72 VVLGVDEAGRGPVLGPMVYGISYCLESYQEDLKHKYGFADSKVLKEDKRRELFYMVESMD 131
Query: 69 LKVNDSVGWAVDIIDPRELSAKMLN----KNKINLNEISHDSAIGLITRVLNIGILLTEV 124
++N++VGWA + R++S+ ML NLNE +H++ I LI VL+ G+ + +V
Sbjct: 132 HELNENVGWATRTMTARDISSAMLQGRGAAGGANLNEQAHNTTIQLIREVLDSGVNVKKV 191
Query: 125 YLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEET 184
++DTVG YQ KL FP+++ V+KKADS++P+VS AS+VAKVTRD + + ++
Sbjct: 192 FVDTVGPPATYQKKLQGIFPTLEITVTKKADSIFPIVSTASVVAKVTRDLNIH-YYHDQL 250
Query: 185 AENMHRNFGSGYPGD-------HKHI--IFGFPSLVRFSWGTCTSHFKDI--VEVLWESD 233
A + GSGYP D H ++ +FG+ LVRFSW T K+ V V++E+D
Sbjct: 251 ALLQGKVIGSGYPSDPNTSTWLHANVDPVFGWCPLVRFSWQTAKDSLKNHHGVSVVYEAD 310
>gi|403176173|ref|XP_003334882.2| hypothetical protein PGTG_16050 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375172135|gb|EFP90463.2| hypothetical protein PGTG_16050 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 349
Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 102/237 (43%), Positives = 133/237 (56%), Gaps = 28/237 (11%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSY-QQTLATLNFADSKTLKEEKREELFE------- 67
IMGIDEAGRGPVLGPMVYG +C ++ + L L FADSKTL +REEL E
Sbjct: 69 IMGIDEAGRGPVLGPMVYGAAFCTQAFAEDKLLDLGFADSKTLTHRRREELLEMIVHPPA 128
Query: 68 DLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLD 127
D +N+ V W V ++ P ++S M ++ NLN + D+ +I L++ L +Y+D
Sbjct: 129 DQPLNERVEWNVKVLTPADISQGMNRRSPYNLNAQAFDATCEIIQHALDLQYNLQHIYVD 188
Query: 128 TVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAEN 187
T+G + +Q KL Q FP IKF V KADS+YP+V AS+VAKVTRD + WI E+
Sbjct: 189 TLGPPKTHQMKLEQSFPGIKFTVCSKADSIYPIVGAASVVAKVTRDAIVSHWIHPESTHP 248
Query: 188 MHR-----------NFGSGYPGDHKHI---------IFGFPSLVRFSWGTCTSHFKD 224
R + GSGYP D + IFGF LVRFSWGT + D
Sbjct: 249 QKRKSSQEDEDATTSLGSGYPSDPNTVKWLSENFNTIFGFGQLVRFSWGTVKTLLAD 305
>gi|331234733|ref|XP_003330025.1| hypothetical protein PGTG_10935 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309309015|gb|EFP85606.1| hypothetical protein PGTG_10935 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 349
Score = 188 bits (477), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 107/269 (39%), Positives = 144/269 (53%), Gaps = 28/269 (10%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSY-QQTLATLNFADSKTLKEEKREELFE------- 67
IMGIDEAGRGPVLGPMVYG +C ++ + L L FADSKTL +REEL E
Sbjct: 69 IMGIDEAGRGPVLGPMVYGAAFCTQAFAEDKLLDLGFADSKTLTHRRREELLEMIVHPPA 128
Query: 68 DLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLD 127
D +N+ V W V ++ P ++S M ++ NLN + D+ +I L++ L +Y+D
Sbjct: 129 DQPLNERVEWNVKVLTPADISQGMNRRSPYNLNAQAFDATCEIIQHALDLQYNLQHIYVD 188
Query: 128 TVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAEN 187
T+G + +Q KL Q FP IKF V KADS+YP+V AS+VAKVTRD + WI E+
Sbjct: 189 TLGPPKTHQMKLEQSFPGIKFTVCSKADSIYPIVGAASVVAKVTRDAIVSHWIHPESTHP 248
Query: 188 MHR-----------NFGSGYPGDHKHI---------IFGFPSLVRFSWGTCTSHFKDIVE 227
R + GSGYP D + IFGF LVRFSWGT + D
Sbjct: 249 QKRKSSQEDEDATTSLGSGYPSDPNTVKWLSENFNTIFGFGQLVRFSWGTVKTLLADRGP 308
Query: 228 VLWESDEMDEDVSSRRSGKRQLKLSDIGF 256
+DE + + Q + + +GF
Sbjct: 309 AFSWNDEPSIQKWFKPVSQCQAETAPVGF 337
>gi|399218230|emb|CCF75117.1| unnamed protein product [Babesia microti strain RI]
Length = 277
Score = 188 bits (477), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 98/226 (43%), Positives = 138/226 (61%), Gaps = 14/226 (6%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLAT-LNFADSKTLKEEKREELFEDL-KVNDS 74
+GIDEAGRGPVLGP+VYG +C + L + DSK L EE RE F+ L VN
Sbjct: 31 IGIDEAGRGPVLGPLVYGGFFCSNDVENELKMDIKVDDSKKLSEESREAKFKLLTNVNKP 90
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
G+ +I P+ +S ML + K NLN+ISHDSA+ +I V++IG L VY+D VG E
Sbjct: 91 FGFVAQLITPQHISTAMLREQKYNLNQISHDSALNIIRHVISIGYKLKSVYIDAVGPTEA 150
Query: 135 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGS 194
Y+ K+ FP++K +++++ADS YP+VS ASI+AKV RDRT++ W E+++ FG
Sbjct: 151 YKMKVKANFPNLKVIIAERADSTYPLVSAASIIAKVLRDRTVKAW---ESSDKYKLPFGC 207
Query: 195 GYPGD---HKHI------IFGFPSLVRFSWGTCTSHFKDIVEVLWE 231
GYP D +++ IFGFP +R SW T + + V W+
Sbjct: 208 GYPSDPLTKEYLKKSFDKIFGFPPHIRSSWATADAFLSKSLPVDWK 253
>gi|71024097|ref|XP_762278.1| hypothetical protein UM06131.1 [Ustilago maydis 521]
gi|46101780|gb|EAK87013.1| hypothetical protein UM06131.1 [Ustilago maydis 521]
Length = 551
Score = 187 bits (476), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 89/174 (51%), Positives = 116/174 (66%), Gaps = 4/174 (2%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL-KVN 72
PC++G+DEAGRGPVLGP+VYG YCP SYQ L + FADSK L E+R+ L L N
Sbjct: 88 PCVLGVDEAGRGPVLGPLVYGIAYCPVSYQDDLKQIGFADSKALTAERRDSLLSALIDQN 147
Query: 73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
+GWAV ++ P+++SA ML + INLN S + + LI VL G+ LTE+Y+DTVGD
Sbjct: 148 SHLGWAVRVMSPQDISAGMLRRRPINLNAQSSQATVSLIAGVLESGVDLTEIYVDTVGDP 207
Query: 133 EKYQAKLSQRFP---SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEE 183
+ Y LS FP IK+ V+ KAD++YP+V ASI AKVTRDR + W + E
Sbjct: 208 KSYSKLLSSYFPRHSHIKWTVTSKADAIYPIVGAASIAAKVTRDRCVDAWRYAE 261
>gi|156082533|ref|XP_001608751.1| ribonuclease H [Babesia bovis T2Bo]
gi|154796000|gb|EDO05183.1| ribonuclease H, putative [Babesia bovis]
Length = 264
Score = 187 bits (475), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 114/249 (45%), Positives = 144/249 (57%), Gaps = 22/249 (8%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCS--YQQTLA-TLNFADSKTLKEEKREELFEDLKVND 73
+GIDEAGRGPVLGPMVYG CP Y++ L + DSK L R+ F L +
Sbjct: 5 LGIDEAGRGPVLGPMVYGSFVCPIGDEYRRMLKDNIGVDDSKKLTASLRDSKFRALNGPE 64
Query: 74 S-VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
+ ++I PR +S KML + NLN ISHDSAI LI ++ G +TEVY+D VG A
Sbjct: 65 TPFAMCAEVITPRYISYKMLQREAYNLNNISHDSAIALIRYYISQGFNITEVYVDAVGPA 124
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF 192
KY+A L+Q FP IK VV+ KADS++PVVS ASIVAKV RD + W F+++ E + +
Sbjct: 125 AKYEAMLTQLFPKIKCVVANKADSIFPVVSAASIVAKVIRDNIIDSW-FKDSPERV--DV 181
Query: 193 GSGYPGD---------HKHIIFGFPSLVRFSWGTCTSHFKD---IVEVLWESDEMDEDVS 240
GSGYPGD H +FGF S VR SW T S D V W + +E+ S
Sbjct: 182 GSGYPGDPVTKQFLSSHLDRLFGFSSFVRVSWSTAKSILDDETRAVPFEWYDPDSEEEES 241
Query: 241 SRRSGKRQL 249
R RQL
Sbjct: 242 DR---ARQL 247
>gi|363753492|ref|XP_003646962.1| hypothetical protein Ecym_5390 [Eremothecium cymbalariae
DBVPG#7215]
gi|356890598|gb|AET40145.1| hypothetical protein Ecym_5390 [Eremothecium cymbalariae
DBVPG#7215]
Length = 306
Score = 187 bits (475), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 108/239 (45%), Positives = 143/239 (59%), Gaps = 24/239 (10%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLA-TLNFADSKTLKEEKREELFEDLKVND- 73
I+G+DEAGRGPVLGPMVYG YC SYQ ++ + F DSK L + R LFE + D
Sbjct: 37 ILGVDEAGRGPVLGPMVYGVAYCTKSYQDSVVKSYGFDDSKKLTDPIRRRLFEKIYNGDI 96
Query: 74 -SVGWAVDIIDPRELSAKMLN---KNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 129
+G+A I P ++S ML + NLNE +HD IGLI +VL+ G+ ++ +Y+DTV
Sbjct: 97 DGIGYATTSITPFDISTGMLRYPPEQNYNLNEQAHDVTIGLIQKVLDAGVNISHIYVDTV 156
Query: 130 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH 189
G YQ KL +RFP KF V+KKADSLYPVVS AS++AKVTRD L E+
Sbjct: 157 GPPITYQDKLEKRFPVCKFTVAKKADSLYPVVSVASVIAKVTRDVWL-----EQLRTIPD 211
Query: 190 RNFGSGYPGDHKHI---------IFGF-PSLVRFSWGTCTSHFK---DIVEVLWESDEM 235
GSGYPGD K + +FG+ P +VRFSW TC + + + + WE + +
Sbjct: 212 EILGSGYPGDPKTVKWLNENIRPLFGWNPEIVRFSWQTCQNILETNPHAINIEWEEESL 270
>gi|294890217|ref|XP_002773106.1| ribonuclease hi large subunit, putative [Perkinsus marinus ATCC
50983]
gi|239878004|gb|EER04922.1| ribonuclease hi large subunit, putative [Perkinsus marinus ATCC
50983]
Length = 350
Score = 187 bits (474), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 123/296 (41%), Positives = 160/296 (54%), Gaps = 37/296 (12%)
Query: 8 PKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFE 67
P A+ +GIDEAGRGPV GPMVYG L + F DSK L E KR ELFE
Sbjct: 46 PDDAARYYQLGIDEAGRGPVFGPMVYGAAISDIRKSDALGKMGFNDSKQLTEAKRSELFE 105
Query: 68 D-----LKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLT 122
LK + +G+AV ++ E+S KML +NK+NLN ISH++AIGLI L+ GI +
Sbjct: 106 GIHNEALKDDGVLGFAVHVLTAHEISTKMLRRNKVNLNRISHETAIGLIEHALSEGINVK 165
Query: 123 EVYLDTVGDAEKYQAKLSQRFPSI---KFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW 179
EVY+DTVGD E+YQ KLS F VV KKAD++YP+ S ASI AKV RDR +
Sbjct: 166 EVYVDTVGDPERYQNKLSSIFKRRGVDTIVVCKKADAIYPICSAASICAKVIRDRLVEEE 225
Query: 180 IFE----ETAENMHRN--FGSGYPGDHKHI---------IFGFPSLVRFSWGTCTS-HFK 223
I E + R+ GSGYPGD + + +F FP +RFSW T K
Sbjct: 226 ISYYPEGEGVATLCRSVKVGSGYPGDAQTVEWLEKVVDPVFLFPRQIRFSWSTIEEIEKK 285
Query: 224 DIVEVLWESDEM----------DEDVSSRRSGKRQLKLSDIGFSSSKRRSEEIESS 269
+E W DE D + S RR+ + L+ F+++KR +I +S
Sbjct: 286 RALEFDWHDDEYLEGNDENRPGDNNSSGRRASQPSLQSM---FNAAKRARRKIFTS 338
>gi|146421659|ref|XP_001486774.1| hypothetical protein PGUG_00151 [Meyerozyma guilliermondii ATCC
6260]
Length = 343
Score = 187 bits (474), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 106/240 (44%), Positives = 150/240 (62%), Gaps = 22/240 (9%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLA-TLNFADSKTLKEEKREELFE-----D 68
++G+DEAGRGPVLGPMVYG YC SYQ+ L FADSK LKE+KR ELF D
Sbjct: 72 VVLGVDEAGRGPVLGPMVYGISYCLESYQEDLKHKYGFADSKVLKEDKRRELFYMVELMD 131
Query: 69 LKVNDSVGWAVDIIDPRELSAKMLN----KNKINLNEISHDSAIGLITRVLNIGILLTEV 124
++N++VGWA + R++S+ ML NLNE +H++ I LI VL++G+ + +V
Sbjct: 132 HELNENVGWATRTMTARDISSAMLQGRGAAGGANLNEQAHNTTIQLIREVLDLGVNVKKV 191
Query: 125 YLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEET 184
++DTVG YQ KL FP+++ V+KKADS++P+VS AS+VAKVTRD + + ++
Sbjct: 192 FVDTVGPPATYQKKLQGIFPTLEITVTKKADSIFPIVSTASVVAKVTRDLNIH-YYHDQL 250
Query: 185 AENMHRNFGSGYPGD-------HKHI--IFGFPSLVRFSWGTCTSHFKDI--VEVLWESD 233
A + GSGYP D H ++ +FG+ LVRF W T K+ V V++E+D
Sbjct: 251 ALLQGKVIGSGYPSDPNTSTWLHANVDPVFGWCPLVRFLWQTAKDSLKNHHGVSVVYEAD 310
>gi|296233041|ref|XP_002761859.1| PREDICTED: ribonuclease H2 subunit A [Callithrix jacchus]
Length = 278
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 102/236 (43%), Positives = 134/236 (56%), Gaps = 34/236 (14%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVND 73
PC++G+DEAGRGPVLGPMVY YCP S L L ADSKTL E +RE L ++ +
Sbjct: 28 PCVVGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLSESERERLLGKMQEDG 87
Query: 74 S-VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
+ VGWA+D++ P +S ML + L +V V++DTVG
Sbjct: 88 NFVGWALDVLSPNLISTSMLGR-------------FSLSRKV---------VFVDTVGMP 125
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF 192
E YQ +L Q FP I+ V KAD+LYPVVS ASI AKV RD+ ++ W F E +++ ++
Sbjct: 126 ETYQKRLQQSFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKNWQFVEKLQDLDTDY 185
Query: 193 GSGYPGD---------HKHIIFGFPSLVRFSWGTCTSHF-KDIVEVLWESDEMDED 238
GSGYP D H +FGFP VRFSW T + K+ +V+WE D ED
Sbjct: 186 GSGYPNDPKTKVWLKEHVEPVFGFPQFVRFSWRTAQTILEKEAKDVIWE-DSAPED 240
>gi|403374437|gb|EJY87169.1| Ribonuclease [Oxytricha trifallax]
Length = 373
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 111/277 (40%), Positives = 155/277 (55%), Gaps = 19/277 (6%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTL-ATLNFADSKTLKEEKREELFEDLKVN 72
PC +GIDEAGRGPVLGPMVYGC + P S + F DSK L E++REE+FE +K
Sbjct: 86 PCEIGIDEAGRGPVLGPMVYGCTFWPISQRDEFKKQYKFTDSKQLNEQQREEMFEQIKSC 145
Query: 73 D--SVGWAVDIIDPRELSAKMLNKNKI---NLNEISHDSAIGLITRVLNIGILLTEVYLD 127
+ +G+ ++ LS ML + K NLN ISHD+AI LI +V +G+ + V LD
Sbjct: 146 EFSRLGYFTAVLHADYLSNLMLAEMKSGGKNLNTISHDTAIDLIKKVKALGVNVKRVVLD 205
Query: 128 TVGDAEKYQAKLSQRFPS--IKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETA 185
TVG Y+ L R ++ +V KAD +PVVS ASI AKVTRD+ L W F E
Sbjct: 206 TVGQPHSYKQLLHNRLKDDELEIIVESKADLNHPVVSAASICAKVTRDQVLADWQFPED- 264
Query: 186 ENMHRNFGSGYPGDHK---------HIIFGFPSLVRFSWGTCTSHFKD-IVEVLWESDEM 235
+ + ++G GYPGD K +FGFP+LVRFSW TC++ +D V + W D
Sbjct: 265 KKIDTDYGCGYPGDPKAKEWLKRNLDPVFGFPTLVRFSWKTCSTILEDNQVNINWRDDID 324
Query: 236 DEDVSSRRSGKRQLKLSDIGFSSSKRRSEEIESSGKG 272
++D ++ K +G K ++++ + K
Sbjct: 325 EKDKKQQKLNYGAKKEDVVGLPKYKTKTQKERYNNKA 361
>gi|448119560|ref|XP_004203761.1| Piso0_000780 [Millerozyma farinosa CBS 7064]
gi|359384629|emb|CCE78164.1| Piso0_000780 [Millerozyma farinosa CBS 7064]
Length = 368
Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 109/261 (41%), Positives = 153/261 (58%), Gaps = 24/261 (9%)
Query: 5 AALPKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREE 64
+A+ P ++G+DEAGRGPVLGPMVYG Y YQ L F+DSKTLKE R +
Sbjct: 80 SAIASQPDEPLVLGVDEAGRGPVLGPMVYGIAYTLEKYQPELKKFGFSDSKTLKEGVRTD 139
Query: 65 LF-----EDLKVNDSVGWAVDIIDPRELSAKML----NKNKINLNEISHDSAIGLITRVL 115
L E+ +++++VGWA I +++S+ ML K NLN+ +HD+ I LI +++
Sbjct: 140 LLQKIEDEEHELHNNVGWATTQISAKDISSGMLRSSLGKGAYNLNDQAHDTTIELIQQII 199
Query: 116 NIGILLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRT 175
N + + ++++DTVG YQAKL +RFP I+ V+KKADSL+PVVS ASIVAKVTRD+
Sbjct: 200 NRKLNIAKIFVDTVGPPASYQAKLQKRFPGIEVTVTKKADSLFPVVSTASIVAKVTRDKV 259
Query: 176 LRGWIFEETAENMHR-NFGSGYPGDHK---------HIIFG-FPSLVRFSWGTCTSHF-- 222
L + + A + +FGSGYP D +FG F LVRFSW T
Sbjct: 260 LHYYC--DIAPLLQSASFGSGYPSDPNTSRWLNSSVDTVFGWFFGLVRFSWQTAKDALVK 317
Query: 223 KDIVEVLWESDEMDEDVSSRR 243
V++E++ + ED R
Sbjct: 318 NGACSVIYEAECVKEDTGYRN 338
>gi|221481429|gb|EEE19819.1| ribonuclease HI large subunit, putative [Toxoplasma gondii GT1]
gi|221501972|gb|EEE27722.1| ribonuclease HI large subunit, putative [Toxoplasma gondii VEG]
Length = 366
Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 97/173 (56%), Positives = 119/173 (68%), Gaps = 2/173 (1%)
Query: 9 KWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCS-YQQTLATLNFADSKTLKEEKREELFE 67
K P +GIDEAGRG VLG MVY C +C ++ L LN DSK LKE +REE FE
Sbjct: 16 KCGGKPVRLGIDEAGRGCVLGAMVYACFFCAAEDEKKELKALNVDDSKKLKEWEREEAFE 75
Query: 68 DLKVN-DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYL 126
++ D GW++ I E+SAKML K K +LNEISHD+AI LI R + G+ +TEV++
Sbjct: 76 AIQAKRDLFGWSIHAIRSEEISAKMLRKKKYSLNEISHDTAISLILRTVKSGVNVTEVFV 135
Query: 127 DTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW 179
DTVG+A YQAKL FPSIK V++KADSL+PVVS ASI+AKVTRDR L W
Sbjct: 136 DTVGNANAYQAKLKAHFPSIKIKVAEKADSLFPVVSAASILAKVTRDRMLVRW 188
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 55/107 (51%), Gaps = 16/107 (14%)
Query: 192 FGSGYPGDHKHI---------IFGFPSLVRFSWGTCTSHF-KDIVEVLWESDEMDEDVSS 241
FGSGYPGD + I +FGF VRFSW T F K V V W DE+D++ S
Sbjct: 264 FGSGYPGDSETIAFLNRNCDPVFGFDGFVRFSWSTARLIFEKRGVPVDW-YDEVDDEAGS 322
Query: 242 RRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 288
S +Q ++++ F ++KR E + G R F KL+ L++
Sbjct: 323 GASEAKQSRITN--FFAAKR---EATAGGIERPAFFLRSKLQLLSNL 364
>gi|134114978|ref|XP_773787.1| hypothetical protein CNBH2390 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50256415|gb|EAL19140.1| hypothetical protein CNBH2390 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 326
Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 110/285 (38%), Positives = 149/285 (52%), Gaps = 42/285 (14%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
IMGIDEAGRGPVLGPMVY YCP S++ L ++ F DSK L E R+ L+E V+ +
Sbjct: 38 IMGIDEAGRGPVLGPMVYAAAYCPLSFKPILESIGFDDSKALSAETRQTLWESFDVHPPL 97
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEV----------- 124
++ + P+++S+ ML K INLN + D+ +GLI LN GI +TE
Sbjct: 98 CYSSSTLSPQDISSNMLRKVPINLNRQAEDATVGLIQAALNRGINVTEASFSCSLAASCW 157
Query: 125 -------YLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLR 177
Y+D +G A ++QA+L+ FP+IKF V KADSL+ +V ASIVAKVTRDR +
Sbjct: 158 LTICLKCYVDALGPAPQWQARLTAIFPTIKFTVCPKADSLFKIVGAASIVAKVTRDRYVH 217
Query: 178 GWIFEETAENMHRNF----------GSGYPGDHK---------HIIFGFPSLVRFSWGTC 218
GW+ E + + GSGYP D K +FG+ +VRFSW T
Sbjct: 218 GWVDPEDVIHSATHIKSQDEEEVIRGSGYPSDPKTQAYLKGSIDPVFGYKGIVRFSWATV 277
Query: 219 TSHF-KDIVEVLWESDEMDEDV----SSRRSGKRQLKLSDIGFSS 258
K VE W D ++ +R D+G SS
Sbjct: 278 KVLLDKQGVESKWIDDTTQRSAANWFAADADNERPKVWRDLGISS 322
>gi|237844165|ref|XP_002371380.1| ribonuclease HI large subunit, putative [Toxoplasma gondii ME49]
gi|211969044|gb|EEB04240.1| ribonuclease HI large subunit, putative [Toxoplasma gondii ME49]
Length = 366
Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 97/173 (56%), Positives = 119/173 (68%), Gaps = 2/173 (1%)
Query: 9 KWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCS-YQQTLATLNFADSKTLKEEKREELFE 67
K P +GIDEAGRG VLG MVY C +C ++ L LN DSK LKE +REE FE
Sbjct: 16 KCGGKPVRLGIDEAGRGCVLGAMVYACFFCAAEDEKKELKALNVDDSKKLKEWEREEAFE 75
Query: 68 DLKVN-DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYL 126
++ D GW++ I E+SAKML K K +LNEISHD+AI LI R + G+ +TEV++
Sbjct: 76 AIQAKRDLFGWSIHAIRSEEISAKMLRKKKYSLNEISHDTAISLILRTVKSGVNVTEVFV 135
Query: 127 DTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW 179
DTVG+A YQAKL FPSIK V++KADSL+PVVS ASI+AKVTRDR L W
Sbjct: 136 DTVGNANAYQAKLKAHFPSIKIKVAEKADSLFPVVSAASILAKVTRDRMLVRW 188
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 55/107 (51%), Gaps = 16/107 (14%)
Query: 192 FGSGYPGDHKHI---------IFGFPSLVRFSWGTCTSHF-KDIVEVLWESDEMDEDVSS 241
FGSGYPGD + I +FGF VRFSW T F K V V W DE+D++ S
Sbjct: 264 FGSGYPGDSETIAFLNRNCDPVFGFDGFVRFSWSTARLIFEKRGVPVDW-YDEVDDEAGS 322
Query: 242 RRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 288
S +Q ++++ F ++KR E + G R F KL+ L++
Sbjct: 323 GASEAKQSRITN--FFAAKR---EATAGGIERPAFFLRSKLQLLSNL 364
>gi|328849346|gb|EGF98528.1| hypothetical protein MELLADRAFT_46031 [Melampsora larici-populina
98AG31]
Length = 279
Score = 184 bits (467), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 95/244 (38%), Positives = 135/244 (55%), Gaps = 27/244 (11%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL-KVNDSV 75
MGIDEAGRGPVLGPMVY +CP + + L +L FADSKTL +KR LFE + + + +
Sbjct: 1 MGIDEAGRGPVLGPMVYAASFCPVDFSEELKSLGFADSKTLTHQKRCNLFESIVQSSGKI 60
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
W V ++ P ++S M ++ NLN + D+ + +I L+ +L +Y+DT+G + +
Sbjct: 61 QWNVKVMSPSDISMGMSRRSPYNLNAQAFDATVQIIQAALDHQYILQHIYVDTLGPPKTH 120
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF--- 192
Q L + FP++ F V KADS+YP+VS ASIVAKVTRD + W+F E + +
Sbjct: 121 QLNLQKAFPNLHFTVCSKADSIYPIVSAASIVAKVTRDAIVENWMFVELSIGKRKRLEES 180
Query: 193 -------------GSGYPGD---------HKHIIFGFPSLVRFSWGTCTSHFKDI-VEVL 229
GSGYP D H +FG+P L RFSW T + D +V
Sbjct: 181 QDDDDDSIWNLPTGSGYPADPNTTAWLKSHFDKVFGYPQLARFSWATVKTLLADRGAQVT 240
Query: 230 WESD 233
W +
Sbjct: 241 WNDE 244
>gi|354545252|emb|CCE41979.1| hypothetical protein CPAR2_805280 [Candida parapsilosis]
Length = 381
Score = 184 bits (466), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 109/258 (42%), Positives = 148/258 (57%), Gaps = 42/258 (16%)
Query: 12 SNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLA-TLNFADSKTLKEEKREELFEDLK 70
+ P ++GIDEA RGPVLGPMVYG Y + L T FADSK L ++KR++LF+ ++
Sbjct: 101 TKPVVIGIDEARRGPVLGPMVYGLAYSLKDFSSKLQKTYGFADSKQLTDDKRQQLFQMIE 160
Query: 71 ------VNDSVGWAVDIIDPRELSAKMLNK----NKINLNEISHDSAIGLITRVLNIGIL 120
+N +GWA + +++S+ ML NLNE +HD+ I LI +V+N GI
Sbjct: 161 DADQHELNKHIGWATTTMTAKDISSGMLRSVHGIGAYNLNEQAHDATINLIKQVINQGIN 220
Query: 121 LTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 180
+TE+Y+DTVG YQAKL + FP+I VSKKADS+YP+VS AS+VAKVTRD +R +
Sbjct: 221 VTEIYVDTVGPPVSYQAKLKKLFPTIDITVSKKADSVYPIVSTASVVAKVTRDLNIRHY- 279
Query: 181 FEETAENMH------RNFGSGYPGDH------KHII-------FGFPSLVRFSWGTCTSH 221
N H + GSGYP D H + FGF +RFSW T
Sbjct: 280 ------NTHLPILQGQKLGSGYPSDPNTSYWLNHNVDPVFGWCFGF---IRFSWQTAKDA 330
Query: 222 F--KDIVEVLWESDEMDE 237
D VEV+++ D + E
Sbjct: 331 LMKHDAVEVIYQDDCVKE 348
>gi|402591687|gb|EJW85616.1| ribonuclease HII [Wuchereria bancrofti]
Length = 304
Score = 183 bits (464), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 96/220 (43%), Positives = 132/220 (60%), Gaps = 13/220 (5%)
Query: 11 ASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLK 70
+S PC +GIDEAGRGPVLGPMVY C + + L + DSK L E KREE+FE +K
Sbjct: 26 SSMPCTIGIDEAGRGPVLGPMVYACAVTLVNNENMLTRMGIDDSKVLTEAKREEIFERMK 85
Query: 71 ---VNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLD 127
+++ G+A I + +SA ML + K +LN++SHD A L+ + I + EVY+D
Sbjct: 86 GSNMSEVFGYACRSISAQMISAAMLRRTKYSLNKLSHDCATELLKLAVENNINVVEVYVD 145
Query: 128 TVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAEN 187
TVG YQA L ++FP ++ +VS+KAD+ +P+VS ASI+AKV RDR LR W F E N
Sbjct: 146 TVGPKGPYQAMLHKKFPDMQIIVSEKADAKFPIVSAASIIAKVKRDRALRNWTFPEGIVN 205
Query: 188 MHRNF----------GSGYPGDHKHIIFGFPSLVRFSWGT 217
+ + D +FG+P+LVRFSW T
Sbjct: 206 VLPGGYGSGYPGDPNTKNFLLDAVDQVFGYPNLVRFSWKT 245
>gi|405122261|gb|AFR97028.1| ribonuclease HI large subunit [Cryptococcus neoformans var. grubii
H99]
Length = 326
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 109/285 (38%), Positives = 148/285 (51%), Gaps = 42/285 (14%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
IMGIDEAGRGPVLGPMVY YCP S++ L ++ F DSK L E R+ L++ V+ +
Sbjct: 38 IMGIDEAGRGPVLGPMVYAAAYCPLSFKSILESIGFDDSKALSAETRQTLWKSFDVHPPL 97
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEV----------- 124
++ + P+++S+ ML K INLN + D+ + LI LN GI +TE
Sbjct: 98 CYSSSTLSPQDISSNMLRKVPINLNRQAEDATVDLIQTALNRGINVTEASFSCSLEASCW 157
Query: 125 -------YLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLR 177
Y+D +G A ++QA+L+ FP+IKF V KADSL+ +V ASIVAKVTRDR +
Sbjct: 158 LTISLKCYVDALGPAPQWQARLTAIFPTIKFTVCPKADSLFKIVGAASIVAKVTRDRYVH 217
Query: 178 GWIFEETAENMHRNF----------GSGYPGDHK---------HIIFGFPSLVRFSWGTC 218
GW+ E + + GSGYP D K +FG+ +VRFSW T
Sbjct: 218 GWVDPEDVVHGATDIKSQDEEEVIRGSGYPSDPKTQAYLKESIDPVFGYKGIVRFSWATV 277
Query: 219 TSHF-KDIVEVLWESDEMDEDV----SSRRSGKRQLKLSDIGFSS 258
K VE W D S+ +R D+G SS
Sbjct: 278 KVLLDKQGVESKWIDDTTQRSAANWFSADADNERPKVWRDLGVSS 322
>gi|302683973|ref|XP_003031667.1| hypothetical protein SCHCODRAFT_55770 [Schizophyllum commune H4-8]
gi|300105360|gb|EFI96764.1| hypothetical protein SCHCODRAFT_55770 [Schizophyllum commune H4-8]
Length = 286
Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 100/217 (46%), Positives = 126/217 (58%), Gaps = 17/217 (7%)
Query: 11 ASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL- 69
AS I+G+DEAGRGPVLGP+VYG Y + ++ + + FADSKTL +RE L E L
Sbjct: 26 ASGKYILGVDEAGRGPVLGPLVYGVAYVAETGKERMEAMGFADSKTLDAARREALLETLC 85
Query: 70 KVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 129
D +GWAV +I P+ LS+ ML + NLNE S D+ + LI VL GI L+ V++D +
Sbjct: 86 SAPDVLGWAVRVISPQALSSGMLRRPPTNLNEQSRDATVMLIRGVLARGIQLSAVFVDAL 145
Query: 130 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH 189
G Y+ LSQRFP IKF V+ KADS + +V AS+ AKVTRD + A
Sbjct: 146 GPTVAYEQWLSQRFPEIKFTVANKADSKFKIVGAASVAAKVTRDALI-------DASRFP 198
Query: 190 RNFGSGYPGDHK---------HIIFGFPSLVRFSWGT 217
GSGYP D K FGFP VRFSW T
Sbjct: 199 AERGSGYPSDPKTKAWLAAAVEPTFGFPRAVRFSWAT 235
>gi|344299617|gb|EGW29970.1| hypothetical protein SPAPADRAFT_63592 [Spathaspora passalidarum
NRRL Y-27907]
Length = 355
Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 106/236 (44%), Positives = 142/236 (60%), Gaps = 22/236 (9%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELF---EDL--KV 71
+G+DEAGRGPVLGPMVYG YC YQ L FADSK LK+EKR+ LF EDL ++
Sbjct: 82 LGVDEAGRGPVLGPMVYGIAYCLKEYQPKLKEYGFADSKVLKDEKRQSLFKQMEDLSHEL 141
Query: 72 NDSVGWAVDIIDPRELSAKMLNKNK----INLNEISHDSAIGLITRVLNIGILLTEVYLD 127
++VGWA + +++S+ ML NLNE +HD+ I LI +VL G+ +TEV++D
Sbjct: 142 YENVGWATTTMTAKDISSGMLQSTAGTGAYNLNEQAHDTTIELIKQVLAKGVNVTEVFVD 201
Query: 128 TVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAEN 187
TVG YQ KL FP I VV+KKADS+YP+VS AS+VAKVTRD ++ + E
Sbjct: 202 TVGPPITYQNKLKSLFPGIDIVVTKKADSIYPIVSTASVVAKVTRDLNIQ-YYNESLPIL 260
Query: 188 MHRNFGSGYPGD---------HKHIIFGFP-SLVRFSWGTCTSHF--KDIVEVLWE 231
+ GSGYP D + +FG+ +R+SW T + VEV++E
Sbjct: 261 QNHALGSGYPSDPNTSKWLNSNVDPVFGWCFGFIRYSWQTAKDSLVKNNAVEVIYE 316
>gi|260946247|ref|XP_002617421.1| hypothetical protein CLUG_02865 [Clavispora lusitaniae ATCC 42720]
gi|238849275|gb|EEQ38739.1| hypothetical protein CLUG_02865 [Clavispora lusitaniae ATCC 42720]
Length = 345
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 109/235 (46%), Positives = 143/235 (60%), Gaps = 27/235 (11%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLAT-LNFADSKTLKEEKREELF-----E 67
P ++G+DEAGRGPVLGPMVYG YC YQ L FADSKTLK+ R+ELF E
Sbjct: 71 PVVLGVDEAGRGPVLGPMVYGISYCLRDYQDHLKKKYGFADSKTLKDSTRQELFQLIDNE 130
Query: 68 DLKVNDSVGWAVDIIDPRELSAKML----NKNKINLNEISHDSAIGLITRVLNIGILLTE 123
+++ +VGWA + +++S ML NLNE +HD+ I LI VL G+ + E
Sbjct: 131 KHELHKNVGWATCTMTAKDISNGMLRSALGAGSYNLNEQAHDTTIQLIKDVLLSGVNVRE 190
Query: 124 VYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEE 183
+++DTVG YQAKL + FPSI V+KKADS+YP+VS AS+VAKVTRD L+ W + E
Sbjct: 191 IFVDTVGPPVSYQAKLKKHFPSIDITVTKKADSIYPIVSTASVVAKVTRDLNLQ-W-YNE 248
Query: 184 TAENM-HRNFGSGYPGD---------HKHIIFGFP-SLVRFSWGTCTSHFKDIVE 227
EN+ + GSGYP D + +FG+ L+RFSW T KD +E
Sbjct: 249 NVENLIGKCLGSGYPSDPNTSKWLTSNVDKVFGWDFGLIRFSWQTA----KDALE 299
>gi|388857401|emb|CCF49075.1| related to 35 kDa ribonuclease H [Ustilago hordei]
Length = 548
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 85/179 (47%), Positives = 119/179 (66%), Gaps = 4/179 (2%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVND 73
PC++G+DEAGRGPVLGP+VYG YCP SYQ + + FADSK L E+R+ L L +
Sbjct: 80 PCVLGVDEAGRGPVLGPLVYGIAYCPISYQDDMKQIGFADSKALTAERRDNLLSALVDHK 139
Query: 74 S-VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
+GW+V ++ P+++SA ML + INLN S + + LI VL G+ +TE+Y+DTVGD
Sbjct: 140 QYLGWSVRVMSPQDISAGMLRRRPINLNAQSSQATVLLIAGVLEEGVDVTEIYVDTVGDP 199
Query: 133 EKYQAKLSQRF---PSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENM 188
Y+ LS F P IK+ V+ KAD++YP+V ASI AKVTRDR + W + E +++
Sbjct: 200 NSYKKLLSSHFPRHPHIKWTVTSKADAIYPIVGAASIAAKVTRDRCIEAWKYAEQQQSL 258
>gi|406695841|gb|EKC99140.1| hypothetical protein A1Q2_06544 [Trichosporon asahii var. asahii
CBS 8904]
Length = 300
Score = 181 bits (459), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 104/246 (42%), Positives = 144/246 (58%), Gaps = 35/246 (14%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
IMGIDEAGRGPVLGPMVY C +CP S++ TL L F + R+ L+E V+ +
Sbjct: 39 IMGIDEAGRGPVLGPMVYACAFCPMSFKPTLEGLGF--------DVRQSLWEAFDVHPEL 90
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
++ + P+ +SA ML K INLN+ + D+ +GLI L+ GI + E ++D +G ++ +
Sbjct: 91 CYSSSTLAPQAISAAMLRKVPINLNQQAQDATMGLIRAALDRGINVQECFVDALGPSQVW 150
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI------------FEE 183
Q KLS FP+IKF+V KADSL+ +V ASIVAKVTRDR + GW+ +E
Sbjct: 151 QDKLSAEFPTIKFLVCPKADSLFKIVGAASIVAKVTRDRYIEGWVDAEGPMPGSAGAGDE 210
Query: 184 TAENMHRNFGSGYPGDHK---------HIIFGFPSLVRFSWGTCTSHFKDIVEVLWESDE 234
AE + R GSGYP D K +FG+ +VRFSW T K ++E S +
Sbjct: 211 EAEELIR--GSGYPSDPKTQAFLRQQLDPVFGYRGMVRFSWATV----KVLLEKQGHSCQ 264
Query: 235 MDEDVS 240
+DVS
Sbjct: 265 WADDVS 270
>gi|150864655|ref|XP_001383577.2| hypothetical protein PICST_31007 [Scheffersomyces stipitis CBS
6054]
gi|149385911|gb|ABN65548.2| predicted protein [Scheffersomyces stipitis CBS 6054]
Length = 347
Score = 181 bits (458), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 106/247 (42%), Positives = 145/247 (58%), Gaps = 23/247 (9%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLAT-LNFADSKTLKEEKREELF-----E 67
P ++G+DEAGRGPVLGPMVYG + Y L FADSKTLKEEKR+ELF E
Sbjct: 70 PVVLGVDEAGRGPVLGPMVYGIAFALEKYSTRLQKEYGFADSKTLKEEKRDELFYSIEDE 129
Query: 68 DLKVNDSVGWAVDIIDPRELSAKMLNK----NKINLNEISHDSAIGLITRVLNIGILLTE 123
++N +VGWA + R++S+ ML NLNE +HD+ I LI V+ G+ + +
Sbjct: 130 ANELNRNVGWATTTMTARDISSGMLRSVLGIGNYNLNEQAHDTTIQLIKEVIAKGVNVKK 189
Query: 124 VYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEE 183
+Y+DTVG YQAKL + FP + V+KKADS+YP+VS AS++AKVTRD +R +
Sbjct: 190 IYVDTVGPPVTYQAKLQKIFPETEVTVAKKADSIYPIVSTASVMAKVTRDANIRWYNHNL 249
Query: 184 TAENMHRNFGSGYPGD---------HKHIIFGF-PSLVRFSWGTCTSHF--KDIVEVLWE 231
H+ GSGYP D + +FG+ +RFSW T D VEV++E
Sbjct: 250 DVLKGHK-LGSGYPSDPNTSKWLNGNVDKVFGWCYGFIRFSWQTAKDSLVKHDGVEVIYE 308
Query: 232 SDEMDED 238
+ + +D
Sbjct: 309 DECVKQD 315
>gi|384483740|gb|EIE75920.1| ribonuclease HII [Rhizopus delemar RA 99-880]
Length = 212
Score = 181 bits (458), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 94/212 (44%), Positives = 127/212 (59%), Gaps = 12/212 (5%)
Query: 31 MVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVN-DSVGWAVDIIDPRELSA 89
MVY YCP S Q L L F DSK L EEKR++L + ++ N D +GWAV +I PR++S
Sbjct: 1 MVYAVSYCPLSRHQELRDLGFDDSKKLTEEKRDQLAKLIETNKDWIGWAVYVISPRDIST 60
Query: 90 KMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQAKLSQRFPSIKFV 149
ML + NLNE++HD+ I LI V+ + L E+Y+D VG + Y+ KLS FP I
Sbjct: 61 NMLRRPVYNLNEMAHDATIKLIKEVVEKKLNLEEIYVDPVGPSASYKKKLSSFFPGIAIT 120
Query: 150 VSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETA--ENMHRNFGSGYPGDHKHI---- 203
V KAD+LYP+VS ASI AKVTRD+ ++ W++ E + + FGSGYP D I
Sbjct: 121 VEPKADALYPIVSAASICAKVTRDQYVQNWVWTEPGFEGTVSKQFGSGYPSDPNTIKWMD 180
Query: 204 -----IFGFPSLVRFSWGTCTSHFKDIVEVLW 230
FGFPS++RFSW T ++ + W
Sbjct: 181 KNEDDFFGFPSIMRFSWKTISNRMNLTRNIEW 212
>gi|393241381|gb|EJD48903.1| ribonuclease H-like protein [Auricularia delicata TFB-10046 SS5]
Length = 318
Score = 181 bits (458), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 104/262 (39%), Positives = 139/262 (53%), Gaps = 31/262 (11%)
Query: 11 ASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLK 70
++ P +G+DEAGRGPV+GP+VYG +CP Y + L L F DSK L E R L L
Sbjct: 31 SAGPYHLGVDEAGRGPVMGPLVYGVAFCPAPYIEKLNELGFDDSKALSAETRTHLLGSLC 90
Query: 71 VNDS-VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 129
+ + +GWAV ++ P+ +S ML + INLN S ++ I LI VL GI L+ VY+D +
Sbjct: 91 GDPANLGWAVRVVSPQAISRGMLRRPPINLNIQSQEATILLIREVLAKGIQLSHVYVDAL 150
Query: 130 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH 189
G ++ YQ LS FP I F V KAD+ + +V AS+ AKVTRD + WIF+E ++++
Sbjct: 151 GSSKTYQDYLSSVFPGIAFDVRPKADATFKIVGAASVAAKVTRDAWIENWIFDELSKHVP 210
Query: 190 RNF--------------------GSGYPGDHK---------HIIFGFPSLVRFSWGTCTS 220
+ GSGYP D K FGFPS+VRFSW T
Sbjct: 211 GDVDADEKDIAAPMAPAWATAETGSGYPSDPKTQGWLRNSLEPTFGFPSVVRFSWATAKV 270
Query: 221 HF-KDIVEVLWESDEMDEDVSS 241
KD V W D V S
Sbjct: 271 ALEKDGHAVKWTDDNQSSLVKS 292
>gi|167524000|ref|XP_001746336.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163775098|gb|EDQ88723.1| predicted protein [Monosiga brevicollis MX1]
Length = 596
Score = 180 bits (457), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 106/250 (42%), Positives = 135/250 (54%), Gaps = 46/250 (18%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVN- 72
PC++G+DEAGRGPVLGPMVY + P S + L FADSK L E KR+ELF+ +K N
Sbjct: 299 PCVLGVDEAGRGPVLGPMVYAVAFAPLSENARMKKLGFADSKQLSEAKRDELFKVIKENA 358
Query: 73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTE--------- 123
D +GW V ++ ++SA ML++ K NLN +H+S + L+ R+ G+ + E
Sbjct: 359 DWMGWKVHMLAASDISAGMLSRTKHNLNAQAHESTVDLVKRLHAQGVQIKEDLTYRLRLN 418
Query: 124 ---VYLDTVGDAEKYQAKLSQ----RFPSIKFVVSKK-------------------ADSL 157
+Y+DTVG A YQ +L P+IK VV K AD
Sbjct: 419 HRQLYVDTVGKAHIYQQQLENWLRPTIPNIKIVVESKLCVTHRVSDLCVLILDIANADVT 478
Query: 158 YPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDHK---------HIIFGFP 208
YP+VS ASI AKVTRD L W E E + +FG GYPGD IFGFP
Sbjct: 479 YPIVSAASICAKVTRDAVLTYWRHPEQRE-IDNDFGCGYPGDSSTKAWLRKVLDPIFGFP 537
Query: 209 SLVRFSWGTC 218
SLVRFSW T
Sbjct: 538 SLVRFSWSTA 547
>gi|408388455|gb|EKJ68139.1| hypothetical protein FPSE_11606 [Fusarium pseudograminearum CS3096]
Length = 338
Score = 180 bits (457), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 100/238 (42%), Positives = 139/238 (58%), Gaps = 26/238 (10%)
Query: 11 ASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTL--ATLNFADSKTLKEEKREELFED 68
++ PC +G+DEAGRGPVLGPMVYG ++ P S +L T +F DSK LK R +L
Sbjct: 56 SATPCCLGVDEAGRGPVLGPMVYGVVFLPISLSDSLLRETHHFDDSKVLKPAVRSDLMRT 115
Query: 69 L-----KVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTE 123
L + +S GWA + R++ A M N NLN + D+ + LI V G+ + E
Sbjct: 116 LCTPGSDLYESCGWATASLSARDIGANMYRPNAYNLNAQAMDATVDLIKAVYAAGVNVQE 175
Query: 124 VYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEE 183
+++DT+G YQAKL + FP++K +V+KKADSLYP VS AS+ AKVTRD L +FE
Sbjct: 176 IFVDTIGQPAAYQAKLQRIFPTVKIIVAKKADSLYPCVSAASVCAKVTRDAALE-VLFEA 234
Query: 184 TAENMHRN-----FGSGYPGD---------HKHIIFGFPSLVRFSWGTCTSHFKDIVE 227
A++ + +GSGYP D + H +FG+ RFSWGT KD++E
Sbjct: 235 RADDEEKGGEAMAWGSGYPSDGNCVSWMKNNMHPVFGWGPECRFSWGTA----KDMLE 288
>gi|213404976|ref|XP_002173260.1| ribonuclease H2 subunit A [Schizosaccharomyces japonicus yFS275]
gi|212001307|gb|EEB06967.1| ribonuclease H2 subunit A [Schizosaccharomyces japonicus yFS275]
Length = 321
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 106/247 (42%), Positives = 145/247 (58%), Gaps = 29/247 (11%)
Query: 12 SNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL-- 69
+ P ++G+DEAGRGPVLGPMVY +CP + L+ FADSK L EKR +L + +
Sbjct: 57 TQPFVLGVDEAGRGPVLGPMVYAVAFCPTELK--LSEYGFADSKQLTAEKRTQLLQAVCD 114
Query: 70 ---KVNDSVGWAVDIIDPRELSAKMLNK-NKINLNEISHDSAIGLITRVLNIGILLTEVY 125
+ S+GWA ++ R++S ML + +K NLN +HDS I LI VL G ++E+Y
Sbjct: 115 RNNPASTSIGWATTVMTARDISRGMLRRVDKYNLNAQAHDSTIALIQSVLKAGYNISEIY 174
Query: 126 LDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETA 185
+DTVG YQAKL RFP K V+KKADSL+P+VS ASI AKVTRD L E T
Sbjct: 175 VDTVGPPAVYQAKLQNRFPQAKVTVTKKADSLFPIVSLASICAKVTRDAHL-----ERTR 229
Query: 186 ENMH-RNFGSGYPGDHK---------HIIFGFPS-LVRFSWGTCTSHFK----DIVEVLW 230
E + N+G GY D + H +FG+ +VR+SW T + + +V++ W
Sbjct: 230 EALDIDNWGCGYSSDSQTTAWLRKNVHPVFGWKGHVVRYSWQTAKNLLEIGKNGMVDMDW 289
Query: 231 ESDEMDE 237
DE D+
Sbjct: 290 H-DEQDK 295
>gi|449017231|dbj|BAM80633.1| probable ribonuclease HI large subunit [Cyanidioschyzon merolae
strain 10D]
Length = 328
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 104/235 (44%), Positives = 142/235 (60%), Gaps = 16/235 (6%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVN-DS 74
IMGIDEAGRGPVLGP+VY C C Q L DSK L + RE +F+ L N D
Sbjct: 9 IMGIDEAGRGPVLGPLVYACCACQAGRLQELEATGVRDSKKLSAQCRERIFQTLGENADW 68
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
+ I+ P LSA ML + ++NLNE S+ + I L+ L+ G+ + +++DTVG+ +
Sbjct: 69 IYSRTRILSPEMLSATMLGRKRVNLNETSYAATISLVKDALSSGMFIEGLFVDTVGEPDA 128
Query: 135 YQAKLSQRFPSI-KFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAEN----MH 189
YQ +L + FP I + VV +A+S + VV+ ASI+AKVTRD+ LR W F E A +
Sbjct: 129 YQMRLKRIFPKIPRIVVQSEAESRFAVVAAASIIAKVTRDKALRTWTFPEEANDPQLRFS 188
Query: 190 RNFGSGYPGD-------HKHI--IFGFPSLVRFSWGTCTSHF-KDIVEVLWESDE 234
R +GSGYP D KH+ IFGFPS+VRFSW TC+ K+ V+V W ++
Sbjct: 189 REYGSGYPADPLTQRWLRKHLDPIFGFPSIVRFSWSTCSRILEKECVQVDWPEED 243
>gi|448537761|ref|XP_003871401.1| Rnh35 ribonuclease H2 catalytic subunit [Candida orthopsilosis Co
90-125]
gi|380355758|emb|CCG25276.1| Rnh35 ribonuclease H2 catalytic subunit [Candida orthopsilosis]
Length = 375
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 105/252 (41%), Positives = 144/252 (57%), Gaps = 30/252 (11%)
Query: 12 SNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLA-TLNFADSKTLKEEKREELF---- 66
+ P ++GIDEAGRGPVLGPMVYG Y + L T FADSK L ++KR++LF
Sbjct: 94 TKPVVIGIDEAGRGPVLGPMVYGLAYSLKEFSGKLQKTYGFADSKQLTDDKRQQLFQMIE 153
Query: 67 --EDLKVNDSVGWAVDIIDPRELSAKMLNK----NKINLNEISHDSAIGLITRVLNIGIL 120
E ++N +GWA + +++S+ ML NLNE +HD+ I LI V+ G+
Sbjct: 154 DVEQHELNKHIGWATTTMTAKDISSGMLRSVHGIGAYNLNEQAHDATINLIKSVIEQGVN 213
Query: 121 LTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 180
+TE+Y+DTVG YQAKL + FP+I V+KKADS+YP+VS AS+VAKVTRD +R +
Sbjct: 214 VTEIYVDTVGPPISYQAKLKKHFPTIDITVAKKADSIYPIVSTASVVAKVTRDLNIRHYN 273
Query: 181 FEETAENMHRNFGSGYPGDH------KHII-------FGFPSLVRFSWGTCTSHF--KDI 225
H+ GSGYP D H + FGF +RFSW T
Sbjct: 274 THLPLLQDHK-LGSGYPSDPNTSYWLNHNVDPVFGWCFGF---IRFSWQTAKDALIRHGA 329
Query: 226 VEVLWESDEMDE 237
V+V+++ D + E
Sbjct: 330 VDVIYQDDCVKE 341
>gi|46107902|ref|XP_381010.1| hypothetical protein FG00834.1 [Gibberella zeae PH-1]
Length = 338
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 102/251 (40%), Positives = 141/251 (56%), Gaps = 25/251 (9%)
Query: 11 ASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTL--ATLNFADSKTLKEEKREELFED 68
++ PC +G+DEAGRGPVLGPMVYG + P S +L T +F DSK LK R +L
Sbjct: 56 SATPCCLGVDEAGRGPVLGPMVYGVFFLPISLSDSLLRETHHFDDSKVLKPAVRSDLMRI 115
Query: 69 L-----KVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTE 123
L + +S GWA + R++ A M N NLN + D+ + LI V G+ + E
Sbjct: 116 LCTPGSDLYESCGWATASLSARDIGANMYRPNAYNLNAQAMDATVDLIKAVYAAGVNVQE 175
Query: 124 VYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEE 183
+++DT+G YQAKL + FP++K +V+KKADSLYP VS AS+ AKVTRD L +FE
Sbjct: 176 IFVDTIGQPAAYQAKLQRIFPTVKIIVAKKADSLYPCVSAASVCAKVTRDAALE-VLFEA 234
Query: 184 TAENMHRN-----FGSGYPGD---------HKHIIFGFPSLVRFSWGTCTSHFK---DIV 226
A+ + +GSGYP D + H +FG+ RFSWGT + + V
Sbjct: 235 RADGEEKGGEAMAWGSGYPSDGNCVSWMKNNMHPVFGWGPECRFSWGTAKDMLEGKGNGV 294
Query: 227 EVLWESDEMDE 237
+V W D+ E
Sbjct: 295 KVEWPLDDDGE 305
>gi|19114596|ref|NP_593684.1| ribonuclease H2 complex subunit Rnh201 (predicted)
[Schizosaccharomyces pombe 972h-]
gi|1723422|sp|Q10236.1|RNH2A_SCHPO RecName: Full=Ribonuclease H2 subunit A; Short=RNase H2 subunit A;
AltName: Full=Ribonuclease HI large subunit; Short=RNase
HI large subunit; AltName: Full=Ribonuclease HI subunit
A
gi|1204203|emb|CAA93552.1| ribonuclease H2 complex subunit Rnh201 (predicted)
[Schizosaccharomyces pombe]
Length = 326
Score = 177 bits (449), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 111/247 (44%), Positives = 140/247 (56%), Gaps = 32/247 (12%)
Query: 12 SNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL-- 69
S P +G+DEAGRGPVLGPMVY YCP + L FADSKTL KREEL + +
Sbjct: 61 SQPYRLGVDEAGRGPVLGPMVYAVAYCPVDFD--LTNYGFADSKTLASLKREELLKLICN 118
Query: 70 ---KVNDSVGWAVDIIDPRELSAKMLN-KNKINLNEISHDSAIGLITRVLNIGILLTEVY 125
++ +VGW+ I REL+A ML +NK NLN +HD+ I LI +V GI +TE+Y
Sbjct: 119 KSNELGKNVGWSTMSISARELAAGMLRYRNKYNLNLQAHDTTIDLIKKVYESGINVTEIY 178
Query: 126 LDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETA 185
+DTVG YQ KL FP K V+KKADSL+P+VS ASI AKVTRD L E A
Sbjct: 179 VDTVGPPISYQEKLQAHFPQAKVTVTKKADSLFPIVSLASICAKVTRDIQL------ECA 232
Query: 186 ENMHR--NFGSGYPGDHKHI---------IFGFP-SLVRFSWGTC------TSHFKDIVE 227
R N+GSGY D + IFG+ +VR+SW T S + +E
Sbjct: 233 RESIRTENWGSGYSSDARTTEWLKVNVDKIFGWKGDIVRYSWKTAKDLLELPSKSQSSIE 292
Query: 228 VLWESDE 234
+ W D+
Sbjct: 293 IDWHEDD 299
>gi|397640214|gb|EJK73996.1| hypothetical protein THAOC_04357 [Thalassiosira oceanica]
Length = 391
Score = 177 bits (449), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 98/229 (42%), Positives = 130/229 (56%), Gaps = 19/229 (8%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
++GIDEAGRGPVLGPM YGC + S + +F DSK L EKR LF+ ++ + ++
Sbjct: 93 VLGIDEAGRGPVLGPMTYGCAFWHPSSSDIPS--DFNDSKQLSAEKRASLFQTIRTSKNI 150
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
G+ + ++ E+S ML ++ NLN +SHD+A+ +I VLN G+ + Y+DTVG E Y
Sbjct: 151 GFVLRVLHASEISRNMLRRSPYNLNAMSHDAAMEMIRAVLNAGVRIDTAYVDTVGIPEAY 210
Query: 136 QAKLSQRFP--SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRN-- 191
Q KL + F +I FVV KKAD+ Y S AS+VAK RDR GW F E A
Sbjct: 211 QRKLERAFEGHNINFVVEKKADAKYAPCSAASVVAKEARDRMTSGWKFTEAAFGYKPQGG 270
Query: 192 --FGSGYPGDHK-----------HIIFGFPSLVRFSWGTCTSHFKDIVE 227
GSGYP D K FGFP VRFSWG + K++ E
Sbjct: 271 FEVGSGYPSDPKCKAWMGRNCNVDSPFGFPDFVRFSWGPAKNALKEVDE 319
>gi|255710295|gb|ACU30967.1| ribonuclease HI [Ochlerotatus triseriatus]
Length = 235
Score = 177 bits (448), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 89/174 (51%), Positives = 115/174 (66%), Gaps = 13/174 (7%)
Query: 57 LKEEKREELFEDLKVND----SVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLIT 112
L EEKR+ +F+++ D S+GWAV++I P ++ ML + K +LNE+S DSAIGLI
Sbjct: 2 LTEEKRDVIFDEMNQKDYATESIGWAVEVISPNDICMSMLRRTKRSLNEVSMDSAIGLIN 61
Query: 113 RVLNIGILLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTR 172
+ ++ G+ + EVY+DTVG EKYQAKL Q FP K V+KKADS YP+VS ASI AKV+R
Sbjct: 62 KAIDAGVNIAEVYVDTVGPPEKYQAKLKQLFPKFKITVAKKADSTYPIVSAASICAKVSR 121
Query: 173 DRTLRGWIFEETAENMHRNFGSGYPGDHK--------HIIFGFPSLVRFSWGTC 218
D L+ W F E E NFGSGYPGD ++FG+P LVRFSW T
Sbjct: 122 DHALKVWTFREGLEE-GINFGSGYPGDPTTKNFLGTYELVFGYPRLVRFSWSTA 174
>gi|401884266|gb|EJT48435.1| hypothetical protein A1Q1_02567 [Trichosporon asahii var. asahii
CBS 2479]
Length = 301
Score = 176 bits (447), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 104/247 (42%), Positives = 144/247 (58%), Gaps = 36/247 (14%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
IMGIDEAGRGPVLGPMVY C +CP S++ TL L F + R+ L+E V+ +
Sbjct: 39 IMGIDEAGRGPVLGPMVYACAFCPMSFKPTLEGLGF--------DVRQSLWEAFDVHPEL 90
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTE-VYLDTVGDAEK 134
++ + P+ +SA ML K INLN+ + D+ +GLI L+ GI + E ++D +G ++
Sbjct: 91 CYSSSTLAPQAISAAMLRKVPINLNQQAQDATMGLIRAALDRGINVQEQCFVDALGPSQV 150
Query: 135 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI------------FE 182
+Q KLS FP+IKF+V KADSL+ +V ASIVAKVTRDR + GW+ +
Sbjct: 151 WQDKLSAEFPTIKFLVCPKADSLFKIVGAASIVAKVTRDRYIEGWVDAEGPMPGSAGAGD 210
Query: 183 ETAENMHRNFGSGYPGDHK---------HIIFGFPSLVRFSWGTCTSHFKDIVEVLWESD 233
E AE + R GSGYP D K +FG+ +VRFSW T K ++E S
Sbjct: 211 EEAEELIR--GSGYPSDPKTQAFLRQQLDPVFGYRGMVRFSWATV----KVLLEKQGHSC 264
Query: 234 EMDEDVS 240
+ +DVS
Sbjct: 265 QWADDVS 271
>gi|254576869|ref|XP_002494421.1| ZYRO0A01100p [Zygosaccharomyces rouxii]
gi|238937310|emb|CAR25488.1| ZYRO0A01100p [Zygosaccharomyces rouxii]
Length = 309
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 112/253 (44%), Positives = 143/253 (56%), Gaps = 26/253 (10%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLN--FADSKTLKEEKREELFEDLKVND 73
I+G+DEAGRGPVLGPMVYG YC +Q + N F DSK L + +R LF + +
Sbjct: 43 ILGVDEAGRGPVLGPMVYGISYCTKQFQDEILKPNYGFDDSKKLSDLERRRLFSKIYGEN 102
Query: 74 -------SVGWAVDIIDPRELSAKML----NKNKINLNEISHDSAIGLITRVLNIGILLT 122
+VG+AV I P ++S+ ML N N NLNE +HD I LI VL G+ L
Sbjct: 103 GEVAEIANVGYAVTAITPADISSGMLRYPANAN-YNLNEQAHDVTIALIEGVLQRGVKLH 161
Query: 123 EVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFE 182
VY+DTVG YQ KL Q+FP IKF V+KKADSLY VVS ASIVAKVTRD L W +
Sbjct: 162 HVYVDTVGPPASYQKKLEQKFPHIKFTVAKKADSLYCVVSVASIVAKVTRDILLEQWA-Q 220
Query: 183 ETAENMHRNFGSGYPGDHKHI---------IFGF-PSLVRFSWGTCTSHFKDI-VEVLWE 231
+ + GSGYP D K + G+ P LVRFSW T + + +++ WE
Sbjct: 221 QVSPPEAGPLGSGYPADAKTTAWLRNTMKPLMGWDPHLVRFSWQTSETLLDNKGIQIEWE 280
Query: 232 SDEMDEDVSSRRS 244
+ V + +S
Sbjct: 281 EKSKSKPVWAGKS 293
>gi|378734851|gb|EHY61310.1| ribonuclease H2 subunit A [Exophiala dermatitidis NIH/UT8656]
Length = 340
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 104/261 (39%), Positives = 148/261 (56%), Gaps = 36/261 (13%)
Query: 11 ASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTL--ATLNFADSKTLKEEKREELFED 68
+ PC++G+DEAGRGPV+GPMVYG Y P QQ+L +F DSK L R L +
Sbjct: 50 SGTPCVLGVDEAGRGPVIGPMVYGVYYLPVELQQSLLATAYHFDDSKVLTPAFRANLMKA 109
Query: 69 LKVND-----SVGWAVDIIDPRELSAKML-NKNKINLNEISHDSAIGLITRVLNIGILLT 122
+ + S GWA+ + +++ A ML N NLN + D+ + LI VL+ G+ +T
Sbjct: 110 VCTAETDLFKSSGWAIKSLSAQDIGAGMLKNGGCYNLNAQAMDATVELIRGVLDRGVNVT 169
Query: 123 EVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRT----LRG 178
E+Y+DT+G E YQ +LSQ FP+IK V KKADSL+P VS AS+VAKVTRD + L
Sbjct: 170 EIYVDTIGKPEVYQRRLSQIFPTIKITVEKKADSLFPCVSAASVVAKVTRDVSCEALLEA 229
Query: 179 WIFEE---TAENMHRNFGSGYPGDHKHI---------IFGFPSLVRFSWGTCTSHFKDIV 226
++ + ++E +GSGYP D + + ++GF + RFSWGT KD++
Sbjct: 230 YVQQNPSSSSEEEPVTWGSGYPSDARCVSWLKSAIDPVWGFGNECRFSWGT----VKDML 285
Query: 227 E--------VLWESDEMDEDV 239
E W D DE++
Sbjct: 286 EQKGGPATRTDWPDDTADENM 306
>gi|358378191|gb|EHK15873.1| hypothetical protein TRIVIDRAFT_39184 [Trichoderma virens Gv29-8]
Length = 335
Score = 174 bits (442), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 102/262 (38%), Positives = 140/262 (53%), Gaps = 39/262 (14%)
Query: 11 ASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTL--ATLNFADSKTLKEEKREELFED 68
++ PC++G+DEAGRGPVLGPMVYG + P L T +F DSK L R +L E
Sbjct: 45 SAPPCVLGVDEAGRGPVLGPMVYGIFFLPADISDPLLRETHHFDDSKVLSATVRSQLMET 104
Query: 69 L-----KVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTE 123
L +++S GWA + R++ A M+ NLN + D+ + LI V G+ + E
Sbjct: 105 LCTPGSDLHESCGWATTALSARDIGANMMKPVSYNLNAQAMDATMDLIRAVYAKGVNIKE 164
Query: 124 VYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIF-- 181
+Y+DT+G YQAKL + FP+ K V+KKADSLY VS AS+ AKVTRD L
Sbjct: 165 IYVDTIGPPATYQAKLQRVFPTAKVTVAKKADSLYACVSAASVCAKVTRDAALETLFHAR 224
Query: 182 ----------EETAENMHRNFGSGYPGDHK---------HIIFGFPSLVRFSWGTCTSHF 222
E +E++ +GSGYP D K H +FG+ S RFSWGT
Sbjct: 225 QVATAATNGEEAPSEDIPMEWGSGYPSDSKTVGWLRNNMHPLFGWGSECRFSWGTA---- 280
Query: 223 KDIVE-------VLWESDEMDE 237
KD++E + W +D+ E
Sbjct: 281 KDMLESKGNGIKIEWPADDDGE 302
>gi|407917906|gb|EKG11206.1| Ribonuclease HII/HIII [Macrophomina phaseolina MS6]
Length = 332
Score = 174 bits (441), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 113/292 (38%), Positives = 160/292 (54%), Gaps = 31/292 (10%)
Query: 5 AALPKWASN----PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTL--ATLNFADSKTLK 58
+A+P+ +N C++G+DEAGRGPVLGPMVY LY P S ++L T +F DSK L
Sbjct: 41 SAIPEAIANDITTECVLGVDEAGRGPVLGPMVYALLYLPLSAHRSLLAETHHFDDSKVLT 100
Query: 59 EEKREELFEDL-----KVNDSVGWAVDIIDPRELSAKMLNKN-KINLNEISHDSAIGLIT 112
R +L E L + S GWA ++ ++SA ML N NLN + D+ I LI
Sbjct: 101 PAVRSDLMEKLCTPGTDLYKSCGWATKVMSALDISAGMLKANGTYNLNAQAMDATIELIK 160
Query: 113 RVLNIGILLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTR 172
RV +G+ + E+Y+DT+G YQ KL + FP+++ V+KKADSLYP VS AS+ AKVTR
Sbjct: 161 RVFAMGVNVKEIYIDTIGSPAVYQKKLERIFPTVQITVAKKADSLYPCVSAASVCAKVTR 220
Query: 173 DRTLRGWIFEETAEN-----MHRNFGSGYPGDHK---------HIIFGFPSLVRFSWGTC 218
D L +E A + +GSGYP D + +FG+ RFSWGT
Sbjct: 221 DAALDV-CYETYASSDGETVAADGWGSGYPSDARCSGWLKRNMDPLFGWGPECRFSWGTA 279
Query: 219 TSHFKDI---VEVLWESDEMD-EDVSSRRSGKRQLKLSDIGFSSSKRRSEEI 266
+D ++V W D+ D ++S+ SG + ++ KR SEE+
Sbjct: 280 KDMLEDKKTGLKVEWPVDDEDGMNISAYFSGGQDDGGDELSNWFGKRVSEEV 331
>gi|392578857|gb|EIW71984.1| hypothetical protein TREMEDRAFT_26073 [Tremella mesenterica DSM
1558]
Length = 272
Score = 174 bits (441), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 92/219 (42%), Positives = 133/219 (60%), Gaps = 18/219 (8%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
IMGIDEAGRG + GPMVY CP ++ TL + F DSK L E R+ L++ + + +
Sbjct: 34 IMGIDEAGRGHI-GPMVYAAALCPIKFKSTLEEMGFDDSKALSPETRQNLWDKFEDHPEL 92
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
++ + P+ +SA ML + +NLN + D+ +GL+ L+ GI +TE Y+D +G A ++
Sbjct: 93 CYSSATLSPQAISANMLRRIPVNLNRQAEDATVGLVQAALDRGIKVTECYVDALGPAPQW 152
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETA---ENMHRN- 191
QA+LS FP+I F V KADSL+ +VS ASI+AKVTRDR + W+ ET+ E++ N
Sbjct: 153 QARLSSLFPTISFTVCPKADSLFKIVSAASIIAKVTRDRYIENWLDWETSKSHESLSFNQ 212
Query: 192 ----FGSGYPGDHK---------HIIFGFPSLVRFSWGT 217
+GSGYP D + +FG+ VRFSW T
Sbjct: 213 NGFSWGSGYPSDPRTQAFLKENLDPVFGYTGAVRFSWAT 251
>gi|219111921|ref|XP_002177712.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217410597|gb|EEC50526.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 393
Score = 174 bits (441), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 92/236 (38%), Positives = 134/236 (56%), Gaps = 15/236 (6%)
Query: 16 IMGIDEAGRGPVLGPMVYGC-LYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVND- 73
++GIDEAGRG +LGPMVYG + PC + +F DSK L E+KR L + +
Sbjct: 113 VVGIDEAGRGSILGPMVYGAAFWNPCDEDRI--PNDFNDSKQLSEDKRAMLLHKIMYDTP 170
Query: 74 SVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAE 133
+G+AV ++ E+S ML NLN++SHD+A G+I +L G+ + ++DTVG+A+
Sbjct: 171 EMGFAVRVLHASEISRNMLRTESYNLNQMSHDAAAGIIEHLLEAGVQIGACFIDTVGNAD 230
Query: 134 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG 193
Y+ +L Q FP I F V KAD+ YP S S+VAK RDR + + + E + FG
Sbjct: 231 HYKRRLQQEFPGIDFTVESKADAKYPPCSAGSVVAKNVRDRMMESFQYSEMSLKRDPKFG 290
Query: 194 SGYPGD----------HKHIIFGFPSLVRFSWGTCTSHF-KDIVEVLWESDEMDED 238
SGYP D +FG+P +VRFSW ++ VL+++D +DED
Sbjct: 291 SGYPSDPVCKDWMENNQNCKVFGYPDVVRFSWNPAKKALERNAASVLFQADIIDED 346
>gi|444320573|ref|XP_004180943.1| hypothetical protein TBLA_0E03700 [Tetrapisispora blattae CBS 6284]
gi|387513986|emb|CCH61424.1| hypothetical protein TBLA_0E03700 [Tetrapisispora blattae CBS 6284]
Length = 312
Score = 174 bits (441), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 110/258 (42%), Positives = 151/258 (58%), Gaps = 34/258 (13%)
Query: 4 EAALPKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLN--FADSKTLKEEK 61
++ + K ++P I+G+DEAGRGPVLGPMVYG YC +Y N F DSK L +
Sbjct: 28 DSIVSKKDTSPIILGVDEAGRGPVLGPMVYGIAYCTTNYMNEFIIPNYEFDDSKKLTDTI 87
Query: 62 REELFEDLKVND--------SVGWAVDIIDPRELSAKML----NKNKINLNEISHDSAIG 109
R++LF + ND +G+A I P ++S+ ML +KN NLNE +HD I
Sbjct: 88 RKKLFSKMYSNDPSIDPEINQIGYATTAITPNDISSGMLRFPPSKN-YNLNEQAHDVTIA 146
Query: 110 LITRVLNIGILLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAK 169
LI VL+ + L+ VY+DTVG + YQ KL RFP++KF V+KKADSLY +VS AS+VAK
Sbjct: 147 LIQGVLDQNVQLSHVYVDTVGPPQSYQKKLETRFPNVKFTVTKKADSLYCIVSVASVVAK 206
Query: 170 VTRDRTLRGWIFEETAENMHRNFGSGYPGD---------HKHIIFGFP-SLVRFSWGTCT 219
VTRD ++ + N + N GSGYP D + +FG+P +VRFSW TC
Sbjct: 207 VTRD-----FLIDSMKRNPNENIGSGYPSDPNTKRWLRESQTKLFGWPCDMVRFSWQTCD 261
Query: 220 SHFKD----IVEVLWESD 233
+ D +++ WE D
Sbjct: 262 TLLTDSNTKSIQIDWEED 279
>gi|68469222|ref|XP_721398.1| likely Ribonuclease HII [Candida albicans SC5314]
gi|68470247|ref|XP_720885.1| likely Ribonuclease HII [Candida albicans SC5314]
gi|77022682|ref|XP_888785.1| hypothetical protein CaO19_6562 [Candida albicans SC5314]
gi|46442777|gb|EAL02064.1| likely Ribonuclease HII [Candida albicans SC5314]
gi|46443315|gb|EAL02598.1| likely Ribonuclease HII [Candida albicans SC5314]
gi|76573598|dbj|BAE44682.1| hypothetical protein [Candida albicans]
Length = 431
Score = 174 bits (440), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 101/243 (41%), Positives = 143/243 (58%), Gaps = 25/243 (10%)
Query: 12 SNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLAT-LNFADSKTLKEEKREELFE--- 67
+ P ++G+DEAGRGPVLGPMVYG Y S+ L FADSK L + KREELF+
Sbjct: 151 TEPIVLGVDEAGRGPVLGPMVYGIAYSLESFSSKLQKEYGFADSKVLTDVKREELFKQIE 210
Query: 68 --DLKVNDSVGWAVDIIDPRELSAKMLN----KNKINLNEISHDSAIGLITRVLNIGILL 121
D +++ +GWA + R++S+ ML K NLNE +HD+ I LI +VL G+ +
Sbjct: 211 DPDHELHKHIGWATTTMTARDISSGMLQSVNGKGAYNLNEQAHDTTINLIKQVLAKGVKI 270
Query: 122 TEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIF 181
+++++DTVG YQAKL + FP I V+KKADS+YP+VS AS+VAKVTRD ++ +
Sbjct: 271 SKIFVDTVGPPVTYQAKLKRFFPEIDVTVTKKADSIYPIVSTASVVAKVTRDTNIK--FY 328
Query: 182 EETAENMH-RNFGSGYPGD---------HKHIIFGF-PSLVRFSWGTCTSHF--KDIVEV 228
E + + GSGYP D + +FG+ +RFSW T + EV
Sbjct: 329 NENLPLLQGQKLGSGYPSDPNTSKWLNSNVDPVFGWCYGFIRFSWQTAKDSLVKNNAAEV 388
Query: 229 LWE 231
++E
Sbjct: 389 VYE 391
>gi|238883322|gb|EEQ46960.1| ribonuclease HI large subunit [Candida albicans WO-1]
Length = 427
Score = 174 bits (440), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 101/243 (41%), Positives = 143/243 (58%), Gaps = 25/243 (10%)
Query: 12 SNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLAT-LNFADSKTLKEEKREELFE--- 67
+ P ++G+DEAGRGPVLGPMVYG Y S+ L FADSK L + KREELF+
Sbjct: 148 TEPIVLGVDEAGRGPVLGPMVYGIAYSLESFSSKLQKEYGFADSKVLTDVKREELFKQIE 207
Query: 68 --DLKVNDSVGWAVDIIDPRELSAKMLN----KNKINLNEISHDSAIGLITRVLNIGILL 121
D +++ +GWA + R++S+ ML K NLNE +HD+ I LI +VL G+ +
Sbjct: 208 DPDHELHKHIGWATTTMTARDISSGMLQSVNGKGAYNLNEQAHDTTINLIKQVLAKGVKI 267
Query: 122 TEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIF 181
+++++DTVG YQAKL + FP I V+KKADS+YP+VS AS+VAKVTRD ++ +
Sbjct: 268 SKIFVDTVGPPVTYQAKLKRFFPEIDVTVTKKADSIYPIVSTASVVAKVTRDTNIK--FY 325
Query: 182 EETAENMH-RNFGSGYPGD---------HKHIIFGF-PSLVRFSWGTCTSHF--KDIVEV 228
E + + GSGYP D + +FG+ +RFSW T + EV
Sbjct: 326 NENLPLLQGQKLGSGYPSDPNTSKWLNSNVDPVFGWCYGFIRFSWQTAKDSLVKNNAAEV 385
Query: 229 LWE 231
++E
Sbjct: 386 VYE 388
>gi|325189407|emb|CCA23898.1| ribonuclease H2 subunit A putative [Albugo laibachii Nc14]
Length = 303
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 106/276 (38%), Positives = 142/276 (51%), Gaps = 15/276 (5%)
Query: 13 NPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVN 72
NP IMGIDEAGRGPVLGPMVY Y + + F DSK L R+ L++ + +
Sbjct: 21 NPVIMGIDEAGRGPVLGPMVYSAAYWAIDSNEACEAMGFDDSKVLSAASRKSLYKTITES 80
Query: 73 DSVG---WAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 129
+G W + E+S KM K + NLNEI+ D+ I +I V + L VY+DT+
Sbjct: 81 TEIGSISWIARSVSACEISDKMQRKVR-NLNEIARDATIQIIEIVQAKRVCLQCVYVDTI 139
Query: 130 GDAEKYQAKLSQRF-PSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENM 188
GD YQ L++ F I FVV KKAD L+ +VS ASIVAKV RD L W +E +
Sbjct: 140 GDPSWYQNFLTKHFREKITFVVRKKADQLFKIVSAASIVAKVIRDTILEEWKWETLTHTL 199
Query: 189 HRNFGSGYPGD---------HKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWE-SDEMDED 238
FGSGYP D ++ IF +P++VRFSW T + + +V W D ++
Sbjct: 200 PTEFGSGYPSDPSTKAWLLQYRDPIFAYPNIVRFSWSTIENLLQATPKVAWAFDDSTPKN 259
Query: 239 VSSRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRC 274
S R S S S K+R I + + C
Sbjct: 260 ESVRASITSFFPPSKSASSVGKKRKRSIILTSRKLC 295
>gi|212538023|ref|XP_002149167.1| ribonuclease HI large subunit [Talaromyces marneffei ATCC 18224]
gi|210068909|gb|EEA23000.1| ribonuclease HI large subunit [Talaromyces marneffei ATCC 18224]
Length = 368
Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 105/264 (39%), Positives = 147/264 (55%), Gaps = 42/264 (15%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLAT--LNFADSKTLKEEKREELFEDL--- 69
C++G+DEAGRGPVLGPMVY Y P ++ L T +F DSK L R L + +
Sbjct: 71 CVLGVDEAGRGPVLGPMVYSAFYLPKHLERPLLTEEYSFDDSKVLTPVVRARLMQSICTP 130
Query: 70 --KVNDSVGWAVDIIDPRELSAKMLNKNK--INLNEISHDSAIGLITRVLN-IGILLTEV 124
++DS GWAV ++ R++SA M+ + NLN + D+ I +I VLN I +TEV
Sbjct: 131 GASLHDSCGWAVKLLSARDISAGMMRPSTGVYNLNAQAMDATIEIIRGVLNEKHINVTEV 190
Query: 125 YLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTL----RGWI 180
Y+DT+G+ YQAKL + FP++ V+KKADSLYP VS AS+VAKVTRD L + +
Sbjct: 191 YIDTIGNPATYQAKLQRLFPTLSITVAKKADSLYPCVSAASVVAKVTRDVALESCYQAFY 250
Query: 181 FEETAENMHRN-----------------FGSGYPGDHKHI---------IFGFPSLVRFS 214
+E ++++ +GSGYP D K + +FG+ + RFS
Sbjct: 251 QQEPSQDVEDTDMKDSETTPATKKEAAGWGSGYPSDSKCVNWLRQNMDSVFGWGNECRFS 310
Query: 215 WGTCTSHF--KDIVEVLWESDEMD 236
WGT KD + V W +DE D
Sbjct: 311 WGTAKEMLEGKDAIRVDWPADEDD 334
>gi|242807713|ref|XP_002485012.1| ribonuclease HI large subunit [Talaromyces stipitatus ATCC 10500]
gi|218715637|gb|EED15059.1| ribonuclease HI large subunit [Talaromyces stipitatus ATCC 10500]
Length = 386
Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 106/266 (39%), Positives = 147/266 (55%), Gaps = 46/266 (17%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATL--NFADSKTLKEEKREELFEDL--- 69
C++G+DEAGRGPVLGPMVY Y P +Q+L T +F DSK L R +L + +
Sbjct: 85 CVLGVDEAGRGPVLGPMVYSAFYLPKDLEQSLLTQEHSFDDSKVLTPVVRAQLMQSICTP 144
Query: 70 --KVNDSVGWAVDIIDPRELSAKMLNKNK--INLNEISHDSAIGLITRVLNIG-ILLTEV 124
++DS GWAV ++ R++SA M+ NLN + D+ + +I VLN I +TE+
Sbjct: 145 GQSLHDSCGWAVKLLSARDISAGMMRPGMGIYNLNAQAMDATVEIIRGVLNDKHINVTEI 204
Query: 125 YLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW---IF 181
Y+DT+G+ YQAKL + FP++ V+KKADSLYP VS AS+VAKVTRD L +
Sbjct: 205 YIDTIGNPATYQAKLQRLFPTLSITVAKKADSLYPCVSAASVVAKVTRDVALESCYRAFY 264
Query: 182 EETAE-------NMHRN---------------FGSGYPGDHKHI---------IFGFPSL 210
+E ++ NM + +GSGYP D K + +FG+ +
Sbjct: 265 QEPSQKTVDGDTNMMESSETIPPSVSKVEELGWGSGYPSDSKCVNWLRQNMDSVFGWGNE 324
Query: 211 VRFSWGTCTSHF--KDIVEVLWESDE 234
RFSWGT KD V V W +DE
Sbjct: 325 CRFSWGTAKEMLDGKDAVRVDWPADE 350
>gi|154318955|ref|XP_001558795.1| hypothetical protein BC1G_02429 [Botryotinia fuckeliana B05.10]
Length = 1493
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 107/263 (40%), Positives = 148/263 (56%), Gaps = 26/263 (9%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLA--TLNFADSKTLKEEKREELFEDLKVNDS 74
+GIDEAGRGPVLGPMVYG Y P L T +F DSK L R EL E L S
Sbjct: 69 LGIDEAGRGPVLGPMVYGLFYLPLPLSDPLLRNTHHFDDSKVLTPTVRSELMEKLCTPGS 128
Query: 75 -----VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 129
GWAVD++ R++ A M+ NLN + DS I LI V++ G+ + E+Y+D +
Sbjct: 129 DLYTQCGWAVDVMSARDIGANMMKPATYNLNAQAMDSTIALIQGVMDKGVNVKEIYIDAL 188
Query: 130 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTL----RGWIFEETA 185
G+ YQ KL + FP+ + V+KKADSLYP VS AS+ AKVTRD L ++ ++
Sbjct: 189 GNTVTYQKKLERIFPTAQITVAKKADSLYPCVSAASVCAKVTRDAALESLYESYMNKDGD 248
Query: 186 ENM----HRNFGSGYPGDHKHI---------IFGFPSLVRFSWGTCTSHFKDIVEVLWES 232
+ M ++GSGYP D + IFG+ S RFSWGT T D+ + +
Sbjct: 249 QKMGGTEEDSWGSGYPSDARATTWLKRNMDPIFGWGSECRFSWGT-TKDMLDLKGIAAKV 307
Query: 233 D-EMDEDVSSRRSGKRQLKLSDI 254
D ++ED +R++G R L+ S++
Sbjct: 308 DWPIEEDDETRKTGIRNLEFSEL 330
>gi|255731726|ref|XP_002550787.1| ribonuclease HI 35 large subunit [Candida tropicalis MYA-3404]
gi|240131796|gb|EER31355.1| ribonuclease HI 35 large subunit [Candida tropicalis MYA-3404]
Length = 356
Score = 171 bits (433), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 99/229 (43%), Positives = 132/229 (57%), Gaps = 23/229 (10%)
Query: 12 SNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLAT-LNFADSKTLKEEKREELFEDLK 70
S P ++G+DEAGRGPVLGPMVYG Y S+ L FADSK L E KREELF ++
Sbjct: 75 SEPIVLGVDEAGRGPVLGPMVYGVAYALESFSDGLQKKYGFADSKVLTESKREELFRLIE 134
Query: 71 --------VNDSVGWAVDIIDPRELSAKMLN---KNKINLNEISHDSAIGLITRVLNIGI 119
++ +GWA + R++S+ ML K NLN +HD I LI +VL G+
Sbjct: 135 ESSDNEKGLSKVIGWATTSMTARDISSGMLQSSGKGAYNLNSQAHDVTINLIKQVLKKGV 194
Query: 120 LLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW 179
++++++DTVG YQAKL FP I+ V+KKADS+YP+VS AS+VAKVTRD+ + +
Sbjct: 195 KISKIFVDTVGPPATYQAKLKGIFPDIEITVAKKADSIYPIVSAASVVAKVTRDKNIAYY 254
Query: 180 IFEETAENMHRNFGSGYPGD---------HKHIIFGFP-SLVRFSWGTC 218
H+ GSGYP D + IFG+ RFSW T
Sbjct: 255 NNHLDILKGHK-LGSGYPSDPNTKTWLNSNVDSIFGWCFGFARFSWATA 302
>gi|330925767|ref|XP_003301184.1| hypothetical protein PTT_12627 [Pyrenophora teres f. teres 0-1]
gi|311324289|gb|EFQ90711.1| hypothetical protein PTT_12627 [Pyrenophora teres f. teres 0-1]
Length = 332
Score = 171 bits (433), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 114/288 (39%), Positives = 153/288 (53%), Gaps = 36/288 (12%)
Query: 12 SNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLA--TLNFADSKTLKEEKREELFEDL 69
S ++G+DEAGRGPVLGPMVY Y P +L T +F DSK L E R L L
Sbjct: 47 SGEVVLGVDEAGRGPVLGPMVYALFYLPTELHHSLLADTHHFDDSKVLTPEVRSNLMRKL 106
Query: 70 -----KVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEV 124
+ D+ GWA ++ +++SA ML+ + NLN + D+ I LI VL G+ +TE+
Sbjct: 107 CTKGSDLYDAGGWATRLLSAQDISAHMLSPSVYNLNAQAMDATIDLIKGVLAQGVNVTEI 166
Query: 125 YLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEET 184
Y+DT+G E YQ KL + +P+I+ V+KKADSLYPVVS AS+ AKVTRD L + E
Sbjct: 167 YIDTIGKPEIYQRKLERIWPTIRITVAKKADSLYPVVSAASVCAKVTRDAALD--VCYEP 224
Query: 185 AENMHRN-----------FGSGYPGDHKHI---------IFGFPSLVRFSWGTCTSHF-- 222
HRN +GSGYP D + +FG+ S RFSWGT
Sbjct: 225 YH--HRNEAERGADVKVVWGSGYPSDARTTTWLKQNMDPLFGWGSETRFSWGTAKELLEG 282
Query: 223 -KDIVEVLW--ESDEMDEDVSSRRSGKRQLKLSDIGFSSSKRRSEEIE 267
K V V W E D D ++ GK + ++ KR +EE+E
Sbjct: 283 KKADVSVDWPVEDDSNDMRMTDFFVGKNESVSDELVDWFGKRVTEEME 330
>gi|339242469|ref|XP_003377160.1| ribonuclease H2 subunit A [Trichinella spiralis]
gi|316974057|gb|EFV57595.1| ribonuclease H2 subunit A [Trichinella spiralis]
Length = 418
Score = 171 bits (432), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 85/173 (49%), Positives = 116/173 (67%), Gaps = 3/173 (1%)
Query: 7 LPKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELF 66
LP + C +G+DEAGRGPVLGPMVY C C + L+TL DSKTL E++R +F
Sbjct: 172 LPNFVGKHCTLGVDEAGRGPVLGPMVYACGVCVTDNLEQLSTLKAKDSKTLTEDERSTIF 231
Query: 67 EDLKVNDS---VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTE 123
++++ + + + ++ P +S ML ++K NLNEISHD+A+ LI V + G+++ +
Sbjct: 232 KNMQSEKNSHLFAYTMKLLSPVYISKSMLGRSKYNLNEISHDTAMELIQIVCDAGVVVDK 291
Query: 124 VYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTL 176
V LDTVG EKY+AKL RFP I +VSKKADSL+ +VS ASI AKVTRD L
Sbjct: 292 VILDTVGPTEKYEAKLRSRFPKIDILVSKKADSLHTIVSAASICAKVTRDNHL 344
>gi|290991286|ref|XP_002678266.1| predicted protein [Naegleria gruberi]
gi|284091878|gb|EFC45522.1| predicted protein [Naegleria gruberi]
Length = 245
Score = 171 bits (432), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 111/240 (46%), Positives = 135/240 (56%), Gaps = 27/240 (11%)
Query: 13 NPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQT---LATLNFADSKTLKEEKREELFEDL 69
N +MGIDEAGRGPVLGP+VY C++C Y T + DSK L + RE++F+ L
Sbjct: 11 NAYVMGIDEAGRGPVLGPLVYACMFCKSKYNTDNFLKKTFHVNDSKKLTAKMREKIFKTL 70
Query: 70 KVNDS-VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNI----GILLTEV 124
K N V + I+ E+S KML++ K NLN ISHD AI LI G L EV
Sbjct: 71 KENSKIVHYITCIVQSDEISHKMLSRKKYNLNLISHDCAIHLIKTASETLSKKGKYLKEV 130
Query: 125 YLDTVGDAEKYQAKLSQRFPSIK-FVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEE 183
Y+DTVGD +KYQAKL ++FP I+ VV KKADS YPVV GASIVAKV RD I EE
Sbjct: 131 YIDTVGDPKKYQAKLQEKFPEIESIVVDKKADSKYPVVGGASIVAKVKRDE-----IVEE 185
Query: 184 TAENMHRNF--GSGYPGD-------HKHI--IFGFPSL-VRFSWGTCTSHFKD-IVEVLW 230
+ GSGY D +K + +FG+ VRFSW T D V V W
Sbjct: 186 IQSLKYSKLKMGSGYTSDKYTKDFLNKALDKVFGYHHTDVRFSWSTIKKILDDSAVSVEW 245
>gi|241957291|ref|XP_002421365.1| ribonuclease large subunit, putative [Candida dubliniensis CD36]
gi|223644709|emb|CAX40699.1| ribonuclease large subunit, putative [Candida dubliniensis CD36]
Length = 366
Score = 171 bits (432), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 99/243 (40%), Positives = 142/243 (58%), Gaps = 25/243 (10%)
Query: 12 SNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLAT-LNFADSKTLKEEKREELFEDLK 70
+ P ++G+DEAGRGPVLG MVYG Y S+ L FADSK L + KREELF+ ++
Sbjct: 87 TEPIVLGVDEAGRGPVLGAMVYGIAYSLESFSSKLQKEYGFADSKVLTDVKREELFKQIE 146
Query: 71 -----VNDSVGWAVDIIDPRELSAKMLN----KNKINLNEISHDSAIGLITRVLNIGILL 121
++ +GWA + R++S+ ML K NLNE +HD+ I LI +VL G+ +
Sbjct: 147 DPEHELHKHIGWATTTMTARDISSGMLQSVNGKGAYNLNEQAHDTTIDLIKQVLAKGVKI 206
Query: 122 TEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIF 181
+++++DTVG YQAKL + FP I V+KKADS+YP+VS AS+VAKVTRD ++ +
Sbjct: 207 SKIFVDTVGPPVTYQAKLKRFFPEIDVTVTKKADSIYPIVSTASVVAKVTRDTNIK--FY 264
Query: 182 EETAENMH-RNFGSGYPGD---------HKHIIFGF-PSLVRFSWGTCTSHF--KDIVEV 228
E + + GSGYP D + +FG+ +RFSW T + EV
Sbjct: 265 NENLPLLQGQKLGSGYPSDPNTNKWLNSNVDPVFGWCYGFIRFSWQTAKDSLVKNNAAEV 324
Query: 229 LWE 231
++E
Sbjct: 325 VYE 327
>gi|449300186|gb|EMC96198.1| hypothetical protein BAUCODRAFT_122230 [Baudoinia compniacensis
UAMH 10762]
Length = 335
Score = 171 bits (432), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 99/232 (42%), Positives = 131/232 (56%), Gaps = 19/232 (8%)
Query: 5 AALPKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTL--ATLNFADSKTLKEEKR 62
AAL S C++G+DEAGRGPVLGPMVY Y P + L T +F DSK L R
Sbjct: 48 AALRADMSTACVLGVDEAGRGPVLGPMVYALYYLPLPMHRLLLAETHHFDDSKALTPAVR 107
Query: 63 EELFEDL-----KVNDSVGWAVDIIDPRELSAKMLNKN-KINLNEISHDSAIGLITRVLN 116
EL E + + GWA + R++SA L N NLN + D+ + LI +VL+
Sbjct: 108 SELMEKVCSPQTDLFQHCGWATRSMSARDISAAQLKANGAYNLNAQAMDATVDLIQQVLD 167
Query: 117 IGILLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTL 176
+G+ + EVY+DT+G YQ +L + FPS+ V+KKADSLYP VS AS+ AKVTRD +L
Sbjct: 168 LGVNVCEVYIDTIGPPATYQKRLERIFPSLSITVAKKADSLYPCVSAASVCAKVTRDASL 227
Query: 177 RGW--IFEETAENMHRNFGSGYPGDHK---------HIIFGFPSLVRFSWGT 217
+ E A+ +GSGYP D + H +FG+ RFSWGT
Sbjct: 228 DVLYSTYAEIADCGEMAWGSGYPSDGRCTTWLKGNMHPLFGWGHECRFSWGT 279
>gi|344234362|gb|EGV66232.1| ribonuclease HII [Candida tenuis ATCC 10573]
gi|344234363|gb|EGV66233.1| hypothetical protein CANTEDRAFT_112777 [Candida tenuis ATCC 10573]
Length = 337
Score = 170 bits (431), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 104/252 (41%), Positives = 146/252 (57%), Gaps = 26/252 (10%)
Query: 5 AALPKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREE 64
+ +PK P I+G+DEAGRGP+LGPMVY YC Y+ L F DSK LK E R
Sbjct: 70 SHIPKVGDTPLILGVDEAGRGPILGPMVYTVAYCKEDYESDLKRYGFDDSKVLKHEFRLG 129
Query: 65 LF-----EDLKVNDSVGWAVDIIDPRELSAKML--NKNKINLNEISHDSAIGLITRVLNI 117
L+ +D ++N +G+ I+ +++S+ ML ++ NLNE +HD+ I LI ++
Sbjct: 130 LYKLIDQKDHELNQKIGYLSSILSAKDISSGMLRVHQGNYNLNEQAHDATINLIKALVEK 189
Query: 118 GILLTEVYLDTVGDAEKYQAKLSQRFPS--IKFVVSKKADSLYPVVSGASIVAKVTRDRT 175
+ + VY+DTVG EKYQAKLS F S IKF V+KKADSLYP+VS ASI+AKVTRD
Sbjct: 190 KVNIKRVYVDTVGPPEKYQAKLSNIFSSYNIKFTVTKKADSLYPIVSCASIIAKVTRDLY 249
Query: 176 LRGWIFEETAENMHRN--FGSGYPGDHK---------HIIFGFP-SLVRFSWGTCTSHF- 222
L + + + R GSGYP D + + +FG+ ++R+SW T
Sbjct: 250 LH---YYNQKDPLLRGTEMGSGYPSDPRTSRWLKEQINPVFGWHFGVLRYSWQTAKDSLD 306
Query: 223 -KDIVEVLWESD 233
VEV +E++
Sbjct: 307 KNKAVEVDYEAE 318
>gi|389624103|ref|XP_003709705.1| ribonuclease H2 subunit A [Magnaporthe oryzae 70-15]
gi|351649234|gb|EHA57093.1| ribonuclease H2 subunit A [Magnaporthe oryzae 70-15]
gi|440466622|gb|ELQ35881.1| ribonuclease H2 subunit A [Magnaporthe oryzae Y34]
gi|440489318|gb|ELQ68978.1| ribonuclease H2 subunit A [Magnaporthe oryzae P131]
Length = 355
Score = 170 bits (431), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 101/246 (41%), Positives = 133/246 (54%), Gaps = 36/246 (14%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTL--ATLNFADSKTLKEEKREELFEDL-- 69
PC++G+DEAGRGPVLGPMVYG Y P L T +F DSK L R L E L
Sbjct: 55 PCVLGVDEAGRGPVLGPMVYGVFYLPIPLSDPLLRETHHFDDSKVLTPAVRSSLMESLCT 114
Query: 70 --------KVNDSVGWAVDIIDPRELSAKML---NKNKINLNEISHDSAIGLITRVLNIG 118
+N + GWA+ + R++ A M+ NLN + D+ + LI V++ G
Sbjct: 115 PTLSQSAGSLNSTCGWAISSLSARDIGAGMMRPATSAAYNLNAQALDATVSLIQGVMDRG 174
Query: 119 ILLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRG 178
+ + E+Y+DTVG YQ KL + FP+ K VSKKADSLYP VS AS+ AKVTRD L
Sbjct: 175 VNVAEIYVDTVGPPAAYQKKLERFFPTAKVTVSKKADSLYPCVSAASVCAKVTRDAALEV 234
Query: 179 W---IFEETA-----ENMHRNFGSGYPGDHK---------HIIFGFPSLVRFSWGTCTSH 221
+ E A E+ +GSGYP D + H +FG+ + RFSWGT
Sbjct: 235 LYKNVLSEIAKAEGGEDEEIGWGSGYPSDARCVGWLKRNMHPVFGWGTECRFSWGT---- 290
Query: 222 FKDIVE 227
KD++E
Sbjct: 291 VKDMLE 296
>gi|224001680|ref|XP_002290512.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220973934|gb|EED92264.1| predicted protein, partial [Thalassiosira pseudonana CCMP1335]
Length = 249
Score = 170 bits (430), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 95/218 (43%), Positives = 128/218 (58%), Gaps = 17/218 (7%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I+GIDEAGRGPVLGPM Y Y S T F DSK L EKR LF+++K +DS+
Sbjct: 1 ILGIDEAGRGPVLGPMTYAAAYW--SPTATDIPEGFNDSKQLSAEKRASLFDEIKRSDSI 58
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
G+ + ++ E+S ML NLN +SHD+A+ +I VL+ G+ + Y+DTVG + Y
Sbjct: 59 GFVLRVLHASEISRNMLRSEPYNLNAMSHDAAMEMIWAVLDSGVKIETAYIDTVGMPDAY 118
Query: 136 QAKLSQRFP--SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH--RN 191
++KL + F +I+F+V KKAD+ Y S AS+VAK +RD + W + ET+ RN
Sbjct: 119 RSKLERVFQGHNIEFIVEKKADAKYAPCSAASVVAKESRDTLIANWKWTETSYEPKDGRN 178
Query: 192 FGSGYPGDHKHII-----------FGFPSLVRFSWGTC 218
FGSGYP D K FG+P VRFSWG
Sbjct: 179 FGSGYPSDPKCTTWMENNLNVDAPFGYPDFVRFSWGPA 216
>gi|425778544|gb|EKV16668.1| Ribonuclease [Penicillium digitatum Pd1]
Length = 333
Score = 170 bits (430), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 108/271 (39%), Positives = 147/271 (54%), Gaps = 31/271 (11%)
Query: 12 SNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLAT--LNFADSKTLKEEKREELFEDL 69
S PC++G+DEAGRGPVLGPMVYG Y P +L T +F DSK L RE L L
Sbjct: 49 STPCVLGVDEAGRGPVLGPMVYGAFYLPLDLHHSLLTEKHSFDDSKVLTPAVRENLMHLL 108
Query: 70 KVN-----DSVGWAVDIIDPRELSAKMLNKNK--INLNEISHDSAIGLITRVL-NIGILL 121
+S G+AV ++ R++S+ M+ NLN + D+ + +I V+ + G+ +
Sbjct: 109 NTPGYPLFESCGYAVKVLSARDISSGMMRSPTAVYNLNAQAMDATVEIIRGVVEDRGVDV 168
Query: 122 TEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI- 180
EVY+DT+G+ YQ KL + FPS+K V+KKADSLYP VS AS+VAKVTRD L
Sbjct: 169 REVYIDTIGNPATYQQKLERIFPSLKITVAKKADSLYPCVSAASVVAKVTRDVALEVMYE 228
Query: 181 ----FEETAENMHRNFGSGYPGDHKHI---------IFGFPSLVRFSWGTCTS--HFKDI 225
E++ + +GSGYP D K + +FG+ S RFSWGT K
Sbjct: 229 AVLRAEQSLSPTPQTWGSGYPSDSKCVGWLRRNMDTVFGWGSECRFSWGTAKEMLEMKGG 288
Query: 226 VEVLWESDE-----MDEDVSSRRSGKRQLKL 251
V W +E +DE + S GK K+
Sbjct: 289 ARVDWPDEEEGAPRLDEFLLSSAPGKSTGKV 319
>gi|169596915|ref|XP_001791881.1| hypothetical protein SNOG_01231 [Phaeosphaeria nodorum SN15]
gi|111069760|gb|EAT90880.1| hypothetical protein SNOG_01231 [Phaeosphaeria nodorum SN15]
Length = 345
Score = 169 bits (429), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 112/285 (39%), Positives = 151/285 (52%), Gaps = 32/285 (11%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLA--TLNFADSKTLKEEKREELFEDL--- 69
++G+DEAGRGPVLGPMVY Y P +L T +F DSK L E R +L +
Sbjct: 59 VVLGVDEAGRGPVLGPMVYALFYLPVELHHSLLADTHHFDDSKKLTPEVRSDLMRRICTP 118
Query: 70 --KVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLD 127
+ ++ GWA + +++SA ML+ N NLN + D+ I LI VL G+ +TE+Y+D
Sbjct: 119 GTDLYEAGGWATRSLSAQDISAHMLSPNVYNLNAQAMDATIDLIKEVLAKGVNVTEIYID 178
Query: 128 TVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTL---------RG 178
T+G E YQ KL + +P+I+ V+KKADSLYPVVS AS+ AKVTRD + R
Sbjct: 179 TIGRPETYQRKLERIWPTIRITVAKKADSLYPVVSAASVCAKVTRDAAINVCYAPYHSRA 238
Query: 179 WIFEETAENMHRN--FGSGYPGDHK---------HIIFGFPSLVRFSWGTCTSHF---KD 224
AEN N +GSGYP D K +FG+ + RFSWGT K
Sbjct: 239 LEAGTAAENAKVNVAWGSGYPSDSKTSTWLKQNMDPLFGWGNECRFSWGTAKELLEGKKP 298
Query: 225 IVEVLW--ESDEMDEDVSSRRSGKRQLKLSDIGFSSSKRRSEEIE 267
V V W E D D ++ GK ++ KR +EE+E
Sbjct: 299 DVNVDWPIEDDGNDMRMTDFFLGKNDTAGDELVDWFGKRVTEEME 343
>gi|170590300|ref|XP_001899910.1| ribonuclease HI large subunit [Brugia malayi]
gi|158592542|gb|EDP31140.1| ribonuclease HI large subunit, putative [Brugia malayi]
Length = 282
Score = 169 bits (429), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 83/181 (45%), Positives = 120/181 (66%), Gaps = 3/181 (1%)
Query: 11 ASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLK 70
+S PC +GIDEAGRGPVLGPMVY C + + L + DSK L E KREE+FE +K
Sbjct: 26 SSMPCAIGIDEAGRGPVLGPMVYTCAVTLVNNENMLTKIGVDDSKVLTEAKREEIFERMK 85
Query: 71 ---VNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLD 127
+++ G+A + + +SA ML + K +LN++SHD AI L+ ++ I + +VY+D
Sbjct: 86 GSNMSEIFGYACRSVSAQMISAAMLGRTKYSLNKLSHDCAIELLKLAVDNNINVVDVYVD 145
Query: 128 TVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAEN 187
TVG + YQA L ++FP ++ +VS+KAD+ +P+VS AS++AKV RDR LR W F E N
Sbjct: 146 TVGPKDPYQAMLHKKFPDMQIIVSEKADAKFPIVSAASVIAKVKRDRALRNWTFPEGIVN 205
Query: 188 M 188
+
Sbjct: 206 V 206
>gi|342879882|gb|EGU81115.1| hypothetical protein FOXB_08389 [Fusarium oxysporum Fo5176]
Length = 339
Score = 169 bits (429), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 98/240 (40%), Positives = 134/240 (55%), Gaps = 27/240 (11%)
Query: 11 ASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTL--ATLNFADSKTLKEEKREELFED 68
++ PC +G+DEAGRGPVLGPMVYG + P +L +F DSK L R +L
Sbjct: 56 SATPCCLGVDEAGRGPVLGPMVYGVFFLPIDLSDSLLREKHHFDDSKVLTPAVRSDLMRT 115
Query: 69 L-----KVNDSVGWAVDIIDPRELSAKMLNK-NKINLNEISHDSAIGLITRVLNIGILLT 122
L ++DS GWA + R++ A M N NLN + D+ + LI V +G+ +
Sbjct: 116 LCTPGSDLHDSCGWATASLSARDIGANMYRPTNAYNLNAQAMDATVDLIKAVYALGVNIQ 175
Query: 123 EVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFE 182
E+Y+DT+G YQAKL + FP+ K V+KKADSLY VS AS+ AKVTRD L +FE
Sbjct: 176 EIYVDTIGQPAAYQAKLQRVFPTAKITVAKKADSLYACVSAASVCAKVTRDAALE-VLFE 234
Query: 183 ETAENMHRN-----FGSGYPGDHK---------HIIFGFPSLVRFSWGTCTSHFKDIVEV 228
A+ ++ +GSGYP D + H +FG+ RFSWGT KD++E
Sbjct: 235 ARADEDEKDGEGMAWGSGYPSDGRCVGWMKGNMHPVFGWGPECRFSWGTA----KDMLEA 290
>gi|403176171|ref|XP_003888919.1| hypothetical protein, variant, partial [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
gi|375172134|gb|EHS64560.1| hypothetical protein, variant, partial [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
Length = 320
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 89/203 (43%), Positives = 118/203 (58%), Gaps = 19/203 (9%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSY-QQTLATLNFADSKTLKEEKREELFE------- 67
IMGIDEAGRGPVLGPMVYG +C ++ + L L FADSKTL +REEL E
Sbjct: 69 IMGIDEAGRGPVLGPMVYGAAFCTQAFAEDKLLDLGFADSKTLTHRRREELLEMIVHPPA 128
Query: 68 DLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLD 127
D +N+ V W V ++ P ++S M ++ NLN + D+ +I L++ L +Y+D
Sbjct: 129 DQPLNERVEWNVKVLTPADISQGMNRRSPYNLNAQAFDATCEIIQHALDLQYNLQHIYVD 188
Query: 128 TVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAEN 187
T+G + +Q KL Q FP IKF V KADS+YP+V AS+VAKVTRD + WI E+
Sbjct: 189 TLGPPKTHQMKLEQSFPGIKFTVCSKADSIYPIVGAASVVAKVTRDAIVSHWIHPESTHP 248
Query: 188 MHR-----------NFGSGYPGD 199
R + GSGYP D
Sbjct: 249 QKRKSSQEDEDATTSLGSGYPSD 271
>gi|451994868|gb|EMD87337.1| hypothetical protein COCHEDRAFT_1197453 [Cochliobolus
heterostrophus C5]
Length = 343
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 108/283 (38%), Positives = 151/283 (53%), Gaps = 30/283 (10%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLA--TLNFADSKTLKEEKREELFEDL--- 69
++G+DEAGRGPVLGPMVY Y P +L T +F DSK LK + R +L L
Sbjct: 59 VVLGVDEAGRGPVLGPMVYALFYLPIELHHSLLADTHHFDDSKVLKADVRSDLMRTLCTQ 118
Query: 70 --KVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLD 127
+ + GWA ++ +++SA ML + NLN + D+ I LI VL G+ + E+Y+D
Sbjct: 119 GTDLYKAGGWATRLLSAQDISAHMLQPSVYNLNAQAMDATIDLIKEVLVKGVNVKEIYID 178
Query: 128 TVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTL---------RG 178
T+G E YQ KL + +P+I V+KKADSLYPVVS AS+ AKVTRD L R
Sbjct: 179 TIGKPEIYQKKLERIWPTISITVAKKADSLYPVVSAASVCAKVTRDAALDVCYEPYHSRT 238
Query: 179 WIFEETAENMHRNFGSGYPGDHK---------HIIFGFPSLVRFSWGTCTSHF---KDIV 226
E + +GSGYPGD + +FG+ + RFSWGT K V
Sbjct: 239 DPEAEDGAQVQAAWGSGYPGDARTSAWMKQNMDPLFGWGNETRFSWGTAKEMLEGKKADV 298
Query: 227 EVLW--ESDEMDEDVSSRRSGKRQLKLSDIGFSSSKRRSEEIE 267
+ W E D D ++ +GK + +++ KR +EE+E
Sbjct: 299 SIDWPAEDDGNDMRMTDFFNGKNEAISNELVDWFGKRVTEEME 341
>gi|413916151|gb|AFW56083.1| hypothetical protein ZEAMMB73_828983 [Zea mays]
Length = 277
Score = 169 bits (428), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 89/162 (54%), Positives = 114/162 (70%), Gaps = 24/162 (14%)
Query: 53 DSKTLKEEKREELFEDLKVNDSVGWAVDIIDPRELSAKMLNKN-----KINLNEISHDSA 107
DSKTLKEE+REELFE LKVN S+ W VD+I P++LSAKML K+ K+NLNEISH+SA
Sbjct: 2 DSKTLKEEQREELFESLKVNSSIRWEVDVIRPKDLSAKMLKKSHCFRSKVNLNEISHNSA 61
Query: 108 IGLITRVLNIGILLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIV 167
+GL+ +VL++G+LL E Y+DTVGD +KY+ KL+++F KFVV+KK DSLY VVSGASIV
Sbjct: 62 MGLVRKVLDMGVLLAEAYIDTVGDLKKYRIKLTEKFTGFKFVVAKKVDSLYTVVSGASIV 121
Query: 168 AKVTR--DRTLRGWIFEETAENMHRNFGSGYPGDHKHIIFGF 207
AK D + W+ DHKH++FGF
Sbjct: 122 AKNINGADPDTKRWL-----------------EDHKHLVFGF 146
>gi|425774265|gb|EKV12578.1| Ribonuclease [Penicillium digitatum PHI26]
Length = 333
Score = 169 bits (428), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 108/271 (39%), Positives = 148/271 (54%), Gaps = 31/271 (11%)
Query: 12 SNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLAT--LNFADSKTLKEEKREELFEDL 69
S PC++G+DEAGRGPVLGPMVYG Y P +L T +F DSK L RE L L
Sbjct: 49 STPCVLGVDEAGRGPVLGPMVYGAFYLPLDLHHSLLTEKHSFDDSKVLTPAVRENLMHLL 108
Query: 70 KVN-----DSVGWAVDIIDPRELSAKMLNKNK--INLNEISHDSAIGLITRVL-NIGILL 121
+S G+AV ++ R++S+ M+ NLN + D+ + +I V+ + G+ +
Sbjct: 109 NTPGYPLFESCGYAVKVLSARDISSGMMRSPTAVYNLNAQAMDATVEIIRGVVEDRGVDV 168
Query: 122 TEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI- 180
EVY+DT+G+ YQ KL + FPS+K V+KKADSLYP VS AS+VAKVTRD L
Sbjct: 169 REVYIDTIGNPATYQQKLERIFPSLKITVAKKADSLYPCVSAASVVAKVTRDVALEVMYE 228
Query: 181 ----FEETAENMHRNFGSGYPGDHKHI---------IFGFPSLVRFSWGTCTSHFKDIV- 226
E++ + +GSGYP D K + +FG+ S RFSWGT + V
Sbjct: 229 AVLRAEQSLSPTPQTWGSGYPSDSKCVGWLRRNMDTVFGWGSECRFSWGTAKEMLEMKVG 288
Query: 227 -EVLWESDE-----MDEDVSSRRSGKRQLKL 251
V W +E +DE + S GK K+
Sbjct: 289 ARVDWPDEEEGAPRLDEFLLSSAPGKSTGKV 319
>gi|67480158|gb|AAY67993.1| ribonuclease HI large subunit [Oxyuranus scutellatus scutellatus]
Length = 211
Score = 169 bits (428), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 97/222 (43%), Positives = 123/222 (55%), Gaps = 23/222 (10%)
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
VGWA+ I+ P +S M + K NLN +SHD+AIGLI L+ G+ L EV++DTVG AEK
Sbjct: 1 VGWALHILSPNFISTSMQRRTKYNLNALSHDTAIGLIQHALDSGVQLAEVFVDTVGPAEK 60
Query: 135 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGS 194
YQ KL Q+FP ++ V KADSL+P VS ASI AKV RDR ++ W F E E+ ++GS
Sbjct: 61 YQEKLKQQFPELEVTVRAKADSLFPTVSAASICAKVARDRIVKNWKFLENLEDTEMDYGS 120
Query: 195 GYPGDHK---------HIIFGFPSLVRFSWGTCTSHFKD-IVEVLWESDEMDEDVSSRRS 244
GYP D K IFG+P VRFSW T + V V W+ ED S++S
Sbjct: 121 GYPNDPKTKEWLAQNLDPIFGYPQFVRFSWSTAQLILESKAVPVHWDD---TEDGPSQQS 177
Query: 245 GKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLT 286
K L S SKR +F RKLE +T
Sbjct: 178 AKSLLSYFTRKVSPSKRTPH----------RFFYERKLETVT 209
>gi|340521578|gb|EGR51812.1| predicted protein [Trichoderma reesei QM6a]
Length = 347
Score = 169 bits (428), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 99/254 (38%), Positives = 133/254 (52%), Gaps = 27/254 (10%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLA--TLNFADSKTLKEEKREELFEDL-- 69
PC++G+DEAGRGPVLGPMVYG + P L T +F DSK L R +L L
Sbjct: 62 PCVLGVDEAGRGPVLGPMVYGIFFLPADVSDALLRDTHHFDDSKVLSASVRSQLMHTLCT 121
Query: 70 ---KVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYL 126
++ S GWA + R++ A M+ NLN + D+ I LI V G+ + E+Y+
Sbjct: 122 PGSDLHSSCGWATTALSARDIGANMMRPVSYNLNAQAMDATIDLIRAVYAKGVNVKEIYV 181
Query: 127 DTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEE--- 183
DT+G YQAKL + FP+ K V+KKADSLY VS AS+ AKVTRD L
Sbjct: 182 DTIGPPATYQAKLQRVFPTAKVTVAKKADSLYACVSAASVCAKVTRDAALETLFHARQAA 241
Query: 184 -----TAENMHRNFGSGYPGDHK---------HIIFGFPSLVRFSWGTCTSHFK---DIV 226
A + +GSGYP D K H +FG+ RFSWGT + + V
Sbjct: 242 SAAAAAAADGPMEWGSGYPSDAKTVAWLRNNMHPLFGWGPECRFSWGTAKDMLESKGNGV 301
Query: 227 EVLWESDEMDEDVS 240
++ W +D+ D + S
Sbjct: 302 KIEWPADDDDGETS 315
>gi|402224753|gb|EJU04815.1| ribonuclease H-like protein [Dacryopinax sp. DJM-731 SS1]
Length = 312
Score = 169 bits (428), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 83/211 (39%), Positives = 121/211 (57%), Gaps = 11/211 (5%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS- 74
++GIDEAGRGP LGPMVY YCP ++Q L+ L F DSK L + R +L L + +
Sbjct: 51 MVGIDEAGRGPALGPMVYAAAYCPVDWEQ-LSELGFNDSKVLTADTRTKLLGTLSAHPTH 109
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
+GW+V ++ P +S ML + NLN S ++ + ++ +L G+ +T++++D +G +
Sbjct: 110 LGWSVQVLAPSSISQGMLARPPTNLNVQSQNATVHILRSLLQAGLNITQIFVDALGPSVP 169
Query: 135 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGS 194
YQ L FPS + V KADS+Y +V AS+ AK RD + W++EE + GS
Sbjct: 170 YQKYLQSLFPSAEVTVCPKADSIYEIVGAASVAAKTCRDAWMESWVWEEEGMPPGQELGS 229
Query: 195 GYPGDHK---------HIIFGFPSLVRFSWG 216
GYP D K FG+P LVRFSW
Sbjct: 230 GYPSDPKTQAWIANRLEKTFGYPRLVRFSWA 260
>gi|189195170|ref|XP_001933923.1| ribonuclease HI large subunit [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187979802|gb|EDU46428.1| ribonuclease HI large subunit [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 342
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 111/286 (38%), Positives = 153/286 (53%), Gaps = 31/286 (10%)
Query: 12 SNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLA--TLNFADSKTLKEEKREELFEDL 69
S ++G+DEAGRGPVLGPMVY Y P +L T +F DSK L E R L L
Sbjct: 56 SGEVVLGVDEAGRGPVLGPMVYALFYLPIELHHSLLADTHHFDDSKVLTPEVRSNLMRKL 115
Query: 70 -----KVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEV 124
+ D+ GWA ++ +++SA ML+ + NLN + D+ I LI VL G+ +TE+
Sbjct: 116 CTKGSDLYDAGGWATRLLSAQDISAHMLSPSVYNLNAQAMDATIDLIKGVLAQGVNVTEI 175
Query: 125 YLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFE-- 182
Y+DT+G E YQ KL + +P+I+ V+KKADSLYPVVS AS+ AKVTRD L +E
Sbjct: 176 YIDTIGKPEIYQRKLERIWPTIRITVAKKADSLYPVVSAASVCAKVTRDAALDV-CYEPY 234
Query: 183 -------ETAENMHRNFGSGYPGDHKHI---------IFGFPSLVRFSWGTCTSHF---K 223
E ++ +GSGYP D + +FG+ S RFSWGT K
Sbjct: 235 HNRNNEAERGTDVKVAWGSGYPSDARTTTWLKQNMDPLFGWGSETRFSWGTAKELLEGKK 294
Query: 224 DIVEVLW--ESDEMDEDVSSRRSGKRQLKLSDIGFSSSKRRSEEIE 267
V + W E D D ++ GK + ++ KR +EE+E
Sbjct: 295 ADVSIDWPVEDDGNDMRMTDFFVGKNESVGDELVDWFGKRVTEEME 340
>gi|156063040|ref|XP_001597442.1| hypothetical protein SS1G_01636 [Sclerotinia sclerotiorum 1980]
gi|154696972|gb|EDN96710.1| hypothetical protein SS1G_01636 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 361
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 109/268 (40%), Positives = 146/268 (54%), Gaps = 34/268 (12%)
Query: 3 SEAALPKWASNP---CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLA--TLNFADSKTL 57
++A+ P S P C +GIDEAGRGPVLGPMVYG Y P L T +F DSK L
Sbjct: 52 TDASKPDAPSIPGPACALGIDEAGRGPVLGPMVYGLFYLPLPLSDPLLRNTHHFDDSKVL 111
Query: 58 KEEKREELFEDLKVNDS-----VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLIT 112
R EL + L DS GWAVD++ R++ A M+ NLN + DS I LI
Sbjct: 112 TPTVRSELMKKLCTPDSDLYTQCGWAVDVLSARDIGANMMKPATYNLNAQAMDSTIALIQ 171
Query: 113 RVLNIGILLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTR 172
V++ G+ + E+Y+D +G+ YQ KL + FP+ + V+KKADSLYP VS AS+ AKVTR
Sbjct: 172 GVMDKGVNVKEIYIDALGNTVTYQKKLERIFPTAQITVAKKADSLYPCVSAASVCAKVTR 231
Query: 173 DRTL----RGWIFEETAENM------HRNFGSGYPGDHKHI---------IFGFPSLVRF 213
D L ++ ++ + M ++GSGYP D + IFG+ S RF
Sbjct: 232 DAALETLYESYVSKDGDQEMGGTEVAEDSWGSGYPSDARATAWLKRNMDPIFGWGSECRF 291
Query: 214 SWGTCTSHFKDI----VEVLWESDEMDE 237
SWGT T D+ +V W +E DE
Sbjct: 292 SWGT-TKDMLDLKGVAAKVDWPIEEDDE 318
>gi|452986900|gb|EME86656.1| hypothetical protein MYCFIDRAFT_30484 [Pseudocercospora fijiensis
CIRAD86]
Length = 336
Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 94/222 (42%), Positives = 128/222 (57%), Gaps = 19/222 (8%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLA--TLNFADSKTLKEEKREELFEDLKVN 72
C++G+DEAGRGPVLGPMVY Y P + ++L T F DSK L R EL E + +
Sbjct: 58 CVLGVDEAGRGPVLGPMVYALYYLPTTLHRSLLADTHKFDDSKVLTPAVRSELMEKICTS 117
Query: 73 DS-----VGWAVDIIDPRELSAKMLNKNKI-NLNEISHDSAIGLITRVLNIGILLTEVYL 126
D+ GWA + +++S+ ML + + NLN + D+ I LI +VL+ G+ + EVY+
Sbjct: 118 DTDLYRNCGWATRSLSAKDISSAMLRPHGVYNLNNQAMDATIDLIQQVLDSGVNIREVYI 177
Query: 127 DTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI--FEET 184
DT+G E YQ KL + FP++ V+KKADSLYP VS AS+ AKVTRD L F
Sbjct: 178 DTIGKPEVYQKKLEKIFPALNITVAKKADSLYPCVSAASVCAKVTRDAALEVLYTAFAGD 237
Query: 185 AENMHRNFGSGYPGDHK---------HIIFGFPSLVRFSWGT 217
+GSGYP D + +FG+ + RFSWGT
Sbjct: 238 GATTEMEWGSGYPSDARCSNWLKANMDPVFGWGNECRFSWGT 279
>gi|402076046|gb|EJT71469.1| ribonuclease H2 subunit A [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 373
Score = 168 bits (425), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 104/268 (38%), Positives = 138/268 (51%), Gaps = 43/268 (16%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTL--ATLNFADSKTLKEEKREELFEDL-- 69
PC +G+DEAGRGPVLGPMVYG Y P L T +F DSK LK E R L E L
Sbjct: 74 PCFLGVDEAGRGPVLGPMVYGVFYLPAPLSDPLLRETHHFDDSKVLKPEVRSALMEALCS 133
Query: 70 ---KVNDSVGWAVDIIDPRELSAKML---NKNKINLNEISHDSAIGLITRVLNIGILLTE 123
+ S GWAV + R++ A M+ + NLN + D+ + LI V++ G+ + E
Sbjct: 134 AGSDLYSSCGWAVSALSARDIGANMMRPASAAAYNLNAQAFDATVALIRGVMDRGVNVAE 193
Query: 124 VYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLR------ 177
+Y+DTVG YQ +L + FP+ + V+KKADSLYP VS AS+ AKVTRD L
Sbjct: 194 IYVDTVGPPATYQKRLERVFPTARVTVAKKADSLYPCVSAASVCAKVTRDAALEVLYKTV 253
Query: 178 ---------GWIFEETAE--NMHRNFGSGYPGDHK---------HIIFGFPSLVRFSWGT 217
G E+ E N ++GSGYP D + H +FG+ RFSWGT
Sbjct: 254 LRPPAAAPGGEEAEQDDEEGNEQASWGSGYPSDARCVTWMRRNMHPVFGWGPECRFSWGT 313
Query: 218 CTSHFKDI-------VEVLWESDEMDED 238
+ V+V W D+ E+
Sbjct: 314 AKEMLEPTGTAKVASVKVDWPLDDDGEN 341
>gi|358396936|gb|EHK46311.1| hypothetical protein TRIATDRAFT_6664, partial [Trichoderma
atroviride IMI 206040]
Length = 334
Score = 168 bits (425), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 102/262 (38%), Positives = 135/262 (51%), Gaps = 39/262 (14%)
Query: 11 ASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLA--TLNFADSKTLKEEKREELFED 68
++ PC++G+DEAGRGPVLGPMVYG + P L T +F DSK L R +L E
Sbjct: 44 SAPPCVLGVDEAGRGPVLGPMVYGIFFLPADISDPLLRDTHHFDDSKVLSAAVRSQLMET 103
Query: 69 L-----KVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTE 123
L +++S GWA + R++ A ML NLN + D+ + LI V G+ + E
Sbjct: 104 LCTPGSDLHESCGWATTALSARDIGANMLRPVPYNLNAQAMDATMDLIRAVYAKGVNIKE 163
Query: 124 VYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIF-- 181
+Y+DT+G YQAKL + FP+ K V+KKADSLY VS AS+ AKV+RD L
Sbjct: 164 IYVDTIGPPASYQAKLQRVFPTAKVTVAKKADSLYACVSAASVCAKVSRDAALEKLFHAR 223
Query: 182 ----------EETAENMHRNFGSGYPGDHK---------HIIFGFPSLVRFSWGTCTSHF 222
E E +GSGYP D K H +FG+ RFSW T
Sbjct: 224 QVATAVANGEEVPVEEGTMEWGSGYPSDSKTSTWLRNNMHPLFGWGPECRFSWSTA---- 279
Query: 223 KDIVE-------VLWESDEMDE 237
KD++E V W +DE E
Sbjct: 280 KDLLEGKGNGVKVEWPADEDGE 301
>gi|123502031|ref|XP_001328204.1| ribonuclease HII family protein [Trichomonas vaginalis G3]
gi|121911144|gb|EAY15981.1| ribonuclease HII family protein [Trichomonas vaginalis G3]
Length = 269
Score = 168 bits (425), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 97/219 (44%), Positives = 128/219 (58%), Gaps = 15/219 (6%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVG 76
MGIDEAGRGP LGPMVY P Y+ + DSK L E+REE+F+++K VG
Sbjct: 22 MGIDEAGRGPALGPMVYSGAIAPNKYEWPK---DVDDSKKLTAEQREEIFDEIK-KLPVG 77
Query: 77 WAVDIIDPRELSAKM--LNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
+AV +I E+SAK L I+LN +SH +A L+ L+ G+ + +Y+DTVG AE
Sbjct: 78 FAVRVISAEEISAKQTALVNPPISLNTVSHHAARDLVQAFLDKGLNIKALYVDTVGIAES 137
Query: 135 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGS 194
YQ L +FP+IK V KAD+ Y VV ASI AKVTRDR L + FEE + ++GS
Sbjct: 138 YQDWLQDKFPNIKVTVRAKADATYKVVGAASICAKVTRDRLLADFKFEEPGLEISHDWGS 197
Query: 195 GYPGDHK---------HIIFGFPSLVRFSWGTCTSHFKD 224
GYP D K +FG+PS+ RF W F++
Sbjct: 198 GYPSDPKTSNWLETNFDPVFGYPSVARFDWKPIKMMFEN 236
>gi|116200221|ref|XP_001225922.1| hypothetical protein CHGG_08266 [Chaetomium globosum CBS 148.51]
gi|88179545|gb|EAQ87013.1| hypothetical protein CHGG_08266 [Chaetomium globosum CBS 148.51]
Length = 344
Score = 167 bits (424), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 107/263 (40%), Positives = 138/263 (52%), Gaps = 40/263 (15%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTL--ATLNFADSKTLKEEKREELFEDL-- 69
PC +G+DEAGRGPVLGPMVYG Y P L T +F DSK L R L E L
Sbjct: 59 PCALGVDEAGRGPVLGPMVYGVFYLPIPLSDPLLRTTHHFDDSKVLTPAVRASLMETLCT 118
Query: 70 ---KVNDSVGWAVDIIDPRELSAKMLNKN--KINLNEISHDSAIGLITRVLNIGILLTEV 124
+ +S GWAVD + R++ A ML NLN + D+ + LI V G+ + E+
Sbjct: 119 PTSDLYESCGWAVDALSARDIGAGMLRPGLGAYNLNAQAMDATVELIKGVYARGVNVREI 178
Query: 125 YLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRG-W---- 179
Y+DT+G YQAKL++ FP+ K V+KKADSLYP VS AS+ AKVTRD L W
Sbjct: 179 YVDTIGQPAAYQAKLARVFPAAKVTVAKKADSLYPSVSAASVCAKVTRDVALETLWKARG 238
Query: 180 IFEETAENMHRNFGSGYPGDHK---------HIIFGFPSLVRFSWGTCTSHFKDIVE--- 227
E +GSGYP D + H ++G+ RFSWGT KD++E
Sbjct: 239 GGGEEGVEETMAWGSGYPSDGRCVTWLKSNMHPVWGWGPECRFSWGTA----KDMIEATP 294
Query: 228 -------VLWESDEMDEDVSSRR 243
V W +DED ++R
Sbjct: 295 AKGGGVNVEW---PVDEDADTQR 314
>gi|149235450|ref|XP_001523603.1| ribonuclease HI large subunit [Lodderomyces elongisporus NRRL
YB-4239]
gi|146452582|gb|EDK46838.1| ribonuclease HI large subunit [Lodderomyces elongisporus NRRL
YB-4239]
Length = 414
Score = 167 bits (424), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 102/230 (44%), Positives = 134/230 (58%), Gaps = 28/230 (12%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLA-TLNFADSKTLKEEKREELF---EDL 69
P +G+DEAGRGPVLGPMVYG Y S+ + L FADSK L +KRE LF ED
Sbjct: 133 PVELGVDEAGRGPVLGPMVYGIAYSLLSFLKCLQKQYGFADSKQLTGDKRELLFKMMEDT 192
Query: 70 KVNDS----VGWAVDIIDPRELSAKML-----NKNKINLNEISHDSAIGLITRVLNIGIL 120
+ + VGWA + +++S ML K NLNE +HD+ I LI +L+ G+
Sbjct: 193 HIENGLSKHVGWATTTMTAKDISLGMLRLVSNGKGVYNLNEQAHDATIELIRLILSKGVN 252
Query: 121 LTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 180
+T +Y+DTVG YQAKL + FP+I V+KKADS+YP+VS AS+VAKVTRD L+
Sbjct: 253 ITAIYVDTVGPPATYQAKLKKLFPTIDITVTKKADSIYPIVSTASVVAKVTRDLNLK--- 309
Query: 181 FEETAENMHRN--FGSGYPGD---------HKHIIFGFP-SLVRFSWGTC 218
+ N+ +N GSGYP D + IFG+ +RFSW T
Sbjct: 310 YANQHINLLKNHALGSGYPSDPNTSFWLNHNVDPIFGWCFGFIRFSWQTA 359
>gi|255931627|ref|XP_002557370.1| Pc12g05230 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211581989|emb|CAP80150.1| Pc12g05230 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 343
Score = 167 bits (423), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 107/273 (39%), Positives = 146/273 (53%), Gaps = 34/273 (12%)
Query: 12 SNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLAT--LNFADSKTLKEEKREELFEDL 69
S PC++GIDEAGRGPVLGPMVYG Y P +L T +F DSK L R L L
Sbjct: 58 STPCVLGIDEAGRGPVLGPMVYGAFYLPLDLHHSLLTEKHSFDDSKVLTPAVRANLMHLL 117
Query: 70 KVN-----DSVGWAVDIIDPRELSAKMLNKNK--INLNEISHDSAIGLITRVL-NIGILL 121
+S G+A+ ++ R++S+ M+ NLN + D+ + +I V+ + G+ +
Sbjct: 118 NTPGDSLFESCGYAIKVLSARDISSGMMRSPTAVYNLNAQAMDATVEIIRGVVEDRGVDV 177
Query: 122 TEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIF 181
EVY+DT+G+ YQ KL + FPS+K V+KKADSLYP VS AS+ AKVTRD L ++
Sbjct: 178 REVYIDTIGNPATYQQKLERIFPSLKITVAKKADSLYPCVSAASVAAKVTRDVALE-VMY 236
Query: 182 EETAENMH------RNFGSGYPGDHKHI---------IFGFPSLVRFSWGTCTS--HFKD 224
E + H +GSGYP D K + +FG+ + RFSWGT K
Sbjct: 237 EAVLQAEHSLSPTSETWGSGYPSDSKCVGWLRRNMDPVFGWGNECRFSWGTAKEMLEMKG 296
Query: 225 IVEVLWESDE------MDEDVSSRRSGKRQLKL 251
V W DE +DE + S GK K+
Sbjct: 297 GARVDWPDDEEEGAHRLDEFLLSSAPGKSTGKV 329
>gi|327297598|ref|XP_003233493.1| ribonuclease HI large subunit [Trichophyton rubrum CBS 118892]
gi|326464799|gb|EGD90252.1| ribonuclease HI large subunit [Trichophyton rubrum CBS 118892]
Length = 361
Score = 167 bits (423), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 107/264 (40%), Positives = 143/264 (54%), Gaps = 41/264 (15%)
Query: 13 NPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLAT--LNFADSKTLKEEKREELFEDL- 69
PC++GIDEAGRGPVLGPMVY Y P ++L +F DSK L E R L L
Sbjct: 65 TPCVLGIDEAGRGPVLGPMVYSAFYLPVHLHKSLLADEHHFDDSKVLTPEVRSNLMRSLC 124
Query: 70 ----KVNDSVGWAVDIIDPRELSAKMLNKNK---INLNEISHDSAIGLITRVLNI-GILL 121
++DS GWAV ++ R++S+ ML + NLN + D+ I +I V+ GI +
Sbjct: 125 TQGHPLHDSCGWAVKVMSARDISSGMLRPSMAAVYNLNAQALDATIEIIRGVVETHGIDV 184
Query: 122 TEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRG--- 178
EVY+DT+G E +QA+L + FP +K V+KKADSLYP VS AS+ AKVTRD L
Sbjct: 185 KEVYVDTIGKPETHQARLLRVFPGLKITVAKKADSLYPCVSAASVCAKVTRDAALEACYE 244
Query: 179 -WIF--------------EETAENMHRNFGSGYPGDHKHI---------IFGFPSLVRFS 214
W+ E TAE + +GSGYP D K + +FG+ RFS
Sbjct: 245 SWLNQREKQRAVATGEDEESTAEEI-LTWGSGYPSDGKCVGWLKKDMNRLFGWGYECRFS 303
Query: 215 WGTCTS--HFKDIVEVLWESDEMD 236
WGT K ++V W ++E D
Sbjct: 304 WGTSKELLEIKSGLKVDWPTEEDD 327
>gi|365987942|ref|XP_003670802.1| hypothetical protein NDAI_0F02410 [Naumovozyma dairenensis CBS 421]
gi|343769573|emb|CCD25559.1| hypothetical protein NDAI_0F02410 [Naumovozyma dairenensis CBS 421]
Length = 299
Score = 167 bits (423), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 113/254 (44%), Positives = 148/254 (58%), Gaps = 36/254 (14%)
Query: 12 SNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQ--TLATLNFADSKTLKEEKREELF--- 66
++P IMG+DEAGRGPVLGPMVYG YC YQ + F DSK L + R +LF
Sbjct: 43 ASPIIMGVDEAGRGPVLGPMVYGVSYCTEEYQNETIIPNYEFDDSKKLTDPIRRKLFSKM 102
Query: 67 -----EDLKVN----DSVGWAVDIIDPRELSAKMLN---KNKINLNEISHDSAIGLITRV 114
DL+ + DS+G+A I P ++S+ ML + NLNE +HD + LI V
Sbjct: 103 YRHNSHDLQKDEIELDSIGYATTSITPLDISSGMLKYPPEKVYNLNEQAHDVTMALIQGV 162
Query: 115 LNIGILLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDR 174
LN+G+ L+ VY+DTVG ++ YQ KL RFPS++F V+KKADSL+ VVS AS+VAKVTRD
Sbjct: 163 LNLGVNLSHVYVDTVGPSQTYQKKLQDRFPSVEFTVTKKADSLFCVVSVASVVAKVTRDI 222
Query: 175 TLRGWIFEETAENMHRNFGSGYPGDHK---------HIIFGFP-SLVRFSWGTCTSHFKD 224
+ E E + GSGYP D K ++FG+P +VRFSW TC + K
Sbjct: 223 LVESLKRPEVDEII----GSGYPSDAKTTKWLRENQTLLFGWPKEMVRFSWQTCQTLLKK 278
Query: 225 IVE-----VLWESD 233
E + WE D
Sbjct: 279 NDEANGLLIQWEED 292
>gi|407042272|gb|EKE41240.1| ribonuclease HII protein [Entamoeba nuttalli P19]
Length = 270
Score = 167 bits (422), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 103/258 (39%), Positives = 140/258 (54%), Gaps = 31/258 (12%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVG 76
+GIDEAGRGPVLGPMVY + + + ++T+ F DSK L RE+LF D+K + G
Sbjct: 17 IGIDEAGRGPVLGPMVYSAFFT--TNTEVISTMGFHDSKILSRTMREKLFTDIKESAVCG 74
Query: 77 WAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGIL-LTEVYLDTVGDAEKY 135
++ I+ P +S M K++LNEI+ + +I +++ + +Y DTVG ++KY
Sbjct: 75 FSTRILTPSYISQMMCGPQKVSLNEIAFSAVRDIIHQIIRTSQRKIVHIYCDTVGPSKKY 134
Query: 136 QAKLSQRFPSIKF---VVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH-RN 191
QA ++ F +K V KAD LYPVVS ASI AKVTRD L WI+EET N+ R
Sbjct: 135 QAMIANEFKEVKLSQITVCPKADGLYPVVSAASICAKVTRDTCLDNWIYEET--NIQTRQ 192
Query: 192 FGSGYPGDHKHI---------IFGFPSLVRFSWGTCTSHFKDIVEVLWESDEMDEDVSSR 242
G GYP D I +FG+P+LVRF W T K I+E E V +
Sbjct: 193 VGCGYPSDVDTIKWMKCQYDPLFGYPNLVRFGWETS----KRIIE---------EKVPMK 239
Query: 243 RSGKRQLKLSDIGFSSSK 260
R Q K +G SK
Sbjct: 240 RPFPYQNKQDVVGIIQSK 257
>gi|183232283|ref|XP_655093.2| RNase HI large subunit [Entamoeba histolytica HM-1:IMSS]
gi|169802113|gb|EAL49706.2| RNase HI large subunit, putative [Entamoeba histolytica HM-1:IMSS]
gi|449708100|gb|EMD47623.1| rnase HI large subunit, putative [Entamoeba histolytica KU27]
Length = 270
Score = 166 bits (421), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 103/258 (39%), Positives = 140/258 (54%), Gaps = 31/258 (12%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVG 76
+GIDEAGRGPVLGPMVY + + + ++T+ F DSK L RE+LF D+K + G
Sbjct: 17 IGIDEAGRGPVLGPMVYSAFFT--TNTEVISTMGFHDSKILSRTMREKLFTDIKESGVCG 74
Query: 77 WAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGIL-LTEVYLDTVGDAEKY 135
++ I+ P +S M K++LNEI+ + +I +++ + +Y DTVG ++KY
Sbjct: 75 FSTRILTPSYISQMMCGPQKVSLNEIAFSAVRDIIHQIIRTSQRKIVHIYCDTVGPSKKY 134
Query: 136 QAKLSQRFPSIKF---VVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH-RN 191
QA ++ F +K V KAD LYPVVS ASI AKVTRD L WI+EET N+ R
Sbjct: 135 QAMIANEFKEVKLSQITVCPKADGLYPVVSAASICAKVTRDTCLDNWIYEET--NIQTRQ 192
Query: 192 FGSGYPGDHKHI---------IFGFPSLVRFSWGTCTSHFKDIVEVLWESDEMDEDVSSR 242
G GYP D I +FG+P+LVRF W T K I+E E V +
Sbjct: 193 VGCGYPSDVDTIKWMKCQYDPLFGYPNLVRFGWETS----KRIIE---------EKVPMK 239
Query: 243 RSGKRQLKLSDIGFSSSK 260
R Q K +G SK
Sbjct: 240 RPFPYQNKQDVVGIIQSK 257
>gi|315044861|ref|XP_003171806.1| ribonuclease H2 subunit A [Arthroderma gypseum CBS 118893]
gi|311344149|gb|EFR03352.1| ribonuclease H2 subunit A [Arthroderma gypseum CBS 118893]
Length = 362
Score = 166 bits (421), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 106/262 (40%), Positives = 140/262 (53%), Gaps = 40/262 (15%)
Query: 13 NPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLAT--LNFADSKTLKEEKREELFEDL- 69
PC++GIDEAGRGPVLGPMVY Y P +L +F DSK L E R L L
Sbjct: 65 TPCVLGIDEAGRGPVLGPMVYSAFYLPIHLHNSLLADEHHFDDSKVLTPEVRSNLMRSLC 124
Query: 70 ----KVNDSVGWAVDIIDPRELSAKMLNKNKI---NLNEISHDSAIGLITRVLNI-GILL 121
+++S GWAV ++ R++S+ ML + NLN + D+ I +I V+ GI +
Sbjct: 125 TQGHSLHNSCGWAVKVMSARDISSGMLRPSMAAVYNLNAQALDATIEIIRGVVETQGIDV 184
Query: 122 TEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRG--- 178
EVY+DT+G E +QA+L + FP +K V+KKADSLYP VS AS+ AKVTRD L
Sbjct: 185 KEVYVDTIGKPETHQARLLRVFPGLKITVAKKADSLYPCVSAASVCAKVTRDAALEACYE 244
Query: 179 -WIFEE--------------TAENMHRNFGSGYPGDHKHI---------IFGFPSLVRFS 214
W+ + TAE ++GSGYP D K I +FG+ RFS
Sbjct: 245 SWVNQRKRKRSLESGGGEAVTAEEETLSWGSGYPSDGKCIGWLKKDMNPLFGWGIECRFS 304
Query: 215 WGTCTS--HFKDIVEVLWESDE 234
WGT K V+V W +E
Sbjct: 305 WGTSKELLEIKSGVKVDWPVEE 326
>gi|156842375|ref|XP_001644555.1| hypothetical protein Kpol_1003p2 [Vanderwaltozyma polyspora DSM
70294]
gi|156115201|gb|EDO16697.1| hypothetical protein Kpol_1003p2 [Vanderwaltozyma polyspora DSM
70294]
Length = 312
Score = 166 bits (421), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 113/269 (42%), Positives = 150/269 (55%), Gaps = 40/269 (14%)
Query: 11 ASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFA--DSKTLKEEKREELFED 68
+S+P I+G+DEAGRGPV+GPMVYG YC YQ T+ +A DSK L + R LF
Sbjct: 33 SSSPVILGVDEAGRGPVMGPMVYGISYCTKEYQDTVLIPKYAFDDSKKLTDNIRRNLFSK 92
Query: 69 LKVN----------DSVGWAVDIIDPRELSAKMLN---KNKINLNEISHDSAIGLITRVL 115
+ D VG+A I P ++S+ ML NLNE +HD + LI ++
Sbjct: 93 MYDQNGDGTGEIEIDGVGYATTAITPVDISSGMLRYPPSQNYNLNEQAHDVTMNLIQGLV 152
Query: 116 NIGILLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRT 175
G+ + VY+DTVG YQ KL RFP+IKF V+KKADSLY VVS AS+VAKVTRD
Sbjct: 153 EKGVTIDHVYVDTVGPPVSYQKKLETRFPNIKFTVAKKADSLYCVVSVASVVAKVTRDI- 211
Query: 176 LRGWIFEETAENMHRNFGSGYPGDHKHI---------IFGFP-SLVRFSWGTCTSHFKD- 224
I E+ N + GSGYP D K +F +P SLVRFSW TC + K+
Sbjct: 212 ----ILEQMKSNENEILGSGYPSDPKTTAWLAKNQKQLFAWPQSLVRFSWQTCQTLIKED 267
Query: 225 -----IVEVLWESDEMDEDVSSRRSGKRQ 248
+V + WE D ++S+++ +Q
Sbjct: 268 KHKIGMVPIEWEEDY----INSKKNMSKQ 292
>gi|323449222|gb|EGB05112.1| hypothetical protein AURANDRAFT_12637 [Aureococcus anophagefferens]
Length = 229
Score = 166 bits (421), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 87/220 (39%), Positives = 129/220 (58%), Gaps = 13/220 (5%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTL--ATLNFADSKTLKEEKREELFEDLKVNDS 74
+GIDEAGRGPVLG M +G Y + + + DSK L +EKR +LF+ + ++
Sbjct: 11 LGIDEAGRGPVLGAMTFGTCYWSIADDDAIEASQKEIDDSKQLTDEKRSKLFDRIAADER 70
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
+GWAV+++ +SA+ML +LN IS D+ LI RVL+ G + E ++DTVG+ +
Sbjct: 71 MGWAVEVVSAARISAEMLQVKPTSLNAISFDATCRLIQRVLDRGADVVEAFVDTVGNPDS 130
Query: 135 YQAKLSQRFPS-IKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG 193
Y +L++ F IKF V+KKAD+LY ASI AKV RD ++ W ++E + +FG
Sbjct: 131 YSERLTRAFDGKIKFTVAKKADALYKCTGAASICAKVCRDLSIARWTYDEPGVD-DLDFG 189
Query: 194 SGYPGD---------HKHIIFGFPSLVRFSWGTCTSHFKD 224
SGYP D + H +FG+P+ RFSW + +D
Sbjct: 190 SGYPSDPACVAWLARNVHGVFGYPNFCRFSWAPAKARLRD 229
>gi|302510819|ref|XP_003017361.1| hypothetical protein ARB_04241 [Arthroderma benhamiae CBS 112371]
gi|291180932|gb|EFE36716.1| hypothetical protein ARB_04241 [Arthroderma benhamiae CBS 112371]
Length = 361
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 105/263 (39%), Positives = 141/263 (53%), Gaps = 39/263 (14%)
Query: 13 NPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLAT--LNFADSKTLKEEKREELFEDL- 69
PC++GIDEAGRGPVLGPMVY Y P ++L +F DSK L E R L L
Sbjct: 65 TPCVLGIDEAGRGPVLGPMVYSAFYLPIHLHKSLLADEHHFDDSKVLTPEVRSNLMRSLC 124
Query: 70 ----KVNDSVGWAVDIIDPRELSAKMLNKNK---INLNEISHDSAIGLITRVLNI-GILL 121
++DS GWAV ++ R++S+ ML + NLN + D+ I +I V+ GI +
Sbjct: 125 TQSHPLHDSCGWAVKVMSARDISSGMLRPSMAAVYNLNAQALDATIEIIRGVVETQGINV 184
Query: 122 TEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRG--- 178
EVY+DT+G E +QA+L + FP +K V+KKADSLYP VS AS+ AKVTRD L
Sbjct: 185 KEVYVDTIGKPETHQARLLRVFPGLKITVAKKADSLYPCVSAASVCAKVTRDAALEACYE 244
Query: 179 -WIF-------------EETAENMHRNFGSGYPGDHKHI---------IFGFPSLVRFSW 215
W+ E T + +GSGYP D K + +FG+ RFSW
Sbjct: 245 SWLNQREKQRTLVTGEDEATTADEILTWGSGYPSDGKCVGWLKKDMNRLFGWGVECRFSW 304
Query: 216 GTCTS--HFKDIVEVLWESDEMD 236
GT K ++V W ++E D
Sbjct: 305 GTSKELLEIKSGLKVDWPAEEDD 327
>gi|440638129|gb|ELR08048.1| hypothetical protein GMDG_02886 [Geomyces destructans 20631-21]
Length = 397
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 110/297 (37%), Positives = 143/297 (48%), Gaps = 57/297 (19%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTL--ATLNFADSKTLKEEKREELFEDL--- 69
C +G+DEAGRGPVLGPMVYG Y P L T +F DSK L R +L E L
Sbjct: 90 CALGVDEAGRGPVLGPMVYGAFYLPVPLSTPLLSKTHHFDDSKVLTAGFRAQLMETLCTP 149
Query: 70 -------------KVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLN 116
+ D+ GWAV ++ R +SA M+ NLNE + D+ I LI V
Sbjct: 150 TVPPAPETSPDPSSLYDNCGWAVSVLSARAISANMMRPAMYNLNEQAMDATIHLIKTVYE 209
Query: 117 IGILLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTL 176
+G+ + E+Y+DT+G YQ KL + FP+ V+KKADSLYP VS AS+ AKVTRDR L
Sbjct: 210 MGVNVREIYIDTIGQPGPYQKKLERIFPTASITVAKKADSLYPCVSAASVCAKVTRDRAL 269
Query: 177 R------GWIFEETA-------------ENMHRNFGSGYPGDHK---------HIIFGFP 208
G E+ A ++GSGYP D + +FG+
Sbjct: 270 EVLYEAYGGSNEDAAGKEDVTMGDSEDEPAPEADWGSGYPSDARCSTWLKRNIDPVFGWG 329
Query: 209 SLVRFSWGTCTSHFKD----IVEVLWESDEMDEDVS------SRRSGKRQLKLSDIG 255
RFSW T +D V W ++E DED S SGK Q ++G
Sbjct: 330 PECRFSWSTTKDLLEDNKAMAAHVDWPAEE-DEDTHRVTDYFSADSGKEQKADDELG 385
>gi|296422347|ref|XP_002840722.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295636945|emb|CAZ84913.1| unnamed protein product [Tuber melanosporum]
Length = 336
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 100/244 (40%), Positives = 132/244 (54%), Gaps = 34/244 (13%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
I+G+DEAGRGPVLGPMVY YC S L F DSK L R L + L D+
Sbjct: 63 VILGVDEAGRGPVLGPMVYAVAYCLKSDNPMLREHKFDDSKKLTHSLRTHLLQTLTTPDT 122
Query: 75 -----VGWAVDIIDPRELSAKML----NKNKINLNEISHDSAIGLITRVLNIGILLTEVY 125
+GW+ + PR++S+ ML + + NLN + D+ LIT VL+ G+ + E+Y
Sbjct: 123 TLHRNLGWSTISLSPRDISSGMLRSTTSSSTYNLNAQAFDATTTLITAVLSSGVNIREIY 182
Query: 126 LDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETA 185
+DTVG A YQ++L + FP I VSKKADS+YP+VS AS+ AKVTRD + G + E
Sbjct: 183 VDTVGTASTYQSRLQKLFPHIAVTVSKKADSIYPIVSAASVCAKVTRDAAI-GVLVPEGE 241
Query: 186 ENMHRNFGSGYPGDHK---------HIIFGFP-SLVRFSWGTCTSHFK---------DIV 226
E GSGYPGD K +FG+ + RFSW T + V
Sbjct: 242 E-----IGSGYPGDEKTKEWLRREMEPVFGWEVGMARFSWATARDMLEGGGKNGGGGKGV 296
Query: 227 EVLW 230
EV+W
Sbjct: 297 EVVW 300
>gi|409078396|gb|EKM78759.1| hypothetical protein AGABI1DRAFT_92329 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 237
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 92/204 (45%), Positives = 119/204 (58%), Gaps = 24/204 (11%)
Query: 11 ASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLK 70
A P I+G+DEAGRGPVLGP+VYG YCP S++ L L FADSKTL E R LF+ L
Sbjct: 29 AEGPYILGVDEAGRGPVLGPLVYGVAYCPVSFKGKLEGLGFADSKTLAAEARSSLFDTLS 88
Query: 71 VNDS-VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTE------ 123
S +GW+ +S+ M+ + INLN S ++ LI L GI LTE
Sbjct: 89 SEPSNLGWSA-------ISSGMMKRPPINLNVQSEEATFLLIRETLAKGIQLTEVLISSN 141
Query: 124 ------VYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLR 177
VY+D +G+ Y+ +LS+ FP I F V+ KADS + +V AS+ AKVTRD +
Sbjct: 142 QEALTDVYVDALGNTTTYEKRLSELFPGITFTVTTKADSKFKIVGAASVAAKVTRDACIE 201
Query: 178 GWIFEETAEN----MHRNFGSGYP 197
W FEETA N ++ FGSGYP
Sbjct: 202 CWHFEETAGNDQVEWNKAFGSGYP 225
>gi|398406781|ref|XP_003854856.1| hypothetical protein MYCGRDRAFT_68089 [Zymoseptoria tritici IPO323]
gi|339474740|gb|EGP89832.1| hypothetical protein MYCGRDRAFT_68089 [Zymoseptoria tritici IPO323]
Length = 331
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 93/222 (41%), Positives = 130/222 (58%), Gaps = 19/222 (8%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLA--TLNFADSKTLKEEKREELFE----- 67
C++G+DEAGRGPVLGPMVYG Y P + ++L T F DSK L R EL E
Sbjct: 54 CVLGVDEAGRGPVLGPMVYGLYYLPLAIHRSLLADTHRFDDSKVLTPAFRSELMERICTP 113
Query: 68 DLKVNDSVGWAVDIIDPRELSAKMLNKN-KINLNEISHDSAIGLITRVLNIGILLTEVYL 126
D ++++ GWA ++ +++S+ M+ N NLN + D+ I LI VL+ G+ + EVY+
Sbjct: 114 DTDLHENSGWATRLMSAQDISSAMMRPNGTYNLNAQAMDATIDLIQEVLDSGVNIREVYI 173
Query: 127 DTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI--FEET 184
DT+G YQ KL + FP++ V+KKADSLYP VS AS+ AKVTRD L +
Sbjct: 174 DTIGQPAAYQKKLERIFPALDITVAKKADSLYPCVSAASVCAKVTRDAALDVLYSSYASA 233
Query: 185 AENMHRNFGSGYPGDHK---------HIIFGFPSLVRFSWGT 217
++ +GSGYP D + +FG+ + RFSWGT
Sbjct: 234 DDDGLIAWGSGYPSDARCSNWLKSNMDPLFGWGNECRFSWGT 275
>gi|302657829|ref|XP_003020627.1| hypothetical protein TRV_05276 [Trichophyton verrucosum HKI 0517]
gi|291184480|gb|EFE40009.1| hypothetical protein TRV_05276 [Trichophyton verrucosum HKI 0517]
Length = 361
Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 106/263 (40%), Positives = 141/263 (53%), Gaps = 39/263 (14%)
Query: 13 NPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLAT--LNFADSKTLKEEKREELFEDL- 69
PC++GIDEAGRGPVLGPMVY Y P ++L +F DSK L E R L L
Sbjct: 65 TPCVLGIDEAGRGPVLGPMVYSAFYLPIHLHKSLLADEHHFDDSKVLTPEVRSNLMRSLC 124
Query: 70 ----KVNDSVGWAVDIIDPRELSAKMLNKNK---INLNEISHDSAIGLITRVLNI-GILL 121
++DS GWAV ++ R++S+ ML + NLN + D+ I +I V+ GI +
Sbjct: 125 TQGHPLHDSCGWAVKVMSARDISSGMLRPSMAAVYNLNAQALDATIEIIRGVVETQGIDV 184
Query: 122 TEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRD-------- 173
EVY+DT+G E +QA+L + FP +K V+KKADSLYP VS AS+ AKVTRD
Sbjct: 185 KEVYVDTIGKPETHQARLLRVFPGLKITVAKKADSLYPCVSAASVCAKVTRDAALEACYE 244
Query: 174 ---------RTLRGWIFEETAENMHRNFGSGYPGDHKHI---------IFGFPSLVRFSW 215
RTL E T + +GSGYP D K + +FG+ RFSW
Sbjct: 245 SWLNQREKQRTLETGEDEATTADEILTWGSGYPSDGKCVGWLKKDMNRLFGWGVECRFSW 304
Query: 216 GTCTS--HFKDIVEVLWESDEMD 236
GT K ++V W ++E D
Sbjct: 305 GTSKELLEVKSGLKVDWPAEEDD 327
>gi|119196321|ref|XP_001248764.1| hypothetical protein CIMG_02535 [Coccidioides immitis RS]
gi|392862022|gb|EAS37377.2| ribonuclease HII [Coccidioides immitis RS]
Length = 353
Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 98/244 (40%), Positives = 137/244 (56%), Gaps = 33/244 (13%)
Query: 13 NPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLAT--LNFADSKTLKEEKREELFE--- 67
PC++G+DEAGRGPVLGPMVY Y P +L F DSK L R L
Sbjct: 67 TPCVLGVDEAGRGPVLGPMVYSAFYLPMPLHHSLLAEEHQFNDSKVLTPGIRSNLMRLLC 126
Query: 68 --DLKVNDSVGWAVDIIDPRELSAKMLNKNK--INLNEISHDSAIGLITRVLN-IGILLT 122
D +++S GWA+ ++ R++S+ M NLN + D+ + +I V+ G+ +
Sbjct: 127 TPDHPLHESCGWAIKLLSARDISSGMQRPGAAVYNLNAQAMDATVEIIRGVVEERGVDVK 186
Query: 123 EVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFE 182
EVY+DT+G+ + YQ KL + FPS+K V+KKAD+L+P VS AS+ AKVTRD L +E
Sbjct: 187 EVYIDTIGNPQTYQKKLERIFPSLKITVAKKADALFPCVSAASVCAKVTRDAALE-ICYE 245
Query: 183 ETA---------ENMHRNFGSGYPGDHK---------HIIFGFPSLVRFSWGTCTSHFKD 224
E E+M+ +GSGYP D K H +FG+ + RFSWGT KD
Sbjct: 246 ELQRQRAGMVEMEHMNNGWGSGYPSDSKCVTWLKKEMHPLFGWGNECRFSWGTA----KD 301
Query: 225 IVEV 228
++EV
Sbjct: 302 LLEV 305
>gi|410083421|ref|XP_003959288.1| hypothetical protein KAFR_0J00850 [Kazachstania africana CBS 2517]
gi|372465879|emb|CCF60153.1| hypothetical protein KAFR_0J00850 [Kazachstania africana CBS 2517]
Length = 312
Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 112/257 (43%), Positives = 149/257 (57%), Gaps = 34/257 (13%)
Query: 9 KWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQT--LATLNFADSKTLKEEKREELF 66
K +++P I+G+DEAGRGPV+GPMVYG YC +Q+ + +F DSK L +E R +LF
Sbjct: 27 KSSNSPVILGVDEAGRGPVVGPMVYGIAYCTRDFQEQVLIPDYDFDDSKKLTDEVRRKLF 86
Query: 67 ----EDLKVNDSVGWAVDIIDPRELSAKMLN---KNKINLNEISHDSAIGLITRVLNIGI 119
ED ++ND VG+A I P ++S M NLNE +HD + LI V+N G+
Sbjct: 87 RLIYEDRQIND-VGYATTCISPCDISNGMFRFPPSKNYNLNEQAHDVTMDLIQGVINQGV 145
Query: 120 LLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW 179
+ VY+DTVG YQ KL RFP IKF V+KKADSLY VVS AS+VAKVTRD +
Sbjct: 146 TIEHVYVDTVGPPNTYQKKLETRFPGIKFTVAKKADSLYCVVSVASVVAKVTRDLLVEA- 204
Query: 180 IFEETAENMHRN-------FGSGYPGD---------HKHIIFGFP-SLVRFSWGTCTSHF 222
+ E++ N+ + GSGYP D + +FG+P +VRFSW TC +
Sbjct: 205 LEEDSTINIRDHTTGEQCPVGSGYPSDPRTKVWLRQQQTPLFGWPLEMVRFSWQTCQTLL 264
Query: 223 KDI------VEVLWESD 233
D VE+ WE D
Sbjct: 265 DDNAKTGKGVEIQWEED 281
>gi|451846155|gb|EMD59466.1| hypothetical protein COCSADRAFT_30912 [Cochliobolus sativus ND90Pr]
Length = 343
Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 106/283 (37%), Positives = 149/283 (52%), Gaps = 30/283 (10%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLAT--LNFADSKTLKEEKREELFEDL--- 69
++G+DEAGRGPVLGPMVY Y P ++L +F DSK LK R +L L
Sbjct: 59 VVLGVDEAGRGPVLGPMVYALFYLPIELHRSLLAEIHHFDDSKVLKANVRSDLMRTLCTQ 118
Query: 70 --KVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLD 127
+ ++ GWA ++ +++SA ML + NLN + D+ I LI VL G+ + E+Y+D
Sbjct: 119 GTDLYEAGGWATRLLSAQDISAHMLQPSVYNLNAQAMDATIDLIKEVLAKGVNVKEIYID 178
Query: 128 TVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTL---------RG 178
T+G E YQ KL + +P+I V+KKADSLYPVVS AS+ AKVTRD L R
Sbjct: 179 TIGKPEIYQKKLERIWPTISITVAKKADSLYPVVSAASVCAKVTRDAALDVCYEPYHSRT 238
Query: 179 WIFEETAENMHRNFGSGYPGDHK---------HIIFGFPSLVRFSWGTCTSHF---KDIV 226
E + +GSGYP D + +FG+ + RFSWGT K V
Sbjct: 239 DPEAEDGAQVQAAWGSGYPSDARTSAWMKQNMDPLFGWGNETRFSWGTAKEMLEGKKADV 298
Query: 227 EVLW--ESDEMDEDVSSRRSGKRQLKLSDIGFSSSKRRSEEIE 267
+ W E D D ++ +GK + ++ KR +EE+E
Sbjct: 299 SIDWPAEDDGNDMRMTDFFNGKNEAIGDELVDWFGKRVTEEME 341
>gi|303322466|ref|XP_003071226.1| ribonuclease H2 subunit A, putative [Coccidioides posadasii C735
delta SOWgp]
gi|240110925|gb|EER29081.1| ribonuclease H2 subunit A, putative [Coccidioides posadasii C735
delta SOWgp]
gi|320040565|gb|EFW22498.1| ribonuclease HI large subunit [Coccidioides posadasii str.
Silveira]
Length = 353
Score = 165 bits (417), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 98/244 (40%), Positives = 137/244 (56%), Gaps = 33/244 (13%)
Query: 13 NPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLAT--LNFADSKTLKEEKREELFE--- 67
PC++G+DEAGRGPVLGPMVY Y P +L F DSK L R L
Sbjct: 67 TPCVLGVDEAGRGPVLGPMVYSAFYLPMPLHHSLLAEEHQFNDSKVLTPGIRSNLMRLLC 126
Query: 68 --DLKVNDSVGWAVDIIDPRELSAKMLNKNK--INLNEISHDSAIGLITRVLN-IGILLT 122
D +++S GWA+ ++ R++S+ M NLN + D+ + +I V+ G+ +
Sbjct: 127 TPDHPLHESCGWAIKLLSARDISSGMQRPGAAVYNLNAQAMDATVEIIRGVVEERGVDVK 186
Query: 123 EVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFE 182
EVY+DT+G+ + YQ KL + FPS+K V+KKAD+L+P VS AS+ AKVTRD L +E
Sbjct: 187 EVYIDTIGNPQTYQKKLERIFPSLKITVAKKADALFPCVSAASVCAKVTRDAALE-ICYE 245
Query: 183 ETA---------ENMHRNFGSGYPGDHK---------HIIFGFPSLVRFSWGTCTSHFKD 224
E E+M+ +GSGYP D K H +FG+ + RFSWGT KD
Sbjct: 246 ELQKQRAGMVEMEHMNDGWGSGYPSDSKCVTWLKKEMHPLFGWGNECRFSWGTA----KD 301
Query: 225 IVEV 228
++EV
Sbjct: 302 LLEV 305
>gi|365758681|gb|EHN00512.1| Rnh201p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii
VIN7]
Length = 307
Score = 164 bits (416), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 118/290 (40%), Positives = 156/290 (53%), Gaps = 35/290 (12%)
Query: 5 AALPKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLN--FADSKTLKEEKR 62
AAL + +P IMGIDEAGRGPV+GPMVY Y YQ + N F DSK L + R
Sbjct: 24 AALLEQNDSPVIMGIDEAGRGPVMGPMVYAAAYSTREYQDEIVIPNYEFDDSKKLTDPVR 83
Query: 63 EELF----EDLKVNDSVGWAVDIIDPRELS---AKMLNKNKINLNEISHDSAIGLITRVL 115
+LF ED + +G+A I P ++S +K NLNE +HD + LI V
Sbjct: 84 RKLFAKMYEDNEELTQIGYATTCITPLDISRGMSKFPPTRNYNLNEQAHDVTMALIDGVT 143
Query: 116 NIGILLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRT 175
+ L VY+DTVG YQ KL QRFP IKF V+KKADSLY +VS AS+VAKVTRD
Sbjct: 144 KQNVKLDHVYVDTVGPPMSYQKKLEQRFPDIKFTVAKKADSLYCMVSVASVVAKVTRD-- 201
Query: 176 LRGWIFEETAENMHRNFGSGYPGDHKHI---------IFGFPS-LVRFSWGTCTSHFKDI 225
+ E + GSGYP D K + + G+P+ +VRFSW TC + D
Sbjct: 202 ---ILVESLKRDPDEVIGSGYPSDPKTVAWLKRNQTGLMGWPTDMVRFSWQTCQTLLDDP 258
Query: 226 ----VEVLWESDEMDEDVSSRRSG---KRQLKLSDIGFSSSKRRSEEIES 268
V + WE MD SR++ RQL+L + S+ ++R +++
Sbjct: 259 TRHSVIIKWEEQYMD----SRKNAAQKTRQLQLQMVAKSARRKRLRTLDN 304
>gi|302308334|ref|NP_985219.2| AER363Wp [Ashbya gossypii ATCC 10895]
gi|299789405|gb|AAS53043.2| AER363Wp [Ashbya gossypii ATCC 10895]
gi|374108444|gb|AEY97351.1| FAER363Wp [Ashbya gossypii FDAG1]
Length = 304
Score = 164 bits (415), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 106/238 (44%), Positives = 140/238 (58%), Gaps = 23/238 (9%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLN-FADSKTLKEEKREELFEDLKVND- 73
I+G+DEAGRGPVLGPMVY YC SY+ T+ + F DSK L + R LF + +
Sbjct: 37 ILGVDEAGRGPVLGPMVYAVAYCTVSYEATIVRQHGFDDSKKLTDAVRRTLFGKICAAEL 96
Query: 74 -SVGWAVDIIDPRELSAKMLN---KNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 129
+G+A + P +S+ ML NLNE +HD+ I LI VL+ G+ + VY+DTV
Sbjct: 97 AGIGFATTGLSPAAISSGMLRYPPTKNYNLNEQAHDTTIALIQGVLDAGVRVEHVYVDTV 156
Query: 130 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH 189
G YQAKL QRFP+ K V+KKADS +PVVS AS+VAKVTRD L T +++
Sbjct: 157 GPPLAYQAKLQQRFPACKITVAKKADSTFPVVSVASVVAKVTRDVWLHA--LRPTPDDV- 213
Query: 190 RNFGSGYPGDHKHI---------IFGF-PSLVRFSWGTCTSHFKD--IVEVLWESDEM 235
GSGYPGD K + +FG+ P LVRFSW TC + + + + WE D +
Sbjct: 214 --LGSGYPGDQKTVAWLHRECRPLFGWSPELVRFSWQTCRTLLESDKAIRIEWEEDSL 269
>gi|326472233|gb|EGD96242.1| ribonuclease H2 subunit A [Trichophyton tonsurans CBS 112818]
Length = 361
Score = 164 bits (415), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 105/264 (39%), Positives = 143/264 (54%), Gaps = 41/264 (15%)
Query: 13 NPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLAT--LNFADSKTLKEEKREELFEDL- 69
PC++GIDEAGRGPVLGPMVY Y P ++L +F DSK L E R L L
Sbjct: 65 TPCVLGIDEAGRGPVLGPMVYSAFYLPIHLHKSLLADEHHFDDSKVLTPEVRSNLMRSLC 124
Query: 70 ----KVNDSVGWAVDIIDPRELSAKMLNKNK---INLNEISHDSAIGLITRVLNIG-ILL 121
++DS GWAV ++ R++S+ ML + NLN + D+ I +I V+ I +
Sbjct: 125 TKGHPLHDSCGWAVKVMSARDISSGMLRPSMAAVYNLNSQALDATIEIIRGVVETQRIDV 184
Query: 122 TEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRG--- 178
EVY+DT+G E +QA+L + FP +K V+KKADSLYP VS AS+ AKVTRD L
Sbjct: 185 KEVYVDTIGKPETHQARLLRVFPGLKITVAKKADSLYPCVSAASVCAKVTRDAALEACYE 244
Query: 179 -WIFEE--------------TAENMHRNFGSGYPGDHKHI---------IFGFPSLVRFS 214
W+ + TAE + +GSGYP D K + +FG+ + RFS
Sbjct: 245 SWLNQREKQKTLATGEDKTATAEEI-LTWGSGYPSDGKCVGWLKKDMNRLFGWGAECRFS 303
Query: 215 WGTCTS--HFKDIVEVLWESDEMD 236
WGT K ++V W ++E D
Sbjct: 304 WGTSKELLEVKSGLKVDWPAEEDD 327
>gi|452846013|gb|EME47946.1| hypothetical protein DOTSEDRAFT_167397 [Dothistroma septosporum
NZE10]
Length = 332
Score = 164 bits (414), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 104/275 (37%), Positives = 148/275 (53%), Gaps = 29/275 (10%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLA--TLNFADSKTLKEEKREELFEDLKVN 72
C++G+DEAGRGPVLGPMVY Y P + + L T F DSK L R EL E +
Sbjct: 55 CVLGVDEAGRGPVLGPMVYALYYLPLTMHRKLLADTHKFDDSKVLTPAVRSELMEKISTP 114
Query: 73 DSV-----GWAVDIIDPRELSAKMLNKNKI-NLNEISHDSAIGLITRVLNIGILLTEVYL 126
+ GWA + R++S+ M+ + + NLNE + D+ I LI VLN G+ + EVY+
Sbjct: 115 GTDLYTHGGWAARHMSARDISSAMMRPHGMYNLNEQAMDATIDLIQEVLNSGVNIREVYI 174
Query: 127 DTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTL----RGWIFE 182
DT+G E YQ KL + FP++ V+KKADSLYP VS AS+ AKVTRD L + E
Sbjct: 175 DTIGRPETYQRKLERIFPALSITVAKKADSLYPCVSAASVCAKVTRDAALDVLYTSYATE 234
Query: 183 ETAENMHRNFGSGYPGD---------HKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWESD 233
E + + +GSGYP D + + ++G+ + RFSWGT K+++E +
Sbjct: 235 EDSGEV--AWGSGYPSDVRCSNWLKANMNPMYGWGNECRFSWGTA----KEMLEA--KGA 286
Query: 234 EMDEDVSSRRSGKRQLKLSDIGFSSSKRRSEEIES 268
D G LKL+ + R +E+ +
Sbjct: 287 PCRVDWPEPDDGTDNLKLTGFLMGAGDEREDELTT 321
>gi|346972898|gb|EGY16350.1| ribonuclease H2 subunit A [Verticillium dahliae VdLs.17]
Length = 351
Score = 164 bits (414), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 107/266 (40%), Positives = 143/266 (53%), Gaps = 35/266 (13%)
Query: 5 AALPKWAS--NPCI-MGIDEAGRGPVLGPMVYGCLYCPCSYQQTL--ATLNFADSKTLKE 59
+A+P+ A+ +P + +GIDEAGRGPVLGPM Y Y P L T +F DSK L
Sbjct: 56 SAVPELAAADSPAVCLGIDEAGRGPVLGPMTYAAFYLPMPLSDPLLRETHHFDDSKVLTP 115
Query: 60 EKREELFEDL-----KVNDSVGWAVDIIDPRELSAKMLN-KNKINLNEISHDSAIGLITR 113
R L L + S G+AV + R++++ ML+ N NLN + D+ + +I
Sbjct: 116 AVRSALMRALCSPSTDLAASCGYAVRSLSARDIASGMLSTANPYNLNAQAFDATVEIIKG 175
Query: 114 VLNIGILLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRD 173
V+ G+ + E+Y+DTVG YQAKL + FPS+K V+KKADSLYP VS AS+ AKVTRD
Sbjct: 176 VIARGVRVEEIYVDTVGQPAAYQAKLQRVFPSVKITVAKKADSLYPCVSAASVCAKVTRD 235
Query: 174 RTLR-----------GWIFEETAENMHRNFGSGYPGDHK---------HIIFGFPSLVRF 213
L G E E M +GSGYP D + H +FG+ S RF
Sbjct: 236 AALEVMYEAHKAANGGHAGTEDGEGMA--WGSGYPSDARCVSWLRGNMHPVFGWGSECRF 293
Query: 214 SWGTCTSHF--KDIVEVLWESDEMDE 237
SWGT K V+V W DE ++
Sbjct: 294 SWGTAKDMLDGKGGVKVDWPVDETED 319
>gi|307103270|gb|EFN51532.1| hypothetical protein CHLNCDRAFT_140248 [Chlorella variabilis]
Length = 259
Score = 163 bits (412), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 105/279 (37%), Positives = 143/279 (51%), Gaps = 50/279 (17%)
Query: 31 MVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS-VGWAVDIIDPRELSA 89
MVYG + P S ++ L + FADSKTL EEKR+ LF ++ +G+ D++ +S
Sbjct: 1 MVYGLAWAPISRRKDLKAMGFADSKTLTEEKRDHLFGVIQAEGGMLGYQADVLSAAFISG 60
Query: 90 KMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQAKLSQRFPSIKFV 149
KML + +++LN ++ +S LI VL G +LSQRFP ++FV
Sbjct: 61 KMLGRERVSLNALAFESTCALIEAVLARG------------------ERLSQRFPGVQFV 102
Query: 150 VSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAEN--------------MHRNFGSG 195
V KADS YP+VS ASIVAKVTRDRTLR ++ E A + + FGSG
Sbjct: 103 VEAKADSTYPIVSAASIVAKVTRDRTLRDFVLGEMAASLDGGSSSSDGCAAALSTQFGSG 162
Query: 196 YPGDHK---------HIIFGFPSLVRFSWGTCTSHF-KDIVEVLWESDEMDEDVSSRRSG 245
YP D + + +FGFPSLVRFSW TCT + + +E D D +G
Sbjct: 163 YPADPQTKRWLEASINRVFGFPSLVRFSWSTCTPLLEQHAATITFERDAEDG------AG 216
Query: 246 KRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQ 284
Q LS G + SSG GR + ARKL++
Sbjct: 217 TGQQVLS-FGGCALPAGGMAAASSGLGRHSYFMARKLQR 254
>gi|225684872|gb|EEH23156.1| ribonuclease H2 subunit A [Paracoccidioides brasiliensis Pb03]
Length = 343
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 106/256 (41%), Positives = 141/256 (55%), Gaps = 34/256 (13%)
Query: 13 NPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLAT--LNFADSKTLKEEKREELFE--- 67
PC++G+DEAGRGPVLGPMVY Y P S +L +F DSK L R L
Sbjct: 55 TPCVLGVDEAGRGPVLGPMVYSAFYLPLSLHHSLLAEEHHFDDSKVLTPAVRTNLMRLLC 114
Query: 68 --DLKVNDSVGWAVDIIDPRELSAKML--NKNKINLNEISHDSAIGLITRVL-NIGILLT 122
D +N S GW V ++ R++S ML NLN + D+ I LI ++ +G+ +
Sbjct: 115 TPDHSLNTSCGWGVKVMSARDISTGMLRSGTGNYNLNAQAMDATIELIICIVEKMGVNVK 174
Query: 123 EVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTL------ 176
EVY+DTVG+ E YQ KL + FP++K V+KKADSLYP VS AS+ AKVTRD L
Sbjct: 175 EVYIDTVGNPETYQKKLKRIFPALKITVTKKADSLYPSVSAASVCAKVTRDVALELCYEA 234
Query: 177 ----RGWIFEETAENMHRNFGSGYPGDHKHI---------IFGFPSLVRFSWGTCTSHFK 223
RG + +E A + +GSGYP D K + +FG+ + RFSWGT +
Sbjct: 235 LVKQRGAMEQEGAAD---GWGSGYPSDSKCVGWLKNDMDSLFGWGNECRFSWGTARELLE 291
Query: 224 DI--VEVLWESDEMDE 237
++V W DE DE
Sbjct: 292 SNRGIKVDWPVDEDDE 307
>gi|326483287|gb|EGE07297.1| ribonuclease HI large subunit [Trichophyton equinum CBS 127.97]
Length = 323
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 103/254 (40%), Positives = 140/254 (55%), Gaps = 43/254 (16%)
Query: 13 NPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLAT--LNFADSKTLKEEKREELFEDL- 69
PC++GIDEAGRGPVLGPMVY Y P ++L +F DSK L E R L L
Sbjct: 65 TPCVLGIDEAGRGPVLGPMVYSAFYLPIHLHKSLLADEHHFDDSKVLTPEVRSNLMRSLC 124
Query: 70 ----KVNDSVGWAVDIIDPRELSAKMLNKNKI---NLNEISHDSAIGLITRVLNIG-ILL 121
++DS GWAV ++ R++S+ ML + NLN + D+ I +I V+ I +
Sbjct: 125 TKGHPLHDSCGWAVKVMSARDISSGMLRPSMAAVYNLNSQALDATIEIIRGVVETQRIDV 184
Query: 122 TEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRG--- 178
EVY+DT+G E +QA+L + FP +K V+KKADSLYP VS AS+ AKVTRD L
Sbjct: 185 KEVYVDTIGKPETHQARLLRVFPGLKITVAKKADSLYPCVSAASVCAKVTRDAALEACYE 244
Query: 179 -WIFEE--------------TAENMHRNFGSGYPGDHKHI---------IFGFPSLVRFS 214
W+ + TAE + +GSGYP D K + +FG+ + RFS
Sbjct: 245 SWLNQREKQKTLATGEDKTATAEEI-LTWGSGYPSDGKCVGWLKKDMNRLFGWGAECRFS 303
Query: 215 WGTCTSHFKDIVEV 228
WGT K+++EV
Sbjct: 304 WGTS----KELLEV 313
>gi|341039044|gb|EGS24036.1| hypothetical protein CTHT_0007470 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 363
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 99/256 (38%), Positives = 136/256 (53%), Gaps = 47/256 (18%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLA--TLNFADSKTLKEEKREELFEDL-- 69
PC++G+DEAGRGPVLGPMVYG + P +L T +F DSK L R L + L
Sbjct: 62 PCVLGVDEAGRGPVLGPMVYGIFFLPLDLSDSLLRDTHHFDDSKVLTPATRSALMQTLCT 121
Query: 70 ---KVNDSVGWAVDIIDPRELSAKMLNKNKI--NLNEISHDSAIGLITRVLNIGILLTEV 124
++ S GWA+ + R++S+ ML + NLN + D+ + LI +V G+ +TE+
Sbjct: 122 EGSDLHTSCGWAITALSARDISSGMLRPSTAGYNLNAQAQDATVALIKKVYASGVNVTEI 181
Query: 125 YLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEET 184
Y+DT+G YQAKL + FP +K V+KKADSLYP VS AS+ AKVTRD L + E
Sbjct: 182 YVDTIGHPATYQAKLERVFPGVKITVAKKADSLYPCVSAASVCAKVTRDAALE--VLWEA 239
Query: 185 AENMHRN-----------------------FGSGYPGDHK---------HIIFGFPSLVR 212
A+ R +GSGYP D + H ++G+ R
Sbjct: 240 AKGRGRTPKGEDEMDVGEKRGESEESEGMAWGSGYPSDARCVSWLKANMHPVWGWGPECR 299
Query: 213 FSWGTCTSHFKDIVEV 228
FSWGT KD++E
Sbjct: 300 FSWGTA----KDMLEA 311
>gi|401623866|gb|EJS41947.1| rnh201p [Saccharomyces arboricola H-6]
Length = 307
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 112/283 (39%), Positives = 149/283 (52%), Gaps = 32/283 (11%)
Query: 9 KWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLN--FADSKTLKEEKREELF 66
K+ +P IMGIDEAGRGPV+GPMVY Y YQ N F DSK L + R +LF
Sbjct: 28 KYNDSPVIMGIDEAGRGPVMGPMVYAVAYSTQKYQDETVIPNYEFDDSKKLTDPIRRKLF 87
Query: 67 EDLKVND----SVGWAVDIIDPRELS---AKMLNKNKINLNEISHDSAIGLITRVLNIGI 119
+ ++ +G+A I P ++S +K NLNE +HD + LI VL +
Sbjct: 88 AKMYEHNEELTQIGYATTCITPLDISRGMSKFPPTRNYNLNEQAHDVTMALIDGVLKQDV 147
Query: 120 LLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW 179
L VY+DTVG YQ KL QRFP KF V+KKADSLY +VS AS+VAKVTRD
Sbjct: 148 KLDHVYVDTVGPPASYQKKLEQRFPDTKFTVAKKADSLYCMVSVASVVAKVTRD-----I 202
Query: 180 IFEETAENMHRNFGSGYPGDHKHI---------IFGFPS-LVRFSWGTCTSHF----KDI 225
+ E N GSGYP D K + + G+P+ +VRFSW TC + KD
Sbjct: 203 LVESLKRNPDEVLGSGYPSDPKTVAWLKNNQTSLMGWPANMVRFSWQTCQTLLDNTTKDN 262
Query: 226 VEVLWESDEMDEDVSSRRSGKRQLKLSDIGFSSSKRRSEEIES 268
V + WE MD SR++ ++ K + + R + + +
Sbjct: 263 VLIKWEEQYMD----SRKNAAQKTKQLQLQMVTKPARGKRLRT 301
>gi|148665343|gb|EDK97759.1| phosphatidylinositol glycan anchor biosynthesis, class Z [Mus
musculus]
Length = 799
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 87/209 (41%), Positives = 117/209 (55%), Gaps = 28/209 (13%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVN- 72
PC++G+DEAGR PVLGPMVY YCP S L ADSKTL E +RE LF ++ +
Sbjct: 28 PCVLGVDEAGRAPVLGPMVYAICYCPLSRLADPEALKVADSKTLTENERERLFTKMEEDG 87
Query: 73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
D VGW++D++ P +S ML + K NLN +SHD+A LI +A
Sbjct: 88 DFVGWSLDVLSPNLISISMLGRVKYNLNSLSHDTAAELI------------------WNA 129
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF 192
+ I+ V KADSL+PVVS ASI AKVTRD+ ++ W F E +++ ++
Sbjct: 130 RDIPGSIITALSGIEVTVKAKADSLFPVVSAASIFAKVTRDKAVKNWQFVEILQDLDSDY 189
Query: 193 GSGYPGDHK-------HI--IFGFPSLVR 212
GSGYP D K H+ +FGFP +
Sbjct: 190 GSGYPSDPKTKAWLRRHVDPVFGFPQFAQ 218
>gi|310794509|gb|EFQ29970.1| ribonuclease HII [Glomerella graminicola M1.001]
Length = 344
Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 103/272 (37%), Positives = 143/272 (52%), Gaps = 29/272 (10%)
Query: 11 ASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTL--ATLNFADSKTLKEEKREELFED 68
+ P +G+DEAGRGPVLGPMVYG Y P L T +F DSK L R +L
Sbjct: 63 SGTPVCLGVDEAGRGPVLGPMVYGVFYLPIPLSDPLLRETHHFDDSKVLTPAVRSQLMAA 122
Query: 69 L-----KVNDSVGWAVDIIDPRELSAKMLNKN-KINLNEISHDSAIGLITRVLNIGILLT 122
L + +S G+A+ + R++S+ M+ NLN + D+ + LI V G+ +
Sbjct: 123 LCTAGSDLAESCGFAISALSARDISSGMMRPGANYNLNAQAMDATVELIKGVFAQGVNIQ 182
Query: 123 EVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFE 182
E+Y+DTVG YQAKL + FP+ K V+KKADSLYP VS AS+ AKVTRD L
Sbjct: 183 EIYVDTVGQPAAYQAKLQRFFPATKITVAKKADSLYPCVSAASVCAKVTRDAALEVLYKA 242
Query: 183 ETAENMHRN---FGSGYPGDHK---------HIIFGFPSLVRFSWGTCTSHF--KDIVEV 228
E++ +GSGYP D + H +FG+ RFSWGT K ++V
Sbjct: 243 RAPESVVEEGMAWGSGYPSDGRCVSWMKSNMHPVFGWGPECRFSWGTAKDMLEGKGGLKV 302
Query: 229 LWESDEMDEDVSSRR-----SGKRQLKLSDIG 255
W + D+D ++R SG R+ ++G
Sbjct: 303 DWPVE--DDDDTARMTDFFISGDREQDGDELG 332
>gi|167394469|ref|XP_001740978.1| ribonuclease H2 subunit A [Entamoeba dispar SAW760]
gi|165894666|gb|EDR22579.1| ribonuclease H2 subunit A, putative [Entamoeba dispar SAW760]
Length = 270
Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 103/258 (39%), Positives = 138/258 (53%), Gaps = 31/258 (12%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVG 76
+GIDEAGRGPVLGPMVY + + + ++T+ F DSK L RE+LF D+K + G
Sbjct: 17 IGIDEAGRGPVLGPMVYSAFFT--TNTEIISTMGFHDSKILSRTMREKLFSDIKESAVCG 74
Query: 77 WAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGIL-LTEVYLDTVGDAEKY 135
++ I+ P +S M K++LNEI+ + +I +++ I + +Y DTVG + KY
Sbjct: 75 FSTRILTPSYISHLMCGPQKVSLNEIAFGAVRDIIHQIIRINQRKIVHIYCDTVGPSGKY 134
Query: 136 QAKLSQRFPSIKF---VVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH-RN 191
Q ++ F IK V KAD LYPVVS ASI AKVTRD L WI+EE N+ R
Sbjct: 135 QMMIANEFKDIKLNQITVCPKADGLYPVVSAASICAKVTRDTCLDNWIYEE--RNIQTRK 192
Query: 192 FGSGYPGDHKHI---------IFGFPSLVRFSWGTCTSHFKDIVEVLWESDEMDEDVSSR 242
G GYP D I +FG+P+LVRF W T K I+E E V +
Sbjct: 193 VGCGYPSDIDTIKWMKCQYDPLFGYPNLVRFGWETS----KRIIE---------EKVPMK 239
Query: 243 RSGKRQLKLSDIGFSSSK 260
R Q K +G SK
Sbjct: 240 RPFPYQNKQDVVGVIQSK 257
>gi|323335818|gb|EGA77097.1| Rnh201p [Saccharomyces cerevisiae Vin13]
gi|365763336|gb|EHN04865.1| Rnh201p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii
VIN7]
Length = 307
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 111/281 (39%), Positives = 151/281 (53%), Gaps = 29/281 (10%)
Query: 5 AALPKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQ--TLATLNFADSKTLKEEKR 62
+AL + +P IMGIDEAGRGPVLGPMVY Y YQ + F DSK L + R
Sbjct: 24 SALLEQNDSPIIMGIDEAGRGPVLGPMVYAVAYSTQKYQDETIIPNYEFDDSKKLTDPIR 83
Query: 63 EELFEDLKVND----SVGWAVDIIDPRELS---AKMLNKNKINLNEISHDSAIGLITRVL 115
LF + ++ +G+A I P ++S +K NLNE +HD + LI V+
Sbjct: 84 RMLFSKIYQDNEELTQIGYATTCITPLDISRGMSKFPPTRNYNLNEQAHDVTMALIDGVI 143
Query: 116 NIGILLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRT 175
+ L+ VY+DTVG YQ KL QRFP +KF V+KKADSLY +VS AS+VAKVTRD
Sbjct: 144 KQNVKLSHVYVDTVGPPASYQKKLEQRFPGVKFTVAKKADSLYCMVSVASVVAKVTRD-- 201
Query: 176 LRGWIFEETAENMHRNFGSGYPGDHKHI---------IFGFPS-LVRFSWGTCTSHF--- 222
+ E + GSGYP D K + + G+P+ +VRFSW TC +
Sbjct: 202 ---ILVESLKRDPDEILGSGYPSDPKTVAWLKRNQTSLMGWPANMVRFSWQTCQTLLDDA 258
Query: 223 -KDIVEVLWESDEMDEDVSSRRSGKRQLKLSDIGFSSSKRR 262
KD + + WE MD ++ + K QL+L + ++R
Sbjct: 259 SKDSIPIKWEEQYMDSRKNAAQKTK-QLQLQMVAKPVRRKR 298
>gi|367034558|ref|XP_003666561.1| hypothetical protein MYCTH_2311349 [Myceliophthora thermophila ATCC
42464]
gi|347013834|gb|AEO61316.1| hypothetical protein MYCTH_2311349 [Myceliophthora thermophila ATCC
42464]
Length = 381
Score = 161 bits (407), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 109/293 (37%), Positives = 139/293 (47%), Gaps = 73/293 (24%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTL--ATLNFADSKTLKEEKREELFEDL-- 69
PC +G+DEAGRGPVLGPMVYG Y P L AT +F DSK L R L L
Sbjct: 60 PCALGVDEAGRGPVLGPMVYGVFYLPIPLSDPLLRATHHFDDSKVLTPAVRASLLRTLCT 119
Query: 70 ---KVNDSVGWAVDIIDPRELSAKMLNKN--KINLNEISHDSAIGLITRVLNIGILLTEV 124
++ S GWAV + R++SA ML NLN + D+ + LI +V G+ + E+
Sbjct: 120 PSTDLHASCGWAVTALSARDISAGMLRPGLAAYNLNAQAMDATVELIRQVYARGVNVREI 179
Query: 125 YLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLR------G 178
Y+DT+G YQAKL + FP+ K V+KKADSLYP VS AS+ AKVTRD L G
Sbjct: 180 YVDTIGQPAAYQAKLERVFPTAKITVAKKADSLYPCVSAASVCAKVTRDVALETLWKAPG 239
Query: 179 W-----------------------------------IFEETAENMHRNFGSGYPGDHK-- 201
W +E A +GSGYP D +
Sbjct: 240 WKAGQVVGGGEEGEEKDGVEEEKEEERKEDEQQDQEEEQEQAGEASMAWGSGYPSDRRCV 299
Query: 202 -------HIIFGFPSLVRFSWGTCTSHFKDIVE----------VLWESDEMDE 237
H +FG+ RFSWGT KDI+E V W ++E D+
Sbjct: 300 AWLKASMHPLFGWGPECRFSWGTA----KDILEAAPAKGGGVKVDWPANEDDD 348
>gi|323346904|gb|EGA81183.1| Rnh201p [Saccharomyces cerevisiae Lalvin QA23]
Length = 307
Score = 161 bits (407), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 111/287 (38%), Positives = 154/287 (53%), Gaps = 29/287 (10%)
Query: 5 AALPKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQ--TLATLNFADSKTLKEEKR 62
+AL + +P IMGIDEAGRGPVLGPMVY Y YQ + F DSK L + R
Sbjct: 24 SALLEQNDSPIIMGIDEAGRGPVLGPMVYAVAYSTQKYQDETIIPNYEFDDSKKLTDPIR 83
Query: 63 EELFEDLKVND----SVGWAVDIIDPRELS---AKMLNKNKINLNEISHDSAIGLITRVL 115
LF + ++ +G+A I P ++S +K NLNE +HD + LI V+
Sbjct: 84 RMLFSKIYQDNEELTQIGYATTCITPLDISRGMSKFPPTRNYNLNEQAHDVTMALIDGVI 143
Query: 116 NIGILLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRT 175
+ L+ VY+DTVG YQ KL QRFP +KF V+KKADSLY +VS AS+VAKVTRD
Sbjct: 144 KQNVKLSHVYVDTVGPPASYQKKLEQRFPGVKFTVAKKADSLYCMVSVASVVAKVTRD-- 201
Query: 176 LRGWIFEETAENMHRNFGSGYPGDHKHI---------IFGFPS-LVRFSWGTCTSHF--- 222
+ E + GSGYP D K + + G+P+ +VRFSW TC +
Sbjct: 202 ---ILVESLKRDPDEILGSGYPSDPKTVAWLKRNQTSLMGWPANMVRFSWQTCQTLLDDA 258
Query: 223 -KDIVEVLWESDEMDEDVSSRRSGKRQLKLSDIGFSSSKRRSEEIES 268
KD + + WE MD ++ + K QL+L + ++R +++
Sbjct: 259 SKDSIXIKWEEQYMDSRKNAAQKTK-QLQLQMVAKPVRRKRLRTLDN 304
>gi|401840962|gb|EJT43568.1| RNH201-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 307
Score = 161 bits (407), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 117/290 (40%), Positives = 155/290 (53%), Gaps = 35/290 (12%)
Query: 5 AALPKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLN--FADSKTLKEEKR 62
AAL + +P IMGIDEAGRGPV+GPMVY Y YQ + N F DSK L + R
Sbjct: 24 AALLEQNDSPVIMGIDEAGRGPVMGPMVYAVAYSTREYQDDIVIPNYEFDDSKKLTDPVR 83
Query: 63 EELF----EDLKVNDSVGWAVDIIDPRELS---AKMLNKNKINLNEISHDSAIGLITRVL 115
+LF ED + +G+A I P ++S +K NLNE +HD + LI V
Sbjct: 84 RKLFAKMYEDNEELTQIGYATTCITPLDISRGMSKFPPTRNYNLNEQAHDVTMALIDGVT 143
Query: 116 NIGILLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRT 175
+ L VY+DTVG YQ KL QRFP IKF V+KKADSLY +VS AS+VAKVTRD
Sbjct: 144 KQNVKLDHVYVDTVGPPTSYQKKLEQRFPDIKFTVAKKADSLYCMVSVASVVAKVTRD-- 201
Query: 176 LRGWIFEETAENMHRNFGSGYPGDHKHI---------IFGFPS-LVRFSWGTCTSHFKDI 225
+ E + GSGYP D K + + G+ + +VRFSW TC + D
Sbjct: 202 ---ILVESLKRDPDEVIGSGYPSDPKTVAWLKRNQTSLMGWTTDMVRFSWQTCQTLLDDP 258
Query: 226 ----VEVLWESDEMDEDVSSRRSG---KRQLKLSDIGFSSSKRRSEEIES 268
V + WE MD SR++ RQL+L + S+ ++R +++
Sbjct: 259 TRHSVIIKWEEQYMD----SRKNAAQKTRQLQLQMVAKSARRKRLRTLDN 304
>gi|400597529|gb|EJP65259.1| ribonuclease HII [Beauveria bassiana ARSEF 2860]
Length = 340
Score = 161 bits (407), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 96/246 (39%), Positives = 133/246 (54%), Gaps = 33/246 (13%)
Query: 11 ASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTL--ATLNFADSKTLKEEKREELFED 68
++ PC +G+DEAGRGPVLGPMVYG Y P + L + +F DSK L R L E
Sbjct: 53 SATPCCLGVDEAGRGPVLGPMVYGVFYLPIAQSDPLLRSAHHFDDSKVLTAAVRASLMEA 112
Query: 69 L-----KVNDSVGWAVDIIDPRELSAKMLNKNKI-NLNEISHDSAIGLITRVLNIGILLT 122
L ++DS GWA + R++ A ML + NLN + D+ + LI V G+ +
Sbjct: 113 LCRPGSDLHDSCGWATTALSARDIGANMLKPVGVYNLNAQAMDATVDLIKGVYARGVNVQ 172
Query: 123 EVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFE 182
E+Y+DT+G YQAKL + FP+ K V+KKADSLY VS AS+ AKVTRD L ++
Sbjct: 173 EIYVDTIGPPATYQAKLQRIFPTAKVTVAKKADSLYACVSAASVCAKVTRDVALEA-VYR 231
Query: 183 ETAENMHRN-----------FGSGYPGDHK---------HIIFGFPSLVRFSWGTCTSHF 222
+ ++ + +GSGYP D + H +FG+ RFSW T
Sbjct: 232 DRKDHPADHEEIDDDDTAMAWGSGYPSDARCTAWMRSNLHPVFGWGPECRFSWSTA---- 287
Query: 223 KDIVEV 228
KD++E
Sbjct: 288 KDMLEA 293
>gi|295658160|ref|XP_002789642.1| ribonuclease H2 subunit A [Paracoccidioides sp. 'lutzii' Pb01]
gi|226283127|gb|EEH38693.1| ribonuclease H2 subunit A [Paracoccidioides sp. 'lutzii' Pb01]
Length = 343
Score = 161 bits (407), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 104/256 (40%), Positives = 141/256 (55%), Gaps = 34/256 (13%)
Query: 13 NPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLAT--LNFADSKTLKEEKREELFE--- 67
PC++G+DEAGRGPVLGPM+Y Y P S +L +F DSK L R L
Sbjct: 55 TPCVLGVDEAGRGPVLGPMIYSAFYLPLSLHHSLLAKEHHFDDSKVLTPAVRTNLMRLLC 114
Query: 68 --DLKVNDSVGWAVDIIDPRELSAKML--NKNKINLNEISHDSAIGLITRVL-NIGILLT 122
D +N S GW V ++ R++S ML NLN + D+ I LI ++ +G+ +
Sbjct: 115 TPDHSLNTSCGWGVKVLSARDISTGMLRSGTGNYNLNAQAMDATIELIICIVEKMGVNVK 174
Query: 123 EVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTL------ 176
EVY+DT+G+ E YQ KL + FP++K V+KKADSLYP VS AS+ AKVTRD L
Sbjct: 175 EVYIDTIGNPETYQKKLKRIFPALKITVTKKADSLYPSVSAASVCAKVTRDVALELCYEA 234
Query: 177 ----RGWIFEETAENMHRNFGSGYPGDHKHI---------IFGFPSLVRFSWGTCTSHF- 222
RG + +E A + +GSGYP D K + +FG+ + RFSWGT
Sbjct: 235 LVKQRGAMEQEGAAD---GWGSGYPSDSKCVGWLKNDMDSLFGWGNECRFSWGTARELLE 291
Query: 223 -KDIVEVLWESDEMDE 237
K ++V W DE +E
Sbjct: 292 SKRGIKVDWPVDEDNE 307
>gi|367012081|ref|XP_003680541.1| hypothetical protein TDEL_0C04410 [Torulaspora delbrueckii]
gi|359748200|emb|CCE91330.1| hypothetical protein TDEL_0C04410 [Torulaspora delbrueckii]
Length = 299
Score = 161 bits (407), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 105/226 (46%), Positives = 133/226 (58%), Gaps = 22/226 (9%)
Query: 12 SNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFA--DSKTLKEEKREELFEDL 69
S+ I+G+DEAGRGPV+GPMVYG +C YQ T+ +A DSK L + R +LF +
Sbjct: 31 SSSVILGVDEAGRGPVMGPMVYGISFCTREYQDTVLIPKYAFDDSKKLTDPVRRDLFSKI 90
Query: 70 KVND--SVGWAVDIIDPRELSAKMLN---KNKINLNEISHDSAIGLITRVLNIGILLTEV 124
N+ VG+A I P ++S M NLNE +HD + LI VL+ G+ L V
Sbjct: 91 YNNEITGVGYATTCITPVDISGGMFRFPPSKNYNLNEQAHDVTMKLIQGVLDRGVKLDHV 150
Query: 125 YLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEET 184
Y+DTVG YQ KL QRFPS+KF V+KKADSLY VVS AS+VAKVTRD I + +
Sbjct: 151 YVDTVGQPASYQKKLEQRFPSVKFTVAKKADSLYCVVSVASVVAKVTRDI-----IVDLS 205
Query: 185 AENMHRNFGSGYPGDHKHI---------IFGFP-SLVRFSWGTCTS 220
N GSGYP D K +FG+P +VRFSW TC +
Sbjct: 206 RRNPEEIIGSGYPSDPKTTAWLRSNQSPLFGWPHEMVRFSWQTCQT 251
>gi|322699282|gb|EFY91045.1| Ribonuclease H2 subunit A [Metarhizium acridum CQMa 102]
Length = 337
Score = 161 bits (407), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 104/279 (37%), Positives = 141/279 (50%), Gaps = 34/279 (12%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLA--TLNFADSKTLKEEKREELF----- 66
P +G+DEAGRGPVLGPMVYG Y P L T +F DSK L R L
Sbjct: 54 PLCLGVDEAGRGPVLGPMVYGIFYLPLPQSGPLLRDTHHFDDSKALTAAARSSLMRALCT 113
Query: 67 EDLKVNDSVGWAVDIIDPRELSAKMLNKNKI-NLNEISHDSAIGLITRVLNIGILLTEVY 125
E ++ GWA + R++SA ML + NLN + D+ + LI L G+ + EVY
Sbjct: 114 EGTDLHAQCGWATAALSARDISAGMLRPAGVYNLNAQAVDATVALIRGALKRGLNIREVY 173
Query: 126 LDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI----- 180
+DTVG +QA+L + FP+ K V+KKADSLYP VS AS+ AKVTRD L
Sbjct: 174 VDTVGQPAAHQARLQRVFPTTKITVAKKADSLYPCVSAASVCAKVTRDAALEALYGARRD 233
Query: 181 ----FEETAENMHRNFGSGYPGDHK---------HIIFGFPSLVRFSWGTCTSHFKDIVE 227
E A M +GSGYP D + H +FG+ RFSWGT KD++E
Sbjct: 234 GDGDGEGAAAGM--EWGSGYPSDARCVGWLRRNMHPVFGWGPECRFSWGTA----KDMLE 287
Query: 228 VLWESDEMDEDVSSRRSGKRQLKLSDIGFSSSKRRSEEI 266
++D V G ++++D + ++E+
Sbjct: 288 TKGGGVKVDWPV--EEEGGDSMRVTDFFVAGRGEETDEL 324
>gi|154288434|ref|XP_001545012.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150408653|gb|EDN04194.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 341
Score = 160 bits (406), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 103/253 (40%), Positives = 135/253 (53%), Gaps = 28/253 (11%)
Query: 13 NPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLAT--LNFADSKTLKEEKREELFEDLK 70
PC++G+DEAGRGPVLGPMVY Y P +L +F DSK L E R L L
Sbjct: 54 TPCVLGVDEAGRGPVLGPMVYSAFYLPLPLHHSLLAEEYHFDDSKVLTPEVRSSLMRQLS 113
Query: 71 -----VNDSVGWAVDIIDPRELSAKMLNKN--KINLNEISHDSAIGLITRVLN-IGILLT 122
++ S GW V ++ R+++A ML NLN + D+ LI ++ GI +
Sbjct: 114 TPGNSLSSSCGWGVKVMSARDIAAGMLRPGTRNYNLNAQAMDATTELIRCIVQERGINVK 173
Query: 123 EVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRD-------RT 175
EVY+DT+G+ E YQ KL Q FPS+K V+KKADSLYP VS AS+ AKVTRD R+
Sbjct: 174 EVYIDTIGNPEAYQRKLEQIFPSLKITVAKKADSLYPSVSAASVCAKVTRDVALEICYRS 233
Query: 176 LRGWIFEETAENMHRNFGSGYPGDHKHI---------IFGFPSLVRFSWGTCTSHF--KD 224
+ E +GSGYP D K + +FG+ RFSWGT K
Sbjct: 234 MMKHCNAMEPERSGEGWGSGYPSDSKCVGWLKNDMDKLFGWGLECRFSWGTARELLESKT 293
Query: 225 IVEVLWESDEMDE 237
++V W +E DE
Sbjct: 294 SIKVDWPVEEDDE 306
>gi|323303245|gb|EGA57043.1| Rnh201p [Saccharomyces cerevisiae FostersB]
gi|349580865|dbj|GAA26024.1| K7_Rnh201p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 307
Score = 160 bits (406), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 111/287 (38%), Positives = 154/287 (53%), Gaps = 29/287 (10%)
Query: 5 AALPKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQ--TLATLNFADSKTLKEEKR 62
+AL + +P IMGIDEAGRGPVLGPMVY Y YQ + F DSK L + R
Sbjct: 24 SALLEQKDSPIIMGIDEAGRGPVLGPMVYAVAYSTQKYQDETIIPNYEFDDSKKLTDPIR 83
Query: 63 EELFEDLKVND----SVGWAVDIIDPRELS---AKMLNKNKINLNEISHDSAIGLITRVL 115
LF + ++ +G+A I P ++S +K NLNE +HD + LI V+
Sbjct: 84 RMLFSKIYQDNEELTQIGYATTCITPLDISRGMSKFPPTRNYNLNEQAHDVTMALIDGVI 143
Query: 116 NIGILLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRT 175
+ L+ VY+DTVG YQ KL QRFP +KF V+KKADSLY +VS AS+VAKVTRD
Sbjct: 144 KQNVKLSHVYVDTVGPPASYQKKLEQRFPGVKFTVAKKADSLYCMVSVASVVAKVTRD-- 201
Query: 176 LRGWIFEETAENMHRNFGSGYPGDHKHI---------IFGFPS-LVRFSWGTCTSHF--- 222
+ E + GSGYP D K + + G+P+ +VRFSW TC +
Sbjct: 202 ---ILVESLKRDPDEILGSGYPSDPKTVAWLKRNQTSLMGWPANMVRFSWQTCQTLLDDA 258
Query: 223 -KDIVEVLWESDEMDEDVSSRRSGKRQLKLSDIGFSSSKRRSEEIES 268
KD + + WE MD ++ + K QL+L + ++R +++
Sbjct: 259 SKDSILIKWEEQYMDSRKNAAQKTK-QLQLQMVAKPVRRKRLRTLDN 304
>gi|366995529|ref|XP_003677528.1| hypothetical protein NCAS_0G02890 [Naumovozyma castellii CBS 4309]
gi|342303397|emb|CCC71176.1| hypothetical protein NCAS_0G02890 [Naumovozyma castellii CBS 4309]
Length = 299
Score = 160 bits (406), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 110/266 (41%), Positives = 149/266 (56%), Gaps = 32/266 (12%)
Query: 11 ASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQ--TLATLNFADSKTLKEEKREELFED 68
+P I+G+DEAGRGPVLGPMVYG YC YQ + +F DSK L + R +LF
Sbjct: 29 GDSPVILGVDEAGRGPVLGPMVYGISYCTSQYQDEVLIPHYDFDDSKKLTDAVRRDLFHK 88
Query: 69 LKVN---DSVGWAVDIIDPRELSAKMLN---KNKINLNEISHDSAIGLITRVLNIGILLT 122
+ + VG+A +I P ++S+ ML NLN+ +HD + LI VL+ G+ L+
Sbjct: 89 MYETRDIEDVGYATTVITPTDISSGMLRFPPSKNYNLNQQAHDVTMDLIKGVLDRGVQLS 148
Query: 123 EVYLDTVGDAEKYQAKLSQRFPSI-KFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIF 181
VY+DTVG YQ KL RFP + F V+KKADSLY VVS AS+VAKVTRD +
Sbjct: 149 HVYVDTVGPPASYQKKLEDRFPEVGAFTVAKKADSLYCVVSVASVVAKVTRDI-----LV 203
Query: 182 EETAENMHRNFGSGYPGDHKHI---------IFGFP-SLVRFSWGTCTSHFKD----IVE 227
E + GSGYP D K + +FG+P +VRFSW TC + KD +
Sbjct: 204 ESLKRSDDEIIGSGYPSDPKTVKWLRETQTPLFGWPIEMVRFSWQTCQTLMKDGNNGSIP 263
Query: 228 VLWESDEMDEDVSSRRSGKRQLKLSD 253
+ WE D ++S+++ +Q L D
Sbjct: 264 IEWEEDF----INSKKNMAQQWTLDD 285
>gi|167378158|ref|XP_001734698.1| ribonuclease H2 subunit A [Entamoeba dispar SAW760]
gi|165903720|gb|EDR29164.1| ribonuclease H2 subunit A, putative [Entamoeba dispar SAW760]
Length = 270
Score = 160 bits (406), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 102/258 (39%), Positives = 138/258 (53%), Gaps = 31/258 (12%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVG 76
+GIDEAGRGPVLGPMVY + + + ++T+ F DSK L RE+LF D+K + G
Sbjct: 17 IGIDEAGRGPVLGPMVYSAFFT--TNTEIISTMGFHDSKILSRTMREKLFSDIKESAVCG 74
Query: 77 WAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGIL-LTEVYLDTVGDAEKY 135
++ I+ P +S M K++LNEI+ + +I +++ I + +Y DTVG + KY
Sbjct: 75 FSTRILTPSYISHLMCGPQKVSLNEIAFGAVRDIIHQIIRISQRKIVHIYCDTVGPSGKY 134
Query: 136 QAKLSQRFPSIKF---VVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH-RN 191
Q ++ F IK V KAD LYPVVS ASI AKVTRD L WI+EE N+ +
Sbjct: 135 QMMIANEFKDIKLNQITVCPKADGLYPVVSAASICAKVTRDTCLDNWIYEE--RNIQTKQ 192
Query: 192 FGSGYPGDHKHI---------IFGFPSLVRFSWGTCTSHFKDIVEVLWESDEMDEDVSSR 242
G GYP D I +FG+P+LVRF W T K I+E E V +
Sbjct: 193 VGCGYPSDIDTIKWMKCQYDPLFGYPNLVRFGWETS----KRIIE---------EKVPMK 239
Query: 243 RSGKRQLKLSDIGFSSSK 260
R Q K +G SK
Sbjct: 240 RPFPYQNKQDVVGVIQSK 257
>gi|225555530|gb|EEH03822.1| ribonuclease HI large subunit [Ajellomyces capsulatus G186AR]
Length = 341
Score = 160 bits (405), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 103/252 (40%), Positives = 134/252 (53%), Gaps = 28/252 (11%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLAT--LNFADSKTLKEEKREELFEDLKV 71
PC++G+DEAGRGPVLGPMVY Y P +L +F DSK L R L L
Sbjct: 55 PCVLGVDEAGRGPVLGPMVYSAFYLPLPLHHSLLAEEYHFDDSKVLTPAVRSSLMRQLST 114
Query: 72 ND-----SVGWAVDIIDPRELSAKMLNKN--KINLNEISHDSAIGLITRVLN-IGILLTE 123
D S GW V ++ R+++A ML NLN + D+ LI ++ GI + E
Sbjct: 115 PDNSLSSSCGWGVKVMSARDIAAGMLRPGTRNYNLNAQAMDATTELIRCIVQERGINVKE 174
Query: 124 VYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRD-------RTL 176
VY+DT+G+ E YQ KL Q FPS+K V+KKADSLYP VS AS+ AKVTRD R++
Sbjct: 175 VYIDTIGNPEAYQRKLEQIFPSLKITVAKKADSLYPSVSAASVCAKVTRDVALEICYRSM 234
Query: 177 RGWIFEETAENMHRNFGSGYPGDHKHI---------IFGFPSLVRFSWGTCTSHF--KDI 225
E+ +GSGYP D K + +FG+ RFSWGT K
Sbjct: 235 MEHCNAMEPESSGEGWGSGYPSDSKCVGWLKNDMDKLFGWGHECRFSWGTARELLESKTS 294
Query: 226 VEVLWESDEMDE 237
++V W +E DE
Sbjct: 295 IKVDWPVEEDDE 306
>gi|226287752|gb|EEH43265.1| ribonuclease H2 subunit A [Paracoccidioides brasiliensis Pb18]
Length = 343
Score = 160 bits (405), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 106/261 (40%), Positives = 144/261 (55%), Gaps = 37/261 (14%)
Query: 13 NPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLAT--LNFADSKTLKEEKREELFE--- 67
PC++G+DEAGRGPVLGPMVY Y P S +L +F DSK L R L
Sbjct: 55 TPCVLGVDEAGRGPVLGPMVYSAFYLPLSLHHSLLAEEHHFDDSKVLTPAVRTNLMRLLC 114
Query: 68 --DLKVNDSVGWAVDIIDPRELSAKML--NKNKINLNEISHDSAIGLITRVL-NIGILLT 122
D +N S GW V ++ R++S ML NLN + D+ I LI ++ +G+ +
Sbjct: 115 TPDHSLNTSCGWGVKVMSARDISTGMLRSGTGNYNLNAQAMDATIELIICIVEKMGVNVK 174
Query: 123 EVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTL------ 176
EVY+DTVG+ E YQ KL + FP++K V+KKADSLYP VS AS+ AKVTRD L
Sbjct: 175 EVYIDTVGNPETYQKKLKRIFPALKITVTKKADSLYPSVSAASVCAKVTRDVALELCYEA 234
Query: 177 ----RGWIFEETAENMHRNFGSGYPGDHKHI---------IFGFPSLVRFSWGTCTSHFK 223
RG + +E A + +GSGYP D K + +FG+ + RFSWGT +
Sbjct: 235 LVKQRGAMEQEGAAD---GWGSGYPSDSKCVGWLKNDMDSLFGWGNECRFSWGTARELLE 291
Query: 224 DI--VEVLWESDEMDEDVSSR 242
++V W +DEDV ++
Sbjct: 292 SNRGIKVDW---PVDEDVEAQ 309
>gi|151944462|gb|EDN62740.1| Rnh2A [Saccharomyces cerevisiae YJM789]
gi|259149289|emb|CAY82531.1| Rnh201p [Saccharomyces cerevisiae EC1118]
Length = 307
Score = 160 bits (405), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 111/287 (38%), Positives = 154/287 (53%), Gaps = 29/287 (10%)
Query: 5 AALPKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQ--TLATLNFADSKTLKEEKR 62
+AL + +P IMGIDEAGRGPVLGPMVY Y YQ + F DSK L + R
Sbjct: 24 SALLEQNDSPIIMGIDEAGRGPVLGPMVYAVAYSTQKYQDETIIPNYEFDDSKKLTDPIR 83
Query: 63 EELFEDLKVND----SVGWAVDIIDPRELS---AKMLNKNKINLNEISHDSAIGLITRVL 115
LF + ++ +G+A I P ++S +K NLNE +HD + LI V+
Sbjct: 84 RMLFSKIYQDNEELTQIGYATTCITPLDISRGMSKFPPTRNYNLNEQAHDVTMALIDGVI 143
Query: 116 NIGILLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRT 175
+ L+ VY+DTVG YQ KL QRFP +KF V+KKADSLY +VS AS+VAKVTRD
Sbjct: 144 KQNVKLSHVYVDTVGPPASYQKKLEQRFPGVKFTVAKKADSLYCMVSVASVVAKVTRD-- 201
Query: 176 LRGWIFEETAENMHRNFGSGYPGDHKHI---------IFGFPS-LVRFSWGTCTSHF--- 222
+ E + GSGYP D K + + G+P+ +VRFSW TC +
Sbjct: 202 ---ILVESLKRDPDEILGSGYPSDPKTVAWLKRNQTSLMGWPANMVRFSWQTCQTLLDDA 258
Query: 223 -KDIVEVLWESDEMDEDVSSRRSGKRQLKLSDIGFSSSKRRSEEIES 268
KD + + WE MD ++ + K QL+L + ++R +++
Sbjct: 259 SKDSILIKWEEQYMDSRKNAAQKTK-QLQLQMVAKPVRRKRLRTLDN 304
>gi|256274456|gb|EEU09358.1| Rnh201p [Saccharomyces cerevisiae JAY291]
Length = 307
Score = 160 bits (404), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 110/281 (39%), Positives = 150/281 (53%), Gaps = 29/281 (10%)
Query: 5 AALPKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQ--TLATLNFADSKTLKEEKR 62
+AL + +P IMGIDEAGRGPVLGPMVY Y YQ + F DSK L + R
Sbjct: 24 SALLEQKDSPIIMGIDEAGRGPVLGPMVYAVAYSTQKYQDETIIPNYEFDDSKKLTDPIR 83
Query: 63 EELFEDLKVND----SVGWAVDIIDPRELS---AKMLNKNKINLNEISHDSAIGLITRVL 115
LF + ++ +G+A I P ++S +K NLNE +HD + LI V+
Sbjct: 84 RMLFSKIYQDNEELTQIGYATTCITPLDISRGMSKFPPTRNYNLNEQAHDVTMALIDGVI 143
Query: 116 NIGILLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRT 175
+ L+ VY+DTVG YQ KL QRFP +KF V+KKADSLY +VS AS+VAKVTRD
Sbjct: 144 KQNVKLSHVYVDTVGPPASYQKKLEQRFPGVKFTVAKKADSLYCMVSVASVVAKVTRD-- 201
Query: 176 LRGWIFEETAENMHRNFGSGYPGDHKHI---------IFGFPS-LVRFSWGTCTSHFKDI 225
+ E + GSGYP D K + + G+P+ +VRFSW TC + D
Sbjct: 202 ---ILVESLKRDPDEILGSGYPSDPKTVAWLKRNQTSLMGWPANMVRFSWQTCQTLLDDA 258
Query: 226 ----VEVLWESDEMDEDVSSRRSGKRQLKLSDIGFSSSKRR 262
+ + WE MD ++ + K QL+L + ++R
Sbjct: 259 SKNSIPIKWEEQYMDSRKNAAQKTK-QLQLQMVAKPVRRKR 298
>gi|50291445|ref|XP_448155.1| hypothetical protein [Candida glabrata CBS 138]
gi|49527466|emb|CAG61106.1| unnamed protein product [Candida glabrata]
Length = 307
Score = 160 bits (404), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 106/242 (43%), Positives = 133/242 (54%), Gaps = 26/242 (10%)
Query: 13 NPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQT--LATLNFADSKTLKEEKREELFEDLK 70
+P I+G+DEAGRGPV+GPMVYG YC YQ + F DSK L + R LF +
Sbjct: 39 SPVILGVDEAGRGPVMGPMVYGISYCTKEYQDKVLIPKYTFDDSKKLTDPVRRMLFSKMY 98
Query: 71 VN--DSVGWAVDIIDPRELSAKMLN---KNKINLNEISHDSAIGLITRVLNIGILLTEVY 125
D VG+A I P ++S M NLNE +HD + LI V++ G+ + VY
Sbjct: 99 AGEIDQVGYATTAITPYDISTGMSRYPPSRNYNLNEQAHDVTMALIQGVIDRGVSIDHVY 158
Query: 126 LDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETA 185
+DTVG YQ KL RFPSIKF V+KKADSLY VVS AS+VAKVTRD + E
Sbjct: 159 VDTVGPPASYQRKLEDRFPSIKFTVAKKADSLYCVVSVASVVAKVTRD-----LLIESLR 213
Query: 186 ENMHRNFGSGYPGDHKHI---------IFGFP-SLVRFSWGTCTSHFKD----IVEVLWE 231
GSGYP D K + + G+P +VRFSW TC + KD V + W+
Sbjct: 214 RTPDEIMGSGYPSDPKTVAWLKGNQKPLLGWPIEIVRFSWQTCQTLLKDKSTGSVSIKWD 273
Query: 232 SD 233
D
Sbjct: 274 ED 275
>gi|6324257|ref|NP_014327.1| Rnh201p [Saccharomyces cerevisiae S288c]
gi|1730743|sp|P53942.1|RNH2A_YEAST RecName: Full=Ribonuclease H2 subunit A; Short=RNase H2 subunit A;
AltName: Full=RNase H(201); AltName: Full=RNase H(35);
AltName: Full=Ribonuclease HI large subunit; Short=RNase
HI large subunit; AltName: Full=Ribonuclease HI subunit
A
gi|791114|emb|CAA60188.1| unknown [Saccharomyces cerevisiae]
gi|1301957|emb|CAA95946.1| unnamed protein product [Saccharomyces cerevisiae]
gi|190409061|gb|EDV12326.1| ribonuclease HI 35 large subunit [Saccharomyces cerevisiae RM11-1a]
gi|207341690|gb|EDZ69676.1| YNL072Wp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|285814579|tpg|DAA10473.1| TPA: Rnh201p [Saccharomyces cerevisiae S288c]
gi|323331967|gb|EGA73379.1| Rnh201p [Saccharomyces cerevisiae AWRI796]
gi|323352575|gb|EGA85074.1| Rnh201p [Saccharomyces cerevisiae VL3]
gi|392296919|gb|EIW08020.1| Rnh201p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 307
Score = 159 bits (403), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 110/287 (38%), Positives = 153/287 (53%), Gaps = 29/287 (10%)
Query: 5 AALPKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQ--TLATLNFADSKTLKEEKR 62
+AL + +P IMGIDEAGRGPVLGPMVY Y YQ + F DSK L + R
Sbjct: 24 SALLEQNDSPIIMGIDEAGRGPVLGPMVYAVAYSTQKYQDETIIPNYEFDDSKKLTDPIR 83
Query: 63 EELFEDLKVND----SVGWAVDIIDPRELS---AKMLNKNKINLNEISHDSAIGLITRVL 115
LF + ++ +G+A I P ++S +K NLNE +HD + LI V+
Sbjct: 84 RMLFSKIYQDNEELTQIGYATTCITPLDISRGMSKFPPTRNYNLNEQAHDVTMALIDGVI 143
Query: 116 NIGILLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRT 175
+ L+ VY+DTVG YQ KL QRFP +KF V+KKADSLY +VS AS+VAKVTRD
Sbjct: 144 KQNVKLSHVYVDTVGPPASYQKKLEQRFPGVKFTVAKKADSLYCMVSVASVVAKVTRD-- 201
Query: 176 LRGWIFEETAENMHRNFGSGYPGDHKHI---------IFGFPS-LVRFSWGTCTSHFKDI 225
+ E + GSGYP D K + + G+P+ +VRFSW TC + D
Sbjct: 202 ---ILVESLKRDPDEILGSGYPSDPKTVAWLKRNQTSLMGWPANMVRFSWQTCQTLLDDA 258
Query: 226 ----VEVLWESDEMDEDVSSRRSGKRQLKLSDIGFSSSKRRSEEIES 268
+ + WE MD ++ + K QL+L + ++R +++
Sbjct: 259 SKNSIPIKWEEQYMDSRKNAAQKTK-QLQLQMVAKPVRRKRLRTLDN 304
>gi|240273728|gb|EER37247.1| ribonuclease HI large subunit [Ajellomyces capsulatus H143]
gi|325094841|gb|EGC48151.1| ribonuclease HI large subunit [Ajellomyces capsulatus H88]
Length = 341
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 102/252 (40%), Positives = 134/252 (53%), Gaps = 28/252 (11%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLAT--LNFADSKTLKEEKREELFEDLKV 71
PC++G+DEAGRGPVLGPMVY Y P +L +F DSK L R L L
Sbjct: 55 PCVLGVDEAGRGPVLGPMVYSAFYLPLPLHHSLLAEEYHFDDSKVLTPAVRSSLMRQLST 114
Query: 72 ND-----SVGWAVDIIDPRELSAKMLNKN--KINLNEISHDSAIGLITRVLN-IGILLTE 123
D S GW V ++ R+++A ML NLN + D+ LI ++ GI + E
Sbjct: 115 PDNSLSSSCGWGVKVMSARDIAAGMLQPGTRNYNLNAQAMDATTELIRCIVQERGINVKE 174
Query: 124 VYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRD-------RTL 176
VY+DT+G+ E YQ KL Q FPS++ V+KKADSLYP VS AS+ AKVTRD R++
Sbjct: 175 VYIDTIGNPEAYQRKLEQIFPSLQITVAKKADSLYPSVSAASVCAKVTRDVALEICYRSM 234
Query: 177 RGWIFEETAENMHRNFGSGYPGDHKHI---------IFGFPSLVRFSWGTCTSHF--KDI 225
E+ +GSGYP D K + +FG+ RFSWGT K
Sbjct: 235 MEHCNAMEPESSGEGWGSGYPSDSKCVGWLKNDMDKLFGWGHECRFSWGTARELLESKTS 294
Query: 226 VEVLWESDEMDE 237
++V W +E DE
Sbjct: 295 IKVDWPVEEDDE 306
>gi|346323837|gb|EGX93435.1| ribonuclease HI large subunit [Cordyceps militaris CM01]
Length = 338
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 101/264 (38%), Positives = 135/264 (51%), Gaps = 33/264 (12%)
Query: 7 LPKWASNP-----CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTL--ATLNFADSKTLKE 59
LP+ SNP C +G+DEAGRGPVLGPMVYG Y P + L + +F DSK L
Sbjct: 44 LPQDPSNPASAVPCCLGVDEAGRGPVLGPMVYGVFYLPIAQSDALLRSAHHFDDSKVLTA 103
Query: 60 EKREELFEDL-----KVNDSVGWAVDIIDPRELSAKMLNK-NKINLNEISHDSAIGLITR 113
R L L ++ + GWA + R++ A ML NLN + D+ + LI
Sbjct: 104 GVRASLMATLCAPGSDLHAACGWATAALSARDIGANMLQPVGAYNLNAQAMDATVDLIRG 163
Query: 114 VLNIGILLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRD 173
V G+ + E+Y+DT+G YQAKL + FP+ K V+KKADSLY VS AS+ AKVTRD
Sbjct: 164 VYARGVNVQEIYVDTIGPPATYQAKLQRIFPTAKVTVAKKADSLYACVSAASVCAKVTRD 223
Query: 174 RTLRGWIFEETAENMHRN--------FGSGYPGDHK---------HIIFGFPSLVRFSWG 216
L + H+ +GSGYP D + H +FG+ RFSWG
Sbjct: 224 VALETLYEDRKDPADHQGDEDDGAPAWGSGYPSDGRCTGWMRGNLHPVFGWGPECRFSWG 283
Query: 217 TCTSHFK---DIVEVLWESDEMDE 237
T + + V+V W D+ E
Sbjct: 284 TAKDMLEAKGNGVKVEWPVDDDGE 307
>gi|380488296|emb|CCF37475.1| ribonuclease HII [Colletotrichum higginsianum]
Length = 341
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 95/243 (39%), Positives = 128/243 (52%), Gaps = 21/243 (8%)
Query: 13 NPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTL--ATLNFADSKTLKEEKREELFEDL- 69
P +G+DEAGRGPVLGPMVYG Y P L T +F DSK L R +L L
Sbjct: 63 TPVCLGVDEAGRGPVLGPMVYGVFYLPIPLSDPLLRETHHFDDSKVLTPAVRSQLMTALC 122
Query: 70 ----KVNDSVGWAVDIIDPRELSAKMLNKN-KINLNEISHDSAIGLITRVLNIGILLTEV 124
+ +S G+A+ + R++S+ M+ NLN + D+ + LI V G+ + E+
Sbjct: 123 TAGSDLAESCGFAISALSARDISSGMMRPGANYNLNAQAMDATVELIKGVFAQGVNVQEI 182
Query: 125 YLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEET 184
Y+DTVG YQAKL + FP+ K V KKADSLYP VS AS+ AKV+RD L
Sbjct: 183 YVDTVGQPAAYQAKLQRFFPATKITVEKKADSLYPCVSAASVCAKVSRDAALEVLYKARA 242
Query: 185 AENMHRN--FGSGYPGDHK---------HIIFGFPSLVRFSWGTCTSHF--KDIVEVLWE 231
E+ +GSGYP D + H +FG+ RFSWGT K ++V W
Sbjct: 243 PESAEEGMAWGSGYPSDGRCVSWMRSNMHPVFGWGPECRFSWGTAKDMLDGKGALKVDWP 302
Query: 232 SDE 234
++
Sbjct: 303 VED 305
>gi|440299535|gb|ELP92087.1| ribonuclease H2 subunit A, putative [Entamoeba invadens IP1]
Length = 274
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 89/214 (41%), Positives = 127/214 (59%), Gaps = 17/214 (7%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVG 76
+GIDEAGRGPV+GPMVY + + ++ + F DSK L + +RE L+ D+ + G
Sbjct: 22 IGIDEAGRGPVVGPMVYTAFFT--TDADEVSDMGFKDSKVLNKAQRESLYSDIHNSPFCG 79
Query: 77 WAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGIL-LTEVYLDTVGDAEKY 135
++ +++ P +++ KM KI+LNE++ + +I+R+LNI + V++DTVG KY
Sbjct: 80 YSSEVLTPSDINKKMCQPLKISLNEVAFSAVRTIISRILNITQRGVKGVFVDTVGPPAKY 139
Query: 136 QAKLSQRFPSIK---FVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF 192
+A ++ FP I V KAD+ YPVVSGASIVAKVTRD L WIF+ET F
Sbjct: 140 KAMIAHSFPQIDPECITVCSKADAKYPVVSGASIVAKVTRDVCLERWIFKETHTEGFSGF 199
Query: 193 GSGYPGDHKHI---------IFGFPSLVRFSWGT 217
GYP D I +FG+P+ VRF W T
Sbjct: 200 --GYPTDLVTINWMKESYDPVFGYPNFVRFGWET 231
>gi|258569747|ref|XP_002543677.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237903947|gb|EEP78348.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 352
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 103/258 (39%), Positives = 141/258 (54%), Gaps = 28/258 (10%)
Query: 8 PKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLAT--LNFADSKTLKEEKREEL 65
P + PC++G+DEAGRGPVLGPMVY Y P S +L +F DSK L R L
Sbjct: 61 PSIPTTPCVLGVDEAGRGPVLGPMVYSAFYLPLSLHHSLLAEEHHFNDSKVLTPGVRSNL 120
Query: 66 FEDL-----KVNDSVGWAVDIIDPRELSAKMLNKNK--INLNEISHDSAIGLITRVLN-I 117
L + S GWAV ++ R++SA M NLN + D+ + +I V+
Sbjct: 121 MRLLCTPGHSLQKSCGWAVKLLSARDISAGMQRPGAGMYNLNAQAMDATVEIIRGVVEER 180
Query: 118 GILLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRD---- 173
G+ + EVY+DT+G+ + YQ KL FPS+K V+KKADSL+P VS AS+ AKVTRD
Sbjct: 181 GVDVKEVYIDTIGNPQSYQKKLEMIFPSLKITVAKKADSLFPCVSAASVCAKVTRDSALD 240
Query: 174 ---RTLRGWIFEETAENMHRNFGSGYPGDHK---------HIIFGFPSLVRFSWGTCTS- 220
L+ + E+M+ +GSGYP D K H +FG+ + RFSWGT
Sbjct: 241 ICYEALQKERVGKGMEHMNDGWGSGYPSDSKCTSWLKKEMHPLFGWGNECRFSWGTAKEL 300
Query: 221 -HFKDIVEVLWESDEMDE 237
K ++V W +DE +E
Sbjct: 301 LEVKAGLKVDWPADEDEE 318
>gi|145238902|ref|XP_001392098.1| ribonuclease H2 subunit A [Aspergillus niger CBS 513.88]
gi|134076599|emb|CAK45152.1| unnamed protein product [Aspergillus niger]
Length = 352
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 104/254 (40%), Positives = 142/254 (55%), Gaps = 30/254 (11%)
Query: 11 ASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLAT--LNFADSKTLKEEKREELFED 68
+ N I+G+DEAGRGPVLGPMVY Y P TL T +F DSK L R L +
Sbjct: 63 SPNYLILGVDEAGRGPVLGPMVYSAFYLPQDLHHTLLTRDYSFNDSKALTPGVRANLMKL 122
Query: 69 L-----KVNDSVGWAVDIIDPRELSAKML--NKNKINLNEISHDSAIGLITRVL-NIGIL 120
L +++S GWAV ++ R++S+ M+ NLN + D+ I LI ++ + +
Sbjct: 123 LCTPGNPLHESCGWAVKLLSARDISSGMMRPGTGAYNLNAQAMDATIELIRGIIEDRNMD 182
Query: 121 LTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTL---R 177
+ EVY+DT+G+ YQ KL + FPS++ V+KKADSLYP VS AS+ AKVTRD L
Sbjct: 183 VREVYIDTIGNPATYQQKLEKIFPSLRITVAKKADSLYPCVSAASVAAKVTRDVALDLCH 242
Query: 178 GWIFEET-AENMHR-----NFGSGYPGDHK---------HIIFGFPSLVRFSWGTCTS-- 220
I+E+T AE+ R ++GSGYP D K IFG+ + RFSWGT
Sbjct: 243 QAIYEDTHAEDSPRAVVPQSWGSGYPSDSKCANWLKKNMDPIFGWGNECRFSWGTAKELL 302
Query: 221 HFKDIVEVLWESDE 234
K +V W +E
Sbjct: 303 ELKGRPKVDWPGEE 316
>gi|50310553|ref|XP_455296.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49644432|emb|CAG98004.1| KLLA0F04774p [Kluyveromyces lactis]
Length = 304
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 103/244 (42%), Positives = 138/244 (56%), Gaps = 24/244 (9%)
Query: 11 ASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQ-TLATLNFADSKTLKEEKREELFEDL 69
+++ I+G+DEAGRGPV+GPMVYG YC Y++ + F DSK L + R++LF +
Sbjct: 43 STDEIILGVDEAGRGPVMGPMVYGISYCTRQYEKDVICKYGFDDSKKLTDPVRQKLFAMI 102
Query: 70 KVN--DSVGWAVDIIDPRELSAKMLN---KNKINLNEISHDSAIGLITRVLNIGILLTEV 124
D VG+A I ++S+ M + NLNE +HD I LI VL G+ + V
Sbjct: 103 YGGEIDGVGYATTSITACDISSGMFRFPPEKNYNLNEQAHDVTIALIDDVLKSGVKVGHV 162
Query: 125 YLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEET 184
Y+DTVG YQ KL FP KF V+KKADS+YP+VS AS+VAKVTRD I +
Sbjct: 163 YVDTVGPPISYQKKLESIFPQCKFTVAKKADSIYPIVSVASVVAKVTRDI-----ILSQC 217
Query: 185 AENMHRNFGSGYPGDHKHI---------IFGF-PSLVRFSWGTCTSHF---KDIVEVLWE 231
+ GSGYPGD K + + G+ P +VRFSW TC + K +E+ WE
Sbjct: 218 KKTEDEILGSGYPGDSKTVQWLRNEMKPLMGWSPYMVRFSWQTCATMLANSKSTIEIEWE 277
Query: 232 SDEM 235
D M
Sbjct: 278 EDAM 281
>gi|406864455|gb|EKD17500.1| ribonuclease HII [Marssonina brunnea f. sp. 'multigermtubi' MB_m1]
Length = 359
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 101/267 (37%), Positives = 136/267 (50%), Gaps = 50/267 (18%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLA--TLNFADSKTLKEEKREELFE----- 67
C +G+DEAGRGPVLGPMVYG Y P L T +F DSK L R L E
Sbjct: 67 CALGVDEAGRGPVLGPMVYGLFYLPIPLSDPLLRDTHHFDDSKVLTPTVRSNLMEKLCSP 126
Query: 68 DLKVNDSVGWAVDIIDPRELSAKMLNKNKI-NLNEISHDSAIGLITRVLNIGILLTEVYL 126
D ++ GWAV+++ R++ A M+ NLN + D+ I LI V G+ + E+++
Sbjct: 127 DTDLHSQCGWAVEVMSARDIGANMMKPAATYNLNAQAMDATIMLIKGVYERGVNVKEIFI 186
Query: 127 DTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRT----------- 175
DT+G+ E YQ KL + FP+ K V+KKADSLYP VS AS+ AKVTRD
Sbjct: 187 DTIGNPETYQRKLQRIFPTAKVTVAKKADSLYPCVSAASVCAKVTRDAAMEVLYDSYLSK 246
Query: 176 ---------LRGWIFEETAENMHRNFGSGYPGDHK---------HIIFGFPSLVRFSWGT 217
+ G + AE ++GSGYP D + +FG+ RFSWGT
Sbjct: 247 TSDGEEDVEMEGTKMAKAAE--ESSWGSGYPSDARCTSWLKRSMDPVFGWGPECRFSWGT 304
Query: 218 CTSHFKDIVEVL-------WESDEMDE 237
KD+++V W +E DE
Sbjct: 305 A----KDMLDVKGAAAKVEWPVEEDDE 327
>gi|350636009|gb|EHA24370.1| hypothetical protein ASPNIDRAFT_209236 [Aspergillus niger ATCC
1015]
Length = 352
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 104/254 (40%), Positives = 142/254 (55%), Gaps = 30/254 (11%)
Query: 11 ASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLAT--LNFADSKTLKEEKREELFED 68
+ N I+G+DEAGRGPVLGPMVY Y P TL T +F DSK L R L +
Sbjct: 63 SPNYLILGVDEAGRGPVLGPMVYSAFYLPQDLHHTLLTRDYSFNDSKVLTPGVRANLMKL 122
Query: 69 L-----KVNDSVGWAVDIIDPRELSAKML--NKNKINLNEISHDSAIGLITRVL-NIGIL 120
L +++S GWAV ++ R++S+ M+ NLN + D+ I LI ++ + +
Sbjct: 123 LCTPGNPLHESCGWAVKLLSARDISSGMMRPGTGAYNLNAQAMDATIELIRGIIEDRNMD 182
Query: 121 LTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTL---R 177
+ EVY+DT+G+ YQ KL + FPS++ V+KKADSLYP VS AS+ AKVTRD L
Sbjct: 183 VREVYIDTIGNPATYQQKLEKIFPSLRITVAKKADSLYPCVSAASVAAKVTRDVALDLCH 242
Query: 178 GWIFEET-AENMHR-----NFGSGYPGDHK---------HIIFGFPSLVRFSWGTCTS-- 220
I+E+T AE+ R ++GSGYP D K IFG+ + RFSWGT
Sbjct: 243 QAIYEDTHAEDSPRAVVPQSWGSGYPSDSKCANWLKKNMDPIFGWGNECRFSWGTAKELL 302
Query: 221 HFKDIVEVLWESDE 234
K +V W +E
Sbjct: 303 ELKGRPKVDWPGEE 316
>gi|11387103|sp|Q9P5X8.1|RNH2A_NEUCR RecName: Full=Ribonuclease H2 subunit A; Short=RNase H2 subunit A;
AltName: Full=Ribonuclease HI large subunit; Short=RNase
HI large subunit; AltName: Full=Ribonuclease HI subunit
A
gi|7800995|emb|CAB91392.1| probable 35 kDa ribonuclease H [Neurospora crassa]
Length = 317
Score = 158 bits (399), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 97/235 (41%), Positives = 134/235 (57%), Gaps = 28/235 (11%)
Query: 12 SNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATL--NFADSKTLKEEKREELFEDL 69
+ PC +G+DEAGRGPVLGPMVY Y P + L +F DSK L R L ++L
Sbjct: 41 NTPCCLGVDEAGRGPVLGPMVYSAFYLPLTLSDPLLKQKHSFDDSKVLTPAVRLSLMKEL 100
Query: 70 -----KVNDSVGWAVDIIDPRELSAKMLNKNK---INLNEISHDSAIGLITRVLNIGILL 121
+++D+ G+A + P +S+ ML +K NLN+ + D+ I LI + G+ +
Sbjct: 101 CTKDTELHDNCGYATSSLSPLSISSGMLKASKAQIYNLNQQAMDATIALIKGIYERGVNV 160
Query: 122 TEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIF 181
T++++DT+G YQ KL + FP+ K V+KKADSLYPVVS AS+VAKVTRD L
Sbjct: 161 TDIFIDTIGQPAAYQKKLERVFPTAKITVAKKADSLYPVVSAASVVAKVTRDIAL----- 215
Query: 182 EETAENMHRNFGSGYPGDHK---------HIIFGFPSLVRFSWGTCTSHFKDIVE 227
E + +GSGYP D K H +FG+ RFSWGT KD++E
Sbjct: 216 EVLWADRTMAWGSGYPSDSKCVSWLKQNMHPVFGWGPECRFSWGTA----KDMLE 266
>gi|358336633|dbj|GAA55095.1| ribonuclease H2 subunit A [Clonorchis sinensis]
Length = 296
Score = 157 bits (398), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 95/216 (43%), Positives = 127/216 (58%), Gaps = 12/216 (5%)
Query: 50 NFADSKTLKEEKREELFED-LKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAI 108
+ +DSKTL E +RE L L+ D + AV +I PR ++ ML + K +LN ISHD+AI
Sbjct: 43 HISDSKTLTEHQRESLLTRMLQHTDWLVGAVRVISPRFITENMLGRCKTSLNVISHDAAI 102
Query: 109 GLITRVLNIGILLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVA 168
GLI L+ G+ + EVY+DTVG AE Y+AKL FP +K V KAD YP+VS ASI A
Sbjct: 103 GLIQAALDKGVNVKEVYVDTVGKAEHYEAKLQTLFPKLKICVESKADDTYPIVSAASIFA 162
Query: 169 KVTRDRTLRGWIFEETAE-NMHRNFGSGYPGD---HKHI------IFGFPSLVRFSWGTC 218
KVTRDR L+ W E + GSGYPGD +++ +FGFPSLVR SW T
Sbjct: 163 KVTRDRLLQLWPMNERGLFSDSVPVGSGYPGDPLTKRYLRQCVDPVFGFPSLVRSSWSTA 222
Query: 219 TSHF-KDIVEVLWESDEMDEDVSSRRSGKRQLKLSD 253
+ K V++ W+ DE E + R+ L++
Sbjct: 223 GAILEKSGVKITWDDDEDQEKAPDAKHAARKRVLTE 258
>gi|367054002|ref|XP_003657379.1| hypothetical protein THITE_2122999 [Thielavia terrestris NRRL 8126]
gi|347004645|gb|AEO71043.1| hypothetical protein THITE_2122999 [Thielavia terrestris NRRL 8126]
Length = 366
Score = 157 bits (398), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 104/278 (37%), Positives = 134/278 (48%), Gaps = 51/278 (18%)
Query: 8 PKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTL--ATLNFADSKTLKEEKREEL 65
P A PC +G+DEAGRGPVLGPMVYG Y P L A +F DSK L R L
Sbjct: 53 PGTAGPPCALGVDEAGRGPVLGPMVYGVFYLPLPLSDPLLRAAHHFDDSKVLTPAVRSAL 112
Query: 66 FEDL-----KVNDSVGWAVDIIDPRELSAKMLNKNK-------INLNEISHDSAIGLITR 113
L ++ S GWAV + R++ A ML NLN + D+ + L+
Sbjct: 113 MRTLCTPSSDLHASCGWAVTALSARDIGAGMLRPGGGAAGGAAYNLNAQAMDATVALVRA 172
Query: 114 VLNIGILLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRD 173
V G+ + E+Y+DT+G YQA+L + FP+ K V+KKADSLYP VS AS+ AKVTRD
Sbjct: 173 VYARGVNVREIYVDTIGPPAAYQARLERVFPTAKITVAKKADSLYPCVSAASVCAKVTRD 232
Query: 174 -----------RTLRGWIFEETAENMHRN-----------FGSGYPGD---------HKH 202
R + G + AE + +GSGYP D H H
Sbjct: 233 AALETLWKARGRAVNGAGVDVGAEGQEQEDKEADDDKGMAWGSGYPSDGRCVSWLKGHMH 292
Query: 203 IIFGFPSLVRFSWGTCTSHFKDI------VEVLWESDE 234
+FG+ RFSWGT + V+V W DE
Sbjct: 293 PVFGWGPECRFSWGTAKDMLEAAPAKGGGVKVEWPVDE 330
>gi|448117125|ref|XP_004203179.1| Piso0_000780 [Millerozyma farinosa CBS 7064]
gi|359384047|emb|CCE78751.1| Piso0_000780 [Millerozyma farinosa CBS 7064]
Length = 366
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 98/265 (36%), Positives = 146/265 (55%), Gaps = 32/265 (12%)
Query: 5 AALPKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREE 64
+A+ P ++G+DEAGRGPVL P ++ + F+DSKTLKE R +
Sbjct: 78 SAIASQPDEPLVLGVDEAGRGPVLTPSFNVLESENPNFFNSAWYFGFSDSKTLKEGVRTD 137
Query: 65 LF-----EDLKVNDSVGWAVDIIDPRELSAKML----NKNKINLNEISHDSAIGLITRVL 115
L E+ +++++VGWA I +++S+ ML K NLN+ +HD+ I LI +++
Sbjct: 138 LLQKIEDEEHELHNNVGWATTQISAKDISSGMLRSSLGKGAYNLNDQAHDTTIELIQQII 197
Query: 116 NIGILLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRT 175
+ + + ++++DTVG YQAKL +RFP ++ V+KKADSL+PVVS ASIVAKVTRD+
Sbjct: 198 DKKLNIAKIFVDTVGPPASYQAKLQRRFPGVEVTVTKKADSLFPVVSTASIVAKVTRDKV 257
Query: 176 LRGW-----IFEETAENMHRNFGSGYPGDHK---------HIIFG-FPSLVRFSWGTCTS 220
L + + + A FGSGYP D +FG F LVRFSW T
Sbjct: 258 LHHYCSIAPLLQSAA------FGSGYPSDPNTSRWLNSSVDTVFGWFFGLVRFSWQTAKD 311
Query: 221 HF--KDIVEVLWESDEMDEDVSSRR 243
V++E++ + ED R
Sbjct: 312 ALVKNGACSVIYEAECVKEDSGYRN 336
>gi|302927067|ref|XP_003054420.1| hypothetical protein NECHADRAFT_75114 [Nectria haematococca mpVI
77-13-4]
gi|256735361|gb|EEU48707.1| hypothetical protein NECHADRAFT_75114 [Nectria haematococca mpVI
77-13-4]
Length = 343
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 91/234 (38%), Positives = 128/234 (54%), Gaps = 26/234 (11%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLA--TLNFADSKTLKEEKREELFEDL-- 69
PC +G+DEAGRGPVLGPMVYG + P + +L T +F DSK L R +L L
Sbjct: 67 PCCLGVDEAGRGPVLGPMVYGVFFLPLTISDSLLRDTHHFDDSKVLTAAVRSKLMRTLCT 126
Query: 70 ---KVNDSVGWAVDIIDPRELSAKMLNKNKI-NLNEISHDSAIGLITRVLNIGILLTEVY 125
++ GWA+ + R+++ ML+ NLN + D+ + LI G+ + E+Y
Sbjct: 127 PGSDLHTECGWAIKALSARDITTGMLHPTTTYNLNAQALDATVDLIKAAYAAGVNVQEIY 186
Query: 126 LDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETA 185
+DTVG +QAKL + FP+ K V+KKADSL+ VS AS+ AKVTRD TL + +
Sbjct: 187 VDTVGPPASHQAKLQRFFPTAKITVTKKADSLFACVSAASVCAKVTRDATLE--VLSDAK 244
Query: 186 ENMHRN---FGSGYPGDHK---------HIIFGFPSLVRFSWGTCTSHFKDIVE 227
+ N +GSGY D + H +FG+ RF WGT KD++E
Sbjct: 245 GELTENGMGWGSGYSSDKRCTGWMKNSMHPLFGWGHECRFGWGTS----KDMLE 294
>gi|367000307|ref|XP_003684889.1| hypothetical protein TPHA_0C03020 [Tetrapisispora phaffii CBS 4417]
gi|357523186|emb|CCE62455.1| hypothetical protein TPHA_0C03020 [Tetrapisispora phaffii CBS 4417]
Length = 308
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 104/231 (45%), Positives = 132/231 (57%), Gaps = 30/231 (12%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLN--FADSKTLKEEKREELF------ 66
I+G+DEAGRGPV+GPMVYG YC YQ + N F DSK L + R +LF
Sbjct: 36 VILGVDEAGRGPVMGPMVYGISYCTQRYQDEVLIPNYEFDDSKKLTDVVRRKLFAKMYEP 95
Query: 67 ----EDLKVNDSVGWAVDIIDPRELSAKMLN---KNKINLNEISHDSAIGLITRVLNIGI 119
D D VG+A I P ++S+ ML NLNE +HD + LI V+ G+
Sbjct: 96 ITEGSDQVEIDGVGYATTAITPVDISSGMLRFPPSKNYNLNEQAHDVTMALIEGVVQRGV 155
Query: 120 LLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW 179
+L VY+DTVG YQ KL +RFPSIKF V+KKADSLY VVS AS+VAKV+RD
Sbjct: 156 VLDHVYVDTVGPPNSYQKKLEERFPSIKFTVAKKADSLYCVVSVASVVAKVSRDI----- 210
Query: 180 IFEETAENMHRNFGSGYPGDHKHI---------IFGFP-SLVRFSWGTCTS 220
+ E+ + GSGYP D + +FG+P S+VRFSW TC +
Sbjct: 211 LIEKLKRSSDEKTGSGYPSDPNTVAWLRDNQRPLFGWPNSMVRFSWQTCKT 261
>gi|361126847|gb|EHK98833.1| putative Ribonuclease H2 subunit A [Glarea lozoyensis 74030]
Length = 344
Score = 154 bits (388), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 96/230 (41%), Positives = 124/230 (53%), Gaps = 27/230 (11%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLA--TLNFADSKTLKEEKREELFEDL-- 69
PC +G+DEAGRGPVLGPMVYG Y P L T +F DSK L R L E L
Sbjct: 63 PCALGVDEAGRGPVLGPMVYGLFYLPLPLSDPLLRQTHHFDDSKVLTPTVRSSLMETLCT 122
Query: 70 ---KVNDSVGWAVDIIDPRELSAKMLNKNKI-NLNEISHDSAIGLITRVLNIGILLTEVY 125
+ GWAV+++ R++ A M+ NLN + D+ I LI V G+ + E+Y
Sbjct: 123 PSTDLYTQCGWAVEVMSARDIGANMMKPAATYNLNAQAMDATINLIHGVYRQGVNVKEIY 182
Query: 126 LDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETA 185
+DT+G+ YQ KL + FP+ V+KKADSLYP VS AS+ AKVTRD L ++E
Sbjct: 183 IDTIGNPATYQRKLEKIFPTALVTVAKKADSLYPCVSAASVCAKVTRDAALEV-LYESYL 241
Query: 186 E---------NMHRNFGSGYPGDHK---------HIIFGFPSLVRFSWGT 217
E + +GSGYP D K +FG+ S RFSWGT
Sbjct: 242 EPKDEEDEMEVVEPTWGSGYPSDAKCTTWLKRNMDPVFGWGSECRFSWGT 291
>gi|261192900|ref|XP_002622856.1| ribonuclease HI large subunit [Ajellomyces dermatitidis SLH14081]
gi|239588991|gb|EEQ71634.1| ribonuclease HI large subunit [Ajellomyces dermatitidis SLH14081]
Length = 343
Score = 154 bits (388), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 107/275 (38%), Positives = 144/275 (52%), Gaps = 42/275 (15%)
Query: 13 NPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLAT--LNFADSKTLKEEKREELFE--- 67
PC++G+DEAGRGPVLGPMVY Y P S +L +F DSK L R L
Sbjct: 55 TPCVLGVDEAGRGPVLGPMVYSAFYLPLSLHHSLLAEEHHFDDSKVLTPAVRSNLMHLLC 114
Query: 68 --DLKVNDSVGWAVDIIDPRELSAKMLNKN--KINLNEISHDSAIGLITRVLN-IGILLT 122
D ++ S GW V ++ R++SA ML NLN + D+ LI ++ G+ +
Sbjct: 115 SPDNSLSTSCGWGVKVMSARDISAGMLRPRTRNYNLNAQAMDATTELIRCIVEEKGVNVR 174
Query: 123 EVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTL------ 176
EVY+DT+G+ E YQ KL + FPS+K V+KKADSLYP VS ASI AKVTRD L
Sbjct: 175 EVYIDTIGNPETYQRKLERVFPSLKITVAKKADSLYPSVSAASICAKVTRDVALEICYEA 234
Query: 177 ----RGWIFEETAENMHRNFGSGYPGDHKHI---------IFGFPSLVRFSWGTCTSHF- 222
R + +++A +GSGYP D K + +FG+ RFSWGT
Sbjct: 235 LLKQRDTVKQDSAT---EGWGSGYPSDSKCVSWLKNDMDTLFGWGYECRFSWGTARELLE 291
Query: 223 -KDIVEVLWESDEMDE--------DVSSRRSGKRQ 248
K V V W +E +E +S+ R+G +
Sbjct: 292 SKTGVRVDWPVEEDEEAQRLTNFFSISATRAGNNE 326
>gi|358368996|dbj|GAA85612.1| ribonuclease HI large subunit [Aspergillus kawachii IFO 4308]
Length = 353
Score = 153 bits (387), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 98/254 (38%), Positives = 139/254 (54%), Gaps = 30/254 (11%)
Query: 11 ASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLAT--LNFADSKTLKEEKREELFED 68
+ N ++G+DEAGRGPVLGPMVY Y P +L T +F DSK L R L +
Sbjct: 63 SPNRLVLGVDEAGRGPVLGPMVYSAFYLPQDLHHSLLTRDYSFNDSKVLTPGVRANLMKL 122
Query: 69 L-----KVNDSVGWAVDIIDPRELSAKML--NKNKINLNEISHDSAIGLITRVL-NIGIL 120
L +++S GWAV ++ R++S+ M+ NLN + D+ I LI ++ + +
Sbjct: 123 LCTPGNPLHESCGWAVKLLSARDISSGMMRPGAGAYNLNAQAMDATIELIRGIIEDRDMD 182
Query: 121 LTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTL---R 177
+ EVY+DT+G+ YQ KL + FPS++ V+KKADSLYP VS AS+ AKVTRD L
Sbjct: 183 VREVYIDTIGNPATYQQKLEKIFPSLRITVAKKADSLYPCVSAASVAAKVTRDVALDLCH 242
Query: 178 GWIFEETAEN------MHRNFGSGYPGDHK---------HIIFGFPSLVRFSWGTCTS-- 220
I+E+ + +++GSGYP D K IFG+ + RFSWGT
Sbjct: 243 QAIYEDVRSEDASEAVVPQSWGSGYPSDSKCANWLKKNMDPIFGWGNECRFSWGTAKELL 302
Query: 221 HFKDIVEVLWESDE 234
K +V W +E
Sbjct: 303 ELKGRPKVDWPGEE 316
>gi|83770969|dbj|BAE61102.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391871226|gb|EIT80391.1| ribonuclease HI [Aspergillus oryzae 3.042]
Length = 363
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 99/257 (38%), Positives = 137/257 (53%), Gaps = 32/257 (12%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLAT--LNFADSKTLKEEKREELFEDL---- 69
++G+DEAGRGPVLGPMVY Y P +L NF DSK L R L L
Sbjct: 80 VLGVDEAGRGPVLGPMVYSAFYLPHDLHHSLLARDYNFNDSKVLTPGVRANLMRLLCTPG 139
Query: 70 -KVNDSVGWAVDIIDPRELSAKMLNKNK--INLNEISHDSAIGLITRVL-NIGILLTEVY 125
+ +S GWA ++ R++S+ M+ NLN + D+ + LI ++ + + EVY
Sbjct: 140 TPLFESCGWATKLLSARDISSGMMRPGAGVYNLNAQAMDATVELIREIVEGRKVDIREVY 199
Query: 126 LDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTL--------R 177
+DT+G+ YQ KL + FPS+K V+KKADSLYP VS AS+ AKVTRD L +
Sbjct: 200 IDTIGNPATYQQKLERIFPSLKITVAKKADSLYPCVSAASVAAKVTRDVALELCHEDIVK 259
Query: 178 GWIFEETAENMH-RNFGSGYPGDHKHI---------IFGFPSLVRFSWGTCTS--HFKDI 225
F++ ++ ++GSGYP D K + IFG+ + RFSWGT K
Sbjct: 260 AQQFDDPSQATSTESWGSGYPSDSKCVGWLRRNMDPIFGWGNECRFSWGTSKEMLEMKGG 319
Query: 226 VEVLWESDEMDEDVSSR 242
V+V W D DE+ R
Sbjct: 320 VKVDWPPD--DENTQLR 334
>gi|239613574|gb|EEQ90561.1| ribonuclease HI large subunit [Ajellomyces dermatitidis ER-3]
gi|327352659|gb|EGE81516.1| ribonuclease [Ajellomyces dermatitidis ATCC 18188]
Length = 343
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 107/274 (39%), Positives = 142/274 (51%), Gaps = 40/274 (14%)
Query: 13 NPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLAT--LNFADSKTLKEEKREELFE--- 67
PC++G+DEAGRGPVLGPMVY Y P S +L +F DSK L R L
Sbjct: 55 TPCVLGVDEAGRGPVLGPMVYSAFYLPLSLHHSLLAEEHHFDDSKVLTPAVRSNLMHLLC 114
Query: 68 --DLKVNDSVGWAVDIIDPRELSAKMLNKN--KINLNEISHDSAIGLITRVLN-IGILLT 122
D ++ S GW V ++ R++SA ML NLN + D+ LI ++ G+ +
Sbjct: 115 SPDNSLSTSCGWGVKVMSARDISAGMLRPRTRNYNLNAQAMDATTELIRCIVEEKGVNVR 174
Query: 123 EVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFE 182
EVY+DT+G+ E YQ KL + FPS+K V+KKADSLYP VS ASI AKVTRD L I
Sbjct: 175 EVYIDTIGNPETYQRKLERVFPSLKITVAKKADSLYPSVSAASICAKVTRDVALE--ICY 232
Query: 183 ET---------AENMHRNFGSGYPGDHKHI---------IFGFPSLVRFSWGTCTSHF-- 222
E ++ +GSGYP D K + +FG+ RFSWGT
Sbjct: 233 EALLKQRDTVKQDSTTEGWGSGYPSDSKCVSWLKNDMDTLFGWGYECRFSWGTARELLES 292
Query: 223 KDIVEVLWESDEMDE--------DVSSRRSGKRQ 248
K V V W +E +E +S+ R+G +
Sbjct: 293 KTGVRVDWPVEEDEEAQRLTNFFSISATRAGNNE 326
>gi|317137770|ref|XP_001727941.2| ribonuclease H2 subunit A [Aspergillus oryzae RIB40]
Length = 351
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 99/257 (38%), Positives = 137/257 (53%), Gaps = 32/257 (12%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLAT--LNFADSKTLKEEKREELFEDL---- 69
++G+DEAGRGPVLGPMVY Y P +L NF DSK L R L L
Sbjct: 68 VLGVDEAGRGPVLGPMVYSAFYLPHDLHHSLLARDYNFNDSKVLTPGVRANLMRLLCTPG 127
Query: 70 -KVNDSVGWAVDIIDPRELSAKMLNKNK--INLNEISHDSAIGLITRVL-NIGILLTEVY 125
+ +S GWA ++ R++S+ M+ NLN + D+ + LI ++ + + EVY
Sbjct: 128 TPLFESCGWATKLLSARDISSGMMRPGAGVYNLNAQAMDATVELIREIVEGRKVDIREVY 187
Query: 126 LDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTL--------R 177
+DT+G+ YQ KL + FPS+K V+KKADSLYP VS AS+ AKVTRD L +
Sbjct: 188 IDTIGNPATYQQKLERIFPSLKITVAKKADSLYPCVSAASVAAKVTRDVALELCHEDIVK 247
Query: 178 GWIFEETAENMH-RNFGSGYPGDHKHI---------IFGFPSLVRFSWGTCTS--HFKDI 225
F++ ++ ++GSGYP D K + IFG+ + RFSWGT K
Sbjct: 248 AQQFDDPSQATSTESWGSGYPSDSKCVGWLRRNMDPIFGWGNECRFSWGTSKEMLEMKGG 307
Query: 226 VEVLWESDEMDEDVSSR 242
V+V W D DE+ R
Sbjct: 308 VKVDWPPD--DENTQLR 322
>gi|171689874|ref|XP_001909876.1| hypothetical protein [Podospora anserina S mat+]
gi|170944899|emb|CAP71010.1| unnamed protein product [Podospora anserina S mat+]
Length = 342
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 97/257 (37%), Positives = 134/257 (52%), Gaps = 34/257 (13%)
Query: 12 SNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLA--TLNFADSKTLKEEKREELFEDL 69
S P +G+DEAGRGPVLGPMVYG Y P L T +F DSK L + R L + L
Sbjct: 51 SVPVCLGVDEAGRGPVLGPMVYGIFYLPLPLSDPLLRQTHHFDDSKVLTPQVRSSLMQTL 110
Query: 70 K-----VNDSVGWAVDIIDPRELSAKMLNKNKI----NLNEISHDSAIGLITRVLNIGIL 120
++ S GWA ++ ++SA M+ + NLN + D+ + LI + + G+
Sbjct: 111 STAGSDLHQSCGWATTLLSAGDISAGMMRPSNAGGSYNLNAQAMDATVQLIQGIYDRGVN 170
Query: 121 LTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTL---- 176
+ E+Y+DT+G YQ KL + FP+ K V+KKADSLYP VS AS+ AKVTRD L
Sbjct: 171 IQEIYVDTIGQPAAYQKKLERIFPTAKITVAKKADSLYPCVSAASVCAKVTRDAALEVLW 230
Query: 177 --------RGWIFEETAENMHRNFGSGYPGDHK---------HIIFGFPSLVRFSWGTCT 219
R ++ E+ +GSGYP D + H +FG+ RFSWGT
Sbjct: 231 KTRGRPPAREEEKDKNEEDTDMEWGSGYPSDQRCVTWLRGNMHPVFGWGPECRFSWGTAK 290
Query: 220 SHFKDI--VEVLWESDE 234
+ V+V W D+
Sbjct: 291 DMLEGPKGVKVDWPVDD 307
>gi|296810182|ref|XP_002845429.1| ribonuclease H2 subunit A [Arthroderma otae CBS 113480]
gi|238842817|gb|EEQ32479.1| ribonuclease H2 subunit A [Arthroderma otae CBS 113480]
Length = 342
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 100/259 (38%), Positives = 139/259 (53%), Gaps = 47/259 (18%)
Query: 12 SNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFED-LK 70
+ PC++GIDEAGRGPVLGPMVY Y P ++L L EE F+D
Sbjct: 64 TTPCVLGIDEAGRGPVLGPMVYSAFYLPMHLHKSL----------LAEEHH---FDDSHS 110
Query: 71 VNDSVGWAVDIIDPRELSAKMLNKNK---INLNEISHDSAIGLITRVLNIG-ILLTEVYL 126
+++S GWAV ++ R++S+ ML + NLN + D+ I +I V+ I + EVY+
Sbjct: 111 LHNSCGWAVKVMSARDISSGMLRPSMAAVYNLNAQALDATIEIIRGVVETQRIDVKEVYV 170
Query: 127 DTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRG----WIFE 182
DT+G E +QA+L + FP +K V+KKADSLYP VS AS+ AKVTRD L W+ +
Sbjct: 171 DTIGKPETHQARLLRVFPGLKITVAKKADSLYPSVSAASVCAKVTRDAALEACYDNWVNQ 230
Query: 183 ------------ETAENMH--RNFGSGYPGDHKHI---------IFGFPSLVRFSWGTCT 219
E E ++GSGYP D K I +FG+ + RFSWGT
Sbjct: 231 RKRKRAQESTGDEATEQQEDVMSWGSGYPSDGKCIGWLKKDMDPLFGWGTECRFSWGTSK 290
Query: 220 S--HFKDIVEVLWESDEMD 236
K ++V W ++E D
Sbjct: 291 ELLETKSGLKVDWPAEEED 309
>gi|453087271|gb|EMF15312.1| ribonuclease H-like protein [Mycosphaerella populorum SO2202]
Length = 374
Score = 150 bits (380), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 100/287 (34%), Positives = 148/287 (51%), Gaps = 60/287 (20%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTL--ATLNFADSKTLKEEKREELFEDL--- 69
C++GIDEAGRGPVLGPMVYG Y P ++ TL T F DSK L R L + +
Sbjct: 60 CVLGIDEAGRGPVLGPMVYGLFYLPTTFHHTLLTQTYKFNDSKLLTPTFRSHLMQQICSP 119
Query: 70 --KVNDSVGWAVDIIDPRELSAKMLNKNKI----------------NLNEISHDSAIGLI 111
+ GWA+ + +++S+ ML NLN + ++ I LI
Sbjct: 120 ETPLYTHCGWAIRSLSAQDISSSMLRPTHTPFTSTSGAINATPQISNLNNQAIEATITLI 179
Query: 112 TRVL-NIGILLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKV 170
++L ++ I + +Y+DT+G E YQAKL + FP++K V+KKADSL+P VS AS+ AKV
Sbjct: 180 HQILYDLKINIQHIYIDTIGKPEIYQAKLEKIFPAVKITVAKKADSLFPCVSAASVCAKV 239
Query: 171 TRDRTLRGWIFE-----------ETAE----NMHRNFGSGYPGD---------HKHIIFG 206
TRD L + ++AE +GSGYP D + +FG
Sbjct: 240 TRDAALEVLYMKSAEEEERRRRNDSAEVKTTTTTMAWGSGYPSDVRCANWLKNNMDPVFG 299
Query: 207 FPSLVRFSWGTCTSHFKDIVEVL-------W-ESDEMDEDVSSRRSG 245
+ + RFSWGT K+++EV W E+D+ +E+ + + +G
Sbjct: 300 WGNECRFSWGTA----KELLEVRGAPCRVDWPEADDAEENDNMKLTG 342
>gi|403218559|emb|CCK73049.1| hypothetical protein KNAG_0M01960 [Kazachstania naganishii CBS
8797]
Length = 301
Score = 150 bits (379), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 105/264 (39%), Positives = 152/264 (57%), Gaps = 33/264 (12%)
Query: 12 SNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLN--FADSKTLKEEKREELFEDL 69
++P I+G+DEAGRGPV+GPMVYG YC SY++ N F DSK L + R LFE +
Sbjct: 32 NDPVILGVDEAGRGPVVGPMVYGVAYCKRSYEEDFIKRNYEFDDSKKLTDPVRRSLFEKM 91
Query: 70 KVNDSV---GWAVDIIDPRELSAKMLN---KNKINLNEISHDSAIGLITRVLNIGILLTE 123
+ + G+A +I ++S+ M + NLNE +H+ + LI L+ G+ L
Sbjct: 92 YGSAEISELGYATTVITATDISSGMSRFPPSKQYNLNEQAHNVTMDLIQGCLDRGVKLHH 151
Query: 124 VYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEE 183
VY+DTVG YQ KL RFP +F V+KKADSL+ VVS AS+VAKVTRD I E
Sbjct: 152 VYVDTVGPPVSYQKKLEDRFPQQRFTVTKKADSLFCVVSVASVVAKVTRD------ILVE 205
Query: 184 TAENMHRNFGSGYPG---------DHKHIIFGFPS-LVRFSWGTCTSHFKDI---VEVLW 230
+ + + GSGYP DH+ +FG+P+ +VRFSW TC + + V++ W
Sbjct: 206 SLG--YADIGSGYPSDPRTKQWLRDHQMDLFGWPNHVVRFSWQTCRTLLEGNPHGVQIQW 263
Query: 231 ESDEMDEDVSSRRSGKRQLKLSDI 254
E D +S++++ +Q +L +
Sbjct: 264 EEDF----ISTKKTMHKQWELQQL 283
>gi|70991314|ref|XP_750506.1| ribonuclease HI large subunit [Aspergillus fumigatus Af293]
gi|66848138|gb|EAL88468.1| ribonuclease HI large subunit [Aspergillus fumigatus Af293]
Length = 363
Score = 150 bits (379), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 94/251 (37%), Positives = 131/251 (52%), Gaps = 34/251 (13%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLAT--LNFADSKTLKEEKREELFEDL---- 69
++G+DEAGRGPVLGPMVY Y P + +L +F DSK L R L L
Sbjct: 78 VLGVDEAGRGPVLGPMVYSAFYIPHTLHHSLLARDYSFNDSKVLTPGVRANLMRLLCTAG 137
Query: 70 -KVNDSVGWAVDIIDPRELSAKML--NKNKINLNEISHDSAIGLITRVLN-IGILLTEVY 125
++ S GWA ++ R++SA M+ NLN + D+ + +I ++ + + EVY
Sbjct: 138 NPLHASCGWATKVLSARDISAGMMRPTSGAYNLNAQAMDATVEIIRGIVEERRVDIREVY 197
Query: 126 LDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETA 185
+DT+G+ YQ KL + FP++K V+KKAD+LYP VS AS+VAKVTRD L E
Sbjct: 198 IDTIGNPATYQQKLERIFPTLKITVAKKADALYPCVSAASVVAKVTRDMALE--FCHEAV 255
Query: 186 ENMHR-----------NFGSGYPGDHKHI---------IFGFPSLVRFSWGTCTS--HFK 223
+ R ++GSGYP D K + IFG+ + RFSWGT K
Sbjct: 256 YGLQRYEAPSMEVATDSWGSGYPSDSKCVSWLRNHMDPIFGWGNECRFSWGTAKEMLELK 315
Query: 224 DIVEVLWESDE 234
V W +E
Sbjct: 316 GGTRVDWPVEE 326
>gi|255718283|ref|XP_002555422.1| KLTH0G08976p [Lachancea thermotolerans]
gi|238936806|emb|CAR24985.1| KLTH0G08976p [Lachancea thermotolerans CBS 6340]
Length = 342
Score = 150 bits (379), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 106/238 (44%), Positives = 131/238 (55%), Gaps = 25/238 (10%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFA--DSKTLKEEKREELFEDLKVN- 72
I+G+DEAGRGPVLGPMVYG YC YQ + +A DSK L + R +LF+ +
Sbjct: 81 ILGVDEAGRGPVLGPMVYGISYCTREYQDEVLKKRYAFDDSKKLTDPVRRDLFQRMYTGE 140
Query: 73 -DSVGWAVDIIDPRELSAKMLN---KNKINLNEISHDSAIGLITRVLNIGILLTEVYLDT 128
D VG+A I ++S+ ML + NLNE +HD I LI VL G+ + VY+DT
Sbjct: 141 IDQVGYATTCISACDISSGMLRFPPEKNYNLNEQAHDVTIALIRGVLERGVAVEHVYVDT 200
Query: 129 VGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENM 188
VG YQ KL FPSIKF V+KKADSL+ VVS AS+VAKVTRD + E
Sbjct: 201 VGPPATYQRKLEGLFPSIKFTVAKKADSLFCVVSVASVVAKVTRDV-----LIELLRARP 255
Query: 189 HRNFGSGYPGDHKHI---------IFGFP-SLVRFSWGTCTSHF---KDIVEVLWESD 233
GSGYP D K +FG+P VRFSW T + D V + WE D
Sbjct: 256 DEVLGSGYPSDAKTTAWLRSNRTALFGWPLQTVRFSWQTSQTLLDRNPDAVPIEWEDD 313
>gi|159130978|gb|EDP56091.1| ribonuclease HI large subunit [Aspergillus fumigatus A1163]
Length = 363
Score = 150 bits (378), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 90/233 (38%), Positives = 126/233 (54%), Gaps = 32/233 (13%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLAT--LNFADSKTLKEEKREELFEDL---- 69
++G+DEAGRGPVLGPMVY Y P + +L +F DSK L R L L
Sbjct: 78 VLGVDEAGRGPVLGPMVYSAFYIPHTLHHSLLARDYSFNDSKVLTPGVRANLMRLLCTAG 137
Query: 70 -KVNDSVGWAVDIIDPRELSAKML--NKNKINLNEISHDSAIGLITRVLN-IGILLTEVY 125
++ S GWA ++ R++SA M+ NLN + D+ + +I ++ + + EVY
Sbjct: 138 NPLHASCGWATKVLSARDISAGMMRPTSGAYNLNAQAMDATVEIIRGIVEERRVDIREVY 197
Query: 126 LDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETA 185
+DT+G+ YQ KL + FP++K V+KKAD+LYP VS AS+VAKVTRD L E
Sbjct: 198 IDTIGNPATYQQKLERIFPTLKITVAKKADALYPCVSAASVVAKVTRDMALE--FCHEAV 255
Query: 186 ENMHR-----------NFGSGYPGDHKHI---------IFGFPSLVRFSWGTC 218
+ R ++GSGYP D K + IFG+ + RFSWGT
Sbjct: 256 YGLQRYEAPSMEVATDSWGSGYPSDSKCVSWLRNHMDPIFGWGNECRFSWGTA 308
>gi|67537888|ref|XP_662718.1| hypothetical protein AN5114.2 [Aspergillus nidulans FGSC A4]
gi|40743105|gb|EAA62295.1| hypothetical protein AN5114.2 [Aspergillus nidulans FGSC A4]
gi|259484559|tpe|CBF80886.1| TPA: ribonuclease HI large subunit (AFU_orthologue; AFUA_1G07600)
[Aspergillus nidulans FGSC A4]
Length = 339
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 103/243 (42%), Positives = 138/243 (56%), Gaps = 30/243 (12%)
Query: 11 ASNP----CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLAT--LNFADSKTLKEEKREE 64
A+NP I+GIDEAGRGPVLGPMVY Y P S +L + +F DSK L R
Sbjct: 55 ATNPEHDYLILGIDEAGRGPVLGPMVYSAFYLPSSLHHSLLSEEYSFNDSKVLTAGVRAN 114
Query: 65 LFEDL-----KVNDSVGWAVDIIDPRELSAKMLNKNK--INLNEISHDSAIGLITRVLNI 117
L L +++S GWA ++ R++S+ M+ NLN + D+ I LI V+
Sbjct: 115 LMRILCTQGSPLHESCGWATKLLSARDISSGMMRPAAGVYNLNAQAMDATIELIRGVVEE 174
Query: 118 GIL-LTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTL 176
L + EVY+DT+G+ YQ KL FPS++ V+KKADSLYP VS AS+VAKVTRD L
Sbjct: 175 RKLNVREVYIDTIGNPASYQKKLEMVFPSLRITVAKKADSLYPCVSAASVVAKVTRDVAL 234
Query: 177 RGWIFEETAEN--MHRNFGSGYPGDHKHI---------IFGFPSLVRFSWGTCTSHFKDI 225
+E EN + +GSGYP D K + +FG+ + RFSWGT K++
Sbjct: 235 -DVCYEVLKENGGVGDGWGSGYPSDSKCVGWMRTNMDPVFGWGNECRFSWGTA----KEM 289
Query: 226 VEV 228
+EV
Sbjct: 290 LEV 292
>gi|119496273|ref|XP_001264910.1| ribonuclease HI large subunit [Neosartorya fischeri NRRL 181]
gi|119413072|gb|EAW23013.1| ribonuclease HI large subunit [Neosartorya fischeri NRRL 181]
Length = 363
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 94/251 (37%), Positives = 131/251 (52%), Gaps = 34/251 (13%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLAT--LNFADSKTLKEEKREELFEDL---- 69
++G+DEAGRGPVLGPMVY Y P + +L +F DSK L R L L
Sbjct: 78 VLGVDEAGRGPVLGPMVYSAFYIPHTLHHSLLARDYSFNDSKVLTPGVRANLMRLLCTAG 137
Query: 70 -KVNDSVGWAVDIIDPRELSAKMLN--KNKINLNEISHDSAIGLITRVLN-IGILLTEVY 125
++ S GWA ++ R++SA M+ NLN + D+ + +I ++ + + EVY
Sbjct: 138 NPLHASCGWATKVLSARDISAGMMRPASGAYNLNAQAMDATVEIIRGIVEERRVDIREVY 197
Query: 126 LDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETA 185
+DT+G+ YQ KL + FP++K V+KKAD+LYP VS AS+VAKVTRD L E
Sbjct: 198 IDTIGNPATYQQKLERIFPTLKITVAKKADALYPCVSAASVVAKVTRDVALE--FCHEAV 255
Query: 186 ENMHR-----------NFGSGYPGDHKHI---------IFGFPSLVRFSWGTCTS--HFK 223
+ R ++GSGYP D K + IFG+ + RFSWGT K
Sbjct: 256 YGLQRSEAPSLGVATDSWGSGYPSDSKCVSWLRNHMDPIFGWGNECRFSWGTAKEMLELK 315
Query: 224 DIVEVLWESDE 234
V W +E
Sbjct: 316 GGTRVDWPVEE 326
>gi|157876580|ref|XP_001686636.1| putative ribonuclease H [Leishmania major strain Friedlin]
gi|23477654|gb|AAN34793.1| ribonuclease H(35) [Leishmania major]
gi|56713264|gb|AAW23359.1| ribonuclease HIIB [Leishmania major]
gi|68129711|emb|CAJ09017.1| putative ribonuclease H [Leishmania major strain Friedlin]
Length = 301
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 95/254 (37%), Positives = 127/254 (50%), Gaps = 26/254 (10%)
Query: 16 IMGIDEAGRGPVLGPMVY-GCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
++GIDEAGRGPV+GPMVY G + + + + ADSK L E +R + L+ +
Sbjct: 46 VLGIDEAGRGPVIGPMVYTGAVISLGEHDDLVRLCHVADSKMLNERRRLASLQQLRQLKT 105
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITR-VLNIGILLTEVYLDTVGDAE 133
+ P E+S M ++ N N +SH++AI +I+ L L Y+DTVG E
Sbjct: 106 FRSFTVCVSPEEISKTMTGRSGRNSNTLSHETAIQIISEATLASAGKLCAAYVDTVGPPE 165
Query: 134 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG 193
YQA+L+ RFP ++ V+KKADS++P+VS ASIVAK RD + E + N G
Sbjct: 166 TYQARLAGRFPHLRVTVAKKADSIFPIVSAASIVAKTVRDTAI---------EALGENIG 216
Query: 194 SGYPGD---------HKHIIFGFP---SLVRFSWGTCTSHFKDI---VEVLWESDEMDED 238
SGYP D H H F FP R SWG D V V+ E D
Sbjct: 217 SGYPSDPRTMEWLRSHVHRFFSFPHAYDFARHSWGPLVQLANDPAVRVPVVCEQDLEGAR 276
Query: 239 VSSRRSGKRQLKLS 252
R RQ KLS
Sbjct: 277 QQGRGGDSRQQKLS 290
>gi|183231893|ref|XP_001913636.1| ribonuclease H2 subunit A [Entamoeba histolytica HM-1:IMSS]
gi|169802278|gb|EDS89588.1| ribonuclease H2 subunit A, putative [Entamoeba histolytica
HM-1:IMSS]
Length = 354
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 82/188 (43%), Positives = 113/188 (60%), Gaps = 9/188 (4%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVG 76
+GIDEAGRGPVLGPMVY + + + ++T+ F DSK L RE+LF D+K + G
Sbjct: 17 IGIDEAGRGPVLGPMVYSAFFT--TNTEVISTMGFHDSKILSRTMREKLFTDIKESGVCG 74
Query: 77 WAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGIL-LTEVYLDTVGDAEKY 135
++ I+ P +S M K++LNEI+ + +I +++ + +Y DTVG ++KY
Sbjct: 75 FSTRILTPSYISQMMCGPQKVSLNEIAFSAVRDIIHQIIRTSQRKIVHIYCDTVGPSKKY 134
Query: 136 QAKLSQRFPSIKF---VVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH-RN 191
QA ++ F +K V KAD LYPVVS ASI AKVTRD L WI+EET N+ R
Sbjct: 135 QAMIANEFKEVKLSQITVCPKADGLYPVVSAASICAKVTRDTCLDNWIYEET--NIQTRQ 192
Query: 192 FGSGYPGD 199
G GYP D
Sbjct: 193 VGCGYPSD 200
>gi|389603175|ref|XP_001568699.2| putative ribonuclease H [Leishmania braziliensis MHOM/BR/75/M2904]
gi|322505755|emb|CAM43828.2| putative ribonuclease H [Leishmania braziliensis MHOM/BR/75/M2904]
Length = 318
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 99/257 (38%), Positives = 137/257 (53%), Gaps = 30/257 (11%)
Query: 16 IMGIDEAGRGPVLGPMVY-GCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
I+GIDEAGRGPV+GPMVY G + + + + ADSK L E R + L+ +
Sbjct: 46 ILGIDEAGRGPVIGPMVYTGAVISLGEHDDLVRLCHVADSKILDERHRLASLQQLRQLKT 105
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITR-VLNIGILLTEVYLDTVGDAE 133
+ P E+S+ M ++ NLN +SH++A+ +I+ L L Y+DTVG +
Sbjct: 106 FRSFTVCVSPEEISSTMTGRSGRNLNTLSHETAVHIISEATLASAGKLCAAYVDTVGPPD 165
Query: 134 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG 193
YQA+L+ RFP ++ V+KKADS +P+VS ASIVAK TRD + + + N G
Sbjct: 166 TYQARLAGRFPHLRVTVAKKADSKFPIVSAASIVAKTTRDTAI---------QELGENIG 216
Query: 194 SGYPGD---------HKHIIFGFPSL---VRFSWGTCTSHFKD---IVEVLWESDEMDED 238
SGYP D H H F F + VR SWG D V V++E D +DE+
Sbjct: 217 SGYPSDPRAIAWLRSHVHRFFVFRHVYGYVRHSWGPVVQLANDPAVCVPVVFEQD-LDEE 275
Query: 239 VSSR--RSGK-RQLKLS 252
+ R R G RQ KLS
Sbjct: 276 AARRLERGGDGRQQKLS 292
>gi|402466642|gb|EJW02092.1| ribonuclease HII [Edhazardia aedis USNM 41457]
Length = 250
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 90/219 (41%), Positives = 122/219 (55%), Gaps = 27/219 (12%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
I+G+DEAGRGP LG MVYG + F DSK + E KR E + ++
Sbjct: 30 VIIGVDEAGRGPALGHMVYGAMIAEEIKHP------FTDSKAIAESKRNEFLKIIE--KE 81
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGIL-LTEVYLDTVGDAE 133
+ I P+ +S +M ++ LN+I++ I ++ ++N + ++ VYLD +G
Sbjct: 82 YSYVYTAIHPQYISHQMSVES---LNDIAYKVVINILKTIVNSKLYNISCVYLDALGPNT 138
Query: 134 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG 193
Y L + FP IKFVV KADS YPVV+GASIVAKVTRDR LR W + + FG
Sbjct: 139 TYMRILEKNFPKIKFVVECKADSTYPVVAGASIVAKVTRDRLLRNWPVTD------KKFG 192
Query: 194 SGYPGD---HKHI------IFGFPSLVRFSWGTCTSHFK 223
SGYPGD K + +FGFP++VRFSW T FK
Sbjct: 193 SGYPGDDVTRKWLERNFCPVFGFPNIVRFSWKTVKQFFK 231
>gi|145479147|ref|XP_001425596.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124392667|emb|CAK58198.1| unnamed protein product [Paramecium tetraurelia]
Length = 297
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 95/227 (41%), Positives = 126/227 (55%), Gaps = 25/227 (11%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLA-TLNFADSKTLKEEKREELFEDLKVNDSV 75
+GIDEAGRGPVLGPM+Y Y P Y + ++ T F DSK + E R++LF+ L +
Sbjct: 34 LGIDEAGRGPVLGPMLYASCYWPTKYHKLISETCKFVDSKQINEAARDKLFDVLT---QL 90
Query: 76 GWAVDIIDPRELSAKMLNKNK-----INLNEISHDSAIGLITRVLNIGILLTEVYLDTVG 130
V + REL+A+ L+KN+ INLN+ISH++A LI + G +TE+++DTVG
Sbjct: 91 KGKVLTFETRELTAEYLSKNQLAHLTINLNDISHNTAAELIQSAIQKGYKITEIFVDTVG 150
Query: 131 DAEKY----QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAE 186
+ Y Q KL + VV +KADS Y VS ASI AKVTRD + I +E
Sbjct: 151 PKQTYKNFLQGKLQEIGKEANIVVEEKADSKYANVSAASICAKVTRDYRI-TLIQQEILP 209
Query: 187 NMHRNFGSGYPGDHKH---------IIFGFPSLVRFSWGTCTSHFKD 224
N + GSGYPGD K F +P VRFSW T + D
Sbjct: 210 N--DSIGSGYPGDPKTKKYLENTNIPFFVYPKYVRFSWQTIKTIIND 254
>gi|121702279|ref|XP_001269404.1| ribonuclease HI large subunit [Aspergillus clavatus NRRL 1]
gi|119397547|gb|EAW07978.1| ribonuclease HI large subunit [Aspergillus clavatus NRRL 1]
Length = 362
Score = 146 bits (369), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 89/229 (38%), Positives = 127/229 (55%), Gaps = 27/229 (11%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLAT--LNFADSKTLKEEKREELFEDL---- 69
++G+DEAGRGPVLGPMVY Y P + +L +F DSK L R L L
Sbjct: 79 VLGVDEAGRGPVLGPMVYSAFYLPHTLHHSLLARDYSFDDSKVLTAGVRANLMRLLCTAG 138
Query: 70 -KVNDSVGWAVDIIDPRELSAKMLNKNK--INLNEISHDSAIGLITRVLN-IGILLTEVY 125
++ S GWA ++ R++S+ M+ NLN + D+ + +I ++ + + EVY
Sbjct: 139 NPLHASCGWATKLLSARDISSGMMRPGSGVYNLNAQAMDATVEIIRGIVEERKVDVREVY 198
Query: 126 LDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTL-------RG 178
+DT+G+ YQ KL + FP++K V+KKADSLYP VS AS+ AKVTRD L +
Sbjct: 199 IDTIGNPATYQQKLERIFPTLKITVAKKADSLYPCVSAASVAAKVTRDVALELCHDAFQA 258
Query: 179 WIFEETAENMHRN-FGSGYPGDHKHI---------IFGFPSLVRFSWGT 217
ET+ M + +GSGYP D K + +FG+ + RFSWGT
Sbjct: 259 LQQLETSHEMATDSWGSGYPSDSKCVNWLRKHMDPVFGWGNECRFSWGT 307
>gi|115385935|ref|XP_001209514.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114187961|gb|EAU29661.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 339
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 93/256 (36%), Positives = 134/256 (52%), Gaps = 30/256 (11%)
Query: 11 ASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLAT--LNFADSKTLKEEKREELFED 68
+ N ++G+DEAGRGPVLGPMVY Y P +L +F DSK L R L
Sbjct: 54 SQNYFVLGVDEAGRGPVLGPMVYSAFYLPHDLHHSLLAQKYSFDDSKVLTPAVRLNLMRT 113
Query: 69 L-----KVNDSVGWAVDIIDPRELSAKMLNKNK--INLNEISHDSAIGLITRVLN-IGIL 120
L + +S GWA ++ +++S+ M+ NLN + D+ I +I ++ +
Sbjct: 114 LCTPGTPLFESCGWATKLLTAQDISSGMMRPAAAAYNLNAQAMDATIEIIRGIVEERKVN 173
Query: 121 LTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 180
+ EVY+DT+G+ YQ KL + FP++K V+KKADSLYP VS AS+ AKVTRD L
Sbjct: 174 VREVYIDTIGNPASYQQKLERIFPTLKITVAKKADSLYPCVSAASVAAKVTRDIALE-LC 232
Query: 181 FEE--------TAENMHRNFGSGYPGDHKHI---------IFGFPSLVRFSWGTCTS--H 221
+EE ++ +GSGYP D K + +FG+ + RFSWGT
Sbjct: 233 YEEIMKAKSLDQSQTTTDTWGSGYPSDSKCVGWLRRNMDPVFGWGNECRFSWGTAKEMLE 292
Query: 222 FKDIVEVLWESDEMDE 237
K V W +E ++
Sbjct: 293 LKGGARVDWPEEENEQ 308
>gi|241154557|ref|XP_002407329.1| ribonuclease HI large subunit, putative [Ixodes scapularis]
gi|215494090|gb|EEC03731.1| ribonuclease HI large subunit, putative [Ixodes scapularis]
Length = 306
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 95/249 (38%), Positives = 133/249 (53%), Gaps = 40/249 (16%)
Query: 4 EAALPKWA-SNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKR 62
++A+P A S PC++G+DEAGRGPVLGPMVYG YCP +++ L L FADSKTL EEKR
Sbjct: 17 KSAVPDVAKSYPCMLGVDEAGRGPVLGPMVYGIAYCPVEFEEDLKRLGFADSKTLTEEKR 76
Query: 63 EELFEDL-KVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILL 121
EEL + + ++S+GW V++I P + MLN +K +LN ISHDSAIGLI + L+ G+ +
Sbjct: 77 EELVGVMEQRSESLGWMVEVISPTVICNHMLNMSKYSLNAISHDSAIGLIKQALDDGVCV 136
Query: 122 TEVYLDTVGDAEKYQAKLSQ-RFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 180
TEV L E+ + L + + P ++ + GA + + R L
Sbjct: 137 TEVKL------ERPENPLHESKLPKLRHASRNTNRHAF----GARTI--IFRIALLFHRH 184
Query: 181 FEETAENM-HRNFGSGYPGD------------------------HKHIIFGFPSLVRFSW 215
FE + ++ + F G D H +FGFPSLVRFSW
Sbjct: 185 FECSTFHLSKKKFHGGRSMDCSNSLLLWGVVLLSDPATKKFLSAHVDNVFGFPSLVRFSW 244
Query: 216 GTCTSHFKD 224
T +D
Sbjct: 245 STAEKLLED 253
>gi|396458422|ref|XP_003833824.1| similar to ribonuclease hi large subunit [Leptosphaeria maculans
JN3]
gi|312210372|emb|CBX90459.1| similar to ribonuclease hi large subunit [Leptosphaeria maculans
JN3]
Length = 357
Score = 144 bits (364), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 93/246 (37%), Positives = 131/246 (53%), Gaps = 39/246 (15%)
Query: 12 SNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLA--TLNFADSKTLKEEKREELFEDL 69
S ++G+DEAGRGPVLGPMVY Y P S +L T +F DSK L + R L L
Sbjct: 56 STEVVLGVDEAGRGPVLGPMVYALFYLPLSLHHSLLADTHHFNDSKVLTADFRTSLMRTL 115
Query: 70 -----KVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEV 124
++ + GWA + +++SA ML+ + NLN + D+ I LI VL G+ +T++
Sbjct: 116 CTPSTDLHAAAGWATRSLSAQDISAHMLSPSVYNLNAQAMDATIDLIKGVLEKGVNVTDI 175
Query: 125 YLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLR-GW---- 179
Y+DT+G E YQ KL + +P+I+ V+KKADSLYPVVS AS+ AKVTRD L G+
Sbjct: 176 YIDTIGKPEIYQKKLERIWPTIRITVAKKADSLYPVVSAASVCAKVTRDAALEVGYGKYH 235
Query: 180 -------------IFEETAENMHR-----NFGSGYPGDHK---------HIIFGFPSLVR 212
+ + ++GSGYP D + +FG+ + R
Sbjct: 236 DHDHSHSQSSSTDVLNAQTQTQDPVKATVSWGSGYPSDPRTQAWLKQNMDPVFGWGTECR 295
Query: 213 FSWGTC 218
SWGT
Sbjct: 296 HSWGTA 301
>gi|440795142|gb|ELR16278.1| ribonuclease HII, putative [Acanthamoeba castellanii str. Neff]
Length = 241
Score = 144 bits (362), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 84/202 (41%), Positives = 109/202 (53%), Gaps = 13/202 (6%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVG 76
MGIDEAGRGP +GPM+Y C YCP Q+ + DSK +K +R+ LF L + VG
Sbjct: 1 MGIDEAGRGPTMGPMIYACAYCPVDKQEAYRKRGYRDSKDVKPAERDRLFAALLEDPDVG 60
Query: 77 WAVDIIDPRELS-AKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
+ I E+S A + NLNE+S+D A GL VL GI L E+Y+D +G+
Sbjct: 61 FRSGIASAEEISNANYSHTENRNLNEVSYDPATGLNRDVLATGINLAELYVDALGNC--- 117
Query: 136 QAKLSQRFPSI-KFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGS 194
A L + FPSI V+ KAD YP+VS ASIV K RD F+E + RN+G+
Sbjct: 118 -ATLQRLFPSICTIVLESKADVNYPIVSVASIVTKTLRDGITENLPFKECDITIDRNYGN 176
Query: 195 GYPGD-------HKHIIFGFPS 209
GYP +FG PS
Sbjct: 177 GYPSTPAVKDWLRNQDLFGLPS 198
>gi|256078516|ref|XP_002575541.1| ribonuclease hi large subunit [Schistosoma mansoni]
gi|353232310|emb|CCD79665.1| putative ribonuclease hi large subunit [Schistosoma mansoni]
Length = 237
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 95/209 (45%), Positives = 119/209 (56%), Gaps = 19/209 (9%)
Query: 73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
D + V +I P ++ KML+K+K +LN ISHDSAI LI VL+ G+ L EVY+DTVG A
Sbjct: 6 DWISAVVHVISPVYITEKMLDKSKTSLNVISHDSAIQLIQSVLDSGVNLVEVYVDTVGKA 65
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH-RN 191
E Y+ KL FP +K V KAD YP+VS ASI AKVTRDR L+ W EE
Sbjct: 66 EHYETKLQNLFPQLKIRVESKADDTYPIVSAASIFAKVTRDRVLQMWPKEERGSVPEGTG 125
Query: 192 FGSGYPGDH---------KHIIFGFPSLVRFSWGTCTSHF-KDIVEVLWESDEMDEDV-- 239
GSGYPGD +FGFPSLVR SW T +S + V V WE DE E+V
Sbjct: 126 LGSGYPGDPVTKSYLRACMDPVFGFPSLVRSSWSTSSSLLDQHGVSVRWEDDETHEEVLQ 185
Query: 240 -----SSRRSGKRQLKLSDIGFSSSKRRS 263
R K KLS+ F++++ +S
Sbjct: 186 AKKLARKREHSKGTCKLSNF-FNNAQSKS 213
>gi|302413253|ref|XP_003004459.1| ribonuclease H2 subunit A [Verticillium albo-atrum VaMs.102]
gi|261357035|gb|EEY19463.1| ribonuclease H2 subunit A [Verticillium albo-atrum VaMs.102]
Length = 264
Score = 140 bits (354), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 81/186 (43%), Positives = 111/186 (59%), Gaps = 11/186 (5%)
Query: 2 GSEAALPKWAS--NPCI-MGIDEAGRGPVLGPMVYGCLYCPCSYQQTL--ATLNFADSKT 56
+ +A+P+ A+ +P + +GIDEAGRGPVLGPM Y Y P L T +F DSK
Sbjct: 53 AASSAVPELAAPDSPAVCLGIDEAGRGPVLGPMTYAAFYLPMPLSDPLLRETHHFDDSKV 112
Query: 57 LKEEKREELFEDL-----KVNDSVGWAVDIIDPRELSAKMLN-KNKINLNEISHDSAIGL 110
L R L L + S G+AV + R++++ ML+ N NLN + D+ + +
Sbjct: 113 LTPAVRSALMRALCSPSTDLAASCGYAVRSLSARDIASGMLSTANPYNLNAQAFDATVEI 172
Query: 111 ITRVLNIGILLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKV 170
I V+ G+ + E+Y+DTVG YQAKL + FPS+K V+KKADSLYP VS AS+ AKV
Sbjct: 173 IKGVIARGVRVEEIYVDTVGQPAAYQAKLQRVFPSVKITVAKKADSLYPCVSAASVCAKV 232
Query: 171 TRDRTL 176
TRD L
Sbjct: 233 TRDAAL 238
>gi|342184180|emb|CCC93661.1| putative ribonuclease H [Trypanosoma congolense IL3000]
Length = 322
Score = 137 bits (346), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 91/262 (34%), Positives = 137/262 (52%), Gaps = 32/262 (12%)
Query: 13 NPCIMGIDEAGRGPVLGPMVY-GCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKV 71
N ++GIDEAGRGPV+GPMVY G + + + + DSK L E++R+ + L
Sbjct: 38 NNMVLGIDEAGRGPVIGPMVYAGAMIALHEHDRLVDYCGANDSKVLSEDQRKGVASKLNE 97
Query: 72 NDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGI-LLTEVYLDTVG 130
+ ++ P E++A M + NLN +SH A+ +I+++ G+ +L ++DTVG
Sbjct: 98 LKTFRTCTVVVTPDEIAAAMTGIHGTNLNTLSHQVAMSIISKLTLEGMGMLCAAFIDTVG 157
Query: 131 DAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHR 190
E YQ KLS RFP ++ VSKKA+ +P+V+ AS+VAK+ RD + E +
Sbjct: 158 PPETYQQKLSGRFPHLRITVSKKAELKFPIVAAASVVAKLERDSHI---------ERLGI 208
Query: 191 NFGSGYPGD---------HKHIIFGFPSL---VRFSWGTCTSHFKD---IVEVLWESDEM 235
+ GSGYP D H H F P + VR SWG D V +++E D
Sbjct: 209 DVGSGYPSDPKVMTWVRSHVHRFFVVPRVHKFVRLSWGPVVQLANDPETCVPIVFEEDAK 268
Query: 236 DEDVSSRRS-----GKRQLKLS 252
+ V ++S GK+Q LS
Sbjct: 269 SK-VEKKQSKGATDGKKQCLLS 289
>gi|336469012|gb|EGO57175.1| hypothetical protein NEUTE1DRAFT_123501 [Neurospora tetrasperma
FGSC 2508]
gi|350288681|gb|EGZ69906.1| hypothetical protein NEUTE2DRAFT_112272 [Neurospora tetrasperma
FGSC 2509]
Length = 381
Score = 137 bits (344), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 77/175 (44%), Positives = 108/175 (61%), Gaps = 10/175 (5%)
Query: 12 SNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATL--NFADSKTLKEEKREELFEDL 69
+ PC +G+DEAGRGPVLGPMVY Y P + L +F DSK L R L ++L
Sbjct: 41 NTPCCLGVDEAGRGPVLGPMVYSAFYLPLTLSDPLLKQKHSFDDSKVLTPAVRLSLMKEL 100
Query: 70 -----KVNDSVGWAVDIIDPRELSAKMLNKNKI---NLNEISHDSAIGLITRVLNIGILL 121
+++D+ G+A + P +S+ ML +K NLN+ + D+ I LI + G+ +
Sbjct: 101 CTKDTELHDNCGYATSSLSPLSISSGMLKASKAQIYNLNQQAMDATIALIKGIYERGVNV 160
Query: 122 TEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTL 176
T++++DT+G YQ KL + FP+ K V+KKADSLYPVVS AS+VAKVTRD L
Sbjct: 161 TDIFIDTIGQPAAYQKKLERVFPTAKITVAKKADSLYPVVSAASVVAKVTRDIAL 215
>gi|164422805|ref|XP_963372.2| hypothetical protein NCU09608 [Neurospora crassa OR74A]
gi|157069829|gb|EAA34136.2| hypothetical protein NCU09608 [Neurospora crassa OR74A]
Length = 381
Score = 137 bits (344), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 77/175 (44%), Positives = 108/175 (61%), Gaps = 10/175 (5%)
Query: 12 SNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATL--NFADSKTLKEEKREELFEDL 69
+ PC +G+DEAGRGPVLGPMVY Y P + L +F DSK L R L ++L
Sbjct: 41 NTPCCLGVDEAGRGPVLGPMVYSAFYLPLTLSDPLLKQKHSFDDSKVLTPAVRLSLMKEL 100
Query: 70 -----KVNDSVGWAVDIIDPRELSAKMLNKNKI---NLNEISHDSAIGLITRVLNIGILL 121
+++D+ G+A + P +S+ ML +K NLN+ + D+ I LI + G+ +
Sbjct: 101 CTKDTELHDNCGYATSSLSPLSISSGMLKASKAQIYNLNQQAMDATIALIKGIYERGVNV 160
Query: 122 TEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTL 176
T++++DT+G YQ KL + FP+ K V+KKADSLYPVVS AS+VAKVTRD L
Sbjct: 161 TDIFIDTIGQPAAYQKKLERVFPTAKITVAKKADSLYPVVSAASVVAKVTRDIAL 215
>gi|440789557|gb|ELR10864.1| ribonuclease HII, putative [Acanthamoeba castellanii str. Neff]
Length = 243
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 81/216 (37%), Positives = 113/216 (52%), Gaps = 15/216 (6%)
Query: 31 MVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGWAVDIIDPRELS-A 89
M+Y C YCP Q+ + DSK +K +R+ LF L + VG+ I+ E+S A
Sbjct: 1 MIYACAYCPVDKQEAYRKRGYRDSKDVKPAERDRLFAALLEDPDVGFRSRIVSAEEISNA 60
Query: 90 KMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQAKLSQRFPSI-KF 148
+ NLNE+S+D+A GL VL GI L E+Y+D +G+ Y+A L + FP I
Sbjct: 61 NYSHTENRNLNEVSYDAATGLNRDVLATGINLAELYVDALGNCATYRATLQRLFPGICTI 120
Query: 149 VVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGD--------- 199
VV KAD YP+VS ASIVAK RD + F+E ++RN+G+GYP
Sbjct: 121 VVESKADVNYPIVSVASIVAKTLRDGITKNLPFKECYITINRNYGNGYPSTPAVKDWLMR 180
Query: 200 HKHIIFGFPSLVRFSWGTCTSHFKD----IVEVLWE 231
+ +FG S V+F+WG D + V WE
Sbjct: 181 NLDPVFGLLSAVQFNWGPVKKALADPKNGVKRVTWE 216
>gi|336258469|ref|XP_003344047.1| hypothetical protein SMAC_08904 [Sordaria macrospora k-hell]
gi|380087310|emb|CCC14315.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 397
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 77/175 (44%), Positives = 108/175 (61%), Gaps = 10/175 (5%)
Query: 12 SNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATL--NFADSKTLKEEKREELFEDL 69
+ PC +G+DEAGRGPVLGPMVY Y P + L +F DSK L R L ++L
Sbjct: 49 NTPCCLGVDEAGRGPVLGPMVYSAFYLPLTLSDPLLKQKHSFDDSKVLTPAVRLSLMKEL 108
Query: 70 -----KVNDSVGWAVDIIDPRELSAKMLNKNK---INLNEISHDSAIGLITRVLNIGILL 121
+++D+ G+A + P +S+ ML +K NLN+ + D+ I LI + G+ +
Sbjct: 109 CTKETELHDNCGYATSSLSPLSISSGMLKASKSQIYNLNQQAMDATIELIKGIYKRGVNV 168
Query: 122 TEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTL 176
T++++DT+G YQ KL + FP+ K V+KKADSLYPVVS AS+VAKVTRD L
Sbjct: 169 TDIFIDTIGQPAAYQKKLERVFPTAKITVAKKADSLYPVVSAASVVAKVTRDIAL 223
Score = 37.7 bits (86), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 26/55 (47%), Gaps = 11/55 (20%)
Query: 187 NMHRNFGSGYPGDHK---------HIIFGFPSLVRFSWGTCTSHF--KDIVEVLW 230
N +GSGYP D K H +FG+ RFSWGT KD V+V W
Sbjct: 300 NEAMAWGSGYPSDSKCVTWLKQNMHPVFGWGPECRFSWGTAKDMLETKDGVKVDW 354
>gi|253748461|gb|EET02569.1| Ribonuclease HI, large sub [Giardia intestinalis ATCC 50581]
Length = 243
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 81/215 (37%), Positives = 111/215 (51%), Gaps = 26/215 (12%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQT--LATLNFADSKTLKEEKREELFEDLKV-- 71
I+GIDEAGRGPV GP+VYG + P QT L L DSK L + RE ++E L
Sbjct: 2 IVGIDEAGRGPVCGPLVYGIAWMPAKVYQTGILEKLGVNDSKALSADTREYIYEQLHALP 61
Query: 72 NDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGD 131
D G +I ++S ML K +LN +S ++A L+ +V + VY+D V
Sbjct: 62 KDDFGCNTAVISADQISRAMLAPRKTSLNLLSFEAARSLLYQVFT-SYEIEHVYIDLVSP 120
Query: 132 AEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRN 191
+Y A + + P++ + KAD YP+ ASIVAKVTRDR ++
Sbjct: 121 ESQYAAYIRELMPNLALTICAKADGKYPITGAASIVAKVTRDRHIKA------------Q 168
Query: 192 FGSGYPGDHK---------HIIFGFPSLVRFSWGT 217
+GSGYP D K H I+GFP+ +R SW T
Sbjct: 169 WGSGYPSDPKTKEYLDKACHSIYGFPAHIRHSWET 203
>gi|159118024|ref|XP_001709231.1| Ribonuclease HI, large sub [Giardia lamblia ATCC 50803]
gi|157437347|gb|EDO81557.1| Ribonuclease HI, large sub [Giardia lamblia ATCC 50803]
Length = 243
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 83/215 (38%), Positives = 113/215 (52%), Gaps = 26/215 (12%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQT--LATLNFADSKTLKEEKREELFEDLK--V 71
I+GIDEAGRGPV GP+VYG + P QT L L DSK L RE ++ L+
Sbjct: 2 IVGIDEAGRGPVCGPLVYGIAWMPAEVYQTGILEKLGVTDSKALSANTREHIYNRLQDLP 61
Query: 72 NDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGD 131
+ G I+ ++S ML +K +LN +S ++A L+ + L I + VY+D VG
Sbjct: 62 KEDFGCNTAIVSADQISRAMLAPHKTSLNLLSFEAARSLLYQ-LFISHEIEHVYIDLVGP 120
Query: 132 AEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRN 191
+Y A + + PSI + KAD+ YP+ ASIVAKV RDR N+
Sbjct: 121 ESQYAAYIRELMPSIALTICAKADAKYPITGAASIVAKVIRDR------------NIKPQ 168
Query: 192 FGSGYPGDHK---------HIIFGFPSLVRFSWGT 217
+GSGYP D K H I+GFP+ +R SW T
Sbjct: 169 WGSGYPSDPKTKKYLDKTCHGIYGFPTHIRHSWET 203
>gi|407835034|gb|EKF99119.1| ribonuclease H, putative [Trypanosoma cruzi]
Length = 324
Score = 133 bits (335), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 95/263 (36%), Positives = 138/263 (52%), Gaps = 32/263 (12%)
Query: 13 NPCIMGIDEAGRGPVLGPMVY-GCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKV 71
N ++GIDEAGRGPV+GPMVY G + + + L DSK L E +R+++ L+
Sbjct: 38 NHMVLGIDEAGRGPVIGPMVYTGAMIALHEHDRLLEYCGVNDSKLLGENQRKDVLCKLQK 97
Query: 72 NDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITR-VLNIGILLTEVYLDTVG 130
+ ++ P E++A M + NLN +SHD+AI +I++ L +L Y+DTVG
Sbjct: 98 LKTFSTFTVVVTPAEIAAAMTGIHGKNLNTLSHDTAIAIISKATLEATGMLCGAYIDTVG 157
Query: 131 DAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHR 190
E YQ +LS RFP ++ V+KKA++ +P+V+ AS+VAKV RDR + E +
Sbjct: 158 PPESYQQRLSGRFPHLRITVAKKAETKFPIVAAASVVAKVERDRHI---------ERLGI 208
Query: 191 NFGSGYPGD---------HKHIIFGFP---SLVRFSWGTCTSHFKDI---VEVLWESDEM 235
+ GSGYP D H H F P VR SWG K+ V +L+E D
Sbjct: 209 DVGSGYPSDPKVMTWVRSHVHRFFVLPREFDFVRLSWGPVVELAKNTDVCVPILFEEDTK 268
Query: 236 DEDVSSRRS------GKRQLKLS 252
+ R + GK+Q LS
Sbjct: 269 TKAEKKRATSGGGSDGKKQRLLS 291
>gi|303388657|ref|XP_003072562.1| ribonuclease HII [Encephalitozoon intestinalis ATCC 50506]
gi|303301703|gb|ADM11202.1| ribonuclease HII [Encephalitozoon intestinalis ATCC 50506]
Length = 239
Score = 133 bits (335), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 84/216 (38%), Positives = 116/216 (53%), Gaps = 24/216 (11%)
Query: 12 SNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKV 71
S ++GIDEAGRGPV+G MVYG L S + TL F DSK L +R + F+ +K
Sbjct: 15 SEEVVVGIDEAGRGPVIGYMVYGAL---ISSRTTLENTGFRDSKVLTSGQRHDFFKMIK- 70
Query: 72 NDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGD 131
G+ P ++ +M+ +LNEIS S + ++ + + VY+D +GD
Sbjct: 71 ERGFGYVYHCTHPDYIT-EMMQVKSTSLNEISLISVLKILEEIKAKCKKVDTVYVDALGD 129
Query: 132 AEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRN 191
EKY+A+L + +P KFV+ +KADS + +VSGASIVAKV RD + N
Sbjct: 130 CEKYKARLEEAYP-YKFVIEEKADSKFQIVSGASIVAKVQRDILI---------SQFGSN 179
Query: 192 FGSGYPGDHKHI---------IFGFPSLVRFSWGTC 218
GSGYP D I +FGFP VR+SW T
Sbjct: 180 LGSGYPSDPDTIKWLKRNANAVFGFPPGVRYSWATV 215
>gi|71408510|ref|XP_806655.1| ribonuclease H [Trypanosoma cruzi strain CL Brener]
gi|70870462|gb|EAN84804.1| ribonuclease H, putative [Trypanosoma cruzi]
Length = 324
Score = 133 bits (335), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 96/263 (36%), Positives = 140/263 (53%), Gaps = 32/263 (12%)
Query: 13 NPCIMGIDEAGRGPVLGPMVY-GCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKV 71
N ++GIDEAGRGPV+GPMVY G + + + L DSK L E +R+++ L+
Sbjct: 38 NHMVLGIDEAGRGPVIGPMVYTGAMIALHEHDRLLEYCGVNDSKLLGENQRKDVLCKLQE 97
Query: 72 NDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITR-VLNIGILLTEVYLDTVG 130
+ ++ P E++A M + NLN +SHD+AI +I++ L +L Y+DTVG
Sbjct: 98 LKTFSTFTVVVTPAEIAAAMTGIHGKNLNTLSHDTAIAIISKATLEATGMLCGAYIDTVG 157
Query: 131 DAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHR 190
E YQ +LS RFP ++ V+KKA++ +P+V+ AS+VAKV RDR + E +
Sbjct: 158 PPESYQQRLSGRFPHLRITVAKKAETKFPIVAAASVVAKVERDRHI---------ERLGI 208
Query: 191 NFGSGYPGD---------HKHIIFGFP---SLVRFSWGTCT--SHFKDI-VEVLWESDEM 235
+ GSGYP D H H F P VR SWG + KD+ V +L+E D
Sbjct: 209 DVGSGYPSDPKVMTWVRSHVHRFFVLPREFDFVRLSWGPVVELAKNKDVCVPILFEEDAK 268
Query: 236 DEDVSSRRS------GKRQLKLS 252
+ R + GK+Q LS
Sbjct: 269 TKAEKKRATSGGSSDGKKQRLLS 291
>gi|313230305|emb|CBY08009.1| unnamed protein product [Oikopleura dioica]
Length = 195
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 71/173 (41%), Positives = 102/173 (58%), Gaps = 2/173 (1%)
Query: 31 MVYGCLYCPCS-YQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGWAVDIIDPRELSA 89
MVY +C + +Q+ DSK L+E RE + + + + +G+ ++ P +S
Sbjct: 1 MVYAAAFCAITEHQKVRDECGANDSKQLEEVDRERMLKSIDKSGWIGYTGVVLPPAYISK 60
Query: 90 KMLNKNKINLNEISHDSAIGLITRVLNI-GILLTEVYLDTVGDAEKYQAKLSQRFPSIKF 148
ML + K NLNE+SHD+AI +I R ++ GI + V++DTVG EKYQ KL + FP +
Sbjct: 61 SMLRRIKYNLNEMSHDTAISMIRRAIDYHGINVKSVFVDTVGKPEKYQDKLLRYFPQLSI 120
Query: 149 VVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDHK 201
V KAD+ YP+V ASI+AKVTRD+ + W E + N GSGYPGD K
Sbjct: 121 KVESKADATYPIVGAASIIAKVTRDKLVHNWDHVEPSVNKSIEVGSGYPGDPK 173
>gi|71409033|ref|XP_806884.1| ribonuclease H [Trypanosoma cruzi strain CL Brener]
gi|70870756|gb|EAN85033.1| ribonuclease H, putative [Trypanosoma cruzi]
Length = 324
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 95/263 (36%), Positives = 137/263 (52%), Gaps = 32/263 (12%)
Query: 13 NPCIMGIDEAGRGPVLGPMVY-GCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKV 71
N ++GIDEAGRGPV+GPMVY G + + + L DSK L E +R+++ L+
Sbjct: 38 NHMVLGIDEAGRGPVIGPMVYTGAMIALHEHDRLLEYCGVNDSKLLGENQRKDVLCKLQK 97
Query: 72 NDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITR-VLNIGILLTEVYLDTVG 130
+ + P E++A M + NLN +SHD+AI +I++ L +L Y+DTVG
Sbjct: 98 LKTFSTFTVFVTPAEIAAAMTGIHGKNLNTLSHDTAIAIISKATLEATGMLCGAYIDTVG 157
Query: 131 DAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHR 190
E YQ +LS RFP ++ V+KKA++ +P+V+ AS+VAKV RDR + E +
Sbjct: 158 PPESYQQRLSGRFPHLRITVAKKAETKFPIVAAASVVAKVERDRHI---------ERLGI 208
Query: 191 NFGSGYPGD---------HKHIIFGFP---SLVRFSWGTCTSHFKDI---VEVLWESDEM 235
+ GSGYP D H H F P VR SWG K+ V +L+E D
Sbjct: 209 DVGSGYPSDPKVMTWVRSHVHRFFVLPREFDFVRLSWGPVVELAKNTDVCVPILFEEDAK 268
Query: 236 DEDVSSRRS------GKRQLKLS 252
+ R + GK+Q LS
Sbjct: 269 TKAEKKRATSGGGSDGKKQRLLS 291
>gi|396081059|gb|AFN82678.1| ribonuclease HII [Encephalitozoon romaleae SJ-2008]
Length = 239
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 81/219 (36%), Positives = 118/219 (53%), Gaps = 24/219 (10%)
Query: 9 KWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFED 68
K S ++GIDEAGRGPV+G MVYG L P + L + F DSK L +R F+
Sbjct: 12 KKISEEVVVGIDEAGRGPVVGYMVYGALVAP---KSALKSTGFKDSKVLTHAQRHTFFQT 68
Query: 69 LKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDT 128
+K +G+ P ++ +M+ +L+EIS +S ++ + + VY+D
Sbjct: 69 IK-EKGLGYVYHCTHPDYIT-EMMQLGSTSLDEISVNSVFRILDEIKAKCENVEGVYVDA 126
Query: 129 VGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENM 188
+G+ EKY+A+L +++P + FVV K+ADS + +VSGASIVAKV RD +
Sbjct: 127 LGNCEKYKARLKKKYPYM-FVVEKRADSRFQIVSGASIVAKVQRDLMI---------SEF 176
Query: 189 HRNFGSGYPGDHKHI---------IFGFPSLVRFSWGTC 218
+ GSGYP D I +FGFP VR+SW T
Sbjct: 177 GNDLGSGYPSDPSTIRWLKRNTNAVFGFPPGVRYSWSTV 215
>gi|407397482|gb|EKF27762.1| ribonuclease H, putative [Trypanosoma cruzi marinkellei]
Length = 289
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 85/218 (38%), Positives = 122/218 (55%), Gaps = 23/218 (10%)
Query: 13 NPCIMGIDEAGRGPVLGPMVY-GCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKV 71
N ++GIDEAGRGPV+GPMVY G + + + L DSK L E +R+++ L+
Sbjct: 38 NHMVLGIDEAGRGPVVGPMVYTGAMIALHEHDRLLEYCGVNDSKLLGENQRKDVLCKLQK 97
Query: 72 NDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITR-VLNIGILLTEVYLDTVG 130
+ ++ P E++A M + NLN +SHD+AIG+I++ L +L Y+DTVG
Sbjct: 98 LKTFSTFTVVVTPAEIAAAMTGIHGKNLNTLSHDTAIGIISKATLEATGMLCGAYIDTVG 157
Query: 131 DAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHR 190
E YQ +LS RFP ++ V+KKA++ +P+V+ AS+VAKV RDR + E +
Sbjct: 158 PPESYQQRLSGRFPHLRITVAKKAETKFPIVAAASVVAKVERDRHI---------ERLGI 208
Query: 191 NFGSGYPGD---------HKHIIFGFP---SLVRFSWG 216
+ GSGYP D H H F P VR SWG
Sbjct: 209 DVGSGYPSDPKVMTWVRSHVHRFFVLPREFDFVRLSWG 246
>gi|401825683|ref|XP_003886936.1| ribonuclease HII [Encephalitozoon hellem ATCC 50504]
gi|392998093|gb|AFM97955.1| ribonuclease HII [Encephalitozoon hellem ATCC 50504]
Length = 239
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 82/217 (37%), Positives = 114/217 (52%), Gaps = 24/217 (11%)
Query: 11 ASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLK 70
S ++GIDEAGRGPV+G MVYG L P + L F DSK L +R F+ +K
Sbjct: 14 TSEEVVIGIDEAGRGPVIGYMVYGALVAP---KSALEATGFRDSKVLTPAQRHCFFQMIK 70
Query: 71 VNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG 130
G+ P ++ +M+ L+ IS S ++ + + VY+DT+G
Sbjct: 71 -EKGFGYIYHCTHPDYIT-EMMQLRSTTLDRISIASVFQILDEIKTKCKKVEAVYVDTLG 128
Query: 131 DAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHR 190
D EKY++KL+ +P +FVV KKADS + VVSGASIVAKV RD +
Sbjct: 129 DCEKYKSKLNASYP-YRFVVEKKADSKFQVVSGASIVAKVQRDVLI---------SEFGN 178
Query: 191 NFGSGYPGD---------HKHIIFGFPSLVRFSWGTC 218
+ GSGYP D + +++FGFP VR+SW T
Sbjct: 179 DLGSGYPSDPDTVEWLKRNANVVFGFPPGVRYSWSTA 215
>gi|340057120|emb|CCC51462.1| putative ribonuclease H [Trypanosoma vivax Y486]
Length = 378
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 104/294 (35%), Positives = 152/294 (51%), Gaps = 42/294 (14%)
Query: 16 IMGIDEAGRGPVLGPMVY-GCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
+MGIDEAGRGP++GPMVY G + + L DSK L E +RE + + L +
Sbjct: 97 VMGIDEAGRGPIIGPMVYVGAMIALHEHDLLLTHCGANDSKVLDENQREVVLQKLSELKT 156
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRV-LNIGILLTEVYLDTVGDAE 133
+I P E++A M + INLN +SH++A +I+++ L +L Y+DTVG E
Sbjct: 157 FRTFTIVITPDEIAAAMTGIHGINLNTLSHNAATSIISQLTLQAAGMLCAAYVDTVGPPE 216
Query: 134 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG 193
KY++KLS RFP ++ VSK+A+S +P+V+ AS+VAKV RD +R + + G
Sbjct: 217 KYESKLSGRFPHLRVKVSKQAESKFPIVAAASVVAKVKRDGYIR---------RLGVDVG 267
Query: 194 SGYPGD---------HKHIIFGFP---SLVRFSWGTCTSHFKD---IVEVLWESDEMD-- 236
SGYP D H H F P + VR SW K+ + +++E D
Sbjct: 268 SGYPSDPKAVAWVRSHVHRFFMVPRKYNFVRLSWSPVMQLGKEEGVCIPLVFEEDTKTKI 327
Query: 237 EDVSSRRS--GKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 288
E +SR S GKRQ LS G + +R S + KL+ ++HF
Sbjct: 328 EKKNSRGSNDGKRQTLLS-FGKAPPRRHS-----------VYAHLLKLKMISHF 369
>gi|430812385|emb|CCJ30193.1| unnamed protein product, partial [Pneumocystis jirovecii]
Length = 242
Score = 131 bits (329), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 83/210 (39%), Positives = 110/210 (52%), Gaps = 35/210 (16%)
Query: 31 MVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGWAVDIIDPRELSAK 90
MVY YCP +Y L F+DSKTL E+R++L + L RE+S
Sbjct: 1 MVYSVAYCPQNYANILKEYGFSDSKTLTPEQRKQLMQML------------FSAREISQG 48
Query: 91 MLNKN-KINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQAKLSQRFPSIKFV 149
ML + NLN +HD+ I L+ V + EVY+DTVG + YQ KL Q FP +
Sbjct: 49 MLRPDGSYNLNAQAHDTTIQLLFEVFKRNPGIKEVYVDTVGPSSSYQIKLQQLFPQTNVI 108
Query: 150 VSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDHKHI------ 203
V++KADS+YP+VS ASI AKV+RD L A ++GSGYP D I
Sbjct: 109 VTEKADSIYPIVSTASICAKVSRDNAL------SKAAIHGESWGSGYPSDIDPITCKWLK 162
Query: 204 -----IFGFP-SLVRFSWGTCTSHFKDIVE 227
IFG+P +VR+SW T KD++E
Sbjct: 163 YSMDPIFGWPYEIVRYSWQTA----KDLLE 188
>gi|19173027|ref|NP_597578.1| BELONGS TO THE RIBONUCLEASE HII FAMILY [Encephalitozoon cuniculi
GB-M1]
gi|19168694|emb|CAD26213.1| BELONGS TO THE RIBONUCLEASE HII FAMILY [Encephalitozoon cuniculi
GB-M1]
gi|449329688|gb|AGE95958.1| ribonuclease HII family protein [Encephalitozoon cuniculi]
Length = 239
Score = 131 bits (329), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 80/213 (37%), Positives = 120/213 (56%), Gaps = 24/213 (11%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
++GIDEAGRGPV+G MVYG L P + L + F DSK L +R F+ +K
Sbjct: 18 VVVGIDEAGRGPVVGYMVYGALVVP---RGVLEDVGFKDSKVLTPAQRYNFFQMIK-KKG 73
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
G+A P ++ +M+ ++LNE+S S + ++ V + + +Y+D +GD K
Sbjct: 74 FGYAYHCSHPDYIT-EMMQVRSVSLNEVSIGSVLRILDEVQSKCRRVDTIYVDALGDCRK 132
Query: 135 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGS 194
Y+ +L + +P +FVV ++ADS + VVSGASIVAKV RD + E E++ GS
Sbjct: 133 YKERLEKDYP-YRFVVEERADSKFQVVSGASIVAKVQRD-----MLISEFGEDL----GS 182
Query: 195 GYPGDHK---------HIIFGFPSLVRFSWGTC 218
GYP D + +++FGFP VR+SW T
Sbjct: 183 GYPSDPETIRWLRKNINVVFGFPPGVRYSWATV 215
>gi|324513411|gb|ADY45510.1| Ribonuclease H2 subunit A [Ascaris suum]
Length = 190
Score = 130 bits (327), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 71/138 (51%), Positives = 86/138 (62%), Gaps = 10/138 (7%)
Query: 91 MLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQAKLSQRFPSIKFVV 150
ML + K +LNE+SH SAI LI L GI +TE+Y+DTVG YQAKL FP+I V
Sbjct: 1 MLRRCKYSLNELSHTSAINLIKFALENGINVTEIYVDTVGPKSTYQAKLQAHFPNISITV 60
Query: 151 SKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHR-NFGSGYPGDHK-------- 201
++KADSL+PVV ASI AKVTRD LR W+F E + +GSGYPGD
Sbjct: 61 TEKADSLFPVVGAASIAAKVTRDGVLRDWVFVEGDVTVPEGGYGSGYPGDPNTRKFLVTS 120
Query: 202 -HIIFGFPSLVRFSWGTC 218
+FG+ SLVRFSW T
Sbjct: 121 IDPVFGYSSLVRFSWKTA 138
>gi|308159908|gb|EFO62424.1| Ribonuclease HI, large sub [Giardia lamblia P15]
Length = 243
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 76/215 (35%), Positives = 111/215 (51%), Gaps = 26/215 (12%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQT--LATLNFADSKTLKEEKREELFEDLK--V 71
I+GIDEAGRGPV GP+VYG + P QT L L DSK L + RE ++ L
Sbjct: 2 IVGIDEAGRGPVCGPLVYGIAWMPAEVYQTGILEKLGVTDSKALSADAREHIYSKLHDLP 61
Query: 72 NDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGD 131
+ G I+ ++S ML +K +LN +S ++A L+ ++ + VY+D V
Sbjct: 62 KEDFGCNTAIVSADQISRAMLAPHKTSLNLLSFEAARSLLYQLFT-SYEIEHVYIDLVSP 120
Query: 132 AEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRN 191
+Y + + P+I + KAD+ YP+ ASI+AKVTRD+ ++
Sbjct: 121 ESQYATYIHELMPNIALTICAKADAKYPITGAASIIAKVTRDKHIK------------PQ 168
Query: 192 FGSGYPGDHK---------HIIFGFPSLVRFSWGT 217
+GSGYP D K H I+GFP+ +R SW T
Sbjct: 169 WGSGYPSDPKTKEYLDKTCHSIYGFPTHIRHSWET 203
>gi|71747398|ref|XP_822754.1| ribonuclease H [Trypanosoma brucei brucei strain 927/4 GUTat10.1]
gi|70832422|gb|EAN77926.1| ribonuclease H, putative [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
Length = 326
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 87/240 (36%), Positives = 129/240 (53%), Gaps = 26/240 (10%)
Query: 11 ASNPCIMGIDEAGRGPVLGPMVY-GCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL 69
+ N +MGIDEAGRGPV+GPMVY G + + + + DSK L E++R+ + L
Sbjct: 36 SENHLVMGIDEAGRGPVVGPMVYTGAMIALHEHDRLVDYCGANDSKVLNEDQRKSVVSKL 95
Query: 70 KVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGI-LLTEVYLDT 128
+ ++ P E++A M + NLN +SH +AI +I+++ G+ +LT Y+DT
Sbjct: 96 HELATFRTFTVVVTPDEIAAAMTGAHGTNLNTLSHQTAISIISKLTLEGMGMLTAAYVDT 155
Query: 129 VGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENM 188
VG E YQ KLS RFP ++ V+KKA+ +P+V+ AS+VAKV RD + E +
Sbjct: 156 VGPPESYQQKLSGRFPHLRVTVAKKAEIKFPIVAAASVVAKVERDSHI---------ERL 206
Query: 189 HRNFGSGYPGD---------HKHIIFGFP---SLVRFSWGTCTSHFKD---IVEVLWESD 233
+ GSGYP D H H F P + VR SW T D + +++E D
Sbjct: 207 GIDVGSGYPSDPKVMMWVRSHVHRFFVMPRECNFVRLSWAPVTQLANDPETCIPIVFEED 266
>gi|261332533|emb|CBH15528.1| ribonuclease H, putative [Trypanosoma brucei gambiense DAL972]
Length = 326
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 87/240 (36%), Positives = 129/240 (53%), Gaps = 26/240 (10%)
Query: 11 ASNPCIMGIDEAGRGPVLGPMVY-GCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL 69
+ N +MGIDEAGRGPV+GPMVY G + + + + DSK L E++R+ + L
Sbjct: 36 SENHLVMGIDEAGRGPVVGPMVYTGAMIALHEHDRLVDYCGANDSKVLNEDQRKSVVSKL 95
Query: 70 KVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGI-LLTEVYLDT 128
+ ++ P E++A M + NLN +SH +AI +I+++ G+ +LT Y+DT
Sbjct: 96 HELATFRTFTVVVTPDEIAAAMTGVHGTNLNTLSHQTAISIISKLTLEGMGMLTAAYVDT 155
Query: 129 VGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENM 188
VG E YQ KLS RFP ++ V+KKA+ +P+V+ AS+VAKV RD + E +
Sbjct: 156 VGPPESYQQKLSGRFPHLRVTVAKKAEIKFPIVAAASVVAKVERDSHI---------ERL 206
Query: 189 HRNFGSGYPGD---------HKHIIFGFP---SLVRFSWGTCTSHFKD---IVEVLWESD 233
+ GSGYP D H H F P + VR SW T D + +++E D
Sbjct: 207 GIDVGSGYPSDPKVMMWVRSHVHRFFVMPRECNFVRLSWAPVTQLANDPETCIPIVFEED 266
>gi|340501874|gb|EGR28608.1| ribonuclease large subunit, putative [Ichthyophthirius multifiliis]
Length = 258
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 85/229 (37%), Positives = 110/229 (48%), Gaps = 67/229 (29%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLN-------FADSKTLKEEKREELFED 68
+MGIDEAGRGPV+GPMVYGC P + N F DSK L EKRE LF
Sbjct: 18 VMGIDEAGRGPVIGPMVYGCCIWPITNTNNKKHENDKMENEGFNDSKALTIEKREALF-- 75
Query: 69 LKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDT 128
A+M E+ D L EVY+DT
Sbjct: 76 --------------------ARM--------QELQDDE-------------LHFEVYIDT 94
Query: 129 VGDAEKYQAKLS----QRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEET 184
VG+ E YQ KL +++P IKF V +KAD+ +PVV ASI AKV RD+ + E+
Sbjct: 95 VGNKETYQKKLENDYHKQYPQIKFCVKEKADADFPVVGAASICAKVIRDKEIENQEIEKN 154
Query: 185 AENMHRNFGSGYPGDHKHI---------IFGFPSLVRFSWGTCTSHFKD 224
+ ++ GSGYP D + +FGF ++VRFSW T + FK+
Sbjct: 155 SVSL----GSGYPSDPQTKKWLQNNFDGVFGFGNMVRFSWSTVENIFKE 199
>gi|429857939|gb|ELA32776.1| ribonuclease hi large subunit [Colletotrichum gloeosporioides Nara
gc5]
Length = 320
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 83/243 (34%), Positives = 114/243 (46%), Gaps = 39/243 (16%)
Query: 13 NPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTL--ATLNFADSKTLKEEKREELFEDL- 69
P +G+DEAGRGPVLGPMVYG + P L T +F DSK L R +L E L
Sbjct: 62 TPVCLGVDEAGRGPVLGPMVYGVFFLPIPLSDPLLRETHHFDDSKVLTPAVRSQLMEALC 121
Query: 70 ----KVNDSVGWAVDIIDPRELSAKMLNKNKI-NLNEISHDSAIGLITRVLNIGILLTEV 124
+ DS G+A+ + R+LS ML NLN + D+ + LI V G+ + E+
Sbjct: 122 TPGSDLFDSCGFAIRSLSARDLSTGMLRPGATYNLNAQAMDATVDLIKGVFARGVNVAEI 181
Query: 125 YLDTVGDAEKYQAKLSQRFPSIKFVVSKKA--DSLYPVVSGASIVAKVTRDRTLRGWIFE 182
Y+DTVG YQAKL + FP+ K V++ A + LY + +
Sbjct: 182 YVDTVGQPAAYQAKLQRFFPATKITVTRDAALEVLYRARAPEA----------------- 224
Query: 183 ETAENMHRNFGSGYPGDHK---------HIIFGFPSLVRFSWGTCTSHF--KDIVEVLWE 231
+GSGYP D + H +FG+ RFSWGT K ++V W
Sbjct: 225 -AEAEEGMAWGSGYPSDQRCVTWMRGNMHPVFGWGPECRFSWGTAKDMLEAKGSLKVEWP 283
Query: 232 SDE 234
D+
Sbjct: 284 VDD 286
>gi|300702211|ref|XP_002995135.1| hypothetical protein NCER_102091 [Nosema ceranae BRL01]
gi|239603960|gb|EEQ81464.1| hypothetical protein NCER_102091 [Nosema ceranae BRL01]
Length = 235
Score = 120 bits (301), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 79/211 (37%), Positives = 111/211 (52%), Gaps = 28/211 (13%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I+G+DEAGRGPV+G MVY C ++ N DSK L E+ R ++F LK
Sbjct: 19 IVGVDEAGRGPVIGYMVY----CVMVFEVDNVPKNLKDSKMLTEKMRNDIFVTLK---DY 71
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
+A + P ++ KML+ +NLN+IS ++ + L+ V N + +++D +G +K
Sbjct: 72 NYAYTALHPSYITTKMLSN--VNLNDISWNTVLNLLKLVCNAYTNIEGIFIDAIGTCDKL 129
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 195
+ L K V KADS YPVVSGASIVAKVTRD L + +FGSG
Sbjct: 130 KEFLELNIKH-KCTVESKADSKYPVVSGASIVAKVTRDDLL---------SKFNISFGSG 179
Query: 196 YPGD---------HKHIIFGFPSLVRFSWGT 217
YP D + IFG+ VR++W T
Sbjct: 180 YPSDPVTKKWLTKEVNYIFGWGKSVRYTWNT 210
>gi|70926382|ref|XP_735739.1| ribonuclease H1 large subunit [Plasmodium chabaudi chabaudi]
gi|56509666|emb|CAH81806.1| ribonuclease H1 large subunit, putative [Plasmodium chabaudi
chabaudi]
Length = 133
Score = 120 bits (301), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 62/117 (52%), Positives = 81/117 (69%), Gaps = 5/117 (4%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV- 75
+GIDEAGRGPVLGPMVY YC ++ L + DSK + E RE++F K+N+S
Sbjct: 19 LGIDEAGRGPVLGPMVYSGFYCKKEDEKLLKEMKIDDSKKISENDREKMF--YKLNNSTL 76
Query: 76 --GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG 130
GW V ++ P+++SAKML K K NLNEISHD+AI +I VL+ G LTEV++DTVG
Sbjct: 77 PFGWRVHVLMPQDISAKMLKKQKYNLNEISHDTAISIIQHVLSRGCNLTEVFVDTVG 133
>gi|149037819|gb|EDL92179.1| ribonuclease H2, large subunit, isoform CRA_c [Rattus norvegicus]
gi|149037822|gb|EDL92182.1| ribonuclease H2, large subunit, isoform CRA_c [Rattus norvegicus]
Length = 158
Score = 120 bits (301), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 57/111 (51%), Positives = 75/111 (67%), Gaps = 1/111 (0%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVN- 72
PC++G+DEAGRGPVLGPMVY YCP S L L ADSKTL E +RE LF ++ +
Sbjct: 28 PCVLGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLTENERERLFAKMEEDG 87
Query: 73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTE 123
D VGWA+DI+ P +S ML + K NLN +SHD+A GLI ++ + +T+
Sbjct: 88 DFVGWALDILSPNLISTSMLGRVKYNLNSMSHDTAAGLIQHAMDQNVKVTQ 138
>gi|449691976|ref|XP_004212862.1| PREDICTED: ribonuclease H2 subunit A-like, partial [Hydra
magnipapillata]
Length = 127
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 61/124 (49%), Positives = 79/124 (63%), Gaps = 12/124 (9%)
Query: 124 VYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEE 183
+Y+DTVGDA KYQ KLS+ F + V+ KAD+L+P+VS ASI AKV RDR ++GW F E
Sbjct: 1 MYVDTVGDASKYQNKLSEVFDGVSVKVTPKADALFPIVSAASICAKVARDRCIQGWQFPE 60
Query: 184 TAENMHRNFGSGYPGDHK---------HIIFGFPSLVRFSWGTCTSHF-KDIVEVLWESD 233
++ ++GSGYP D K +FGFP VRFSW TC + K EV+WE D
Sbjct: 61 G--DIKEDYGSGYPADPKTKQWLKDVVDPVFGFPQFVRFSWSTCVNILEKHACEVMWEDD 118
Query: 234 EMDE 237
E +E
Sbjct: 119 EAEE 122
>gi|320591391|gb|EFX03830.1| ribonuclease hi large subunit [Grosmannia clavigera kw1407]
Length = 304
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 74/193 (38%), Positives = 101/193 (52%), Gaps = 24/193 (12%)
Query: 54 SKTLKEEKREELFEDL-----KVNDSVGWAVDIIDPRELSAKMLNKNKI---NLNEISHD 105
S L + R L L ++ S GWA + R++ A ML NLN + D
Sbjct: 44 SPVLSADTRASLMAALCRPGSSLHRSCGWATAALSARDIGADMLAPASAAGSNLNAQAAD 103
Query: 106 SAIGLITRVLNIGILLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGAS 165
+ + LI VL G+ +T+VY+DTVG YQ KL + FP ++ V+KKADSLYP VS AS
Sbjct: 104 ATVALIRGVLARGVRVTDVYVDTVGPPATYQKKLERVFPGLRITVAKKADSLYPCVSAAS 163
Query: 166 IVAKVTRDRTLRGWIFEE--TAENMHRNFGSGYPGDHK---------HIIFGFPSLVRFS 214
+ AKVTRD L ++ A ++GSGYP D + H +FG+ RFS
Sbjct: 164 VCAKVTRDVAL-AVLYRRYGAASASEPDWGSGYPSDGRCTAWLRRNIHPVFGWGPECRFS 222
Query: 215 WGTCTSHFKDIVE 227
WGT KD++E
Sbjct: 223 WGTA----KDLLE 231
>gi|146103342|ref|XP_001469539.1| putative ribonuclease H [Leishmania infantum JPCM5]
gi|134073909|emb|CAM72648.1| putative ribonuclease H [Leishmania infantum JPCM5]
Length = 316
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 73/209 (34%), Positives = 107/209 (51%), Gaps = 20/209 (9%)
Query: 16 IMGIDEAGRGPVLGPMVY-GCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
++GI EAGRG V+GP+ Y G + + + + ADSKTL E +R + L++ +
Sbjct: 46 VLGIGEAGRGSVIGPIFYTGAVISLGEHDDLVRLCHVADSKTLDERRRLASLQQLRLLKT 105
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITR-VLNIGILLTEVYLDTVGDAE 133
+ P E+S + ++ NLN +SH++AI +I++ L L Y+ T G
Sbjct: 106 FRSFTVCVSPEEISKTITGRSGRNLNTLSHETAIQIISKATLASAGKLCAAYVGTAGPPA 165
Query: 134 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG 193
YQ +L+ RFP ++ V+KKADS +P+VS ASIVAK TRD + E + N G
Sbjct: 166 TYQERLAGRFPHLRVTVAKKADSQFPIVSAASIVAKTTRDTAI---------EALGENIG 216
Query: 194 SGYPGD---------HKHIIFGFPSLVRF 213
S P D H H F FP F
Sbjct: 217 SRCPSDPRTMERLRSHVHRFFVFPHAYDF 245
>gi|401419840|ref|XP_003874409.1| putative ribonuclease H [Leishmania mexicana MHOM/GT/2001/U1103]
gi|322490645|emb|CBZ25907.1| putative ribonuclease H [Leishmania mexicana MHOM/GT/2001/U1103]
Length = 316
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 88/256 (34%), Positives = 123/256 (48%), Gaps = 30/256 (11%)
Query: 16 IMGIDEAGRGPVLGPMVY-GCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
++GIDEAGRG V+GPMVY G + + + + + AD K R + L+ +
Sbjct: 46 VLGIDEAGRGSVIGPMVYTGAVISLGEHDELVRLCHVADRKMPNVRPRLASLQKLRQLKT 105
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITR-VLNIGILLTEVYLDTVGDAE 133
+ E+S M N NLN +SH++AI +I+ L L Y+DTVG
Sbjct: 106 FRSFTVFVSSEEISNTMAGHNGRNLNALSHETAIQIISEATLASAGKLCAAYVDTVGPPG 165
Query: 134 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG 193
YQA+L+ RFP ++ V+KKA+S +P+VS AS+VAK RD + E + N G
Sbjct: 166 TYQARLAGRFPHLRVTVAKKAESKFPIVSAASVVAKTARDAAI---------EALGENIG 216
Query: 194 SGYPGDHK---------HIIFGFPSL---VRFSWGTCTSHFKD---IVEVLWESDEMDED 238
SGY D + H F F VR SWG D V V++E D E+
Sbjct: 217 SGYLIDPRTMAWLRSPVHRCFAFSHAYDSVRQSWGPVVQLANDSAVCVPVVFEQDP--EE 274
Query: 239 VSSRRSG--KRQLKLS 252
S + G RQ LS
Sbjct: 275 ASQQGGGGDNRQQNLS 290
>gi|429962741|gb|ELA42285.1| ribonuclease HII [Vittaforma corneae ATCC 50505]
Length = 232
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 79/211 (37%), Positives = 114/211 (54%), Gaps = 32/211 (15%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+ GIDEAGRGPV+GPMVYG LY + + ++ DSK L RE F++++
Sbjct: 20 MAGIDEAGRGPVVGPMVYG-LYVASENEIS----HYKDSKLLTPVAREHFFKNMR----- 69
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
++ I P +S+ M +NLNEI+ ++ I L+ +++ + VY+D +G+ E+Y
Sbjct: 70 NYSCYKIHPAYISSHM-EAGSMNLNEIAKEAVIYLLKDLVSKCPNVKTVYIDGLGNNEEY 128
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 195
+ L + F S+ FV+ KADS Y VVSGASIVAKV RD ++ + N GSG
Sbjct: 129 KKTLKKYF-SLNFVIENKADSKYQVVSGASIVAKVVRDASVARY-----------NCGSG 176
Query: 196 YPGD---------HKHIIFGFPSLVRFSWGT 217
Y D + GFP VR SW T
Sbjct: 177 YTSDPITKEWLKSKYNKFLGFPDYVRHSWST 207
>gi|169806222|ref|XP_001827856.1| ribonuclease HII [Enterocytozoon bieneusi H348]
gi|161779304|gb|EDQ31327.1| ribonuclease HII [Enterocytozoon bieneusi H348]
Length = 252
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 79/233 (33%), Positives = 113/233 (48%), Gaps = 42/233 (18%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
I+GIDEAGRGPV+GPMVY Y + ++ + F DSK L R+ + +
Sbjct: 14 VIVGIDEAGRGPVIGPMVYAA-YVMHTNERRIRQ--FIDSKQLTPNTRKNYYATM----- 65
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
+ +A +I+P ++ M N K NLN+I+ ++ + L+ + N + VY+D +G+
Sbjct: 66 MNFAYIVIEPIYITTYMNNHIK-NLNQIAEEAVVQLLNEINNKCKNVKMVYIDALGNVSN 124
Query: 135 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF-- 192
Y+ L F F + KAD+ Y VVS ASIVAK+ RD F N+H N+
Sbjct: 125 YKKNLQAHF-KFNFTIEAKADATYEVVSAASIVAKINRDA-----FFSSKTNNIHENYYT 178
Query: 193 ----------------GSGYPG---------DHKHIIFGFPSLVRFSWGTCTS 220
GSGYP D+ H I GF S+VR SW T S
Sbjct: 179 KLGYEELTSIKDFNHCGSGYPSDPHTQQWLKDNFHPISGFNSIVRHSWSTIQS 231
>gi|47213807|emb|CAF92580.1| unnamed protein product [Tetraodon nigroviridis]
Length = 157
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 62/148 (41%), Positives = 83/148 (56%), Gaps = 21/148 (14%)
Query: 94 KNKINLNEISHDSAIGLIT------------RVLNIGILLTEVYLDTVGDAEKYQAKLSQ 141
+ K NLN +SHD+AIGL+ R + ++V++DTVG AEKY+ KLS+
Sbjct: 6 RTKYNLNALSHDTAIGLVQYALDSLESSSKRRTMFSCPSGSQVFVDTVGPAEKYEDKLSK 65
Query: 142 RFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDHK 201
FP + V KADSL+P+VS ASI AKV RD ++ W F E ++GSGYP D K
Sbjct: 66 IFPGVNVTVRPKADSLFPIVSAASICAKVARDHAVKHWRFAEELGEADTDYGSGYPNDPK 125
Query: 202 ---------HIIFGFPSLVRFSWGTCTS 220
+FG+P VRFSW T +
Sbjct: 126 TKAWLLRYLDPVFGYPQFVRFSWSTAQT 153
>gi|398024050|ref|XP_003865186.1| ribonuclease H, putative [Leishmania donovani]
gi|322503423|emb|CBZ38508.1| ribonuclease H, putative [Leishmania donovani]
Length = 316
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 73/209 (34%), Positives = 103/209 (49%), Gaps = 20/209 (9%)
Query: 16 IMGIDEAGRGPVLGPMVY-GCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
++GI EAGRG V+GP+ Y G + + + + ADSKTL E +R + L + +
Sbjct: 46 VLGIGEAGRGSVIGPIFYTGAVISLGEHDDLVQLCHVADSKTLDERRRLASLQQLHLLKT 105
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITR-VLNIGILLTEVYLDTVGDAE 133
+ P E S + ++ NLN +SH++AI +I+ L L Y+ T G
Sbjct: 106 FRSFTVCVSPEEFSKTITGRSGRNLNTLSHETAIQIISEATLASAGKLCAAYVGTAGPPA 165
Query: 134 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG 193
YQ L+ RFP ++ V+KKADS +P+VS ASIVAK TRD + E + N G
Sbjct: 166 TYQEGLAGRFPHLRVTVAKKADSQFPIVSAASIVAKTTRDTAI---------EALGENIG 216
Query: 194 SGYPGD---------HKHIIFGFPSLVRF 213
S P D H H F FP F
Sbjct: 217 SSCPSDPRTMERLRSHVHRFFVFPHAYDF 245
>gi|164655636|ref|XP_001728947.1| hypothetical protein MGL_3941 [Malassezia globosa CBS 7966]
gi|159102835|gb|EDP41733.1| hypothetical protein MGL_3941 [Malassezia globosa CBS 7966]
Length = 269
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 65/173 (37%), Positives = 94/173 (54%), Gaps = 35/173 (20%)
Query: 91 MLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQAKLSQRFP---SIK 147
ML + NLN+ S D+ + LI VLN G+ +T++++DTVG+ Y AKL Q FP I+
Sbjct: 1 MLRRIPHNLNQQSCDATVHLIQGVLNSGVDVTKIFVDTVGEPNAYAAKLKQYFPRHSHIE 60
Query: 148 FVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHR----------------- 190
++V++KAD+ YP+V ASI AKVTRD + W++ E +++H
Sbjct: 61 WIVARKADATYPIVGAASIAAKVTRDACVDHWMYAEPLQSVHHPEISKSSGKRKRGNNDD 120
Query: 191 ------NFGSGYPGDHKHI---------IFGFPSLVRFSWGTCTSHFKDIVEV 228
GSGYPGD K + +FG+ LVRFSW T S ++ V V
Sbjct: 121 EETDIWATGSGYPGDPKTVRYLKETLDPVFGWARLVRFSWATAKSMLEEPVHV 173
>gi|148673842|gb|EDL05789.1| mCG129830, isoform CRA_b [Mus musculus]
Length = 142
Score = 114 bits (284), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 55/109 (50%), Positives = 73/109 (66%), Gaps = 1/109 (0%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVN-DS 74
++G+DEAGRGPVLGPMVY YCP S L L ADSKTL E +RE LF ++ + D
Sbjct: 1 VLGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLTENERERLFAKMEEDGDF 60
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTE 123
VGWA+D++ P +S ML + K NLN +SHD+A GLI L+ + +T+
Sbjct: 61 VGWALDVLSPNLISTSMLGRVKYNLNSLSHDTAAGLIQYALDQNVNVTQ 109
>gi|444526357|gb|ELV14308.1| Ribonuclease H2 subunit A [Tupaia chinensis]
Length = 244
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 58/133 (43%), Positives = 79/133 (59%), Gaps = 10/133 (7%)
Query: 115 LNIGILLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDR 174
L+ T V++DTVG + YQ +L QRFP I+ V KAD+L+PVVS ASI AKV RD+
Sbjct: 74 LDTPTWPTMVFVDTVGLPDTYQERLQQRFPGIEVTVKAKADALFPVVSAASICAKVARDQ 133
Query: 175 TLRGWIFEETAENMHRNFGSGYPGD-------HKHI--IFGFPSLVRFSWGTCTSHF-KD 224
++ W F E +++ ++GSGYP D KH+ +FGFP VRFSW T + K+
Sbjct: 134 AVKNWQFVEELQDLDVDYGSGYPNDPKTKSWLKKHVDPVFGFPQFVRFSWRTAQAILEKE 193
Query: 225 IVEVLWESDEMDE 237
V WE +E
Sbjct: 194 AEAVTWEDSSPEE 206
>gi|238490075|ref|XP_002376275.1| ribonuclease HI large subunit [Aspergillus flavus NRRL3357]
gi|220698663|gb|EED55003.1| ribonuclease HI large subunit [Aspergillus flavus NRRL3357]
Length = 273
Score = 110 bits (276), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 72/193 (37%), Positives = 105/193 (54%), Gaps = 25/193 (12%)
Query: 73 DSVGWAVDIIDPRELSAKMLNKNK--INLNEISHDSAIGLITRVL-NIGILLTEVYLDTV 129
+S GWA ++ R++S+ M+ NLN + D+ + LI ++ + + EVY+DT+
Sbjct: 54 ESCGWATKLLSARDISSGMMRPGAGVYNLNAQAMDATVELIREIVEGRKVDIREVYIDTI 113
Query: 130 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTL--------RGWIF 181
G+ YQ KL + FPS+K V+KKADSLYP VS AS+ AKVTRD L + F
Sbjct: 114 GNPATYQQKLERIFPSLKITVAKKADSLYPCVSAASVAAKVTRDVALELCHEDIVKAQQF 173
Query: 182 EETAENMH-RNFGSGYPGDHKHI---------IFGFPSLVRFSWGTCTS--HFKDIVEVL 229
++ ++ ++GSGYP D K + IFG+ + RFSWGT K V+V
Sbjct: 174 DDPSQATSTESWGSGYPSDSKCVGWLRRNMDPIFGWGNECRFSWGTSKEMLEMKGGVKVD 233
Query: 230 WESDEMDEDVSSR 242
W D DE+ R
Sbjct: 234 WPPD--DENTQLR 244
>gi|317765021|ref|NP_001187891.1| ribonuclease h2 subunit a [Ictalurus punctatus]
gi|308324252|gb|ADO29261.1| ribonuclease h2 subunit a [Ictalurus punctatus]
Length = 108
Score = 110 bits (276), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 55/107 (51%), Positives = 71/107 (66%), Gaps = 1/107 (0%)
Query: 31 MVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL-KVNDSVGWAVDIIDPRELSA 89
MVYG +CP S ++ L L ADSKTL E +RE LF L K VGWA+ I+ P +S
Sbjct: 1 MVYGICFCPVSRKENLKNLKVADSKTLSEAERENLFLKLDKAKGFVGWALQILSPNTIST 60
Query: 90 KMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQ 136
ML + K NLN +SHD+AIGL+ L+ G+ L EV++DTVG AEKY+
Sbjct: 61 SMLQRAKYNLNALSHDAAIGLVQYALDCGVQLKEVFVDTVGPAEKYE 107
>gi|300175421|emb|CBK20732.2| unnamed protein product [Blastocystis hominis]
Length = 174
Score = 110 bits (276), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 61/147 (41%), Positives = 89/147 (60%), Gaps = 15/147 (10%)
Query: 102 ISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQAKLSQ--RFPSIKFVVSKKADSLYP 159
+SH++AI +I+ +L + + ++EVY+DTVG A KY+AKL+Q F +IKF V+ KADSLY
Sbjct: 1 MSHNAAISMISELLRMKVRVSEVYIDTVGPAAKYEAKLNQTFNFTNIKFKVAPKADSLYK 60
Query: 160 VVSGASIVAKVTRDRTLRGWIFEETA--ENMHRNFGSGYPGDHKHI---------IFGFP 208
VS ASIVAK RD + +EE + + GSGYP D + +FGFP
Sbjct: 61 CVSAASIVAKTHRDAIIEQHPWEEPCMQDRLIGKLGSGYPSDPMTVQFLESVMDPVFGFP 120
Query: 209 SLVRFSWGTCTSHF--KDIVEVLWESD 233
+ +RFSW T + K V+W+++
Sbjct: 121 TFIRFSWSTASRMLQEKQAAPVIWKNE 147
>gi|261402294|ref|YP_003246518.1| ribonuclease HII [Methanocaldococcus vulcanius M7]
gi|261369287|gb|ACX72036.1| ribonuclease HII [Methanocaldococcus vulcanius M7]
Length = 233
Score = 110 bits (274), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 80/227 (35%), Positives = 112/227 (49%), Gaps = 38/227 (16%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I+G+DEAGRGPVLGPMV + L L DSK L + KR +L + L + +
Sbjct: 5 IVGVDEAGRGPVLGPMVVCAFAIEKDREDLLRDLGVKDSKLLSKSKRSQLKKQL---ERI 61
Query: 76 GWAVDIIDPRELSAKMLNK--NKINLNEISHDS----AIGLITRVLNIGILLTEVYLDTV 129
G+ + + L+A +N NKINLNEI ++ +GLI LN+ E+Y+D
Sbjct: 62 GY----VKKKILTANEINTLMNKINLNEIEINAFSEVIMGLIND-LNLKDEYLEIYVDAC 116
Query: 130 G-DAEKYQAKLSQRFP--------SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 180
+A+K++ +L R IK + KAD YP+VS ASI+AK RD +
Sbjct: 117 STNAKKFENELKNRIKDIENQKNLKIKVIAEHKADLKYPIVSSASIIAKADRDEII---- 172
Query: 181 FEETAENMHRNFGSGYPGDHKHIIF---------GFPSLVRFSWGTC 218
E + + GSGYP D K I F P++ R W TC
Sbjct: 173 --EQYKKKYGEIGSGYPSDPKTIKFLEKYFEEYGSLPNIARVHWKTC 217
>gi|45358937|ref|NP_988494.1| ribonuclease HII [Methanococcus maripaludis S2]
gi|73917612|sp|Q6LXH7.1|RNH2_METMP RecName: Full=Ribonuclease HII; Short=RNase HII
gi|45047803|emb|CAF30930.1| Ribonuclease HII [Methanococcus maripaludis S2]
Length = 242
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 83/229 (36%), Positives = 113/229 (49%), Gaps = 32/229 (13%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
I+G+DEAGRGPVLGPMV + L L DSK L ++KREEL+ + +N+
Sbjct: 22 IIVGLDEAGRGPVLGPMVIASVKIDEKNLYKLNDLELKDSKQLSKKKREELY--IIINEM 79
Query: 75 VGWAVDIIDPRELSAKM--LNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
+IDP + +M +N NKI L+ S S I NI I Y+D +
Sbjct: 80 CDVEKIVIDPETIDKQMEIINLNKIELSAFSKLSN-HFIRENDNISI-----YIDACSSS 133
Query: 133 E-----KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAEN 187
E +++AKL + +++ + KAD Y +VS ASI+AKVTRDR + EE E
Sbjct: 134 EQSFSNQFKAKLINK--NVEIIAEHKADENYKIVSAASIIAKVTRDR-----VIEEYKET 186
Query: 188 MHRNFGSGYPGDHKHIIF---------GFPSLVRFSWGTCTSHFKDIVE 227
GSGYP D K F P + R SW T + K+I E
Sbjct: 187 FGE-IGSGYPSDPKTKKFLKNYVYENRTLPKIARKSWATSKNLLKEIEE 234
>gi|150402543|ref|YP_001329837.1| ribonuclease HII [Methanococcus maripaludis C7]
gi|189043625|sp|A6VGW0.1|RNH2_METM7 RecName: Full=Ribonuclease HII; Short=RNase HII
gi|150033573|gb|ABR65686.1| ribonuclease HII [Methanococcus maripaludis C7]
Length = 239
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 80/232 (34%), Positives = 118/232 (50%), Gaps = 38/232 (16%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
I+G+DEAGRGPV+GPMV + + L L DSK L ++KREEL+ +K+++
Sbjct: 19 IIVGLDEAGRGPVIGPMVIASVKINENDLPKLHDLGLKDSKQLTKKKREELY--IKISEI 76
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTE---VYLDTVGD 131
+IDP ++ +M INLN+I +G +++ N I E +Y+D
Sbjct: 77 CDVKKIVIDPEKIDEQM---EIINLNKIE----LGAFSKLANHFIKENENISIYIDACSS 129
Query: 132 AEK-----YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW--IFEET 184
E+ ++AKL + +++ + KAD Y +VS ASI+AKVTRD + + IF E
Sbjct: 130 NEQSFSNQFKAKLINK--NVEIIAEHKADENYKIVSAASIIAKVTRDNVIEEYKEIFGE- 186
Query: 185 AENMHRNFGSGYPGDHKHIIF---------GFPSLVRFSWGTCTSHFKDIVE 227
GSGYP D K F G P + R SW T + K+I E
Sbjct: 187 -------IGSGYPSDPKTKKFLKNYVHENKGLPKIARKSWATSKNLLKEIEE 231
>gi|340624684|ref|YP_004743137.1| ribonuclease HII [Methanococcus maripaludis X1]
gi|339904952|gb|AEK20394.1| ribonuclease HII [Methanococcus maripaludis X1]
Length = 242
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 83/229 (36%), Positives = 113/229 (49%), Gaps = 32/229 (13%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
I+G+DEAGRGPVLGPMV + L L DSK L ++KREEL+ + +N+
Sbjct: 22 IIVGLDEAGRGPVLGPMVIASVKIDEKNLYKLNDLELKDSKQLSKKKREELY--IIINEM 79
Query: 75 VGWAVDIIDPRELSAKM--LNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
+IDP + +M +N NKI L+ S S I NI I Y+D +
Sbjct: 80 CDVEKIVIDPETIDNQMEIINLNKIELSAFSKLSN-HFIRENDNISI-----YIDACSSS 133
Query: 133 E-----KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAEN 187
E +++AKL + +++ + KAD Y +VS ASI+AKVTRDR + EE E
Sbjct: 134 EQSFSNQFKAKLINK--NVEIIAEHKADENYKIVSAASIIAKVTRDR-----VIEEYKET 186
Query: 188 MHRNFGSGYPGDHKHIIF---------GFPSLVRFSWGTCTSHFKDIVE 227
GSGYP D K F P + R SW T + K+I E
Sbjct: 187 FGE-IGSGYPSDPKTKKFLKNYVYENRTLPKIARKSWATSKNLLKEIEE 234
>gi|159905682|ref|YP_001549344.1| ribonuclease HII [Methanococcus maripaludis C6]
gi|238686969|sp|A9A9T9.1|RNH2_METM6 RecName: Full=Ribonuclease HII; Short=RNase HII
gi|159887175|gb|ABX02112.1| ribonuclease HII [Methanococcus maripaludis C6]
Length = 239
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 77/227 (33%), Positives = 111/227 (48%), Gaps = 22/227 (9%)
Query: 12 SNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKV 71
S I+G+DEAGRGPV+GPMV + L L DSK L ++KREEL+ +K+
Sbjct: 16 SGKIIVGLDEAGRGPVIGPMVIASVKINEKDLYKLQDLGLKDSKQLSKKKREELY--VKI 73
Query: 72 NDSVGWAVDIIDPRELSAKM--LNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 129
++ +I P ++ +M N NKI L+ S A I NI I + +
Sbjct: 74 SEICNVKKIVIAPEKIDEQMEITNLNKIELSAFSK-LANHFIKENENISIYIDACSSNEQ 132
Query: 130 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH 189
+ +++AKL + +++ + KAD Y +VS ASI+AKVTRD + E +
Sbjct: 133 SFSNQFKAKLINK--NVEIIAEHKADENYKIVSAASIIAKVTRDNVI------EEYKKTF 184
Query: 190 RNFGSGYPGDHKHIIF---------GFPSLVRFSWGTCTSHFKDIVE 227
GSGYP D K F G P + R SW T + K+I E
Sbjct: 185 GEIGSGYPSDPKTKKFLKKYVHENKGLPKIARKSWATSKNLLKEIEE 231
>gi|150401039|ref|YP_001324805.1| ribonuclease HII [Methanococcus aeolicus Nankai-3]
gi|189043622|sp|A6UUM1.1|RNH2_META3 RecName: Full=Ribonuclease HII; Short=RNase HII
gi|150013742|gb|ABR56193.1| ribonuclease HII [Methanococcus aeolicus Nankai-3]
Length = 277
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 78/244 (31%), Positives = 111/244 (45%), Gaps = 43/244 (17%)
Query: 12 SNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKV 71
+N I+G+DEAGRGPVLGPMV + + L+ DSK + +REELFE +
Sbjct: 18 NNKLIIGLDEAGRGPVLGPMVIALVKIKGQDLKNFEKLDIKDSKKHSKNRREELFEMIIN 77
Query: 72 NDSVGWAVDIIDPRELSAKMLNK--NKINLNEISHDSAIGLITRVL-------------N 116
N V + + L AK ++K N INLN+I + LI VL
Sbjct: 78 NYDVRYEI-------LEAKTIDKLMNTINLNKIELMAFTKLINSVLKEEYPNYKENSKIQ 130
Query: 117 IGILLTEVYLDTVGDAEK-YQAKLSQRF-----PSIKFVVSKKADSLYPVVSGASIVAKV 170
E+Y+D EK + ++ + +IK + KAD Y +VS ASI+AKV
Sbjct: 131 TATPQIEIYIDACSSNEKAFANQIKSKLIVNDENNIKIIAEHKADENYKIVSAASIIAKV 190
Query: 171 TRDRTLRGWIFEETAENMHRNFGSGYPGD---HKHIIF------GFPSLVRFSWGTCTSH 221
RDR + + + ++ GSGYP D K++ P + R SW T
Sbjct: 191 IRDRKIEEY------KKIYGEIGSGYPSDKITQKYLANYVEKNRELPEIARKSWNTSKKL 244
Query: 222 FKDI 225
K I
Sbjct: 245 LKKI 248
>gi|336476394|ref|YP_004615535.1| ribonuclease HII [Methanosalsum zhilinae DSM 4017]
gi|335929775|gb|AEH60316.1| ribonuclease HII [Methanosalsum zhilinae DSM 4017]
Length = 217
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 76/227 (33%), Positives = 116/227 (51%), Gaps = 35/227 (15%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDEAG+GPV+GPM + S T+ L DSKT+ KR+E +K S
Sbjct: 4 IAGIDEAGKGPVIGPMCIAGVAIDESKLNTIKNLKVRDSKTVTASKRKEFAYQIK-KYSD 62
Query: 76 GWAVDIIDPRELSA--KMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG-DA 132
W + I P+++ K++ N+I ++ G + +VLN + + Y+D+V ++
Sbjct: 63 DWYIFEISPQQIDELRKVMTMNQIMVH--------GFL-KVLN-KLRPDKAYVDSVDVNS 112
Query: 133 EKYQAKLSQRF-------PSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETA 185
E++ + L ++ I+ + +ADS+YP+VS ASI+AKV RD + E+
Sbjct: 113 ERFGSTLKIKYSESNPGAKQIEIISKHRADSIYPIVSAASIIAKVRRDE-----LIEKIK 167
Query: 186 ENMHRNFGSGYPGDHKHIIF---------GFPSLVRFSWGTCTSHFK 223
+ M +FGSGYP D K F FP VR SW TC + K
Sbjct: 168 KEMGIDFGSGYPSDPKTKKFLEEWICENDSFPEFVRHSWKTCDNLIK 214
>gi|134045249|ref|YP_001096735.1| ribonuclease HII [Methanococcus maripaludis C5]
gi|189043624|sp|A4FWE5.1|RNH2_METM5 RecName: Full=Ribonuclease HII; Short=RNase HII
gi|132662874|gb|ABO34520.1| RNase HII [Methanococcus maripaludis C5]
Length = 239
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 77/230 (33%), Positives = 114/230 (49%), Gaps = 34/230 (14%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
I+G+DEAGRGPV+GPMV + L L DSK L ++KREEL+ K+++
Sbjct: 19 IIVGLDEAGRGPVIGPMVIASVKINEKDLPRLDDLGLRDSKQLSKKKREELY--TKISEI 76
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTE---VYLDTVGD 131
+I+P ++ +M INLN+I +G +++ N I E +Y+D
Sbjct: 77 CDVKKVVINPEKIDEQM---EIINLNKIE----LGAFSKLANHFIKENENISIYIDACSS 129
Query: 132 AEK-----YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAE 186
E+ ++AKL + +++ + KAD Y +VS ASI+AKVTRD + E +
Sbjct: 130 NEQSFSNQFKAKLINK--NVEIIAEHKADENYKIVSAASIIAKVTRDNVI------EEYK 181
Query: 187 NMHRNFGSGYPGDHKHIIF---------GFPSLVRFSWGTCTSHFKDIVE 227
GSGYP D K F G P + R SW T + K+I E
Sbjct: 182 KTFGEIGSGYPSDPKTKKFLKNYVHENKGLPKIARKSWATSKNLLKEIEE 231
>gi|147920602|ref|YP_685601.1| ribonuclease H (RNase H) [Methanocella arvoryzae MRE50]
gi|121688011|sp|Q0W5R8.1|RNH2_UNCMA RecName: Full=Ribonuclease HII; Short=RNase HII
gi|110620997|emb|CAJ36275.1| ribonuclease H (RNase H) [Methanocella arvoryzae MRE50]
Length = 224
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 74/223 (33%), Positives = 110/223 (49%), Gaps = 25/223 (11%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
IMGIDEAGRGPV+GP+V + + + DSK L +KREE LK +
Sbjct: 9 IMGIDEAGRGPVIGPLVVCGIIVEEKDLPAIEAMGLKDSKKLSAKKREEFAAALK--NKY 66
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG-DAEK 134
+ + ++ P+E+ A+ +++ NLN + + GLI T YLD +AE+
Sbjct: 67 KYELSVLPPQEIDARFESED--NLNRLEVNCFAGLIRSAKP-----TIAYLDACDVNAER 119
Query: 135 YQAKLSQRFP-SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG 193
+ + + ++ V + +ADS YP+VS ASI+AKV RD +R E +E M + G
Sbjct: 120 FGINIKKCLDFELEIVSAHEADSKYPIVSAASIIAKVHRDSLIR-----EISEKMGEDVG 174
Query: 194 SGYPGDHKHIIF---------GFPSLVRFSWGTCTSHFKDIVE 227
SGYP D I F P R SW T + D ++
Sbjct: 175 SGYPADPVTISFLKNYYMKHKCLPDCARKSWKTSNAVIADCLQ 217
>gi|333910258|ref|YP_004483991.1| ribonuclease HII [Methanotorris igneus Kol 5]
gi|333750847|gb|AEF95926.1| ribonuclease HII [Methanotorris igneus Kol 5]
Length = 232
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 79/220 (35%), Positives = 106/220 (48%), Gaps = 31/220 (14%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
I+GIDEAGRGPVLGPMV + + L L DSK L + +R++LF+ +
Sbjct: 6 IIIGIDEAGRGPVLGPMVVAGVAVEEDKIKELEDLGVKDSKQLTKNQRKKLFQLIGEMGK 65
Query: 75 VGWAVDIIDPRELSAKMLNK--NKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGD- 131
V II+P +L M K NKI LN S A G + + E+Y+D
Sbjct: 66 VKTI--IIEPEKLDELMKTKSLNKIELNAFSK-IANGFLKEIEG----NFEIYVDACSSN 118
Query: 132 ----AEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAEN 187
A + +AK+ + P K + KAD YP+VS ASI+AKVTRD + E+ +
Sbjct: 119 AKAFANQLRAKMIDKSP--KIIAEHKADEKYPIVSAASIIAKVTRDEII------ESYKK 170
Query: 188 MHRNFGSGYPGDHKHIIF---------GFPSLVRFSWGTC 218
+ GSGYP D K I F P + R SW T
Sbjct: 171 EYGEIGSGYPSDPKTINFLKKYVEEFGELPKIARKSWKTA 210
>gi|13540964|ref|NP_110652.1| ribonuclease HII [Thermoplasma volcanium GSS1]
Length = 219
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/209 (33%), Positives = 107/209 (51%), Gaps = 29/209 (13%)
Query: 18 GIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGW 77
GIDEAGRGPV+GPMV + C ++ L + DSK L ++RE LF+ K+ + +
Sbjct: 15 GIDEAGRGPVIGPMVISIV---CCKEEYLREIGVKDSKMLSRKRREYLFD--KITKNCAY 69
Query: 78 AVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQA 137
+ ++ P L+ M +++ LN+I + + L+++ I VY+D E+
Sbjct: 70 SYVVVSPETLNKDMASES---LNKIEENYILELLSKAEGI------VYIDCFDVIEERAE 120
Query: 138 KLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYP 197
K + + V KADS+YP VS ASIV+KV RDR + ++ AE + FGSGYP
Sbjct: 121 KYIREKSGKEVVCKHKADSIYPAVSAASIVSKVIRDREI-----DKIAEK-YGFFGSGYP 174
Query: 198 GDHKHIIF---------GFPSLVRFSWGT 217
D + I F S+ R W T
Sbjct: 175 SDPRTIDFLRKAMQQGLDLRSVARIHWET 203
>gi|34395818|sp|Q97CG6.2|RNH2_THEVO RecName: Full=Ribonuclease HII; Short=RNase HII
Length = 212
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 71/209 (33%), Positives = 107/209 (51%), Gaps = 29/209 (13%)
Query: 18 GIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGW 77
GIDEAGRGPV+GPMV + C ++ L + DSK L ++RE LF+ K+ + +
Sbjct: 8 GIDEAGRGPVIGPMVISIV---CCKEEYLREIGVKDSKMLSRKRREYLFD--KITKNCAY 62
Query: 78 AVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQA 137
+ ++ P L+ M +++ LN+I + + L+++ I VY+D E+
Sbjct: 63 SYVVVSPETLNKDMASES---LNKIEENYILELLSKAEGI------VYIDCFDVIEERAE 113
Query: 138 KLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYP 197
K + + V KADS+YP VS ASIV+KV RDR + ++ AE + FGSGYP
Sbjct: 114 KYIREKSGKEVVCKHKADSIYPAVSAASIVSKVIRDREI-----DKIAEK-YGFFGSGYP 167
Query: 198 GDHKHIIF---------GFPSLVRFSWGT 217
D + I F S+ R W T
Sbjct: 168 SDPRTIDFLRKAMQQGLDLRSVARIHWET 196
>gi|14324349|dbj|BAB59277.1| ribonuclease HII [Thermoplasma volcanium GSS1]
Length = 218
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 71/209 (33%), Positives = 107/209 (51%), Gaps = 29/209 (13%)
Query: 18 GIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGW 77
GIDEAGRGPV+GPMV + C ++ L + DSK L ++RE LF+ K+ + +
Sbjct: 14 GIDEAGRGPVIGPMVISIV---CCKEEYLREIGVKDSKMLSRKRREYLFD--KITKNCAY 68
Query: 78 AVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQA 137
+ ++ P L+ M +++ LN+I + + L+++ I VY+D E+
Sbjct: 69 SYVVVSPETLNKDMASES---LNKIEENYILELLSKAEGI------VYIDCFDVIEERAE 119
Query: 138 KLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYP 197
K + + V KADS+YP VS ASIV+KV RDR + ++ AE + FGSGYP
Sbjct: 120 KYIREKSGKEVVCKHKADSIYPAVSAASIVSKVIRDREI-----DKIAEK-YGFFGSGYP 173
Query: 198 GDHKHIIF---------GFPSLVRFSWGT 217
D + I F S+ R W T
Sbjct: 174 SDPRTIDFLRKAMQQGLDLRSVARIHWET 202
>gi|337283739|ref|YP_004623213.1| ribonuclease HII [Pyrococcus yayanosii CH1]
gi|334899673|gb|AEH23941.1| ribonuclease HII [Pyrococcus yayanosii CH1]
Length = 221
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 72/217 (33%), Positives = 110/217 (50%), Gaps = 32/217 (14%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL--KVND 73
+ GIDEAGRGPVLGP+V + L + DSK L +KRE+LFE + V+D
Sbjct: 3 VAGIDEAGRGPVLGPLVIVAVVVDEKKMTELEGIGVRDSKALTPKKREKLFERILSMVDD 62
Query: 74 SVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLN-IGILLTEVYLDTVG-D 131
+++ +++P E+ A+ N++ + + + LN + + VY+D+
Sbjct: 63 ---YSIVLVEPPEIDARAGTMNELEVEKFAQ---------ALNSLKVKPDVVYVDSADVR 110
Query: 132 AEKYQAKLSQRFP-SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHR 190
+E++ L ++ K V KAD+ YPVVS ASI+AKV RDR + E +
Sbjct: 111 SERFGLALREKLAFDAKVVSEHKADAKYPVVSAASILAKVIRDREIEKLKLE------YG 164
Query: 191 NFGSGYPGDHKHIIF---------GFPSLVRFSWGTC 218
+FGSGYP D + F FP +VR +W T
Sbjct: 165 DFGSGYPSDPRTRAFLEDYYRRHGDFPPMVRRTWKTV 201
>gi|256811096|ref|YP_003128465.1| ribonuclease HII [Methanocaldococcus fervens AG86]
gi|256794296|gb|ACV24965.1| ribonuclease HII [Methanocaldococcus fervens AG86]
Length = 230
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 82/227 (36%), Positives = 110/227 (48%), Gaps = 38/227 (16%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I+GIDEAGRGPVLGPMV ++ L L DSK L + KR L K+ ++
Sbjct: 3 IIGIDEAGRGPVLGPMVICGYAIKKDKEEDLKKLGVKDSKELTKNKRAYL---KKLLENF 59
Query: 76 GWAVDIIDPRELSAKMLNK--NKINLNEISHDS----AIGLITRVLNIGILLTEVYLDTV 129
G + +I L A+ +N + INLNEI ++ A LI + LNI E+YLD
Sbjct: 60 GCSEKLI----LEAEKINNLMDTINLNEIEINAFSEVAKNLIKK-LNIKDEEVEIYLDAC 114
Query: 130 GD---------AEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 180
EK + + +R IK + KADS YPVVS ASI+AK RD + +
Sbjct: 115 STNTKKFESDFKEKIRDVIEERNLKIKIIAEHKADSKYPVVSAASIIAKAERDEIIENY- 173
Query: 181 FEETAENMHRNFGSGYPGDHKHIIF---------GFPSLVRFSWGTC 218
+ ++ + GSGYP D K I F P + R W TC
Sbjct: 174 -----KKIYGDIGSGYPSDSKTIKFLEDYFKKHKKLPEITRTKWKTC 215
>gi|374635723|ref|ZP_09707316.1| ribonuclease HII [Methanotorris formicicus Mc-S-70]
gi|373561339|gb|EHP87576.1| ribonuclease HII [Methanotorris formicicus Mc-S-70]
Length = 234
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 79/226 (34%), Positives = 105/226 (46%), Gaps = 31/226 (13%)
Query: 9 KWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFED 68
K I+GIDEAGRGPVLGPMV + + L L DSK L + +R++LF
Sbjct: 4 KMKDKKIIVGIDEAGRGPVLGPMVVAGVAIEEDKIKELEDLGVKDSKQLTKNRRKKLFR- 62
Query: 69 LKVNDSVGWAVDIIDPRELSAKMLNKN--KINLNEISHDSAIGLITRVLNIGILLTEVYL 126
+ + II+P +L M KN KI LN S A G + + E+Y+
Sbjct: 63 -LIGEMGKIKTIIIEPEKLDELMKTKNLNKIELNAFSK-IANGFLKEIEG----NFEIYV 116
Query: 127 DTVGD-----AEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIF 181
D A + +AK+ + P K + KAD YP+VS ASI+AKVTRD + +
Sbjct: 117 DACSSNAKAFANQLKAKMIDKTP--KIIAEHKADEKYPIVSSASIIAKVTRDEIIEHYKK 174
Query: 182 EETAENMHRNFGSGYPGDHKHIIF---------GFPSLVRFSWGTC 218
E + GSGYP D K I F P + R SW T
Sbjct: 175 E------YGEIGSGYPSDPKTINFLKHYVGEFGELPKIARKSWKTS 214
>gi|170289973|ref|YP_001736789.1| ribonuclease HII [Candidatus Korarchaeum cryptofilum OPF8]
gi|170174053|gb|ACB07106.1| ribonuclease HII [Candidatus Korarchaeum cryptofilum OPF8]
Length = 217
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 75/226 (33%), Positives = 111/226 (49%), Gaps = 36/226 (15%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVG 76
MGIDEAGRGPV+GPMV + + L + DSK L E+REELF + + +
Sbjct: 1 MGIDEAGRGPVIGPMVVAAVILKRREAKRLKEMGVTDSKLLSAERREELF-PMIIESAES 59
Query: 77 WAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGI--------LLTEVYLDT 128
+ + +I+P+ + + ++KN +NL E S + R + + ++V +
Sbjct: 60 YLIKVIEPKRID-EAVSKNMLNLLEAEVMSELIRELRPARVIVDSPMRNCRKFSDVLREF 118
Query: 129 VGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENM 188
+GD+ S+K + KADS Y V+ ASI+AKV RDR +R E +E
Sbjct: 119 LGDS------------SVKIIAENKADSKYIQVASASIIAKVERDRRIR-----ELSELT 161
Query: 189 HRNFGSGYPGDHK------HIIFG--FP-SLVRFSWGTCTSHFKDI 225
GSGYPGD K I+ G FP VR+ W T ++I
Sbjct: 162 GVEIGSGYPGDPKTREAIRMILKGAEFPRDQVRWKWATINRLLEEI 207
>gi|16082425|ref|NP_394911.1| ribonuclease HII [Thermoplasma acidophilum DSM 1728]
gi|11387092|sp|P57673.1|RNH2_THEAC RecName: Full=Ribonuclease HII; Short=RNase HII
gi|10640800|emb|CAC12578.1| probable ribonuclease HII [Thermoplasma acidophilum]
Length = 212
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 72/209 (34%), Positives = 106/209 (50%), Gaps = 29/209 (13%)
Query: 18 GIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGW 77
GIDEAGRGPV+GPMV + C S+ L + DSK L ++R ELFE + SV +
Sbjct: 9 GIDEAGRGPVIGPMVISLVCCDLSF---LKEIRVKDSKALTRKRRSELFEKIMGRCSVRY 65
Query: 78 AVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQA 137
I+ P++L+ M + +LN+I D + L+ ++ VY+D E+
Sbjct: 66 R--ILHPKDLNRMMAAE---SLNKIEEDEIVDLLRYADDL------VYIDCYDVIEERAQ 114
Query: 138 KLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYP 197
++ Q + V KAD+++P VS ASIV+KV RD + + + +FGSGYP
Sbjct: 115 EIIQMRSGRQVVCKHKADAIFPAVSAASIVSKVIRDAEI------DRLHDRFGDFGSGYP 168
Query: 198 GDHKHIIF--------GFPS-LVRFSWGT 217
D + I F PS +VR W T
Sbjct: 169 SDPRTIDFLKKYLKENQDPSEIVRIHWST 197
>gi|15668305|ref|NP_247101.1| ribonuclease HII [Methanocaldococcus jannaschii DSM 2661]
gi|2495822|sp|Q57599.1|RNH2_METJA RecName: Full=Ribonuclease HII; Short=RNase HII
gi|1590900|gb|AAB98116.1| ribonuclease HII (rnhB) [Methanocaldococcus jannaschii DSM 2661]
Length = 230
Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 79/227 (34%), Positives = 114/227 (50%), Gaps = 38/227 (16%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I+GIDEAGRGPVLGPMV ++ L L DSK L + KR L K+ +++
Sbjct: 3 IIGIDEAGRGPVLGPMVVCAFAIEKEREEELKKLGVKDSKELTKNKRAYL---KKLLENL 59
Query: 76 GWAVDIIDPRELSAKMLNK--NKINLNEISHDS----AIGLITRVLNIGILLTEVYLDTV 129
G+ ++ R L A+ +N+ N INLN+I ++ A LI + LNI E+Y+D
Sbjct: 60 GY----VEKRILEAEEINQLMNSINLNDIEINAFSKVAKNLIEK-LNIRDDEIEIYIDAC 114
Query: 130 GD---------AEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 180
+K + + +R +IK + KAD+ YPVVS ASI+AK RD + +
Sbjct: 115 STNTKKFEDSFKDKIEDIIKERNLNIKIIAEHKADAKYPVVSAASIIAKAERDEIIDYY- 173
Query: 181 FEETAENMHRNFGSGYPGDHKHIIF---------GFPSLVRFSWGTC 218
+ ++ + GSGYP D K I F P + R W TC
Sbjct: 174 -----KKIYGDIGSGYPSDPKTIKFLEDYFKKHKKLPDIARTHWKTC 215
>gi|296108883|ref|YP_003615832.1| ribonuclease HII [methanocaldococcus infernus ME]
gi|295433697|gb|ADG12868.1| ribonuclease HII [Methanocaldococcus infernus ME]
Length = 223
Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 80/218 (36%), Positives = 114/218 (52%), Gaps = 36/218 (16%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVG 76
+G+DEAGRGPV+GP+V C+Y + DSK L +EKRE+L ++L+
Sbjct: 3 IGVDEAGRGPVIGPLVV------CAYASE-EEIEAEDSKKLSKEKREKLRKELEKKG--- 52
Query: 77 WAVDIIDPRELSAKMLNK--NKINLNEISHDSAIGLITRVLNIGILL-TEVYLDTVG-DA 132
I + ++SA+ LN+ NLNEI + I ++ L E+Y+D+ +
Sbjct: 53 ----IFEIVKVSAEELNRLMKSKNLNEIEVELFAKAIKNLIEKHNLKDVEIYVDSCSPNR 108
Query: 133 EKYQAKLSQRFP--SIK-FVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH 189
EK++ KL + SIK +V KAD Y VVS ASI+AK RDR + E + ++
Sbjct: 109 EKFKRKLLSKLRGLSIKDLIVEHKADEKYKVVSAASIIAKTERDREI------EELKKIY 162
Query: 190 RNFGSGYPGDHKHIIF---------GFPSLVRFSWGTC 218
+FGSGYP D K F FPS+VR W TC
Sbjct: 163 GDFGSGYPSDPKTKRFLLYYYNEYREFPSIVREHWETC 200
>gi|254167925|ref|ZP_04874774.1| ribonuclease HII [Aciduliprofundum boonei T469]
gi|197623216|gb|EDY35782.1| ribonuclease HII [Aciduliprofundum boonei T469]
Length = 212
Score = 100 bits (249), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 74/217 (34%), Positives = 111/217 (51%), Gaps = 29/217 (13%)
Query: 18 GIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGW 77
G+DEAGRGPV+GP+V + C + +A+L DSK L + RE L E++K S
Sbjct: 4 GVDEAGRGPVIGPLVVAGV---CGEESKIASLRVKDSKKLSPKSRERLAEEIKKVAS-KI 59
Query: 78 AVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG-DAEKYQ 136
V I+P E+ A + ++ LNEI + L RV++ + +VY+D + +++
Sbjct: 60 VVIKIEPEEIDA---LRERMTLNEIE----VELFARVIS-QLNGDKVYVDAADVNEDRFA 111
Query: 137 AKLSQRF-PSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 195
++ ++ ++ + KADS YP+VS ASI+AKV RDR I EE E + FGSG
Sbjct: 112 EEIKKKLGKDVEIISEHKADSKYPMVSAASIIAKVERDR-----IIEELKEELG-EFGSG 165
Query: 196 YPGDHKHIIF---------GFPSLVRFSWGTCTSHFK 223
YP D + F P R SW + K
Sbjct: 166 YPSDDRTKRFLEKYVKEHNELPPHTRHSWKSAKRAMK 202
>gi|254167831|ref|ZP_04874680.1| ribonuclease HII [Aciduliprofundum boonei T469]
gi|289596631|ref|YP_003483327.1| ribonuclease HII [Aciduliprofundum boonei T469]
gi|197623122|gb|EDY35688.1| ribonuclease HII [Aciduliprofundum boonei T469]
gi|289534418|gb|ADD08765.1| ribonuclease HII [Aciduliprofundum boonei T469]
Length = 212
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 73/217 (33%), Positives = 112/217 (51%), Gaps = 29/217 (13%)
Query: 18 GIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGW 77
G+DEAGRGPV+GP+V + C + +A+L DSK L ++RE L E++K S
Sbjct: 4 GVDEAGRGPVIGPLVVAGV---CGEESKIASLRVKDSKKLSPKRRERLAEEIKKVAS-KI 59
Query: 78 AVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG-DAEKYQ 136
V I+P E+ A + K+ LNEI + L RV++ + +VY+D + +++
Sbjct: 60 VVIKIEPEEIDA---LREKMTLNEIE----VELFARVIS-QLNGDKVYVDAADVNEDRFA 111
Query: 137 AKLSQRF-PSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 195
++ ++ ++ + KADS YP+VS ASI+AKV RDR + + +E E FGSG
Sbjct: 112 EEIKKKLGKDVEIISEHKADSKYPMVSAASIIAKVERDRII-NELKKELGE-----FGSG 165
Query: 196 YPGDHKHIIF---------GFPSLVRFSWGTCTSHFK 223
YP D + F P R SW + K
Sbjct: 166 YPADERTKRFLEKYVKEHNELPPHTRHSWKSAKRAMK 202
>gi|134104117|pdb|2DFF|A Chain A, Crystal Structure Of Tk-Rnase Hii(1-204)-C
Length = 213
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 76/223 (34%), Positives = 110/223 (49%), Gaps = 28/223 (12%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDEAGRGPV+GPMV + + L L DSK L ++RE+LF N+ +
Sbjct: 3 IAGIDEAGRGPVIGPMVIAAVVVDENSLPKLEELKVRDSKKLTPKRREKLF-----NEIL 57
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLN-IGILLTEVYLDTVG-DAE 133
G D + EL ++ + LNE ++ + LN + + +Y D D E
Sbjct: 58 GVLDDYVI-LELPPDVIGSREGTLNEFEVEN----FAKALNSLKVKPDVIYADAADVDEE 112
Query: 134 KYQAKLSQRFPSIKFVVSK-KADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF 192
++ +L +R VV+K KAD ++PVVS ASI+AKVTRDR + E + +
Sbjct: 113 RFARELGERLNFEAEVVAKHKADDIFPVVSAASILAKVTRDRAV------EKLKEEYGEI 166
Query: 193 GSGYPGDHKHIIF---------GFPSLVRFSWGTCTSHFKDIV 226
GSGYP D + F FP +VR W T +D++
Sbjct: 167 GSGYPSDPRTRAFLENYYREHGEFPPIVRKGWKTLKKITQDMI 209
>gi|10835820|pdb|1EKE|A Chain A, Crystal Structure Of Class Ii Ribonuclease H (Rnase Hii)
With Mes Ligand
gi|10835821|pdb|1EKE|B Chain B, Crystal Structure Of Class Ii Ribonuclease H (Rnase Hii)
With Mes Ligand
Length = 230
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 78/227 (34%), Positives = 113/227 (49%), Gaps = 38/227 (16%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I+GIDEAGRGPVLGP V ++ L L DSK L + KR L K+ +++
Sbjct: 3 IIGIDEAGRGPVLGPXVVCAFAIEKEREEELKKLGVKDSKELTKNKRAYL---KKLLENL 59
Query: 76 GWAVDIIDPRELSAKMLNK--NKINLNEISHDS----AIGLITRVLNIGILLTEVYLDTV 129
G+ ++ R L A+ +N+ N INLN+I ++ A LI + LNI E+Y+D
Sbjct: 60 GY----VEKRILEAEEINQLXNSINLNDIEINAFSKVAKNLIEK-LNIRDDEIEIYIDAC 114
Query: 130 GD---------AEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 180
+K + + +R +IK + KAD+ YPVVS ASI+AK RD + +
Sbjct: 115 STNTKKFEDSFKDKIEDIIKERNLNIKIIAEHKADAKYPVVSAASIIAKAERDEIIDYY- 173
Query: 181 FEETAENMHRNFGSGYPGDHKHIIF---------GFPSLVRFSWGTC 218
+ ++ + GSGYP D K I F P + R W TC
Sbjct: 174 -----KKIYGDIGSGYPSDPKTIKFLEDYFKKHKKLPDIARTHWKTC 215
>gi|57640740|ref|YP_183218.1| ribonuclease HII [Thermococcus kodakarensis KOD1]
gi|7227922|sp|O74035.1|RNH2_PYRKO RecName: Full=Ribonuclease HII; Short=RNase HII
gi|3551209|dbj|BAA32803.1| ribonuclease HII [Thermococcus kodakaraensis]
gi|57159064|dbj|BAD84994.1| ribonuclease HII [Thermococcus kodakarensis KOD1]
Length = 228
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 75/215 (34%), Positives = 106/215 (49%), Gaps = 28/215 (13%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDEAGRGPV+GPMV + + L L DSK L ++RE+LF N+ +
Sbjct: 3 IAGIDEAGRGPVIGPMVIAAVVVDENSLPKLEELKVRDSKKLTPKRREKLF-----NEIL 57
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLN-IGILLTEVYLDTVG-DAE 133
G D + EL ++ + LNE ++ + LN + + +Y D D E
Sbjct: 58 GVLDDYV-ILELPPDVIGSREGTLNEFEVEN----FAKALNSLKVKPDVIYADAADVDEE 112
Query: 134 KYQAKLSQRFPSIKFVVSK-KADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF 192
++ +L +R VV+K KAD ++PVVS ASI+AKVTRDR + E + +
Sbjct: 113 RFARELGERLNFEAEVVAKHKADDIFPVVSAASILAKVTRDRAV------EKLKEEYGEI 166
Query: 193 GSGYPGDHKHIIF---------GFPSLVRFSWGTC 218
GSGYP D + F FP +VR W T
Sbjct: 167 GSGYPSDPRTRAFLENYYREHGEFPPIVRKGWKTL 201
>gi|14278500|pdb|1IO2|A Chain A, Crystal Structure Of Type 2 Ribonuclease H From
Hyperthermophilic Archaeon, Thermococcus Kodakaraensis
Kod1
Length = 213
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 75/215 (34%), Positives = 106/215 (49%), Gaps = 28/215 (13%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDEAGRGPV+GPMV + + L L DSK L ++RE+LF N+ +
Sbjct: 3 IAGIDEAGRGPVIGPMVIAAVVVDENSLPKLEELKVRDSKKLTPKRREKLF-----NEIL 57
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLN-IGILLTEVYLDTVG-DAE 133
G D + EL ++ + LNE ++ + LN + + +Y D D E
Sbjct: 58 GVLDDYVI-LELPPDVIGSREGTLNEFEVEN----FAKALNSLKVKPDVIYADAADVDEE 112
Query: 134 KYQAKLSQRFPSIKFVVSK-KADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF 192
++ +L +R VV+K KAD ++PVVS ASI+AKVTRDR + E + +
Sbjct: 113 RFARELGERLNFEAEVVAKHKADDIFPVVSAASILAKVTRDRAV------EKLKEEYGEI 166
Query: 193 GSGYPGDHKHIIF---------GFPSLVRFSWGTC 218
GSGYP D + F FP +VR W T
Sbjct: 167 GSGYPSDPRTRAFLENYYREHGEFPPIVRKGWKTL 201
>gi|134104118|pdb|2DFH|A Chain A, Crystal Structure Of Tk-Rnase Hii(1-212)-C
Length = 221
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 75/215 (34%), Positives = 106/215 (49%), Gaps = 28/215 (13%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDEAGRGPV+GPMV + + L L DSK L ++RE+LF N+ +
Sbjct: 3 IAGIDEAGRGPVIGPMVIAAVVVDENSLPKLEELKVRDSKKLTPKRREKLF-----NEIL 57
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLN-IGILLTEVYLDTVG-DAE 133
G D + EL ++ + LNE ++ + LN + + +Y D D E
Sbjct: 58 GVLDDYV-ILELPPDVIGSREGTLNEFEVEN----FAKALNSLKVKPDVIYADAADVDEE 112
Query: 134 KYQAKLSQRFPSIKFVVSK-KADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF 192
++ +L +R VV+K KAD ++PVVS ASI+AKVTRDR + E + +
Sbjct: 113 RFARELGERLNFEAEVVAKHKADDIFPVVSAASILAKVTRDRAV------EKLKEEYGEI 166
Query: 193 GSGYPGDHKHIIF---------GFPSLVRFSWGTC 218
GSGYP D + F FP +VR W T
Sbjct: 167 GSGYPSDPRTRAFLENYYREHGEFPPIVRKGWKTL 201
>gi|284161145|ref|YP_003399768.1| ribonuclease HII [Archaeoglobus profundus DSM 5631]
gi|284011142|gb|ADB57095.1| ribonuclease HII [Archaeoglobus profundus DSM 5631]
Length = 211
Score = 97.4 bits (241), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 76/230 (33%), Positives = 120/230 (52%), Gaps = 37/230 (16%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDEAG+GPV+GP+V + C + L ++ DSK L KREEL+ +K
Sbjct: 2 IAGIDEAGKGPVIGPLVICGVLCDEETVEYLKSVGVKDSKKLDRRKREELYNIIK----- 56
Query: 76 GWAVDIIDPRELSAKMLNK--NKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG-DA 132
++ + ++S + LN+ +++NEI + + +I ++ VY+D +
Sbjct: 57 --SLCKVKVLKISVEDLNRLMEYMSINEILKRAYVEIIR-----SLMPKVVYIDCPDINV 109
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFE-ETAENMHRN 191
E+++ ++ +R ++ S KAD +YP+VS ASIVAKV RD FE + + ++ +
Sbjct: 110 ERFKHEIEER-TGVEVFASHKADEIYPIVSIASIVAKVERD-------FEIDKLKKIYGD 161
Query: 192 FGSGYPGDHKHIIF---------GFPSLVRFSWGT---CTSH-FKDIVEV 228
FGSGYP D + I F FP +VR W T T+H D EV
Sbjct: 162 FGSGYPSDLRTIEFLRSYLREHKSFPPIVRKRWKTLKRLTTHTLSDFFEV 211
>gi|134104116|pdb|2DFE|A Chain A, Crystal Structure Of Tk-Rnase Hii(1-200)-C
Length = 209
Score = 97.4 bits (241), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 75/215 (34%), Positives = 106/215 (49%), Gaps = 28/215 (13%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDEAGRGPV+GPMV + + L L DSK L ++RE+LF N+ +
Sbjct: 3 IAGIDEAGRGPVIGPMVIAAVVVDENSLPKLEELKVRDSKKLTPKRREKLF-----NEIL 57
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLN-IGILLTEVYLDTVG-DAE 133
G D + EL ++ + LNE ++ + LN + + +Y D D E
Sbjct: 58 GVLDDYVI-LELPPDVIGSREGTLNEFEVEN----FAKALNSLKVKPDVIYADAADVDEE 112
Query: 134 KYQAKLSQRFPSIKFVVSK-KADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF 192
++ +L +R VV+K KAD ++PVVS ASI+AKVTRDR + E + +
Sbjct: 113 RFARELGERLNFEAEVVAKHKADDIFPVVSAASILAKVTRDRAV------EKLKEEYGEI 166
Query: 193 GSGYPGDHKHIIF---------GFPSLVRFSWGTC 218
GSGYP D + F FP +VR W T
Sbjct: 167 GSGYPSDPRTRAFLENYYREHGEFPPIVRKGWKTT 201
>gi|20090807|ref|NP_616882.1| ribonuclease HII [Methanosarcina acetivorans C2A]
gi|34395791|sp|Q8TPF4.1|RNH2_METAC RecName: Full=Ribonuclease HII; Short=RNase HII
gi|19915872|gb|AAM05362.1| ribonuclease Hii [Methanosarcina acetivorans C2A]
Length = 223
Score = 97.4 bits (241), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 75/222 (33%), Positives = 108/222 (48%), Gaps = 33/222 (14%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDEAG+GPV+GPM G + S L L ADSK L +KRE+L +K +
Sbjct: 3 IAGIDEAGKGPVIGPMCIGGVKIEESRAHILKVLGVADSKKLTPKKREQLASQIK-KHAD 61
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG-DAEK 134
G+ + I P ++ + +++NEI + +VL + VY D AE+
Sbjct: 62 GFFILEITPAQIDE---LRKIMSMNEI----MVICFAKVLE-QLKPDIVYADAADVKAER 113
Query: 135 YQAKLSQRFP--------SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAE 186
+ L +++ I+ + +AD++YPVVS ASI+AKV RD + EE +
Sbjct: 114 FAENLRRQYAKTNPAHAKKIEIISMHQADAIYPVVSAASIIAKVRRDE-----LIEEIKK 168
Query: 187 NMHRNFGSGYPGDHKHIIF----------GFPSLVRFSWGTC 218
+FGSGYP D K F FP +VR SW T
Sbjct: 169 EWSVDFGSGYPSDPKTKAFLLKWGKEHDGKFPEIVRQSWQTV 210
>gi|257076035|ref|ZP_05570396.1| ribonuclease HII [Ferroplasma acidarmanus fer1]
Length = 205
Score = 97.4 bits (241), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 73/215 (33%), Positives = 104/215 (48%), Gaps = 34/215 (15%)
Query: 18 GIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGW 77
GIDEAGRGP++GPMV L C +++L + ADSK L +RE LF L+ S +
Sbjct: 5 GIDEAGRGPLIGPMVMAIL---CGDRESLEIIGVADSKKLSPGRRESLFARLQ---SYKY 58
Query: 78 AVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQA 137
II P E+ + + K+N+ E ++ S + + + VY+D+ E
Sbjct: 59 NFVIISPSEID-RYVEHQKLNVLEETYASKLA------SWAPASSTVYVDSFDVNELRLQ 111
Query: 138 KLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHR---NFGS 194
L + V KAD +YP VS ASI+AKV RDR + + +H+ +FGS
Sbjct: 112 SLLMENTKRQIVCRHKADEIYPCVSAASIIAKVIRDREI---------DKLHKDYGDFGS 162
Query: 195 GYPGDHKHIIF---------GFPSLVRFSWGTCTS 220
GYP D + I F S+VR W T S
Sbjct: 163 GYPSDPRTINFVKNALKNGINIDSIVRHQWKTYKS 197
>gi|429964623|gb|ELA46621.1| ribonuclease HII [Vavraia culicis 'floridensis']
Length = 343
Score = 97.1 bits (240), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 75/251 (29%), Positives = 116/251 (46%), Gaps = 66/251 (26%)
Query: 17 MGIDEAGRGPVLGPMVYGCLY-----------CPCSYQQTLATLNFADSKTLKEEKREEL 65
+GIDEAGRGPVLG +VY L + + + + DSK L ++RE +
Sbjct: 82 IGIDEAGRGPVLGYLVYAALIIEEENDITNPTVSSALKDVHSDIKMCDSKLLLPKQRETI 141
Query: 66 FEDLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVL---------- 115
++ ++ S W + P +S +M ++ NLN+IS SA+ I R++
Sbjct: 142 YDQIRNTHSYVWYA--LHPEYISTEM---DRRNLNDISI-SAVVYILRIIFEALSTENGN 195
Query: 116 -----------NIGILLTE---------------VYLDTVGDAEKYQAKLSQRFPSIKFV 149
N GI ++ V++D +G+ +KY L + FPS+ F
Sbjct: 196 KRRFWDCQERTNTGIGRSDEIGKNVSLRRDGVENVFIDALGNTDKYLQILQRHFPSVPFT 255
Query: 150 VSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDHKHIIFGFPS 209
+ KADS+Y V GASI+AKV RD L+ + E GSGYP D + + + +
Sbjct: 256 IKPKADSIYRCVGGASIIAKVVRDDLLKQFSAE---------CGSGYPSDWRTVKWLDTN 306
Query: 210 ----LVRFSWG 216
+VRF W
Sbjct: 307 RECEMVRFKWA 317
>gi|289192478|ref|YP_003458419.1| ribonuclease HII [Methanocaldococcus sp. FS406-22]
gi|288938928|gb|ADC69683.1| ribonuclease HII [Methanocaldococcus sp. FS406-22]
Length = 230
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 79/230 (34%), Positives = 113/230 (49%), Gaps = 44/230 (19%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKR---EELFEDLKVN 72
++GIDEAGRGPVLGPMV ++ L L DSK L + KR ++L EDL
Sbjct: 3 VIGIDEAGRGPVLGPMVVCAFAIEKDKEEELKKLGVRDSKELTKNKRAYLKKLLEDL--- 59
Query: 73 DSVGWAVDIIDPRELSAKMLNK--NKINLNEISHDS----AIGLITRVLNIGILLTEVYL 126
G+ +I L A+ +N+ + INLNEI ++ A LI + L I E+YL
Sbjct: 60 ---GYVEKLI----LEAEKINQLMSTINLNEIEINAFSKVAENLIEK-LGIKDEKIEIYL 111
Query: 127 DTVG-DAEKYQAKLSQRFPSI--------KFVVSKKADSLYPVVSGASIVAKVTRDRTLR 177
D +A+K++ ++ +I K + KAD+ Y VVS ASI+AK RD +
Sbjct: 112 DACSTNAKKFENDFKEKLDNIIKERNLNVKIIAEHKADAKYSVVSAASIIAKAERDEIID 171
Query: 178 GWIFEETAENMHRNFGSGYPGDHKHIIF---------GFPSLVRFSWGTC 218
+ + ++ + GSGYP D K I F P + R W TC
Sbjct: 172 NY------KKIYGDIGSGYPSDPKTIKFLENYFKKHKKLPDIARTHWKTC 215
>gi|375082469|ref|ZP_09729526.1| ribonuclease HII [Thermococcus litoralis DSM 5473]
gi|374742808|gb|EHR79189.1| ribonuclease HII [Thermococcus litoralis DSM 5473]
Length = 224
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 74/216 (34%), Positives = 106/216 (49%), Gaps = 34/216 (15%)
Query: 18 GIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGW 77
GIDEAGRGPV+GP+V + S Q L L DSK L ++REELFE++
Sbjct: 5 GIDEAGRGPVIGPLVIAAVVVDESRMQELEALGVKDSKKLTPKRREELFEEI-------- 56
Query: 78 AVDIIDPR---ELSAKMLNKNKINLNEISHDSAIGLITRVLN-IGILLTEVYLDTVGDAE 133
V I+D +LS + ++ +NE+ ++ + LN + + +Y+D E
Sbjct: 57 -VQIVDDHVIIQLSPEEIDGRDGTMNELEIEN----FAKALNSLKVKPDVLYIDAADVKE 111
Query: 134 K-YQAKLSQRFP-SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRN 191
K + + +R S K + KADS Y V+ ASI+AKVTRDR + E + ++
Sbjct: 112 KRFGDIIGERLSFSPKIIAEHKADSKYIPVAAASILAKVTRDRAI------EKLKELYGE 165
Query: 192 FGSGYPGDHKHIIF---------GFPSLVRFSWGTC 218
GSGYP D F FP +VR SW T
Sbjct: 166 IGSGYPSDPITRRFLEEYYKAHGEFPPIVRKSWKTL 201
>gi|332157881|ref|YP_004423160.1| ribonuclease HII [Pyrococcus sp. NA2]
gi|331033344|gb|AEC51156.1| ribonuclease HII [Pyrococcus sp. NA2]
Length = 219
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 70/214 (32%), Positives = 112/214 (52%), Gaps = 26/214 (12%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I G+DEAGRGPV+GP+V + L ++ DSK L E+RE +F+++ VN
Sbjct: 3 IGGVDEAGRGPVIGPLVIVAVVISEDMLSDLRSIGVRDSKQLTPEQRERIFDEI-VNVLD 61
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
++V ++ P+E+ + + +NL E+ L LN+ + +Y+D+ EK
Sbjct: 62 DYSVVVVSPQEIDNR---SSSLNLLEVEK---FALALNSLNVK--PSRIYVDSADVDEKR 113
Query: 136 QAKL--SQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG 193
A L ++ + + + KAD+ Y VV+ ASI+AKV RDR + E + + +FG
Sbjct: 114 FASLIRAKLNYNAEVIAEHKADAKYEVVAAASILAKVIRDREI------EKLKERYGDFG 167
Query: 194 SGYPGDHK--------HIIFG-FPSLVRFSWGTC 218
SGYP D + + +G FP +VR SW T
Sbjct: 168 SGYPSDPRTRRWLEEYYKEYGEFPPIVRRSWDTV 201
>gi|21228916|ref|NP_634838.1| ribonuclease HII [Methanosarcina mazei Go1]
gi|34395785|sp|Q8PTA3.1|RNH2_METMA RecName: Full=Ribonuclease HII; Short=RNase HII
gi|20907449|gb|AAM32510.1| Ribonuclease [Methanosarcina mazei Go1]
Length = 220
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 76/222 (34%), Positives = 107/222 (48%), Gaps = 33/222 (14%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDEAG+GPV+GPM G + S L L ADSK L +KRE+L +K +
Sbjct: 3 IAGIDEAGKGPVIGPMCIGGVKIDESKAHILKVLGVADSKKLTPKKREQLASQIK-KHAD 61
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG-DAEK 134
G+ + + P ++ + +++NEI + +VL + VY D AE+
Sbjct: 62 GYFIFEVSPSQIDE---LRKIMSMNEI----MVVCFAKVLE-QLKPDIVYADAADVKAER 113
Query: 135 YQAKLSQRFP--------SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAE 186
+ L +++ IK V +AD++YPVVS ASI+AKV RD + EE
Sbjct: 114 FAENLLRQYAKTSPDHAKKIKVVSMHQADAIYPVVSAASIIAKVRRDE-----LIEELKR 168
Query: 187 NMHRNFGSGYPGDHKHIIF----------GFPSLVRFSWGTC 218
+FGSGYP D K F FP +VR SW T
Sbjct: 169 EWCIDFGSGYPSDPKTRGFLLKWGKEHGGDFPDIVRQSWQTV 210
>gi|307595739|ref|YP_003902056.1| ribonuclease HII [Vulcanisaeta distributa DSM 14429]
gi|307550940|gb|ADN51005.1| ribonuclease HII [Vulcanisaeta distributa DSM 14429]
Length = 218
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 76/216 (35%), Positives = 107/216 (49%), Gaps = 32/216 (14%)
Query: 18 GIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGW 77
GIDEAGRGPV+GPMV + L + DSK L R LF LK ++ +
Sbjct: 7 GIDEAGRGPVIGPMVMAI--AVTNDMNRLKAMGIRDSKELSPAGRARLFSILK--STLNY 62
Query: 78 A-VDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGD-AEKY 135
+I++PR + + N +N+ E+ + AI LI R LN + VY+D+ E+Y
Sbjct: 63 IDYEIVEPRVID-NYVYMNALNILEV--EIAIKLINRALN-SVSPQVVYIDSPDPRPERY 118
Query: 136 QAKLSQRFP-SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHR---N 191
+ + + +++ V AD L PVVS ASIVAKV RD + E +HR +
Sbjct: 119 RDMVKRGVVGNVEVVAMNNADKLIPVVSAASIVAKVIRDSII---------EELHREYGD 169
Query: 192 FGSGYPGDHKHIIF---------GFPSLVRFSWGTC 218
FGSGYP D + + F P +VR SW T
Sbjct: 170 FGSGYPSDPRTMAFLRDWVKRHGDLPPIVRRSWSTV 205
>gi|307353890|ref|YP_003894941.1| ribonuclease HII [Methanoplanus petrolearius DSM 11571]
gi|307157123|gb|ADN36503.1| ribonuclease HII [Methanoplanus petrolearius DSM 11571]
Length = 212
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 79/218 (36%), Positives = 105/218 (48%), Gaps = 33/218 (15%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDEAG+G VLGPMV G + FADSKTL +RE+ +E++
Sbjct: 2 ICGIDEAGKGSVLGPMVIGGV--AGKDLSEFVKKGFADSKTLSPRRREQFYEEIVAEFKT 59
Query: 76 GWAVDIIDPRELSAKMLN--KNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAE 133
V LSA M++ ++ + +NEI S IT ++ Y+D E
Sbjct: 60 TTVV-------LSAAMIDELRSSMTMNEIVARSHARAIT-----DLMPDTAYVDACDVNE 107
Query: 134 -KYQAKLSQRFPSIKFVVSK-KADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRN 191
+Y +S + +VSK KAD LY VVS ASIVAKVTRDR + E ++ N
Sbjct: 108 VRYAETISGFLKNDIAIVSKHKADDLYAVVSAASIVAKVTRDRMI------EDLKSQWGN 161
Query: 192 FGSGYPGDHKHIIF---------GFPSLVRFSWGTCTS 220
GSGYP D I F PS+ R SW T ++
Sbjct: 162 IGSGYPSDPDTIAFLKRYIEERGEPPSIARMSWKTISN 199
>gi|150399435|ref|YP_001323202.1| ribonuclease HII [Methanococcus vannielii SB]
gi|189043627|sp|A6UQ18.1|RNH2_METVS RecName: Full=Ribonuclease HII; Short=RNase HII
gi|150012138|gb|ABR54590.1| ribonuclease HII [Methanococcus vannielii SB]
Length = 244
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 70/224 (31%), Positives = 104/224 (46%), Gaps = 22/224 (9%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
I+G+DEAGRGPVLGPMV + + +L+ DSK L +++REE + +N+
Sbjct: 24 IILGLDEAGRGPVLGPMVISVVKVTEKDLDKINSLDLKDSKQLTKKRREEYYNI--INEC 81
Query: 75 VGWAVDIIDPRELSAKML--NKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
++ P ++ M N NKI L+ S S + N+ I +
Sbjct: 82 FEVQKIVLAPEKIDEYMKTSNLNKIELSAFSKLSN-HFLKEYENVKIFIDACSSSEQSFL 140
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF 192
+++AKL + ++ + KAD Y +VS ASI+AKVTRD + + E +
Sbjct: 141 NQFKAKLINK--KVEIIAEHKADEKYKIVSAASIIAKVTRDNIIESYKEE------FGDI 192
Query: 193 GSGYPGDHKHIIF---------GFPSLVRFSWGTCTSHFKDIVE 227
GSGYPGD K F P + R SW T K+ E
Sbjct: 193 GSGYPGDPKTKEFLKRFVKEHKKLPKIARGSWATSKKLLKEFEE 236
>gi|14520734|ref|NP_126209.1| ribonuclease HII [Pyrococcus abyssi GE5]
gi|11387114|sp|Q9V1A9.1|RNH2_PYRAB RecName: Full=Ribonuclease HII; Short=RNase HII
gi|5457950|emb|CAB49440.1| rnhB ribonuclease HII [Pyrococcus abyssi GE5]
gi|380741273|tpe|CCE69907.1| TPA: ribonuclease HII [Pyrococcus abyssi GE5]
Length = 224
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 69/217 (31%), Positives = 111/217 (51%), Gaps = 32/217 (14%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL-KVNDS 74
+ G DEAGRGPV+GP+V ++L L DSK L +RE+LF+++ KV D
Sbjct: 3 VAGADEAGRGPVIGPLVIVAAVVEEDKIRSLTKLGVKDSKQLTPAQREKLFDEIVKVLDD 62
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG-DAE 133
++V I+ P+++ + K ++NE+ ++ + + ++ + +Y+D+ AE
Sbjct: 63 --YSVVIVSPQDIDGR-----KGSMNELEVENFVKALN---SLKVKPEVIYIDSADVKAE 112
Query: 134 KYQAKLSQRFP-SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF 192
++ + R K V KAD+ Y +VS ASI+AKV RDR + E + + +F
Sbjct: 113 RFAENIRSRLAYEAKVVAEHKADAKYEIVSAASILAKVIRDREI------EKLKAEYGDF 166
Query: 193 GSGYPGD-----------HKHIIFGFPSLVRFSWGTC 218
GSGYP D KH FP +VR +W T
Sbjct: 167 GSGYPSDPRTKKWLEEWYSKH--GNFPPIVRRTWDTA 201
>gi|432328903|ref|YP_007247047.1| ribonuclease H, mammalian HI/archaeal HII subfamily
[Aciduliprofundum sp. MAR08-339]
gi|432135612|gb|AGB04881.1| ribonuclease H, mammalian HI/archaeal HII subfamily
[Aciduliprofundum sp. MAR08-339]
Length = 213
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 71/212 (33%), Positives = 113/212 (53%), Gaps = 29/212 (13%)
Query: 18 GIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGW 77
G+DEAGRGPV+GPMV + C+ + L L DSK L ++RE+L ++++ S
Sbjct: 4 GVDEAGRGPVIGPMVVAGV---CASRDALIGLGVKDSKKLSPKRREKLAKEIRKIAS-QI 59
Query: 78 AVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG-DAEKYQ 136
V +++P E+ + + ++ LN+I + +I+++ + VY+D D E++
Sbjct: 60 IVLVVEPEEIDSL---RREMTLNDIEVELFARIISKMND-----EVVYVDAADVDEERFA 111
Query: 137 AKLSQRFPSIKFVVSK-KADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 195
+++ + ++SK KAD LYP VS ASI+AKV RDR I EE + M +FGSG
Sbjct: 112 REIALKVRKDVNIISKHKADLLYPEVSAASIIAKVERDR-----IIEELKKKMG-DFGSG 165
Query: 196 YPGDHKHIIF---------GFPSLVRFSWGTC 218
YP D + + P VR SW +
Sbjct: 166 YPADRRTKEYLEEYFNEHGDLPPNVRRSWKSA 197
>gi|242398404|ref|YP_002993828.1| Ribonuclease HII [Thermococcus sibiricus MM 739]
gi|259494074|sp|C6A1I4.1|RNH2_THESM RecName: Full=Ribonuclease HII; Short=RNase HII
gi|242264797|gb|ACS89479.1| Ribonuclease HII [Thermococcus sibiricus MM 739]
Length = 224
Score = 94.0 bits (232), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 74/218 (33%), Positives = 109/218 (50%), Gaps = 38/218 (17%)
Query: 18 GIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGW 77
GIDEAGRGPV+GP+V + S + L DSK L +KREELFE +
Sbjct: 5 GIDEAGRGPVVGPLVIAAVVIDESKIEKFEALGVKDSKKLSPKKREELFEKI-------- 56
Query: 78 AVDIIDPR---ELSAKMLNKNKINLNEISHDSAIGLITRVLN-IGILLTEVYLDTVG-DA 132
++++D ELS + ++K + +N D + +VLN + I VY+D +
Sbjct: 57 -IELVDDYFILELSPEDIDKREGTMN----DFEVENFAKVLNSLKIKPDLVYIDAADVNE 111
Query: 133 EKYQAKLSQR---FPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH 189
E++ + ++ +P K + KADS Y V+ ASI+AKVTRD+ + E + ++
Sbjct: 112 ERFGIVVREKLSFYP--KIIAEHKADSKYIPVAAASILAKVTRDKAI------ERLKEIY 163
Query: 190 RNFGSGYPGDHKHIIF---------GFPSLVRFSWGTC 218
N GSGYP D F FP +VR SW T
Sbjct: 164 GNIGSGYPSDPITRKFLEEYYKEHGSFPPVVRRSWKTL 201
>gi|73670221|ref|YP_306236.1| ribonuclease HII [Methanosarcina barkeri str. Fusaro]
gi|97182902|sp|Q468N6.1|RNH2_METBF RecName: Full=Ribonuclease HII; Short=RNase HII
gi|72397383|gb|AAZ71656.1| RNase HII [Methanosarcina barkeri str. Fusaro]
Length = 224
Score = 94.0 bits (232), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 73/222 (32%), Positives = 108/222 (48%), Gaps = 33/222 (14%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDEAG+GPV+GPM G + S L L ADSK L +KRE+L +K +
Sbjct: 3 IAGIDEAGKGPVIGPMCIGGVKIEESRAHILKVLGVADSKKLTPKKREQLAAQIK-KHAD 61
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG-DAEK 134
G+ V + P ++ + + +NEI + ++VL + +Y D +AE+
Sbjct: 62 GFFVLEVSPSQIDEL---RKIMTMNEI----MVVCFSKVLE-QLKPDLLYADAADVNAER 113
Query: 135 YQAKLSQRF--------PSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAE 186
+ + +++ I+ + +AD+ YPVVS ASI+AKV RD + EE +
Sbjct: 114 FATNIRKQYSKTNPDHAKEIEIISMHQADATYPVVSAASIIAKVRRDE-----LIEELKK 168
Query: 187 NMHRNFGSGYPGDHKHIIF----------GFPSLVRFSWGTC 218
+FGSGYP D K F FP +VR SW T
Sbjct: 169 EWGLDFGSGYPSDPKTKEFLLNWGKEHSGEFPEIVRQSWQTV 210
>gi|124027720|ref|YP_001013040.1| ribonuclease HII [Hyperthermus butylicus DSM 5456]
gi|189043606|sp|A2BL34.1|RNH2_HYPBU RecName: Full=Ribonuclease HII; Short=RNase HII
gi|123978414|gb|ABM80695.1| ribonuclease HII [Hyperthermus butylicus DSM 5456]
Length = 240
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 73/213 (34%), Positives = 104/213 (48%), Gaps = 29/213 (13%)
Query: 17 MGIDEAGRGPVLGPMVY-GCLYCPCSYQQTLATLNFADSKTLKEEKREELF-EDLKVNDS 74
+GIDEAGRGPV+GPMV G C + L L DSK L R +L+ E L+V +
Sbjct: 10 IGIDEAGRGPVIGPMVVVGVAVCSNDIDK-LVALGVRDSKQLTPVVRAKLYGEILRV--A 66
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
+ + + P L A +NLN++ ++ + +R+ + VY+D VG EK
Sbjct: 67 LHSVIVKLPPALLDA-------VNLNQLEVETFEYIASRIAGVHDSPEAVYVDAVGSPEK 119
Query: 135 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGS 194
A+LS R ++ + AD YP+VS ASIVAKV RD +R ++ GS
Sbjct: 120 LAARLSGRL-GVRVIAEPGADKTYPIVSAASIVAKVVRDAEIR------MLRRLYGVRGS 172
Query: 195 GYPGDHKHIIF----------GFPSLVRFSWGT 217
GYP D + I + P VR +W T
Sbjct: 173 GYPTDPETIAWLAEEYRRNPANPPWFVRRTWST 205
>gi|88191784|pdb|1X1P|A Chain A, Crystal Structure Of Tk-Rnase Hii(1-197)-A(28-42)
Length = 212
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 74/215 (34%), Positives = 105/215 (48%), Gaps = 28/215 (13%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDEAGRGPV+GPMV + + L L DSK L ++RE+LF N+ +
Sbjct: 3 IAGIDEAGRGPVIGPMVIAAVVVDENSLPKLEELKVRDSKKLTPKRREKLF-----NEIL 57
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLN-IGILLTEVYLDTVG-DAE 133
G D + EL ++ + LNE ++ + LN + + +Y D D E
Sbjct: 58 GVLDDYVI-LELPPDVIGSREGTLNEFEVEN----FAKALNSLKVKPDVIYADAADVDEE 112
Query: 134 KYQAKLSQRFPSIKFVVSK-KADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF 192
++ +L +R VV+K KAD ++PVVS ASI+AKVTRDR + E + +
Sbjct: 113 RFARELGERLNFEAEVVAKHKADDIFPVVSAASILAKVTRDRAV------EKLKEEYGEI 166
Query: 193 GSGYPGDHKHIIF---------GFPSLVRFSWGTC 218
GSGYP D + F FP +VR G
Sbjct: 167 GSGYPSDPRTRAFLENYYREHGEFPPIVRKGAGAI 201
>gi|345005256|ref|YP_004808109.1| ribonuclease HII [halophilic archaeon DL31]
gi|344320882|gb|AEN05736.1| ribonuclease HII [halophilic archaeon DL31]
Length = 217
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 68/217 (31%), Positives = 99/217 (45%), Gaps = 30/217 (13%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
++G DEAG+GP LGPMV G + + DSK L +REEL L+ + +
Sbjct: 2 LVGADEAGKGPALGPMVAGAVRA----DRADLPSGLDDSKKLSPARREELATALRAHPDI 57
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
AV + P + ++ + ++N + + +T V G L DT DAE++
Sbjct: 58 RVAVATVPP-----ERIDDPETDMNSLGVAAQAEAVTAVAEPGDDLFADAADT--DAERF 110
Query: 136 QAKLSQRF-----PSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHR 190
+L +++ AD YPVVS AS+VAKV RDR + E E R
Sbjct: 111 GRRLRDTILDGDGSALEVTAEHGADESYPVVSAASVVAKVERDR-----LMAEIDEEHGR 165
Query: 191 NFGSGYPGDH--KHIIFGF-------PSLVRFSWGTC 218
GSGYP D + + G+ P+ R SW TC
Sbjct: 166 AIGSGYPSDPTTRSFLEGYVAEYGELPACARASWATC 202
>gi|440493662|gb|ELQ76104.1| Ribonuclease HI [Trachipleistophora hominis]
Length = 414
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 67/201 (33%), Positives = 95/201 (47%), Gaps = 48/201 (23%)
Query: 48 TLNFADSKTLKEEKREELFEDLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSA 107
T+ DSK L ++RE ++E + S W + P+ +S +M ++ NLN+IS +
Sbjct: 204 TIRMCDSKQLLPKQRESIYEQIITTHSYVWYA--LHPQYISTEM---DRRNLNDISISAV 258
Query: 108 IGLITRVLNI--------------------------GILLTEVYLDTVGDAEKYQAKLSQ 141
I ++T +LN +T+VY+D +G KY+ L Q
Sbjct: 259 IHILTTILNALDQPNSNTNQPNSNTKPSRKDNQTRAAHTITKVYVDALGSTNKYEHILRQ 318
Query: 142 RFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDHK 201
FP I FVV KADS Y V GASIVAKV RD LR + + GSGYP D +
Sbjct: 319 HFPHIPFVVEYKADSTYRCVGGASIVAKVVRDDLLRRFSVQ---------CGSGYPSDWR 369
Query: 202 HIIFGFPS------LVRFSWG 216
+ G+ S +VRF W
Sbjct: 370 TV--GWLSTNRESEMVRFKWA 388
>gi|410669623|ref|YP_006921994.1| ribonuclease HII [Methanolobus psychrophilus R15]
gi|409168751|gb|AFV22626.1| ribonuclease HII [Methanolobus psychrophilus R15]
Length = 214
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 73/230 (31%), Positives = 110/230 (47%), Gaps = 40/230 (17%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDEAG+GPV+GPM G + S L L ADSK L +KRE L ++
Sbjct: 3 IAGIDEAGKGPVIGPMCVGGVLMEESRINALKNLGVADSKKLTPKKREMLALQIE----- 57
Query: 76 GWAVDI----IDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGD 131
+A+ + I P+++ + + +NEI + +RVL + ++D
Sbjct: 58 KYALQVFVLEITPQQIDEL---RKLMTMNEI----MVLAFSRVLE-ELHPNVAFVDAADV 109
Query: 132 AE---------KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFE 182
+E +Y+ K S++ + + +AD +YP+VS ASIVAKV RD + E
Sbjct: 110 SEERFGKRLLLEYEKKHSEKAGCMSIISKHQADCIYPIVSAASIVAKVRRDS-----LIE 164
Query: 183 ETAENMHRNFGSGYPGDHKHIIF---------GFPSLVRFSWGTCTSHFK 223
E + + +FGSGYP D K F P +VR+SW T + K
Sbjct: 165 ELKKEIGVDFGSGYPSDPKTKQFLQDWFKEHGELPDIVRYSWKTAENVMK 214
>gi|119719808|ref|YP_920303.1| ribonuclease HII [Thermofilum pendens Hrk 5]
gi|189043673|sp|A1RYM0.1|RNH2_THEPD RecName: Full=Ribonuclease HII; Short=RNase HII
gi|119524928|gb|ABL78300.1| RNase HII [Thermofilum pendens Hrk 5]
Length = 213
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 70/218 (32%), Positives = 101/218 (46%), Gaps = 29/218 (13%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+ GIDEAGRGP+LGPMV + CP L + DSK L +R L + SV
Sbjct: 4 VAGIDEAGRGPMLGPMVVAIVVCPEEKVPLLRNMGVRDSKALSPRRRLLLSRAIP---SV 60
Query: 76 GWAVD--IIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA- 132
G +V +++P+E+ + + NLN + LI VL+ G L VY+D+
Sbjct: 61 GCSVKVRVVEPQEIDCAVRGECYENLNHLEAAVFAQLINEVLSEGELEV-VYMDSPDPVP 119
Query: 133 ----EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENM 188
E+ +A L + ++ V AD Y +V ASIVAK TRD + +
Sbjct: 120 SRFEERVRALLKGQ---VRIVAENGADEKYTIVGAASIVAKETRDEII------NALKKT 170
Query: 189 HRNFGSGYPGDHKHIIFG---------FPSLVRFSWGT 217
+ +FGSGYP D + + F P + R W T
Sbjct: 171 YGDFGSGYPSDPRTLRFAEEWVRKHGEPPPIARKEWAT 208
>gi|41614859|ref|NP_963357.1| hypothetical protein NEQ063 [Nanoarchaeum equitans Kin4-M]
gi|74579762|sp|Q74MH3.1|RNH2_NANEQ RecName: Full=Ribonuclease HII; Short=RNase HII
gi|40068583|gb|AAR38918.1| NEQ063 [Nanoarchaeum equitans Kin4-M]
Length = 200
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 95/184 (51%), Gaps = 20/184 (10%)
Query: 18 GIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGW 77
G+DEAGRGP++GPMV + Y L L DSK L +E+REELF ++ N V +
Sbjct: 5 GVDEAGRGPIIGPMVIALVIGDSGY---LKELGVKDSKLLTKEQREELFNEIVKNSLVKY 61
Query: 78 AVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQA 137
+I+ P + ++ NLNE+ LI + + ++ + +D+ E Y+
Sbjct: 62 --EIVSPSLI-------DRYNLNELEAKVTANLINSIED---EISHIVIDSPERPENYKL 109
Query: 138 KLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYP 197
++ + +++K P+V+ ASIVAKV RDR + E+ E +FGSGYP
Sbjct: 110 RILKYLKKRVKIITKNKGEEDPLVAAASIVAKVIRDREI-----EKIKEQTGIDFGSGYP 164
Query: 198 GDHK 201
D +
Sbjct: 165 SDKR 168
>gi|47213806|emb|CAF92579.1| unnamed protein product [Tetraodon nigroviridis]
Length = 115
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 43/81 (53%), Positives = 54/81 (66%), Gaps = 1/81 (1%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL-KVND 73
C +GIDEAGRGPVLGPMVYG +CP S + L L ADSKTL E +RE LFE L +
Sbjct: 29 CCLGIDEAGRGPVLGPMVYGICFCPISRKDELKDLKVADSKTLTEAEREALFEKLDEAKS 88
Query: 74 SVGWAVDIIDPRELSAKMLNK 94
+GWA+ ++ P +S ML +
Sbjct: 89 YIGWALQVLSPNTISTSMLQR 109
>gi|18978153|ref|NP_579510.1| ribonuclease HII [Pyrococcus furiosus DSM 3638]
gi|397652571|ref|YP_006493152.1| ribonuclease HII [Pyrococcus furiosus COM1]
gi|24638181|sp|Q8U036.1|RNH2_PYRFU RecName: Full=Ribonuclease HII; Short=RNase HII
gi|18893958|gb|AAL81905.1| RNaseH II [Pyrococcus furiosus DSM 3638]
gi|393190162|gb|AFN04860.1| ribonuclease HII [Pyrococcus furiosus COM1]
Length = 224
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 66/214 (30%), Positives = 102/214 (47%), Gaps = 26/214 (12%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDEAGRGP +GP+V + + L + DSK L +R+ LF + + +
Sbjct: 3 IGGIDEAGRGPAIGPLVVATVVVDEKNIEKLRNIGVKDSKQLTPHERKNLFSQI-TSIAD 61
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG-DAEK 134
+ + I+ P E+ + N++ + + + L L I L +Y D DA +
Sbjct: 62 DYKIVIVSPEEIDNRSGTMNELEVEKFA------LALNSLQIKPAL--IYADAADVDANR 113
Query: 135 YQAKLSQRFP-SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG 193
+ + + +R K + KAD+ YPVVS ASI+AKV RD + E + + +FG
Sbjct: 114 FASLIERRLNYKAKIIAEHKADAKYPVVSAASILAKVVRDEEI------EKLKKQYGDFG 167
Query: 194 SGYPGDHKHIIF---------GFPSLVRFSWGTC 218
SGYP D K + FP +VR +W T
Sbjct: 168 SGYPSDPKTKKWLEEYYKKHNSFPPIVRRTWETV 201
>gi|296241926|ref|YP_003649413.1| ribonuclease HII [Thermosphaera aggregans DSM 11486]
gi|296094510|gb|ADG90461.1| ribonuclease HII [Thermosphaera aggregans DSM 11486]
Length = 248
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 71/216 (32%), Positives = 115/216 (53%), Gaps = 30/216 (13%)
Query: 16 IMGIDEAGRGPVLGPMVY-GCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
++GIDEAGRGP++G MV G + +++ L+ ++ DSKT+ R E F L+ N S
Sbjct: 5 LIGIDEAGRGPLVGDMVVAGVMVEEKVFEELLSRISIRDSKTMTPRGRFESFLALE-NSS 63
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLI----TRVLNIGILLTEVYLDTVG 130
+ +D + P+E+ ++ NLN ++ S + +I T + + L EVY+D V
Sbjct: 64 ISVYLDYLSPKEI-------DRENLNMLTAGSIVRIIQFFNTLLSSYDERLVEVYIDEVK 116
Query: 131 DAEKYQAKLSQRF--PSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENM 188
+K K + K V +ADS YP+VS ASI+AKV+RD ++ + ++
Sbjct: 117 GVKKVVEKECSKLFGKRCKLVFESQADSKYPIVSLASIIAKVSRDLSI------SSNTSV 170
Query: 189 HRNFGSGYPGDHKHIIF---------GFPSLVRFSW 215
H +FGSGYP D + +++ P +VR SW
Sbjct: 171 HGDFGSGYPSDPRAVLWLERVYNSLEHPPPIVRKSW 206
>gi|409096060|ref|ZP_11216084.1| ribonuclease HII [Thermococcus zilligii AN1]
Length = 224
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 71/215 (33%), Positives = 104/215 (48%), Gaps = 28/215 (13%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDEAGRGPV+GPMV + L L DSK L +RE+LF+++ +
Sbjct: 5 IAGIDEAGRGPVIGPMVIAAVVFDEDSIPNLKALGVRDSKKLTPRRREKLFDEI-----L 59
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLN-IGILLTEVYLDTVGDAEK 134
G A D + ELS + ++ + LNE ++ + LN + + +Y+D E+
Sbjct: 60 GIADDYVI-LELSPEEIDSREGTLNEFEVNN----FAKALNSLKVKPDVIYIDAADVREE 114
Query: 135 YQAKLSQRFPSIK--FVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF 192
+ +F + K + KAD +P VS ASI+AKVTRDR + E +
Sbjct: 115 RFGEEIGKFLNFKAEIIAEHKADDKFPPVSAASILAKVTRDRAI------ERLREEYGEI 168
Query: 193 GSGYPGDH--KHIIFG-------FPSLVRFSWGTC 218
GSGYP D + + G FP +VR +W T
Sbjct: 169 GSGYPSDPRTREFLMGYYKKHGEFPPVVRRTWETL 203
>gi|312137140|ref|YP_004004477.1| rnase hii [Methanothermus fervidus DSM 2088]
gi|311224859|gb|ADP77715.1| RNase HII [Methanothermus fervidus DSM 2088]
Length = 200
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 78/214 (36%), Positives = 107/214 (50%), Gaps = 34/214 (15%)
Query: 16 IMGIDEAGRGPVLGPMVY-GCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
I+GIDEAGRGPVLGP++ G L + L LN DSK L +R+ L +++K S
Sbjct: 3 ILGIDEAGRGPVLGPLIVCGVLV---DDENKLKKLNVRDSKLLSPRRRKILAKEIK-KVS 58
Query: 75 VGWAVDI----IDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG 130
+ V I ID ++ I+LNEI A+ I + N +V +D++
Sbjct: 59 KCFIVKIQAYEIDKLRIAG-------ISLNEIER-IAMSKIIKNAN----PKKVIVDSID 106
Query: 131 DAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHR 190
K K Q+ +I+ +V KAD YPVVS ASIVAKV RD + E+ + +
Sbjct: 107 IKPKRLKKKLQK-ENIEVIVEHKADEKYPVVSAASIVAKVERDSEI-----EKLKKRYNC 160
Query: 191 NFGSGYPGDHKHIIF-------GFPSLVRFSWGT 217
+ GSGYP D K I F P VR +W T
Sbjct: 161 DLGSGYPNDPKTIKFLKKFKRSELPDFVRKTWNT 194
>gi|288931994|ref|YP_003436054.1| ribonuclease HII [Ferroglobus placidus DSM 10642]
gi|288894242|gb|ADC65779.1| ribonuclease HII [Ferroglobus placidus DSM 10642]
Length = 211
Score = 90.5 bits (223), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 72/215 (33%), Positives = 107/215 (49%), Gaps = 35/215 (16%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDEAG+GPV+GP+V + C + L L DSK L EKR+EL E LK + V
Sbjct: 3 IAGIDEAGKGPVIGPLVVCGVSCEEKDVEALKKLGVKDSKRLSPEKRKELAEKLK--EIV 60
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
+I P EL++KM K +NEI ++ + +I++ LN + V++D+ +
Sbjct: 61 EHETIVISPEELNSKM---EKTTINEILKEACVEIISK-LNPDV----VFVDS------F 106
Query: 136 QAKLSQRFPSIKFVVSKKADSLYP-----VVSGASIVAKVTRDRTLRGWIFEETAENMHR 190
K + +K + KK +++ VV+ ASI+AK RD + E + +
Sbjct: 107 DVKPERLEEELKRLTGKKVVAMHEGEREVVVAAASIIAKCLRDEII------EELKREYG 160
Query: 191 NFGSGYPGDHK-------HIIFG-FPSLVRFSWGT 217
+FGSGY D K I G P +VR W T
Sbjct: 161 DFGSGYASDEKTRRWLEEQIKRGKIPEIVRKRWKT 195
>gi|91772495|ref|YP_565187.1| ribonuclease HII [Methanococcoides burtonii DSM 6242]
gi|121691891|sp|Q12YN9.1|RNH2_METBU RecName: Full=Ribonuclease HII; Short=RNase HII
gi|91711510|gb|ABE51437.1| Ribonuclease HII [Methanococcoides burtonii DSM 6242]
Length = 213
Score = 90.5 bits (223), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 76/227 (33%), Positives = 108/227 (47%), Gaps = 45/227 (19%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I+GIDEAG+GPV+GPM G + L L ADSK L ++R L +K +
Sbjct: 3 IIGIDEAGKGPVIGPMCIGGVRIDEDKSNALKNLGVADSKKLSPKRRVHLAAQIK-KYAD 61
Query: 76 GWAVDIIDPRELSA--KMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV-GDA 132
GW V + P ++ K+++ N I VL G ++ E+ D + DA
Sbjct: 62 GWFVYEVSPNQIDELRKLMSMNDI---------------MVLAFGSVIEELPSDKIYADA 106
Query: 133 -----EKYQAKL----SQRFPSIKF--VVSKK-ADSLYPVVSGASIVAKVTRDRTLRGWI 180
E++ +L ++ P + V+SK AD L+PVVS ASI+AKV RD +
Sbjct: 107 ADVKEERFGKRLFDNYMEKHPDVSPPEVISKHGADDLFPVVSAASILAKVRRDE-----L 161
Query: 181 FEETAENMHRNFGSGYPGDHKHIIF---------GFPSLVRFSWGTC 218
E+ +M + GSGYP D K F FP +VR SW T
Sbjct: 162 IEKIKVDMGVDIGSGYPSDPKTKKFLENWYRENSSFPDIVRHSWKTA 208
>gi|84490178|ref|YP_448410.1| ribonuclease HII [Methanosphaera stadtmanae DSM 3091]
gi|115305551|sp|Q2NEI6.1|RNH2_METST RecName: Full=Ribonuclease HII; Short=RNase HII
gi|84373497|gb|ABC57767.1| RnhB [Methanosphaera stadtmanae DSM 3091]
Length = 212
Score = 90.1 bits (222), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 68/211 (32%), Positives = 101/211 (47%), Gaps = 23/211 (10%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I+GIDEAGRG V+GP+V G + + L + DSK L +KR + +K +
Sbjct: 9 ILGIDEAGRGSVIGPLVIGGVLMKKKKIRFLNRIGVKDSKQLNMKKRTIISRKIK---KI 65
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAE-K 134
II P + N N INLNEI + + I +++ Y+D + E +
Sbjct: 66 AQFKTIIIPAHTIDEKRN-NDINLNEIETE-GMEEIIKIMK----PNACYIDCIDVRENR 119
Query: 135 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGS 194
+ K+ + P++ V KAD Y +VS ASI+AKV RD+ L E + + GS
Sbjct: 120 FHDKIQKINPNMTVVTEHKADETYKIVSAASIIAKVERDKQL------EIIRQEYGSVGS 173
Query: 195 GYPGDHKHIIF-------GFPSLVRFSWGTC 218
GYP D I + FP ++R +W T
Sbjct: 174 GYPSDKNTINYLKTIKNNQFPPIIRKTWKTI 204
>gi|14591420|ref|NP_143500.1| ribonuclease HII [Pyrococcus horikoshii OT3]
gi|7227917|sp|O59351.1|RNH2_PYRHO RecName: Full=Ribonuclease HII; Short=RNase HII
gi|50513813|pdb|1UAX|A Chain A, Crystal Structure Of The Ribonuclease H2 From Pyrococcus
Horikoshii Ot3
gi|50513814|pdb|1UAX|B Chain B, Crystal Structure Of The Ribonuclease H2 From Pyrococcus
Horikoshii Ot3
gi|3258079|dbj|BAA30762.1| 220aa long hypothetical ribonuclease H II [Pyrococcus horikoshii
OT3]
Length = 220
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 110/214 (51%), Gaps = 26/214 (12%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+ G+DEAGRGPV+GP+V G + L + DSK L +RE+LF L ++
Sbjct: 3 VAGVDEAGRGPVIGPLVIGVAVIDEKNIERLRDIGVKDSKQLTPGQREKLFSKL-IDILD 61
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG-DAEK 134
+ V ++ P+E+ + + N++ A + + ++ I ++Y+D+ D ++
Sbjct: 62 DYYVLLVTPKEIDERHHSMNELE--------AEKFVVALNSLRIKPQKIYVDSADVDPKR 113
Query: 135 YQAKLSQRFPSIKFVVSK-KADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG 193
+ + + V+++ KAD+ Y +VS ASI+AKVTRDR + E + + FG
Sbjct: 114 FASLIKAGLKYEATVIAEHKADAKYEIVSAASIIAKVTRDREI------EKLKQKYGEFG 167
Query: 194 SGYPGDHK--------HIIFG-FPSLVRFSWGTC 218
SGYP D + + +G FP +VR +W T
Sbjct: 168 SGYPSDPRTKEWLEEYYKQYGDFPPIVRRTWETA 201
>gi|297618794|ref|YP_003706899.1| ribonuclease HII [Methanococcus voltae A3]
gi|297377771|gb|ADI35926.1| ribonuclease HII [Methanococcus voltae A3]
Length = 264
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 79/236 (33%), Positives = 113/236 (47%), Gaps = 34/236 (14%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATL---NFADSKTLKEEKREELFEDLK 70
P ++G+DEAGRGPV+GPMV + ++ T + DSK L ++KRE L+++++
Sbjct: 17 PKVVGLDEAGRGPVIGPMVIAGVLLKMDNKENAKTFYDLDLKDSKKLSKKKRETLYKEIQ 76
Query: 71 VNDSVGWAVDIIDPRELSAKM--LNKNKINLNEIS------HDSAIGLITRVLNIGILLT 122
V II +E+ A+M +N NKI LN S + GL + G L
Sbjct: 77 KLAKVEKV--IITAKEIDAQMNIINLNKIELNGFSSIINKFYKDIYGLDENKRDSGFL-- 132
Query: 123 EVYLDTVGDAE-----KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLR 177
Y+D E + +AKL + +I + KAD Y +VS ASI+AKV RD +
Sbjct: 133 -TYIDACSSNETSFSNQLKAKLINK--NIDLIAEHKADDNYKIVSAASIIAKVNRDNIID 189
Query: 178 GWIFEETAENMHRNFGSGYPGDHKHIIF---------GFPSLVRFSWGTCTSHFKD 224
+ E E + GSGYP D K F P +VRFSW T K+
Sbjct: 190 S--YNEKYEALGYTIGSGYPSDPKTKKFLRQYLEDNKELPDIVRFSWNTTKKLLKE 243
>gi|347524319|ref|YP_004781889.1| ribonuclease HII [Pyrolobus fumarii 1A]
gi|343461201|gb|AEM39637.1| ribonuclease HII [Pyrolobus fumarii 1A]
Length = 234
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 67/216 (31%), Positives = 103/216 (47%), Gaps = 31/216 (14%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+MG+DEAGRGP++GPMV + + DSK L +RE L ++ +V
Sbjct: 7 VMGVDEAGRGPIIGPMVIAGVAMCTEDVGNIRLAGVDDSKLLSRAERERLLSLIE-RSAV 65
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNI-GILLTEVYLDTVGDAEK 134
+ PR + +++NLN I ++ L+ R ++I G L +VY+D VGD +
Sbjct: 66 YVGRVYVHPRLI-------DEVNLNVIERNTIAFLVGRAMDILGESLKKVYVDAVGDPRQ 118
Query: 135 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF-- 192
A + + + + KAD+ Y +V ASI+AKV RD + E + R +
Sbjct: 119 IIAAIRRAGFMGEVIAEPKADARYTIVGAASIIAKVYRDAVI---------EELRREYGV 169
Query: 193 -GSGYPGDHKHIIF----------GFPSLVRFSWGT 217
GSGYP D + + + P VR SWGT
Sbjct: 170 RGSGYPTDPETLAWIREAYEENPEEPPWFVRRSWGT 205
>gi|383318933|ref|YP_005379774.1| ribonuclease H, mammalian HI/archaeal HII subfamily [Methanocella
conradii HZ254]
gi|379320303|gb|AFC99255.1| ribonuclease H, mammalian HI/archaeal HII subfamily [Methanocella
conradii HZ254]
Length = 217
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 69/224 (30%), Positives = 108/224 (48%), Gaps = 27/224 (12%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I G+DEAGRGPV+GP+V + + + + DSK L ++REEL LK
Sbjct: 2 IAGVDEAGRGPVIGPLVVCGVAVSPRRLKAIEQMGLKDSKLLTPKRREELAVRLK--KIC 59
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEV-YLDTVG-DAE 133
+ ++ P E+ A+M + +N E+ + + I L +V YLD +AE
Sbjct: 60 SHELVVVSPEEIDARMAGGSTLNGIEVECFAKV--------IEALRPKVAYLDACDVNAE 111
Query: 134 KYQAKLSQRFP-SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF 192
++ + +R ++ V AD YP+VS ASI+AKV RD + ++ +E + +
Sbjct: 112 RFGLNVRKRLSFEVEVVSRHNADKDYPIVSAASILAKVHRD-----ALVKKISETVGEDV 166
Query: 193 GSGYPGDHKHIIF---------GFPSLVRFSWGTCTSHFKDIVE 227
GSGYP D I F P VR SW T ++ D ++
Sbjct: 167 GSGYPHDPITIKFLKSYYAKNGEMPPFVRKSWKTTSAVISDCLQ 210
>gi|305663629|ref|YP_003859917.1| ribonuclease HII [Ignisphaera aggregans DSM 17230]
gi|304378198|gb|ADM28037.1| ribonuclease HII [Ignisphaera aggregans DSM 17230]
Length = 232
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 69/220 (31%), Positives = 104/220 (47%), Gaps = 27/220 (12%)
Query: 13 NPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVN 72
N I GIDEAGRGP++G M + + L + DSK L EKR + F + +
Sbjct: 2 NIHICGIDEAGRGPLIGDMFIAMIVINTDALKYLENIGVRDSKRLSREKRIKFFP-IIIE 60
Query: 73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
+S + + P +L + N NK+ LN + LI + ++I ++E+Y+D +
Sbjct: 61 NSELVLISRLTPSQLDEE--NINKLELNTVCR-----LIKKSISIVSTISEIYIDAFANP 113
Query: 133 EKYQAKLSQRF----PSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENM 188
K ++ SI + AD+ Y VV ASIVAKV RD + + + +
Sbjct: 114 NKLLHYINSNCIASNRSINVYIEHGADNKYVVVGAASIVAKVLRDTHI------DNLKKV 167
Query: 189 HRNFGSGYPGDHKHIIF---------GFPSLVRFSWGTCT 219
+ +FGSGYP D K I + P +VR SW T T
Sbjct: 168 YGDFGSGYPSDKKTIEWLRNYYAKHNALPPIVRKSWSTIT 207
>gi|291333356|gb|ADD93062.1| hypothetical protein [uncultured archaeon MedDCM-OCT-S05-C10]
Length = 830
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 75/225 (33%), Positives = 109/225 (48%), Gaps = 29/225 (12%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I+G DEAGRGPVLGP+V + P + Q L L DSK L +KREEL + ++
Sbjct: 4 IVGADEAGRGPVLGPLVVAAVAIPATDLQRLIDLGVDDSKALSPKKREELNQ--IIHQEP 61
Query: 76 GWAVDIID--PRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAE 133
W V II+ P + M K LN++ D G L + + E+ LD E
Sbjct: 62 TWQVSIIECSPERIDVTM---EKKTLNDLEVD-LFGEAIDSLEVE-RIEELILDACDTNE 116
Query: 134 -KYQAKLSQRFPS---IKFVVSKK-ADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENM 188
++ ++ + S ++ V+SK AD+ PVV ASIVAKV RD+ + + A++
Sbjct: 117 ARFGRNVASKISSGKIVETVISKHGADAENPVVGAASIVAKVHRDK-----VIQSIAKDR 171
Query: 189 HRNFGSGYPGDHKHIIFGFPSL---------VRFSWGTCTSHFKD 224
N GSGYP D + P L +R+ W T H+ +
Sbjct: 172 GFNVGSGYPSD-PNTRSALPRLLSQEQPDLDLRWGWKTVEKHWSE 215
>gi|336122129|ref|YP_004576904.1| ribonuclease HII [Methanothermococcus okinawensis IH1]
gi|334856650|gb|AEH07126.1| ribonuclease HII [Methanothermococcus okinawensis IH1]
Length = 305
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 81/284 (28%), Positives = 117/284 (41%), Gaps = 69/284 (24%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVG 76
+G+DEAGRGPVLGPMV + L DSK L KREEL++ + N V
Sbjct: 41 LGLDEAGRGPVLGPMVIALVKATEKDLPKFDELGLKDSKKLSRHKREELYKIIMNNYEVK 100
Query: 77 WAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLN-------------------- 116
I++ +++ M K NLN+I LI VL
Sbjct: 101 SI--ILEAKDIDKMM---EKTNLNKIEIMVFSKLINSVLKEEYKDYKNKNHKLNNKLNNN 155
Query: 117 ---------------IGILLTEVYLDTVGDAEK-----YQAKLSQRFPSIKFVVSKKADS 156
I ++Y+D EK ++KL +IK + KAD
Sbjct: 156 EVNDKINSNKVNNNKINNKKIDIYIDACSSNEKAFSNQIKSKLVVYNDNIKIIAEHKADD 215
Query: 157 LYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDHKHIIF---------GF 207
Y +VS ASIVAKV RD+ + + + ++ GSGYP D I +
Sbjct: 216 KYKIVSAASIVAKVIRDKIIDNY------KEIYGEIGSGYPSDKTTINYLKNYVKEHGTL 269
Query: 208 PSLVRFSWGTCTSHFKDIVEVLWESDEMDEDVSSRRSGKRQLKL 251
P + R SW T + K+ DEM++ + R+ +Q+KL
Sbjct: 270 PEIARKSWKTSKNILKEF------EDEMNK---TNRNNSQQMKL 304
>gi|315230435|ref|YP_004070871.1| ribonuclease HII [Thermococcus barophilus MP]
gi|315183463|gb|ADT83648.1| ribonuclease HII [Thermococcus barophilus MP]
Length = 227
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 70/217 (32%), Positives = 106/217 (48%), Gaps = 36/217 (16%)
Query: 18 GIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGW 77
GIDEAGRGPV+GP+V + L L DSK L +RE+LF ++
Sbjct: 8 GIDEAGRGPVIGPLVIAAVVIDEKNLSKLEALGVRDSKKLTPRRREKLFNEI-------- 59
Query: 78 AVDIIDPR---ELSAKMLNKNKINLNEISHDSAIGLITRVLN-IGILLTEVYLDTVGDAE 133
++++D ELS + +++ + +NE ++ + RVLN + + +Y+D E
Sbjct: 60 -IELLDDYAIIELSPEQIDEREGTMNEFEIENFV----RVLNSLKVKPDVLYIDAADIKE 114
Query: 134 KYQAKLSQR---FPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHR 190
K ++ + F S K + KAD+ Y VS ASI+AKVTRD+ + E + +
Sbjct: 115 KRFGEIIGKGLNF-SPKIIAEHKADAKYLPVSAASILAKVTRDKAI------EKLKKQYG 167
Query: 191 NFGSGYPGDHKHIIF---------GFPSLVRFSWGTC 218
GSGYP D + F FP +VR SW T
Sbjct: 168 EIGSGYPSDPRTRKFLEEYYKEHGEFPPIVRKSWKTL 204
>gi|327401115|ref|YP_004341954.1| ribonuclease HII [Archaeoglobus veneficus SNP6]
gi|327316623|gb|AEA47239.1| ribonuclease HII [Archaeoglobus veneficus SNP6]
Length = 212
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 76/224 (33%), Positives = 110/224 (49%), Gaps = 32/224 (14%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQ--TLATLNFADSKTLKEEKREELFEDLKVND 73
+ GIDEAG+GPV+GPMV C C CS ++ L + DSK L ++REEL ++K
Sbjct: 4 VAGIDEAGKGPVIGPMVV-CGVC-CSEEELVELEKIGVRDSKRLSPKRREELAREIKKLS 61
Query: 74 SVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAE 133
+V V ++P +L M K +NEI D +I LN + ++D+
Sbjct: 62 NV--YVIKLEPEKLDRLMEKK---TINEILTDCYAEIINE-LNPDL----TFVDSPDVIP 111
Query: 134 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG 193
+ ++ ++ + +AD L PVVS ASIVAKV RDR + E+ + + +FG
Sbjct: 112 ERLSEALKKRTGKEVKAMHRADVLKPVVSAASIVAKVERDREI-----EKIKKELGVDFG 166
Query: 194 SGYPGDHKHIIF---------GFPSLVRFSWGT----CTSHFKD 224
SGY D + I F FP VR SW T C +D
Sbjct: 167 SGYASDKRTIEFLKEYFKEHGRFPPYVRRSWKTLDRICQQSLED 210
>gi|282165631|ref|YP_003358016.1| ribonuclease HII [Methanocella paludicola SANAE]
gi|282157945|dbj|BAI63033.1| ribonuclease HII [Methanocella paludicola SANAE]
Length = 217
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 66/223 (29%), Positives = 110/223 (49%), Gaps = 25/223 (11%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDEAGRGPV+GPMV + + + ++ DSK L +KREE +K+ D
Sbjct: 2 IAGIDEAGRGPVIGPMVVCGVSVSEKKLRKIKSMGLKDSKLLTPKKREEFA--VKIKDVC 59
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG-DAEK 134
+ + ++ P + ++ +++NLNE+ + + +L + Y+D +AE+
Sbjct: 60 EYELVVVGPERIDSRA--NDELNLNELE----VECFSNILK-ALRPATAYVDACDVNAER 112
Query: 135 YQAKLSQRFP-SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG 193
+ + + ++ + AD YPVVS ASI+AKV RD ++ E +++ N G
Sbjct: 113 FGINVKKGLDFEVEVISRHNADRDYPVVSAASILAKVHRDALIK-----EICDSIGENVG 167
Query: 194 SGYPGDHKHIIF--GF-------PSLVRFSWGTCTSHFKDIVE 227
SGY D I F G+ P R SW T ++ D ++
Sbjct: 168 SGYSHDQVTIEFLKGYYKKNKCMPPFARKSWKTTSAIISDCLQ 210
>gi|88602504|ref|YP_502682.1| ribonuclease HII [Methanospirillum hungatei JF-1]
gi|115305550|sp|Q2FP80.1|RNH2_METHJ RecName: Full=Ribonuclease HII; Short=RNase HII
gi|88187966|gb|ABD40963.1| RNase HII [Methanospirillum hungatei JF-1]
Length = 212
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 75/217 (34%), Positives = 101/217 (46%), Gaps = 37/217 (17%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I G+DEAG+G VLGPMV + C + L L ADSK L + RE++ D+K
Sbjct: 2 ICGVDEAGKGSVLGPMVVAAVGC--TDMDDLIALGVADSKKLSSKSREKISADIKAQFPF 59
Query: 76 GWAVDII-DPRELSAKMLNKNKINLNEI---SHDSAIGLITRVLNIGILLTEVYLDTVG- 130
+ D EL + + +NEI SH A+ I + T Y+D
Sbjct: 60 SIVIRTAHDIDEL------RRTMTMNEIVARSHAEAL--------IPLNCTCAYVDACDV 105
Query: 131 DAEKYQAKLSQ-RFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH 189
E+Y+ +S P V KADSL+P VS ASI+AKV RDR I EE ++ +
Sbjct: 106 SEERYEETVSSFSPPDCTIVARHKADSLFPPVSAASIIAKVERDR-----IIEELSKE-Y 159
Query: 190 RNFGSGYPGDHKHIIF---------GFPSLVRFSWGT 217
+ GSGYP D I + P + R SW T
Sbjct: 160 GDIGSGYPSDPVTITYLTKYIRHHNQPPVIARSSWET 196
>gi|410720630|ref|ZP_11359984.1| RNase HII [Methanobacterium sp. Maddingley MBC34]
gi|410600757|gb|EKQ55282.1| RNase HII [Methanobacterium sp. Maddingley MBC34]
Length = 204
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 70/214 (32%), Positives = 97/214 (45%), Gaps = 30/214 (14%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKV---N 72
I+GIDEAGRG VLGP+V + + L L DSK + ++R L +K
Sbjct: 3 ILGIDEAGRGSVLGPLVVCGVAVENDRVKYLERLGLKDSKKVSPKRRIVLSRKIKRIAEC 62
Query: 73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG-D 131
+V ID L +NLNEI + I R++ T ++D++
Sbjct: 63 HTVHITAHDID-------TLRSRDVNLNEIEKIA----INRIIGDANAST-CFIDSMDVK 110
Query: 132 AEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRN 191
E+ ++L ++ V KAD YP+VS ASI+AKV RDR + + + N
Sbjct: 111 PERLTSELETMHSQLRVVAEHKADDRYPIVSAASIIAKVERDRAI------QDIRKTYEN 164
Query: 192 FGSGYPGDHKHIIF--------GFPSLVRFSWGT 217
GSGYP D K I F P VR SW T
Sbjct: 165 VGSGYPSDPKTIEFLKTMPPGEELPDFVRSSWAT 198
>gi|223476982|ref|YP_002581715.1| Ribonuclease HII [Thermococcus sp. AM4]
gi|214032208|gb|EEB73038.1| Ribonuclease HII [Thermococcus sp. AM4]
Length = 230
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 71/217 (32%), Positives = 101/217 (46%), Gaps = 32/217 (14%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL--KVND 73
+ GIDEAGRGPV+GPMV + L L DSK L +RE LF+++ +++D
Sbjct: 7 LAGIDEAGRGPVIGPMVIAAVVVDEDKLGNLEELGVKDSKKLTPRRRERLFDEIIAQLDD 66
Query: 74 SVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLN-IGILLTEVYLDTVGDA 132
V II EL + ++ K+ LNE ++ + LN + + VY+D
Sbjct: 67 YV-----II---ELWPEEIDSRKVTLNEFEVEN----FAKALNSLKVRPDVVYIDAADVK 114
Query: 133 EKYQAKLSQRFPSIK--FVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHR 190
E + R S K V +AD + VS ASI+AKV RDR + E + +
Sbjct: 115 EGRFGEAVGRLLSFKAEIVAEHRADDKFVPVSAASILAKVVRDRAI------ERLKREYG 168
Query: 191 NFGSGYPGDHKHIIF---------GFPSLVRFSWGTC 218
GSGYP D + F FP +VR +W T
Sbjct: 169 EIGSGYPSDPRTREFLEKYYREHGDFPPIVRKTWKTV 205
>gi|9664592|gb|AAF97195.1|AF268611_19 ribonuclease HII [uncultured marine group II euryarchaeote 37F11]
Length = 250
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 75/227 (33%), Positives = 109/227 (48%), Gaps = 39/227 (17%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
++G+DEAGRGPVLGP+V G L P + L DSK L KR+ ++ L N V
Sbjct: 7 LIGVDEAGRGPVLGPLVVGLLSIPKEDEYMLEEQCIEDSKHLSHAKRKLHYDWL--NQQV 64
Query: 76 ---GWAVDII--DPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG 130
GW VD I P + + K +N+ E+ L +LN L LD +
Sbjct: 65 TERGWYVDTIICKPNRIDNAVYAKG-LNILEVD------LFASILNRHHRLFTQELDILL 117
Query: 131 DA-----EKYQAKLSQR---FPSIK--FVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 180
DA E++ ++S+R +P +K + KAD+ + +V GASI+AKV RD +
Sbjct: 118 DACDVNEERFSNRISERLTDWPWLKTTMIAEHKADTNHRIVGGASILAKVVRDMEI---- 173
Query: 181 FEETAENMHRNFGSGYPGDHKHIIFGFPSL---------VRFSWGTC 218
E A ++ GSGYP D + + P L +R+SW T
Sbjct: 174 -ERIAVDVGAPVGSGYPAD-PNTVKALPYLIKEDGIHEEIRWSWATV 218
>gi|374328021|ref|YP_005086221.1| ribonuclease HII [Pyrobaculum sp. 1860]
gi|356643290|gb|AET33969.1| ribonuclease HII [Pyrobaculum sp. 1860]
Length = 195
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 74/216 (34%), Positives = 111/216 (51%), Gaps = 30/216 (13%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELF-EDLKVNDS 74
I G+DEAGRGPV+GP+V + + L L DSK L RE L+ E L+V++
Sbjct: 2 IAGVDEAGRGPVVGPLVIAVV---AGDGEALRRLGVRDSKKLTPGAREVLYREVLRVSEC 58
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEV-YLDTVG-DA 132
V + V ++P E+ + ++ +N E+ + + + I + +V Y+D+ DA
Sbjct: 59 VNYVV--VEPYEVD-RYASRGLLNALELDYTARL--------IELCPADVYYVDSPDVDA 107
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF 192
++Y + LS F + + VV+ P V+ ASIVAKV RDR L E + +F
Sbjct: 108 DRYGSGLS--FLTGRRVVALHKGEKVPQVAAASIVAKVVRDRLL------EVVKREVGDF 159
Query: 193 GSGYPGDHKHIIFGFPSL-----VRFSWGTCTSHFK 223
GSGYP D K + + L VR+SWGT FK
Sbjct: 160 GSGYPSDRKTVEWLRAGLVPRECVRWSWGTVGKLFK 195
>gi|219851606|ref|YP_002466038.1| ribonuclease HII [Methanosphaerula palustris E1-9c]
gi|219545865|gb|ACL16315.1| ribonuclease HII [Methanosphaerula palustris E1-9c]
Length = 219
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 76/226 (33%), Positives = 106/226 (46%), Gaps = 40/226 (17%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLK--- 70
P I G+DEAG+G VLGPMV + +A L DSK L KRE+L++ ++
Sbjct: 4 PLICGVDEAGKGAVLGPMVVAGV--ASRDVSAVAALGVRDSKQLTRLKREDLYDQIRSIC 61
Query: 71 -VNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 129
+V A DI RE SA M N I H + I +T L Y+D
Sbjct: 62 TTTVTVLSAADIDLARE-SATM---NMIVAR--GHAAVISTLTPTL--------AYVDAC 107
Query: 130 G-DAEKYQAKLSQRF---PSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETA 185
+A++Y+ ++ S + + +ADS YP+V+ ASI+AKVTRDR L + +E
Sbjct: 108 DVNADRYRETVTALLEPAASCQVIAEHRADSTYPIVAAASIIAKVTRDR-LVDALADECG 166
Query: 186 ENMHRNFGSGYPGDHKHIIF---------GFPSLVRFSWGTCTSHF 222
+ GSGYP D I + P+ R SW T T H
Sbjct: 167 Q-----IGSGYPSDRYTIAYLSDYIRRHHAPPACARKSWKT-TIHL 206
>gi|118431079|ref|NP_147280.2| ribonuclease HII [Aeropyrum pernix K1]
gi|150421651|sp|Q9YET5.2|RNH2_AERPE RecName: Full=Ribonuclease HII; Short=RNase HII
gi|116062405|dbj|BAA79461.2| ribonuclease HII [Aeropyrum pernix K1]
Length = 225
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 65/215 (30%), Positives = 107/215 (49%), Gaps = 27/215 (12%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
++G+DEAGRG ++G +V + L +L DSK L R EL+ ++
Sbjct: 3 IVVGVDEAGRGSLVGDLVVAGFAVEEARLGELQSLGVRDSKQLSPAARVELYREI---SG 59
Query: 75 VGW-AVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLN-IGILLTEVYLDTVGDA 132
VG+ V+ I P E+ + N+N + + +++R+++ +G+ + V +D GD
Sbjct: 60 VGFFTVEAIRPWEIDGE-------NINILVTKAVEEIVSRIVSYLGVHPSLVVVDKYGDV 112
Query: 133 EKYQAKLSQR-FPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRN 191
+ + L++ +V +KADS YPVVS ASIVAKV RD L + M+
Sbjct: 113 QGLRLALTRLGIEPRSILVEEKADSRYPVVSAASIVAKVVRDARL------QVLRRMYGV 166
Query: 192 FGSGYPGDHK-----HIIFG---FPSLVRFSWGTC 218
GSGYP D + +F P ++R++W T
Sbjct: 167 RGSGYPSDPETREWVREVFARGEAPRVIRYTWSTV 201
>gi|70606743|ref|YP_255613.1| ribonuclease HII [Sulfolobus acidocaldarius DSM 639]
gi|449066967|ref|YP_007434049.1| ribonuclease HII [Sulfolobus acidocaldarius N8]
gi|449069239|ref|YP_007436320.1| ribonuclease HII [Sulfolobus acidocaldarius Ron12/I]
gi|109896186|sp|Q4JA60.1|RNH2_SULAC RecName: Full=Ribonuclease HII; Short=RNase HII
gi|68567391|gb|AAY80320.1| ribonuclease HII [Sulfolobus acidocaldarius DSM 639]
gi|449035475|gb|AGE70901.1| ribonuclease HII [Sulfolobus acidocaldarius N8]
gi|449037747|gb|AGE73172.1| ribonuclease HII [Sulfolobus acidocaldarius Ron12/I]
Length = 212
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 69/216 (31%), Positives = 106/216 (49%), Gaps = 38/216 (17%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
++GIDEAGRG ++GPMV + ++ + L+ + DSK L +KRE LF V
Sbjct: 2 ILVGIDEAGRGSLIGPMVVAGVAIDSNFLKFLSEIGVKDSKKLTRKKREYLF---GVILE 58
Query: 75 VGWAVDIID--PRELSAKMLNKNKINLNEISHDSAIGLI--TRVLNIGILLTEVYLDTVG 130
+A+ ++ P E+ ++ NLNEI++ + I +I V N I V +D VG
Sbjct: 59 YSYAISLVKAYPEEIDSE-------NLNEITYRAMIQIIHSMSVYNPSI----VTVDKVG 107
Query: 131 DAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHR 190
+A + ++ S + V AD Y VS ASI+AKV RD + + +
Sbjct: 108 NASAVEREIININSSPR--VENNADVKYVEVSAASIIAKVVRDNII------NELKKTYG 159
Query: 191 NFGSGYPGDHKHI-----------IFGFPSLVRFSW 215
+FGSGYPGD K + + P ++R SW
Sbjct: 160 DFGSGYPGDKKTVEWIKDLYSRQPTYALP-IIRRSW 194
>gi|294495980|ref|YP_003542473.1| RNase HII [Methanohalophilus mahii DSM 5219]
gi|292666979|gb|ADE36828.1| RNase HII [Methanohalophilus mahii DSM 5219]
Length = 215
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 74/223 (33%), Positives = 108/223 (48%), Gaps = 35/223 (15%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDEAG+GPV+GPM + S L L ADSK L ++RE L ++
Sbjct: 3 IAGIDEAGKGPVIGPMCVAGVIMDESKINALKNLGVADSKKLSPKRRENLARQIR----- 57
Query: 76 GWAVDIIDPRELSAKMLN--KNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG-DA 132
D I +E+ A ++ +N +++N+I G + + N+ L Y+D +A
Sbjct: 58 -KYADGIFIQEIEACQIDELRNIMSMNDI---MIRGFSSVLENLKPDLA--YVDAADVNA 111
Query: 133 EKYQAKL-------SQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETA 185
E++ KL +R + + AD +YP+VS ASI+AKV RD + G I +TA
Sbjct: 112 ERFGKKLLAAFEKKHEREKKPEIISEHGADDIYPIVSAASIIAKVRRDELI-GNI--KTA 168
Query: 186 ENMHRNFGSGYPGDHKHIIF---------GFPSLVRFSWGTCT 219
++ +FGSGYP D K F P VR SW T
Sbjct: 169 --INEDFGSGYPSDPKTKKFLQEWMDKNGNLPDFVRHSWKTAA 209
>gi|389852952|ref|YP_006355186.1| ribonuclease HII [Pyrococcus sp. ST04]
gi|388250258|gb|AFK23111.1| Ribonuclease HII [Pyrococcus sp. ST04]
Length = 222
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 66/217 (30%), Positives = 100/217 (46%), Gaps = 32/217 (14%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+ GIDEAGRGP +GP+V + S +L + DSK L E+R +F ++ V+
Sbjct: 3 VGGIDEAGRGPAIGPLVIVAVVVDESKLSSLKNIGVKDSKQLTPEQRRRMFSEI-VSLLE 61
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGD--AE 133
+ V + P E+ + N++ + + + LN + EV D AE
Sbjct: 62 DYVVIKVPPSEIDNRSGTMNELEVEKFAE---------ALNSLKVKPEVIYADAADVKAE 112
Query: 134 KYQAKLSQRFP-SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF 192
++ ++ R + + KAD+ Y VVS ASI+AKV RD + E + + +F
Sbjct: 113 RFAREIGARLSYNASIIAEHKADAKYEVVSAASILAKVIRDEEI------EKLKEEYGDF 166
Query: 193 GSGYPGD-----------HKHIIFGFPSLVRFSWGTC 218
GSGYP D KH FP +VR SW T
Sbjct: 167 GSGYPSDPRTKKWLEEWFKKHK--SFPPIVRRSWETV 201
>gi|435851233|ref|YP_007312819.1| ribonuclease H, mammalian HI/archaeal HII subfamily
[Methanomethylovorans hollandica DSM 15978]
gi|433661863|gb|AGB49289.1| ribonuclease H, mammalian HI/archaeal HII subfamily
[Methanomethylovorans hollandica DSM 15978]
Length = 216
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 70/234 (29%), Positives = 107/234 (45%), Gaps = 46/234 (19%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDEAG+GPV+GPM G + +L L ADSK L +KRE L +
Sbjct: 3 IAGIDEAGKGPVIGPMCIGGVLADKGKLDSLKNLGVADSKKLTPKKREHLAHQINKYAHK 62
Query: 76 GWAVDIIDPRELSA--KMLNKNKINLNEISHDSAIGLITRVLNIGILLTEV-----YLDT 128
+ + + P ++ K+++ N+I VL +L E+ Y+D
Sbjct: 63 VYVFE-VSPSQIDELRKVMSMNQI---------------MVLGFSRVLEELQPDMAYVDA 106
Query: 129 VG-DAEKY----QAKLSQRFP----SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW 179
+A ++ +A+ ++++P + V +AD+ YP+VS ASIVAKV RD
Sbjct: 107 ADVNAARFGTNLKAQYAKKYPEKSEELTVVSEHQADATYPIVSAASIVAKVRRDE----- 161
Query: 180 IFEETAENMHRNFGSGYPGDHKHIIF---------GFPSLVRFSWGTCTSHFKD 224
+ +E + + GSGYP D K F P VR SW T + K+
Sbjct: 162 LVKELINRIGIDLGSGYPSDPKTKRFLEDWSREHGTLPDFVRHSWKTALNVLKE 215
>gi|240103148|ref|YP_002959457.1| ribonuclease HII [Thermococcus gammatolerans EJ3]
gi|239910702|gb|ACS33593.1| Ribonuclease HII (rnhB) [Thermococcus gammatolerans EJ3]
Length = 226
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 69/217 (31%), Positives = 103/217 (47%), Gaps = 32/217 (14%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL--KVND 73
I GIDEAGRGPV+GPMV + ++L L DSK L +RE LF+++ +++D
Sbjct: 5 IAGIDEAGRGPVIGPMVIAAVVVDEEKLKSLEELGVRDSKKLTPGRRERLFDEIIAQLDD 64
Query: 74 SVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLN-IGILLTEVYLDTVGDA 132
V II EL + ++ ++ LNE ++ ++ LN + + VY+D
Sbjct: 65 YV-----II---ELWPEEIDSREVTLNEFEVEN----FSKALNSLKVKPDVVYIDAADVK 112
Query: 133 EKYQAKLSQRFPSIK--FVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHR 190
E + + K V +AD + VS ASI+AKV RDR + E + +
Sbjct: 113 EGRFGEAIGKLLKFKAEIVAEHRADDKFVPVSAASILAKVVRDRAI------EKLKEEYG 166
Query: 191 NFGSGYPGDHKHIIF---------GFPSLVRFSWGTC 218
GSGYP D + F FP +VR +W T
Sbjct: 167 EIGSGYPSDPRTRDFLERYYREHGDFPPIVRRTWKTV 203
>gi|397780747|ref|YP_006545220.1| ribonuclease HII [Methanoculleus bourgensis MS2]
gi|396939249|emb|CCJ36504.1| ribonuclease HII [Methanoculleus bourgensis MS2]
Length = 216
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 70/222 (31%), Positives = 110/222 (49%), Gaps = 41/222 (18%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I G+DEAG+G VLGPMV + C LA L DSK L+ ++RE ++E L +
Sbjct: 9 ICGVDEAGKGSVLGPMVVAAV--GCREAGDLAPLPIRDSKALRPKQREAIYEILLRD--- 63
Query: 76 GWAVDIIDPRELSAKMLN--KNKINLNEIS---HDSAIGLITRVLNIGILLTEVYLDTVG 130
+A+ I+ + A ++ ++++++NE H A+ +G+ Y+D
Sbjct: 64 -FAISIV---TIDAAGIDEARSRMSMNECVAELHAEAL--------MGLRPESAYVDACD 111
Query: 131 -DAEKYQAKLSQR--FPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAEN 187
+AE+Y ++ FP + +AD+ Y +V AS+VAKVTRDR ++ +
Sbjct: 112 VNAERYGRTVTDYLDFPC-DIISEHRADARYKIVGAASVVAKVTRDRAIKDL------DE 164
Query: 188 MHRNFGSGYPGDHKHIIF--GF-------PSLVRFSWGTCTS 220
+ N GSGYP D I F G+ P R SW T T+
Sbjct: 165 QYGNIGSGYPSDPVTIEFLRGYVRDYGNPPPCARRSWKTVTN 206
>gi|300710295|ref|YP_003736109.1| ribonuclease HII [Halalkalicoccus jeotgali B3]
gi|448294621|ref|ZP_21484700.1| ribonuclease HII [Halalkalicoccus jeotgali B3]
gi|299123978|gb|ADJ14317.1| ribonuclease HII [Halalkalicoccus jeotgali B3]
gi|445586298|gb|ELY40580.1| ribonuclease HII [Halalkalicoccus jeotgali B3]
Length = 214
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 62/213 (29%), Positives = 90/213 (42%), Gaps = 26/213 (12%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
C GIDEAG+GPVLGPM+ C+ C +++ DSK L KR L E L +++
Sbjct: 2 CRFGIDEAGKGPVLGPMIAACV---CVPDESVLPEGIDDSKRLTPAKRGRLSEALLGDEA 58
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
+G + + P + + N + + +H A + GI DA +
Sbjct: 59 IGIGIAAVSPDRIDTPETDMNSLTVA--AHAEAASEVVEPGMTGICDAGDV-----DAGR 111
Query: 135 YQAKLSQRFP-SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG 193
+ ++ QR P + AD + +V AS+VAKV RDR + E + G
Sbjct: 112 FVHRVGQRLPEGVSLSGEHGADEHHAIVGAASVVAKVERDRRVAAL------EAAYGEVG 165
Query: 194 SGYPGDHKHIIF---------GFPSLVRFSWGT 217
SGYP D F P R SW T
Sbjct: 166 SGYPSDPTTREFLAEYVAENGELPECARASWKT 198
>gi|395646404|ref|ZP_10434264.1| ribonuclease HII [Methanofollis liminatans DSM 4140]
gi|395443144|gb|EJG07901.1| ribonuclease HII [Methanofollis liminatans DSM 4140]
Length = 212
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 105/223 (47%), Gaps = 37/223 (16%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATL--NFADSKTLKEEKREELFEDLKVND 73
I G+DEAG+G VLGPMV G + C + + L DSK L ++R L+++ +
Sbjct: 2 ICGVDEAGKGAVLGPMVVGGVGC-----EEMGDLPPGVKDSKALTPKRRATLYDE--ITG 54
Query: 74 SVGWAVDIIDPRELSAKMLN--KNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG- 130
S W V E+SA ++ + ++++N I + G+I + Y+D
Sbjct: 55 SFPWTVI-----EVSAAEIDHLREEMSMNTIVARAHAGVIA-----ALAPQTAYVDACDV 104
Query: 131 DAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHR 190
+ E+Y A ++ + AD+L+PVVS ASIVAKV+RDR I E +
Sbjct: 105 NEERYAATVTALGSPCPVIARHHADALFPVVSAASIVAKVSRDRR----IIE--LQEAFG 158
Query: 191 NFGSGYPGDHKHIIF--------GFPSL-VRFSWGTCTSHFKD 224
GSGYP D I + G P + R SW T KD
Sbjct: 159 AIGSGYPSDTVTIAYLREQIRADGVPPVFARRSWKTVEEMMKD 201
>gi|15899137|ref|NP_343742.1| ribonuclease HII [Sulfolobus solfataricus P2]
gi|284173748|ref|ZP_06387717.1| ribonuclease HII [Sulfolobus solfataricus 98/2]
gi|384432732|ref|YP_005642090.1| ribonuclease HII [Sulfolobus solfataricus 98/2]
gi|74539626|sp|Q97W56.1|RNH2_SULSO RecName: Full=Ribonuclease HII; Short=RNase HII
gi|13815686|gb|AAK42532.1| Ribonuclease HII (rnhB) [Sulfolobus solfataricus P2]
gi|261600886|gb|ACX90489.1| ribonuclease HII [Sulfolobus solfataricus 98/2]
Length = 212
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 67/213 (31%), Positives = 105/213 (49%), Gaps = 27/213 (12%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVG 76
+GIDEAGRG ++GPM+ + + + L + DSK L E+RE+LF D+ N
Sbjct: 3 VGIDEAGRGALIGPMIVAGVVISDTKLKFLKGIGVKDSKQLTRERREKLF-DIVANTVEA 61
Query: 77 WAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQ 136
+ V + P E+ + NLN++++D+ +I + + + V D VGD EK
Sbjct: 62 FTVVKVFPYEI-------DNYNLNDLTYDAVSKIILSLSSFNPEIVTV--DKVGD-EKPV 111
Query: 137 AKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGY 196
+L + K V KAD L+ S ASI+AKV RD + + + ++ +FGSGY
Sbjct: 112 IELINKL-GYKSNVVHKADVLFVEASAASIIAKVIRDNYI------DELKQVYGDFGSGY 164
Query: 197 PGDHKHIIF---------GFPSLVRFSWGTCTS 220
P D + I + P ++R SW S
Sbjct: 165 PADPRTIKWLKSFYEKNPNPPPIIRRSWKILRS 197
>gi|11498229|ref|NP_069455.1| ribonuclease HII [Archaeoglobus fulgidus DSM 4304]
gi|7388077|sp|O29634.1|RNH2_ARCFU RecName: Full=Ribonuclease HII; Short=RNase HII
gi|2650000|gb|AAB90620.1| ribonuclease HII (rnhB) [Archaeoglobus fulgidus DSM 4304]
Length = 205
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 68/212 (32%), Positives = 102/212 (48%), Gaps = 28/212 (13%)
Query: 18 GIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGW 77
GIDEAG+G V+GP+V + CS + L L DSK L + +REEL E+++
Sbjct: 4 GIDEAGKGCVIGPLVVAGV--ACSDEDRLRKLGVKDSKKLSQGRREELAEEIR--KICRT 59
Query: 78 AVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEV-YLDTVGDAEKYQ 136
V + P L +M K +NEI + +I R L E+ Y+D+ +
Sbjct: 60 EVLKVSPENLDERMAAKT---INEILKECYAEIILR------LKPEIAYVDSPDVIPERL 110
Query: 137 AKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGY 196
++ + ++ V KAD YP+V+ ASI+AKV R+R + E + +FGSGY
Sbjct: 111 SRELEEITGLRVVAEHKADEKYPLVAAASIIAKVEREREI------ERLKEKFGDFGSGY 164
Query: 197 PGDHKH-------IIFG-FPSLVRFSWGTCTS 220
D + I G PS VR W T ++
Sbjct: 165 ASDPRTREVLKEWIASGRIPSCVRMRWKTVSN 196
>gi|14278646|pdb|1I39|A Chain A, Rnase Hii From Archaeoglobus Fulgidus
gi|14278647|pdb|1I3A|A Chain A, Rnase Hii From Archaeoglobus Fulgidus With Cobalt
Hexammine Chloride
Length = 225
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 68/212 (32%), Positives = 102/212 (48%), Gaps = 28/212 (13%)
Query: 18 GIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGW 77
GIDEAG+G V+GP+V + C S + L L DSK L + +REEL E+++
Sbjct: 24 GIDEAGKGCVIGPLVVAGVAC--SDEDRLRKLGVKDSKKLSQGRREELAEEIR--KICRT 79
Query: 78 AVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEV-YLDTVGDAEKYQ 136
V + P L +M K +NEI + +I R L E+ Y+D+ +
Sbjct: 80 EVLKVSPENLDERMAAKT---INEILKECYAEIILR------LKPEIAYVDSPDVIPERL 130
Query: 137 AKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGY 196
++ + ++ V KAD YP+V+ ASI+AKV R+R + E + +FGSGY
Sbjct: 131 SRELEEITGLRVVAEHKADEKYPLVAAASIIAKVEREREI------ERLKEKFGDFGSGY 184
Query: 197 PGDHKH-------IIFG-FPSLVRFSWGTCTS 220
D + I G PS VR W T ++
Sbjct: 185 ASDPRTREVLKEWIASGRIPSCVRMRWKTVSN 216
>gi|321159924|pdb|3P83|D Chain D, Structure Of The Pcna:rnase Hii Complex From Archaeoglobus
Fulgidus.
gi|321159925|pdb|3P83|E Chain E, Structure Of The Pcna:rnase Hii Complex From Archaeoglobus
Fulgidus.
gi|321159926|pdb|3P83|F Chain F, Structure Of The Pcna:rnase Hii Complex From Archaeoglobus
Fulgidus
Length = 217
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 69/222 (31%), Positives = 105/222 (47%), Gaps = 28/222 (12%)
Query: 8 PKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFE 67
P++ GIDEAG+G V+GP+V + C S + L L DSK L + +REEL E
Sbjct: 6 PEFPGRLMKAGIDEAGKGCVIGPLVVAGVAC--SDEDRLRKLGVKDSKKLSQGRREELAE 63
Query: 68 DLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEV-YL 126
+++ V + P L +M K +NEI + +I R L E+ Y+
Sbjct: 64 EIR--KICRTEVLKVSPENLDERMAAKT---INEILKECYAEIILR------LKPEIAYV 112
Query: 127 DTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAE 186
D+ + ++ + ++ V KAD YP+V+ ASI+AKV R+R + E +
Sbjct: 113 DSPDVIPERLSRELEEITGLRVVAEHKADEKYPLVAAASIIAKVEREREI------ERLK 166
Query: 187 NMHRNFGSGYPGDHKH-------IIFG-FPSLVRFSWGTCTS 220
+FGSGY D + I G PS VR W T ++
Sbjct: 167 EKFGDFGSGYASDPRTREVLKEWIASGRIPSCVRMRWKTVSN 208
>gi|229583211|ref|YP_002841610.1| ribonuclease HII [Sulfolobus islandicus Y.N.15.51]
gi|228013927|gb|ACP49688.1| ribonuclease HII [Sulfolobus islandicus Y.N.15.51]
Length = 212
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 68/214 (31%), Positives = 108/214 (50%), Gaps = 29/214 (13%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVG 76
+GIDEAGRG ++GPM+ + S + L + DSK L E+RE+LF+ + +
Sbjct: 3 IGIDEAGRGALIGPMIVAGVAISDSKLKFLKGIGVKDSKQLTRERREKLFDIIAITVDAF 62
Query: 77 WAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTE-VYLDTVGDAEKY 135
V + P E+ + NLN++++D+ +I L++ + E V +D VG+ EK
Sbjct: 63 TVVKVF-PYEI-------DNYNLNDLTYDAVSKII---LSLSVFNPEIVTVDKVGE-EKP 110
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 195
+L ++ K V KAD L+ S ASI+AKV RD + + + ++ +FGSG
Sbjct: 111 VIELIRKL-GYKSNVVHKADVLFVEASAASIIAKVIRDNYI------DELKKVYGDFGSG 163
Query: 196 YPGDHKHIIF---------GFPSLVRFSWGTCTS 220
YP D + I + P +VR SW S
Sbjct: 164 YPADPRTIKWLKSFYEKNPNPPPIVRRSWKILRS 197
>gi|424811467|ref|ZP_18236718.1| ribonuclease H, archaeal HII subfamily [Candidatus Nanosalinarum
sp. J07AB56]
gi|339757193|gb|EGQ40774.1| ribonuclease H, archaeal HII subfamily [Candidatus Nanosalinarum
sp. J07AB56]
Length = 217
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 70/217 (32%), Positives = 100/217 (46%), Gaps = 32/217 (14%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I+GIDEAGRGPV+G M G S L L DSK L ++ R+ L ++ D+
Sbjct: 4 ILGIDEAGRGPVIGSMFIGGFLVEESELGRLEELGLKDSKKLSDQARDRLRTEV---DAY 60
Query: 76 GWAVDIIDPRELSAKMLNK--NKINLNEISHDSAIGLITRVL--NIGILLTEVYLDTVGD 131
G + RE+ A +L+ ++ +N++ + LI+R + I L E D
Sbjct: 61 GETL----LREVEAPVLDDKMEEVTINDVELEEFAALISRAQPEKVVIDLPE------HD 110
Query: 132 AEKYQAKLSQRFPSIKFVVSKK-ADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHR 190
A+ Y+ KL R V ++ AD+ YP+VS AS+VAK R+R + E E
Sbjct: 111 ADVYEEKLLSRLDFDPEVTAEHGADAAYPIVSAASVVAKSARERHV-----ERLHEKYGV 165
Query: 191 NFGSGYPGDHKHIIF---------GFPSLVRFSWGTC 218
+F SGYP D I F P R W T
Sbjct: 166 DFDSGYPHDEATIEFLKGYVRSTGDLPDEARRQWSTS 202
>gi|429216288|ref|YP_007174278.1| ribonuclease H, mammalian HI/archaeal HII subfamily [Caldisphaera
lagunensis DSM 15908]
gi|429132817|gb|AFZ69829.1| ribonuclease H, mammalian HI/archaeal HII subfamily [Caldisphaera
lagunensis DSM 15908]
Length = 228
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 67/217 (30%), Positives = 104/217 (47%), Gaps = 32/217 (14%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I+GIDEAGRG ++G ++ G + L + DSK L +RE L+E L + +
Sbjct: 8 IIGIDEAGRGSIIGELMVGSYAIRENDIDFLKEIGVKDSKMLTPNQRENLYEIL-IRKGL 66
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVY------LDTV 129
++V I P ++ ++ N+N + +AI +LN+ + ++ +D
Sbjct: 67 -FSVIPIKPYDI-------DRNNINTLEEKAAI---QNILNLKRQIGNIFEIKSIIIDKF 115
Query: 130 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH 189
G + +KL Q +V KAD YPVVS ASI+AKV RDR + E ++
Sbjct: 116 GYLKLMPSKLKQLGFKGDLIVEPKADVNYPVVSAASIIAKVIRDRRI------EILRKLY 169
Query: 190 RNFGSGYPGDHKHIIFGF--------PSLVRFSWGTC 218
GSGYP D + I + F P +R+SW T
Sbjct: 170 GVKGSGYPSDPETIDYVFSELKKGYKPLFIRYSWETL 206
>gi|288561094|ref|YP_003424580.1| ribonuclease HII RnhB [Methanobrevibacter ruminantium M1]
gi|288543804|gb|ADC47688.1| ribonuclease HII RnhB [Methanobrevibacter ruminantium M1]
Length = 219
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 67/216 (31%), Positives = 101/216 (46%), Gaps = 27/216 (12%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL-KVNDSV 75
+G+DEAGRGPVLGPMV + P ++ + + DSK + ++R L+ L ++ D
Sbjct: 4 LGLDEAGRGPVLGPMVVAGIVIPEKKEKIIERMGVKDSKRITPKRRAVLYRKLTRMFDY- 62
Query: 76 GWAVDIIDPRELSAK---MLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
+ E+SAK +L +NLN+I + + +I ++ I+ +D++
Sbjct: 63 -------ETVEISAKDIDLLRAKGVNLNQIEKLAMMRIIAKLKADTII-----IDSLDIK 110
Query: 133 EKYQAKLSQRF--PSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHR 190
E + Q F K + KAD Y VV ASI+AK RD + E ++
Sbjct: 111 EGRLEEEMQNFVGEGSKVIAEHKADDKYIVVGAASIIAKTKRDEIINQINKEYIRSTGNK 170
Query: 191 N-FGSGYPGDHKHIIF-------GFPSLVRFSWGTC 218
+ GSGYP D K F P VR SWGT
Sbjct: 171 DGIGSGYPSDPKTKNFLKNYKYDEMPDFVRRSWGTV 206
>gi|330835291|ref|YP_004410019.1| ribonuclease HII [Metallosphaera cuprina Ar-4]
gi|329567430|gb|AEB95535.1| ribonuclease HII [Metallosphaera cuprina Ar-4]
Length = 208
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 71/216 (32%), Positives = 106/216 (49%), Gaps = 31/216 (14%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVG 76
+GIDEAGRG ++GPM+ + ++ L L DSK L ++REELF + + S G
Sbjct: 3 LGIDEAGRGCLIGPMIVAGIVLDEKGREELKELGVKDSKRLTRKRREELFNAI-IERSKG 61
Query: 77 WAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRV--LNIGILLTEVYLDTVGDAEK 134
AV +P E+ + NLN +++ +I+ + LN I V +D VG E
Sbjct: 62 IAVAKAEPLEIDSN-------NLNALTYRKVSEIISSLSWLNPKI----VTVDKVGK-ET 109
Query: 135 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGS 194
+L +R + VV KAD L+ S ASI+AKV RD + E + + +FGS
Sbjct: 110 EVIELIERLGFVANVVH-KADELFIEASSASIIAKVIRDNII------ERLKLKYGDFGS 162
Query: 195 GYPGDHKHIIF---------GFPSLVRFSWGTCTSH 221
GYP D K I + P+++R SW +
Sbjct: 163 GYPSDPKTIRWVKDLVSKGEEPPNIIRKSWKLLQKY 198
>gi|227826588|ref|YP_002828367.1| ribonuclease HII [Sulfolobus islandicus M.14.25]
gi|227829230|ref|YP_002831009.1| ribonuclease HII [Sulfolobus islandicus L.S.2.15]
gi|229577999|ref|YP_002836397.1| ribonuclease HII [Sulfolobus islandicus Y.G.57.14]
gi|229583752|ref|YP_002842253.1| ribonuclease HII [Sulfolobus islandicus M.16.27]
gi|238618674|ref|YP_002913499.1| ribonuclease HII [Sulfolobus islandicus M.16.4]
gi|284996585|ref|YP_003418352.1| hypothetical protein [Sulfolobus islandicus L.D.8.5]
gi|385772204|ref|YP_005644770.1| ribonuclease HII [Sulfolobus islandicus HVE10/4]
gi|385774919|ref|YP_005647487.1| ribonuclease HII [Sulfolobus islandicus REY15A]
gi|227455677|gb|ACP34364.1| ribonuclease HII [Sulfolobus islandicus L.S.2.15]
gi|227458383|gb|ACP37069.1| ribonuclease HII [Sulfolobus islandicus M.14.25]
gi|228008713|gb|ACP44475.1| ribonuclease HII [Sulfolobus islandicus Y.G.57.14]
gi|228018801|gb|ACP54208.1| ribonuclease HII [Sulfolobus islandicus M.16.27]
gi|238379743|gb|ACR40831.1| ribonuclease HII [Sulfolobus islandicus M.16.4]
gi|284444480|gb|ADB85982.1| hypothetical protein LD85_0182 [Sulfolobus islandicus L.D.8.5]
gi|323473667|gb|ADX84273.1| ribonuclease HII [Sulfolobus islandicus REY15A]
gi|323476318|gb|ADX81556.1| ribonuclease HII [Sulfolobus islandicus HVE10/4]
Length = 212
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 69/214 (32%), Positives = 109/214 (50%), Gaps = 29/214 (13%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVG 76
+GIDEAGRG ++GPM+ + S + L + DSK L E+RE+LF D+ +
Sbjct: 3 IGIDEAGRGALIGPMIVAGVAISDSKLKFLKGIGVKDSKQLTRERREKLF-DIIASTVDA 61
Query: 77 WAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTE-VYLDTVGDAEKY 135
+ V + P E+ + NLN++++D+ +I L++ + E V +D VG+ EK
Sbjct: 62 FTVVKVFPYEI-------DNYNLNDLTYDAVSKII---LSLSVFNPEIVTVDKVGE-EKP 110
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 195
+L ++ K V KAD L+ S ASI+AKV RD + + + ++ +FGSG
Sbjct: 111 VIELIRKL-GYKSNVVHKADVLFVEASAASIIAKVIRDNYI------DELKKVYGDFGSG 163
Query: 196 YPGDHKHIIF---------GFPSLVRFSWGTCTS 220
YP D + I + P +VR SW S
Sbjct: 164 YPADPRTIKWLKSFYEKNPNPPPIVRRSWKILRS 197
>gi|212223919|ref|YP_002307155.1| ribonuclease HII [Thermococcus onnurineus NA1]
gi|226736826|sp|B6YVT5.1|RNH2_THEON RecName: Full=Ribonuclease HII; Short=RNase HII
gi|212008876|gb|ACJ16258.1| ribonuclease HII [Thermococcus onnurineus NA1]
Length = 227
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 70/217 (32%), Positives = 102/217 (47%), Gaps = 32/217 (14%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+ GIDEAGRGPVLGPMV + L L DSK L ++RE LF D +
Sbjct: 3 LAGIDEAGRGPVLGPMVIAAVVVDEGNVPKLEELGVKDSKKLTPKRRERLF------DEI 56
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDT--VGDA- 132
+D EL + ++ + LNE ++ + + ++ + VY+D V +A
Sbjct: 57 VQLLDDYVILELWPEEIDSREGTLNEFEVENFVKALN---SLKVKPDVVYIDAADVKEAR 113
Query: 133 --EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHR 190
E+ +AKL F + + KAD + VS ASI+AKV RDR + E ++ +
Sbjct: 114 FGEEIKAKLD--FEA-DIIAEHKADDKFVPVSAASILAKVARDRAI------EKLKDQYG 164
Query: 191 NFGSGYPGDHKHIIF---------GFPSLVRFSWGTC 218
GSGYP D + F FP +VR +W T
Sbjct: 165 EIGSGYPSDPRTRTFLEEYYRKHGEFPPIVRRTWKTL 201
>gi|408381629|ref|ZP_11179177.1| ribonuclease HII [Methanobacterium formicicum DSM 3637]
gi|407815560|gb|EKF86130.1| ribonuclease HII [Methanobacterium formicicum DSM 3637]
Length = 206
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 73/226 (32%), Positives = 99/226 (43%), Gaps = 40/226 (17%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKR-------EELFED 68
I+GIDEAGRG VLGP+V + + L L DSK + ++R E + E
Sbjct: 3 ILGIDEAGRGSVLGPLVVCGVAVEEDRVKYLERLGLKDSKKISPKRRLSLSRKIERIAEC 62
Query: 69 LKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDT 128
VN + A+DI L +NLNEI AI I N + ++D+
Sbjct: 63 HTVNIT---ALDI--------DTLRSRDVNLNEIEK-IAINQIIGNSN----PSTCFIDS 106
Query: 129 VG-DAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAEN 187
+ E+ ++L + V KAD YP+VS ASIVAKV RDR + +
Sbjct: 107 MDVKPERLASELESMHSQLNVVSEHKADDHYPIVSAASIVAKVERDRAI------QNIRK 160
Query: 188 MHRNFGSGYPGDHKHIIF----------GFPSLVRFSWGTCTSHFK 223
+ + GSGYP D K I F P +R SW T K
Sbjct: 161 TYPDVGSGYPSDPKTIEFLKTLSQETPNELPEFIRRSWATVERILK 206
>gi|15920736|ref|NP_376405.1| ribonuclease HII [Sulfolobus tokodaii str. 7]
gi|74574695|sp|Q974Z3.1|RNH2_SULTO RecName: Full=Ribonuclease HII; Short=RNase HII
gi|342306230|dbj|BAK54319.1| ribonuclease HII [Sulfolobus tokodaii str. 7]
Length = 208
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 105/210 (50%), Gaps = 27/210 (12%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
++GIDEAGRG ++GPM+ + + L + DSK L +RE+LF D+ + S
Sbjct: 2 IVVGIDEAGRGSLIGPMIVAGVAIKNDRLKFLKNIGVKDSKQLTRNRREKLF-DIICSYS 60
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
G+ + + P E+ ++ NLNE+++ + I +I ++ + + +D VG+ +
Sbjct: 61 EGFTIVKVSPEEIDSE-------NLNELTYKAMIKIIYSLVEFKPI--RISIDKVGNTKV 111
Query: 135 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGS 194
+ ++ + V + AD + S ASI+AKV RD + +T ++ + +FGS
Sbjct: 112 VEQEIIKLGMEPNIVTN--ADVYFVEASAASIIAKVIRDNII------DTLKSKYGDFGS 163
Query: 195 GYPGDHKHI---------IFGFPSLVRFSW 215
GYP D K + P ++R SW
Sbjct: 164 GYPSDPKTVNWVKNVYKEYLTPPPIIRRSW 193
>gi|374629635|ref|ZP_09702020.1| RNase HII [Methanoplanus limicola DSM 2279]
gi|373907748|gb|EHQ35852.1| RNase HII [Methanoplanus limicola DSM 2279]
Length = 212
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 78/221 (35%), Positives = 112/221 (50%), Gaps = 39/221 (17%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL----KV 71
I GIDEAG+G V+GPMV G + FADSK L ++RE L+ +L K
Sbjct: 2 ICGIDEAGKGSVIGPMVIGGI--SGVKLSDFEERGFADSKKLSPKRRESLYGELTREFKT 59
Query: 72 NDSVGWAVDIIDPRELSAKMLNKNKINLNEI-SHDSAIGLITRVLNIGILLTEVYLDTVG 130
+ V A DI RE +++N+I +H A + + L+ G Y+D
Sbjct: 60 SVIVISAPDIDQKRET---------MSMNDIVAHGHA--SVIKQLSAGT----AYVDACD 104
Query: 131 DAE-KYQAKLSQRFPSIKFVVSK-KADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENM 188
E +Y K++ + V SK KAD++YPVV+ ASIVAKVTRDR ++ E +E +
Sbjct: 105 VNEARYGNKIADLLDNKVTVYSKHKADNIYPVVAAASIVAKVTRDRLIK-----ELSE-V 158
Query: 189 HRNFGSGYPGDHKHIIF--GF-------PSLVRFSWGTCTS 220
+ GSGYP D I + G+ P + R SW T ++
Sbjct: 159 YGTIGSGYPSDPVTISYLEGYIRENKEAPDIARKSWKTVSN 199
>gi|401406283|ref|XP_003882591.1| Ribonuclease, related [Neospora caninum Liverpool]
gi|325117006|emb|CBZ52559.1| Ribonuclease, related [Neospora caninum Liverpool]
Length = 297
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/103 (44%), Positives = 59/103 (57%), Gaps = 26/103 (25%)
Query: 77 WAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQ 136
W++ I P E+SAKML K K +LNEISH++AI LI R + G+ + E
Sbjct: 34 WSIHAIRPEEISAKMLRKKKHSLNEISHETAISLILRTVQSGVNVAE------------- 80
Query: 137 AKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW 179
V++KADSLYPVVS ASI+AKV+RDR L W
Sbjct: 81 -------------VAEKADSLYPVVSAASILAKVSRDRMLVQW 110
Score = 39.3 bits (90), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 48/108 (44%), Gaps = 17/108 (15%)
Query: 191 NFGSGYPGDHKHI---------IFGFPSLVRFSWGTCTSHFKDIVEVLWESDEMDEDVSS 241
FGSGYPGD + + +FGF VRFSW T + I E E E+V
Sbjct: 195 TFGSGYPGDAETVAFLNKNCDPVFGFDGFVRFSWSTA----RLIFEKRGVPVEWYEEVEE 250
Query: 242 RRSGKRQLKLSDI-GFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 288
+G + K S I F ++KR E + G R F KL+ L+
Sbjct: 251 EAAGASKAKQSRITNFFAAKR---EATAGGIDRAPFFVKSKLQLLSEL 295
>gi|341581295|ref|YP_004761787.1| ribonuclease HII [Thermococcus sp. 4557]
gi|340808953|gb|AEK72110.1| ribonuclease HII [Thermococcus sp. 4557]
Length = 231
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 96/214 (44%), Gaps = 26/214 (12%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+ GIDEAGRGPV+GPM + L L DSK L +RE LF D +
Sbjct: 3 LAGIDEAGRGPVIGPMAIAAVVVDERNVPKLEELGVKDSKKLTPRRRERLF------DEI 56
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAE-K 134
+D EL + ++ + LNE ++ + + ++ + +Y+D E +
Sbjct: 57 ISLLDDYVVLELWPEEIDSREGTLNEFEVENFVKALN---SLKVKPDVIYIDAADVKEAR 113
Query: 135 YQAKLSQRFP-SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG 193
+ + +R + + KAD + VS ASI+AKVTRDR + E + + G
Sbjct: 114 FGEDIGKRLDFKAEIIAEHKADDKFVPVSAASIIAKVTRDRAI------EKLKEKYGEIG 167
Query: 194 SGYPGDHKHIIF---------GFPSLVRFSWGTC 218
SGYP D + F FP +VR SW T
Sbjct: 168 SGYPSDPRTRAFLENYYREHGEFPPIVRRSWKTL 201
>gi|298674468|ref|YP_003726218.1| ribonuclease HII [Methanohalobium evestigatum Z-7303]
gi|298287456|gb|ADI73422.1| ribonuclease HII [Methanohalobium evestigatum Z-7303]
Length = 218
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 69/223 (30%), Positives = 102/223 (45%), Gaps = 36/223 (16%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+ GIDEAG+GPV+G M + + +L L DSK + KREEL +K
Sbjct: 3 VAGIDEAGKGPVIGSMCIAGVVVDEAKINSLKNLGVTDSKKISPRKREELAHKIK----- 57
Query: 76 GWAVDIIDPRELSAKMLN--KNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG-DA 132
VD E++ ++ +N +++N+I +G V N+ L VY+D+
Sbjct: 58 -KYVDNYFIFEITPSQIDELRNVMSMNDI---MVLGFSRVVENLNPEL--VYVDSADVKP 111
Query: 133 EKYQAKLSQRFP--------SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEET 184
E++ K+ + +IK + +AD +Y VVS ASI+AKV RD +
Sbjct: 112 ERFAEKIRSEYSKSNKTASENIKIISEHEADVVYSVVSAASIIAKVRRDE-----LVNNL 166
Query: 185 AENMHRNFGSGYPGDHKHIIF---------GFPSLVRFSWGTC 218
E +FGSGYP D K F P +VR SW T
Sbjct: 167 KEEFGVDFGSGYPSDPKTKQFLLDWVKRYGSLPDIVRHSWKTA 209
>gi|330508333|ref|YP_004384761.1| ribonuclease HII [Methanosaeta concilii GP6]
gi|328929141|gb|AEB68943.1| ribonuclease HII [Methanosaeta concilii GP6]
Length = 210
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 67/215 (31%), Positives = 99/215 (46%), Gaps = 27/215 (12%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+MG DEAG+GPV+G M L LA L DSK L KRE L + +
Sbjct: 3 LMGADEAGKGPVIGSMFVAGLVIDEERFFDLAVLGVKDSKMLSPAKREALARKITTIATD 62
Query: 76 GWAVDIIDPRELSAKMLNKNKI--NLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAE 133
+ + E+ A+++++ ++ +N+I S ++ R+ +L ++ AE
Sbjct: 63 QYIL------EVRAEVIDELRLVMTMNDIMVRSFSQVVGRLHADRAILDAADVN----AE 112
Query: 134 KY-QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF 192
++ QA + S+ + KAD + VVS ASI+AKV RDR++R E MH
Sbjct: 113 RFAQAVRNHSKTSMDLIAEHKADQRHHVVSAASILAKVRRDRSMR-----ELENEMHCKI 167
Query: 193 GSGYPGDHKHIIF---------GFPSLVRFSWGTC 218
GSGYP D I F P R SW T
Sbjct: 168 GSGYPHDRDTIAFLSEWVRENKDLPPCARHSWTTA 202
>gi|146303444|ref|YP_001190760.1| ribonuclease HII [Metallosphaera sedula DSM 5348]
gi|145701694|gb|ABP94836.1| RNase HII [Metallosphaera sedula DSM 5348]
Length = 208
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 75/211 (35%), Positives = 103/211 (48%), Gaps = 33/211 (15%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVG 76
+GIDEAGRG ++GPMV + L DSK L +KREELF DL +++S G
Sbjct: 3 IGIDEAGRGCLIGPMVVVGVALNERSIVALKQSGVKDSKKLTRKKREELF-DLILSESEG 61
Query: 77 WAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRV--LNIGILLTEVYLDTVG-DAE 133
AV P E+ NLN +++ I +I + LN + V +D VG + E
Sbjct: 62 VAVAKALPEEIDNN-------NLNSLTYTKVIEIIDALSWLNPEV----VTVDKVGKEIE 110
Query: 134 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG 193
+A F K V KAD L+ S ASIVAKV RDR + E+ + +FG
Sbjct: 111 VIRAIEDLGF---KPNVVHKADELFVEASSASIVAKVIRDRLI------ESLKKEFGDFG 161
Query: 194 SGYPGDHKHIIFGF---------PSLVRFSW 215
SGYP D K + + P+++R SW
Sbjct: 162 SGYPSDRKTVQWVLDLVSRGEEPPNIIRRSW 192
>gi|302348278|ref|YP_003815916.1| ribonuclease HII [Acidilobus saccharovorans 345-15]
gi|302328690|gb|ADL18885.1| Ribonuclease HII [Acidilobus saccharovorans 345-15]
Length = 223
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 65/216 (30%), Positives = 104/216 (48%), Gaps = 31/216 (14%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL-KVNDS 74
I+G+DEAGRG ++G ++ C L + DSK L RE L+ + ++ +
Sbjct: 4 IIGVDEAGRGSLVGELMLACFATKEENLGLLKDMGVRDSKQLTPHSRETLYRSIVRLGEF 63
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIG----LITRVLNIGILLTEVYLDTVG 130
V V I P E+ ++ N+N + +A+ L++R+ L+ +Y+D G
Sbjct: 64 V---VVPIPPAEI-------DRENVNVLEERAALKGLKVLLSRLRPE--LVKAIYIDKFG 111
Query: 131 DAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHR 190
+ +L + + VV KAD+ Y VVS ASI+AKV RDR + E +M+
Sbjct: 112 ELRILPGELKRLGFRGRLVVEPKADANYVVVSAASIIAKVIRDRRI------EVLRSMYG 165
Query: 191 NFGSGYPGDHKHIIFGF--------PSLVRFSWGTC 218
GSGYP D + + P ++R+SWGT
Sbjct: 166 VEGSGYPSDPLTVSWVMKVLSSGARPPIIRYSWGTL 201
>gi|268324099|emb|CBH37687.1| ribonuclease HII [uncultured archaeon]
gi|268326416|emb|CBH40004.1| ribonuclease HII [uncultured archaeon]
Length = 210
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 75/220 (34%), Positives = 103/220 (46%), Gaps = 40/220 (18%)
Query: 17 MGIDEAGRGPVLGPM-VYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+G+DEAGRGPV+G M V G L L L DSK L +RE L + ++ V
Sbjct: 6 IGVDEAGRGPVIGSMFVAGVLNY-----DGLEELGVKDSKRLSASRREHLAKIIEDATEV 60
Query: 76 GWAVDIIDPRELSAKMLNKNK--INLNEISHDSAIGLITRVLNIGILLTEVYLDTVG-DA 132
E++A ++K + LN+I+ + L + V+N ++D
Sbjct: 61 HVV-------EMTASEIDKAREERTLNKIT----VELFSEVIN-HFQPARAFVDAADVKP 108
Query: 133 EKYQAKLS---QRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH 189
E++ A L +R ++ + KAD YPVVS ASIVAKV RDR++R E AE
Sbjct: 109 ERFAANLRSNYKRVGELEIISEWKADDHYPVVSAASIVAKVHRDRSIRVLEAEIGAE--- 165
Query: 190 RNFGSGYPGDHKHIIF-----------GFPSLVRFSWGTC 218
GSGYP D K I F P+ VR SW T
Sbjct: 166 --IGSGYPADPKTIQFLKGLLKGKELDNIPAYVRRSWKTV 203
>gi|126178454|ref|YP_001046419.1| ribonuclease HII [Methanoculleus marisnigri JR1]
gi|125861248|gb|ABN56437.1| RNase HII [Methanoculleus marisnigri JR1]
Length = 205
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 67/218 (30%), Positives = 103/218 (47%), Gaps = 39/218 (17%)
Query: 19 IDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGWA 78
+DEAG+G VLGPMV + C + LATL DSK L+ ++RE L+E L
Sbjct: 1 MDEAGKGSVLGPMVVAAV--GCREIEDLATLPIRDSKVLRPKQREALYEILF-------- 50
Query: 79 VDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLT----EVYLDTVG-DAE 133
R+ S ++ + +++ ++ L+ L++ Y+D +AE
Sbjct: 51 ------RDFSIAIVTIDAAGIDDARSRMSMNTCVAELHAEALMSLQPEYAYVDACDVNAE 104
Query: 134 KYQAKLSQ--RFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRN 191
+Y +++ +P + V AD+ + VV AS+VAKVTRDR +R E +
Sbjct: 105 RYGRTVAELLDYPC-EIVAEHHADARHKVVGAASVVAKVTRDRAIREL------EQQYGA 157
Query: 192 FGSGYPGDHKHIIF--GF-------PSLVRFSWGTCTS 220
GSGYP D I F G+ P+ R SW T T+
Sbjct: 158 IGSGYPSDPATIEFLRGYIRSHGSPPACARRSWKTVTN 195
>gi|156938224|ref|YP_001436020.1| RNase HII [Ignicoccus hospitalis KIN4/I]
gi|156567208|gb|ABU82613.1| RNase HII [Ignicoccus hospitalis KIN4/I]
Length = 215
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 62/207 (29%), Positives = 99/207 (47%), Gaps = 22/207 (10%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+ GIDEAGRGPV+G M + + L +L +SK L KR + + +
Sbjct: 6 VAGIDEAGRGPVIGSMFVALVAIEQDQLEKLVSLGLKESKMLTPNKRRYFY------NLI 59
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
++ +E+ A+ ++K NL+E++ + L+ LN + + V +D VG+ K
Sbjct: 60 MKTAKLVLIKEVKAEEIDKR--NLSELTIEVMKELLETALN-KVKIDVVCVDIVGNGAKQ 116
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 195
+ L + FP + +V KK D+ P + ASIVAK R+R + + +FGSG
Sbjct: 117 RRALGEVFPDV--IVMKKGDASCPAAAAASIVAKEARERHV------SQLRARYGDFGSG 168
Query: 196 YPGDHK-----HIIFGFPSLVRFSWGT 217
YP D K + P +VR W T
Sbjct: 169 YPSDPKTLRWLSVTRPLPPIVRKKWKT 195
>gi|448610387|ref|ZP_21661133.1| ribonuclease HII [Haloferax mucosum ATCC BAA-1512]
gi|445745011|gb|ELZ96481.1| ribonuclease HII [Haloferax mucosum ATCC BAA-1512]
Length = 215
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 66/217 (30%), Positives = 95/217 (43%), Gaps = 32/217 (14%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVG 76
+G+DEAG+GPVLGPMV + + +TL ADSK L +REEL E L+ D V
Sbjct: 3 IGVDEAGKGPVLGPMVAAAVR---AESETLPD-GIADSKRLSAARREELNETLRERDDVA 58
Query: 77 WAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITR---VLNIGILLTEVYLDTVGDAE 133
V ++P + + N++ + +A V + G + + V D
Sbjct: 59 VGVAFVEPATIDDPETDMNRLTVRAQVEAAAAVAADDDQLVCDAGDVSESRFGRRVRDG- 117
Query: 134 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG 193
L++ S+ +AD + +V ASIVAKV RDR + E + + G
Sbjct: 118 -----LAETGLSVDVHAQHRADDEHAIVGAASIVAKVERDRRV------EAIADEYGAVG 166
Query: 194 SGYPGDH-----------KHIIFGFPSLVRFSWGTCT 219
SGYP D +H I P R SW TC
Sbjct: 167 SGYPSDQTTRDFLREFVREHGI--LPDCARKSWATCA 201
>gi|325960150|ref|YP_004291616.1| ribonuclease Hii [Methanobacterium sp. AL-21]
gi|325331582|gb|ADZ10644.1| ribonuclease HII [Methanobacterium sp. AL-21]
Length = 204
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 71/214 (33%), Positives = 101/214 (47%), Gaps = 31/214 (14%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I+GIDEAGRG VLGP+V + + L L DSK + ++R L+ +K
Sbjct: 3 IVGIDEAGRGSVLGPLVVCGVSIEEERLKYLERLKLKDSKKVTPKRRIVLYRKIK----- 57
Query: 76 GWAVDIIDPRELSAK---MLNKNKINLNEISHDSAIGLITRVLNIGILLTEV-YLDTVG- 130
+ P +SA +L +NLNEI AI I IG ++ Y+D +
Sbjct: 58 --KIADCHPVHISAADIDLLRSKDVNLNEIEK-IAIKQI-----IGNCDPDISYIDCIDV 109
Query: 131 DAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHR 190
E++ ++ ++K V AD YP+VS ASIVAKV RD+ + + +E E
Sbjct: 110 KPERFTNEIENFQENLKVVAEHGADDTYPIVSAASIVAKVERDQEI-SRLKKEFGE---- 164
Query: 191 NFGSGYPGDHKHIIF-------GFPSLVRFSWGT 217
GSGYP D K + + P VR SW T
Sbjct: 165 -IGSGYPSDPKTVAYLKATPYKELPIFVRRSWST 197
>gi|448725585|ref|ZP_21708035.1| ribonuclease HII [Halococcus morrhuae DSM 1307]
gi|445798039|gb|EMA48468.1| ribonuclease HII [Halococcus morrhuae DSM 1307]
Length = 209
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 97/227 (42%), Gaps = 33/227 (14%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+ G+DEAGRGPVLG + C+ S T DSK L +RE L +L+ ++ V
Sbjct: 1 MFGVDEAGRGPVLGSLFVACV----SADATALPDGTDDSKRLAPARREALAAELRADERV 56
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
AV + P E+ LN L + AI GI+ DT DAE++
Sbjct: 57 TIAVSEVTPTEIDDGRLN----GLTVAAMADAIDRAVPTGESGIIDA---CDT--DAERF 107
Query: 136 QAKL-SQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGS 194
++ ++ ++ AD + V ASIVAKV RD + E H GS
Sbjct: 108 GRRVRAETATDVELAAEHGADESHEHVGAASIVAKVARDAHVADLAAE------HGAIGS 161
Query: 195 GYPGDHKHIIF---------GFPSLVRFSWGTCTSHFKDIVEVLWES 232
GYPGD F G P R SW T +D++E +S
Sbjct: 162 GYPGDGTTREFLREYVREHGGLPPFARASWKTS----RDVLEAADQS 204
>gi|390962065|ref|YP_006425899.1| ribonuclease HII [Thermococcus sp. CL1]
gi|390520373|gb|AFL96105.1| ribonuclease HII [Thermococcus sp. CL1]
Length = 232
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 66/217 (30%), Positives = 96/217 (44%), Gaps = 32/217 (14%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+ GIDEAGRGPV+GPMV + L L DSK L ++RE LF D +
Sbjct: 5 LAGIDEAGRGPVIGPMVIAAVVLDEVNVPRLEELGVKDSKKLTPKRRERLF------DEI 58
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
+D EL ++ LNE ++ + + ++ + VY+D A+
Sbjct: 59 VQLLDDYVILELWPGEIDSRGGTLNEFEVENFVKALN---SLKVKPDVVYIDA---ADVK 112
Query: 136 QAKLSQRFP-----SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHR 190
+A+ + + + KAD + VS ASI+AKVTRDR + E + +
Sbjct: 113 EARFGEEIRKGLDFEAEIIAEHKADDKFVPVSAASILAKVTRDRAI------EKLKEEYG 166
Query: 191 NFGSGYPGDHKHIIF---------GFPSLVRFSWGTC 218
GSGYP D + F FP +VR SW T
Sbjct: 167 EIGSGYPSDPRTRAFLENYYREHGTFPPIVRRSWKTL 203
>gi|378755758|gb|EHY65784.1| hypothetical protein NERG_01391 [Nematocida sp. 1 ERTm2]
Length = 352
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 82/290 (28%), Positives = 126/290 (43%), Gaps = 86/290 (29%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVG 76
+GIDEAGRGP+ GP+VY Y + T + DSK + ++KR +DL + SVG
Sbjct: 49 VGIDEAGRGPLAGPLVYSMAY----WVSDPDTKVYNDSKKVGKQKRVMQHKDLYKDKSVG 104
Query: 77 WAVDIIDPRELSAKML----NKNKINLNEI-------------------------SHDSA 107
+ + + P +S ML +K +L +I S+ +
Sbjct: 105 FIIRCLSPLFISINMLCTIRDKENKSLKKIPAKKTAKRQKLEPGIAEEAGKNKEPSYSTI 164
Query: 108 IGL-----------ITRV------LNIGILL-------------TEVYLDTVGDAEKYQA 137
+ + ++R+ L+IG +L EV++DTVG+ + +A
Sbjct: 165 LHMMGKTDLGPPIFVSRIRQNLNDLSIGCILELLNTSIKSGVQMQEVFVDTVGNKQTLRA 224
Query: 138 KLSQRFPSIKFV----VSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEET---AENMHR 190
K+ K + V +KADS Y VV ASI+AKVTRD + + ++ +
Sbjct: 225 KVVDLLKDSKGIKNVTVEEKADSKYQVVGAASILAKVTRDMFFENFDLSKMIYKGSSLPK 284
Query: 191 NFGSGYPGD-------HKHII--FGFPSLVRFSWGTCTSHFKDIVEVLWE 231
SGYP D K + GFPS+ R +W K I+EVL E
Sbjct: 285 IAVSGYPSDVNTKNWMKKSFLSGLGFPSIFRIAW-------KPILEVLQE 327
>gi|304315158|ref|YP_003850305.1| ribonuclease HII [Methanothermobacter marburgensis str. Marburg]
gi|302588617|gb|ADL58992.1| ribonuclease HII [Methanothermobacter marburgensis str. Marburg]
Length = 207
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 65/222 (29%), Positives = 99/222 (44%), Gaps = 30/222 (13%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
++GIDEAGRGPV+GP+V + P L + DSK L E+R+ L ++ V
Sbjct: 3 VLGIDEAGRGPVIGPLVVAGVMVPERKFSILRKMGIRDSKKLTPERRKFLARKIRRISRV 62
Query: 76 GWAVDIIDPRELSAKMLNKNK---INLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
+ V I SA +++ + NLNEI + +I +++ V +
Sbjct: 63 -FTVKI------SASDIDRMREKGFNLNEIEKIAIKRIIAEAQPDSVIIDSVDVKP---- 111
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHR-- 190
E+ ++ F I+ AD+ Y V+ ASI+AKV RD + E + +R
Sbjct: 112 ERLTEEIRSHFGDIEVKAEHGADAKYYPVAAASIIAKVERDLEI------ERIQKRNRKL 165
Query: 191 -NFGSGYPGDHKHIIF-------GFPSLVRFSWGTCTSHFKD 224
+ GSGYP D + F P VR SW T K+
Sbjct: 166 GDIGSGYPSDPRTRAFLESFSYDELPDFVRKSWATVQKRRKN 207
>gi|320100359|ref|YP_004175951.1| ribonuclease HII [Desulfurococcus mucosus DSM 2162]
gi|319752711|gb|ADV64469.1| ribonuclease HII [Desulfurococcus mucosus DSM 2162]
Length = 255
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 68/228 (29%), Positives = 105/228 (46%), Gaps = 37/228 (16%)
Query: 11 ASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELF-EDL 69
A + +G+DEAGRGP +G MV + P ++L ++ DSK L+ R ELF E L
Sbjct: 3 AGDTIEIGVDEAGRGPFVGDMVIVGVIGPSRVFESLVSIGLKDSKALEPVARRELFWEIL 62
Query: 70 KVN-DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILL------- 121
N D V W ++ P ++ N+NE+ + I I ++L+ L
Sbjct: 63 SSNVDIVAW---LVSP-------FTIDRGNMNELEY-IRICRILKLLSYSRLARSKPGNS 111
Query: 122 TEVYLDTVGDAEKYQAKLSQRF--PSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW 179
+Y+D V + + + R ++ V+ +AD+ YP VS AS++AKV RDR +
Sbjct: 112 LRIYVDEVKGYGESVRECAMRIYGEHVEVVMEPEADARYPAVSAASVIAKVIRDRNI--- 168
Query: 180 IFEETAENMHRNFGSGYPGDHKH-----IIFGF----PSLVRFSWGTC 218
+ + GSGYP D I+G P +R SWG
Sbjct: 169 ---DVLGKITGGLGSGYPSDPASRAWLATIYGRWDKPPVFIRRSWGIV 213
>gi|448593311|ref|ZP_21652309.1| ribonuclease HII [Haloferax elongans ATCC BAA-1513]
gi|445730219|gb|ELZ81809.1| ribonuclease HII [Haloferax elongans ATCC BAA-1513]
Length = 215
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 65/217 (29%), Positives = 98/217 (45%), Gaps = 32/217 (14%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVG 76
+G+DEAG+GPVLGPMV + + +TL ADSK L E+REEL +L+ D +
Sbjct: 3 IGVDEAGKGPVLGPMVAAAVR---ADPETLPE-GIADSKRLTPERREELAAELRERDDIS 58
Query: 77 WAVDIIDPRELSAKMLNKNKINLN---EISHDSAIGLITRVLNIGILLTEVYLDTVGDAE 133
V ++P + + N + + E + + A V + G + + V D
Sbjct: 59 VGVAFVEPETIDDPETDMNLLTVRAQVEAAAEVAADADELVCDAGDVSESRFGRRVRDG- 117
Query: 134 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG 193
+++ S++ +AD + +V ASIVAKV RDR + E + + G
Sbjct: 118 -----VAEAGASVEVHAQHRADDEHAIVGAASIVAKVERDRRV------EAIADEYGEVG 166
Query: 194 SGYPGDH-----------KHIIFGFPSLVRFSWGTCT 219
SGYP D +H I P R SW TC
Sbjct: 167 SGYPSDQTTRDFLREFVREHGI--LPDCARKSWSTCA 201
>gi|15679041|ref|NP_276158.1| ribonuclease HII [Methanothermobacter thermautotrophicus str. Delta
H]
gi|7227913|sp|O27102.1|RNH2_METTH RecName: Full=Ribonuclease HII; Short=RNase HII
gi|2622126|gb|AAB85519.1| ribonuclease HII [Methanothermobacter thermautotrophicus str. Delta
H]
Length = 206
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 64/216 (29%), Positives = 98/216 (45%), Gaps = 30/216 (13%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
++GIDEAGRGPV+GP+V + P L + DSK L E+R L ++ V
Sbjct: 3 VLGIDEAGRGPVIGPLVVAGVMIPERKFSILRKMGVKDSKKLTPERRRFLARKIRRIARV 62
Query: 76 GWAVDIIDPRELSAKMLNKNK---INLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
+ V I SA +++ + NLNEI + +I +++ V +
Sbjct: 63 -FTVKI------SASDIDRMRERGFNLNEIEKIAIKRIIPEAQPDRVIIDSVDV----KP 111
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHR-- 190
E+ + ++ F I+ AD+ Y V+ ASI+AKV RD + E+ + +R
Sbjct: 112 ERLEEEIRSHFGEIEVTAEHGADTRYYPVAAASIIAKVERDLEI------ESIQKKNRKL 165
Query: 191 -NFGSGYPGDHKHIIF-------GFPSLVRFSWGTC 218
+ GSGYP D + F P VR SW T
Sbjct: 166 GDIGSGYPSDPRTREFLESFTYDELPDFVRRSWATV 201
>gi|333986451|ref|YP_004519058.1| ribonuclease HII [Methanobacterium sp. SWAN-1]
gi|333824595|gb|AEG17257.1| ribonuclease HII [Methanobacterium sp. SWAN-1]
Length = 202
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 67/216 (31%), Positives = 100/216 (46%), Gaps = 31/216 (14%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I+GIDEAGRG VLGP+V + + + L L DSK L ++R L +K
Sbjct: 3 IVGIDEAGRGSVLGPLVVCGVAIEENRVKYLERLKLRDSKKLSPKRRIVLSRKIK----- 57
Query: 76 GWAVDIIDPRELSAK---MLNKNKINLNEISHDSAIGLI-TRVLNIGILLTEVYLDTVG- 130
+ P +++A+ +L +NLNEI + +I +I I+ D +
Sbjct: 58 --KIAECYPVKITAQDIDLLRSKDVNLNEIEKIAMKKIIGDSEPDISII------DCIDV 109
Query: 131 DAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHR 190
++++A++ +++ V KAD Y +VS ASIVAKV RD + + +
Sbjct: 110 KPKRFKAEIETYKENLEVVAEHKADDKYVIVSAASIVAKVERDSEV------QKIRKEFK 163
Query: 191 NFGSGYPGDHKHIIF-------GFPSLVRFSWGTCT 219
GSGYP D K I F P VR SW T
Sbjct: 164 EIGSGYPSDPKTIAFLKKTSYEDLPDFVRKSWATVA 199
>gi|297527144|ref|YP_003669168.1| ribonuclease HII [Staphylothermus hellenicus DSM 12710]
gi|297256060|gb|ADI32269.1| ribonuclease HII [Staphylothermus hellenicus DSM 12710]
Length = 244
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 66/217 (30%), Positives = 106/217 (48%), Gaps = 25/217 (11%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFED-LKVNDSV 75
+G+DEAGRGP++G +V L + + L ++ DSK L R L + LK+ DS
Sbjct: 10 IGVDEAGRGPLIGDLVIAILIISRNKIEKLISIGVKDSKQLTRHTRLSLAKKILKLADSA 69
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
+ I P + + N N+I +I A+ L + V+N +Y+D + + Y
Sbjct: 70 --LIIYISPEIIDS--YNINRIIAEKIIL--ALKLFSPVIN-HYRTASIYIDEIKGYKNY 122
Query: 136 -QAKLSQRFPSI-KFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG 193
A LS+ +I ++V+ AD YPVVS ASI+AK RD+ + + + ++ N G
Sbjct: 123 ILANLSKYINNIEEYVMEPNADQKYPVVSAASILAKTIRDKNI------DFLKKIYGNLG 176
Query: 194 SGYPGDHKHIIFGF---------PSLVRFSWGTCTSH 221
SGYP D I + P ++R +W T +
Sbjct: 177 SGYPSDRVTINWLIKTYNGEKEPPLIIRRTWSTLRKY 213
>gi|289582357|ref|YP_003480823.1| ribonuclease HII [Natrialba magadii ATCC 43099]
gi|448282223|ref|ZP_21473512.1| ribonuclease HII [Natrialba magadii ATCC 43099]
gi|289531910|gb|ADD06261.1| ribonuclease HII [Natrialba magadii ATCC 43099]
gi|445576857|gb|ELY31305.1| ribonuclease HII [Natrialba magadii ATCC 43099]
Length = 221
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 62/222 (27%), Positives = 103/222 (46%), Gaps = 38/222 (17%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVG 76
+G+DEAG+GPVLG M ++ ++T+ ADSK L +R+EL L+ +D +G
Sbjct: 3 IGVDEAGKGPVLGSMFAAAVHV---ERETVLPDGIADSKRLTPARRDELAATLREDDRIG 59
Query: 77 WAVDIIDPRELSAKMLNKNKINLNEIS---HDSAIGLITRVLNIGILLTEVYLDTVGDAE 133
V E++ ++ + ++N +S H AI + + +T + DA+
Sbjct: 60 VGV-----AEITTAQIDDPETDMNSLSVRAHAEAIEAVAADTVLEAPITGLCDACDTDAD 114
Query: 134 KYQAKLSQRFPSIKFVVSKK--ADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRN 191
++ +++ R ++ +S + AD P+V ASI+AKV RD + E++
Sbjct: 115 RFARRVADRC-GLECTISAEHGADDDSPIVGAASIIAKVERDTHV---------ESVSAA 164
Query: 192 F------GSGYPGDHKHIIF---------GFPSLVRFSWGTC 218
F GSGYP D F P+ R SW TC
Sbjct: 165 FPDCGPVGSGYPSDPNTRAFLESYVDAHGELPACARESWSTC 206
>gi|239623747|ref|ZP_04666778.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239521778|gb|EEQ61644.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 219
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 99/192 (51%), Gaps = 33/192 (17%)
Query: 9 KWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFED 68
++ S+ I GIDEAGRGP+ GP+ G + P + L DSK L E++REELFE+
Sbjct: 27 EYGSSAFICGIDEAGRGPLAGPVAAGAVILP----KDCRILYLNDSKKLSEKRREELFEE 82
Query: 69 LKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDS---AIGLITRVLNIGILLTEVY 125
+K +V W+V I P + ++IN+ + ++++ A+G +T + +LL +
Sbjct: 83 IK-EKAVAWSVGIATPARI-------DEINILQATYEAMREAVGQLT--VKPDVLLNDAV 132
Query: 126 LDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW--IFEE 183
T+ D + Q P I K D+ ++ ASI+AKVTRD + G+ +F
Sbjct: 133 --TIPDLDILQ------VPII------KGDAKSLSIAAASILAKVTRDHMMAGYEEMFPG 178
Query: 184 TAENMHRNFGSG 195
H+ +G+
Sbjct: 179 YGFAKHKGYGTA 190
>gi|374857159|dbj|BAL60012.1| ribonuclease HII [uncultured candidate division OP1 bacterium]
Length = 207
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 73/222 (32%), Positives = 98/222 (44%), Gaps = 31/222 (13%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I+GIDEAGRG V+GP+ + L+ L DSK L KR L + ++
Sbjct: 3 ILGIDEAGRGCVIGPLCVAGVVISAEDLDRLSALGVRDSKKLSRHKRALLAQQIEQLAHR 62
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLD-TVGDA-- 132
V+ I P EL NL EI A+G I R VYLD VG
Sbjct: 63 VIVVE-IGPSELDE--------NLTEIEL-QAMGQIIRESQT----DRVYLDLPVGPQAR 108
Query: 133 EKYQAKLSQRFPSIKF--VVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHR 190
E++ L + + F V +AD+ YP+VS ASI+AKV+RDR + E +
Sbjct: 109 ERFVHALREHAGTHSFALVAENRADATYPIVSAASIIAKVSRDRAI------ERLREEYG 162
Query: 191 NFGSGYPGDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWES 232
+FG GYP + K F L +F C F D W +
Sbjct: 163 DFGWGYPSEPKTRAF----LKKFY--ECNGRFPDCARAKWRT 198
>gi|126647908|ref|XP_001388063.1| hypothetical protein [Cryptosporidium parvum Iowa II]
gi|126117151|gb|EAZ51251.1| conserved hypothetical protein [Cryptosporidium parvum Iowa II]
Length = 144
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 61/114 (53%), Gaps = 18/114 (15%)
Query: 143 FPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAE------NMHRNF--GS 194
FP I V KAD+L+P VSGASI+AKV RD L W + + E N N+ GS
Sbjct: 4 FPGINITVKPKADALFPSVSGASILAKVKRDDFLSNWWTQASVESCDFNGNKISNYEQGS 63
Query: 195 GYPGDHK---------HIIFGFPSLVRFSWGTCTSHF-KDIVEVLWESDEMDED 238
GYPGD K +FGFP++VRFSW T + KD V W E++ +
Sbjct: 64 GYPGDPKTKDFLRRVFDPVFGFPNIVRFSWSTASEIIEKDGYSVNWGELELNNN 117
>gi|48478335|ref|YP_024041.1| ribonuclease HII [Picrophilus torridus DSM 9790]
gi|73917829|sp|Q6KZK4.1|RNH2_PICTO RecName: Full=Ribonuclease HII; Short=RNase HII
gi|48430983|gb|AAT43848.1| ribonuclease HII [Picrophilus torridus DSM 9790]
Length = 199
Score = 77.0 bits (188), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 67/224 (29%), Positives = 103/224 (45%), Gaps = 40/224 (17%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNF--ADSKTLKEEKREELFEDLKVN 72
C+ GIDEAGRGPV+GPMV + C +NF DSK L KR +F D+
Sbjct: 2 CVCGIDEAGRGPVIGPMVMA-MVCA-------DDINFYVNDSKLLTRNKRSLIFNDVS-- 51
Query: 73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
+ II+P E+ + K +LN + A LI + ++Y+D
Sbjct: 52 -GLYHKYYIINPAEIDDAV---KKHSLNNLEEQYAEKLILKA-----ECEKIYIDCFDVN 102
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF 192
E ++ + + + AD +VS ASI+AKV RD + E ++++ +F
Sbjct: 103 ESRLERILKDRTGKEVICRHHADRDIKIVSAASIIAKVLRDNEI------EKLKSIYGDF 156
Query: 193 GSGYPGDHKHIIF---------GFPSLVRFSWGTCTSHFKDIVE 227
GSGYP D K + F ++VR W T +K++V+
Sbjct: 157 GSGYPSDPKTLRFLEHSIINHDNIDNIVRKEWKT----YKNLVQ 196
>gi|448376204|ref|ZP_21559488.1| ribonuclease HII [Halovivax asiaticus JCM 14624]
gi|445658222|gb|ELZ11045.1| ribonuclease HII [Halovivax asiaticus JCM 14624]
Length = 235
Score = 77.0 bits (188), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 61/227 (26%), Positives = 97/227 (42%), Gaps = 27/227 (11%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+ G+DEAG+GP +GPM+ + + ADSK L ++RE+L L+ D++
Sbjct: 6 VFGVDEAGKGPAIGPMIAAAVRV---ADRGHLPDGMADSKDLAPDRREDLAARLRSADAI 62
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG----- 130
V I P ++ + ++N ++ + G I L + +D
Sbjct: 63 AVGVCAITP-----DRIDDPETDMNGLAVAAHTGAIEAALADADHGSGADVDPPAGVCDA 117
Query: 131 ---DAEKYQAKLSQRFP-SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAE 186
DA+++ +++ I AD+ P+V ASIVAKV RD + + E A+
Sbjct: 118 CDTDADRFARRVTDACSHPIDVAAEHGADADDPLVGAASIVAKVERDARM-ADVAETYAD 176
Query: 187 NMHRNFGSGYPGDHKHIIF---------GFPSLVRFSWGTCTSHFKD 224
+ + GSGYP D K F P R SW TC D
Sbjct: 177 AGYGDPGSGYPSDPKTRAFLEAHVDETGRLPDCARRSWATCRDVLAD 223
>gi|67613277|ref|XP_667290.1| ribonuclease HI large subunit [Cryptosporidium hominis TU502]
gi|54658405|gb|EAL37055.1| similar to ribonuclease HI large subunit (RNase HI large subunit)
[Cryptosporidium hominis]
Length = 144
Score = 77.0 bits (188), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 61/114 (53%), Gaps = 18/114 (15%)
Query: 143 FPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAE------NMHRNF--GS 194
FP I V KAD+L+P VSGASI+AKV RD L W + + E N N+ GS
Sbjct: 4 FPGIDITVKPKADALFPSVSGASILAKVKRDDFLSNWWTQASVESCDFNGNKISNYEQGS 63
Query: 195 GYPGDHK---------HIIFGFPSLVRFSWGTCTSHF-KDIVEVLWESDEMDED 238
GYPGD K +FGFP++VRFSW T + KD V W E++ +
Sbjct: 64 GYPGDPKTKEFLRRVFDPVFGFPNIVRFSWSTASEIIEKDGYSVNWGELELNNN 117
>gi|448577303|ref|ZP_21642933.1| ribonuclease HII [Haloferax larsenii JCM 13917]
gi|445727948|gb|ELZ79557.1| ribonuclease HII [Haloferax larsenii JCM 13917]
Length = 215
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 67/217 (30%), Positives = 98/217 (45%), Gaps = 32/217 (14%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVG 76
+G+DEAG+GPVLGPMV + + +TL ADSK L +REEL +L+ D +
Sbjct: 3 IGVDEAGKGPVLGPMVAAAVR---ADPETLPE-GIADSKRLTPARREELAAELRERDDIS 58
Query: 77 WAVDIIDPRELSAKMLNKNKINLN---EISHDSAIGLITRVLNIGILLTEVYLDTVGDAE 133
V ++P + + N + + E + A+ V + G + + V D
Sbjct: 59 VGVAFVEPETIDDPETDMNLLTVRAQVEAAAAVAVDADELVCDAGDVSESRFGRRVRDG- 117
Query: 134 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG 193
+++ S++ +AD + +V ASIVAKV RDR + I EE E G
Sbjct: 118 -----VAEAGASVEVHAQHRADDEHAIVGAASIVAKVERDRRVEA-IAEEYGE-----VG 166
Query: 194 SGYPGDH-----------KHIIFGFPSLVRFSWGTCT 219
SGYP D +H I P R SW TC
Sbjct: 167 SGYPSDQTTRDFLREFVREHGI--LPDCARKSWSTCA 201
>gi|435846199|ref|YP_007308449.1| RNase HII [Natronococcus occultus SP4]
gi|433672467|gb|AGB36659.1| RNase HII [Natronococcus occultus SP4]
Length = 224
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 63/228 (27%), Positives = 99/228 (43%), Gaps = 37/228 (16%)
Query: 18 GIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGW 77
G+DEAG+GPVLG M ++ S L ADSK L E+REEL L+ +D +
Sbjct: 4 GVDEAGKGPVLGSMFAAAVH--VSEPDALPE-GIADSKRLAPERREELDATLREDDRIAV 60
Query: 78 AVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEV-------YLDTVG 130
V E++ +++ + ++N ++ + I L L + DT
Sbjct: 61 GV-----SEITPPLIDDPETDMNSLAVRAHAEAIEGALEAAELPADPSASGRCDACDT-- 113
Query: 131 DAEKYQAKLS-----QRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETA 185
DA+++ +++ +R ++ + AD P+V AS+VAKV RD ++ E
Sbjct: 114 DADRFARRVADTCEPERDLELELTAAHGADDEDPIVGAASVVAKVERDASMAALADE--- 170
Query: 186 ENMHRNFGSGYPGDHKHIIF---------GFPSLVRFSWGTCTSHFKD 224
+ + GSGYP D F P R SW TC D
Sbjct: 171 ---YGSVGSGYPSDPTTREFLESYVADHGELPPFARESWSTCADVLAD 215
>gi|335436880|ref|ZP_08559669.1| ribonuclease HII [Halorhabdus tiamatea SARL4B]
gi|334897145|gb|EGM35282.1| ribonuclease HII [Halorhabdus tiamatea SARL4B]
Length = 256
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 97/213 (45%), Gaps = 34/213 (15%)
Query: 18 GIDEAGRGPVLGPMVYGCLYC-PCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVG 76
G+DEAG+GPVLG M C+ P + DSK L E+REEL + + D
Sbjct: 48 GVDEAGKGPVLGSMFAACIVADPADLPD-----DVDDSKDLAPERREELA--VVIRDR-- 98
Query: 77 WAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGD--AEK 134
D + E+ ++ + ++N ++ + + V + G+ YLD GD A +
Sbjct: 99 --ADAVAVSEIPVARIDDPETDMNTLTVAAHAEALEPVASDGLA---TYLD-AGDTNAVR 152
Query: 135 YQAKLSQRFPS-IKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG 193
++ +++ R + + AD+ YP+V ASIVAKV RD + E + + G
Sbjct: 153 FERRVADRVEADLDLRAEHGADAAYPIVGAASIVAKVERDAHVAALAAE------YGDLG 206
Query: 194 SGYPGDHKHIIF---------GFPSLVRFSWGT 217
SGYPGD F P+ R SW T
Sbjct: 207 SGYPGDSTTRAFLERYIEEHGELPACARESWQT 239
>gi|161528901|ref|YP_001582727.1| ribonuclease HII [Nitrosopumilus maritimus SCM1]
gi|160340202|gb|ABX13289.1| ribonuclease HII [Nitrosopumilus maritimus SCM1]
Length = 205
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 104/214 (48%), Gaps = 34/214 (15%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL--KVND 73
I G+D+AGRG +LGP+V + + L++L DSK L + RE L++ + V+D
Sbjct: 3 ICGVDDAGRGSMLGPLVISGISINKKNLRKLSSLGVKDSKKLSPKSRELLYKQIIELVDD 62
Query: 74 SVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG-DA 132
+ + I PR + A + K LNE+ ++ ++ Y+D+ +
Sbjct: 63 ---YYIAKITPRSIDASV---KKHGLNELEAKYMAKVVLKLDP-----DTSYVDSCDVNP 111
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF 192
+++ ++S+ + K ADS + VVS ASI+AKVTRDR + E + + +
Sbjct: 112 KRFGKEISKLSDNHKIKSYHHADSRFVVVSAASIIAKVTRDRAI---------EKLRKTY 162
Query: 193 --GSGYPGDHKHIIF---------GFPSLVRFSW 215
GSGYP D K + F P+ VR SW
Sbjct: 163 DLGSGYPSDSKTVKFVTRYYKTSKSLPTFVRKSW 196
>gi|448458612|ref|ZP_21596278.1| ribonuclease HII [Halorubrum lipolyticum DSM 21995]
gi|445809124|gb|EMA59171.1| ribonuclease HII [Halorubrum lipolyticum DSM 21995]
Length = 234
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/224 (27%), Positives = 91/224 (40%), Gaps = 29/224 (12%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVG 76
+G+DEAG+GPVLGPMV + ++ + DSK L +RE + E ++ D V
Sbjct: 3 LGVDEAGKGPVLGPMVAAAVLA----DPSVLPADVDDSKRLAPARRESIDEAIRATDRVA 58
Query: 77 WAVDIIDPRELSAKMLNKNKINLNEISHDSAIGL-----------ITRVLNIGILLTEVY 125
V ++P E+ + N + + + + L + V + G +
Sbjct: 59 VGVAFVEPAEIDRPDTDMNTLTVRGQARAARAALGGAVAADLDEPVRVVADAGDTSESRF 118
Query: 126 LDTVGD--AEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEE 183
+G+ A A P++ + AD PVV AS+VAKV RD + E
Sbjct: 119 ARRLGEFVAGTGSATTDTDLPAVDVSAAHGADEDDPVVGAASVVAKVARDERMAAVDAEY 178
Query: 184 TAENMHRNFGSGYPGDHKHIIF---------GFPSLVRFSWGTC 218
A + GSGYP D F P R SW TC
Sbjct: 179 AA---YDGVGSGYPSDPTTRSFLRAHVDDHGEVPDCARRSWATC 219
>gi|330831767|ref|XP_003291928.1| hypothetical protein DICPUDRAFT_11524 [Dictyostelium purpureum]
gi|325077872|gb|EGC31557.1| hypothetical protein DICPUDRAFT_11524 [Dictyostelium purpureum]
Length = 206
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 64/213 (30%), Positives = 99/213 (46%), Gaps = 23/213 (10%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVG 76
+ IDEAG+G +LGP+V C+ +Q DSK L KRE L+ +L S+
Sbjct: 3 ISIDEAGKGSLLGPLVVSCVVMDSKTEQLFKEQGVKDSKQLSPLKRESLY-NLISEKSIY 61
Query: 77 WAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLIT-RVLNIGI-LLTEVYLDTV-GDAE 133
I+ ++ + ++ LNEI + LI +LN+ +V LD++ ++E
Sbjct: 62 HQTIILSNHDIDKR---RSLHTLNEIETNIFYQLIKDSILNLAKNQPVKVILDSIESNSE 118
Query: 134 KYQAKLSQRF--PSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRN 191
KY F P+ + + KAD Y V ASI+AKV RD+ ++ E + +
Sbjct: 119 KYSLPFKSYFGSPTCEIICETKADIKYTSVGAASILAKVKRDQFIKSLEIE-----LDQT 173
Query: 192 FGSGYPGD---------HKHIIFGFPSLVRFSW 215
GSGYP D + F +P +R SW
Sbjct: 174 IGSGYPSDSITTEFVNSYLKKNFEYPDSMRRSW 206
>gi|448534698|ref|ZP_21621856.1| ribonuclease HII [Halorubrum hochstenium ATCC 700873]
gi|445704309|gb|ELZ56226.1| ribonuclease HII [Halorubrum hochstenium ATCC 700873]
Length = 236
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 63/232 (27%), Positives = 96/232 (41%), Gaps = 43/232 (18%)
Query: 17 MGIDEAGRGPVLGPMVYGC-LYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+G+DEAG+GP LGPMV + P S + DSK + ++RE + L + V
Sbjct: 3 LGVDEAGKGPALGPMVAAAVIAAPSSLPA-----DVDDSKRIAPDRREAMAAALDEDPEV 57
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
V ++P E+ + N + + + L R IG + V D +E+
Sbjct: 58 AVGVARVEPAEIDRPDTDMNTLTVRGQARAVRAALADRPAGIGEPV-RVVADAGDTSEER 116
Query: 136 QAKLSQRF----------------PSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW 179
A+ + F P++ + AD+ P+V AS+VAKVTRD +
Sbjct: 117 FARRLREFVAAGEDGDRAEGGDPVPAVDVTAAHGADADDPLVGAASVVAKVTRDAAM--- 173
Query: 180 IFEETAENMHRNFGSGYP-------------GDHKHIIFGFPSLVRFSWGTC 218
+ A + + GSGYP GDH + P R SW TC
Sbjct: 174 ATVDAAYPEYDDVGSGYPSDPATRSFIAAYVGDHGRL----PDCARESWATC 221
>gi|433637107|ref|YP_007282867.1| ribonuclease H, mammalian HI/archaeal HII subfamily [Halovivax
ruber XH-70]
gi|433288911|gb|AGB14734.1| ribonuclease H, mammalian HI/archaeal HII subfamily [Halovivax
ruber XH-70]
Length = 232
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/234 (26%), Positives = 98/234 (41%), Gaps = 40/234 (17%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+ G+DEAG+GP +GPM+ + ++ ADSK L ++RE+L L+ D V
Sbjct: 2 VFGVDEAGKGPAIGPMIAVAVRV---ADRSHLPDGMADSKDLAPDRREDLAARLRAADDV 58
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG----- 130
V I ++ ++ + ++N ++ + I L + LD G
Sbjct: 59 AVGVCAI-----TSDRIDDPETDMNGLA------VAAHAGAIEAALADAGLDGAGTDDDP 107
Query: 131 ----------DAEKYQAKLSQRF-PSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW 179
DA+++ +++ P I AD+ P+V ASIVAKV RD +
Sbjct: 108 PAGICDACDTDADRFARRVTDACSPPIDVAAKHGADADDPLVGAASIVAKVERDARM-AD 166
Query: 180 IFEETAENMHRNFGSGYPGDHKHIIF---------GFPSLVRFSWGTCTSHFKD 224
I A+ + + GSGYP D K F P R SW TC D
Sbjct: 167 IAATYADAGYGDPGSGYPSDPKTRAFLEAHVDETGRLPDCARRSWATCRDVLAD 220
>gi|448733907|ref|ZP_21716147.1| ribonuclease HII [Halococcus salifodinae DSM 8989]
gi|445801893|gb|EMA52208.1| ribonuclease HII [Halococcus salifodinae DSM 8989]
Length = 223
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 91/218 (41%), Gaps = 32/218 (14%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVG 76
G+DEAGRGPVLG + C+ + DSK L +RE L ++L+ +D +
Sbjct: 5 FGVDEAGRGPVLGSLFVACVRA----DPAVLPAGIDDSKRLSPARRETLADELRADDRIA 60
Query: 77 WAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG------ 130
A RE++ ++ +LN ++ ++A I V +IG G
Sbjct: 61 VAT-----REVTPSAIDAPDTDLNALTIEAAGATIDSVASIGADAKATADGLAGVVDACD 115
Query: 131 -DAEKYQAKLSQRFPS-IKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENM 188
D E++ ++ + + ++ AD + +V AS+VAKV RD + E
Sbjct: 116 TDTERFGRRVHEAATADVEITAEHGADEEHALVGAASVVAKVARDAHIADLADE------ 169
Query: 189 HRNFGSGYPGDHKHIIF---------GFPSLVRFSWGT 217
H GSGYP D F P R SW T
Sbjct: 170 HGPIGSGYPSDPTTREFLAEYVREHGDLPPFARRSWKT 207
>gi|448327673|ref|ZP_21516995.1| ribonuclease HII [Natrinema versiforme JCM 10478]
gi|445617302|gb|ELY70900.1| ribonuclease HII [Natrinema versiforme JCM 10478]
Length = 223
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/225 (28%), Positives = 93/225 (41%), Gaps = 30/225 (13%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVG 76
G+DEAG+GP LG M ++C + DSK L E+REEL L+ +D +
Sbjct: 3 FGVDEAGKGPALGSMFAAAVHC---EDSAVLPDGIRDSKRLSPERREELAATLRADDRIA 59
Query: 77 WAVDIIDPRELSAKMLNKNKINLNEISHDSAI-GLITRVLNIGILLTEV-----YLDTVG 130
V I P + + N + + +H AI G + + G + DT
Sbjct: 60 VGVAEIPPTRIDDSETDMNSLAV--AAHAEAIEGAVADLERDGTATEPISGLCDACDT-- 115
Query: 131 DAEKYQAKLSQRFPSIKFVVSKK--ADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENM 188
DA+++ +++ + V + AD +V ASI+AKV RD + + E
Sbjct: 116 DADRFARRVADACSLERLAVDARHGADDDSLLVGAASIIAKVERDAHMAAFADE------ 169
Query: 189 HRNFGSGYPGDHKHIIF---------GFPSLVRFSWGTCTSHFKD 224
+ GSGYPGD F P R SW TC D
Sbjct: 170 YGPVGSGYPGDSTTREFLASYVDEHRELPPFARASWSTCEDALAD 214
>gi|419705468|ref|ZP_14233006.1| ribonuclease [Mycoplasma canis UFG1]
gi|419706119|ref|ZP_14233650.1| ribonuclease [Mycoplasma canis UFG4]
gi|384394771|gb|EIE41205.1| ribonuclease [Mycoplasma canis UFG1]
gi|384394924|gb|EIE41357.1| ribonuclease [Mycoplasma canis UFG4]
Length = 200
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 81/164 (49%), Gaps = 26/164 (15%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+ G DEAGRGPV GP+V C+ P Y + DSK L E+KRE LFE++K N ++
Sbjct: 14 VAGCDEAGRGPVCGPLVAACVILPLDYANEM----IDDSKKLSEKKREILFEEIKQN-AI 68
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
+ ++I R + ++IN +S IG++ + + I V D
Sbjct: 69 DYYIEI---RSV-------DEINRTNPKKESQIGMVNAIKKLKIKPEYVLTDF------- 111
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW 179
K+ P + K D L ++ ASI+AKVTRDR L+ +
Sbjct: 112 -EKIDIEIPQTNLI---KGDQLSLNIAAASILAKVTRDRILKEY 151
>gi|448599595|ref|ZP_21655398.1| ribonuclease HII [Haloferax alexandrinus JCM 10717]
gi|445736268|gb|ELZ87812.1| ribonuclease HII [Haloferax alexandrinus JCM 10717]
Length = 215
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/218 (28%), Positives = 95/218 (43%), Gaps = 34/218 (15%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYC-PCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+G+DEAG+GPVLGPMV + P + ADSK L E+REEL +L+ D +
Sbjct: 3 IGVDEAGKGPVLGPMVAAAVRADPDALPD-----GIADSKRLAPERREELAAELRERDDI 57
Query: 76 GWAVDIIDPRELSAKMLNKNKINLN---EISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
V ++P + + N + + E + + A V + G + +
Sbjct: 58 SVGVAFVEPETIDDPETDMNLLTVRAQVEAAAEVAADADELVCDAGDVSESRF------G 111
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF 192
+ + L++ S++ +AD + +V ASIVAKV RDR + E + +
Sbjct: 112 RRVREGLAEAGVSVEVRAQHRADDEHAIVGAASIVAKVERDRRV------EAIADEYGEV 165
Query: 193 GSGYPGD-----------HKHIIFGFPSLVRFSWGTCT 219
GSGYP D H I P R SW TC
Sbjct: 166 GSGYPSDGTTREFLREYVRDHGI--LPDCARKSWSTCA 201
>gi|429191022|ref|YP_007176700.1| ribonuclease H, mammalian HI/archaeal HII subfamily
[Natronobacterium gregoryi SP2]
gi|448327412|ref|ZP_21516740.1| ribonuclease HII [Natronobacterium gregoryi SP2]
gi|429135240|gb|AFZ72251.1| ribonuclease H, mammalian HI/archaeal HII subfamily
[Natronobacterium gregoryi SP2]
gi|445608510|gb|ELY62349.1| ribonuclease HII [Natronobacterium gregoryi SP2]
Length = 221
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 68/219 (31%), Positives = 94/219 (42%), Gaps = 32/219 (14%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVG 76
G+DEAG+GPVLG M +Y P + ADSK L E RE+L L+ +D G
Sbjct: 3 FGVDEAGKGPVLGSMFAAAVYVP---EAAALPDGIADSKRLAPEHREKLAATLREDDRFG 59
Query: 77 WAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQ 136
V E+S +++ ++N ++ ++ I L L + +D + DA
Sbjct: 60 IGV-----AEISTGRIDEPTTDMNSLTVEAHANAIEAALEDCALEND-SVDGLCDACDTD 113
Query: 137 AKLSQRFPSIKFVVSKK--------ADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENM 188
A R + +S+ AD PVV ASIVAKV RD + I EE
Sbjct: 114 ANRFARRVADAASLSRDLDLEARHGADDDSPVVGAASIVAKVERDAHV-AAISEE----- 167
Query: 189 HRNFGSGYPGDHKHIIF---------GFPSLVRFSWGTC 218
+ + GSGYP D F P R SW TC
Sbjct: 168 YGDVGSGYPSDPTTREFLESYVDDHGELPPFARSSWSTC 206
>gi|148643039|ref|YP_001273552.1| ribonuclease HII [Methanobrevibacter smithii ATCC 35061]
gi|222445276|ref|ZP_03607791.1| hypothetical protein METSMIALI_00904 [Methanobrevibacter smithii
DSM 2375]
gi|261350165|ref|ZP_05975582.1| ribonuclease HII [Methanobrevibacter smithii DSM 2374]
gi|189043626|sp|A5ULV6.1|RNH2_METS3 RecName: Full=Ribonuclease HII; Short=RNase HII
gi|148552056|gb|ABQ87184.1| ribonuclease HII, RnhB [Methanobrevibacter smithii ATCC 35061]
gi|222434841|gb|EEE42006.1| ribonuclease HII [Methanobrevibacter smithii DSM 2375]
gi|288860951|gb|EFC93249.1| ribonuclease HII [Methanobrevibacter smithii DSM 2374]
Length = 207
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 70/212 (33%), Positives = 97/212 (45%), Gaps = 23/212 (10%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
++GIDEAGRG VLGP+V + P L + DSK L +R L LK
Sbjct: 3 VLGIDEAGRGSVLGPLVIAGVIVPEKMDIVLERMGVKDSKRLTPNRRTILSRKLK--KMF 60
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG-DAEK 134
+ + +I +++ + + INLNEI IG+ + N+ + +D V AE+
Sbjct: 61 EYDLVVISAQDIDN--MRADGINLNEIER---IGMEKILSNLN--PEKAIVDAVDIKAER 113
Query: 135 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHR-NFG 193
+Q KL+ + V KAD Y VS ASI+AK RD I E + + G
Sbjct: 114 FQNKLAND-TGVNVVAEHKADDNYIEVSAASIIAKQERD----AHIAEINKDYIKMGGIG 168
Query: 194 SGYPGD--HKHIIFGF-----PSLVRFSWGTC 218
SGYP D K + F P VR SW T
Sbjct: 169 SGYPSDPITKKFLTNFTYDEMPDFVRKSWATV 200
>gi|327311983|ref|YP_004338880.1| ribonuclease HII [Thermoproteus uzoniensis 768-20]
gi|326948462|gb|AEA13568.1| ribonuclease HII [Thermoproteus uzoniensis 768-20]
Length = 203
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 67/208 (32%), Positives = 103/208 (49%), Gaps = 26/208 (12%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFE-DLKVNDS 74
+ GIDEAGRGPV+GPMV + ++ L L DSK L + RE L+ LK +
Sbjct: 3 VAGIDEAGRGPVVGPMVLAIV---AGNEKALRALGVRDSKELSRKARERLYPLILKSAEC 59
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
V + V ++P + + +K+NL E + + R+ + + Y+D+ +
Sbjct: 60 VNYVV--LEPHVID-EWAASHKLNLLEAEEAAK---LMRLCDADVY----YVDSPDPKPE 109
Query: 135 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGS 194
++L R + V KA+ + P V+ ASIVAKV RDR + + + +FGS
Sbjct: 110 RFSELLSRMSGRRVVAMNKAERV-PQVAAASIVAKVVRDRLV------DMLRSEMGDFGS 162
Query: 195 GYPGDHKHIIF---GFPSL--VRFSWGT 217
GYP D K I G ++ +R SWGT
Sbjct: 163 GYPSDSKTISALRSGKIAVECIRHSWGT 190
>gi|448355147|ref|ZP_21543900.1| ribonuclease HII [Natrialba hulunbeirensis JCM 10989]
gi|445635912|gb|ELY89077.1| ribonuclease HII [Natrialba hulunbeirensis JCM 10989]
Length = 221
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/221 (27%), Positives = 96/221 (43%), Gaps = 36/221 (16%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVG 76
+G+DEAG+GP LG M ++ ++T+ ADSK L +R+EL L+ ND +G
Sbjct: 3 IGVDEAGKGPALGSMFAAAVHV---ERETVLPDGIADSKRLTPARRDELAAILRENDQIG 59
Query: 77 WAVDIIDPRELSAKMLNKNKINLNEIS---HDSAIGLITRVLNIGILLTEVYLDTVGDAE 133
V E++ ++ + ++N +S H AI + + ++ DA+
Sbjct: 60 VGV-----AEITTAQIDDPETDMNSLSVQAHAEAIEAVAADTGLETPISGHCDACDTDAD 114
Query: 134 KYQAKLSQRFP-SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF 192
++ +++ R AD PVV ASI+AKV RD + E++ F
Sbjct: 115 RFARRVADRCGLECTITAEHGADDDSPVVGAASIIAKVERDAHV---------ESISAGF 165
Query: 193 ------GSGYPGDHKHIIF---------GFPSLVRFSWGTC 218
GSGYP D F P+ R SW TC
Sbjct: 166 PDCGPVGSGYPSDPNTRAFLESYVDAHGELPACARESWSTC 206
>gi|383787360|ref|YP_005471929.1| ribonuclease HII [Fervidobacterium pennivorans DSM 9078]
gi|383110207|gb|AFG35810.1| ribonuclease HII [Fervidobacterium pennivorans DSM 9078]
Length = 251
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 92/183 (50%), Gaps = 27/183 (14%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
I+G+DEAGRGP+ GP+V +Y + + + ADSK L E++REEL+ ++
Sbjct: 24 SIIGVDEAGRGPLFGPVVAAAVY----FDEGVYVEGIADSKALSEKQREELYNEIFARAK 79
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
G + P E+ N + E++ + A+ ++++ + I V++D
Sbjct: 80 FGLG--LATPEEIDL----YNIFHATELAMNRALKILSQFVEI----KNVFVDG------ 123
Query: 135 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGS 194
L FP++ V K DS +S ASI+AKVTRD+ + + F+ N+ ++
Sbjct: 124 --KNLKLEFPAVCVV---KGDSKIYQISAASILAKVTRDKIIEKFHFQYPEYNLIKH--K 176
Query: 195 GYP 197
GYP
Sbjct: 177 GYP 179
>gi|386876647|ref|ZP_10118743.1| ribonuclease HII [Candidatus Nitrosopumilus salaria BD31]
gi|386805548|gb|EIJ65071.1| ribonuclease HII [Candidatus Nitrosopumilus salaria BD31]
Length = 206
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 65/211 (30%), Positives = 102/211 (48%), Gaps = 28/211 (13%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFED-LKVNDS 74
I G+D+AGRG +LGP+V + + L+ L DSK L + RE+L++ +K+ DS
Sbjct: 3 ICGVDDAGRGSMLGPLVIAGISLDKKNLKQLSLLGVKDSKKLSPKSREDLYKKIIKIADS 62
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG-DAE 133
+ V I P+ + A + N + +N+ E + + + LN Y+D+ +
Sbjct: 63 --YYVVKISPKSIDASVKN-HCLNVLEAKY---MAKVVSKLN----PDTSYVDSCDVNPS 112
Query: 134 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG 193
++ ++S+ + K ADS + +VS ASI+AKV RDR + T N G
Sbjct: 113 RFGREISKMSDNHKIKSYHHADSRFVIVSAASILAKVARDRAI-------TKLRKDHNLG 165
Query: 194 SGYPGDHKHIIF---------GFPSLVRFSW 215
SGYP D + F PS VR SW
Sbjct: 166 SGYPSDSVTVKFVTNYYKKNHVMPSFVRKSW 196
>gi|448570098|ref|ZP_21639092.1| ribonuclease HII [Haloferax lucentense DSM 14919]
gi|445723399|gb|ELZ75041.1| ribonuclease HII [Haloferax lucentense DSM 14919]
Length = 215
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 64/218 (29%), Positives = 95/218 (43%), Gaps = 34/218 (15%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYC-PCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+G+DEAG+GPVLGPMV + P + ADSK L E+REEL +L+ D +
Sbjct: 3 IGVDEAGKGPVLGPMVAAAVRADPDALPD-----GIADSKRLAPERREELAAELRECDDI 57
Query: 76 GWAVDIIDPRELSAKMLNKNKINLN---EISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
V ++P + + N + + E + D A V + G + +
Sbjct: 58 SVGVAFVEPETIDDPETDMNLLTVRAQVEAAADVAADADELVCDAGDVSESRF------G 111
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF 192
+ + L++ S++ +AD + +V ASIVAKV RDR + E + +
Sbjct: 112 RRVREGLAEAGVSVEVRAQHRADDEHAIVGAASIVAKVERDRRV------EAIADEYGEV 165
Query: 193 GSGYPGD-----------HKHIIFGFPSLVRFSWGTCT 219
GSGYP D H I P R SW TC
Sbjct: 166 GSGYPSDGTTREFLREYVRDHGI--LPDCARKSWSTCA 201
>gi|389860356|ref|YP_006362595.1| ribonuclease HII [Thermogladius cellulolyticus 1633]
gi|388525259|gb|AFK50457.1| ribonuclease HII [Thermogladius cellulolyticus 1633]
Length = 231
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 96/214 (44%), Gaps = 26/214 (12%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
++GIDEAGRGP++G MV + S L L DSKTL R + +
Sbjct: 4 LVIGIDEAGRGPLIGDMVVTGVAVSSSVISRLEQLGVRDSKTLSPGARSKARAAVLSEVP 63
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSA--IGLITRVLNIGILLTEVYLDTVGDA 132
V + + E+ +K NLN + ++A + L+ R L E+Y+D + A
Sbjct: 64 VSFVSIYVHAAEIDSK-------NLNTATLEAAKRVLLLVRELAWRGGEVEIYVDEIKGA 116
Query: 133 EKYQAKLSQRFPSIK---FVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH 189
E + S K FV+ +ADS YP VS ASI+AK RD ++ + +
Sbjct: 117 ESKLRRFSMELYGDKLVVFVMEPEADSKYPAVSLASIIAKTLRDESI------QPGRVLF 170
Query: 190 RNFGSGYPGDHKHI--------IFGFPSLVRFSW 215
++GSGY D K + + P +VR W
Sbjct: 171 GDYGSGYSADPKTVKWVTEYSKVSPPPLIVRRKW 204
>gi|448320192|ref|ZP_21509680.1| ribonuclease HII [Natronococcus amylolyticus DSM 10524]
gi|445606598|gb|ELY60502.1| ribonuclease HII [Natronococcus amylolyticus DSM 10524]
Length = 222
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 62/228 (27%), Positives = 101/228 (44%), Gaps = 39/228 (17%)
Query: 18 GIDEAGRGPVLGPMVYGCLYC--PCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
G+DEAG+GP LG M ++ P + + ADSK L E+REEL L+ +D +
Sbjct: 4 GVDEAGKGPALGSMFAAAVHVADPDALPE-----GIADSKRLVPERREELAATLREDDRI 58
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEI---SHDSAIGLITRVLNIGILLTEVYL----DT 128
V E++ +++ + ++N + +H AI + +++ + L DT
Sbjct: 59 AVGV-----SEITPSLIDNPETDMNSLAVRAHAEAIEEMLEAVDVSADSSAPGLCDACDT 113
Query: 129 VGDAEKYQAKLSQRF-PSIKFVVSKK--ADSLYPVVSGASIVAKVTRDRTLRGWIFEETA 185
DA+++ +++ P + + + AD P+V AS+VAKV RD ++ E
Sbjct: 114 --DADRFARRVADACEPEYELEIEAEHGADDQDPIVGAASVVAKVERDASMAALADE--- 168
Query: 186 ENMHRNFGSGYPGDHKHIIF---------GFPSLVRFSWGTCTSHFKD 224
+ GSGYP D F P R SW TC D
Sbjct: 169 ---YGPVGSGYPSDPTTRAFLESYVADHDSLPPFARESWSTCADVLAD 213
>gi|325969836|ref|YP_004246028.1| ribonuclease HII [Vulcanisaeta moutnovskia 768-28]
gi|323709039|gb|ADY02526.1| ribonuclease HII [Vulcanisaeta moutnovskia 768-28]
Length = 198
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 64/189 (33%), Positives = 94/189 (49%), Gaps = 32/189 (16%)
Query: 46 LATLNFADSKTLKEEKREELFEDLKVNDSVGWAVD--IIDPRELSAKMLNKNKINLNEIS 103
L + DSK L E R LF LK S+ +D II+P + + +N N +N+ E+
Sbjct: 14 LREIGVKDSKELSPESRSRLFIILK---SILNYIDYEIIEPVIID-RYVNMNALNILEV- 68
Query: 104 HDSAIGLITRVLNIGILLTEVYLDTVG-DAEKYQAKLSQRFP-SIKFVVSKKADSLYPVV 161
+ I LI + L+ I + +Y+D+ E+++ + +R ++ + KAD L PVV
Sbjct: 69 -EVTIKLINKALS-NIQVHTIYIDSPDPKPERFRDMIMERVGGNVNVIAMNKADKLIPVV 126
Query: 162 SGASIVAKVTRDRTLRGWIFEETAENMHR---NFGSGYPGDHKHIIF---------GFPS 209
S ASIVAKV RD + E +HR +FGSGYP D + I F P
Sbjct: 127 SAASIVAKVVRDSII---------ERLHREFGDFGSGYPSDPRTIAFLKRWIEKHGDLPP 177
Query: 210 LVRFSWGTC 218
+VR SW T
Sbjct: 178 IVRRSWSTA 186
>gi|292656107|ref|YP_003536004.1| ribonuclease H II [Haloferax volcanii DS2]
gi|291372875|gb|ADE05102.1| ribonuclease H II [Haloferax volcanii DS2]
Length = 215
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 63/218 (28%), Positives = 95/218 (43%), Gaps = 34/218 (15%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYC-PCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+G+DEAG+GPVLGPMV + P + ADSK L E+REEL +L+ D +
Sbjct: 3 IGVDEAGKGPVLGPMVAAAVRGDPDALPD-----GIADSKRLAPERREELAAELRERDDI 57
Query: 76 GWAVDIIDPRELSAKMLNKNKINLN---EISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
V ++P + + N + + E + + A+ V + G + +
Sbjct: 58 SVGVAFVEPETIDDPETDMNLLTVRAQVEAAAEVAVDADELVCDAGDVSESRF------G 111
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF 192
+ + L++ S+ +AD + +V ASIVAKV RDR + E + +
Sbjct: 112 RRVREGLAEAGVSVAVRAQHRADDEHAIVGAASIVAKVERDRRV------EAIADEYGEV 165
Query: 193 GSGYPGD-----------HKHIIFGFPSLVRFSWGTCT 219
GSGYP D H I P R SW TC
Sbjct: 166 GSGYPSDGTTREFLREYVRDHGI--LPDCARKSWSTCA 201
>gi|448397461|ref|ZP_21569494.1| ribonuclease HII [Haloterrigena limicola JCM 13563]
gi|445672560|gb|ELZ25131.1| ribonuclease HII [Haloterrigena limicola JCM 13563]
Length = 223
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 61/216 (28%), Positives = 92/216 (42%), Gaps = 24/216 (11%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLN-FADSKTLKEEKREELFEDLKVNDSV 75
G+DEAG+GP LG M +Y + T + DSK L E+REEL L+ +D +
Sbjct: 3 FGVDEAGKGPALGSMFAAAVY----LEDTDGLPDGIRDSKRLTSERREELAATLRDDDRI 58
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISH--DSAIGLITRVLNIGILLTEVYLDTVGDAE 133
V I P + + N + + + + A+ + R + ++ + DAE
Sbjct: 59 AIGVAEITPARIDDPQTDMNSLAVTAHAEAIEDAVADLERSEDSSEPVSGLCDACDTDAE 118
Query: 134 KYQAKLSQRFPSIKFVVSKK--ADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRN 191
++ ++S + V + AD P+V ASI+AKV RD + E +
Sbjct: 119 RFARRVSDTCSLERLAVDARHGADDDSPLVGAASIIAKVERDAHIATLAAE------YGP 172
Query: 192 FGSGYPGDHKHIIF---------GFPSLVRFSWGTC 218
GSGYPGD F P R SW TC
Sbjct: 173 IGSGYPGDSTTRAFLTSYVDAHGELPPFARESWSTC 208
>gi|424814493|ref|ZP_18239671.1| ribonuclease H, archaeal HII subfamily [Candidatus Nanosalina sp.
J07AB43]
gi|339758109|gb|EGQ43366.1| ribonuclease H, archaeal HII subfamily [Candidatus Nanosalina sp.
J07AB43]
Length = 219
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 69/223 (30%), Positives = 98/223 (43%), Gaps = 41/223 (18%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
++GIDEAGRGPV+G M G L + DSK L + KR+ ++ D++
Sbjct: 3 VLGIDEAGRGPVIGSMFIGGFVTDEKDLGRLEDIGVKDSKKLSDNKRD------RIRDNL 56
Query: 76 GWAVDIIDPRELSAKMLNK--NKINLNEISHDSAIGLITRVLNIGILLTEVYLD-TVGDA 132
G A D I E +A ++ + +N+I I RV++ +V +D DA
Sbjct: 57 GSAGDSI-VEEFTASSIDSMMESMTINQIE----IKGFARVID-QTDPDKVIMDLPEPDA 110
Query: 133 EKYQAKLSQRFPS----IKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENM 188
E++ K+ + S ++F AD +PVVS ASIVAK R E E +
Sbjct: 111 EEFIGKIKKSMNSDNTDMEFKAEHGADDSFPVVSAASIVAKSAR---------ESHVEGL 161
Query: 189 HRNFG----SGYPGDHKHIIF---------GFPSLVRFSWGTC 218
H +G SGYP D I F P R SW T
Sbjct: 162 HSKYGYDFASGYPHDKPTITFLERYLDQEGDLPPETRRSWSTA 204
>gi|149183639|ref|ZP_01862056.1| ribonuclease HII [Bacillus sp. SG-1]
gi|148848656|gb|EDL62889.1| ribonuclease HII [Bacillus sp. SG-1]
Length = 258
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 89/181 (49%), Gaps = 26/181 (14%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
I GIDE GRGP+ GP+V + P + L DSK L E++RE ++ + ++
Sbjct: 74 LIAGIDEVGRGPLAGPVVAAAVILPADF----CLLGINDSKKLSEKQREAFYQYI-TEEA 128
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
+ W+ II P+E+ +++N+ + S + ++T + + + + +D +
Sbjct: 129 IAWSTGIISPQEI-------DELNIYQASKKA---MVTALNTLNVKPDHLLIDAM----- 173
Query: 135 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGS 194
+L +P + + K D+ ++ ASIVAKVTRDR + + + + +N G
Sbjct: 174 ---ELGSPYPEMSLI---KGDARSISIAAASIVAKVTRDRMMEEYSQVYSGYGLEKNMGY 227
Query: 195 G 195
G
Sbjct: 228 G 228
>gi|419704823|ref|ZP_14232367.1| ribonuclease [Mycoplasma canis UF33]
gi|384392811|gb|EIE39264.1| ribonuclease [Mycoplasma canis UF33]
Length = 200
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 80/164 (48%), Gaps = 26/164 (15%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+ G DEAGRGPV GP+V C+ P Y + DSK L E+KRE LFE++K N ++
Sbjct: 14 VAGCDEAGRGPVCGPLVAACVILPLDYANEM----IDDSKKLSEKKREILFEEIKQN-AI 68
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
+ ++I R + ++IN +S IG+ + + I V D
Sbjct: 69 DYYIEI---RSV-------DEINRTNPKKESQIGMANAIKKLKIKPEYVLTDF------- 111
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW 179
K+ P + K D L ++ ASI+AKVTRDR L+ +
Sbjct: 112 -EKIDIEIPQTNLI---KGDQLSLNIAAASILAKVTRDRILKEY 151
>gi|20093626|ref|NP_613473.1| ribonuclease HII [Methanopyrus kandleri AV19]
gi|74561281|sp|Q8TYV5.1|RNH2_METKA RecName: Full=Ribonuclease HII; Short=RNase HII
gi|19886492|gb|AAM01403.1| Ribonuclease HII [Methanopyrus kandleri AV19]
Length = 210
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 61/189 (32%), Positives = 88/189 (46%), Gaps = 23/189 (12%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+MGIDEAGRGPV GPMV + P ++ L L DSK L R L L ++ +
Sbjct: 4 VMGIDEAGRGPVFGPMVVAGVLAP---KRELG-LGARDSKELTRSARRRLIRALMSDERL 59
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
+ I+ P E+ + + K + ++ L+ R + EV LD G+
Sbjct: 60 RVDLRIVWPWEIDEEGVAKAEF-------EAIRELVRRAMP-----DEVILDKPGNYSPE 107
Query: 136 QAKLSQRFPS-IKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGS 194
+ + P I + ++AD+ Y VVS ASIVAK RD WI E + GS
Sbjct: 108 RLRRELDLPEGINLIAEERADAKYEVVSAASIVAKTYRD-----WIV-RLLELEYGEVGS 161
Query: 195 GYPGDHKHI 203
GYP D + +
Sbjct: 162 GYPSDPRTV 170
>gi|433422650|ref|ZP_20406055.1| ribonuclease HII [Haloferax sp. BAB2207]
gi|432198565|gb|ELK54835.1| ribonuclease HII [Haloferax sp. BAB2207]
Length = 215
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 64/218 (29%), Positives = 94/218 (43%), Gaps = 34/218 (15%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYC-PCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+G+DEAG+GPVLGPMV + P + ADSK L E+REEL +L+ D +
Sbjct: 3 IGVDEAGKGPVLGPMVAAAVRADPDALPD-----GIADSKRLAPERREELAAELRECDDI 57
Query: 76 GWAVDIIDPRELSAKMLNKNKINLN---EISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
V ++P + + N + + E + D A V + G + +
Sbjct: 58 SVGVAFVEPETIDDPETDMNLLTVRAQVEAAADVAADADELVCDAGDVSESRF------G 111
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF 192
+ + L++ S+ +AD + +V ASIVAKV RDR + E + +
Sbjct: 112 RRVREGLAEAGVSVAVRAQHRADDEHAIVGAASIVAKVERDRRV------EAIADEYGEV 165
Query: 193 GSGYPGD-----------HKHIIFGFPSLVRFSWGTCT 219
GSGYP D H I P R SW TC
Sbjct: 166 GSGYPSDGTTREFLREYVRDHGI--LPDCARKSWSTCA 201
>gi|126466172|ref|YP_001041281.1| RNase HII [Staphylothermus marinus F1]
gi|126014995|gb|ABN70373.1| RNase HII [Staphylothermus marinus F1]
Length = 244
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 105/217 (48%), Gaps = 25/217 (11%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFED-LKVNDSV 75
+GIDEAGRGP++G +V L + L ++ DSK L R + + LK+ D+V
Sbjct: 10 IGIDEAGRGPLIGDLVIAVLMINRDKIKNLISIGVRDSKQLTRHTRLIMAKKILKLADNV 69
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
++ I P + + N + A+ ++++++N +Y+D + + Y
Sbjct: 70 --SIIYISPEMIDS----YNINKIIAEKIIIALRMLSQIIN-HYRTVSIYIDEIKGYKNY 122
Query: 136 -QAKLSQRFPSI-KFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG 193
LS+ +I ++V+ AD YPVVS ASI+AK RD+ + + + ++ NFG
Sbjct: 123 ILTNLSKYINNIEEYVMEPNADQKYPVVSAASILAKTIRDKNI------DFLKKIYGNFG 176
Query: 194 SGYPGDHKHIIFGF---------PSLVRFSWGTCTSH 221
SGYP D I + P ++R +W T +
Sbjct: 177 SGYPSDKITIKWLTKTYNEENEPPLIIRRTWSTLRKY 213
>gi|355571207|ref|ZP_09042459.1| ribonuclease HII [Methanolinea tarda NOBI-1]
gi|354825595|gb|EHF09817.1| ribonuclease HII [Methanolinea tarda NOBI-1]
Length = 211
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 67/217 (30%), Positives = 101/217 (46%), Gaps = 39/217 (17%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+ G+DEAG+G VLGP+V + C ++ LA L DSK L ++RE L +++ + V
Sbjct: 2 LCGVDEAGKGAVLGPLVVAAVG--CGKKEDLADLGVRDSKELSPQRREALAGEIRRSFPV 59
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG-DAEK 134
AV + P E+ + + N L SH + I ++ + + +D +A +
Sbjct: 60 --AVLSLSPAEIDGRGIGLN--TLIARSHAAVISMLAPSVAV--------VDACDVNASR 107
Query: 135 YQAKLSQRFPSI--KFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHR-- 190
Y ++ F S+ + V AD +P VS ASIVAKV RD + +H
Sbjct: 108 YGGMVTG-FLSVPCRVVSCHHADRQHPAVSAASIVAKVERDSMI---------HRLHDEW 157
Query: 191 -NFGSGYPGDHKHIIF---------GFPSLVRFSWGT 217
+FGSGYP D I F P + R SW T
Sbjct: 158 GSFGSGYPSDPVTIRFLERYLEEKGEIPPIARKSWET 194
>gi|222480377|ref|YP_002566614.1| ribonuclease HII [Halorubrum lacusprofundi ATCC 49239]
gi|222453279|gb|ACM57544.1| ribonuclease HII [Halorubrum lacusprofundi ATCC 49239]
Length = 234
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 59/230 (25%), Positives = 97/230 (42%), Gaps = 41/230 (17%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVG 76
+G+DEAG+GPVLGPMV + + DSK + +RE + +++ D+V
Sbjct: 3 LGVDEAGKGPVLGPMVAAAVLA----DPVALPADVDDSKRIAPSRRESIDAEIRATDAVA 58
Query: 77 WAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLN--IGILLTEVYLDTVGDA-E 133
V ++P E +++ ++N ++ + L+ + + L E + V DA +
Sbjct: 59 VGVAFVEPAE-----IDRPDTDMNTLTVRGQARAVRAALHGVVAVDLDE-PIRVVADAGD 112
Query: 134 KYQAKLSQRF----------------PSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLR 177
+A+ ++R P + + AD P+V AS+VAKV RD +
Sbjct: 113 TSEARFARRLGESVADPDSDTTDTEHPEVDVSAAHGADEDDPMVGAASVVAKVARDERMA 172
Query: 178 GWIFEETAENMHRNFGSGYPGDHKHIIF---------GFPSLVRFSWGTC 218
+ A + GSGYP D F P R SW TC
Sbjct: 173 DIDADYPA---YDGLGSGYPSDPATRNFLRAYVNDHGNVPGCARRSWATC 219
>gi|257052068|ref|YP_003129901.1| ribonuclease HII [Halorhabdus utahensis DSM 12940]
gi|256690831|gb|ACV11168.1| ribonuclease HII [Halorhabdus utahensis DSM 12940]
Length = 234
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 64/213 (30%), Positives = 99/213 (46%), Gaps = 34/213 (15%)
Query: 18 GIDEAGRGPVLGPMVYGCLYC-PCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVG 76
G+DEAG+GPVLG M C+ P + DSK L E+REEL ++
Sbjct: 26 GVDEAGKGPVLGSMFAACVVADPADLPD-----DVDDSKDLSAERREELATVIR---DRA 77
Query: 77 WAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGD--AEK 134
AV + E+ ++ + ++N ++ + + V + G+ YLD GD A +
Sbjct: 78 HAVAV---SEIPVARIDDTETDMNTLTVVAHAEALEPVASDGLA---TYLD-AGDTNAVR 130
Query: 135 YQAKLSQRFPS-IKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG 193
++ +++ R + + AD+ YP+V ASI+AKV RD + E AE + + G
Sbjct: 131 FERRVADRIEADLDLRAEHGADAAYPIVGAASIIAKVERD----AHVAELAAE--YGDLG 184
Query: 194 SGYPGDHKHIIF---------GFPSLVRFSWGT 217
SGYPGD F P+ R SW T
Sbjct: 185 SGYPGDSTTRDFLEDYIAEHGELPACARESWQT 217
>gi|448679235|ref|ZP_21690072.1| ribonuclease HII [Haloarcula argentinensis DSM 12282]
gi|445771333|gb|EMA22390.1| ribonuclease HII [Haloarcula argentinensis DSM 12282]
Length = 211
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 97/213 (45%), Gaps = 32/213 (15%)
Query: 18 GIDEAGRGPVLGPMVYGCLYC-PCSYQQTLATLNFADSKTLKEEKREELFEDLKVN-DSV 75
G+DEAG+GPVLG M + P + DSK +K E+RE L E+++ + D+V
Sbjct: 4 GVDEAGKGPVLGSMFAAAVRADPVTLPD-----GVGDSKDIKPERRERLAEEIRESADAV 58
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
G A E+ + ++ ++ ++N ++ D+ ++ V + T DT DA ++
Sbjct: 59 GVA-------EVPVERIDADETDMNTLTVDAQATALSTVARDNLSGTVDAGDT--DATRF 109
Query: 136 QAKLSQRFPS-IKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGS 194
+++ + + AD VV ASI+AKV RD + E + + GS
Sbjct: 110 GRRVADAVDADVTVTAEHGADETDTVVGAASIIAKVARDAHVAELAVE------YGDVGS 163
Query: 195 GYPGDHKHIIF---------GFPSLVRFSWGTC 218
GYP D F P+ R SW TC
Sbjct: 164 GYPSDPTTRAFLADYVDRHGELPACARRSWSTC 196
>gi|448738065|ref|ZP_21720096.1| ribonuclease HII [Halococcus thailandensis JCM 13552]
gi|445802649|gb|EMA52953.1| ribonuclease HII [Halococcus thailandensis JCM 13552]
Length = 208
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 66/228 (28%), Positives = 99/228 (43%), Gaps = 36/228 (15%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+ G+DEAGRGPVL G L+ C T DSK L +RE L +++ ++ V
Sbjct: 1 MFGVDEAGRGPVL-----GSLFVACVSADTALPDGIDDSKRLTPARREALAAEIRADERV 55
Query: 76 GWAVDIIDPRELSAKMLNKNKIN-LNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
AV E++A ++ ++N L + AI T + G++ DT DA +
Sbjct: 56 TIAV-----SEITASEIDDGRLNALTVAAMADAIDRATATGDSGVVDA---CDT--DAAR 105
Query: 135 YQAKL-SQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG 193
+ ++ ++ ++ AD + V ASIVAKV RD + E H G
Sbjct: 106 FGRRVRAETTTDVELAAEHGADESHDHVGAASIVAKVARDEHVADLAAE------HGAIG 159
Query: 194 SGYPGDHKHIIF---------GFPSLVRFSWGTCTSHFKDIVEVLWES 232
SGYPGD F P R SW T +D++E +S
Sbjct: 160 SGYPGDSSTRKFLREYVREHGDLPPFARESWKTS----RDVLEAADQS 203
>gi|281205710|gb|EFA79899.1| hypothetical protein PPL_06719 [Polysphondylium pallidum PN500]
Length = 589
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 66/247 (26%), Positives = 107/247 (43%), Gaps = 53/247 (21%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVG 76
+G+DEAG+G VLGP+V + + +Q L DSK L ++REEL++ +K ++
Sbjct: 267 IGVDEAGKGAVLGPLVIAAVSLDSAAEQYLKAAGVKDSKKLSAQRREELYDIIK-ERALY 325
Query: 77 WAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLN-----------------IGI 119
+ I++ R++ + + LN+I D + LI R LN +
Sbjct: 326 TTIYILEARDID---IRRKTQTLNKIESDIFLELIQRSLNHLKSNPQEFIEEVEENNNIV 382
Query: 120 LLTEVYLDTVGDAEKYQAKLSQ--------------RFPSIKFVV--SKKADSLYPVVSG 163
+ E + + +KY+ +L FP+ + V +ADS Y
Sbjct: 383 VGGEQFNNNSNKPKKYKIQLDSLESNTGKFSLPFRDAFPAPEHTVICENQADSKYVSTGA 442
Query: 164 ASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDHKHIIF----------GFPSLVRF 213
ASI+AKV RDR + ++++ G GYP D + F P VR
Sbjct: 443 ASIIAKVERDRAIAAL-----EKSVNTPVGCGYPSDATTLTFIESYYQRNGNDHPD-VRL 496
Query: 214 SWGTCTS 220
SW T T+
Sbjct: 497 SWKTLTN 503
>gi|448384513|ref|ZP_21563351.1| ribonuclease HII [Haloterrigena thermotolerans DSM 11522]
gi|445658579|gb|ELZ11397.1| ribonuclease HII [Haloterrigena thermotolerans DSM 11522]
Length = 223
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 64/217 (29%), Positives = 92/217 (42%), Gaps = 26/217 (11%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVG 76
G+DEAG+GP LG M ++ C L DSK L E+REEL L+ +D +
Sbjct: 3 FGVDEAGKGPALGSMFAAAVH--CDAPDDLPD-GIRDSKRLSPERREELAATLRGDDRIA 59
Query: 77 WAVDIIDPRELSAKMLNKNKINLNEISHDSAI-GLI---TRVLNIGILLTEVYLDTVGDA 132
V I P + + N + + +H +AI G + RV + + + DA
Sbjct: 60 IGVAEITPARIDDPETDMNSLAV--AAHATAIEGALADRARVASADEQFSGLCDACDTDA 117
Query: 133 EKYQAKLSQRFPSIKFVVSKK--ADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHR 190
+++ +++ V + AD P+V ASIVAKV RD + E +
Sbjct: 118 DRFARRVADACSLEALTVDARHGADDESPLVGAASIVAKVERDSHVAALADE------YG 171
Query: 191 NFGSGYPGDHKHIIF---------GFPSLVRFSWGTC 218
GSGYPGD F P R SW TC
Sbjct: 172 PIGSGYPGDSTTREFLADYVDEHGDLPPFARASWSTC 208
>gi|399577795|ref|ZP_10771547.1| rnase hii [Halogranum salarium B-1]
gi|399237237|gb|EJN58169.1| rnase hii [Halogranum salarium B-1]
Length = 219
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 96/220 (43%), Gaps = 35/220 (15%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVG 76
+G DEAG+GPVLGPMV + TL + DSK + +REE+ L+ +D V
Sbjct: 4 VGADEAGKGPVLGPMVAAAVRT----DPTLLPHDIDDSKQVAPARREEIATALRTHDDVD 59
Query: 77 WAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLI--------TRVLNIGILLTEVYLDT 128
V +I S ++ + ++N ++ + + + T V++ G + E +
Sbjct: 60 VGVGVI-----STDRIDDPETDMNSLTVAAQVEAVAAVACDGDTVVVDAGDVSEERF--- 111
Query: 129 VGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENM 188
+ + +++ I V AD + +V ASIVAKV RD + E A
Sbjct: 112 ---GRRVRDGVAEIGVDIDVVSEHGADETHGIVGAASIVAKVERDSMVEAIAAEYDA--- 165
Query: 189 HRNFGSGYPGDHKHIIF---------GFPSLVRFSWGTCT 219
+ + GSGYP D K F P R SW TC
Sbjct: 166 YGDVGSGYPSDPKTRRFLKAYVADHGDVPDCARRSWSTCA 205
>gi|384938155|ref|ZP_10029847.1| ribonuclease [Mycoplasma canis UF31]
gi|384393116|gb|EIE39567.1| ribonuclease [Mycoplasma canis UF31]
Length = 200
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 80/164 (48%), Gaps = 26/164 (15%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+ G DEAGRGPV GP+V C+ P Y + DSK L E+KRE LFE++K N ++
Sbjct: 14 VAGCDEAGRGPVCGPLVAACVILPLDYVNEM----IDDSKKLSEKKREILFEEIKQN-AI 68
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
+ ++I R + ++IN +S IG+ + + I V D
Sbjct: 69 DYYIEI---RSV-------DEINRTNPKKESQIGMANAIKKLKIKPEYVLTDF------- 111
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW 179
K+ P + K D L ++ ASI+AKVTRDR L+ +
Sbjct: 112 -EKIDIEIPQTNLI---KGDQLSLNIAAASILAKVTRDRILKEY 151
>gi|393795311|ref|ZP_10378675.1| ribonuclease HII [Candidatus Nitrosoarchaeum limnia BG20]
Length = 205
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 64/210 (30%), Positives = 99/210 (47%), Gaps = 26/210 (12%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I G+D+AGRG +LGP+V + S L L DSK L + REEL++ + ++
Sbjct: 3 ICGVDDAGRGSMLGPLVIAGVSLKKSDVSKLKLLGVKDSKQLTPKLREELYKKI-ISLVD 61
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG-DAEK 134
+ V I P+ + A + ++++H A + +L + Y+D+ + +
Sbjct: 62 NYYVAKISPKLIDA------SVKKHDLNHLEAKYMAKVILKLN--PDTSYVDSCDVNPNR 113
Query: 135 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGS 194
+ ++S+ + K ADS + VVS ASI+AKVTRDR E + + GS
Sbjct: 114 FGKEISKLSNNKKIRSYHHADSRFIVVSAASIIAKVTRDR-------EIMKLRKNHDLGS 166
Query: 195 GYPGDHKHIIFG---------FPSLVRFSW 215
GYP D K I F P VR SW
Sbjct: 167 GYPSDSKTIDFVKLYYKTNQILPVFVRKSW 196
>gi|340345418|ref|ZP_08668550.1| Ribonuclease [Candidatus Nitrosoarchaeum koreensis MY1]
gi|339520559|gb|EGP94282.1| Ribonuclease [Candidatus Nitrosoarchaeum koreensis MY1]
Length = 215
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 66/212 (31%), Positives = 101/212 (47%), Gaps = 30/212 (14%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I G+D+AGRG +LGP+V + L+ L DSK L + REEL++ + +
Sbjct: 10 ICGVDDAGRGSMLGPLVIAGIIISKKDIPKLSKLGVKDSKQLTPKLREELYKKI-IALVD 68
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG-DAEK 134
+ V I P+ + A + K NLN + +I++ LN Y+D+ + ++
Sbjct: 69 NYYVTKISPKIIDASV---TKHNLNHLEAKYMAKVISK-LNPD----TSYVDSCDVNPKR 120
Query: 135 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF-- 192
+ ++++ K ADS + VVS ASI+AKVTRDR + + +N+
Sbjct: 121 FGKEIAKLSKHKKIRSYHHADSRFIVVSAASIIAKVTRDRAIL---------KLRKNYDL 171
Query: 193 GSGYPGDHKHIIF---------GFPSLVRFSW 215
GSGYP D K I F P VR SW
Sbjct: 172 GSGYPSDSKTIDFVASYYKINQVLPIFVRKSW 203
>gi|257387378|ref|YP_003177151.1| ribonuclease HII [Halomicrobium mukohataei DSM 12286]
gi|257169685|gb|ACV47444.1| ribonuclease HII [Halomicrobium mukohataei DSM 12286]
Length = 210
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 62/213 (29%), Positives = 94/213 (44%), Gaps = 31/213 (14%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYC-PCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
G+DEAG+GPVLG M + C P DSK + +E+RE L E ++ +V
Sbjct: 3 FGVDEAGKGPVLGSMFAAAVRCDPGDLPD-----GVGDSKGIPDERRERLAEAIRSVAAV 57
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
G A E++ + ++ + ++N ++ + ++ V G+ DT DAE++
Sbjct: 58 GLA-------EITPERIDDPETDMNTLTVAAHAEALSAVATDGLSGLVDAGDT--DAERF 108
Query: 136 QAKLSQRFPS-IKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGS 194
+++ R S I + AD P+V ASIVAK R+ + E A GS
Sbjct: 109 GRRVADRVDSEIDLGSAHGADETDPLVGAASIVAKSAREAHVAALADEFGA------VGS 162
Query: 195 GYPGDHKHIIF---------GFPSLVRFSWGTC 218
GYP D F P R SW TC
Sbjct: 163 GYPSDPATREFLKRYVDEHGALPDCARTSWSTC 195
>gi|419704176|ref|ZP_14231726.1| ribonuclease [Mycoplasma canis PG 14]
gi|384392964|gb|EIE39416.1| ribonuclease [Mycoplasma canis PG 14]
Length = 200
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 80/164 (48%), Gaps = 26/164 (15%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+ G DEAGRGPV GP+V C+ P Y + DSK L E+KRE LFE++K N ++
Sbjct: 14 VAGCDEAGRGPVCGPLVAACVILPLDYANEM----IDDSKKLSEKKREILFEEIKQN-AI 68
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
+ ++I R + ++IN +S IG+ + + I V D
Sbjct: 69 DYYIEI---RSV-------DEINKTNPKKESQIGMANAIKKLKIKPEHVLTDF------- 111
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW 179
K+ P + K D L ++ ASI+AKVTRD+ L+ +
Sbjct: 112 -EKIDIEIPQTNLI---KGDQLSLNIAAASILAKVTRDKILQEY 151
>gi|448689619|ref|ZP_21695203.1| ribonuclease HII [Haloarcula japonica DSM 6131]
gi|445777890|gb|EMA28850.1| ribonuclease HII [Haloarcula japonica DSM 6131]
Length = 211
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 95/213 (44%), Gaps = 30/213 (14%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL-KVNDSV 75
G+DEAG+GPVLG M DSK +K E+RE L E++ K D+V
Sbjct: 3 FGVDEAGKGPVLGSM----FAAAVRADPAALPNGVGDSKDIKPERRERLAEEIRKSADAV 58
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
G A E+ + ++ + ++N ++ D ++ V G+ T DT DA ++
Sbjct: 59 GVA-------EIPVERIDADGTDMNTLTVDGQAEALSAVARDGLSGTVDAGDT--DAARF 109
Query: 136 QAKLSQRFPS-IKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGS 194
+++ + + AD P+V ASI+AKV RD + E AE + + GS
Sbjct: 110 GRRVADAVDADVTVTAEHGADETDPLVGAASIIAKVARDVHV-----TELAEE-YGDVGS 163
Query: 195 GYPGDHKHIIF---------GFPSLVRFSWGTC 218
GYP D F P+ R SW TC
Sbjct: 164 GYPSDPTTRTFLADYVDSHGELPACARRSWSTC 196
>gi|344210764|ref|YP_004795084.1| RNAase HII [Haloarcula hispanica ATCC 33960]
gi|343782119|gb|AEM56096.1| RNAase HII [Haloarcula hispanica ATCC 33960]
Length = 211
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 94/213 (44%), Gaps = 30/213 (14%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVN-DSV 75
G+DEAG+GPVLG M DSK ++ E+RE L D++ + D+V
Sbjct: 3 FGVDEAGKGPVLGSM----FAAAVRADPAALPDGVGDSKDIRPERRERLAGDIRESADAV 58
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
G A E+ + ++ ++ ++N ++ D ++ V G+ T DT DA ++
Sbjct: 59 GVA-------EIPVERIDADRTDMNTLTVDGQAEALSAVARDGLSGTVDAGDT--DAARF 109
Query: 136 QAKLSQRFPS-IKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGS 194
+++ + + AD P+V ASIVAKV RD + E + + GS
Sbjct: 110 GRRVADAVDTDVAVTAEHGADETDPLVGAASIVAKVARDAHVADLAEE------YGDVGS 163
Query: 195 GYPGDHKHIIF---------GFPSLVRFSWGTC 218
GYP D F P+ R SW TC
Sbjct: 164 GYPSDPTTRAFLADYVDRHGELPACARRSWSTC 196
>gi|409729992|ref|ZP_11271603.1| ribonuclease HII [Halococcus hamelinensis 100A6]
gi|448722297|ref|ZP_21704835.1| ribonuclease HII [Halococcus hamelinensis 100A6]
gi|445790008|gb|EMA40681.1| ribonuclease HII [Halococcus hamelinensis 100A6]
Length = 212
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 98/227 (43%), Gaps = 33/227 (14%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYC-PCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
G+DEAGRGPVLG + C+ P DSK L +RE L +DL +D V
Sbjct: 3 FGVDEAGRGPVLGSLFVACVRADPADLPA-----GIDDSKRLSPARREALVDDLHGDDRV 57
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
AV E++A ++ + ++N ++ +A I V G+ DT DA ++
Sbjct: 58 STAV-----VEVTASEIDDPETDINALTITAAAEAIDDVAEDGLTGIVDACDT--DAARF 110
Query: 136 QAKLSQRFPS-IKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGS 194
++ + ++ AD + +V ASIVAKV RD + E + H GS
Sbjct: 111 GRRVVVATETDVEVTAEHGADENHDLVGAASIVAKVARDSHI------ERLADEHGPLGS 164
Query: 195 GYPGDHKHIIF---------GFPSLVRFSWGTCTSHFKDIVEVLWES 232
GYP D F P R SW T +D+++ +S
Sbjct: 165 GYPSDPNTREFLREYVREHGELPPFARASWKTS----RDVLDAAAQS 207
>gi|448547399|ref|ZP_21626877.1| ribonuclease HII [Haloferax sp. ATCC BAA-645]
gi|445716410|gb|ELZ68154.1| ribonuclease HII [Haloferax sp. ATCC BAA-645]
Length = 215
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 96/220 (43%), Gaps = 38/220 (17%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVG 76
+G+DEAG+GPVLGPMV + + ADSK L E+REEL +L+ D +
Sbjct: 3 IGVDEAGKGPVLGPMVAAAVRG----EPDALPDGIADSKRLSPERREELATELRERDDIS 58
Query: 77 WAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGD----- 131
V ++P ++ + ++N ++ + + V E+ D GD
Sbjct: 59 VGVAFVEP-----ATIDDPETDMNLLTVRAQVDAAAAVAA---DADELVCDA-GDVSESR 109
Query: 132 -AEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHR 190
+ + L++ ++ +AD + +V ASIVAKV RDR + E + +
Sbjct: 110 FGRRVREGLAEAGVPVEVRAQHRADDEHAIVGAASIVAKVERDRRV------EAIADEYG 163
Query: 191 NFGSGYPGD-----------HKHIIFGFPSLVRFSWGTCT 219
GSGYP D +H I P R SW TC
Sbjct: 164 EVGSGYPSDGTTREFLREYVREHGI--LPDCARKSWSTCA 201
>gi|171184725|ref|YP_001793644.1| ribonuclease HII [Pyrobaculum neutrophilum V24Sta]
gi|254807995|sp|B1YB67.1|RNH2_THENV RecName: Full=Ribonuclease HII; Short=RNase HII
gi|170933937|gb|ACB39198.1| ribonuclease HII [Pyrobaculum neutrophilum V24Sta]
Length = 198
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 66/206 (32%), Positives = 100/206 (48%), Gaps = 26/206 (12%)
Query: 18 GIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFE-DLKVNDSVG 76
G+DEAGRGPV+GPMV + LA L DSK L E+RE L++ L+ D V
Sbjct: 7 GVDEAGRGPVVGPMVIAVV---VGDGGVLARLGVRDSKRLSPERRERLYQLILEAADCVN 63
Query: 77 WAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQ 136
+ V ++P + + + +N E+ + + + I + +VY D + +
Sbjct: 64 YVV--VEPAVVDTYVW-RGLLNALELDYTAKL--------IELCPADVYYVDSPDVDPRR 112
Query: 137 AKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGY 196
+ F + + VV+ P V+ ASIVAKV RDR L + +E +FGSGY
Sbjct: 113 YGSALEFITGRRVVAMHKGESVPQVAAASIVAKVVRDR-LVALLKKEVG-----DFGSGY 166
Query: 197 PGDHKH---IIFGF--PSLVRFSWGT 217
P D + + +G P VR+SW T
Sbjct: 167 PSDPRTREWLKWGRLPPECVRWSWRT 192
>gi|386002343|ref|YP_005920642.1| Ribonuclease HII [Methanosaeta harundinacea 6Ac]
gi|357210399|gb|AET65019.1| Ribonuclease HII [Methanosaeta harundinacea 6Ac]
Length = 207
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 70/222 (31%), Positives = 99/222 (44%), Gaps = 43/222 (19%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREEL---FEDLKVND 73
MG DEAG+GPV+G M + LA L DSK L +RE L E + ++
Sbjct: 1 MGADEAGKGPVIGSMFVAGVVIDEDRLFDLAALGVKDSKLLAPARREALAIRIEKIALDR 60
Query: 74 SV-GWAVDIIDPRELSAKMLNKNKIN-------LNEISHDSAIGLITRVLNIGILLTEVY 125
V ++ID EL K+++ N+I L +S D AI L+ + E +
Sbjct: 61 YVLEVRPEVID--ELR-KIMSMNEIMVRSFSKVLENLSADRAI------LDAADVKAERF 111
Query: 126 LDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETA 185
V + K S++ V +AD +PVV+ ASI+AKV RD ++R E
Sbjct: 112 ARRVKEVSKT---------SMEVVAEHRADRNHPVVAAASILAKVRRDLSVR-----EIE 157
Query: 186 ENMHRNFGSGYPGDHKHIIF---------GFPSLVRFSWGTC 218
+ + R GSGYP D I F P + R SW T
Sbjct: 158 KAVGREIGSGYPSDPATIRFLESWVGEHGDLPPVARQSWKTA 199
>gi|448668246|ref|ZP_21686377.1| ribonuclease HII [Haloarcula amylolytica JCM 13557]
gi|445768328|gb|EMA19413.1| ribonuclease HII [Haloarcula amylolytica JCM 13557]
Length = 211
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 95/212 (44%), Gaps = 30/212 (14%)
Query: 18 GIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVN-DSVG 76
G+DEAG+GPVLG M + + DSK ++ E+RE L +++ + D+VG
Sbjct: 4 GVDEAGKGPVLGSMFAAAVRA----DPEVLPDGVGDSKGIRPERRERLAGEIRESADAVG 59
Query: 77 WAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQ 136
A E+ + ++ + ++N ++ D+ ++ V G+ T DT DA ++
Sbjct: 60 VA-------EIPVERIDADGTDMNTLTVDAQAEALSVVARDGLPGTVDAGDT--DAARFG 110
Query: 137 AKLSQRF-PSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 195
+++ + AD P+V ASI+AKV RD + E + + GSG
Sbjct: 111 RRVADAVNADVTVTAEHGADETDPLVGAASIIAKVARDEHVAALAEE------YGDVGSG 164
Query: 196 YPGDHKHIIF---------GFPSLVRFSWGTC 218
YP D F P+ R SW TC
Sbjct: 165 YPSDPTTRAFLADYVDRHGELPACARRSWSTC 196
>gi|299067473|emb|CBJ38672.1| Ribonuclease HII (RNase HII) [Ralstonia solanacearum CMR15]
Length = 236
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 87/184 (47%), Gaps = 30/184 (16%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYC-PCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
+ G+DEAGRGP+ GP+ G + P Q LA DSK L +KRE L++++ V +
Sbjct: 29 LCGVDEAGRGPLAGPVTAGAVVLNPRKPIQGLA-----DSKVLTAKKREALYDEI-VEKA 82
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
+ W V A + ++IN+ + + + V G+L V +D
Sbjct: 83 LAWHV-------AEATVEEIDRINILHATMLAMQRAVQGVAAQGVLPDLVQVD------- 128
Query: 135 YQAKLSQRFPSIKFVVSK--KADSLYPVVSGASIVAKVTRDRTLRGW--IFEETAENMHR 190
R P + F V K D+L P +S ASI+AKVTRDR L F + ++H
Sbjct: 129 -----GNRCPQVAFAVEAIVKGDALVPAISAASILAKVTRDRQLAALHIAFPQYGFDVHA 183
Query: 191 NFGS 194
+G+
Sbjct: 184 GYGT 187
>gi|319937633|ref|ZP_08012037.1| ribonuclease [Coprobacillus sp. 29_1]
gi|319807275|gb|EFW03887.1| ribonuclease [Coprobacillus sp. 29_1]
Length = 210
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 67/232 (28%), Positives = 115/232 (49%), Gaps = 48/232 (20%)
Query: 16 IMGIDEAGRGPVLGPMVY-GCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
I+G+DEAGRGP+ GP+V G ++ Y + + DSK L E+KRE L+ DL + D+
Sbjct: 19 IIGLDEAGRGPMAGPLVVAGVIFEKGYYHEAI-----NDSKQLSEKKRESLY-DLIIRDA 72
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDT--VGDA 132
+ + ++IID ++ +++N+ + S G+I + +I I D +GD
Sbjct: 73 LAYQIEIIDVEDV-------DRLNVYQASKK---GMIDAIHHIAIQPDFALSDAMPLGDE 122
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW--IFEETAENMHR 190
+ A + K DSL + ASI+AKVTRDR ++ + + E H+
Sbjct: 123 IAHNAII-------------KGDSLSMSIGAASILAKVTRDRIMKKYDLQYPEYGFAQHK 169
Query: 191 NFGSGYPG-DHKHII--FGFPSLVRFSWGTCTSHFKDIVEVLWESDEMDEDV 239
GYP HK ++ +G + R S F+ ++++L E ++ +V
Sbjct: 170 ----GYPTKQHKELLKMYGVTPIHRRS-------FQPVIDILNEQLALELEV 210
>gi|159042290|ref|YP_001541542.1| ribonuclease HII [Caldivirga maquilingensis IC-167]
gi|189043570|sp|A8MAH5.1|RNH2_CALMQ RecName: Full=Ribonuclease HII; Short=RNase HII
gi|157921125|gb|ABW02552.1| ribonuclease HII [Caldivirga maquilingensis IC-167]
Length = 209
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 68/208 (32%), Positives = 97/208 (46%), Gaps = 26/208 (12%)
Query: 18 GIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGW 77
GIDEAGRGPV+GPMV + S + + DSK L R L++ L V+ +
Sbjct: 10 GIDEAGRGPVIGPMVIAIVGWSNSEAEGIGV---KDSKQLTPSGRSRLYK-LIVSKAPCV 65
Query: 78 AVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQA 137
I++P E+ + N+ LNE+ LI + T VY+D+ D +
Sbjct: 66 RHVIVEPSEIDYYV---NRGLLNELEAIKMSELIKACSGV----TRVYVDS-PDPNPSRF 117
Query: 138 KLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYP 197
+ ++ +V AD P+VS ASIVAKV RD + +ET + +FGSGYP
Sbjct: 118 RGFINVKDVELIVLNHADESIPLVSAASIVAKVIRDTIISR--LKET----YGDFGSGYP 171
Query: 198 GDHKHIIF--------GFPSLVRFSWGT 217
D + I P +VR SW T
Sbjct: 172 SDPRTISALRRWINNGTLPPIVRRSWRT 199
>gi|118475400|ref|YP_891226.1| ribonuclease HII [Campylobacter fetus subsp. fetus 82-40]
gi|424819944|ref|ZP_18244982.1| Ribonuclease HII [Campylobacter fetus subsp. venerealis NCTC 10354]
gi|118414626|gb|ABK83046.1| ribonuclease HII [Campylobacter fetus subsp. fetus 82-40]
gi|342326723|gb|EGU23207.1| Ribonuclease HII [Campylobacter fetus subsp. venerealis NCTC 10354]
Length = 189
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 90/187 (48%), Gaps = 41/187 (21%)
Query: 16 IMGIDEAGRGPVLGPMVY-GCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL-KVND 73
I GIDEAGRG + G +V GC++ P +++ + L +DSK L E+KREE+F +L K++D
Sbjct: 4 ICGIDEAGRGALAGELVVAGCVFKP-KFKKEIIKLGLSDSKKLTEQKREEIFLNLEKMSD 62
Query: 74 SV-----GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDT 128
+ VD I + + LN K++ NE +
Sbjct: 63 YLVVYFRNTIVDKIGLSDCLRRALNVIKMHFNECNFI----------------------- 99
Query: 129 VGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW--IFEETAE 186
Y +IK +V KADS P VS ASI+AKV+RDR +R + I+ +
Sbjct: 100 ------YDGNCDYGVKNIKTIV--KADSSVPQVSAASIIAKVSRDRQMRRFDKIYPDFGY 151
Query: 187 NMHRNFG 193
H+ +G
Sbjct: 152 AKHKGYG 158
>gi|448465151|ref|ZP_21598718.1| ribonuclease HII [Halorubrum kocurii JCM 14978]
gi|445815126|gb|EMA65061.1| ribonuclease HII [Halorubrum kocurii JCM 14978]
Length = 238
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 64/229 (27%), Positives = 93/229 (40%), Gaps = 35/229 (15%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVG 76
+G+DEAG+GPVLGPM + S TL + DSK L +RE + L+ D V
Sbjct: 3 LGVDEAGKGPVLGPMAAAAVLADPS---TLPA-DVDDSKRLTPSRRESIDAALREADRVA 58
Query: 77 WAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLD----TVGDA 132
V ++P E+ + N + + + L R IG LD V DA
Sbjct: 59 VGVAFVEPDEIDRPETDMNTLTVRGQARAVRAALADRAA-IGDRAAAGPLDEPVRVVADA 117
Query: 133 -EKYQAKLSQR-------------FPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRG 178
+ +++ ++R P + + AD P+V AS+VAKV RD+ +
Sbjct: 118 GDTSESRFARRLGEFVADGDADADLPEVDVSAAHGADEDDPLVGAASVVAKVARDQRM-- 175
Query: 179 WIFEETAENMHRNFGSGYPGDHKHIIF---------GFPSLVRFSWGTC 218
+ + GSGYP D F P R SW TC
Sbjct: 176 -AAVDADYAAYDGVGSGYPSDPTTRSFLRAYVDDHGDVPDCARRSWATC 223
>gi|442805505|ref|YP_007373654.1| ribonuclease HII [Clostridium stercorarium subsp. stercorarium DSM
8532]
gi|442741355|gb|AGC69044.1| ribonuclease HII [Clostridium stercorarium subsp. stercorarium DSM
8532]
Length = 256
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/212 (30%), Positives = 104/212 (49%), Gaps = 43/212 (20%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDEAGRGP+ GP+V GC+ P + + DSK L R+ LF D+ + ++V
Sbjct: 76 IGGIDEAGRGPLAGPVVAGCVVLP----ENCFIEHLNDSKKLTPSMRDRLF-DIIIEEAV 130
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
+ + ++ P E+ ++IN+ + + + ++ + T YL + DA +
Sbjct: 131 DYGIGMVMPEEI-------DEINIYNATKKAMMQAVSNMKK-----TPDYL--IIDAMEL 176
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG-- 193
++SQ + KK DSL V+ ASI+AKVTRDR W+ E A ++ +G
Sbjct: 177 PLQISQ-------LSLKKGDSLSISVAAASIIAKVTRDR----WM--EEAHKLYPQYGFD 223
Query: 194 --SGYPGDHKHIIFGFPSLVRFSWGTCTSHFK 223
GY G +H+ +R +G C H K
Sbjct: 224 RHKGY-GTEEHM-----EAIR-KYGLCPIHRK 248
>gi|448406608|ref|ZP_21573062.1| ribonuclease HII [Halosimplex carlsbadense 2-9-1]
gi|445677179|gb|ELZ29682.1| ribonuclease HII [Halosimplex carlsbadense 2-9-1]
Length = 252
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 64/221 (28%), Positives = 96/221 (43%), Gaps = 36/221 (16%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVG 76
G+DEAG+GPVLG M + + DSK + E+R EL ++ SVG
Sbjct: 4 FGVDEAGKGPVLGSM----FAAAVAVDPADLPDDVGDSKGIAPERRRELAATIREVGSVG 59
Query: 77 WAVDIIDPRELSAKMLNKNKINLNEIS---HDSAIGLITRVLNIGILLTEVYLDTVGDAE 133
A E+ + ++ + ++N ++ H A+ + + G+ + L+ DA
Sbjct: 60 VA-------EIPVERIDDEETDMNSLTVAAHAEAVDALADAVE-GVPTDDDPLEGYVDAG 111
Query: 134 KYQA-KLSQRF-----PSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAEN 187
A + +R P I AD Y VV ASIVAKV RD + E
Sbjct: 112 DTNAVRFERRVEDAAQPPIDARAEHGADETYVVVGAASIVAKVARDAHVEALAEE----- 166
Query: 188 MHRNFGSGYPGDH--KHIIFGF-------PSLVRFSWGTCT 219
+ + GSGYPGD + + G+ P+ R SW TCT
Sbjct: 167 -YGDVGSGYPGDDTTRDFLEGYVADHEELPACARASWQTCT 206
>gi|389847511|ref|YP_006349750.1| ribonuclease HII [Haloferax mediterranei ATCC 33500]
gi|448617289|ref|ZP_21665944.1| ribonuclease HII [Haloferax mediterranei ATCC 33500]
gi|388244817|gb|AFK19763.1| ribonuclease HII [Haloferax mediterranei ATCC 33500]
gi|445748638|gb|EMA00085.1| ribonuclease HII [Haloferax mediterranei ATCC 33500]
Length = 215
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 66/217 (30%), Positives = 95/217 (43%), Gaps = 32/217 (14%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVG 76
+G+DEAG+GPVLGPMV + + + L ADSK L +REEL L+ D +
Sbjct: 3 IGVDEAGKGPVLGPMVAAAVR---ADPEALPD-GIADSKRLTPVRREELAAKLRERDDIA 58
Query: 77 WAVDIIDPRELSAKMLNKNKINLN---EISHDSAIGLITRVLNIGILLTEVYLDTVGDAE 133
V I+P + + N + + E + A V + G + + V D
Sbjct: 59 VGVAFIEPATIDDPETDMNLLTVRAQVEAAAAVAADDDELVCDAGDVSESRFGRRVRDG- 117
Query: 134 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG 193
+++ S++ +AD + +V ASIVAKV RDR + I +E E G
Sbjct: 118 -----VAEAGASVEVHAQHRADDEHAIVGAASIVAKVERDRRV-AAIADEYGE-----VG 166
Query: 194 SGYPGDH-----------KHIIFGFPSLVRFSWGTCT 219
SGYP D +H I P R SW TC
Sbjct: 167 SGYPSDQTTRDFLREFVREHGI--LPDCARKSWSTCA 201
>gi|448620244|ref|ZP_21667592.1| ribonuclease HII [Haloferax denitrificans ATCC 35960]
gi|445757032|gb|EMA08388.1| ribonuclease HII [Haloferax denitrificans ATCC 35960]
Length = 215
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/218 (28%), Positives = 95/218 (43%), Gaps = 34/218 (15%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYC-PCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+G+DEAG+GPVLGPMV + P + + ADSK L E+R EL L+ D V
Sbjct: 3 VGVDEAGKGPVLGPMVAAAVRADPDALPE-----GIADSKRLSPERRAELAAKLRERDDV 57
Query: 76 GWAVDIIDPRELSAKMLNKNKINLN---EISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
V ++P + + N + + E + + A+ V + G + +
Sbjct: 58 EVGVAFVEPETIDDPETDMNLLTVRAQVEAAAEVAVDADELVCDAGDVSESRF------G 111
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF 192
+ + +++ S++ +AD + +V ASIVAKV RDR + E +
Sbjct: 112 RRVREGVAEAGVSVEVHAQHRADDEHAIVGAASIVAKVERDRRVEALAAE------YGEV 165
Query: 193 GSGYPGD-----------HKHIIFGFPSLVRFSWGTCT 219
GSGYP D +H I P R SW TC
Sbjct: 166 GSGYPSDGTTRKFLREYVREHGI--LPDCARKSWSTCA 201
>gi|448730927|ref|ZP_21713230.1| ribonuclease HII [Halococcus saccharolyticus DSM 5350]
gi|445792521|gb|EMA43122.1| ribonuclease HII [Halococcus saccharolyticus DSM 5350]
Length = 223
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/222 (27%), Positives = 96/222 (43%), Gaps = 40/222 (18%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYC-PCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
G+DEAGRGPVLG + C+ P + DSK L +RE + +L+ +D +
Sbjct: 5 FGVDEAGRGPVLGSLFVACVRADPAALPA-----GIDDSKRLSPARRETIAGELRDDDRI 59
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG----- 130
A RE++ ++ +LN ++ +A I V+++G E D +
Sbjct: 60 SIAT-----REVTPSEIDAPDTDLNALTIAAAGAAIDGVVSVG-ADAEAAADRMAGVIDA 113
Query: 131 ---DAEKYQAKLSQRFPS-IKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAE 186
DAE++ ++ + + + AD Y +V AS+VAKV RD + E
Sbjct: 114 CDTDAERFGRRVREATTADVAITAEHGADEEYDLVGAASVVAKVARDAHIADLADE---- 169
Query: 187 NMHRNFGSGYPGD-----------HKHIIFGFPSLVRFSWGT 217
H + GSGYP D H+H P R SW T
Sbjct: 170 --HGSVGSGYPSDPTTRDFLARYVHEH--GDLPPFARRSWKT 207
>gi|154250014|ref|YP_001410839.1| ribonuclease HII [Fervidobacterium nodosum Rt17-B1]
gi|154153950|gb|ABS61182.1| Ribonuclease H [Fervidobacterium nodosum Rt17-B1]
Length = 245
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 92/179 (51%), Gaps = 22/179 (12%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
I+G+DEAGRGP+ GP+V ++ + + + DSK L E KREEL+E K++ S
Sbjct: 10 SIIGVDEAGRGPIFGPVVAAAVF----FDEGIYIEGITDSKKLSESKREELYE--KISFS 63
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
+ + I P E+ N ++ E++ + A+ +++ + I +Y+D
Sbjct: 64 AKFGIGIATPDEIDV----YNILHATELAMNRALEILSYYIKID-EGKNIYVD------- 111
Query: 135 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG 193
L FPS K +V K D +S ASI+AKVTRDR ++ + E N+ ++ G
Sbjct: 112 -GKDLRLNFPS-KCIV--KGDEKVYQISAASILAKVTRDRIMKKFDKEFPEYNLSKHKG 166
>gi|408406045|ref|YP_006864029.1| ribonuclease HII [Candidatus Nitrososphaera gargensis Ga9.2]
gi|408366641|gb|AFU60371.1| ribonuclease HII [Candidatus Nitrososphaera gargensis Ga9.2]
Length = 225
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 97/210 (46%), Gaps = 28/210 (13%)
Query: 18 GIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELF-EDLKVNDSVG 76
G+DEAGRG ++GP+V + S L + DSK L R LF + +K+ DSV
Sbjct: 15 GVDEAGRGSIIGPLVVAGVSIKESKVALLTEMGVRDSKALTPRARARLFGQIMKIADSV- 73
Query: 77 WAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG-DAEKY 135
+ ++P E+ + ++L ++ A + + +IG EVY+D + ++Y
Sbjct: 74 -CIRKVNPVEVD------DSVSLRALNRLEARVMAAVINDIG--ADEVYVDCCDINPDRY 124
Query: 136 QAKLSQRFP-SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGS 194
+ + Q S K AD VVS ASI+AK+TRD ++ + +R GS
Sbjct: 125 KDYIGQHLKCSPKVHSIHHADVTNVVVSAASIIAKITRDEEIK------RIRSKYRGIGS 178
Query: 195 GYPGDHKHIIF---------GFPSLVRFSW 215
GYP D + + F P R SW
Sbjct: 179 GYPSDDRTMRFIRRYVAKNGSAPEFARKSW 208
>gi|225389108|ref|ZP_03758832.1| hypothetical protein CLOSTASPAR_02854 [Clostridium asparagiforme
DSM 15981]
gi|225044826|gb|EEG55072.1| hypothetical protein CLOSTASPAR_02854 [Clostridium asparagiforme
DSM 15981]
Length = 217
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 105/223 (47%), Gaps = 38/223 (17%)
Query: 10 WASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL 69
+A+ I GIDEAGRGP+ GP+ G + P + L+ DSK L E++REELF +
Sbjct: 27 YAACAMICGIDEAGRGPLAGPVAAGAVILP----KDCTLLHLNDSKKLSEKRREELFVQI 82
Query: 70 KVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 129
K +V W V I+ P + ++IN+ + ++++ + + +G+ ++ L+
Sbjct: 83 K-EQAVAWCVGIVGPERI-------DEINILQATYEA---MRQAIAGLGV-KPDILLN-- 128
Query: 130 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW--IFEETAEN 187
DA + + P I K D+ ++ ASI+AKVTRD + + +F + +
Sbjct: 129 -DAVEIPGVDIMQVPII------KGDAKSVSIAAASILAKVTRDHMMAEYDQLFPDYSFA 181
Query: 188 MHRNFGSGYPGDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLW 230
H+ +G+ H I G C H + + +W
Sbjct: 182 KHKGYGTAA---HIQAI--------KELGPCPIHRRSFIRNIW 213
>gi|448566780|ref|ZP_21637035.1| ribonuclease HII [Haloferax prahovense DSM 18310]
gi|445713369|gb|ELZ65146.1| ribonuclease HII [Haloferax prahovense DSM 18310]
Length = 215
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/218 (29%), Positives = 96/218 (44%), Gaps = 34/218 (15%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYC-PCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+G+DEAG+GPVLGPMV + P + ADSK L E+REEL L+ D V
Sbjct: 3 IGVDEAGKGPVLGPMVAAAVRGDPDALPD-----GIADSKRLAPERREELAAKLRDRDDV 57
Query: 76 GWAVDIIDPRELSAKMLNKNKINLN---EISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
V ++P + N N + + E + + A+ V + G + +
Sbjct: 58 EVGVAFVEPETIDDPETNMNLLTVRAQVEAAAEVAVDADELVCDAGDVSESRF------G 111
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF 192
+ + +++ ++ +AD + +V ASIVAKV RDR + EE A +
Sbjct: 112 RRVREGVAEAGVEVEVHAQHRADDEHAIVGAASIVAKVERDRRV-----EEIA-AAYGEV 165
Query: 193 GSGYPGD-----------HKHIIFGFPSLVRFSWGTCT 219
GSGYP D +H I P R SW TC
Sbjct: 166 GSGYPSDGTTRKFLREYVREHGI--LPDCARKSWSTCA 201
>gi|448339615|ref|ZP_21528633.1| ribonuclease HII [Natrinema pallidum DSM 3751]
gi|445619604|gb|ELY73131.1| ribonuclease HII [Natrinema pallidum DSM 3751]
Length = 222
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/217 (27%), Positives = 91/217 (41%), Gaps = 27/217 (12%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYC--PCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
G+DEAG+GP LG M ++ P + DSK L ++RE+L L+ +D
Sbjct: 3 FGVDEAGKGPALGSMFAAAVHLEDPAALPD-----GIRDSKRLTPDRREDLAASLRTDDR 57
Query: 75 VGWAVDIIDPRELSAKMLNKNK--INLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
+ V I P + + N + + + D AIG G + + DA
Sbjct: 58 IAIGVAEITPARIDEPGTDMNSLAVEAHATAIDDAIGSFESAAAAGDRPSGLCDACDTDA 117
Query: 133 EKYQAKLSQRFPSIKFVVSKK--ADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHR 190
+++ +++ S++ V + AD P+V ASI+AKV RD + E +
Sbjct: 118 DRFARRVADAC-SLEVDVDARHGADDDAPLVGAASIIAKVDRDAHIAALADE------YG 170
Query: 191 NFGSGYPGDHKHIIF---------GFPSLVRFSWGTC 218
GSGYPGD F P R SW TC
Sbjct: 171 PIGSGYPGDATTREFLASYVDEHGSLPPFARESWSTC 207
>gi|18312482|ref|NP_559149.1| ribonuclease HII [Pyrobaculum aerophilum str. IM2]
gi|74564756|sp|Q8ZXL6.1|RNH2_PYRAE RecName: Full=Ribonuclease HII; Short=RNase HII
gi|18159942|gb|AAL63331.1| ribonuclease HII (rnhB) [Pyrobaculum aerophilum str. IM2]
Length = 212
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 91/189 (48%), Gaps = 21/189 (11%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFED-LKVNDS 74
I GIDEAGRGPV+GPMV + + + DSK L RE ++E L+V
Sbjct: 2 IGGIDEAGRGPVIGPMVIAIV---VGESDDMIKIGVRDSKRLSPGAREAVYEKILRVAAC 58
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
V + V I+P E+ A +++ +N E+ + + + I + E Y D
Sbjct: 59 VNYVV--IEPAEIDA-YVSRGMLNALELKYTAQL--------INLCPAEYYYVDSPDVNP 107
Query: 135 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGS 194
+ + F + K V++ P V+ ASIVAKV RDR ++ + +E +FGS
Sbjct: 108 KRYESGLVFATGKRVIALHKGEAVPQVAAASIVAKVVRDRLIQ-LLKKEVG-----DFGS 161
Query: 195 GYPGDHKHI 203
GYP D + +
Sbjct: 162 GYPSDPRTL 170
>gi|448584728|ref|ZP_21647471.1| ribonuclease HII [Haloferax gibbonsii ATCC 33959]
gi|445727582|gb|ELZ79192.1| ribonuclease HII [Haloferax gibbonsii ATCC 33959]
Length = 215
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 65/218 (29%), Positives = 97/218 (44%), Gaps = 34/218 (15%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYC-PCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+G+DEAG+GPVLGPMV + P + ADSK L E+REEL L+ D V
Sbjct: 3 IGVDEAGKGPVLGPMVAAAVRGDPDALPD-----GIADSKRLAPERREELAAKLRDRDDV 57
Query: 76 GWAVDIIDPRELSAKMLNKNKINLN---EISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
V ++P + + N + + E + + A+ V + G + +
Sbjct: 58 EVGVAFVEPETIDDPETDMNLLTVRAQVEAAAEVAVDADELVCDAGDVSESRF------G 111
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF 192
+ + L++ ++ +AD + +V ASIVAKV RDR + EE A + +
Sbjct: 112 RRIREGLAEAGVEVEVHAQHRADDEHAIVGAASIVAKVERDRRV-----EEIAAS-YGEV 165
Query: 193 GSGYPGD-----------HKHIIFGFPSLVRFSWGTCT 219
GSGYP D +H I P R SW TC
Sbjct: 166 GSGYPSDGTTREFLREYVREHGI--LPDCARKSWSTCA 201
>gi|448440394|ref|ZP_21588557.1| ribonuclease HII [Halorubrum saccharovorum DSM 1137]
gi|445690290|gb|ELZ42505.1| ribonuclease HII [Halorubrum saccharovorum DSM 1137]
Length = 234
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 97/229 (42%), Gaps = 39/229 (17%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVG 76
+G+DEAG+GPVLGPMV + S + A DSK + +RE + ++ V
Sbjct: 3 LGVDEAGKGPVLGPMVAAAVLADPSDLPSDAD----DSKRIAPSRRESIDAAIREAADVA 58
Query: 77 WAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLT-EVYLDTVGDA-EK 134
V ++P E +++ ++N ++ + L+ G+ + + V DA +
Sbjct: 59 VGVAFVEPAE-----IDRPDTDMNTLTVRGQARAVRAALDGGVAVGLNGPVRVVADAGDT 113
Query: 135 YQAKLSQR----------------FPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRG 178
+A+ ++R P++ + AD PVV AS+VAKV RDR +
Sbjct: 114 SEARFARRLGEFIADRDTNAGDPGLPTVDVSAAHGADEDDPVVGAASVVAKVARDRRMAD 173
Query: 179 WIFEETAENMHRNFGSGYPGDHKHIIF---------GFPSLVRFSWGTC 218
+ A + GSGYP D F P R +W TC
Sbjct: 174 IDADYPA---YDGLGSGYPSDPTTRDFLRAYVDDHGDVPDCARRTWATC 219
>gi|397775767|ref|YP_006543313.1| ribonuclease HII [Natrinema sp. J7-2]
gi|397684860|gb|AFO59237.1| ribonuclease HII [Natrinema sp. J7-2]
Length = 222
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 58/215 (26%), Positives = 91/215 (42%), Gaps = 23/215 (10%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLN-FADSKTLKEEKREELFEDLKVNDSV 75
G+DEAG+GP LG M ++ + +A + DSK L ++REEL L+ +D +
Sbjct: 3 FGVDEAGKGPALGSMFAAAVH----LEDPVALPDGIRDSKRLTPDRREELAATLRADDRI 58
Query: 76 GWAVDIIDPRELSAKMLNKNKINL--NEISHDSAIGLITRVLNIGILLTEVYLDTVGDAE 133
V I P + + N + + + + + AIG + G + + DA+
Sbjct: 59 AIGVAEITPVRIDDPGTDMNSLTVEAHATAINDAIGSFGSAASTGDRPSVLCDACDTDAD 118
Query: 134 KYQAKLSQRFP-SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF 192
++ +++ P + AD P+V ASI+AKV RD + E +
Sbjct: 119 RFARRVADACPLEVDVDARHGADDDAPLVGAASIIAKVNRDAHVAALADE------YGPI 172
Query: 193 GSGYPGDHKHIIF---------GFPSLVRFSWGTC 218
GSGYP D F P R SW TC
Sbjct: 173 GSGYPSDATTREFLASYVDEHGSLPPFARASWSTC 207
>gi|269123118|ref|YP_003305695.1| Ribonuclease H [Streptobacillus moniliformis DSM 12112]
gi|268314444|gb|ACZ00818.1| Ribonuclease H [Streptobacillus moniliformis DSM 12112]
Length = 199
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 60/186 (32%), Positives = 86/186 (46%), Gaps = 33/186 (17%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I+G+DEAGRGP+ GP+V C+ C Y + L LN DSK L ++KR ELF L ND +
Sbjct: 13 IIGVDEAGRGPLAGPVVAACV-CINKYSKKLEELN--DSKKLTDKKRRELFNYLTTNDDI 69
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
V I+D + ++EI+ +LN L LD + EK
Sbjct: 70 KIGVGIVDEKV------------IDEIN----------ILNATFLAMNNALDNMEKDEK- 106
Query: 136 QAKLSQRFPSIKFVVSK-----KADSLYPVVSGASIVAKVTRDRTLRGW--IFEETAENM 188
L IK + K K D ++ ASI+AKVTRD + + I+
Sbjct: 107 DLVLVDGNKEIKGYLGKQEAIVKGDGKSLSIAAASIIAKVTRDNIMEEYDLIYPGYEFAK 166
Query: 189 HRNFGS 194
H+ +G+
Sbjct: 167 HKGYGT 172
>gi|291550686|emb|CBL26948.1| Ribonuclease HII [Ruminococcus torques L2-14]
Length = 252
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 94/189 (49%), Gaps = 29/189 (15%)
Query: 9 KWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFED 68
K+A I GIDEAGRGP+ GP+V G + P + L DSK L KREEL+++
Sbjct: 65 KYADYSFICGIDEAGRGPLAGPVVAGAVILP----KDCEILYLNDSKKLSAAKREELYDE 120
Query: 69 LKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRV-LNIGILLTEVYLD 127
+ + +V AV + P + ++IN+ + ++++ I+++ + GILL D
Sbjct: 121 I-MEKAVAAAVGMASPARI-------DEINILQATYEAMREAISKLAVEPGILLN----D 168
Query: 128 TVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW--IFEETA 185
V E P + + K D+ ++ ASI+AKVTRDR + + + E
Sbjct: 169 AVTIPEMI-------IPQVPII---KGDAKSVSIAAASILAKVTRDRLMVEYDKVMPEYG 218
Query: 186 ENMHRNFGS 194
H+ +GS
Sbjct: 219 FAGHKGYGS 227
>gi|308274702|emb|CBX31301.1| Ribonuclease HII [uncultured Desulfobacterium sp.]
Length = 214
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 74/236 (31%), Positives = 107/236 (45%), Gaps = 51/236 (21%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I G+DEAGRGP+ GP+V + P SY T DSK L +KR+ L+ ++ +V
Sbjct: 20 IAGVDEAGRGPIAGPVVSAAVILPFSYPIEGVT----DSKKLTPKKRDYLY-NIIYERAV 74
Query: 76 GWAVDIIDPRE------LSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 129
+ I+DP E L A +L+ + I + +S +S LI + I L++
Sbjct: 75 SIGIGIVDPAEIERINILRASLLSMS-IAVQNLSPESDYLLIDGIFPIPHTLSQ------ 127
Query: 130 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH 189
Q P DSL V+ ASIVAKVTRDR + + +E
Sbjct: 128 -----------QPIP--------HGDSLSLSVAAASIVAKVTRDRLMERYHYEYPEYGFI 168
Query: 190 RNFGSGYPG-DHKHIIFGFPSLVRFSWGTCTSH---FKDIVEVLWESDEMDEDVSS 241
++ GYP +HK I R S G C H FK + EV+ ++D E + S
Sbjct: 169 KH--KGYPTKEHKEAI-------RRS-GCCPIHRRSFKGVKEVISQTDSCCEPLVS 214
>gi|448607693|ref|ZP_21659646.1| ribonuclease HII [Haloferax sulfurifontis ATCC BAA-897]
gi|445737630|gb|ELZ89162.1| ribonuclease HII [Haloferax sulfurifontis ATCC BAA-897]
Length = 215
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 62/218 (28%), Positives = 93/218 (42%), Gaps = 34/218 (15%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYC-PCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+G+DEAG+GPVLGPMV + P + ADSK L E+R EL L+ D V
Sbjct: 3 VGVDEAGKGPVLGPMVAAAVRADPDALPD-----GIADSKRLTPERRAELAAKLRERDDV 57
Query: 76 GWAVDIIDPRELSAKMLNKNKINLN---EISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
V ++P + + N + + E + A+ V + G + +
Sbjct: 58 EVGVAFVEPETIDDPETDMNLLTVRAQVEAAAAVAVDADELVCDAGDVSESRF------G 111
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF 192
+ + +++ S++ +AD + +V ASIVAKV RDR + E +
Sbjct: 112 RRVREGVAEAGVSVEVHAQHRADDEHAIVGAASIVAKVERDRRVEALAAE------YGEV 165
Query: 193 GSGYPGD-----------HKHIIFGFPSLVRFSWGTCT 219
GSGYP D +H I P R SW TC
Sbjct: 166 GSGYPSDGTTRKFLREYVREHGI--LPDCARKSWSTCA 201
>gi|255513539|gb|EET89805.1| ribonuclease HII [Candidatus Micrarchaeum acidiphilum ARMAN-2]
Length = 212
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 73/211 (34%), Positives = 103/211 (48%), Gaps = 47/211 (22%)
Query: 41 SYQQTLATLNFADSKTLKEEKREELFEDLK-VNDSVGWAVDIIDPRELSAKMLNKNKINL 99
S ++ A + DSK L ++RE LF+ + ++D++ AVD I P E++ M NKI+L
Sbjct: 7 SNERKFAEIGVRDSKMLSRKRRELLFKSINSISDAI--AVDKITPAEINQAM--SNKISL 62
Query: 100 NEISHDSAIGLITRVL-NIGILLTEVYLDTVGDAEKYQAKLSQRFP-------------- 144
NE+ L ++ +IG VYLD+ + Q K RF
Sbjct: 63 NELEAIRFAKLFDQLKEDIGT----VYLDS---PDVIQEKFGIRFKMSSGKPLKVIGLKQ 115
Query: 145 ----SIKF--VVSK-KADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYP 197
IKF V+S+ KADS YPVVS ASI+AKV RDR ++ + +++ GSGYP
Sbjct: 116 KAQKGIKFTKVISEHKADSKYPVVSAASIIAKVVRDREVK-----KIEKSLRIRIGSGYP 170
Query: 198 GDHKHI--IFG------FPSLVRFSWGTCTS 220
D K I + G S VR W T S
Sbjct: 171 SDSKTIDAVRGNLTNSALLSHVREHWSTMRS 201
>gi|119872804|ref|YP_930811.1| ribonuclease HII [Pyrobaculum islandicum DSM 4184]
gi|189043646|sp|A1RU36.1|RNH2_PYRIL RecName: Full=Ribonuclease HII; Short=RNase HII
gi|119674212|gb|ABL88468.1| RNase HII [Pyrobaculum islandicum DSM 4184]
Length = 195
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 68/208 (32%), Positives = 95/208 (45%), Gaps = 26/208 (12%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFED-LKVNDS 74
I GIDEAGRGPV+GPMV + + L L DSKTL KRE ++ ++V D
Sbjct: 2 ICGIDEAGRGPVVGPMVIAAV---AGDGERLLQLGVRDSKTLSPTKREVIYARIIEVADC 58
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
V + V ++P + + + LN + D LI + E+Y D
Sbjct: 59 VNYVV--VEPHIIDEYVRRR---MLNSLELDFTARLIE------LCPAELYYVDSPDVNS 107
Query: 135 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGS 194
+ + F + + VV+ P V+ ASIVAKV RDR + + + +FGS
Sbjct: 108 RRYGDALSFITGRRVVALHGGESVPQVAAASIVAKVIRDRLI------DILKREIGDFGS 161
Query: 195 GYPGDHKHI----IFGFP-SLVRFSWGT 217
GYP D K I + P VR SW T
Sbjct: 162 GYPSDVKTIEWLRLGKIPVECVRRSWRT 189
>gi|219118288|ref|XP_002179922.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217408975|gb|EEC48908.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 189
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 95/185 (51%), Gaps = 26/185 (14%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTL-KEEKREELFEDLKVNDS 74
++G+DEAGRGP+ GP+V P + ADSKTL +E REEL+E + +D+
Sbjct: 3 VIGVDEAGRGPLAGPVVAAAAVVPID------IVGIADSKTLTRESVREELYEKIVSSDN 56
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
V WAV +ID SA++ +++N+ + + + V I + + + D +
Sbjct: 57 VRWAVAVID----SARI---DEVNILQATLQGMRLAASAVAGISEVPDNAFYALL-DGNR 108
Query: 135 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW--IFEETAENMHRNF 192
K++ R ++ K DS ++ ASI+AKVTRDR + G+ ++ E H+
Sbjct: 109 LPKKMAMRVETM-----VKGDSREYSIAAASILAKVTRDRLMHGYDKLYPEYNLAQHK-- 161
Query: 193 GSGYP 197
GYP
Sbjct: 162 --GYP 164
>gi|154151483|ref|YP_001405101.1| ribonuclease HII [Methanoregula boonei 6A8]
gi|166226624|sp|A7I9P7.1|RNH2_METB6 RecName: Full=Ribonuclease HII; Short=RNase HII
gi|154000035|gb|ABS56458.1| ribonuclease HII [Methanoregula boonei 6A8]
Length = 213
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 66/214 (30%), Positives = 94/214 (43%), Gaps = 25/214 (11%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I G+DEAG+G VLGPMV + + + DSK L +RE LF +K V
Sbjct: 2 ICGVDEAGKGSVLGPMVIAGV--GVGSTEMIDGFGLRDSKQLSPSERERLFVLIKKKCKV 59
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
A +I E+ A + ++ LN + +I ++ + ++ AE
Sbjct: 60 --ATVVISAAEIDA---FRREMTLNTCVARAHAVVIAQLAPEIAYVDACDVNPFRYAETV 114
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 195
+ LS + V ADS YPVVS ASIVAKVTRDR + + GSG
Sbjct: 115 RGYLSS---PCEIVSEHHADSTYPVVSAASIVAKVTRDREIAKL------AKKYGQIGSG 165
Query: 196 YPGDHKHIIFGF---------PSLVRFSWGTCTS 220
YP D + I + P + R SW T ++
Sbjct: 166 YPSDPETIAYLNAYIDEHRIPPPIARKSWKTVST 199
>gi|448360110|ref|ZP_21548753.1| ribonuclease HII [Natrialba chahannaoensis JCM 10990]
gi|445640487|gb|ELY93575.1| ribonuclease HII [Natrialba chahannaoensis JCM 10990]
Length = 221
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 95/221 (42%), Gaps = 36/221 (16%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVG 76
+G+DEAG+GP LG M ++ ++T+ DSK L +R+EL L+ +D +G
Sbjct: 3 IGVDEAGKGPALGSMFAAAVHV---ERETVLPDGITDSKQLTPARRDELATTLREDDRIG 59
Query: 77 WAVDIIDPRELSAKMLNKNKINLNEIS---HDSAIGLITRVLNIGILLTEVYLDTVGDAE 133
V E++ ++ + ++N +S H AI + + +T DA+
Sbjct: 60 VGV-----AEITIAQIDDPETDMNSLSVLAHAEAIEAVACDAGLETPITGHCDACDTDAD 114
Query: 134 KYQAKLSQRFP-SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF 192
++ +++ + AD P+V ASI+AKV RD + E++ F
Sbjct: 115 RFARRVADQCGLECTITAEHGADDDSPIVGAASIIAKVERDAHV---------ESVSAAF 165
Query: 193 ------GSGYPGDHKHIIF---------GFPSLVRFSWGTC 218
GSGYP D F PS R SW TC
Sbjct: 166 PDCGPVGSGYPSDPNTRAFLESYVDAHGKLPSCARESWSTC 206
>gi|421888303|ref|ZP_16319403.1| Ribonuclease HII (RNase HII) [Ralstonia solanacearum K60-1]
gi|378966342|emb|CCF96151.1| Ribonuclease HII (RNase HII) [Ralstonia solanacearum K60-1]
Length = 236
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 83/183 (45%), Gaps = 28/183 (15%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+ G+DEAGRGP+ GP+ G + ADSK L +KRE L++++ V ++
Sbjct: 29 LCGVDEAGRGPLAGPVTAGAVV----LNPRKPIKGLADSKVLTAKKREALYDEI-VEKAL 83
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
W V A + ++IN+ + + + V G+L V +D
Sbjct: 84 AWHV-------AEATVEEIDRINILHATMLAMQRAVQGVAAQGVLPDLVQVD-------- 128
Query: 136 QAKLSQRFPSIKFVVSK--KADSLYPVVSGASIVAKVTRDRTLRGW--IFEETAENMHRN 191
R P + F V K D+L P +S ASI+AKVTRDR L F ++H
Sbjct: 129 ----GNRCPQVAFAVEAIVKGDALVPAISAASILAKVTRDRQLAALHIAFPHYGFDVHAG 184
Query: 192 FGS 194
+G+
Sbjct: 185 YGT 187
>gi|386333599|ref|YP_006029769.1| ribonuclease hII (rnase hII) protein [Ralstonia solanacearum Po82]
gi|334196048|gb|AEG69233.1| ribonuclease hII (rnase hII) protein [Ralstonia solanacearum Po82]
Length = 236
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 83/183 (45%), Gaps = 28/183 (15%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+ G+DEAGRGP+ GP+ G + ADSK L +KRE L++++ V ++
Sbjct: 29 LCGVDEAGRGPLAGPVTAGAVV----LNPRKPIKGLADSKVLTAKKREALYDEI-VEKAL 83
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
W V A + ++IN+ + + + V G+L V +D
Sbjct: 84 AWHV-------AEATVEEIDRINILHATMLAMQRAVQGVAAQGVLPDLVQVD-------- 128
Query: 136 QAKLSQRFPSIKFVVSK--KADSLYPVVSGASIVAKVTRDRTLRGW--IFEETAENMHRN 191
R P + F V K D+L P +S ASI+AKVTRDR L F ++H
Sbjct: 129 ----GNRCPQVAFAVEAIVKGDALVPAISAASILAKVTRDRQLAALHIAFPHYGFDVHAG 184
Query: 192 FGS 194
+G+
Sbjct: 185 YGT 187
>gi|83749784|ref|ZP_00946758.1| Ribonuclease HII [Ralstonia solanacearum UW551]
gi|207743230|ref|YP_002259622.1| ribonuclease hII (rnase hII) protein [Ralstonia solanacearum
IPO1609]
gi|83723541|gb|EAP70745.1| Ribonuclease HII [Ralstonia solanacearum UW551]
gi|206594627|emb|CAQ61554.1| ribonuclease hII (rnase hII) protein [Ralstonia solanacearum
IPO1609]
Length = 236
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 83/183 (45%), Gaps = 28/183 (15%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+ G+DEAGRGP+ GP+ G + ADSK L +KRE L++++ V ++
Sbjct: 29 LCGVDEAGRGPLAGPVTAGAVV----LNPRKPIKGLADSKVLTAKKREALYDEI-VEKAL 83
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
W V A + ++IN+ + + + V G+L V +D
Sbjct: 84 AWHV-------AEATVEEIDRINILHATMLAMQRAVQGVAAQGVLPDLVQVD-------- 128
Query: 136 QAKLSQRFPSIKFVVSK--KADSLYPVVSGASIVAKVTRDRTLRGW--IFEETAENMHRN 191
R P + F V K D+L P +S ASI+AKVTRDR L F ++H
Sbjct: 129 ----GNRCPQVAFAVEAIVKGDALVPAISAASILAKVTRDRQLAALHIAFPHYGFDVHAG 184
Query: 192 FGS 194
+G+
Sbjct: 185 YGT 187
>gi|421897361|ref|ZP_16327729.1| ribonuclease hII (rnase hII) protein [Ralstonia solanacearum MolK2]
gi|206588567|emb|CAQ35530.1| ribonuclease hII (rnase hII) protein [Ralstonia solanacearum MolK2]
Length = 236
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 83/183 (45%), Gaps = 28/183 (15%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+ G+DEAGRGP+ GP+ G + ADSK L +KRE L++++ V ++
Sbjct: 29 LCGVDEAGRGPLAGPVTAGAVV----LNPRKPIKGLADSKVLTAKKREALYDEI-VEKAL 83
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
W V A + ++IN+ + + + V G+L V +D
Sbjct: 84 AWHV-------AEATVEEIDRINILHATMLAMQRAVQGVAAQGVLPDLVQVD-------- 128
Query: 136 QAKLSQRFPSIKFVVSK--KADSLYPVVSGASIVAKVTRDRTLRGW--IFEETAENMHRN 191
R P + F V K D+L P +S ASI+AKVTRDR L F ++H
Sbjct: 129 ----GNRCPQVAFAVEAIVKGDALVPAISAASILAKVTRDRQLAALHIAFPHYGFDVHAG 184
Query: 192 FGS 194
+G+
Sbjct: 185 YGT 187
>gi|376261101|ref|YP_005147821.1| ribonuclease HII [Clostridium sp. BNL1100]
gi|373945095|gb|AEY66016.1| ribonuclease HII [Clostridium sp. BNL1100]
Length = 255
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 61/204 (29%), Positives = 100/204 (49%), Gaps = 32/204 (15%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I G+DEAGRGP+ GP+V + P + L DSK L E +RE+LF+++K + ++
Sbjct: 74 IAGVDEAGRGPLAGPVVAAAVVLP----KGLTIEGVNDSKKLSEAQREKLFDEIK-DKAL 128
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
+ + +ID + + N +N +++ A+ + + + ILL V LD +
Sbjct: 129 SYGISVIDEKYID----EVNILNATKMAMADALSQLNPIADF-ILLDAVSLDNIS----- 178
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 195
+++ P I K DSL ++ ASI+AKVTRDR L + + + G G
Sbjct: 179 ----TKQVPII------KGDSLSLSIAAASILAKVTRDRLLTEYDAKYPQYGFAAHKGYG 228
Query: 196 YPGDHKHII----FGFPSLVRFSW 215
P +HI FG + R S+
Sbjct: 229 TP---QHISAIKKFGLCPIHRLSF 249
>gi|448500118|ref|ZP_21611597.1| ribonuclease HII [Halorubrum coriense DSM 10284]
gi|445696840|gb|ELZ48919.1| ribonuclease HII [Halorubrum coriense DSM 10284]
Length = 235
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 62/229 (27%), Positives = 91/229 (39%), Gaps = 38/229 (16%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVG 76
+G+DEAG+GP LGPMV + + Q +L T + DSK + ++REE+ + + V
Sbjct: 3 LGVDEAGKGPALGPMVAAAVV---ADQASLPT-DVDDSKRIAPDRREEMAAAFRSDPDVA 58
Query: 77 WAVDIIDPRELSAKMLNKNKINLN-------------EISHDSAIGLI-----TRVLNIG 118
V ++P E+ + N + + D I ++ T
Sbjct: 59 VGVARVEPDEIDRPDTDMNTLTVRGQARAVRRALAALPAETDGPIRVVADAGDTSEARFA 118
Query: 119 ILLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRG 178
L E D +AE + P++ + AD PVV AS+VAKV RD +
Sbjct: 119 RRLREFVADGGDEAEP---RADGALPAVDVTAAHGADEDDPVVGAASVVAKVVRDAAMTD 175
Query: 179 WIFEETAENMHRNFGSGYPGDHKHIIF---------GFPSLVRFSWGTC 218
A + GSGYP D F P R SW TC
Sbjct: 176 L----DAARPEYDLGSGYPSDPTTRAFLAAYVGDHGTLPDCARASWSTC 220
>gi|17546137|ref|NP_519539.1| ribonuclease HII [Ralstonia solanacearum GMI1000]
gi|39932439|sp|Q8XZH7.1|RNH2_RALSO RecName: Full=Ribonuclease HII; Short=RNase HII
gi|17428433|emb|CAD15120.1| probable ribonuclease hII (rnase hII) protein [Ralstonia
solanacearum GMI1000]
Length = 236
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 86/184 (46%), Gaps = 30/184 (16%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYC-PCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
+ G+DEAGRGP+ GP+ + P Q LA DSK L +KRE L++++ V +
Sbjct: 29 LCGVDEAGRGPLAGPVTAAAVVLNPRKPIQGLA-----DSKVLTAKKREALYDEI-VEKA 82
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
+ W V A + ++IN+ + + + V G+L V +D
Sbjct: 83 LAWHV-------AEATVEEIDRINILHATMLAMQRAVQGVAAQGVLPDLVQVD------- 128
Query: 135 YQAKLSQRFPSIKFVVSK--KADSLYPVVSGASIVAKVTRDRTLRGW--IFEETAENMHR 190
R P + F V K D+L P +S ASI+AKVTRDR L F + ++H
Sbjct: 129 -----GNRCPQVAFAVEAIVKGDALVPAISAASILAKVTRDRQLAALHIAFPQYGFDVHA 183
Query: 191 NFGS 194
+G+
Sbjct: 184 GYGT 187
>gi|228940925|ref|ZP_04103484.1| Ribonuclease [Bacillus thuringiensis serovar berliner ATCC 10792]
gi|228973854|ref|ZP_04134430.1| Ribonuclease [Bacillus thuringiensis serovar thuringiensis str.
T01001]
gi|228980444|ref|ZP_04140754.1| Ribonuclease [Bacillus thuringiensis Bt407]
gi|384187897|ref|YP_005573793.1| ribonuclease HII [Bacillus thuringiensis serovar chinensis CT-43]
gi|410676211|ref|YP_006928582.1| ribonuclease HII [Bacillus thuringiensis Bt407]
gi|452200276|ref|YP_007480357.1| Ribonuclease HII [Bacillus thuringiensis serovar thuringiensis str.
IS5056]
gi|228779264|gb|EEM27521.1| Ribonuclease [Bacillus thuringiensis Bt407]
gi|228785879|gb|EEM33882.1| Ribonuclease [Bacillus thuringiensis serovar thuringiensis str.
T01001]
gi|228818761|gb|EEM64827.1| Ribonuclease [Bacillus thuringiensis serovar berliner ATCC 10792]
gi|326941606|gb|AEA17502.1| ribonuclease HII [Bacillus thuringiensis serovar chinensis CT-43]
gi|409175340|gb|AFV19645.1| ribonuclease HII [Bacillus thuringiensis Bt407]
gi|452105669|gb|AGG02609.1| Ribonuclease HII [Bacillus thuringiensis serovar thuringiensis str.
IS5056]
Length = 257
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 88/181 (48%), Gaps = 28/181 (15%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDE GRGP+ GP+V + P + + LN DSK L E KRE ++++KV ++
Sbjct: 74 IAGIDEVGRGPLAGPVVTAAVVLPEDF--YIPGLN--DSKKLSEAKRERFYDEIKVQ-AI 128
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
V I+ P+ + ++IN+ + + + ++ V N+ + +D +
Sbjct: 129 AIGVGIVSPQVI-------DEINIYQATKQA---MLDAVANLSYTPQHLLIDAM------ 172
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLR--GWIFEETAENMHRNFG 193
KL P + K D+ +S ASI+AKVTRDR ++ G + E H +G
Sbjct: 173 --KLPTPIPQTSII---KGDAKSVSISAASIIAKVTRDRMMKELGEKYPEYGFEQHMGYG 227
Query: 194 S 194
+
Sbjct: 228 T 228
>gi|423385340|ref|ZP_17362596.1| ribonuclease HII [Bacillus cereus BAG1X1-2]
gi|423528302|ref|ZP_17504747.1| ribonuclease HII [Bacillus cereus HuB1-1]
gi|401635396|gb|EJS53151.1| ribonuclease HII [Bacillus cereus BAG1X1-2]
gi|402451965|gb|EJV83784.1| ribonuclease HII [Bacillus cereus HuB1-1]
Length = 257
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 88/181 (48%), Gaps = 28/181 (15%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDE GRGP+ GP+V + P + + LN DSK L E KRE ++++KV ++
Sbjct: 74 IAGIDEVGRGPLAGPVVTAAVVLPEDF--YIPGLN--DSKKLSEAKRERFYDEIKVQ-AI 128
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
V I+ P+ + ++IN+ + + + ++ V N+ + +D +
Sbjct: 129 AIGVGIVSPQVI-------DEINIYQATKQA---MLDAVANLSYTPQHLLIDAM------ 172
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLR--GWIFEETAENMHRNFG 193
KL P + K D+ +S ASI+AKVTRDR ++ G + E H +G
Sbjct: 173 --KLPTPIPQTSII---KGDAKSVSISAASIIAKVTRDRMMKELGEKYPEYGFEQHMGYG 227
Query: 194 S 194
+
Sbjct: 228 T 228
>gi|118575753|ref|YP_875496.1| ribonuclease HII [Cenarchaeum symbiosum A]
gi|189043576|sp|A0RV25.1|RNH2_CENSY RecName: Full=Ribonuclease HII; Short=RNase HII
gi|118194274|gb|ABK77192.1| ribonuclease HII [Cenarchaeum symbiosum A]
Length = 205
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 103/211 (48%), Gaps = 29/211 (13%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+ G+DEAGRG ++GP+V + + + L ++ DSK L + RE L+ ++ VN +
Sbjct: 3 VCGVDEAGRGSLVGPLVIAGVAIKRNRMRELKSMGVRDSKKLTRKARESLYPEI-VNMAD 61
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG-DAEK 134
+ + + P + + + LN++ +ITR+ + Y+D+ + +
Sbjct: 62 SYHISRVPPGVVDRSV---GRHMLNDLEARYMARVITRLGH-----GTTYVDSCDVNPRR 113
Query: 135 YQAKLSQRFPSIKFVVS-KKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG 193
+ ++S+ S + V S +AD + +VS ASI+AKV RDR++ E H + G
Sbjct: 114 FGGRVSEM--SGRTVRSYHRADDRFVIVSAASILAKVARDRSI------ERLRKSH-DVG 164
Query: 194 SGYPGDHKHIIF---------GFPSLVRFSW 215
SGYP D + + F P VR SW
Sbjct: 165 SGYPSDRRTVGFVRGYYNKNGAMPPFVRRSW 195
>gi|76801839|ref|YP_326847.1| ribonuclease HII [Natronomonas pharaonis DSM 2160]
gi|115305552|sp|Q3IRF6.1|RNH2_NATPD RecName: Full=Ribonuclease HII; Short=RNase HII
gi|76557704|emb|CAI49287.1| ribonuclease H, type 2 [Natronomonas pharaonis DSM 2160]
Length = 212
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 90/217 (41%), Gaps = 37/217 (17%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
++G+DEAG+GPV+G M + P DSK L +++RE L + L+ D +
Sbjct: 4 LVGVDEAGKGPVVGSMFVAAVRAPTEALPD----GIDDSKRLTDDRREALADRLRDADRI 59
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
AV P ++ + N+N+++ + + V G E L GD +
Sbjct: 60 DVAVVECQPADI-------DDANMNDLTVAAHAAALDGVAASG----ETVLCDAGDVDA- 107
Query: 136 QAKLSQRFPS-----IKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHR 190
+ + R + + AD +V ASI+AK R+R + E +
Sbjct: 108 -GRFADRVAAAATLDVSVAAEHGADGSDDLVGAASIIAKSARERHV------EQLSEQYG 160
Query: 191 NFGSGYPGDHKHIIF---------GFPSLVRFSWGTC 218
GSGYP D F GFP VR SW TC
Sbjct: 161 AVGSGYPSDPTTKAFLREAFEQEGGFPPCVRTSWSTC 197
>gi|284164032|ref|YP_003402311.1| ribonuclease HII [Haloterrigena turkmenica DSM 5511]
gi|284013687|gb|ADB59638.1| ribonuclease HII [Haloterrigena turkmenica DSM 5511]
Length = 228
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 62/227 (27%), Positives = 90/227 (39%), Gaps = 41/227 (18%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVG 76
G+DEAG+GP LG M ++C T ADSK L E+REEL ++ +D +
Sbjct: 3 FGVDEAGKGPALGSMFAAAVHC---EDPTALPDGIADSKRLSPERREELAAAIREDDGIR 59
Query: 77 WAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVY------LDTVG 130
V E++ ++ + ++N ++ + I L L T DT
Sbjct: 60 VGV-----AEITPARIDDPETDMNSLAVAAHAEAIDGALEADALETAPITGLCDACDT-- 112
Query: 131 DAEKYQAKLSQRFPS----------IKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 180
DAE++ +++ I AD P+V AS+VAKV RD +
Sbjct: 113 DAERFARRVTDACTDLFADASSALEINIEARHGADDESPIVGAASVVAKVERDAHVAALA 172
Query: 181 FEETAENMHRNFGSGYPGDHKHIIF---------GFPSLVRFSWGTC 218
E + GSGYP D F P R SW TC
Sbjct: 173 DE------YGPVGSGYPNDPNTREFLESYVGEYGDLPPCARESWSTC 213
>gi|145481239|ref|XP_001426642.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124393718|emb|CAK59244.1| unnamed protein product [Paramecium tetraurelia]
Length = 281
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 58/232 (25%), Positives = 111/232 (47%), Gaps = 29/232 (12%)
Query: 11 ASNPCIMGIDEAGRGPVLGPMVY-GCLYCPCSYQQTLATLNFADSKTLKEEKRE--ELFE 67
A++ I+GI EAGRGP++GP++ GC + ++ + + + +K + + E E+
Sbjct: 21 ANSEWILGIFEAGRGPLIGPIIIAGCFWPITNHNYIVKQCSLSLNKQFYQNQVESSEIIS 80
Query: 68 DLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLD 127
LK ++ + I ++LS K+L ++NEIS + + LI +L+ G + E Y++
Sbjct: 81 KLK-GKALQFETIEISAQKLSTKILAYTPSDVNEISLNYTLQLIKNILSKGYKIIECYIN 139
Query: 128 TVGDAEKYQAKLSQRF----PSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEE 183
+G E L + +KF+V ++ + A IV+ R+ L +
Sbjct: 140 PIGFKENLNEVLKKGLGLGNNDLKFIV-----GMHQTIIAAQIVSLQERNTRLL-----Q 189
Query: 184 TAENMHRN--FGSGYPGDH---------KHIIFGFPSLVRFSWGTCTSHFKD 224
++++ + GSGYP D +F +P +RF+W T ++ K
Sbjct: 190 IQQDIYPSGQMGSGYPSDALTREFLSKVSIPVFIYPQDIRFAWQTVSASLKQ 241
>gi|196228537|ref|ZP_03127404.1| Ribonuclease H [Chthoniobacter flavus Ellin428]
gi|196227940|gb|EDY22443.1| Ribonuclease H [Chthoniobacter flavus Ellin428]
Length = 202
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 85/174 (48%), Gaps = 34/174 (19%)
Query: 9 KWASNPCIM--GIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELF 66
K ++ C++ GIDE GRGP+ GP+V + P ++ TLN DSK L E+RE+++
Sbjct: 6 KLRADGCVLVAGIDEVGRGPLAGPVVAAAVILPEKFRHK--TLN--DSKKLSAEQREKIY 61
Query: 67 EDLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYL 126
+L ++V W V +++ E+ ++IN+ SH++ +T +
Sbjct: 62 AELTTRENVHWTVCVVEVEEI-------DRINILRASHEAMRRSVTAL------------ 102
Query: 127 DTVGDAEKYQAKLSQRFPSIKFVVSKKA----DSLYPVVSGASIVAKVTRDRTL 176
A K L P F + A D+L ++ AS++AKVTRDR +
Sbjct: 103 -----ATKPDHALIDGLPVRPFPIPHTALVGGDALSFSIAAASVIAKVTRDRIM 151
>gi|363897285|ref|ZP_09323824.1| ribonuclease HII [Oribacterium sp. ACB7]
gi|361958782|gb|EHL12079.1| ribonuclease HII [Oribacterium sp. ACB7]
Length = 214
Score = 70.1 bits (170), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 62/229 (27%), Positives = 104/229 (45%), Gaps = 58/229 (25%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I G+DEAGRGP+ GP+V C P Y LN DSK + E++RE LFE+L+ +++
Sbjct: 29 IAGVDEAGRGPLAGPVVAACAVIPLDY--PFYYLN--DSKKMSEKRREALFEELQ-KEAI 83
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
+ + I+ P + ++IN+ + ++ E + + D EK
Sbjct: 84 AFGIGIVSPERI-------DEINILQATY------------------EAMREALKDMEK- 117
Query: 136 QAKLSQR--------FPSI----KFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW--IF 181
+ LS R P I K +V A SL ++ AS++AKVTRD + + ++
Sbjct: 118 RFSLSPRILLNDAVTIPGISIPQKAIVHGDAKSL--SIAAASVLAKVTRDHIMLEYDELY 175
Query: 182 EETAENMHRNFGSGYPGDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLW 230
E H+ +G+ H+ I + G C H + ++ L+
Sbjct: 176 PEYGFKQHKGYGTKL---HREAI--------LTHGPCPIHRRSFLKNLY 213
>gi|300704217|ref|YP_003745820.1| ribonuclease HII [Ralstonia solanacearum CFBP2957]
gi|299071881|emb|CBJ43210.1| Ribonuclease HII (RNase HII) [Ralstonia solanacearum CFBP2957]
Length = 236
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 83/183 (45%), Gaps = 28/183 (15%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+ G+DEAGRGP+ GP+ G + ADSK L ++RE L++++ V ++
Sbjct: 29 LCGVDEAGRGPLAGPVTAGAVV----LNPRKPIKGLADSKVLTAKRREALYDEI-VEKAL 83
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
W V A + ++IN+ + + + V G+L V +D
Sbjct: 84 AWHV-------AEATVEEIDRINILHATMLAMQRAVQGVAAQGVLPDLVQVD-------- 128
Query: 136 QAKLSQRFPSIKFVVSK--KADSLYPVVSGASIVAKVTRDRTLRGW--IFEETAENMHRN 191
R P + F V K D+L P +S ASI+AKVTRDR L F ++H
Sbjct: 129 ----GNRCPQVAFAVEAIVKGDALVPAISAASILAKVTRDRQLAALHVAFPHYGFDVHAG 184
Query: 192 FGS 194
+G+
Sbjct: 185 YGT 187
>gi|145590574|ref|YP_001152576.1| ribonuclease HII [Pyrobaculum arsenaticum DSM 13514]
gi|189043645|sp|A4WHQ7.1|RNH2_PYRAR RecName: Full=Ribonuclease HII; Short=RNase HII
gi|145282342|gb|ABP49924.1| RNase HII [Pyrobaculum arsenaticum DSM 13514]
Length = 198
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 68/214 (31%), Positives = 101/214 (47%), Gaps = 26/214 (12%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELF-EDLKVNDS 74
+ GIDEAGRGPV+GP+V + + L+ + DSK+L RE L+ + L++
Sbjct: 5 VGGIDEAGRGPVVGPLVLAIV---VGDSEALSKIGVRDSKSLSPRAREVLYGKILEMAVC 61
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
V +AV ++P E+ L+ ++ LN + A L+ + ++Y D +
Sbjct: 62 VNYAV--VEPYEID---LHVSRGMLNALEMKYAAKLME------LCPADLYYVDSPDVKA 110
Query: 135 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGS 194
+ F + + VVS P V+ ASIVAKV RDR + E +FGS
Sbjct: 111 ARFGDGLSFLTGRRVVSLHKGEAVPQVAAASIVAKVVRDRLV------EMLRKEVGDFGS 164
Query: 195 GYPGDHK--HIIFG--FP-SLVRFSWGTCTSHFK 223
GYP D K + G P VR+SW T FK
Sbjct: 165 GYPSDRKTREWLRGGRIPHECVRWSWETVGKLFK 198
>gi|379005051|ref|YP_005260723.1| ribonuclease H, mammalian HI/archaeal HII subfamily [Pyrobaculum
oguniense TE7]
gi|375160504|gb|AFA40116.1| ribonuclease H, mammalian HI/archaeal HII subfamily [Pyrobaculum
oguniense TE7]
Length = 198
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 68/214 (31%), Positives = 101/214 (47%), Gaps = 26/214 (12%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELF-EDLKVNDS 74
+ GIDEAGRGPV+GP+V + + L+ + DSK+L RE L+ + L++
Sbjct: 5 VGGIDEAGRGPVVGPLVLAIV---VGDSEALSKIGVRDSKSLSPRAREVLYGKILEMAVC 61
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
V +AV ++P E+ L+ ++ LN + A L+ + ++Y D +
Sbjct: 62 VNYAV--VEPYEID---LHVSRGMLNALEMKYAAKLME------LCPADLYYVDSPDVKA 110
Query: 135 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGS 194
+ F + + VVS P V+ ASIVAKV RDR + E +FGS
Sbjct: 111 ARFGDGLSFLTGRRVVSLHKGEAVPQVAAASIVAKVVRDRLV------EMLRKEVGDFGS 164
Query: 195 GYPGDHKH---IIFG-FP-SLVRFSWGTCTSHFK 223
GYP D K + G P VR+SW T FK
Sbjct: 165 GYPSDRKTREWLRAGRIPHECVRWSWETVGKLFK 198
>gi|229129113|ref|ZP_04258086.1| Ribonuclease [Bacillus cereus BDRD-Cer4]
gi|228654350|gb|EEL10215.1| Ribonuclease [Bacillus cereus BDRD-Cer4]
Length = 254
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 87/181 (48%), Gaps = 28/181 (15%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDE GRGP+ GP+V + P + + LN DSK L E KRE ++++KV ++
Sbjct: 71 IAGIDEVGRGPLAGPVVTAAVVLPEDF--YIPGLN--DSKKLSEAKRERFYDEIKVQ-AI 125
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
V I+ P+ + + IN+ + + + ++ V N+ + +D +
Sbjct: 126 AIGVGIVSPQVI-------DDINIYQATKQA---MLDAVANLSCTPQHLLIDAM------ 169
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLR--GWIFEETAENMHRNFG 193
KL P + K D+ +S ASI+AKVTRDR ++ G + E H +G
Sbjct: 170 --KLPTPIPQTSII---KGDAKSVSISAASIIAKVTRDRMMKELGGKYPEYGFEQHMGYG 224
Query: 194 S 194
+
Sbjct: 225 T 225
>gi|30021925|ref|NP_833556.1| ribonuclease HII [Bacillus cereus ATCC 14579]
gi|39932341|sp|Q819W9.1|RNH2_BACCR RecName: Full=Ribonuclease HII; Short=RNase HII
gi|29897481|gb|AAP10757.1| Ribonuclease HII [Bacillus cereus ATCC 14579]
Length = 257
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 87/181 (48%), Gaps = 28/181 (15%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDE GRGP+ GP+V + P + + LN DSK L E KRE ++++KV ++
Sbjct: 74 IAGIDEVGRGPLAGPVVTAAVVLPEDF--YIPGLN--DSKKLSEAKRERFYDEIKVQ-AI 128
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
V I+ P+ + + IN+ + + + ++ V N+ + +D +
Sbjct: 129 AIGVGIVSPQVI-------DDINIYQATKQA---MLDAVANLSCTPQHLLIDAM------ 172
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLR--GWIFEETAENMHRNFG 193
KL P + K D+ +S ASI+AKVTRDR ++ G + E H +G
Sbjct: 173 --KLPTPIPQTSII---KGDAKSVSISAASIIAKVTRDRMMKELGGKYPEYGFEQHMGYG 227
Query: 194 S 194
+
Sbjct: 228 T 228
>gi|423412358|ref|ZP_17389478.1| ribonuclease HII [Bacillus cereus BAG3O-2]
gi|423431857|ref|ZP_17408861.1| ribonuclease HII [Bacillus cereus BAG4O-1]
gi|401104426|gb|EJQ12403.1| ribonuclease HII [Bacillus cereus BAG3O-2]
gi|401116613|gb|EJQ24451.1| ribonuclease HII [Bacillus cereus BAG4O-1]
Length = 257
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 87/181 (48%), Gaps = 28/181 (15%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDE GRGP+ GP+V + P + + LN DSK L E KRE ++++KV ++
Sbjct: 74 IAGIDEVGRGPLAGPVVTAAVVLPEDF--YIPGLN--DSKKLSEAKRERFYDEIKVQ-AI 128
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
V I+ P+ + + IN+ + + + ++ V N+ + +D +
Sbjct: 129 AIGVGIVSPQVI-------DDINIYQATKQA---MLDAVANLSCTPQHLLIDAM------ 172
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLR--GWIFEETAENMHRNFG 193
KL P + K D+ +S ASI+AKVTRDR ++ G + E H +G
Sbjct: 173 --KLPTPIPQTSII---KGDAKSVSISAASIIAKVTRDRMMKELGEKYPEYGFEQHMGYG 227
Query: 194 S 194
+
Sbjct: 228 T 228
>gi|291563277|emb|CBL42093.1| Ribonuclease HII [butyrate-producing bacterium SS3/4]
Length = 214
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 87/183 (47%), Gaps = 25/183 (13%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDEAGRGP+ GP+ G P + L DSK L E +REELF ++K ++
Sbjct: 34 ICGIDEAGRGPLAGPVAAGAAILP----KDCRILYLNDSKKLSESRREELFLEIK-EKAI 88
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
W+V I+ P + ++IN+ + ++++ I+++ + +L + G A
Sbjct: 89 AWSVGIVGPERI-------DEINILQATYEAMRQAISKLDPVPQVLLNDAVTIPGVA--- 138
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 195
P + + K D+ ++ ASI+AKVTRD + + E ++ G G
Sbjct: 139 -------IPQVPII---KGDAKSVSIAAASILAKVTRDHMMEEYDKEYPEYGFAKHKGYG 188
Query: 196 YPG 198
P
Sbjct: 189 TPA 191
>gi|116754092|ref|YP_843210.1| ribonuclease HII [Methanosaeta thermophila PT]
gi|121694604|sp|A0B796.1|RNH2_METTP RecName: Full=Ribonuclease HII; Short=RNase HII
gi|116665543|gb|ABK14570.1| RNase HII [Methanosaeta thermophila PT]
Length = 211
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 97/214 (45%), Gaps = 23/214 (10%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
I+G+DEAG+GPV+G M + LA DSK L +RE + +
Sbjct: 3 LILGVDEAGKGPVIGSMFVAGVVFSEEDIFDLAACGVKDSKLLSPTRRESMERKILSIAR 62
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
+ +++ + +M+ +++NEI + +++R+ +L ++ AE+
Sbjct: 63 ESFVLEVTAQQIDDLRMV----MSMNEIMVRAHSRVVSRLQADRAILDAADVN----AER 114
Query: 135 YQAKLSQ-RFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG 193
+ ++ + I + AD + VV+ ASI+AKV RDR++R + + R G
Sbjct: 115 FAQRVREVSGKPIDILAEHNADRKHIVVAAASIIAKVARDRSIR-----DLEAALGRPLG 169
Query: 194 SGYPGDHKHIIF---------GFPSLVRFSWGTC 218
SGYP D + F PS VR SW T
Sbjct: 170 SGYPSDPATVRFLKEWIEENGDLPSFVRKSWSTA 203
>gi|20807898|ref|NP_623069.1| ribonuclease HII [Thermoanaerobacter tengcongensis MB4]
gi|39932431|sp|Q8R9X9.1|RNH2_THETN RecName: Full=Ribonuclease HII; Short=RNase HII
gi|20516465|gb|AAM24673.1| Ribonuclease HII [Thermoanaerobacter tengcongensis MB4]
Length = 241
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 65/214 (30%), Positives = 102/214 (47%), Gaps = 38/214 (17%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I G+DEAGRGP++GP+V C+ P + + DSK L EEKRE+L E +K +++
Sbjct: 59 IAGVDEAGRGPLVGPVVAACVILP----KEIFIPEINDSKKLPEEKREKLAEVIK-KEAI 113
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
+ + I+D RE+ ++IN +LN + + + V + +Y
Sbjct: 114 SYGIGIVDCREI-------DEIN---------------ILNATLKAMKKAIFEVKEKIEY 151
Query: 136 QAKLSQRFPS--IKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG 193
+ P IK + K DS ++ ASI+AKV RDR +R + N +N
Sbjct: 152 LLVDAISIPDMPIKQLPIVKGDSKSISIAAASILAKVERDRIMREYHKLYPQYNFAKN-- 209
Query: 194 SGYPGDHKHIIFGFPSLVRFSWGTCTSHFKDIVE 227
GY G +HI +L + +G C H + VE
Sbjct: 210 KGY-GTKEHI----EALKK--YGPCPIHRRTYVE 236
>gi|423585754|ref|ZP_17561841.1| ribonuclease HII [Bacillus cereus VD045]
gi|423628930|ref|ZP_17604679.1| ribonuclease HII [Bacillus cereus VD154]
gi|423641082|ref|ZP_17616700.1| ribonuclease HII [Bacillus cereus VD166]
gi|423649700|ref|ZP_17625270.1| ribonuclease HII [Bacillus cereus VD169]
gi|423656696|ref|ZP_17631995.1| ribonuclease HII [Bacillus cereus VD200]
gi|401233100|gb|EJR39596.1| ribonuclease HII [Bacillus cereus VD045]
gi|401268475|gb|EJR74523.1| ribonuclease HII [Bacillus cereus VD154]
gi|401280143|gb|EJR86065.1| ribonuclease HII [Bacillus cereus VD166]
gi|401282980|gb|EJR88877.1| ribonuclease HII [Bacillus cereus VD169]
gi|401290437|gb|EJR96131.1| ribonuclease HII [Bacillus cereus VD200]
Length = 257
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 87/181 (48%), Gaps = 28/181 (15%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDE GRGP+ GP+V + P + + LN DSK L E KRE ++++KV ++
Sbjct: 74 IAGIDEVGRGPLAGPVVTAAVVLPEDF--YIPGLN--DSKKLSEAKRERFYDEIKVQ-AI 128
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
V I+ P+ + + IN+ + + + ++ V N+ + +D +
Sbjct: 129 AIGVGIVSPQVI-------DDINIYQATKQA---MLDAVANLSCTPQHLLIDAM------ 172
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLR--GWIFEETAENMHRNFG 193
KL P + K D+ +S ASI+AKVTRDR ++ G + E H +G
Sbjct: 173 --KLPTPIPQTSII---KGDAKSVSISAASIIAKVTRDRMMKELGEKYPEYGFEQHMGYG 227
Query: 194 S 194
+
Sbjct: 228 T 228
>gi|218233890|ref|YP_002368638.1| ribonuclease HII [Bacillus cereus B4264]
gi|226736814|sp|B7HDW0.1|RNH2_BACC4 RecName: Full=Ribonuclease HII; Short=RNase HII
gi|218161847|gb|ACK61839.1| ribonuclease HII [Bacillus cereus B4264]
Length = 257
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 87/181 (48%), Gaps = 28/181 (15%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDE GRGP+ GP+V + P + + LN DSK L E KRE ++++KV ++
Sbjct: 74 IAGIDEVGRGPLAGPVVTAAVVLPEDF--YIPGLN--DSKKLSEAKRERFYDEIKVQ-AI 128
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
V I+ P+ + + IN+ + + + ++ V N+ + +D +
Sbjct: 129 AIGVGIVSPQVI-------DDINIYQATKQA---MLDAVANLSCTPQHLLIDAM------ 172
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLR--GWIFEETAENMHRNFG 193
KL P + K D+ +S ASI+AKVTRDR ++ G + E H +G
Sbjct: 173 --KLPTPIPQTSII---KGDAKSVSISAASIIAKVTRDRMMKELGEKYPEYGFEQHMGYG 227
Query: 194 S 194
+
Sbjct: 228 T 228
>gi|374632053|ref|ZP_09704427.1| ribonuclease H, mammalian HI/archaeal HII subfamily [Metallosphaera
yellowstonensis MK1]
gi|373525883|gb|EHP70663.1| ribonuclease H, mammalian HI/archaeal HII subfamily [Metallosphaera
yellowstonensis MK1]
Length = 212
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 65/190 (34%), Positives = 91/190 (47%), Gaps = 28/190 (14%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVG 76
+GIDEAGRG ++GPMV + L + DSK L ++REELF L + +S
Sbjct: 3 LGIDEAGRGCLIGPMVVAGVVLSEKGMGRLRAVGVKDSKKLTRKRREELFH-LILEESEA 61
Query: 77 WAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGD----- 131
A+ P E+ NLNE+++ + + R L+ + V +D VG
Sbjct: 62 VAIAKALPDEIDTN-------NLNELTYRKVLE-VMRALS-AFPIDTVTVDRVGKEVEVI 112
Query: 132 AEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRN 191
E Y+ L P++ + AD + S ASIVAKV RDR I E E + +
Sbjct: 113 EEIYRLGLR---PNVVY----HADENFLEASAASIVAKVVRDR-----IVLELREQ-YGD 159
Query: 192 FGSGYPGDHK 201
FGSGYP D K
Sbjct: 160 FGSGYPSDPK 169
>gi|423582047|ref|ZP_17558158.1| ribonuclease HII [Bacillus cereus VD014]
gi|423635392|ref|ZP_17611045.1| ribonuclease HII [Bacillus cereus VD156]
gi|401212926|gb|EJR19667.1| ribonuclease HII [Bacillus cereus VD014]
gi|401278143|gb|EJR84079.1| ribonuclease HII [Bacillus cereus VD156]
Length = 257
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 87/181 (48%), Gaps = 28/181 (15%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDE GRGP+ GP+V + P + + LN DSK L E KRE ++++KV ++
Sbjct: 74 IAGIDEVGRGPLAGPVVTAAVILPEDF--YIPGLN--DSKKLSEAKRERFYDEIKVQ-AI 128
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
V I+ P+ + + IN+ + + + ++ V N+ + +D +
Sbjct: 129 AIGVGIVSPQVI-------DDINIYQATKQA---MLDAVANLSCTPQHLLIDAM------ 172
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLR--GWIFEETAENMHRNFG 193
KL P + K D+ +S ASI+AKVTRDR ++ G + E H +G
Sbjct: 173 --KLPTPIPQTSII---KGDAKSVSISAASIIAKVTRDRMMKELGEKYPEYGFEQHMGYG 227
Query: 194 S 194
+
Sbjct: 228 T 228
>gi|297544719|ref|YP_003677021.1| Ribonuclease H [Thermoanaerobacter mathranii subsp. mathranii str.
A3]
gi|296842494|gb|ADH61010.1| Ribonuclease H [Thermoanaerobacter mathranii subsp. mathranii str.
A3]
Length = 242
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 65/213 (30%), Positives = 102/213 (47%), Gaps = 36/213 (16%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDEAGRGP++GP+V C+ P + + DSK L EEKRE L E +K ++
Sbjct: 60 IAGIDEAGRGPLVGPVVAACVILP----KNVFIPEINDSKKLSEEKREVLSEVIK-KVAI 114
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLN-IGILLTEVYLDTVGDAEK 134
+A+ I+D E+ +KIN+ ++ + I+++ I LL + T+ E
Sbjct: 115 SYAIGIVDCEEI-------DKINILNATYKAMQIAISKIQQKIDYLLVDAI--TIPQIEI 165
Query: 135 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGS 194
Q + K DS ++ ASI+AKV RD+ ++ + N +N
Sbjct: 166 NQKAII------------KGDSKSISIAAASILAKVERDKIMKEYHKIYPQYNFEKN--K 211
Query: 195 GYPGDHKHIIFGFPSLVRFSWGTCTSHFKDIVE 227
GY G +HI +L + +G C H K +E
Sbjct: 212 GY-GTKEHI----EALKK--YGPCPIHRKTFIE 237
>gi|228960053|ref|ZP_04121717.1| Ribonuclease [Bacillus thuringiensis serovar pakistani str. T13001]
gi|229047524|ref|ZP_04193114.1| Ribonuclease [Bacillus cereus AH676]
gi|229111308|ref|ZP_04240861.1| Ribonuclease [Bacillus cereus Rock1-15]
gi|229146408|ref|ZP_04274779.1| Ribonuclease [Bacillus cereus BDRD-ST24]
gi|229152036|ref|ZP_04280231.1| Ribonuclease [Bacillus cereus m1550]
gi|228631385|gb|EEK88019.1| Ribonuclease [Bacillus cereus m1550]
gi|228637041|gb|EEK93500.1| Ribonuclease [Bacillus cereus BDRD-ST24]
gi|228672084|gb|EEL27375.1| Ribonuclease [Bacillus cereus Rock1-15]
gi|228723771|gb|EEL75126.1| Ribonuclease [Bacillus cereus AH676]
gi|228799569|gb|EEM46522.1| Ribonuclease [Bacillus thuringiensis serovar pakistani str. T13001]
Length = 254
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 87/181 (48%), Gaps = 28/181 (15%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDE GRGP+ GP+V + P + + LN DSK L E KRE ++++KV ++
Sbjct: 71 IAGIDEVGRGPLAGPVVTAAVVLPEDF--YIPGLN--DSKKLSEAKRERFYDEIKVQ-AI 125
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
V I+ P+ + + IN+ + + + ++ V N+ + +D +
Sbjct: 126 AIGVGIVSPQVI-------DDINIYQATKQA---MLDAVANLSCTPQHLLIDAM------ 169
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLR--GWIFEETAENMHRNFG 193
KL P + K D+ +S ASI+AKVTRDR ++ G + E H +G
Sbjct: 170 --KLPTPIPQTSII---KGDAKSVSISAASIIAKVTRDRMMKELGEKYPEYGFEQHMGYG 224
Query: 194 S 194
+
Sbjct: 225 T 225
>gi|228922591|ref|ZP_04085891.1| Ribonuclease [Bacillus thuringiensis serovar huazhongensis BGSC
4BD1]
gi|228837020|gb|EEM82361.1| Ribonuclease [Bacillus thuringiensis serovar huazhongensis BGSC
4BD1]
Length = 254
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 87/181 (48%), Gaps = 28/181 (15%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDE GRGP+ GP+V + P + + LN DSK L E KRE ++++KV ++
Sbjct: 71 IAGIDEVGRGPLAGPVVTAAVILPEDF--YIPGLN--DSKKLSEAKRERFYDEIKVQ-AI 125
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
V I+ P+ + + IN+ + + + ++ V N+ + +D +
Sbjct: 126 AIGVGIVSPQVI-------DDINIYQATKQA---MLDAVANLSCTPQHLLIDAM------ 169
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLR--GWIFEETAENMHRNFG 193
KL P + K D+ +S ASI+AKVTRDR ++ G + E H +G
Sbjct: 170 --KLPTPIPQTSII---KGDAKSVSISAASIIAKVTRDRMMKELGEKYPEYGFEQHMGYG 224
Query: 194 S 194
+
Sbjct: 225 T 225
>gi|448350813|ref|ZP_21539624.1| ribonuclease HII [Natrialba taiwanensis DSM 12281]
gi|445635685|gb|ELY88852.1| ribonuclease HII [Natrialba taiwanensis DSM 12281]
Length = 254
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 65/243 (26%), Positives = 103/243 (42%), Gaps = 46/243 (18%)
Query: 9 KWASNPCIM--GIDEAGRGPVLGPMVYGCLYCPCSYQQTLATL--NFADSKTLKEEKREE 64
+ A++P M G+DEAG+GP LG M ++ +T A L ADSK L +R+E
Sbjct: 10 RSATDPRRMPFGVDEAGKGPALGSMFAAAVHV-----ETDAALPEGIADSKRLAPARRDE 64
Query: 65 LFEDLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGIL---- 120
L + L+ +D +G + I P ++ + N + + +H AI +++
Sbjct: 65 LADTLRADDRIGIGLAEITPAQIDDPETDMNSLTVR--AHAQAIESLSKENENKDENENE 122
Query: 121 ---------------LTEVYLDTVGDAEKYQAKLSQRFP-SIKFVVSKKADSLYPVVSGA 164
LT + DA+++ +++ ++ AD P+V A
Sbjct: 123 NKDENENENEFSADPLTGLCDACDTDADRFARRVTDACTLELELDARHGADENSPIVGAA 182
Query: 165 SIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGDHKHIIF---------GFPSLVRFSW 215
SIVAKV RD + ET + + GSGYP D F P + R SW
Sbjct: 183 SIVAKVARDAHV------ETIADEFGSVGSGYPSDPTTREFLERYVDEHGELPPVARASW 236
Query: 216 GTC 218
TC
Sbjct: 237 ATC 239
>gi|433592396|ref|YP_007281892.1| ribonuclease H, mammalian HI/archaeal HII subfamily [Natrinema
pellirubrum DSM 15624]
gi|448333742|ref|ZP_21522931.1| ribonuclease HII [Natrinema pellirubrum DSM 15624]
gi|433307176|gb|AGB32988.1| ribonuclease H, mammalian HI/archaeal HII subfamily [Natrinema
pellirubrum DSM 15624]
gi|445621621|gb|ELY75092.1| ribonuclease HII [Natrinema pellirubrum DSM 15624]
Length = 223
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 86/215 (40%), Gaps = 22/215 (10%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVG 76
G+DEAG+GP LG M ++C DSK L E+REEL L+ +D +
Sbjct: 3 FGVDEAGKGPALGSMFAAAVHCEAPDDLPD---GIRDSKRLSPERREELAATLRDDDRIA 59
Query: 77 WAVDIIDPRELSAKMLNKNKINLNEISH--DSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
V I P + + N + + + + A R + + + DA++
Sbjct: 60 IGVAEITPARIDDPETDMNSLAVAAHAEAIEGAFADRARDASADEQFSGLCDACDTDADR 119
Query: 135 YQAKLSQRFP--SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF 192
+ +++ P ++ AD +V AS+VAKV RD + E +
Sbjct: 120 FARRVADACPLEAVSIDARHGADDESTLVGAASVVAKVERDAHVAALADE------YGEI 173
Query: 193 GSGYPGDHKHIIF---------GFPSLVRFSWGTC 218
GSGYPGD F P R SW TC
Sbjct: 174 GSGYPGDSTTREFLADYVDEHGDLPPFARASWSTC 208
>gi|427429623|ref|ZP_18919610.1| Ribonuclease HII [Caenispirillum salinarum AK4]
gi|425879860|gb|EKV28561.1| Ribonuclease HII [Caenispirillum salinarum AK4]
Length = 204
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 63/222 (28%), Positives = 96/222 (43%), Gaps = 31/222 (13%)
Query: 9 KWASNPCIMGIDEAGRGPVLGPMVYGCLYC--PCSYQQTLATLNFADSKTLKEEKREELF 66
+WA + GIDEAGRGP+ GP+V + C + LN DSK L KREEL
Sbjct: 7 EWAETGVVCGIDEAGRGPLAGPVVAAAVILDRACVPDTLVDGLN--DSKKLTASKREEL- 63
Query: 67 EDLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYL 126
L V ++ G AV I ++ A++ N + ++ D A G + R +++ ++
Sbjct: 64 --LTVLETCGAAVIGIGQADV-AEIDTHNILRATHMAMDRACGALGRAVDVALV------ 114
Query: 127 DTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAE 186
+ Q +++ VV D L ++ ASIVAKVTRDR + +
Sbjct: 115 ------DGNQPPALSLDCAVRTVVG--GDGLSLSIAAASIVAKVTRDRIMAALAVDHPHY 166
Query: 187 NMHRNFGSGYPGDHKHIIFGFPSLVRFSWGTCTSHFKDIVEV 228
RN G G +H+ + G C H + V
Sbjct: 167 GWERNAGYGT-AEHRTAM--------LEHGVCVHHRRSFAPV 199
>gi|335045947|ref|ZP_08538970.1| ribonuclease HII [Oribacterium sp. oral taxon 108 str. F0425]
gi|333759733|gb|EGL37290.1| ribonuclease HII [Oribacterium sp. oral taxon 108 str. F0425]
Length = 214
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/229 (27%), Positives = 104/229 (45%), Gaps = 58/229 (25%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I G+DEAGRGP+ GP+V C P Y LN DSK + E++RE LFEDL+ +++
Sbjct: 29 IAGVDEAGRGPLAGPVVAACAVIPLDY--PFYYLN--DSKKMSEKRRESLFEDLQ-KEAI 83
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
+ + I+ P + ++IN+ + ++ E + + D EK+
Sbjct: 84 AFGIGIVSPERI-------DEINILQATY------------------EAMREALKDMEKH 118
Query: 136 QAKLSQR--------FPSI----KFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW--IF 181
+ LS + P I K +V A SL ++ AS++AKVTRD + + +
Sbjct: 119 FS-LSPKILLNDAVTIPGISIPQKAIVHGDAKSL--SIAAASVLAKVTRDHIMLKYDEQY 175
Query: 182 EETAENMHRNFGSGYPGDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLW 230
E H+ +G+ H+ I + G C H + ++ L+
Sbjct: 176 PEYGFKQHKGYGTKV---HREAI--------LTHGPCPIHRRSFLKNLY 213
>gi|66817316|ref|XP_642511.1| hypothetical protein DDB_G0277705 [Dictyostelium discoideum AX4]
gi|60470610|gb|EAL68588.1| hypothetical protein DDB_G0277705 [Dictyostelium discoideum AX4]
Length = 507
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 100/214 (46%), Gaps = 25/214 (11%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVG 76
+ +DEAG+G +LGP+ C+ ++ L ++ DSK L ++RE L+ D+ + ++
Sbjct: 137 ISMDEAGKGALLGPLFISCVVLDDESEKYLKSMGVTDSKKLSPKRREYLY-DIIIEHALY 195
Query: 77 WAVDIIDPRELSAK----MLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
+ I+ ++ + +N+ + NL +I + + I++ + ++T
Sbjct: 196 YQTIILTSEKIDQRRELHTMNQIETNLFYQLIKDSINNLPKNQQCKIIIDSIEMNT---- 251
Query: 133 EKYQAKLSQRFPSIKFVV--SKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHR 190
+KY FP + + KAD + V ASI+AKV RDR W+ ++ N
Sbjct: 252 QKYSQPFKMEFPPPLYQIYCETKADHKFISVGAASIIAKVERDR----WM-KQLETNTSH 306
Query: 191 NFGSGYPGDHKHI---------IFGFPSLVRFSW 215
GSGYP D I + +P+ +R SW
Sbjct: 307 IIGSGYPSDPLTISYVNNFFKKYYVYPNSMRKSW 340
>gi|326204815|ref|ZP_08194669.1| Ribonuclease H [Clostridium papyrosolvens DSM 2782]
gi|325985027|gb|EGD45869.1| Ribonuclease H [Clostridium papyrosolvens DSM 2782]
Length = 255
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/205 (30%), Positives = 100/205 (48%), Gaps = 34/205 (16%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I G+DEAGRGP+ GP+V + P + L DSK L E +RE+LF+++K ++
Sbjct: 74 IAGVDEAGRGPLAGPVVAAAVVLP----KGLTIEGVNDSKKLSEAQREKLFDEIK-EKAL 128
Query: 76 GWAVDIIDPREL-SAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
+ + ++D + + +LN K+ + E A+ + + + ILL V LD +
Sbjct: 129 SYGISVVDEKYIDEVNILNATKMAMTE-----ALNRLDPIADC-ILLDAVSLDNIS---- 178
Query: 135 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGS 194
+++ P I K DSL ++ ASI+AKVTRDR L + + + G
Sbjct: 179 -----TKQVPII------KGDSLSLSIAAASILAKVTRDRLLMEYDAKYPQYGFAAHKGY 227
Query: 195 GYPGDHKHII----FGFPSLVRFSW 215
G P +HI FG + R S+
Sbjct: 228 GTP---QHISAIKKFGLCPIHRLSF 249
>gi|296504332|ref|YP_003666032.1| ribonuclease HII [Bacillus thuringiensis BMB171]
gi|296325384|gb|ADH08312.1| ribonuclease HII [Bacillus thuringiensis BMB171]
Length = 257
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 87/181 (48%), Gaps = 28/181 (15%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDE GRGP+ GP+V + P + + LN DSK L E KRE ++++KV ++
Sbjct: 74 IAGIDEVGRGPLAGPVVTAAVVLPEDF--YIPGLN--DSKKLSEAKRERFYDEIKVQ-AI 128
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
V I+ P+ + + IN+ + + + ++ V N+ + +D +
Sbjct: 129 AIGVGIVSPQII-------DDINIYQATKQA---MLDAVANLSCTPQHLLIDAM------ 172
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLR--GWIFEETAENMHRNFG 193
KL P + K D+ +S ASI+AKVTRDR ++ G + E H +G
Sbjct: 173 --KLPTPIPQTSII---KGDAKSVSISAASIIAKVTRDRMMKELGEKYPEYGFEQHMGYG 227
Query: 194 S 194
+
Sbjct: 228 T 228
>gi|355677531|ref|ZP_09060434.1| ribonuclease HII [Clostridium citroniae WAL-17108]
gi|354813096|gb|EHE97709.1| ribonuclease HII [Clostridium citroniae WAL-17108]
Length = 219
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/222 (26%), Positives = 101/222 (45%), Gaps = 40/222 (18%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+ GIDEAGRGP+ GP+ G + P + L DSK L E++REELFE++K +
Sbjct: 34 VCGIDEAGRGPLAGPVAAGAVILP----KDCRILYLNDSKKLSEKRREELFEEIK-EKAA 88
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRV-LNIGILLTEVYLDTVGDAEK 134
W+V I+ P + + IN+ + ++++ + R+ + +LL DA
Sbjct: 89 AWSVGIVSPARI-------DDINILQATYEAMRDAVGRLGVTPDVLLN--------DAVT 133
Query: 135 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGS 194
++ P I K D+ ++ AS++AKVTRD + + E M +G
Sbjct: 134 IPGLPMKQVPII------KGDAKSLSIAAASVLAKVTRDHMMAEY------EEMFPGYGF 181
Query: 195 GYPGDHKHIIFGFPSLVRF--SWGTCTSHFKDIVEVLWESDE 234
KH +G + ++ G C H + + E ++
Sbjct: 182 A-----KHKGYGTAAHIQAIRELGPCPIHRRSFIRNFVEQED 218
>gi|55379775|ref|YP_137625.1| ribonuclease HII [Haloarcula marismortui ATCC 43049]
gi|74516083|sp|Q5UXT4.1|RNH2_HALMA RecName: Full=Ribonuclease HII; Short=RNase HII
gi|55232500|gb|AAV47919.1| RNAase HII [Haloarcula marismortui ATCC 43049]
Length = 211
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 97/212 (45%), Gaps = 30/212 (14%)
Query: 18 GIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVN-DSVG 76
G+DEAG+GPVLG M DSK ++ E+RE L ++++ + D+VG
Sbjct: 4 GVDEAGKGPVLGSM----FAAAVRADPAALPGGVGDSKDIRPERRERLAKEIRESADAVG 59
Query: 77 WAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQ 136
A E+S + ++ ++ ++N ++ + ++ V G+ T DT DA ++
Sbjct: 60 IA-------EISVERIDADETDMNTLTVEGQAEALSAVARDGLSGTVDAGDT--DAARFG 110
Query: 137 AKLSQRFPS-IKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 195
+++ + + AD +V ASI+AKV RD + E AE + + GSG
Sbjct: 111 RRVADAVDTDVAVTAEHGADETDSLVGAASIIAKVARDT----HVAELAAE--YGDVGSG 164
Query: 196 YPGDHKHIIF---------GFPSLVRFSWGTC 218
YP D F P+ R SW TC
Sbjct: 165 YPSDPTTRTFLADYVDRHGELPACARRSWSTC 196
>gi|313125351|ref|YP_004035615.1| rnase hii [Halogeometricum borinquense DSM 11551]
gi|448287053|ref|ZP_21478269.1| ribonuclease HII [Halogeometricum borinquense DSM 11551]
gi|312291716|gb|ADQ66176.1| RNase HII [Halogeometricum borinquense DSM 11551]
gi|445572799|gb|ELY27329.1| ribonuclease HII [Halogeometricum borinquense DSM 11551]
Length = 224
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 66/221 (29%), Positives = 87/221 (39%), Gaps = 31/221 (14%)
Query: 13 NPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVN 72
+P +G DEAG+GPVLGPMV + DSK L +REE+ + L+
Sbjct: 5 SPVRIGSDEAGKGPVLGPMVAAAV----RAPADALPDGIDDSKRLTSAQREEIDQTLRGR 60
Query: 73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
D V V IDP + + N + + A EV D GD
Sbjct: 61 DDVTVGVATIDPVRIDDPTTDMNSLTVAAHVAAVAAVAQD--------ADEVVTD-AGDV 111
Query: 133 E------KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAE 186
+ + + + + V +AD YP V AS+VAKV RD TL I E +
Sbjct: 112 DESRFGRRVRTGVGDEGTDVTVVSEHRADETYPHVGAASVVAKVRRD-TLMETIGERYED 170
Query: 187 NMHRNFGSGYPGDHKHIIF---------GFPSLVRFSWGTC 218
+ GSGYP D F P R SW TC
Sbjct: 171 --YGPVGSGYPSDPTTREFLRTYVSETGELPDCARASWATC 209
>gi|326389492|ref|ZP_08211059.1| Ribonuclease H [Thermoanaerobacter ethanolicus JW 200]
gi|325994497|gb|EGD52922.1| Ribonuclease H [Thermoanaerobacter ethanolicus JW 200]
Length = 242
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 64/213 (30%), Positives = 102/213 (47%), Gaps = 36/213 (16%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I G+DEAGRGP++GP+V C+ P + + DSK L EEKRE L E +K ++
Sbjct: 60 IAGVDEAGRGPLVGPIVAACVILP----KEVFIPEINDSKKLSEEKREVLSEVIK-KVAI 114
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLN-IGILLTEVYLDTVGDAEK 134
+A+ I+D E+ +KIN+ ++ + I+++ I LL + T+ E
Sbjct: 115 SYAIGIVDCEEI-------DKINILNATYKAMQIAISKIQQKIDYLLVDAI--TIPQIEI 165
Query: 135 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGS 194
Q + K DS ++ ASI+AKV RD+ ++ + N +N
Sbjct: 166 NQKAIV------------KGDSKSISIAAASILAKVERDKIMKEYHKIYPQYNFEKN--K 211
Query: 195 GYPGDHKHIIFGFPSLVRFSWGTCTSHFKDIVE 227
GY G +HI +L + +G C H K +E
Sbjct: 212 GY-GTKEHI----EALKK--YGPCPIHRKTFIE 237
>gi|289578443|ref|YP_003477070.1| ribonuclease H [Thermoanaerobacter italicus Ab9]
gi|289528156|gb|ADD02508.1| Ribonuclease H [Thermoanaerobacter italicus Ab9]
Length = 242
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 64/213 (30%), Positives = 102/213 (47%), Gaps = 36/213 (16%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I G+DEAGRGP++GP+V C+ P + + DSK L EEKRE L E +K ++
Sbjct: 60 IAGVDEAGRGPLVGPVVAACVILP----KNVFIPEINDSKKLSEEKREVLSEVIK-KVAI 114
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLN-IGILLTEVYLDTVGDAEK 134
+A+ I+D E+ +KIN+ ++ + I+++ I LL + T+ E
Sbjct: 115 SYAIGIVDCEEI-------DKINILNATYKAMQIAISKIQQKIDYLLVDAI--TIPQIEI 165
Query: 135 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGS 194
Q + K DS ++ ASI+AKV RD+ ++ + N +N
Sbjct: 166 NQKAII------------KGDSKSISIAAASILAKVERDKIMKEYHKIYPQYNFEKN--K 211
Query: 195 GYPGDHKHIIFGFPSLVRFSWGTCTSHFKDIVE 227
GY G +HI +L + +G C H K +E
Sbjct: 212 GY-GTKEHI----EALKK--YGPCPIHRKTFIE 237
>gi|167040339|ref|YP_001663324.1| ribonuclease HII [Thermoanaerobacter sp. X514]
gi|300914423|ref|ZP_07131739.1| Ribonuclease H [Thermoanaerobacter sp. X561]
gi|307724341|ref|YP_003904092.1| Ribonuclease H [Thermoanaerobacter sp. X513]
gi|166854579|gb|ABY92988.1| Ribonuclease H [Thermoanaerobacter sp. X514]
gi|300889358|gb|EFK84504.1| Ribonuclease H [Thermoanaerobacter sp. X561]
gi|307581402|gb|ADN54801.1| Ribonuclease H [Thermoanaerobacter sp. X513]
Length = 242
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 64/213 (30%), Positives = 102/213 (47%), Gaps = 36/213 (16%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I G+DEAGRGP++GP+V C+ P + + DSK L EEKRE L E +K ++
Sbjct: 60 IAGVDEAGRGPLVGPVVAACVILP----KEVFIPEINDSKKLSEEKREVLSEVIK-KVAI 114
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLN-IGILLTEVYLDTVGDAEK 134
+A+ I+D E+ +KIN+ ++ + I+++ I LL + T+ E
Sbjct: 115 SYAIGIVDCEEI-------DKINILNATYKAMQIAISKIQQKIDYLLVDAI--TIPQIEI 165
Query: 135 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGS 194
Q + K DS ++ ASI+AKV RD+ ++ + N +N
Sbjct: 166 NQKAIV------------KGDSKSISIAAASILAKVERDKIMKEYHKIYPQYNFEKN--K 211
Query: 195 GYPGDHKHIIFGFPSLVRFSWGTCTSHFKDIVE 227
GY G +HI +L + +G C H K +E
Sbjct: 212 GY-GTKEHI----EALKK--YGPCPIHRKTFIE 237
>gi|392940897|ref|ZP_10306541.1| ribonuclease HII [Thermoanaerobacter siderophilus SR4]
gi|392292647|gb|EIW01091.1| ribonuclease HII [Thermoanaerobacter siderophilus SR4]
Length = 242
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 64/213 (30%), Positives = 102/213 (47%), Gaps = 36/213 (16%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I G+DEAGRGP++GP+V C+ P + + DSK L EEKRE L E +K ++
Sbjct: 60 IAGVDEAGRGPLVGPVVAACVILP----KEVFIPEINDSKKLSEEKREVLSEIIK-KVAI 114
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLN-IGILLTEVYLDTVGDAEK 134
+A+ I+D E+ +KIN+ ++ + I+++ I LL + T+ E
Sbjct: 115 SYAIGIVDCEEI-------DKINILNATYKAMQIAISKIQQKIDYLLVDAI--TIPQIEI 165
Query: 135 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGS 194
Q + K DS ++ ASI+AKV RD+ ++ + N +N
Sbjct: 166 NQKAIV------------KGDSKSISIAAASILAKVERDKIMKEYHKIYPQYNFEKN--K 211
Query: 195 GYPGDHKHIIFGFPSLVRFSWGTCTSHFKDIVE 227
GY G +HI +L + +G C H K +E
Sbjct: 212 GY-GTKEHI----EALKK--YGPCPIHRKTFIE 237
>gi|167037678|ref|YP_001665256.1| ribonuclease HII [Thermoanaerobacter pseudethanolicus ATCC 33223]
gi|320116093|ref|YP_004186252.1| Ribonuclease H [Thermoanaerobacter brockii subsp. finnii Ako-1]
gi|166856512|gb|ABY94920.1| Ribonuclease H [Thermoanaerobacter pseudethanolicus ATCC 33223]
gi|319929184|gb|ADV79869.1| Ribonuclease H [Thermoanaerobacter brockii subsp. finnii Ako-1]
Length = 242
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 64/213 (30%), Positives = 102/213 (47%), Gaps = 36/213 (16%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I G+DEAGRGP++GP+V C+ P + + DSK L EEKRE L E +K ++
Sbjct: 60 IAGVDEAGRGPLVGPVVAACVILP----KEVFIPEINDSKKLSEEKREVLSEVIK-KVAI 114
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLN-IGILLTEVYLDTVGDAEK 134
+A+ I+D E+ +KIN+ ++ + I+++ I LL + T+ E
Sbjct: 115 SYAIGIVDCEEI-------DKINILNATYKAMQIAISKIQQKIDYLLVDAI--TIPQIEI 165
Query: 135 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGS 194
Q + K DS ++ ASI+AKV RD+ ++ + N +N
Sbjct: 166 NQKAIV------------KGDSKSISIAAASILAKVERDKIMKEYHKIYPQYNFEKN--K 211
Query: 195 GYPGDHKHIIFGFPSLVRFSWGTCTSHFKDIVE 227
GY G +HI +L + +G C H K +E
Sbjct: 212 GY-GTKEHI----EALKK--YGPCPIHRKTFIE 237
>gi|301103372|ref|XP_002900772.1| ribonuclease HII [Phytophthora infestans T30-4]
gi|262101527|gb|EEY59579.1| ribonuclease HII [Phytophthora infestans T30-4]
Length = 249
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 93/189 (49%), Gaps = 25/189 (13%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
++G+DEAGRGP+ GP+V + P T+A ++ DSK + E +RE LFE L + +
Sbjct: 46 TVIGVDEAGRGPLAGPVVAAACHVPLDV--TIAGID--DSKKILEPQREALFELLTSHPN 101
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
+ +AV + P+ + + IN+ + S +S + V + ++ + D K
Sbjct: 102 ITYAVHVNSPQRI-------DDINILQASLESMTKSVNEVAQQLQQKDKTFV--LVDGNK 152
Query: 135 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW--IFEETAENMHRNF 192
L P+ V K DS ++ ASI+AKVTRDR +R + F + H+
Sbjct: 153 LPPTLE--LPAEAVV---KGDSKVYSIAAASIIAKVTRDRLMREYDVKFPQYGLAQHK-- 205
Query: 193 GSGYPG-DH 200
GYP DH
Sbjct: 206 --GYPTRDH 212
>gi|260437013|ref|ZP_05790829.1| ribonuclease HII [Butyrivibrio crossotus DSM 2876]
gi|292810322|gb|EFF69527.1| ribonuclease HII [Butyrivibrio crossotus DSM 2876]
Length = 210
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 89/183 (48%), Gaps = 29/183 (15%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDEAGRGP+ GP+V + P Y L DSK L E KREE+++++ +V
Sbjct: 30 ICGIDEAGRGPLCGPVVAAAVILPDEYN----ILYINDSKKLSETKREEVYKEID-KYAV 84
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRV-LNIGILLTEVYLDTVGDAEK 134
+ V I+ P + ++IN+ + ++++ I ++ + ILL + + D
Sbjct: 85 AYGVGIVSPERI-------DEINILQATYEAMRTAIHKLSVTPDILLNDAVTIPMVD--- 134
Query: 135 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW--IFEETAENMHRNF 192
IK V K D+ ++ ASIVAKVTRD + + ++ E H+ +
Sbjct: 135 -----------IKQVPIIKGDAKSQSIAAASIVAKVTRDHLMEEYDKLYPEYGFAKHKGY 183
Query: 193 GSG 195
G+
Sbjct: 184 GTA 186
>gi|228954113|ref|ZP_04116142.1| Ribonuclease [Bacillus thuringiensis serovar kurstaki str. T03a001]
gi|229081092|ref|ZP_04213602.1| Ribonuclease [Bacillus cereus Rock4-2]
gi|365159386|ref|ZP_09355567.1| ribonuclease HII [Bacillus sp. 7_6_55CFAA_CT2]
gi|423425973|ref|ZP_17403004.1| ribonuclease HII [Bacillus cereus BAG3X2-2]
gi|423437292|ref|ZP_17414273.1| ribonuclease HII [Bacillus cereus BAG4X12-1]
gi|423503486|ref|ZP_17480078.1| ribonuclease HII [Bacillus cereus HD73]
gi|449090778|ref|YP_007423219.1| Ribonuclease [Bacillus thuringiensis serovar kurstaki str. HD73]
gi|228702136|gb|EEL54612.1| Ribonuclease [Bacillus cereus Rock4-2]
gi|228805679|gb|EEM52269.1| Ribonuclease [Bacillus thuringiensis serovar kurstaki str. T03a001]
gi|363625384|gb|EHL76425.1| ribonuclease HII [Bacillus sp. 7_6_55CFAA_CT2]
gi|401110720|gb|EJQ18619.1| ribonuclease HII [Bacillus cereus BAG3X2-2]
gi|401120447|gb|EJQ28243.1| ribonuclease HII [Bacillus cereus BAG4X12-1]
gi|402458840|gb|EJV90580.1| ribonuclease HII [Bacillus cereus HD73]
gi|449024535|gb|AGE79698.1| Ribonuclease [Bacillus thuringiensis serovar kurstaki str. HD73]
Length = 257
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 87/181 (48%), Gaps = 28/181 (15%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDE GRGP+ GP+V + P + + LN DSK L E KRE ++++KV ++
Sbjct: 74 IAGIDEVGRGPLAGPVVTAAVVLPEDF--YIPGLN--DSKKLSEAKRERFYDEIKVQ-AI 128
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
V I+ P+ + + IN+ + + + ++ V N+ + +D +
Sbjct: 129 AIGVGIVSPQVI-------DDINIYQATKQA---MLDAVANLSCTPQHLLIDAM------ 172
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLR--GWIFEETAENMHRNFG 193
KL P + K D+ +S ASI+AKVTRDR ++ G + + H +G
Sbjct: 173 --KLPTPIPQTSII---KGDAKSVSISAASIIAKVTRDRMMKELGEKYPQYGFEQHMGYG 227
Query: 194 S 194
+
Sbjct: 228 T 228
>gi|300691590|ref|YP_003752585.1| ribonuclease HII (RNase HII) [Ralstonia solanacearum PSI07]
gi|299078650|emb|CBJ51308.1| Ribonuclease HII (RNase HII) [Ralstonia solanacearum PSI07]
Length = 242
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 87/183 (47%), Gaps = 28/183 (15%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+ G+DEAGRGP+ GP+ + + ++ + L ADSK L +KRE L++++ V ++
Sbjct: 35 LCGVDEAGRGPLAGPVTAAAVVL--NPRKPIKGL--ADSKVLTAKKREALYDEI-VEKAL 89
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
W V A + ++IN+ + + + V G+L V +D
Sbjct: 90 AWHV-------AEATVEEIDRINILHATMLAMQRAVQGVAAQGVLPDLVQVD-------- 134
Query: 136 QAKLSQRFPSIKFVVSK--KADSLYPVVSGASIVAKVTRDRTLRGW--IFEETAENMHRN 191
R P + F V K D+L P +S ASI+AKVTRDR L F ++H
Sbjct: 135 ----GNRCPQVAFAVEAIVKGDALVPAISAASILAKVTRDRQLAALHIAFPHYGFDVHAG 190
Query: 192 FGS 194
+G+
Sbjct: 191 YGT 193
>gi|229071335|ref|ZP_04204558.1| Ribonuclease [Bacillus cereus F65185]
gi|229180113|ref|ZP_04307457.1| Ribonuclease [Bacillus cereus 172560W]
gi|228603322|gb|EEK60799.1| Ribonuclease [Bacillus cereus 172560W]
gi|228711789|gb|EEL63741.1| Ribonuclease [Bacillus cereus F65185]
Length = 254
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 87/181 (48%), Gaps = 28/181 (15%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDE GRGP+ GP+V + P + + LN DSK L E KRE ++++KV ++
Sbjct: 71 IAGIDEVGRGPLAGPVVTAAVVLPEDF--YIPGLN--DSKKLSEAKRERFYDEIKVQ-AI 125
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
V I+ P+ + + IN+ + + + ++ V N+ + +D +
Sbjct: 126 AIGVGIVSPQVI-------DDINIYQATKQA---MLDAVANLSCTPQHLLIDAM------ 169
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLR--GWIFEETAENMHRNFG 193
KL P + K D+ +S ASI+AKVTRDR ++ G + + H +G
Sbjct: 170 --KLPTPIPQTSII---KGDAKSVSISAASIIAKVTRDRMMKELGEKYPQYGFEQHMGYG 224
Query: 194 S 194
+
Sbjct: 225 T 225
>gi|254479478|ref|ZP_05092803.1| ribonuclease HII [Carboxydibrachium pacificum DSM 12653]
gi|214034582|gb|EEB75331.1| ribonuclease HII [Carboxydibrachium pacificum DSM 12653]
Length = 236
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 88/182 (48%), Gaps = 29/182 (15%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I G+DEAGRGP++GP+V C+ P + + DSK L EEKRE+L E +K +++
Sbjct: 54 IAGVDEAGRGPLVGPVVAACVILP----KEIFIPEINDSKKLPEEKREKLAEVIK-KEAI 108
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
+ + I+D RE+ ++IN +LN + + + V + +Y
Sbjct: 109 SYGIGIVDCREI-------DEIN---------------ILNATLKAMKKAIFEVKEKIEY 146
Query: 136 QAKLSQRFP--SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG 193
+ P IK + K DS ++ ASI+AKV RDR +R + N +N G
Sbjct: 147 LLVDAISIPDMPIKQLPIVKGDSKSISIAAASILAKVERDRIMREYHKLYPQYNFAKNKG 206
Query: 194 SG 195
G
Sbjct: 207 YG 208
>gi|451344262|ref|ZP_21913322.1| hypothetical protein HMPREF9943_01547 [Eggerthia catenaformis OT
569 = DSM 20559]
gi|449336976|gb|EMD16144.1| hypothetical protein HMPREF9943_01547 [Eggerthia catenaformis OT
569 = DSM 20559]
Length = 211
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 59/207 (28%), Positives = 100/207 (48%), Gaps = 35/207 (16%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
I+G+DEAGRGP+ GP+ G + P +Y DSK L +KREEL E +K N +
Sbjct: 20 TIIGLDEAGRGPMAGPLTVGGVIFPKNYYDK----RINDSKQLTAKKREELSEIIKAN-A 74
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLD-TVGDAE 133
+ + V++I E+ +K+N+ + S + + +I + ++ D + DA
Sbjct: 75 LAYKVEVISVEEV-------DKLNVYQASREGMLRIINTI--------AIHPDYALTDA- 118
Query: 134 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW--IFEETAENMHRN 191
L+ P + K DSL ++ ASI+AKVTRD + + ++ E H+
Sbjct: 119 ---MPLNNYIPHTSII---KGDSLSLSIAAASILAKVTRDHIMEEYAKLYPEYGFEKHKG 172
Query: 192 FGSGYPGDHKHII--FGFPSLVRFSWG 216
+ + HK + +G + R S+G
Sbjct: 173 YVT---KAHKEALLKYGVTPIHRKSFG 196
>gi|344169900|emb|CCA82269.1| ribonuclease HII (RNase HII) [blood disease bacterium R229]
Length = 236
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 82/183 (44%), Gaps = 28/183 (15%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+ G+DEAGRGP+ GP+ + ADSK L +KRE L++++ V ++
Sbjct: 29 LCGVDEAGRGPLAGPVTAAAVV----LNPRKPIKGLADSKVLTAKKREALYDEI-VEKAL 83
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
W V A + ++IN+ + + + V G+L V +D
Sbjct: 84 AWHV-------AEATVEEIDRINILHATMLAMQRAVQGVAAQGVLPDLVQVD-------- 128
Query: 136 QAKLSQRFPSIKFVVSK--KADSLYPVVSGASIVAKVTRDRTLRGW--IFEETAENMHRN 191
R P + F V K D+L P +S ASI+AKVTRDR L F ++H
Sbjct: 129 ----GNRCPQVAFAVEAIVKGDALVPAISAASILAKVTRDRQLAALHIAFPHYGFDVHAG 184
Query: 192 FGS 194
+G+
Sbjct: 185 YGT 187
>gi|354610229|ref|ZP_09028185.1| ribonuclease HII [Halobacterium sp. DL1]
gi|353195049|gb|EHB60551.1| ribonuclease HII [Halobacterium sp. DL1]
Length = 210
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 94/212 (44%), Gaps = 31/212 (14%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYC-PCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
G+DEAG+GPVLG M + P ADSK L E+R+EL E ++ +V
Sbjct: 3 FGVDEAGKGPVLGSMFAAAVAGDPADLPD-----GVADSKRLAPERRDELDERIRARCAV 57
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
G A E+ ++ + ++N ++ + +++V + G L V V DAE++
Sbjct: 58 GVA-------EIPVARIDDPETDMNALTVAAQADALSQVASDG-LAGHVDAGDV-DAERF 108
Query: 136 QAKLSQRFPS-IKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGS 194
+++ + + AD Y V+ ASIVAKV RD + E A H + GS
Sbjct: 109 GRRVADAVTADVDITAEHGADDEYDFVAAASIVAKVARDSHV-----AELATG-HGDVGS 162
Query: 195 GYPGDHKHIIF---------GFPSLVRFSWGT 217
GYP D F P R SW T
Sbjct: 163 GYPSDPTTREFLSEYVREHGCLPDCARESWQT 194
>gi|395217031|ref|ZP_10401513.1| ribonuclease HII [Pontibacter sp. BAB1700]
gi|394455164|gb|EJF09694.1| ribonuclease HII [Pontibacter sp. BAB1700]
Length = 202
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 60/204 (29%), Positives = 99/204 (48%), Gaps = 27/204 (13%)
Query: 5 AALPKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREE 64
A LP ++ GIDEAGRG + GP+V + P Y L LN DSK L ++R +
Sbjct: 2 ALLPNYSGYTLEAGIDEAGRGCLAGPVVAAAVILPPDYSHAL--LN--DSKQLSHKQRLQ 57
Query: 65 LFEDLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEV 124
L D+ V D+V WA+ P E+ ++IN+ + ++ + + R + G+ L
Sbjct: 58 LRVDI-VRDAVAWAIGEASPAEI-------DQINILQATYLA----MHRAIE-GLALEPE 104
Query: 125 YLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEET 184
YL + D +++A + +++ K D Y ++ AS++AK RD + E +
Sbjct: 105 YL--IVDGNRFKA-----YGALRHTCVVKGDGRYLSIAAASVLAKTHRDELMCTLAKEHS 157
Query: 185 AENMHRNFGSGYPG-DHKHIIFGF 207
RN +GYP +H+ I F
Sbjct: 158 HYGWERN--AGYPTKEHRTSIAQF 179
>gi|371777738|ref|ZP_09484060.1| ribonuclease HII [Anaerophaga sp. HS1]
Length = 211
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 98/209 (46%), Gaps = 31/209 (14%)
Query: 11 ASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLK 70
++ P + G DEAGRG + GP+V + P + L DSK L E++R +L E ++
Sbjct: 18 STGPTVAGCDEAGRGCLAGPVVAAAVILPEDFNHPL----LNDSKQLTEKRRNQLREIIE 73
Query: 71 VNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGIL-LTEVYLDTV 129
+++ WAV ++D RE+ +KIN+ S + +++ I L + +
Sbjct: 74 -KEAIAWAVAMVDNREI-------DKINILNAS--------IKAMHLAIAQLNPAPISLL 117
Query: 130 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH 189
D ++ + ++K K D+ Y ++ AS++AK RD+ ++ E
Sbjct: 118 VDGNRFHP-----YKNLKHQCIVKGDATYQCIAAASVLAKTHRDQWMKSKHSEYPCYGWD 172
Query: 190 RNFGSGYPG-DHKHII--FGFPSLVRFSW 215
+N GYP H+ I FG L R S+
Sbjct: 173 QN--KGYPTKKHRQAIEQFGVSPLHRISF 199
>gi|197303275|ref|ZP_03168316.1| hypothetical protein RUMLAC_01998 [Ruminococcus lactaris ATCC
29176]
gi|197297701|gb|EDY32260.1| ribonuclease HII [Ruminococcus lactaris ATCC 29176]
Length = 252
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 95/195 (48%), Gaps = 41/195 (21%)
Query: 9 KWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFED 68
K++ CI GIDEAGRGP+ GP+V G + P + L DSK L +REEL+++
Sbjct: 65 KYSQYRCICGIDEAGRGPLAGPVVAGAVILPADCE----ILYLNDSKKLSAARREELYDE 120
Query: 69 LKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDS---AIGLITR----VLNIGILL 121
+ + +V + + P + ++IN+ + ++++ A+ ++R +LN + +
Sbjct: 121 I-MEKAVATGIGMASPARI-------DEINILQATYEAMREAVSKLSREPDLLLNDAVTI 172
Query: 122 TEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW-- 179
E+ + V P I K D+ ++ ASI+AKVTRDR + +
Sbjct: 173 PEMTIMQV--------------PII------KGDAKSVSIAAASILAKVTRDRLMIEYDK 212
Query: 180 IFEETAENMHRNFGS 194
I E H+ +GS
Sbjct: 213 ILPEYGFAGHKGYGS 227
>gi|448299120|ref|ZP_21489133.1| ribonuclease HII [Natronorubrum tibetense GA33]
gi|445588654|gb|ELY42896.1| ribonuclease HII [Natronorubrum tibetense GA33]
Length = 231
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 66/230 (28%), Positives = 98/230 (42%), Gaps = 44/230 (19%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVG 76
G+DEAG+GPV G M + T+ ADSK L E+REEL ++ +D +
Sbjct: 3 FGVDEAGKGPVFGSMFAASVAL---EDPTILPNGIADSKRLAPERREELAATIREDDRIR 59
Query: 77 WAVDIIDPRELSAKMLNKNKINLNEI---SHDSAIGLITRVLNIGILLTEVY------LD 127
V E++ ++ + ++N + +H AIG L+ L ++ D
Sbjct: 60 VGV-----AEITTARIDDPETDMNSLAVAAHAEAIGSALEGLDDNALESDSIAGLCDACD 114
Query: 128 TVGDAEKYQAKLSQ--------RFPSIKFVVSKK--ADSLYPVVSGASIVAKVTRDRTLR 177
T DA+++ ++SQ P+ + + AD +V ASIVAKV RD +
Sbjct: 115 T--DADRFARRVSQACSAVSSLEAPTDALEIDARHGADDDSKIVGAASIVAKVERDAHV- 171
Query: 178 GWIFEETAENMHRNFGSGYPGDHKHIIF---------GFPSLVRFSWGTC 218
I EE + GSGYP D F P R SW TC
Sbjct: 172 AAIAEE-----YGPVGSGYPSDPNTREFLETYVDEHATLPPFARESWSTC 216
>gi|374724762|gb|EHR76842.1| ribonuclease HII [uncultured marine group II euryarchaeote]
Length = 242
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 90/191 (47%), Gaps = 17/191 (8%)
Query: 18 GIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVND-SVG 76
G+DEAGRGPV+GP+V G + P + L DSK L +KR + + G
Sbjct: 5 GVDEAGRGPVIGPLVVGAVAIPTADLPMLKEYGVRDSKDLTHKKRVAMADWFHEQARQRG 64
Query: 77 WAVDII--DPRELSAKMLNKNKINLNEIS-HDSAIGLITRVLNIGILLTEVYLDTVGDAE 133
W +I P + A +++ N +NL E+ A+ + + + G+ + D +A+
Sbjct: 65 WLHQVIVCPPPRIDAAVIH-NGLNLLEVELFAEALNPMRKEVEQGVQILNDACDV--NAQ 121
Query: 134 KYQAKLSQRFPSIKFVVS-----KKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENM 188
++ +++ R + S KAD+ + +V ASI+AKV RD I E +
Sbjct: 122 RFTDRIAARLTGWPWNQSSMTSEHKADTNHAIVGMASILAKVRRDE-----IIEALKVEI 176
Query: 189 HRNFGSGYPGD 199
GSGYP D
Sbjct: 177 GAPIGSGYPSD 187
>gi|218283550|ref|ZP_03489540.1| hypothetical protein EUBIFOR_02130 [Eubacterium biforme DSM 3989]
gi|218215818|gb|EEC89356.1| hypothetical protein EUBIFOR_02130 [Eubacterium biforme DSM 3989]
Length = 202
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 103/218 (47%), Gaps = 44/218 (20%)
Query: 10 WASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL 69
W N ++G+DEAGRGP+ GP++ + P Y L DSK L E+KRE LF+ +
Sbjct: 11 WDQNQSVLGMDEAGRGPIAGPLMVAGVIFPKGYHNEL----IDDSKKLSEKKREALFKTI 66
Query: 70 KVNDSVGWAVDIIDPRELSAKMLNK-NKINLNEISHDSAIGLITRVLNIGILLTEVYLDT 128
+ D++ + + ++D + + K + + + + EI++ + VL+ + L ++
Sbjct: 67 -IQDALYYQILVVDEKTIDKKNIYRATQEAMMEIANKAQCDF---VLSDAMPLPDI---- 118
Query: 129 VGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENM 188
+ +QA +V SL ++ ASI+AKVTRDR W+ + + M
Sbjct: 119 ---DKPFQA-----------IVKGDQKSL--SIAAASILAKVTRDR----WM--KKLDEM 156
Query: 189 HRNFG----SGYPGDHKHI----IFGFPSLVRFSWGTC 218
+ +G GYP HI +G R S+G
Sbjct: 157 YPQYGLAKHKGYPT-KAHIEALNQYGLQDFYRRSYGPV 193
>gi|229192006|ref|ZP_04318976.1| Ribonuclease [Bacillus cereus ATCC 10876]
gi|228591557|gb|EEK49406.1| Ribonuclease [Bacillus cereus ATCC 10876]
Length = 254
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 86/181 (47%), Gaps = 28/181 (15%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDE GRGP+ GP+V + P + + LN DSK L E KRE ++++KV ++
Sbjct: 71 IAGIDEVGRGPLAGPVVTAAVVLPEDF--YIPGLN--DSKKLSEAKRERFYDEIKVQ-AI 125
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
V I+ P + + IN+ + + + ++ V N+ + +D +
Sbjct: 126 AIGVGIVSPEVI-------DDINIYQATKQA---MLDAVANLSCTPQHLLIDAM------ 169
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLR--GWIFEETAENMHRNFG 193
KL P + K D+ +S ASI+AKVTRDR ++ G + + H +G
Sbjct: 170 --KLPTPIPQTSII---KGDAKSVSISAASIIAKVTRDRMMKELGEKYPQYGFEQHMGYG 224
Query: 194 S 194
+
Sbjct: 225 T 225
>gi|339499659|ref|YP_004697694.1| ribonuclease H [Spirochaeta caldaria DSM 7334]
gi|338834008|gb|AEJ19186.1| Ribonuclease H [Spirochaeta caldaria DSM 7334]
Length = 199
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 67/212 (31%), Positives = 97/212 (45%), Gaps = 27/212 (12%)
Query: 18 GIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGW 77
G+DEAGRGP+ GP+ + + LN DSK L E+KREE L V ++ W
Sbjct: 5 GLDEAGRGPLAGPVCAAAVILNEDF--PFEVLN--DSKKLSEKKREEA-RKLIVTQALAW 59
Query: 78 AVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQA 137
+ E+ + + + E ++D I + + + IL +E +D + Y
Sbjct: 60 GIGWASAAEIDTINILQASLLAMERAYDVMISTLKKS-DRAILCSEAVVDGL-----YAP 113
Query: 138 KLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLR--GWIFEETAENMHRNFGSG 195
L P V KAD+L P V ASI+AK RDR + GWI+ E H+ G
Sbjct: 114 HLP--VPCKAIV---KADALVPEVMAASILAKTARDRMMERYGWIYPEYGYEQHK----G 164
Query: 196 YPGD-HK-HIIFGFPSLVR---FSWGTCTSHF 222
YP H+ I+ PS ++ FS G S F
Sbjct: 165 YPTKLHRARIVLYGPSPIQRMSFSIGPEQSLF 196
>gi|386714316|ref|YP_006180639.1| ribonuclease HII [Halobacillus halophilus DSM 2266]
gi|384073872|emb|CCG45365.1| ribonuclease HII [Halobacillus halophilus DSM 2266]
Length = 254
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 62/205 (30%), Positives = 89/205 (43%), Gaps = 33/205 (16%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDEAGRGP+ GP+V + P Y DSK + KREE F+ LK +
Sbjct: 73 IAGIDEAGRGPLAGPVVAAAVILPEDYYLE----GLYDSKKIPLAKREEFFQSLKAHADC 128
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
G V I+ E+ N +++ A+ +T+V +L+ +YL+ + Y
Sbjct: 129 G--VGIVSNEEID----QHNIYQATKLAMKRAVMDLTQVPE-HLLIDAMYLEESEVPQTY 181
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 195
K QR SI + ASI+AKVTRDR + W + H G
Sbjct: 182 LVKGDQRSVSI---------------AAASIIAKVTRDRIMSEW--HDNYPMYHFRSNQG 224
Query: 196 YPGDHKHI----IFGFPSLVRFSWG 216
Y G +H+ +G L R S+
Sbjct: 225 Y-GTKEHLEALKTYGVSPLHRKSFA 248
>gi|163941575|ref|YP_001646459.1| ribonuclease HII [Bacillus weihenstephanensis KBAB4]
gi|423518527|ref|ZP_17495008.1| ribonuclease HII [Bacillus cereus HuA2-4]
gi|229564282|sp|A9VT75.1|RNH2_BACWK RecName: Full=Ribonuclease HII; Short=RNase HII
gi|163863772|gb|ABY44831.1| Ribonuclease H [Bacillus weihenstephanensis KBAB4]
gi|401160735|gb|EJQ68110.1| ribonuclease HII [Bacillus cereus HuA2-4]
Length = 257
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 90/193 (46%), Gaps = 41/193 (21%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDE GRGP+ GP+V + P + + LN DSK L E KRE ++++K + ++
Sbjct: 74 IAGIDEVGRGPLAGPVVTAAVVLPEDF--YIPGLN--DSKKLSEAKRERFYDEIK-DHAI 128
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
V II P+ + ++IN+ + + + ++ V N+ + +D +
Sbjct: 129 AIGVGIISPQVI-------DEINIYQATKQA---MLDAVANLSCTPEYLLIDAM------ 172
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 195
KL P + K D+ +S ASI+AKVTRDR M + G
Sbjct: 173 --KLPTSIPQTSII---KGDAKSVSISAASIIAKVTRDR-------------MMKELGGK 214
Query: 196 YP--GDHKHIIFG 206
YP G +H+ +G
Sbjct: 215 YPAYGFEQHMGYG 227
>gi|414083722|ref|YP_006992430.1| ribonuclease HII family protein [Carnobacterium maltaromaticum
LMA28]
gi|412997306|emb|CCO11115.1| ribonuclease HII family protein [Carnobacterium maltaromaticum
LMA28]
Length = 261
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 84/180 (46%), Gaps = 26/180 (14%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDE GRGP+ GP+V + P + L DSK L E KR+ELF+ +K + ++
Sbjct: 75 IAGIDEVGRGPLAGPVVAAAVILPHDFH----VLEINDSKQLSESKRDELFDKIK-DSAL 129
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
+ I D + +++N+ E + + +I V N+ I + +D +
Sbjct: 130 AIGIGIKDEGII-------DQVNIYEATK---LAMIEAVENLTIDPEHLLIDAMA----- 174
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 195
L P K + K D+ ++ ASI+AKVTRDR ++ + +N G G
Sbjct: 175 ---LDLPIPQSKII---KGDTKSLSIAAASIIAKVTRDRMMKEYAKMYPGYGFEKNAGYG 228
>gi|432330429|ref|YP_007248572.1| ribonuclease H, mammalian HI/archaeal HII subfamily [Methanoregula
formicicum SMSP]
gi|432137138|gb|AGB02065.1| ribonuclease H, mammalian HI/archaeal HII subfamily [Methanoregula
formicicum SMSP]
Length = 213
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 64/211 (30%), Positives = 94/211 (44%), Gaps = 25/211 (11%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I G+DEAG+G VLGPMV + + L L DSK L ++RE L+ +K V
Sbjct: 2 ICGVDEAGKGSVLGPMVVAAVAV--PAEDVLDDLGVKDSKLLSAKERERLYSLIKKRCKV 59
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
A +D E+ A + ++ +N + +I ++ + ++ AE
Sbjct: 60 --ATVRLDANEIDAI---RTEMTMNAAVARAHAQVIRKLSPDCAYVDACDVNIFRYAEMV 114
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 195
++ L + V AD +PVVS ASI+AKVTRDR + T + + GSG
Sbjct: 115 KSYLDNH---CEIVSEHHADEKFPVVSAASIIAKVTRDRAI------ATLSKKYGDLGSG 165
Query: 196 YPGDHKHIIF---------GFPSLVRFSWGT 217
YP D I F P + R SW T
Sbjct: 166 YPSDPVTIRFLNDWIDEHRTPPPIARKSWKT 196
>gi|392531087|ref|ZP_10278224.1| ribonuclease HII [Carnobacterium maltaromaticum ATCC 35586]
Length = 261
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 84/180 (46%), Gaps = 26/180 (14%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDE GRGP+ GP+V + P + L DSK L E KR+ELF+ +K + ++
Sbjct: 75 IAGIDEVGRGPLAGPVVAAAVILPHDFH----VLEINDSKQLSESKRDELFDKIK-DSAL 129
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
+ I D + +++N+ E + + +I V N+ I + +D +
Sbjct: 130 AIGIGIKDEGII-------DQVNIYEATK---LAMIEAVENLTIDPEHLLIDAMA----- 174
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 195
L P K + K D+ ++ ASI+AKVTRDR ++ + +N G G
Sbjct: 175 ---LDLPIPQSKII---KGDTKSLSIAAASIIAKVTRDRMMKEYAKMYPGYGFEKNAGYG 228
>gi|322372194|ref|ZP_08046735.1| ribonuclease HII [Haladaptatus paucihalophilus DX253]
gi|320548203|gb|EFW89876.1| ribonuclease HII [Haladaptatus paucihalophilus DX253]
Length = 212
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 61/218 (27%), Positives = 93/218 (42%), Gaps = 38/218 (17%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYC--PCSYQQTLATLNFADSKTLKEEKREELFEDLKVND 73
+ G+DEAGRGPVLG M + P DSK L E+REEL L+ ++
Sbjct: 1 MFGVDEAGRGPVLGSMFAAAVAIDDPDDLPD-----GIDDSKNLSPERREELAAALRADE 55
Query: 74 SVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAE 133
+V V E++ ++ + ++N ++ + I+R+++ G DT
Sbjct: 56 AVAVGV-----AEITTTRIDDPETDMNTLTVAAHGEAISRIVSGGERGIVDACDT----- 105
Query: 134 KYQAKLSQRF-----PSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENM 188
+++ ++R P I AD + +V ASIVAKV RD + + E+
Sbjct: 106 -SESRFARRVAAAVGPEITVEAEHGADETHAIVGAASIVAKVERDAHV-ARLAEQ----- 158
Query: 189 HRNFGSGYPGDHKHIIF---------GFPSLVRFSWGT 217
H GSGYP D F P R SW T
Sbjct: 159 HGGVGSGYPSDPNTREFLREYVEAHGELPECARASWQT 196
>gi|387593201|gb|EIJ88225.1| hypothetical protein NEQG_01669 [Nematocida parisii ERTm3]
gi|387596086|gb|EIJ93708.1| hypothetical protein NEPG_01280 [Nematocida parisii ERTm1]
Length = 354
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 72/146 (49%), Gaps = 28/146 (19%)
Query: 92 LNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQAKLSQRFPSIKFV-- 149
+NK NLN++S D + +++ + ++E+++DTVG+ + K+ R K +
Sbjct: 182 VNKQCQNLNDLSIDCILNMLSMCAGFNVPISEIFIDTVGNKKTLHEKVKNRMKEYKTIKK 241
Query: 150 --VSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG---------SGYPG 198
V +KADS Y V ASI+AKVTRD +F E E ++ + SGYP
Sbjct: 242 ITVEEKADSKYQTVGAASILAKVTRD------MFLEMPEVVNIMYSEAKLPSMPISGYPS 295
Query: 199 D--------HKHII-FGFPSLVRFSW 215
D H I GFPS+ R +W
Sbjct: 296 DAATKNWMEHSFISGIGFPSIFRITW 321
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 51/85 (60%), Gaps = 4/85 (4%)
Query: 8 PKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFE 67
PK N +GIDEAGRGP+ GP+VYG +Y + + T+ + DSK +K++KR
Sbjct: 39 PKNLGNSYKVGIDEAGRGPLAGPLVYGLVY----WAKDPKTVIYNDSKKVKKQKRGLQHI 94
Query: 68 DLKVNDSVGWAVDIIDPRELSAKML 92
DL +++VG+ + I P +S ML
Sbjct: 95 DLYRDENVGFIIRCISPLFISINML 119
>gi|448634381|ref|ZP_21674779.1| ribonuclease HII [Haloarcula vallismortis ATCC 29715]
gi|445749354|gb|EMA00799.1| ribonuclease HII [Haloarcula vallismortis ATCC 29715]
Length = 211
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 98/212 (46%), Gaps = 30/212 (14%)
Query: 18 GIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL-KVNDSVG 76
G+DEAG+GPVLG M + DSK +K ++RE L E++ + D+VG
Sbjct: 4 GVDEAGKGPVLGSM----FAAAVRAEPAALPDGVGDSKDIKPQRRERLAEEIHESADAVG 59
Query: 77 WAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQ 136
A E+ + ++ ++ ++N ++ ++ ++ V G+ T DT DAE++
Sbjct: 60 VA-------EIPVERIDDDETDMNTLTVEAQAEALSAVARDGLSGTVDAGDT--DAERFG 110
Query: 137 AKLSQRFPS-IKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 195
+++ + + AD P+V ASI+AK R+ + E AE + + GSG
Sbjct: 111 RRVAGAVDAEVTVTAEHGADETDPLVGAASIIAKEAREAHVA-----ELAEE-YGDVGSG 164
Query: 196 YPGDHKHIIF---------GFPSLVRFSWGTC 218
YP D F P+ R SW TC
Sbjct: 165 YPSDPTTRSFLADCVDRHGELPACARRSWSTC 196
>gi|229013020|ref|ZP_04170185.1| Ribonuclease [Bacillus mycoides DSM 2048]
gi|229134645|ref|ZP_04263454.1| Ribonuclease [Bacillus cereus BDRD-ST196]
gi|229168576|ref|ZP_04296299.1| Ribonuclease [Bacillus cereus AH621]
gi|423489013|ref|ZP_17465695.1| ribonuclease HII [Bacillus cereus BtB2-4]
gi|423494738|ref|ZP_17471382.1| ribonuclease HII [Bacillus cereus CER057]
gi|423498470|ref|ZP_17475087.1| ribonuclease HII [Bacillus cereus CER074]
gi|423592167|ref|ZP_17568198.1| ribonuclease HII [Bacillus cereus VD048]
gi|423598852|ref|ZP_17574852.1| ribonuclease HII [Bacillus cereus VD078]
gi|423661323|ref|ZP_17636492.1| ribonuclease HII [Bacillus cereus VDM022]
gi|423669411|ref|ZP_17644440.1| ribonuclease HII [Bacillus cereus VDM034]
gi|423674410|ref|ZP_17649349.1| ribonuclease HII [Bacillus cereus VDM062]
gi|228614982|gb|EEK72084.1| Ribonuclease [Bacillus cereus AH621]
gi|228648691|gb|EEL04717.1| Ribonuclease [Bacillus cereus BDRD-ST196]
gi|228748274|gb|EEL98134.1| Ribonuclease [Bacillus mycoides DSM 2048]
gi|401150831|gb|EJQ58283.1| ribonuclease HII [Bacillus cereus CER057]
gi|401160519|gb|EJQ67897.1| ribonuclease HII [Bacillus cereus CER074]
gi|401232300|gb|EJR38802.1| ribonuclease HII [Bacillus cereus VD048]
gi|401237122|gb|EJR43579.1| ribonuclease HII [Bacillus cereus VD078]
gi|401298538|gb|EJS04138.1| ribonuclease HII [Bacillus cereus VDM034]
gi|401301364|gb|EJS06953.1| ribonuclease HII [Bacillus cereus VDM022]
gi|401309961|gb|EJS15294.1| ribonuclease HII [Bacillus cereus VDM062]
gi|402432261|gb|EJV64320.1| ribonuclease HII [Bacillus cereus BtB2-4]
Length = 257
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 89/193 (46%), Gaps = 41/193 (21%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDE GRGP+ GP+V + P + + LN DSK L E KRE ++++K ++
Sbjct: 74 IAGIDEVGRGPLAGPVVTAAVVLPEDF--YIPGLN--DSKKLSEAKRERFYDEIK-EHAI 128
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
V II P+ + ++IN+ + + + ++ V N+ + +D +
Sbjct: 129 AIGVGIISPQVI-------DEINIYQATKQA---MLDAVANLSCTPEYLLIDAM------ 172
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 195
KL P + K D+ +S ASI+AKVTRDR M + G
Sbjct: 173 --KLPTSIPQTSII---KGDAKSVSISAASIIAKVTRDR-------------MMKELGGK 214
Query: 196 YP--GDHKHIIFG 206
YP G +H+ +G
Sbjct: 215 YPAYGFEQHMGYG 227
>gi|423511871|ref|ZP_17488402.1| ribonuclease HII [Bacillus cereus HuA2-1]
gi|402450132|gb|EJV81966.1| ribonuclease HII [Bacillus cereus HuA2-1]
Length = 257
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 89/193 (46%), Gaps = 41/193 (21%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDE GRGP+ GP+V + P + + LN DSK L E KRE ++++K ++
Sbjct: 74 IAGIDEVGRGPLAGPVVTAAVVLPEDF--YIPGLN--DSKKLSEAKRERFYDEIK-EHAI 128
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
V II P+ + ++IN+ + + + ++ V N+ + +D +
Sbjct: 129 AIGVGIISPQVI-------DEINIYQATKQA---MLDAVANLSCTPEYLLIDAM------ 172
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 195
KL P + K D+ +S ASI+AKVTRDR M + G
Sbjct: 173 --KLPTSIPQTSII---KGDAKSVSISAASIIAKVTRDR-------------MMKELGGK 214
Query: 196 YP--GDHKHIIFG 206
YP G +H+ +G
Sbjct: 215 YPAYGFEQHMGYG 227
>gi|269986419|gb|EEZ92706.1| ribonuclease HII [Candidatus Parvarchaeum acidiphilum ARMAN-4]
Length = 218
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 62/217 (28%), Positives = 95/217 (43%), Gaps = 25/217 (11%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVG 76
+GIDEAGRGPV+GPM + Q + DSK L KR L E + S
Sbjct: 4 IGIDEAGRGPVIGPMTIAGIGIGEDLAQKFKLIGVKDSKML-SIKRIYLLEREIIKSSNN 62
Query: 77 WAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQ 136
+ V + E+ + +N NLN + D+ + + +++ +T EK +
Sbjct: 63 FKVIKLSAEEIDNRF--ENGKNLNYLELDNMAEIANNLAGETVVIDSPSRNT----EKIR 116
Query: 137 AKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGY 196
LS++ K + AD + VS ASI+AK R+R + E+ + + +FGSGY
Sbjct: 117 LYLSKKIKDKKIIAENYADKNHIEVSAASIIAKANREREV-----EKIKKELGYDFGSGY 171
Query: 197 PGDHKHIIF-------------GFPSLVRFSWGTCTS 220
P D K I F + VR +W T +
Sbjct: 172 PSDPKTIQFIKIITENERINQEPYKKFVRKTWNTVKN 208
>gi|423612054|ref|ZP_17587915.1| ribonuclease HII [Bacillus cereus VD107]
gi|401247061|gb|EJR53405.1| ribonuclease HII [Bacillus cereus VD107]
Length = 257
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 90/193 (46%), Gaps = 41/193 (21%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDE GRGP+ GP+V + P + + LN DSK L E KRE ++++K + ++
Sbjct: 74 IAGIDEVGRGPLAGPVVTAAVILPEDF--YIPGLN--DSKKLSEAKRERFYDEIK-DHAI 128
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
V I+ P+ + ++IN+ + + + ++ V N+ + +D +
Sbjct: 129 AIGVGIVSPQVI-------DEINIYQATKQA---MLDAVANLSCTPEYLLIDAM------ 172
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 195
KL P + K D+ +S ASI+AKVTRDR M + G
Sbjct: 173 --KLPTSIPQTSII---KGDAKSVSISAASIIAKVTRDR-------------MMKELGEK 214
Query: 196 YP--GDHKHIIFG 206
YP G +H+ +G
Sbjct: 215 YPAYGFEQHMGYG 227
>gi|187928381|ref|YP_001898868.1| ribonuclease HII [Ralstonia pickettii 12J]
gi|238691815|sp|B2UBB5.1|RNH2_RALPJ RecName: Full=Ribonuclease HII; Short=RNase HII
gi|187725271|gb|ACD26436.1| Ribonuclease H [Ralstonia pickettii 12J]
Length = 232
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 78/182 (42%), Gaps = 26/182 (14%)
Query: 18 GIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGW 77
G+DEAGRGP+ GP+ + ADSK L KRE L++++ V ++ W
Sbjct: 30 GVDEAGRGPLAGPVTAAAVV----LNPRKPIKGLADSKILTARKREALYDEI-VEKALAW 84
Query: 78 AVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQA 137
V A + ++IN+ + + + V +G L V +D
Sbjct: 85 HV-------AEATVEEIDRINILHATMLAMQRAVQGVAALGTLPDLVQVD---------- 127
Query: 138 KLSQRFPSIKFVVSK--KADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 195
R P + F V K D+L P +S ASI+AKVTRDR L E + G G
Sbjct: 128 --GNRCPQVAFAVEAIVKGDALVPAISAASILAKVTRDRQLAALHIEFPLYGFDVHAGYG 185
Query: 196 YP 197
P
Sbjct: 186 TP 187
>gi|423483427|ref|ZP_17460117.1| ribonuclease HII [Bacillus cereus BAG6X1-2]
gi|401140978|gb|EJQ48533.1| ribonuclease HII [Bacillus cereus BAG6X1-2]
Length = 257
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 89/193 (46%), Gaps = 41/193 (21%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDE GRGP+ GP+V + P + + LN DSK L E KRE ++++K ++
Sbjct: 74 IAGIDEVGRGPLAGPVVTAAVVLPEDF--YIPGLN--DSKKLSEAKRERFYDEIK-EHAI 128
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
V I+ P+ + ++IN+ + + + ++ V N+ + +D +
Sbjct: 129 AIGVGIVSPQVI-------DEINIYQATKQA---MLDAVANLSCTPQYLLIDAM------ 172
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 195
KL P + K D+ +S ASI+AKVTRDR M + G
Sbjct: 173 --KLPTSIPQTSII---KGDAKSVSISAASIIAKVTRDR-------------MMKELGGK 214
Query: 196 YP--GDHKHIIFG 206
YP G +H+ +G
Sbjct: 215 YPAYGFEQHMGYG 227
>gi|383620733|ref|ZP_09947139.1| ribonuclease HII [Halobiforma lacisalsi AJ5]
gi|448698324|ref|ZP_21698963.1| ribonuclease HII [Halobiforma lacisalsi AJ5]
gi|445780943|gb|EMA31813.1| ribonuclease HII [Halobiforma lacisalsi AJ5]
Length = 223
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 55/217 (25%), Positives = 90/217 (41%), Gaps = 26/217 (11%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVG 76
G+DEAG+GP LG M ++ + + ADSK L +R+ L E ++ +D +
Sbjct: 3 FGVDEAGKGPALGSMFAAAVHL---EEPAVLPDGIADSKRLSPSRRDALAETIREDDRIS 59
Query: 77 WAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQ 136
V + P + + N + + +H +AI + + + DA+++
Sbjct: 60 VGVAEVPPERIDDPETDMNSLTVR--AHAAAIEDALADVAADDRIAGLCDACDTDADRFA 117
Query: 137 AKLSQRF------PSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHR 190
+++ +++ AD P+V ASIVAKV RD + E +
Sbjct: 118 RRVADACGPFEGEGTLEVDARHGADDDSPLVGAASIVAKVERDAHVAAIADE------YG 171
Query: 191 NFGSGYPGDHKHIIF---------GFPSLVRFSWGTC 218
+ GSGYPGD F P R SW TC
Sbjct: 172 DVGSGYPGDSTTREFLSDYVAEHGELPPFARSSWSTC 208
>gi|423367881|ref|ZP_17345313.1| ribonuclease HII [Bacillus cereus VD142]
gi|401082742|gb|EJP91007.1| ribonuclease HII [Bacillus cereus VD142]
Length = 257
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 89/193 (46%), Gaps = 41/193 (21%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDE GRGP+ GP+V + P + + LN DSK L E KRE ++++K ++
Sbjct: 74 IAGIDEVGRGPLAGPVVTAAVVLPEDF--YIPGLN--DSKKLSEAKRERFYDEIK-EHAI 128
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
V II P+ + ++IN+ + + + ++ V N+ + +D +
Sbjct: 129 AIGVGIISPQVI-------DEINIYQATKQA---MLDAVANLSCTPEYLLIDAM------ 172
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 195
KL P + K D+ +S ASI+AKVTRDR M + G
Sbjct: 173 --KLPTSIPQTSII---KGDAKSVSISAASIIAKVTRDR-------------MMKELGGK 214
Query: 196 YP--GDHKHIIFG 206
YP G +H+ +G
Sbjct: 215 YPAYGFEQHMGYG 227
>gi|344171454|emb|CCA84066.1| ribonuclease HII (RNase HII) [Ralstonia syzygii R24]
Length = 236
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 81/183 (44%), Gaps = 28/183 (15%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+ G+DEAGRGP+ GP+ + ADSK L +KRE L+ ++ V ++
Sbjct: 29 LCGVDEAGRGPLAGPVTAAAVV----LNPRKPIKGLADSKVLTAKKREALYGEI-VEKAL 83
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
W V A + ++IN+ + + + V G+L V +D
Sbjct: 84 AWHV-------AEATVEEIDRINILHATMLAMQRAVQGVAAQGVLPDLVQVD-------- 128
Query: 136 QAKLSQRFPSIKFVVSK--KADSLYPVVSGASIVAKVTRDRTLRGW--IFEETAENMHRN 191
R P + F V K D+L P +S ASI+AKVTRDR L F ++H
Sbjct: 129 ----GNRCPQVAFAVEAIVKGDALVPAISAASILAKVTRDRQLAALHIAFPHYGFDVHAG 184
Query: 192 FGS 194
+G+
Sbjct: 185 YGT 187
>gi|229061440|ref|ZP_04198785.1| Ribonuclease [Bacillus cereus AH603]
gi|423558600|ref|ZP_17534902.1| ribonuclease HII [Bacillus cereus MC67]
gi|228717863|gb|EEL69511.1| Ribonuclease [Bacillus cereus AH603]
gi|401191868|gb|EJQ98890.1| ribonuclease HII [Bacillus cereus MC67]
Length = 257
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 89/193 (46%), Gaps = 41/193 (21%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDE GRGP+ GP+V + P + + LN DSK L E KRE ++++K ++
Sbjct: 74 IAGIDEVGRGPLAGPVVTAAVVLPEDF--YIPGLN--DSKKLSEAKRERFYDEIK-EHAI 128
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
V I+ P+ + ++IN+ + + + ++ V N+ + +D +
Sbjct: 129 AIGVGIVSPQVI-------DEINIYQATKQA---MLDAVANLSCTPEYLLIDAM------ 172
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 195
KL P + K D+ +S ASI+AKVTRDR M + G
Sbjct: 173 --KLPTSIPQTSII---KGDAKSVSISAASIIAKVTRDR-------------MMKELGGK 214
Query: 196 YP--GDHKHIIFG 206
YP G +H+ +G
Sbjct: 215 YPAYGFEQHMGYG 227
>gi|238916977|ref|YP_002930494.1| ribonuclease HII [Eubacterium eligens ATCC 27750]
gi|238872337|gb|ACR72047.1| ribonuclease HII [Eubacterium eligens ATCC 27750]
Length = 218
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 93/182 (51%), Gaps = 29/182 (15%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDEAGRGP+ GP+V G + P + L DSK L E+KR+ELF+ +K +++
Sbjct: 38 ICGIDEAGRGPLAGPVVAGAVILPKGKR----ILYVNDSKKLSEKKRDELFDVIK-EEAL 92
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRV-LNIGILLTEVYLDTVGDAEK 134
+ + I+ P + ++IN+ + ++++ + ++ + ILL DA
Sbjct: 93 SYGIGIVSPERI-------DEINILQATYEAMHEAVNKLSVKPDILLN--------DAVT 137
Query: 135 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW--IFEETAENMHRNF 192
++ P I K D+ ++ ASI+AKVTRDR + + ++ E H+ +
Sbjct: 138 IPGIDIKQIPII------KGDAKSLSIASASILAKVTRDRLMTEYDSLYPEYGFARHKGY 191
Query: 193 GS 194
G+
Sbjct: 192 GT 193
>gi|220928167|ref|YP_002505076.1| ribonuclease HII [Clostridium cellulolyticum H10]
gi|254807971|sp|B8I7T9.1|RNH2_CLOCE RecName: Full=Ribonuclease HII; Short=RNase HII
gi|219998495|gb|ACL75096.1| ribonuclease HII/HIII [Clostridium cellulolyticum H10]
Length = 255
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 64/205 (31%), Positives = 99/205 (48%), Gaps = 34/205 (16%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I G+DEAGRGP+ GP+V + P T+ +N DSK L E +RE+LF ++K ++
Sbjct: 74 IAGVDEAGRGPLAGPVVAAAVVLPNGL--TIEGIN--DSKKLSESQREKLFSEIK-EKAL 128
Query: 76 GWAVDIIDPREL-SAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
+ + +ID + + +LN K + E A+ + + ILL V LD +
Sbjct: 129 SYGISVIDEKYIDEVNILNATKRAMTE-----ALSQLEPTADC-ILLDAVRLDNIS---- 178
Query: 135 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGS 194
+++ P I K DSL ++ ASI+AKVTRDR L + + + G
Sbjct: 179 -----TKQVPII------KGDSLSLSIAAASILAKVTRDRLLTEYDAKYPQYGFAAHKGY 227
Query: 195 GYPGDHKHII----FGFPSLVRFSW 215
G P +HI FG + R S+
Sbjct: 228 GTP---QHISAIKKFGLCPIHRLSF 249
>gi|241662957|ref|YP_002981317.1| ribonuclease HII [Ralstonia pickettii 12D]
gi|309782124|ref|ZP_07676854.1| ribonuclease HII [Ralstonia sp. 5_7_47FAA]
gi|404377816|ref|ZP_10982916.1| ribonuclease HII [Ralstonia sp. 5_2_56FAA]
gi|240864984|gb|ACS62645.1| Ribonuclease H [Ralstonia pickettii 12D]
gi|308919190|gb|EFP64857.1| ribonuclease HII [Ralstonia sp. 5_7_47FAA]
gi|348612883|gb|EGY62490.1| ribonuclease HII [Ralstonia sp. 5_2_56FAA]
Length = 232
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 80/184 (43%), Gaps = 26/184 (14%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+ G+DEAGRGP+ GP+ + ADSK L +KRE L++++ V ++
Sbjct: 28 LCGVDEAGRGPLAGPVTAAAVV----LNPRKPIKGLADSKILTAKKREALYDEI-VEKAL 82
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
W V A + ++IN+ + + + V +G L V +D
Sbjct: 83 AWHV-------AEATVEEIDRINILHATMLAMQRAVHGVAALGTLPDLVQVD-------- 127
Query: 136 QAKLSQRFPSIKFVVSK--KADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG 193
R P + F V K D+L P +S ASI+AKVTRDR L E + G
Sbjct: 128 ----GNRCPQVAFAVEAVVKGDALVPAISAASILAKVTRDRQLAALHVEFPLYGFDVHAG 183
Query: 194 SGYP 197
G P
Sbjct: 184 YGTP 187
>gi|423470051|ref|ZP_17446795.1| ribonuclease HII [Bacillus cereus BAG6O-2]
gi|402437303|gb|EJV69327.1| ribonuclease HII [Bacillus cereus BAG6O-2]
Length = 257
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 89/193 (46%), Gaps = 41/193 (21%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDE GRGP+ GP+V + P + + LN DSK L E KRE ++++K ++
Sbjct: 74 IAGIDEVGRGPLAGPVVTAAVVLPEDF--YIPGLN--DSKKLSEAKRERFYDEIK-EHAI 128
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
V I+ P+ + ++IN+ + + + ++ V N+ + +D +
Sbjct: 129 AIGVGIVSPQVI-------DEINIYQATKQA---MLDAVANLSCTPEYLLIDAM------ 172
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 195
KL P + K D+ +S ASI+AKVTRDR M + G
Sbjct: 173 --KLPTSIPQTSII---KGDAKSVSISAASIIAKVTRDR-------------MMKELGGK 214
Query: 196 YP--GDHKHIIFG 206
YP G +H+ +G
Sbjct: 215 YPAYGFEQHMGYG 227
>gi|423452862|ref|ZP_17429715.1| ribonuclease HII [Bacillus cereus BAG5X1-1]
gi|423522333|ref|ZP_17498806.1| ribonuclease HII [Bacillus cereus HuA4-10]
gi|401139421|gb|EJQ46983.1| ribonuclease HII [Bacillus cereus BAG5X1-1]
gi|401175027|gb|EJQ82230.1| ribonuclease HII [Bacillus cereus HuA4-10]
Length = 257
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 89/193 (46%), Gaps = 41/193 (21%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDE GRGP+ GP+V + P + + LN DSK L E KRE ++++K ++
Sbjct: 74 IAGIDEVGRGPLAGPVVTAAVVLPEDF--YIPGLN--DSKKLSEAKRERFYDEIK-EHAI 128
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
V I+ P+ + ++IN+ + + + ++ V N+ + +D +
Sbjct: 129 AIGVGIVSPQVI-------DEINIYQATKQA---MLDAVANLSCTPEYLLIDAM------ 172
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 195
KL P + K D+ +S ASI+AKVTRDR M + G
Sbjct: 173 --KLPTSIPQTSII---KGDAKSVSISAASIIAKVTRDR-------------MMKELGGK 214
Query: 196 YP--GDHKHIIFG 206
YP G +H+ +G
Sbjct: 215 YPAYGFEQHMGYG 227
>gi|300175420|emb|CBK20731.2| unnamed protein product [Blastocystis hominis]
Length = 539
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 47/78 (60%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I+GIDEAGRGPV+GPMVY Y S + ++ L F DSK +R+ + + S+
Sbjct: 452 IVGIDEAGRGPVVGPMVYAAAYWAKSKNEEISNLGFDDSKKFTSGQRDGFRKTIDETGSI 511
Query: 76 GWAVDIIDPRELSAKMLN 93
G+ + + P+E+SA ML
Sbjct: 512 GYLIRSLSPKEISANMLQ 529
>gi|256003759|ref|ZP_05428747.1| Ribonuclease H [Clostridium thermocellum DSM 2360]
gi|281417482|ref|ZP_06248502.1| Ribonuclease H [Clostridium thermocellum JW20]
gi|385778809|ref|YP_005687974.1| Ribonuclease H [Clostridium thermocellum DSM 1313]
gi|419723174|ref|ZP_14250309.1| ribonuclease HII/HIII [Clostridium thermocellum AD2]
gi|419724922|ref|ZP_14251977.1| ribonuclease HII/HIII [Clostridium thermocellum YS]
gi|255992320|gb|EEU02414.1| Ribonuclease H [Clostridium thermocellum DSM 2360]
gi|281408884|gb|EFB39142.1| Ribonuclease H [Clostridium thermocellum JW20]
gi|316940489|gb|ADU74523.1| Ribonuclease H [Clostridium thermocellum DSM 1313]
gi|380771542|gb|EIC05407.1| ribonuclease HII/HIII [Clostridium thermocellum YS]
gi|380780941|gb|EIC10604.1| ribonuclease HII/HIII [Clostridium thermocellum AD2]
Length = 261
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 61/203 (30%), Positives = 98/203 (48%), Gaps = 30/203 (14%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVND-S 74
I GIDEAGRGP+ GP+V + P Q + DSK L E +RE+LF+ +ND +
Sbjct: 80 IAGIDEAGRGPLAGPVVAAAVILP----QDVFIEGLNDSKKLTENQREKLFD--VINDKA 133
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
+G + I+D +++ N +N + + A+G + V +I + + + LD +
Sbjct: 134 IGVGIGIVDEKQID----EINILNATKKAMKLAVGNLKPVPDI-LFIDSLKLDDI----- 183
Query: 135 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGS 194
+I+ K D+ ++ ASI+AKVTRDR LR + R+ G
Sbjct: 184 ----------NIEQNSIVKGDAKSVSIAAASIIAKVTRDRILREMDKKYPMYGFARHKGY 233
Query: 195 GYPGDHKHII--FGFPSLVRFSW 215
G G+H I +G + R S+
Sbjct: 234 G-TGEHIEAIKKYGICPIHRVSF 255
>gi|423623087|ref|ZP_17598865.1| ribonuclease HII [Bacillus cereus VD148]
gi|401259860|gb|EJR66034.1| ribonuclease HII [Bacillus cereus VD148]
Length = 257
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 86/193 (44%), Gaps = 41/193 (21%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDE GRGP+ GP+V + P + DSK L E KRE ++++K ++
Sbjct: 74 IAGIDEVGRGPLAGPVVTAAVVLPDDF----YIPGLDDSKKLSEAKRERFYDEIKAQ-AI 128
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
V I+ P+ + ++IN+ + + + ++ V N+ + +D +
Sbjct: 129 AIGVGIVSPQVI-------DEINIYQATKQA---MLDAVANLSCTPQYLLIDAM------ 172
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 195
KL P + K D+ +S ASI+AKVTRDR M + G
Sbjct: 173 --KLPTSIPQTSII---KGDAKSVSISAASIIAKVTRDR-------------MMKELGEK 214
Query: 196 YP--GDHKHIIFG 206
YP G +H+ +G
Sbjct: 215 YPAYGFEQHMGYG 227
>gi|164688555|ref|ZP_02212583.1| hypothetical protein CLOBAR_02200 [Clostridium bartlettii DSM
16795]
gi|164602968|gb|EDQ96433.1| ribonuclease HII [Clostridium bartlettii DSM 16795]
Length = 255
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 92/181 (50%), Gaps = 27/181 (14%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I G+DEAGRGP+ GP+V +++ DSK L E KREELF+ +K ++
Sbjct: 75 IGGVDEAGRGPLAGPVVASV----VVFEKGTKIPYINDSKKLSEAKREELFDIIK-EQAL 129
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
+ + I+D E+ N +N ++ + A+ + + + +LL V T+ D +
Sbjct: 130 DYGIGIVDNEEID----EYNILNATYMAMNKALNALKKKPDY-LLLDAV---TIPDLD-- 179
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW--IFEETAENMHRNFG 193
++FP I K D+ ++GASI+AKVTRDR + + I+ + H+ +G
Sbjct: 180 ----IKQFPII------KGDAKSISIAGASILAKVTRDRLMYKYDEIYPQYGFKHHKGYG 229
Query: 194 S 194
+
Sbjct: 230 T 230
>gi|125973279|ref|YP_001037189.1| ribonuclease HII [Clostridium thermocellum ATCC 27405]
gi|189043587|sp|A3DDG7.1|RNH2_CLOTH RecName: Full=Ribonuclease HII; Short=RNase HII
gi|125713504|gb|ABN51996.1| Ribonuclease H [Clostridium thermocellum ATCC 27405]
Length = 256
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 61/203 (30%), Positives = 98/203 (48%), Gaps = 30/203 (14%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVND-S 74
I GIDEAGRGP+ GP+V + P Q + DSK L E +RE+LF+ +ND +
Sbjct: 75 IAGIDEAGRGPLAGPVVAAAVILP----QDVFIEGLNDSKKLTENQREKLFD--VINDKA 128
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
+G + I+D +++ N +N + + A+G + V +I + + + LD +
Sbjct: 129 IGVGIGIVDEKQID----EINILNATKKAMKLAVGNLKPVPDI-LFIDSLKLDDI----- 178
Query: 135 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGS 194
+I+ K D+ ++ ASI+AKVTRDR LR + R+ G
Sbjct: 179 ----------NIEQNSIVKGDAKSVSIAAASIIAKVTRDRILREMDKKYPMYGFARHKGY 228
Query: 195 GYPGDHKHII--FGFPSLVRFSW 215
G G+H I +G + R S+
Sbjct: 229 G-TGEHIEAIKKYGICPIHRVSF 250
>gi|255281039|ref|ZP_05345594.1| ribonuclease HII [Bryantella formatexigens DSM 14469]
gi|255268487|gb|EET61692.1| ribonuclease HII [Marvinbryantia formatexigens DSM 14469]
Length = 252
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 96/189 (50%), Gaps = 41/189 (21%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCP--CSYQQTLATLNFADSKTLKEEKREELFEDLKVND 73
I GIDEAGRGP+ GP+V G + P C T+ LN DSK L E+ RE+L++++ +
Sbjct: 72 ICGIDEAGRGPLAGPVVAGAVILPKGC----TIRYLN--DSKQLSEKMREQLYDEI-MER 124
Query: 74 SVGWAVDIIDPRELSAKMLNKNKINLNEISHDS---AIGLITRVLNIGILLTEVYLDTVG 130
+V V + P + ++IN+ + ++++ AIG ++ + ILL D V
Sbjct: 125 AVAVGVGMASPARI-------DEINILQATYEAMRDAIGALS--VRPDILLN----DAV- 170
Query: 131 DAEKYQAKLSQRFPS--IKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW--IFEETAE 186
R P I+ V K D+ ++ AS++AKVTRDR ++ + + E
Sbjct: 171 -----------RIPGTDIEQVPIVKGDAKSLSIAAASVIAKVTRDRLMKEYDALMPEYGF 219
Query: 187 NMHRNFGSG 195
H+ +GS
Sbjct: 220 AAHKGYGSA 228
>gi|333897172|ref|YP_004471046.1| ribonuclease H [Thermoanaerobacterium xylanolyticum LX-11]
gi|333112437|gb|AEF17374.1| Ribonuclease H [Thermoanaerobacterium xylanolyticum LX-11]
Length = 252
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 66/212 (31%), Positives = 101/212 (47%), Gaps = 42/212 (19%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDE GRGP+ GP+V GC+ P +Q+ + DSK L E KRE L E +K ++
Sbjct: 70 IGGIDEVGRGPLAGPVVAGCVILP---KQSFIP-DIDDSKKLSESKRELLSEIIK-KKAI 124
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
+ + IID ++ ++IN+ +++ A+ + LNI V T+ D +
Sbjct: 125 AYGIGIIDNEQI-------DRINILNSTYE-AMKVAISNLNIKADFLLVDAITIPDIDIA 176
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG-- 193
Q P I K D+ ++ ASIVAKVTRD +R + + M+ +G
Sbjct: 177 Q------IPII------KGDAKSISIAAASIVAKVTRDNIMRKY------DEMYPQYGFC 218
Query: 194 --SGYPGDHKHIIFGFPSLVRFSWGTCTSHFK 223
GY G +HI ++ +G C H K
Sbjct: 219 KNKGY-GTKEHI-----EAIK-KYGPCPIHRK 243
>gi|423615902|ref|ZP_17591736.1| ribonuclease HII [Bacillus cereus VD115]
gi|401260439|gb|EJR66612.1| ribonuclease HII [Bacillus cereus VD115]
Length = 257
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 86/193 (44%), Gaps = 41/193 (21%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDE GRGP+ GP+V + P + DSK L E KRE ++++K ++
Sbjct: 74 IAGIDEVGRGPLAGPVVTAAVVLPDDFH----IPGLDDSKKLSEAKRERFYDEIKAQ-AI 128
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
V I+ P+ + ++IN+ + + + ++ V N+ + +D +
Sbjct: 129 AIGVGIVSPQVI-------DEINIYQATKQA---MLDAVANLSCTPQYLLIDAM------ 172
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 195
KL P + K D+ +S ASI+AKVTRDR M + G
Sbjct: 173 --KLPTSIPQTSII---KGDAKSVSISAASIIAKVTRDR-------------MMKELGEK 214
Query: 196 YP--GDHKHIIFG 206
YP G +H+ +G
Sbjct: 215 YPAYGFGQHMGYG 227
>gi|448415068|ref|ZP_21577939.1| ribonuclease HII [Halosarcina pallida JCM 14848]
gi|445681186|gb|ELZ33622.1| ribonuclease HII [Halosarcina pallida JCM 14848]
Length = 224
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 61/221 (27%), Positives = 95/221 (42%), Gaps = 31/221 (14%)
Query: 13 NPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVN 72
+P ++G DEAG+GPVLGPMV + DSK L +REE+ L+ +
Sbjct: 5 SPVLVGSDEAGKGPVLGPMVAAAV----RADADALPDGIDDSKRLSSARREEIAATLREH 60
Query: 73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGD- 131
+ V V ++P + +++ ++N ++ + + + V G EV D GD
Sbjct: 61 EGVEIGVAFVEP-----ERIDRPDTDMNALTVAAHVEAVAAVAREG---DEVVTD-AGDV 111
Query: 132 -----AEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAE 186
+ + + + ++ +AD YP V AS+VAKV RD + + TA
Sbjct: 112 NESRFGRRVRTGVEEAGVAVSVTAEHRADETYPHVGAASVVAKVERDARMAEIDEDVTA- 170
Query: 187 NMHRNFGSGYPGDHKHIIF---------GFPSLVRFSWGTC 218
+ GSGYP D F P R SW TC
Sbjct: 171 --YGPVGSGYPSDPTTREFLRRYVGETGELPDCARASWSTC 209
>gi|331085160|ref|ZP_08334246.1| hypothetical protein HMPREF0987_00549 [Lachnospiraceae bacterium
9_1_43BFAA]
gi|330407943|gb|EGG87433.1| hypothetical protein HMPREF0987_00549 [Lachnospiraceae bacterium
9_1_43BFAA]
Length = 254
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/198 (30%), Positives = 94/198 (47%), Gaps = 32/198 (16%)
Query: 9 KWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFED 68
K+ I GIDE GRGP+ GP+V G + P Q L DSK L E++REEL+E
Sbjct: 65 KYRDAAFICGIDEVGRGPLAGPVVAGAVILPKDSQ----ILYLNDSKKLTEKRREELYEV 120
Query: 69 LKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDS---AIGLITRVLNIGILLTEVY 125
+ + ++V + I+ P + ++IN+ + ++++ A+G + N+ +L V
Sbjct: 121 I-MREAVAVGIGIVSPARI-------DEINILQATYEAMWEAVGKLCVEPNV-LLNDAVT 171
Query: 126 LDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETA 185
+ + P I V K D+ ++ ASIVAKVTRDR + + EE
Sbjct: 172 IPMIP-------------PHIVQVPIIKGDAKSVSIAAASIVAKVTRDRLMTEY--EEVL 216
Query: 186 ENMHRNFGSGYPGDHKHI 203
GY G +HI
Sbjct: 217 PGYGFASNKGY-GSSEHI 233
>gi|257126162|ref|YP_003164276.1| ribonuclease H [Leptotrichia buccalis C-1013-b]
gi|257050101|gb|ACV39285.1| Ribonuclease H [Leptotrichia buccalis C-1013-b]
Length = 214
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 70/228 (30%), Positives = 105/228 (46%), Gaps = 43/228 (18%)
Query: 13 NPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVN 72
N ++G+DEAGRGP+ GP+V G + + + L +N DSK L E+KRE LFE ++ N
Sbjct: 21 NKIVVGVDEAGRGPLAGPVVAGAVIVIQDFPE-LQEIN--DSKKLTEKKRERLFEAIEKN 77
Query: 73 DSVGWAV----DIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDT 128
VG + +I + L+A L + +N+++ SA + VL G L Y
Sbjct: 78 CIVGIGIASEKEIDEMNILNATFLAMRRA-INQVAEKSAFDI---VLVDGNHLIREY--- 130
Query: 129 VGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTL--RGWIFEETAE 186
G+ E +V K DS ++ ASIVAKVTRDR L F E
Sbjct: 131 EGEQE--------------CIV--KGDSKSLAIATASIVAKVTRDRMLCEIAKEFPEYQF 174
Query: 187 NMHRNFGSGYPGDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWESDE 234
H+ +G+ H+ I+ G C H K ++ + + E
Sbjct: 175 EKHKGYGT---KKHREIL--------LEKGACRYHRKTFLKKILDGSE 211
>gi|229104399|ref|ZP_04235068.1| Ribonuclease [Bacillus cereus Rock3-28]
gi|228679097|gb|EEL33305.1| Ribonuclease [Bacillus cereus Rock3-28]
Length = 257
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 87/193 (45%), Gaps = 41/193 (21%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDE GRGP+ GP+V + P ++ DSK L E KRE ++++K ++
Sbjct: 74 IAGIDEVGRGPLAGPVVTAAVVLPDNF----YIPGLDDSKKLSEAKRERFYDEIKAQ-AI 128
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
V I+ P+ + ++IN+ + + + ++ V N+ + +D +
Sbjct: 129 AIGVGIVSPQVI-------DEINIYQATKQA---MLDAVANLSCTPQYLLIDAM------ 172
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 195
KL P + K D+ +S ASI+AKVTRDR M + G
Sbjct: 173 --KLPTSIPQTSII---KGDAKSVSISAASIIAKVTRDR-------------MMKELGEK 214
Query: 196 YP--GDHKHIIFG 206
YP G +H+ +G
Sbjct: 215 YPAYGFGQHMGYG 227
>gi|283798046|ref|ZP_06347199.1| ribonuclease HII [Clostridium sp. M62/1]
gi|291074350|gb|EFE11714.1| ribonuclease HII [Clostridium sp. M62/1]
gi|295091815|emb|CBK77922.1| Ribonuclease HII [Clostridium cf. saccharolyticum K10]
Length = 223
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 93/189 (49%), Gaps = 28/189 (14%)
Query: 9 KWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFED 68
K+AS I GIDEAGRGP+ GP+V P + L DSK L E++REELF +
Sbjct: 25 KYASCGFICGIDEAGRGPLAGPVVAAACILPTDCE----ILYLNDSKKLTEKRREELFVE 80
Query: 69 LKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRV-LNIGILLTEVYLD 127
++ +V + V I+ P + ++IN+ + ++++ + ++ + + L + +
Sbjct: 81 IQ-EKAVSFGVGIVSPAVI-------DEINILQATYEAMRQAVEKLSVRPDVFLNDAVV- 131
Query: 128 TVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW--IFEETA 185
G E Q K+ K D+ ++ ASI+AKVTRD + + ++ E
Sbjct: 132 IPGIDESRQVKII------------KGDAKSVSIAAASILAKVTRDHMMEEYDRLYPEYG 179
Query: 186 ENMHRNFGS 194
H+ +G+
Sbjct: 180 FAKHKGYGT 188
>gi|325661112|ref|ZP_08149739.1| hypothetical protein HMPREF0490_00472 [Lachnospiraceae bacterium
4_1_37FAA]
gi|325472619|gb|EGC75830.1| hypothetical protein HMPREF0490_00472 [Lachnospiraceae bacterium
4_1_37FAA]
Length = 254
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 94/198 (47%), Gaps = 32/198 (16%)
Query: 9 KWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFED 68
K+ I GIDE GRGP+ GP+V G + P Q L DSK L E++REEL+E
Sbjct: 65 KYRDAAFICGIDEVGRGPLAGPVVAGAVILPKDSQ----ILYLNDSKKLTEKRREELYEV 120
Query: 69 LKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDS---AIGLITRVLNIGILLTEVY 125
+ + +++ + I+ P + ++IN+ + ++++ A+G + N+ +L V
Sbjct: 121 I-MREAIAVGIGIVSPARI-------DEINILQATYEAMREAVGKLCVEPNV-LLNDAVT 171
Query: 126 LDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETA 185
+ + P I V K D+ ++ ASIVAKVTRDR + + EE
Sbjct: 172 IPMIP-------------PHIVQVPIIKGDAKSVSIAAASIVAKVTRDRLMTEY--EEVL 216
Query: 186 ENMHRNFGSGYPGDHKHI 203
GY G +HI
Sbjct: 217 PGYGFASNKGY-GSSEHI 233
>gi|110668982|ref|YP_658793.1| ribonuclease HII [Haloquadratum walsbyi DSM 16790]
gi|109626729|emb|CAJ53196.1| ribonuclease H, type 2 [Haloquadratum walsbyi DSM 16790]
Length = 231
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 64/237 (27%), Positives = 98/237 (41%), Gaps = 36/237 (15%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVG 76
+G DEAG+GPVLGPM+ ++ ++ + DSK L R L E L+ + ++
Sbjct: 5 IGSDEAGKGPVLGPMICAAVHA----SPSVIPDDIDDSKRLNASTRRRLRETLESHTAID 60
Query: 77 WAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRV--LNIGILLTEVYLDTVGDAEK 134
+I ++ + N + LN H +AI + V N I+ + A +
Sbjct: 61 IGTAVIPVAQIDDPRTDMNTLTLN--GHIAAIADLDGVATFNGTIVADASDVSESRFATR 118
Query: 135 YQAKLSQRFPSIKFV--------VSKKADSLYPVVSGASIVAKVTRDRTLRGWI--FEET 184
+++L I + AD P+V+ ASI+AK RD + +E T
Sbjct: 119 LESRLIDECNGIDTIALNHCSIEARHGADEDDPLVAAASIIAKARRDEQITALAKEYETT 178
Query: 185 AENMHRNFGSGYPGDHKHIIF---------GFPSLVRFSWGTCTSHFKDIVEVLWES 232
GSGYP D K F P+ R SW T DIVE + +S
Sbjct: 179 GP-----IGSGYPSDQKTRAFLRRYIRTNGKVPACARRSWAT----VDDIVESIEQS 226
>gi|352682597|ref|YP_004893121.1| Ribonuclease HII [Thermoproteus tenax Kra 1]
gi|350275396|emb|CCC82043.1| Ribonuclease HII [Thermoproteus tenax Kra 1]
Length = 196
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 64/210 (30%), Positives = 98/210 (46%), Gaps = 30/210 (14%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFED-LKVNDS 74
+ GIDEAGRGP++GPMV + + L +L DSKTL ++R+ L+ L+ +
Sbjct: 3 VAGIDEAGRGPLVGPMVVAIV---AGDNERLRSLGVRDSKTLTPQRRKSLYSAVLQTAEC 59
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGD--A 132
V + V I+P + + + K+NL E + + I + + Y D A
Sbjct: 60 VNYIV--IEPAVID-QYVGSRKLNLLEAEAMAQL--------INLCEADAYYVDAPDPVA 108
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF 192
E++ LS + + V + P V+ ASIVAKV RD +L + E E
Sbjct: 109 ERFGRALSA--ATGRSVTALHKAERVPAVAAASIVAKVVRD-SLMELLRREMGE-----I 160
Query: 193 GSGYPGDHK---HIIFG--FPSLVRFSWGT 217
GSGYP D + + G P +R +W T
Sbjct: 161 GSGYPSDRRTLEAVRAGRVAPECLRRTWKT 190
>gi|345017759|ref|YP_004820112.1| ribonuclease HII/HIII [Thermoanaerobacter wiegelii Rt8.B1]
gi|344033102|gb|AEM78828.1| ribonuclease HII/HIII [Thermoanaerobacter wiegelii Rt8.B1]
Length = 242
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 65/213 (30%), Positives = 103/213 (48%), Gaps = 36/213 (16%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I G+DEAGRGP++GP+V C+ P + + DSK L E+KRE L E +K +
Sbjct: 60 IAGVDEAGRGPLVGPVVAACVILP----KEVFIPEINDSKKLSEKKREVLSEVIK-KVAT 114
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLN-IGILLTEVYLDTVGDAEK 134
+A+ I+D E+ +KIN+ ++ + I+++ I LL + T+ E
Sbjct: 115 SYAIGIVDCEEI-------DKINILNATYKAMQIAISKIQQKIDYLLVDAI--TIPQIEI 165
Query: 135 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGS 194
Q K +V K DS ++ ASI+AKV RD+ ++ + N +N
Sbjct: 166 NQ----------KAIV--KGDSKSISIAAASILAKVERDKIMKEYHKIYPQYNFEKN--K 211
Query: 195 GYPGDHKHIIFGFPSLVRFSWGTCTSHFKDIVE 227
GY G +HI +L + +G C H K +E
Sbjct: 212 GY-GTKEHI----EALKK--YGPCPIHRKTFIE 237
>gi|42527055|ref|NP_972153.1| ribonuclease HII [Treponema denticola ATCC 35405]
gi|81412195|sp|Q73MG1.1|RNH2_TREDE RecName: Full=Ribonuclease HII; Short=RNase HII
gi|41817479|gb|AAS12064.1| ribonuclease HII [Treponema denticola ATCC 35405]
Length = 198
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 94/197 (47%), Gaps = 30/197 (15%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+ GIDEAGRGP+ GP+ + P S+ ++ DSK L E+KREE+ + + + +V
Sbjct: 2 LCGIDEAGRGPLAGPVTAAAVILPSSFDFSI----LKDSKKLTEKKREEVRKTIYADPNV 57
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYL--DTVGDAE 133
WA+ E+ + + E +++ GL ++ L + ++ D + D
Sbjct: 58 IWAIGWASNYEIDEINILQATFLAMERAYE---GLYLKLQEFCKLNNDKFIEPDIIVDG- 113
Query: 134 KYQAKLSQRFPSIKFVVSKKA-----DSLYPVVSGASIVAKVTRDRTL--RGWIFEETAE 186
P+IK S KA DS+Y V++ ASI+AK RDR + WI+ E
Sbjct: 114 -------NFIPNIKNCSSIKALVKADDSVYEVMA-ASILAKTARDRMMIRYSWIYPEYGY 165
Query: 187 NMHRNFGSGYPGDHKHI 203
H+ +G+ KHI
Sbjct: 166 EKHKGYGT-----KKHI 177
>gi|373857306|ref|ZP_09600048.1| Ribonuclease H [Bacillus sp. 1NLA3E]
gi|372452956|gb|EHP26425.1| Ribonuclease H [Bacillus sp. 1NLA3E]
Length = 255
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 91/195 (46%), Gaps = 39/195 (20%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
I GIDE GRGP+ GP+V + P + DSK L E KREE ++ + + +
Sbjct: 73 LIAGIDEVGRGPLAGPVVAAAVILP----EDFLLFGIDDSKKLTETKREEYYDQI-MAKA 127
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
+ ++ I P E+ + IN+ E + + + ++ LDT D
Sbjct: 128 ISVSIGSISPEEI-------DNINIYEATKKAMLAAVSG------------LDTAPDFLL 168
Query: 135 YQA-KLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLR--GWIFEET--AENMH 189
A KL+ +P + K D+ ++ ASIVAKVTRDR ++ G ++ E A NM
Sbjct: 169 IDAMKLTSPYPYEAII---KGDAKSISIAAASIVAKVTRDRLMKEIGLVYPEYGFANNM- 224
Query: 190 RNFGSGYPGDHKHII 204
GY G +H+I
Sbjct: 225 -----GY-GTKEHLI 233
>gi|229098306|ref|ZP_04229253.1| Ribonuclease [Bacillus cereus Rock3-29]
gi|229117323|ref|ZP_04246701.1| Ribonuclease [Bacillus cereus Rock1-3]
gi|407706296|ref|YP_006829881.1| hypothetical protein MC28_3060 [Bacillus thuringiensis MC28]
gi|423378324|ref|ZP_17355608.1| ribonuclease HII [Bacillus cereus BAG1O-2]
gi|423448342|ref|ZP_17425221.1| ribonuclease HII [Bacillus cereus BAG5O-1]
gi|423464506|ref|ZP_17441274.1| ribonuclease HII [Bacillus cereus BAG6O-1]
gi|423540883|ref|ZP_17517274.1| ribonuclease HII [Bacillus cereus HuB4-10]
gi|423547121|ref|ZP_17523479.1| ribonuclease HII [Bacillus cereus HuB5-5]
gi|228666223|gb|EEL21687.1| Ribonuclease [Bacillus cereus Rock1-3]
gi|228685204|gb|EEL39135.1| Ribonuclease [Bacillus cereus Rock3-29]
gi|401128936|gb|EJQ36619.1| ribonuclease HII [Bacillus cereus BAG5O-1]
gi|401172071|gb|EJQ79292.1| ribonuclease HII [Bacillus cereus HuB4-10]
gi|401178842|gb|EJQ86015.1| ribonuclease HII [Bacillus cereus HuB5-5]
gi|401636590|gb|EJS54344.1| ribonuclease HII [Bacillus cereus BAG1O-2]
gi|402420773|gb|EJV53044.1| ribonuclease HII [Bacillus cereus BAG6O-1]
gi|407383981|gb|AFU14482.1| Ribonuclease [Bacillus thuringiensis MC28]
Length = 257
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 86/193 (44%), Gaps = 41/193 (21%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDE GRGP+ GP+V + P + DSK L E KRE ++++K ++
Sbjct: 74 IAGIDEVGRGPLAGPVVTAAVVLPDDF----YIPGLDDSKKLSEAKRERFYDEIKAQ-AI 128
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
V I+ P+ + ++IN+ + + + ++ V N+ + +D +
Sbjct: 129 AIGVGIVSPQVI-------DEINIYQATKQA---MLDAVANLSCTPQYLLIDAM------ 172
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 195
KL P + K D+ +S ASI+AKVTRDR M + G
Sbjct: 173 --KLPTSIPQTSII---KGDAKSVSISAASIIAKVTRDR-------------MMKELGEK 214
Query: 196 YP--GDHKHIIFG 206
YP G +H+ +G
Sbjct: 215 YPAYGFGQHMGYG 227
>gi|302380879|ref|ZP_07269341.1| ribonuclease HII [Finegoldia magna ACS-171-V-Col3]
gi|302311257|gb|EFK93276.1| ribonuclease HII [Finegoldia magna ACS-171-V-Col3]
Length = 207
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 103/219 (47%), Gaps = 32/219 (14%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDE GRGP+ GP+V + P + DSK L E+KR + F+D+ +N ++
Sbjct: 14 ICGIDEVGRGPLAGPVVTCAIIMP---KNCEIIEGVTDSKKLSEKKRIK-FKDMILNQAL 69
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
++VD +D + ++IN+ + + S + + + L V DAE+
Sbjct: 70 AYSVDFVDQGVI-------DEINIKQATRLSMKKAVESLKTKDNKFIKPDL-IVIDAEEI 121
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLR--GWIFEETAENMHRNFG 193
+ Q + FV K + LYP +S ASIVAKV RD ++ I+ + H+ +G
Sbjct: 122 DTDIKQ----MSFV--KGDEKLYP-ISCASIVAKVIRDEYMKEMAVIYPQYGFEKHKGYG 174
Query: 194 SGYPGDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWES 232
+ H+ +I +G C H K + L+E+
Sbjct: 175 TKL---HREMI--------LEYGECPLHRKTFLRKLYEN 202
>gi|83945341|ref|ZP_00957689.1| ribonuclease HII [Oceanicaulis sp. HTCC2633]
gi|83851175|gb|EAP89032.1| ribonuclease HII [Oceanicaulis alexandrii HTCC2633]
Length = 202
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/216 (27%), Positives = 96/216 (44%), Gaps = 37/216 (17%)
Query: 7 LPKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELF 66
+P+ P I G+DEAGRGP+ GP+V + P ++ A DSK L E++R L
Sbjct: 1 MPETRPTPLIAGVDEAGRGPLAGPVVCAAVILPANFS---ALDQLDDSKKLSEKRRAALS 57
Query: 67 EDLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYL 126
++ VG V I +P E+ +++N + H + ++ V +G++ E+ +
Sbjct: 58 AIIRAEARVG--VGIAEPVEI-------DRLN---VLHATMAAMVRAVEGLGVIPDEILI 105
Query: 127 DTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAE 186
D + A LS P+ V D + ASI+AK RD+ + AE
Sbjct: 106 ----DGNRVPAGLSA--PARAIV---GGDGREACIGAASIIAKTLRDQIM------IEAE 150
Query: 187 NMHRNFG----SGYPG-DHKHII--FGFPSLVRFSW 215
N +G GYP HK + G + R S+
Sbjct: 151 NRFSGYGLAGHKGYPSPSHKAALENLGAAPIHRLSY 186
>gi|452208016|ref|YP_007488138.1| ribonuclease H, type 2 [Natronomonas moolapensis 8.8.11]
gi|452084116|emb|CCQ37449.1| ribonuclease H, type 2 [Natronomonas moolapensis 8.8.11]
Length = 210
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 87/212 (41%), Gaps = 29/212 (13%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVG 76
G+DEAG+GPVLG M + P + L DSK L +RE L L+ +D VG
Sbjct: 3 FGVDEAGKGPVLGSMFAAAVRAP---RDALPD-GIDDSKRLSASRREALANRLRGDDRVG 58
Query: 77 WAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQ 136
+ I P + A +N L +H A + + G+ DA ++
Sbjct: 59 IGLAEITPERIDAGNMN----TLTVAAHVEAADAVVEAGDAGLCDAGDV-----DAGRFA 109
Query: 137 AKLSQRFPSIKFV-VSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 195
A++ + + + AD+ +V AS++AK R+R + + + GSG
Sbjct: 110 ARVEDGLGADATIDAAHGADASDSLVGAASVLAKSARERHV------ASLADRFGEVGSG 163
Query: 196 YPGDHKHIIF---------GFPSLVRFSWGTC 218
YP D F FP R SW TC
Sbjct: 164 YPSDPTTRSFLRRYVEEHGAFPPPTRRSWSTC 195
>gi|339480649|ref|ZP_08656308.1| ribonuclease HII [Leuconostoc pseudomesenteroides KCTC 3652]
Length = 262
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 85/181 (46%), Gaps = 28/181 (15%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDE GRGP+ GP++ + P ++ L+ DSK L +KRE+L+E +
Sbjct: 72 IAGIDEVGRGPLAGPIIAAAVILPHNFN----VLDVIDSKQLSAKKREDLYEKIMTQ--- 124
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRV-LNIGILLTEVYLDTVGDAEK 134
AV I E+ A ++ + IN+ E + + ++++ LN +LL DA +
Sbjct: 125 ALAVGI---GEVDATIV--DDINIYEAARMAMTIAVSKLQLNAEVLLI--------DAMR 171
Query: 135 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGS 194
+ Q F K D+ + ASIVAKVTRDR + + + RN G
Sbjct: 172 LDLDIPQEFLI-------KGDARSNSIGAASIVAKVTRDRLMTDYGLKYPGYGFERNAGY 224
Query: 195 G 195
G
Sbjct: 225 G 225
>gi|262038337|ref|ZP_06011718.1| ribonuclease HII [Leptotrichia goodfellowii F0264]
gi|261747641|gb|EEY35099.1| ribonuclease HII [Leptotrichia goodfellowii F0264]
Length = 205
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 68/225 (30%), Positives = 100/225 (44%), Gaps = 36/225 (16%)
Query: 1 MGSEAALPKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEE 60
MGS A + N I+G+DEAGRGP+ GP+V + Y + L +N DSK L E+
Sbjct: 1 MGSLAEFDN-SYNKIIVGVDEAGRGPLAGPVVAAAVII-IQYFKELDEIN--DSKKLSEK 56
Query: 61 KREELFEDLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGIL 120
KRE+LFE +K VG I D +E+ N +N + AI + + I+
Sbjct: 57 KREQLFELIKEKCIVGTG--IADEKEID----EINILNATFSAMRKAINEVKEKSDFDIV 110
Query: 121 LTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI 180
L +D KY+ + K DS ++ ASIVAKVTRD+ ++
Sbjct: 111 L----VDGNHKIRKYEGEQEAVI---------KGDSKSLSIAAASIVAKVTRDKMMKEMS 157
Query: 181 --FEETAENMHRNFGSGYPGDHKHIIFGFPSLVRFSWGTCTSHFK 223
F E + H+ + + H+ I+ G C H K
Sbjct: 158 EEFPEYRFDKHKGYATKL---HREIL--------LKKGPCKYHRK 191
>gi|386014752|ref|YP_005933029.1| ribonuclease HII RnhB [Pantoea ananatis AJ13355]
gi|327392811|dbj|BAK10233.1| ribonuclease HII RnhB [Pantoea ananatis AJ13355]
Length = 231
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 84/187 (44%), Gaps = 35/187 (18%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
CI G+DE GRGP++G +V + ADSK L E++R LF+ +K +
Sbjct: 34 CIAGVDEVGRGPLVGAVVTAAVI----LDPANPVPGLADSKKLSEKRRLALFDQIK-EKA 88
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
+ W++ +P E+ NLN I H + + + V + I V +D
Sbjct: 89 LAWSLGRAEPDEID---------NLN-ILHATMLAMQRAVAGLSITPDFVLID------- 131
Query: 135 YQAKLSQRFPSIKF--VVSKKADSLYPVVSGASIVAKVTRDRTLR--GWIFEETAENMHR 190
R P++ + K DSL +S ASI+AKVTRDR + +F + H+
Sbjct: 132 -----GNRCPALPMPSLAVVKGDSLVAEISAASIIAKVTRDREMAELDLLFPQYGFAQHK 186
Query: 191 NFGSGYP 197
GYP
Sbjct: 187 ----GYP 189
>gi|378768458|ref|YP_005196931.1| ribonuclease HII RnhB [Pantoea ananatis LMG 5342]
gi|386080579|ref|YP_005994104.1| ribonuclease HII RnhB [Pantoea ananatis PA13]
gi|354989760|gb|AER33884.1| ribonuclease HII RnhB [Pantoea ananatis PA13]
gi|365187944|emb|CCF10894.1| ribonuclease HII RnhB [Pantoea ananatis LMG 5342]
Length = 208
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 87/188 (46%), Gaps = 37/188 (19%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYC-PCSYQQTLATLNFADSKTLKEEKREELFEDLKVND 73
CI G+DE GRGP++G +V + P + LA DSK L E++R LF+ +K
Sbjct: 11 CIAGVDEVGRGPLVGAVVTAAVILDPANPVPGLA-----DSKKLSEKRRLALFDQIK-EK 64
Query: 74 SVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAE 133
++ W++ +P E+ NLN I H + + + V + I V +D
Sbjct: 65 ALAWSLGRAEPDEID---------NLN-ILHATMLAMQRAVAGLSITPDFVLID------ 108
Query: 134 KYQAKLSQRFPSIKF--VVSKKADSLYPVVSGASIVAKVTRDRTLR--GWIFEETAENMH 189
R P++ + K DSL +S ASI+AKVTRDR + +F + H
Sbjct: 109 ------GNRCPALPMPSLAVVKGDSLVAEISAASIIAKVTRDREMAELDLLFPQYGFAQH 162
Query: 190 RNFGSGYP 197
+ GYP
Sbjct: 163 K----GYP 166
>gi|256750728|ref|ZP_05491613.1| Ribonuclease H [Thermoanaerobacter ethanolicus CCSD1]
gi|256750311|gb|EEU63330.1| Ribonuclease H [Thermoanaerobacter ethanolicus CCSD1]
Length = 242
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 101/213 (47%), Gaps = 36/213 (16%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I G+DEAGRGP++GP+V C+ P + + DSK L EEKRE L E +K ++
Sbjct: 60 IAGVDEAGRGPLVGPVVAACVIFP----KDVFIPEINDSKKLSEEKREVLSEVIK-KVAI 114
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLN-IGILLTEVYLDTVGDAEK 134
++ I+D E+ +KIN+ ++ + I+++ I LL + T+ E
Sbjct: 115 SYSFGIVDCEEI-------DKINILNATYKAMQIAISKIQQKIDYLLVDAI--TIPQIEI 165
Query: 135 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGS 194
Q + K DS ++ ASI+AKV RD+ ++ + N +N
Sbjct: 166 NQKAIV------------KGDSKSISIAAASILAKVERDKMMKEYHKIYPQYNFEKN--K 211
Query: 195 GYPGDHKHIIFGFPSLVRFSWGTCTSHFKDIVE 227
GY G +HI +L + +G C H K +E
Sbjct: 212 GY-GTKEHI----EALKK--YGPCPIHRKTFIE 237
>gi|358066999|ref|ZP_09153485.1| hypothetical protein HMPREF9333_00365 [Johnsonella ignava ATCC
51276]
gi|356694848|gb|EHI56503.1| hypothetical protein HMPREF9333_00365 [Johnsonella ignava ATCC
51276]
Length = 228
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/227 (27%), Positives = 103/227 (45%), Gaps = 42/227 (18%)
Query: 9 KWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFED 68
K+ CI GIDEAGRGP+ GP+V C+ P + L DSK + +++R ELFE+
Sbjct: 40 KYDEYSCICGIDEAGRGPLAGPVVAACVILP----KDTEILFLNDSKKVTKKRRLELFEE 95
Query: 69 LKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDT 128
+ +V V IID + + IN+ ++++ I + +DT
Sbjct: 96 I-CYKAVDIGVGIIDENRI-------DDINILNATYEAMQKAIVK------------MDT 135
Query: 129 VGDAEKYQAKLSQRFPS--IKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW--IFEET 184
D A R P IK + + D+ ++ ASI+AKVTRD+ + + + E
Sbjct: 136 EPDILLVDA---VRIPDIGIKQISIIQGDARSVSIAAASIIAKVTRDKLMIEYDEQYPEY 192
Query: 185 AENMHRNFGSGYPGDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWE 231
H+ +G+ +HI + +R G C H K V+ ++
Sbjct: 193 GFAKHKGYGTT-----EHI-----AAIR-RHGACPIHRKSFVDKFFD 228
>gi|423441432|ref|ZP_17418338.1| ribonuclease HII [Bacillus cereus BAG4X2-1]
gi|423533848|ref|ZP_17510266.1| ribonuclease HII [Bacillus cereus HuB2-9]
gi|402418093|gb|EJV50393.1| ribonuclease HII [Bacillus cereus BAG4X2-1]
gi|402464067|gb|EJV95767.1| ribonuclease HII [Bacillus cereus HuB2-9]
Length = 257
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 86/193 (44%), Gaps = 41/193 (21%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDE GRGP+ GP+V + P + DSK L E KRE ++++K ++
Sbjct: 74 IAGIDEVGRGPLAGPVVTAAVVLPDDF----YIPGLDDSKKLSEAKRERFYDEIKAQ-AI 128
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
V I+ P+ + ++IN+ + + + ++ V N+ + +D +
Sbjct: 129 AIGVGIVSPQVI-------DEINIYQATKKA---MLDAVANLSCTPQYLLIDAM------ 172
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 195
KL P + K D+ +S ASI+AKVTRDR M + G
Sbjct: 173 --KLPTSIPQTSII---KGDAKSVSISAASIIAKVTRDR-------------MMKELGEK 214
Query: 196 YP--GDHKHIIFG 206
YP G +H+ +G
Sbjct: 215 YPAYGFGQHMGYG 227
>gi|225180946|ref|ZP_03734394.1| Ribonuclease H [Dethiobacter alkaliphilus AHT 1]
gi|225168427|gb|EEG77230.1| Ribonuclease H [Dethiobacter alkaliphilus AHT 1]
Length = 260
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 69/217 (31%), Positives = 101/217 (46%), Gaps = 46/217 (21%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I G+DEAGRGP+ GP+V G + P ++ LA LN DSK L +KREEL+E + +++V
Sbjct: 78 IAGVDEAGRGPLAGPVVAGAVILPDNF--FLAGLN--DSKKLTPQKREELYEAI-TSEAV 132
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
W+V I + E+ + IN+ + S ++ LLT L D
Sbjct: 133 AWSVGIGEVWEI-------DDINILQAS---------KLAMYRALLT---LSVKPDYALL 173
Query: 136 QAKLSQRFP-SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG- 193
A + P + + VV D L ++ AS+VAKVTRDR + E M+ +G
Sbjct: 174 DALELEELPFAQQGVVG--GDGLSLSIAAASVVAKVTRDRLMC------EQEKMYPGYGF 225
Query: 194 ---SGYP-GDHKHIIFGFPSLVRFSWGTCTSHFKDIV 226
GYP +H+ I G C H K +
Sbjct: 226 SLHKGYPTAEHRSAIAKL--------GPCPIHRKSFL 254
>gi|291616360|ref|YP_003519102.1| RnhB [Pantoea ananatis LMG 20103]
gi|291151390|gb|ADD75974.1| RnhB [Pantoea ananatis LMG 20103]
Length = 215
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 84/187 (44%), Gaps = 35/187 (18%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
CI G+DE GRGP++G +V + ADSK L E++R LF+ +K +
Sbjct: 18 CIAGVDEVGRGPLVGAVVTAAVI----LDPANPVPGLADSKKLSEKRRLALFDQIK-EKA 72
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
+ W++ +P E+ NLN I H + + + V + I V +D
Sbjct: 73 LAWSLGRAEPDEID---------NLN-ILHATMLAMQRAVAGLSITPDFVLID------- 115
Query: 135 YQAKLSQRFPSIKF--VVSKKADSLYPVVSGASIVAKVTRDRTLR--GWIFEETAENMHR 190
R P++ + K DSL +S ASI+AKVTRDR + +F + H+
Sbjct: 116 -----GNRCPALPMPSLAVVKGDSLVAEISAASIIAKVTRDREMAELDLLFPQYGFAQHK 170
Query: 191 NFGSGYP 197
GYP
Sbjct: 171 ----GYP 173
>gi|210615856|ref|ZP_03290818.1| hypothetical protein CLONEX_03037 [Clostridium nexile DSM 1787]
gi|210150059|gb|EEA81068.1| hypothetical protein CLONEX_03037 [Clostridium nexile DSM 1787]
Length = 252
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 84/172 (48%), Gaps = 27/172 (15%)
Query: 9 KWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFED 68
K+A I GIDE GRGP+ GP+V G + P + L DSK L E++REEL+++
Sbjct: 65 KYAHFSYICGIDEVGRGPLAGPVVAGAVILP----KDCEILYLNDSKKLSEKRREELYDE 120
Query: 69 LKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLD- 127
+ + ++ + I+ P + ++IN+ + ++++ + I I E D
Sbjct: 121 I-MEKAIATGIGIVSPARI-------DEINILQATYEA--------MRIAIQQLETEPDL 164
Query: 128 TVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW 179
+ DA + P I K D+ ++ ASI+AKVTRDR + +
Sbjct: 165 LLNDAVTIPGVTIDQVPII------KGDAKSVSIAAASIIAKVTRDRLMVQY 210
>gi|415886554|ref|ZP_11548334.1| ribonuclease HII [Bacillus methanolicus MGA3]
gi|387587241|gb|EIJ79564.1| ribonuclease HII [Bacillus methanolicus MGA3]
Length = 259
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 90/183 (49%), Gaps = 32/183 (17%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDEAGRGP+ GP+V + P + L ++ DSK L + KREEL+E + + +V
Sbjct: 73 IAGIDEAGRGPLAGPVVAAAVILPPEF--YLPGID--DSKKLSKAKREELYEMITSSGAV 128
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
+ ++D E+ ++IN++E + + + IT LDT D
Sbjct: 129 -IGIGMVDSDEI-------DRINISEAAKKAMLEAITN------------LDTHPDCLLI 168
Query: 136 QA-KLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLR--GWIFEETAENMHRNF 192
A KL +PS + K D+ ++ ASIVAKV RD ++ G +F + +N
Sbjct: 169 DAIKLDTPYPSESII---KGDAKSVSIAAASIVAKVVRDNYMKEIGLLF--PSYGFEKNM 223
Query: 193 GSG 195
G G
Sbjct: 224 GYG 226
>gi|260889965|ref|ZP_05901228.1| ribonuclease HII [Leptotrichia hofstadii F0254]
gi|260860571|gb|EEX75071.1| ribonuclease HII [Leptotrichia hofstadii F0254]
Length = 198
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 68/217 (31%), Positives = 98/217 (45%), Gaps = 43/217 (19%)
Query: 13 NPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVN 72
N ++G+DEAGRGP+ GP+V G + + + L +N DSK L E+KRE LFE ++ N
Sbjct: 8 NKIVVGVDEAGRGPLAGPVVAGAVIVIQDFPE-LQEIN--DSKKLTEKKRERLFEAIEKN 64
Query: 73 DSVGWAV----DIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDT 128
VG + +I + L+A L + +N+++ SA + VL G L Y
Sbjct: 65 CIVGIGIASEKEIDEMNILNATFLAMRR-AINQVAEKSAFDI---VLVDGNHLIREY--- 117
Query: 129 VGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTL--RGWIFEETAE 186
G+ E K DS ++ ASIVAKVTRDR L F E
Sbjct: 118 EGEQE----------------CIVKGDSKSLAIATASIVAKVTRDRILCEIAKEFPEYEF 161
Query: 187 NMHRNFGSGYPGDHKHIIFGFPSLVRFSWGTCTSHFK 223
H+ +G+ H+ I+ G C H K
Sbjct: 162 EKHKGYGT---KKHRQIL--------LEKGACKYHRK 187
>gi|398347238|ref|ZP_10531941.1| ribonuclease H [Leptospira broomii str. 5399]
Length = 221
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 64/195 (32%), Positives = 90/195 (46%), Gaps = 31/195 (15%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCL-YCPCSYQQTLATLNFA---DSKTLKEEKREELFEDL 69
PC GIDEAGRGP GP+ + + P + L N + DSK L E KRE L+ +
Sbjct: 19 PC--GIDEAGRGPYAGPLSLALVAFSPEILESILVGKNLSGLNDSKKLSESKREMLYSQI 76
Query: 70 KVNDSVGWAVDIIDPRELSAKMLNKNKIN---LNEISHDSAIGLITRVLNIGILLTEVYL 126
+ S+ + S +++N IN L I + L T + +G LT + +
Sbjct: 77 RDVASICCHTFV------SHSFIDRNGINRAVLEGIWKCYRMALRTPIAIVGGSLT-LLI 129
Query: 127 DTVGDAEKYQAKLSQRFPSIKFVVSK-----KADSLYPVVSGASIVAKVTRDRTLRGWI- 180
D + KY P KF+ SK K DS +S ASI+AKVTRDR ++G
Sbjct: 130 DGNYNFSKY--------PESKFISSKSHYYTKGDSRIVSISAASIIAKVTRDRWMKGIAG 181
Query: 181 -FEETAENMHRNFGS 194
F H+ +GS
Sbjct: 182 KFPGYGFESHKGYGS 196
>gi|448490375|ref|ZP_21607963.1| ribonuclease HII [Halorubrum californiensis DSM 19288]
gi|445693979|gb|ELZ46117.1| ribonuclease HII [Halorubrum californiensis DSM 19288]
Length = 236
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 57/226 (25%), Positives = 86/226 (38%), Gaps = 31/226 (13%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVG 76
+G+DEAG+GP LGPM + T + DSK + +REE+ L+ + +V
Sbjct: 3 LGVDEAGKGPALGPMAAAAVIA----DPTSLPADVDDSKRIAPARREEMATALRDDPAVA 58
Query: 77 WAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITR----------VLNIGILLTEVYL 126
V ++P E+ + N + + + L R V + G E +
Sbjct: 59 VGVARVEPTEIDRPDTDMNTLTVRGQARAVRDALADRPAETAEPVRVVADAGDTSEERFA 118
Query: 127 DTV-----GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIF 181
+ + GD P++ + AD PVV AS+VAK R
Sbjct: 119 ERLVRFVEGDDADESVGDGISLPAVDVTAAHGADGDDPVVGAASVVAKTVR---DAAMAD 175
Query: 182 EETAENMHRNFGSGYPGDHKHIIF---------GFPSLVRFSWGTC 218
+ A + + GSGYP D F P R SW TC
Sbjct: 176 IDAAYPDYDDLGSGYPSDPATRSFLAAYVGDHETLPDCARTSWSTC 221
>gi|333371167|ref|ZP_08463129.1| ribonuclease HII [Desmospora sp. 8437]
gi|332976611|gb|EGK13452.1| ribonuclease HII [Desmospora sp. 8437]
Length = 264
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 96/220 (43%), Gaps = 35/220 (15%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
I G+DEAGRGP+ GP+V + P + T DSK L E+RE L ++ D+
Sbjct: 74 AIAGVDEAGRGPLAGPVVAAAVILPLGFDAT----GLNDSKKLSPEERESLRVRIE-RDA 128
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
V + + D R + ++ N+ + ++++ + V ++ + LD V E
Sbjct: 129 VAVGIGVADHRYI-------DEHNILQATYEA---MRRAVADLSPAADCLLLDAVEVPEL 178
Query: 135 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGS 194
+ P V K D+L ++ AS++AK RDR + + +N G
Sbjct: 179 F-------LPQHPIV---KGDALSHSIAAASVIAKTFRDRCMTAAGKKYPQYGFEKNMGY 228
Query: 195 GYPGDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWESDE 234
G P DH +L R WGTC H K V E DE
Sbjct: 229 GTP-DH------LAALER--WGTCPIHRKSFAPV-RERDE 258
>gi|302386482|ref|YP_003822304.1| Ribonuclease H [Clostridium saccharolyticum WM1]
gi|302197110|gb|ADL04681.1| Ribonuclease H [Clostridium saccharolyticum WM1]
Length = 213
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 93/189 (49%), Gaps = 27/189 (14%)
Query: 9 KWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFED 68
++ + GIDEAGRGP+ GP+V G + P + L DSK L E++RE LFE+
Sbjct: 25 QYEDQVLVCGIDEAGRGPLAGPVVAGAVILP----RDCEILFLNDSKKLSEKRREALFEE 80
Query: 69 LKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDT 128
+ + + +AV ++ + ++IN+ + +++ A+ L L I V+L+
Sbjct: 81 I-MEKASAFAVGVVGADRI-------DEINILQATYE-AMRLAVAKLEIE---PNVFLN- 127
Query: 129 VGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW--IFEETAE 186
DA + + P I K D ++ ASI+AKVTRD + + +F E
Sbjct: 128 --DAVTIPGIAASQVPII------KGDGKSVSIAAASIMAKVTRDHMMEEYDKLFPEYGF 179
Query: 187 NMHRNFGSG 195
+ H+ +G+
Sbjct: 180 SRHKGYGTA 188
>gi|448318842|ref|ZP_21508353.1| ribonuclease HII [Natronococcus jeotgali DSM 18795]
gi|445597681|gb|ELY51754.1| ribonuclease HII [Natronococcus jeotgali DSM 18795]
Length = 220
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 58/220 (26%), Positives = 85/220 (38%), Gaps = 25/220 (11%)
Query: 18 GIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGW 77
G+DEAG+GP LG M + P + ADSK L E+REEL L+ +D +
Sbjct: 4 GVDEAGKGPALGSMFAAAVRVP---EPDALPEGIADSKRLAPERREELAAILREDDRIAI 60
Query: 78 AVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG-DAEKYQ 136
V I P + + N + + + G D DA+++
Sbjct: 61 GVSEIAPETIDDPETDMNSLAVRAHAEAIE---AALEAADGPTAPSGLCDACDTDADRFA 117
Query: 137 AKLSQRFP---SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG 193
+++ ++ + AD P+V AS+VAKV RD ++ E + G
Sbjct: 118 RRVADACDLEGDLELAAAHGADDADPIVGAASVVAKVERDASMAALADE------YGPVG 171
Query: 194 SGYPGDHKHIIF---------GFPSLVRFSWGTCTSHFKD 224
SGYP D F P R SW TC D
Sbjct: 172 SGYPSDPTTRTFLESYVADRGELPPFARASWSTCEDVLAD 211
>gi|189499018|ref|YP_001958488.1| ribonuclease HII [Chlorobium phaeobacteroides BS1]
gi|189494459|gb|ACE03007.1| Ribonuclease H [Chlorobium phaeobacteroides BS1]
Length = 207
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 57/218 (26%), Positives = 99/218 (45%), Gaps = 41/218 (18%)
Query: 10 WASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL 69
W + C+ GIDEAGRGP+ GP+V + P ++ DSKTL+ ++R L E +
Sbjct: 13 WHEHTCVCGIDEAGRGPLAGPVVAAAVMFPRYFKPEGVLTGLNDSKTLRPKQRSALAEAI 72
Query: 70 KVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 129
+ + + +++ IID + + N N ++ ++A + ++ G+LL
Sbjct: 73 Q-SAAECFSISIIDHTTID----SVNIFNATMLAMNAAAEKLEQLP--GLLLI------- 118
Query: 130 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH 189
D ++ L I ++ K D+ ++ ASI+AK RDR + + H
Sbjct: 119 -DGNRFVPSL-----PIPYLTIVKGDTKVVSIAAASILAKTCRDRIMNEY---------H 163
Query: 190 RNFGSGYP--GDHKHIIFGFPSLVRFS----WGTCTSH 221
R YP G +H FG+P+ + +G C H
Sbjct: 164 RE----YPEYGFAQH--FGYPTQAHIAAIARYGRCPIH 195
>gi|160939135|ref|ZP_02086486.1| hypothetical protein CLOBOL_04029 [Clostridium bolteae ATCC
BAA-613]
gi|158438098|gb|EDP15858.1| hypothetical protein CLOBOL_04029 [Clostridium bolteae ATCC
BAA-613]
Length = 222
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 103/220 (46%), Gaps = 38/220 (17%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDEAGRGP+ GP+ G + P + L DSK L E++REELF ++K +V
Sbjct: 36 ICGIDEAGRGPLAGPVAAGAVVLP----KGCRILYLNDSKKLSEKRREELFLEIK-EKAV 90
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
W V + P + ++IN+ + +++ A+ + L++ EV L+ DA
Sbjct: 91 AWNVGLASPARI-------DEINILQATYE-AMREAVKGLSVK---PEVLLN---DAVTI 136
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW--IFEETAENMHRNFG 193
+ P I K D+ ++ ASI+AKVTRD + + +F H+ +G
Sbjct: 137 PGLEGVQVPII------KGDAKSLSIAAASILAKVTRDHMMAEYEELFPGYGFAKHKGYG 190
Query: 194 SGYPGDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWESD 233
+ HI + +R G C H + + + ++D
Sbjct: 191 TA-----AHI-----AAIR-ELGPCPIHRRSFIRNIVQAD 219
>gi|390937865|ref|YP_006401603.1| RNase HII [Desulfurococcus fermentans DSM 16532]
gi|390190972|gb|AFL66028.1| RNase HII [Desulfurococcus fermentans DSM 16532]
Length = 255
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 93/196 (47%), Gaps = 32/196 (16%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVG 76
+G+DEAGRGP +G MV + S ++L ++ DSK L+ KR + N+ +
Sbjct: 9 IGVDEAGRGPFIGDMVIAGVIGLSSTFESLVSIGLRDSKLLEPLKRLIIL-----NNMLS 63
Query: 77 WAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILL------TEVYLDTVG 130
+DI+ ++ ++ N+N + + G++ + IL +Y+D V
Sbjct: 64 LDIDIV---ATYVSPIHIDRSNMNMLEYTVICGILKYLSYSHILRQHQDAGVRIYIDEV- 119
Query: 131 DAEKYQAKLSQ-----RFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW--IFEE 183
+ Y K+ + +++ + +AD+ YP VS AS+VAK+ RD ++ I E
Sbjct: 120 --KGYNGKIGECARGLYRGNVEIFIESRADAKYPAVSAASVVAKILRDSNIKALQVIAGE 177
Query: 184 TAENMHRNFGSGYPGD 199
T GSGYP D
Sbjct: 178 T--------GSGYPSD 185
>gi|385805443|ref|YP_005841841.1| Ribonuclease HII (rnhB) [Fervidicoccus fontis Kam940]
gi|383795306|gb|AFH42389.1| Ribonuclease HII (rnhB) [Fervidicoccus fontis Kam940]
Length = 200
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 63/196 (32%), Positives = 99/196 (50%), Gaps = 30/196 (15%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVND 73
P +GIDEAGRG ++G M + ++ DSK L + KRE+L+ D+ ++
Sbjct: 5 PITLGIDEAGRGCMIGSMFVAGVVIDDRAEKVFKKYGVKDSKKLSKNKREKLY-DIITSN 63
Query: 74 SVGWAVDIIDPRELSAKMLNKNKIN-LNEISHDSA--IGLITRVLNIGILLTEVYLDTVG 130
++ + V + P E+ + +N I + +I++D+ I + R++ D VG
Sbjct: 64 ALWFEVVEVTPLEIDNQNINYLTIRAMRKIANDATKEIKYLNRII----------ADIVG 113
Query: 131 DAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHR 190
+ KL + +I+ +V KKAD + V+ ASIVAKV RDR L E +
Sbjct: 114 KGD---FKLVES-DNIEQLVLKKADENFIAVAAASIVAKVQRDRAL---------EQIRN 160
Query: 191 NF---GSGYPGDHKHI 203
NF GSGYPGD K +
Sbjct: 161 NFGLIGSGYPGDKKSV 176
>gi|331091010|ref|ZP_08339852.1| hypothetical protein HMPREF9477_00495 [Lachnospiraceae bacterium
2_1_46FAA]
gi|330405232|gb|EGG84768.1| hypothetical protein HMPREF9477_00495 [Lachnospiraceae bacterium
2_1_46FAA]
Length = 252
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 86/166 (51%), Gaps = 29/166 (17%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDE GRGP+ GP+V G + P + + LN DSK L E+KREEL+ D+ + +V
Sbjct: 72 ICGIDEVGRGPLAGPVVAGAVILPKD--EMILYLN--DSKKLSEKKREELY-DIIMERAV 126
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
+ I+ P + ++IN+ + ++++ + + N+ + T + D V
Sbjct: 127 AAGIGIVSPARI-------DEINILQATYEA---MRMAIDNLKVQPTLLLNDAVT----- 171
Query: 136 QAKLSQRFPS--IKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW 179
PS I+ + K D+ ++ ASI+AKVTRDR ++ +
Sbjct: 172 -------IPSVNIRQIPIIKGDAKSVSIAAASIIAKVTRDRLMKEY 210
>gi|448641404|ref|ZP_21678014.1| ribonuclease HII [Haloarcula sinaiiensis ATCC 33800]
gi|445760818|gb|EMA12074.1| ribonuclease HII [Haloarcula sinaiiensis ATCC 33800]
Length = 211
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 99/213 (46%), Gaps = 30/213 (14%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVN-DSV 75
G+DEAG+GPVLG M DSK ++ E+RE L ++++ + D+V
Sbjct: 3 FGVDEAGKGPVLGSM----FAAAVRADPAALPGGVGDSKDIRPERRERLAKEIRESADAV 58
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
G A E+S + ++ ++ ++N ++ + ++ V G+ T DT DA ++
Sbjct: 59 GIA-------EISVERIDADETDMNTLTVEGQAEALSAVARDGLSGTVDAGDT--DAARF 109
Query: 136 QAKLSQRFPSIKFVVSKK-ADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGS 194
+++ + V ++ AD +V ASI+AKV RD + E AE + + GS
Sbjct: 110 GRRVADAVDADVAVTAEHGADETDSLVGAASIIAKVARDT----HVAELAAE--YGDVGS 163
Query: 195 GYPGDHKHIIF---------GFPSLVRFSWGTC 218
GYP D F P+ R SW TC
Sbjct: 164 GYPSDPTTRTFLADYVDRHGELPACARRSWSTC 196
>gi|448654674|ref|ZP_21681600.1| ribonuclease HII [Haloarcula californiae ATCC 33799]
gi|445766522|gb|EMA17649.1| ribonuclease HII [Haloarcula californiae ATCC 33799]
Length = 211
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 99/213 (46%), Gaps = 30/213 (14%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVN-DSV 75
G+DEAG+GPVLG M DSK ++ E+RE L ++++ + D+V
Sbjct: 3 FGVDEAGKGPVLGSM----FAAAVRADPAALPGGVGDSKDIRPERRERLAKEIRESADAV 58
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
G A E+S + ++ ++ ++N ++ + ++ V G+ T DT DA ++
Sbjct: 59 GIA-------EISVERIDADETDMNTLTVEGQAEALSAVARDGLSGTVDAGDT--DAARF 109
Query: 136 QAKLSQRFPSIKFVVSKK-ADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGS 194
+++ + V ++ AD +V ASI+AKV RD + E AE + + GS
Sbjct: 110 GRRVADAVDADVAVTAEHGADETDSLVGAASIIAKVARDT----HVAELAAE--YGDVGS 163
Query: 195 GYPGDHKHIIF---------GFPSLVRFSWGTC 218
GYP D F P+ R SW TC
Sbjct: 164 GYPSDPTTRTFLSDYVDRHGELPACARRSWSTC 196
>gi|334142196|ref|YP_004535403.1| ribonuclease HII [Novosphingobium sp. PP1Y]
gi|333940227|emb|CCA93585.1| ribonuclease HII [Novosphingobium sp. PP1Y]
Length = 211
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 84/184 (45%), Gaps = 18/184 (9%)
Query: 12 SNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKV 71
S ++G+DEAGRGP+ GP+V G + C + + DSK L + +R +L E +K
Sbjct: 15 SGGIVIGVDEAGRGPLAGPVVAGAVLL-CKPRPS----GLDDSKKLSKARRLQLEEVIK- 68
Query: 72 NDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGD 131
WAV ++D E+ N ++ A+ + NIG EV +D G+
Sbjct: 69 -RRCQWAVGVVDVEEID----RLNIFGATMLAMTRAVAALCD--NIGTEPDEVLVD--GN 119
Query: 132 AEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRN 191
+ + R+ + V D+L P +S ASI+AK RD +RG RN
Sbjct: 120 MTPHGRREEWRWKARAIV---GGDALEPCISAASIIAKEHRDAIMRGLAAVHPQYGWERN 176
Query: 192 FGSG 195
G G
Sbjct: 177 AGYG 180
>gi|357053019|ref|ZP_09114123.1| ribonuclease HII [Clostridium clostridioforme 2_1_49FAA]
gi|355386444|gb|EHG33484.1| ribonuclease HII [Clostridium clostridioforme 2_1_49FAA]
Length = 218
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 60/221 (27%), Positives = 104/221 (47%), Gaps = 40/221 (18%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDEAGRGP+ GP+ G + P + L DSK L E++RE+LF ++K +V
Sbjct: 34 ICGIDEAGRGPLAGPVAAGAVVLP----KGCRILYLNDSKKLSEKRREDLFLEIK-EKAV 88
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILL-TEVYLDTVGDAEK 134
W V + P + ++IN+ + ++++ R G+ + E+ L+ DA
Sbjct: 89 AWNVGLATPARI-------DEINILQATYEA-----MREAVKGLAVKPEILLN---DAVT 133
Query: 135 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW--IFEETAENMHRNF 192
+ + P I K D+ ++ AS++AKVTRD + G+ +F H+ +
Sbjct: 134 IPGLDAVQVPII------KGDAKSLSIAAASVLAKVTRDHMMAGYEELFPGYGFAKHKGY 187
Query: 193 GSGYPGDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWESD 233
G+ HI + +R G C H + + + ++D
Sbjct: 188 GT-----VAHI-----AAIR-ELGPCPIHRRSFIRNIIQAD 217
>gi|82701801|ref|YP_411367.1| ribonuclease H [Nitrosospira multiformis ATCC 25196]
gi|97189026|sp|Q2YB96.1|RNH2_NITMU RecName: Full=Ribonuclease HII; Short=RNase HII
gi|82409866|gb|ABB73975.1| RNase HII [Nitrosospira multiformis ATCC 25196]
Length = 199
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 79/182 (43%), Gaps = 40/182 (21%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCLYC-PCSYQQTLATLNFADSKTLKEEKREELFEDLKVN 72
P + G+DEAGRGP+ GP+ C+ P S L ADSKTL E KR L +K
Sbjct: 7 PWVCGVDEAGRGPLAGPVFAACVILDPASPIDGL-----ADSKTLTEGKRNSLTLAIKAY 61
Query: 73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
S+ WA+ RE+ N + + ++ AIG + + V +D
Sbjct: 62 -SIAWAIGFASVREID----RLNILQASLLAMKRAIG------KLPVTPARVLVD----- 105
Query: 133 EKYQAKLSQRFPSIKFVVSK--KADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHR 190
P +KF V+ + DSL P +S ASI+AK RD + +HR
Sbjct: 106 -------GNHSPRLKFPVTTIVRGDSLVPEISAASILAKTARDAEMMA---------LHR 149
Query: 191 NF 192
F
Sbjct: 150 RF 151
>gi|358064077|ref|ZP_09150666.1| ribonuclease HII [Clostridium hathewayi WAL-18680]
gi|356697710|gb|EHI59281.1| ribonuclease HII [Clostridium hathewayi WAL-18680]
Length = 212
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 92/182 (50%), Gaps = 27/182 (14%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDEAGRGP+ GP+V G + P Q L DSK + E+KRE LF++++ +V
Sbjct: 32 ICGIDEAGRGPLAGPVVAGAVILPKDCQ----ILYLNDSKKVSEKKRELLFDEIR-GKAV 86
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
+ + ++ P + ++IN+ + ++++ ++++ E+ L+ DA
Sbjct: 87 SYGIGVVGPGRI-------DEINILQATYEAMREAVSQLQP----APEILLN---DAVTI 132
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW--IFEETAENMHRNFG 193
+ P + K D+ ++ ASI+AKVTRDR + + ++ E H+ +G
Sbjct: 133 PGIDLMQIPIV------KGDAKSVSIAAASILAKVTRDRMMVEYDALYPEYGFVKHKGYG 186
Query: 194 SG 195
+
Sbjct: 187 TA 188
>gi|375111099|ref|ZP_09757310.1| ribonuclease H [Alishewanella jeotgali KCTC 22429]
gi|374568641|gb|EHR39813.1| ribonuclease H [Alishewanella jeotgali KCTC 22429]
Length = 200
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 87/190 (45%), Gaps = 43/190 (22%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I G+DE GRGP++G +V + + L DSK L E+KR+ L E++K ++
Sbjct: 11 IAGVDEVGRGPLIGAVVTAAVILDPAQP----ILGLTDSKKLTEKKRQLLAEEIKAK-AL 65
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
WA+ +P E+ +++N I H + + + V + I V +D
Sbjct: 66 CWALGRAEPAEI-------DQLN---ILHATMLAMQRAVAALAIQPEWVLID-------- 107
Query: 136 QAKLSQRFPSIKFVVSK--KADSLYPVVSGASIVAKVTRDRTLRGWIFEETAE--NMHRN 191
R P++ S K DSL P +S ASI+AKV RD +E AE ++
Sbjct: 108 ----GNRCPALAMPASAVVKGDSLVPEISAASILAKVARD--------QEMAELDQLYPQ 155
Query: 192 FG----SGYP 197
FG GYP
Sbjct: 156 FGFAAHKGYP 165
>gi|218883330|ref|YP_002427712.1| Ribonuclease HII [Desulfurococcus kamchatkensis 1221n]
gi|218764946|gb|ACL10345.1| Ribonuclease HII [Desulfurococcus kamchatkensis 1221n]
Length = 255
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 97/197 (49%), Gaps = 34/197 (17%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVG 76
+G+DEAGRGP +G MV + S ++L ++ DSK L+ KR + N+ +
Sbjct: 9 IGVDEAGRGPFIGDMVIAGVIGLSSAFESLVSIGLRDSKLLEPLKRLMIL-----NNMLS 63
Query: 77 WAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTE-------VYLDTV 129
+DI+ +S ++++ +N+ E + I I + L+ +L + +Y+D V
Sbjct: 64 LDIDIV-ATYVSPIHIDRSNMNMLEY---TVICSILKYLSYSHILRQHQGTGVRIYIDEV 119
Query: 130 GDAEKYQAKLSQ-----RFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW--IFE 182
+ Y K+ + +++ + +AD+ YP VS AS+VAK+ RD ++ I
Sbjct: 120 ---KGYNDKIGECARGLYRGNVEIFIESRADAKYPAVSAASVVAKILRDSNIKALQVIAG 176
Query: 183 ETAENMHRNFGSGYPGD 199
ET GSGYP D
Sbjct: 177 ET--------GSGYPSD 185
>gi|392428769|ref|YP_006469780.1| ribonuclease HII [Streptococcus intermedius JTH08]
gi|419776581|ref|ZP_14302503.1| ribonuclease HII [Streptococcus intermedius SK54]
gi|383845992|gb|EID83392.1| ribonuclease HII [Streptococcus intermedius SK54]
gi|391757915|dbj|BAM23532.1| ribonuclease HII [Streptococcus intermedius JTH08]
Length = 258
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 88/181 (48%), Gaps = 26/181 (14%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
CI GIDE GRGP+ GP+V + P + + + LN DSK + ++K E +++++ + +
Sbjct: 71 CIAGIDEVGRGPLAGPVVAAAVILPKNSK--IKGLN--DSKKISKKKHETIYQEV-LKQA 125
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
+ + I D + + +++N+ E + + +I V N+ I + +D +
Sbjct: 126 IAIGIGIKDNQVI-------DEVNIYEA---TKLAMIEAVGNLKITPQHLLIDAM----- 170
Query: 135 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGS 194
KL + P + K D+ ++ ASIVAKVTRDR + + + N G
Sbjct: 171 ---KLDLQIPQTSII---KGDANSLSIAAASIVAKVTRDRMMTDYDLTYPGYDFAHNVGY 224
Query: 195 G 195
G
Sbjct: 225 G 225
>gi|217970566|ref|YP_002355800.1| ribonuclease HII [Thauera sp. MZ1T]
gi|217507893|gb|ACK54904.1| Ribonuclease H [Thauera sp. MZ1T]
Length = 203
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 80/179 (44%), Gaps = 29/179 (16%)
Query: 1 MGSEAALPKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEE 60
M +E P S+ I G+DEAGRGP+ GP+V + ADSK L E
Sbjct: 1 MNAELFDPGLPSSSLICGVDEAGRGPLCGPVVAAAVI----LDPARPIEGLADSKKLSEA 56
Query: 61 KREELFEDLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGIL 120
RE L ++ ++ WAV E S + +++ LN I H + + + V+ +GI
Sbjct: 57 ARERLAPLIRAR-ALAWAVA-----EASVEEIDR----LN-ILHATMLAMQRAVMALGIA 105
Query: 121 LTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSK--KADSLYPVVSGASIVAKVTRDRTLR 177
EV +D R P + + K D+ P +S ASI+AK RD +R
Sbjct: 106 PAEVRID------------GNRCPKLPYPARAIVKGDATEPSISAASILAKTARDAAMR 152
>gi|227326550|ref|ZP_03830574.1| ribonuclease HII [Pectobacterium carotovorum subsp. carotovorum
WPP14]
Length = 198
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 79/164 (48%), Gaps = 29/164 (17%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
CI G+DE GRGP++G +V + T + ADSK L E++R L++++K +
Sbjct: 12 CIAGVDEVGRGPLVGAVVTAAVIL----DPTRPIVGLADSKQLSEKRRLSLYDEIK-EKA 66
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
+ W++ +P E+ +++N I H + + + V + I+ V +D
Sbjct: 67 LAWSLGRAEPEEI-------DQLN---ILHATMLAMQRAVAGLAIVPDFVLID------- 109
Query: 135 YQAKLSQRFPSIKFVVSK--KADSLYPVVSGASIVAKVTRDRTL 176
R P++ K DS +S ASI+AKVTRDR +
Sbjct: 110 -----GNRCPALPMSAQAVVKGDSRVAEISAASIMAKVTRDREM 148
>gi|126459394|ref|YP_001055672.1| ribonuclease HII [Pyrobaculum calidifontis JCM 11548]
gi|126249115|gb|ABO08206.1| RNase HII [Pyrobaculum calidifontis JCM 11548]
Length = 207
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 63/208 (30%), Positives = 96/208 (46%), Gaps = 30/208 (14%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFED-LKVNDS 74
I G+DEAGRGP++GP+V + L + DSK L RE +F L+V +
Sbjct: 16 IGGVDEAGRGPLVGPLVIAVV---VGDSDVLLGVGVRDSKALSPGARERVFARVLEVAEC 72
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA-- 132
V + V ++P + +K +N EI + + + + +VY D
Sbjct: 73 VNYIV--VEP-HIVDMYTSKGLLNALEIDYTAKL--------LATCPADVYYVDSPDVKP 121
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF 192
E+Y + LS + K +V+ P V+ ASIVAKV RDR + + + +F
Sbjct: 122 ERYGSALS--MATGKRIVALNKGERVPQVAAASIVAKVVRDRLI------DLLKREVGDF 173
Query: 193 GSGYPGDHKHIIFG----FPS-LVRFSW 215
GSGYP D + + F PS +R SW
Sbjct: 174 GSGYPSDPRTVEFVKRGLVPSECIRHSW 201
>gi|444912781|ref|ZP_21232941.1| Ribonuclease HII [Cystobacter fuscus DSM 2262]
gi|444716705|gb|ELW57548.1| Ribonuclease HII [Cystobacter fuscus DSM 2262]
Length = 272
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 85/163 (52%), Gaps = 26/163 (15%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEE-KREELFEDLKVNDS 74
+ G+DEAGRGP+ GP+V P ++ L L+ DSK + +E +R+E+ E +K +
Sbjct: 70 VAGVDEAGRGPLAGPVVAAAAILPRGWK--LEGLD--DSKKIADESRRDEMAEAIK-QGA 124
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
V WAV +P E+ +++N I S + + + +GI + V LD E
Sbjct: 125 VAWAVGQAEPEEI-------DRLN---IRRASLLAMHRALQGLGIQPSFVLLDAFTIPE- 173
Query: 135 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLR 177
L QR ++ K D+L ++ AS++AK TRDRT+R
Sbjct: 174 --CTLPQR-----GII--KGDALSLSIAAASVLAKTTRDRTMR 207
>gi|320527486|ref|ZP_08028667.1| ribonuclease HII [Solobacterium moorei F0204]
gi|320132199|gb|EFW24748.1| ribonuclease HII [Solobacterium moorei F0204]
Length = 208
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 57/221 (25%), Positives = 99/221 (44%), Gaps = 42/221 (19%)
Query: 10 WASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL 69
W I+GIDEAGRGP+ GP+ + P Y+ + DSK++ E+KR+ LFE +
Sbjct: 16 WPLEKLIIGIDEAGRGPLAGPLTVAGVVFPIGYENP----DIYDSKSISEKKRDALFEQI 71
Query: 70 KVNDSVGWAVDIIDPRELSA-KMLNKNKINLNEIS-HDSAIGLITRVLNIGILLTEVYLD 127
+ D++ + + + P ++ + +++ + +I+ H A ++T + + I E+
Sbjct: 72 Q-EDALWFEIIQVSPEDIDKYNIYRADQLAMEQIAIHSDAEIVLTDAMPLIIEGKEIIPL 130
Query: 128 TVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAEN 187
GD Q +S ++ ASI+AKVTRDR + E E
Sbjct: 131 VKGD----QKSIS--------------------IAAASILAKVTRDRVM----LEYDKEY 162
Query: 188 MHRNFG--SGYPGDHKHI----IFGFPSLVRFSWGTCTSHF 222
F GYP +H+ +G + R S+G +
Sbjct: 163 PEYGFAKHKGYPTK-QHMEALHTYGVTKIHRKSFGPVREEY 202
>gi|363899264|ref|ZP_09325774.1| ribonuclease HII [Oribacterium sp. ACB1]
gi|395209269|ref|ZP_10398363.1| ribonuclease HII [Oribacterium sp. ACB8]
gi|361959101|gb|EHL12397.1| ribonuclease HII [Oribacterium sp. ACB1]
gi|394704900|gb|EJF12429.1| ribonuclease HII [Oribacterium sp. ACB8]
Length = 214
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 58/222 (26%), Positives = 103/222 (46%), Gaps = 44/222 (19%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I G+DEAGRGP+ GP+V C P Y LN DSK + E++RE LFE L+ +++
Sbjct: 29 IAGVDEAGRGPLAGPVVAACAVIPLDY--PFYYLN--DSKKMSEKRREALFEVLQ-KEAI 83
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRV-----LNIGILLTEVYLDTVG 130
+ + I+ P + ++IN+ + ++++ + + L+ ILL + T+
Sbjct: 84 AFGIGIVSPERI-------DEINILQATYEAMREALKDMEKRFSLSPKILLNDAV--TIP 134
Query: 131 DAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW--IFEETAENM 188
Q K +V A SL ++ AS++AKVTRD + + + +
Sbjct: 135 GIPITQ----------KAIVHGDAKSL--SIAAASVLAKVTRDHIMLEYDEQYPKYGFKQ 182
Query: 189 HRNFGSGYPGDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLW 230
H+ +G+ H+ I + G C H + ++ L+
Sbjct: 183 HKGYGTKV---HREAI--------LTHGPCPIHRRSFLKNLY 213
>gi|332295819|ref|YP_004437742.1| ribonuclease H [Thermodesulfobium narugense DSM 14796]
gi|332178922|gb|AEE14611.1| Ribonuclease H [Thermodesulfobium narugense DSM 14796]
Length = 210
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 90/187 (48%), Gaps = 36/187 (19%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS-- 74
+G+DE GRG + GP+V G +Y + + DSK LK+++R EL + +K S
Sbjct: 23 LGMDEVGRGALAGPLVVGAVY----FDKDYMIDGLKDSKLLKDQERRELCDIIKRKASYW 78
Query: 75 -VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITR--VLNIGILLTEVYLDTVGD 131
+GWA +K+N+ SA+ L + +LN+ L ++ D
Sbjct: 79 SIGWAYH-----------WEIDKLNIY-----SALVLACKRAILNMNFLPEAIFFDG--- 119
Query: 132 AEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW--IFEETAENMH 189
KL + FP K +V KAD L P V+ ASI+AKV RD + + + ++H
Sbjct: 120 ----SLKL-KTFP-FKHIVFPKADRLVPSVAAASIIAKVARDDYMINISKYYPDYLFDIH 173
Query: 190 RNFGSGY 196
+ +G+ +
Sbjct: 174 KGYGTKF 180
>gi|15604075|ref|NP_220590.1| ribonuclease HII [Rickettsia prowazekii str. Madrid E]
gi|383487047|ref|YP_005404727.1| ribonuclease HII [Rickettsia prowazekii str. GvV257]
gi|383487623|ref|YP_005405302.1| ribonuclease HII [Rickettsia prowazekii str. Chernikova]
gi|383488470|ref|YP_005406148.1| ribonuclease HII [Rickettsia prowazekii str. Katsinyian]
gi|383489312|ref|YP_005406989.1| ribonuclease HII [Rickettsia prowazekii str. Dachau]
gi|383499448|ref|YP_005412809.1| ribonuclease HII [Rickettsia prowazekii str. BuV67-CWPP]
gi|383500287|ref|YP_005413647.1| ribonuclease HII [Rickettsia prowazekii str. RpGvF24]
gi|386082034|ref|YP_005998611.1| Ribonuclease HII [Rickettsia prowazekii str. Rp22]
gi|7227932|sp|Q9ZDW3.1|RNH2_RICPR RecName: Full=Ribonuclease HII; Short=RNase HII
gi|3860766|emb|CAA14667.1| RIBONUCLEASE HII (rnhB) [Rickettsia prowazekii str. Madrid E]
gi|292571798|gb|ADE29713.1| Ribonuclease HII [Rickettsia prowazekii str. Rp22]
gi|380757412|gb|AFE52649.1| ribonuclease HII [Rickettsia prowazekii str. GvV257]
gi|380757984|gb|AFE53220.1| ribonuclease HII [Rickettsia prowazekii str. RpGvF24]
gi|380760502|gb|AFE49024.1| ribonuclease HII [Rickettsia prowazekii str. Chernikova]
gi|380761349|gb|AFE49870.1| ribonuclease HII [Rickettsia prowazekii str. Katsinyian]
gi|380762194|gb|AFE50714.1| ribonuclease HII [Rickettsia prowazekii str. BuV67-CWPP]
gi|380763035|gb|AFE51554.1| ribonuclease HII [Rickettsia prowazekii str. Dachau]
Length = 193
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 96/211 (45%), Gaps = 36/211 (17%)
Query: 13 NPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVN 72
N + G+DEAGRG ++GP+V + + DSK L + KRE L+E ++
Sbjct: 14 NYIVAGVDEAGRGSLVGPVVASAVII----DKADIIPGIKDSKKLSKNKREILYE--RIT 67
Query: 73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDS-AIGLITRVLNIGILLTEVYLDTVGD 131
+ W+ II E+ + IN+ E + + AI V N+ + ++ +D
Sbjct: 68 SNYVWSTAIIAHTEI-------DNINILEATKKACAIA----VANLSLKPQKILVDG--- 113
Query: 132 AEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRN 191
+ +F I+F+ D+L ++ ASI+AKVTRDR + E H+N
Sbjct: 114 --------NMKFSDIRFISIINGDNLSLSIAAASIIAKVTRDRLMLELSAEFPQYLWHKN 165
Query: 192 FGSGYPGDHKHI----IFGFPSLVRFSWGTC 218
+G G +HI G S R S+ +C
Sbjct: 166 YGY---GTREHIEAIKTHGLSSYHRRSFKSC 193
>gi|385804569|ref|YP_005840969.1| ribonuclease H, type 2 [Haloquadratum walsbyi C23]
gi|339730061|emb|CCC41372.1| ribonuclease H, type 2 [Haloquadratum walsbyi C23]
Length = 231
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 64/236 (27%), Positives = 99/236 (41%), Gaps = 34/236 (14%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVG 76
+G DEAG+GPVLGPM+ ++ ++ + DSK L R+ L E L+ + ++
Sbjct: 5 IGSDEAGKGPVLGPMICAAVHA----SPSVIPDDIDDSKRLNASTRKRLRETLESHTAID 60
Query: 77 WAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRV--LNIGILLTEVYLDTVGDAEK 134
+I ++ + N + LN H +AI + V N I+ + A +
Sbjct: 61 IGTAVIPVTQIDGPRTDMNTLTLN--GHIAAIADLDGVAAFNGTIVADASDVSESRFATR 118
Query: 135 YQAKLSQRFPSIKFVV--------SKKADSLYPVVSGASIVAKVTRDRTLRGWIFE-ETA 185
++ L I + AD P+V+ AS++AK RD + E ET
Sbjct: 119 LESGLIDECNGIDTIALNHCSIEARHGADEDDPLVAAASVIAKARRDEQITALAKEYETI 178
Query: 186 ENMHRNFGSGYPGDHKHIIF---------GFPSLVRFSWGTCTSHFKDIVEVLWES 232
+ GSGYP D K F P+ R SW T DIVE + +S
Sbjct: 179 GPI----GSGYPSDQKTRAFLRRYIRTNGKVPACARRSWAT----VDDIVESIEQS 226
>gi|317152482|ref|YP_004120530.1| Ribonuclease H [Desulfovibrio aespoeensis Aspo-2]
gi|316942733|gb|ADU61784.1| Ribonuclease H [Desulfovibrio aespoeensis Aspo-2]
Length = 207
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 85/181 (46%), Gaps = 20/181 (11%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
I G+DEAGRG + GP+V G P +Y L LN DSK L KRE L+ ++ + +
Sbjct: 10 AIAGVDEAGRGCLAGPVVAGACILPQTYD--LPGLN--DSKQLSAAKRETLYPLIR-SQA 64
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
V WAV + P E+ +++N+ + + A+G R L + + + + A
Sbjct: 65 VAWAVGLSWPGEI-------DRVNILQATF-LAMGRAVRALKLSPRFLRIDGNKIIPAHA 116
Query: 135 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGS 194
+SQ ++V+ D P +S AS++AK RDR + + R+ G
Sbjct: 117 LGLGVSQ-----EWVIG--GDGSVPAISAASVLAKTFRDRLMVKLAARYPGYGLERHMGY 169
Query: 195 G 195
G
Sbjct: 170 G 170
>gi|206890782|ref|YP_002248663.1| ribonuclease HII [Thermodesulfovibrio yellowstonii DSM 11347]
gi|206742720|gb|ACI21777.1| ribonuclease HII [Thermodesulfovibrio yellowstonii DSM 11347]
Length = 201
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 91/188 (48%), Gaps = 42/188 (22%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDEAGRG + GP+V C+ S++ ++ DSK L E+RE LF+++ + V
Sbjct: 18 IAGIDEAGRGCLAGPVVAACV----SFRDSVFIEGIKDSKELSHEQRESLFQEIIKHAFV 73
Query: 76 GWA---VDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
G VD+ID ++N+ E + + ++ N+G + + +D V
Sbjct: 74 GIGIVDVDLID------------RVNILEATR---LAMMEAFENLGREIELLLIDAV--- 115
Query: 133 EKYQAKLSQRFPSIKFVVSKKA----DSLYPVVSGASIVAKVTRDRTLRGW--IFEETAE 186
P++K V +KA D ++ ASIVAKVTRDR +R + +
Sbjct: 116 ---------ELPALK--VDQKALIKGDRKSASIASASIVAKVTRDRIMRQYHEAYPMYGF 164
Query: 187 NMHRNFGS 194
+ H+ +G+
Sbjct: 165 DKHKGYGT 172
>gi|449102609|ref|ZP_21739357.1| ribonuclease HII [Treponema denticola AL-2]
gi|448966198|gb|EMB46856.1| ribonuclease HII [Treponema denticola AL-2]
Length = 198
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 94/197 (47%), Gaps = 30/197 (15%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+ GIDEAGRGP+ GP+ + P S+ ++ DSK L E+KREE+ + + + +V
Sbjct: 2 LCGIDEAGRGPLAGPVTAPAVILPSSFDFSI----LKDSKKLTEKKREEVRKTIYADPNV 57
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYL--DTVGDAE 133
W++ E+ + + E +++ GL ++ L + ++ D + D
Sbjct: 58 LWSIGWASNYEIDEINILQATFLAMERAYE---GLYLKLREFCKLNNDKFIEPDIIVDG- 113
Query: 134 KYQAKLSQRFPSIKFVVSKKA-----DSLYPVVSGASIVAKVTRDRTL--RGWIFEETAE 186
P+IK S KA DS+Y V++ ASI+AK RDR + WI+ E
Sbjct: 114 -------NFIPNIKNCSSIKALVKADDSVYEVMA-ASILAKTARDRMMIRYSWIYPEYGY 165
Query: 187 NMHRNFGSGYPGDHKHI 203
H+ +G+ KHI
Sbjct: 166 EKHKGYGT-----KKHI 177
>gi|238897797|ref|YP_002923476.1| RNAse HII [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
pisum)]
gi|259494067|sp|C4K435.1|RNH2_HAMD5 RecName: Full=Ribonuclease HII; Short=RNase HII
gi|229465554|gb|ACQ67328.1| RNAse HII [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
pisum)]
Length = 200
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 87/183 (47%), Gaps = 27/183 (14%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I G+DE GRGP+ GP+V + + ADSKTL ++KR L+E++ + ++
Sbjct: 13 IAGVDEVGRGPLAGPVVTAAVIL----DPKNPIIGLADSKTLSKKKRMALYEEI-THKAL 67
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
W++ + +E+ ++IN I H + + + V +GI V +D
Sbjct: 68 AWSLGRAESKEI-------DEIN---IFHATLLAMQRAVNALGIKTDHVLIDG-----HI 112
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW--IFEETAENMHRNFG 193
LS PS V K DS P +S ASI+AKVTRDR + +F H+ +
Sbjct: 113 CPILS--IPSSSIV---KGDSKVPEISAASILAKVTRDREMEALDKVFPGYGFAQHKGYP 167
Query: 194 SGY 196
+ +
Sbjct: 168 TAF 170
>gi|46446292|ref|YP_007657.1| ribonuclease HII [Candidatus Protochlamydia amoebophila UWE25]
gi|81627372|sp|Q6MDG7.1|RNH2_PARUW RecName: Full=Ribonuclease HII; Short=RNase HII
gi|46399933|emb|CAF23382.1| putative ribonuclease HII [Candidatus Protochlamydia amoebophila
UWE25]
Length = 222
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 60/225 (26%), Positives = 96/225 (42%), Gaps = 37/225 (16%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDEAGRGP+ GP+V C + L DSK L + RE LFE L + +V
Sbjct: 31 IAGIDEAGRGPLAGPVVAAA----CILPKGLLVPQINDSKKLSPKVRERLFERLTTDSAV 86
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
+ + II E+ +++N I + + ++ + + + V +D +
Sbjct: 87 RYGIGIIGQAEI-------DRVN---IYQATILAMLMAIQQLPVTPDYVLVDGMNLPHP- 135
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF-GS 194
P +K + K D L ++ ASI+AK TRDR + + HR + G
Sbjct: 136 ------DLPCLKII---KGDQLSQSIAAASIIAKETRDRLMCQY---------HREWPGY 177
Query: 195 GYPGDHKHIIFGFPSLVRFSWGTCTSHFK--DIVEVLWESDEMDE 237
G+ HK F G C H + D ++ + E + D+
Sbjct: 178 GF-NQHKGYATELHLEALFKQGPCPIHRRSFDPIKSMLEVEIADD 221
>gi|268590518|ref|ZP_06124739.1| ribonuclease HII [Providencia rettgeri DSM 1131]
gi|291314104|gb|EFE54557.1| ribonuclease HII [Providencia rettgeri DSM 1131]
Length = 197
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 83/185 (44%), Gaps = 31/185 (16%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I G+DE GRGP++G +V + + ADSK L E+KRE+LF++++ ++
Sbjct: 11 IAGVDEVGRGPLVGAVVTAAVIL----DPNNPIIGLADSKKLTEKKREKLFDEIQ-EKAL 65
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
W + +P E+ N+N I H + + + V + I+ V +D
Sbjct: 66 CWCIGRAEPEEID---------NIN-ILHATMLAMQRAVAGLSIIPEYVLID-------- 107
Query: 136 QAKLSQRFPSIKFVVSK--KADSLYPVVSGASIVAKVTRDRTLRGW--IFEETAENMHRN 191
R P + K DSL +S ASI+AKV RDR + F E H+
Sbjct: 108 ----GNRCPELPMPSQAVIKGDSLVQEISAASILAKVIRDREMVELDKAFPEYGFAKHKG 163
Query: 192 FGSGY 196
+ + Y
Sbjct: 164 YPTAY 168
>gi|332522627|ref|ZP_08398879.1| ribonuclease HII [Streptococcus porcinus str. Jelinkova 176]
gi|332313891|gb|EGJ26876.1| ribonuclease HII [Streptococcus porcinus str. Jelinkova 176]
Length = 258
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 87/180 (48%), Gaps = 23/180 (12%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDE GRGP+ GP+V C+ P + + + LN DSK + + K LFE +K N +V
Sbjct: 73 IAGIDEVGRGPLAGPVVAACVILPKNCK--IKGLN--DSKKIPKSKHNILFEQIK-NQAV 127
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
G + I+D + + + +N+ + + + + I + + ++ + +D +
Sbjct: 128 GIGIGIVDNKMIDS-------VNIYQATKLAMLEAINDLKKVEVIPDYLLIDAM------ 174
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 195
L P + + K D+ ++ ASIVAKVTRD+ + + + +N G G
Sbjct: 175 --TLDISIPQMSLI---KGDANSLSIAAASIVAKVTRDQLMMSYDQNYPGYDFAQNAGYG 229
>gi|307129834|ref|YP_003881850.1| ribonuclease HII [Dickeya dadantii 3937]
gi|306527363|gb|ADM97293.1| ribonuclease HII [Dickeya dadantii 3937]
Length = 198
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 87/186 (46%), Gaps = 31/186 (16%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
CI G+DE GRGP++G +V + + +A L ADSKTL E++R L+++++ +
Sbjct: 12 CIAGVDEVGRGPLVGAVVTAAVI--LDPNRPIAGL--ADSKTLSEKRRLALYDEIR-EKA 66
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
+ W++ +P E+ +LN I H + + + V + I V +D
Sbjct: 67 LAWSLGRAEPEEID---------SLN-ILHATMLAMQRAVAGLPITPDFVLID------- 109
Query: 135 YQAKLSQRFPSIKFVVSK--KADSLYPVVSGASIVAKVTRDRTLR--GWIFEETAENMHR 190
R PS+ K DS +S ASI+AKVTRDR + F E H+
Sbjct: 110 -----GNRCPSLPMPSQAVVKGDSRVAEISAASILAKVTRDREMEVLDQQFPEYGFAQHK 164
Query: 191 NFGSGY 196
+ + Y
Sbjct: 165 GYPTAY 170
>gi|87199856|ref|YP_497113.1| ribonuclease HII [Novosphingobium aromaticivorans DSM 12444]
gi|97189114|sp|Q2G794.1|RNH2_NOVAD RecName: Full=Ribonuclease HII; Short=RNase HII
gi|87135537|gb|ABD26279.1| RNase HII [Novosphingobium aromaticivorans DSM 12444]
Length = 196
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 82/181 (45%), Gaps = 16/181 (8%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVG 76
+G+DEAGRGP+ GP+V + C + + DSK L +R EL E K+
Sbjct: 4 IGVDEAGRGPLAGPVVAAAVVL-CKPRPS----GLDDSKKLSAARRAELEE--KIKRRCR 56
Query: 77 WAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQ 136
WAV +++P E+ N ++ A+G + L + EV +D G+ +
Sbjct: 57 WAVGVVEPDEID----RLNIFGATMLAMTLAVGALCEQLAHDEDVGEVLVD--GNLTPHG 110
Query: 137 AKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGY 196
+ +P+ V D+L P +S ASI+AK RDR +R RN G G
Sbjct: 111 RRPEWCWPARPIV---GGDALEPCISAASIIAKEHRDRLMREAALAHPHYGWERNAGYGT 167
Query: 197 P 197
P
Sbjct: 168 P 168
>gi|449126289|ref|ZP_21762582.1| ribonuclease HII [Treponema denticola OTK]
gi|448938481|gb|EMB19412.1| ribonuclease HII [Treponema denticola OTK]
Length = 198
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 93/197 (47%), Gaps = 30/197 (15%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+ GIDEAGRGP+ GP+ + P + ++ DSK L E+KREE+ + + + +V
Sbjct: 2 LCGIDEAGRGPLAGPVTAAAVILPSRFDFSI----LKDSKKLTEKKREEVRKTIYADPNV 57
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYL--DTVGDAE 133
W++ E+ + + E +++ GL ++ L + ++ D + D
Sbjct: 58 LWSIGWASNYEIDEINILQATFLAMERAYE---GLYLKLQEFCKLNNDKFIEPDIIVDG- 113
Query: 134 KYQAKLSQRFPSIKFVVSKKA-----DSLYPVVSGASIVAKVTRDRTL--RGWIFEETAE 186
P+IK S KA DS+Y V++ ASI+AK RDR + WI+ E
Sbjct: 114 -------NSIPNIKNCSSIKALVKADDSVYEVMA-ASILAKTARDRMMIRYSWIYPEYGY 165
Query: 187 NMHRNFGSGYPGDHKHI 203
H+ +G+ KHI
Sbjct: 166 EKHKGYGT-----KKHI 177
>gi|448304708|ref|ZP_21494644.1| ribonuclease HII [Natronorubrum sulfidifaciens JCM 14089]
gi|445590089|gb|ELY44310.1| ribonuclease HII [Natronorubrum sulfidifaciens JCM 14089]
Length = 219
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 93/219 (42%), Gaps = 34/219 (15%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVG 76
G+DEAG+GP LG M ++ +T+ ADSK L +REEL ++ D +
Sbjct: 3 FGVDEAGKGPALGSMFAAAVFL---EDRTVLPDGIADSKRLTPARREELATLIREADEIA 59
Query: 77 WAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEV-----YLDTVGD 131
V E++ ++ + ++N ++ + I VL+ G+ V DT D
Sbjct: 60 VGV-----AEITTTRIDDPETDMNSLAVTAHAEAIDEVLS-GVRDDSVSGLCDACDT--D 111
Query: 132 AEKYQAKLSQRFPS---IKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENM 188
A+++ +++ + ++ AD +V ASI+AKV RD + E
Sbjct: 112 ADRFARRVADACSTPNDLEIDARHGADDDSTLVGAASIIAKVERDAHVAALADE------ 165
Query: 189 HRNFGSGYPGDHKHIIF---------GFPSLVRFSWGTC 218
+ GSGYP D F P R SW TC
Sbjct: 166 YGPVGSGYPSDPTTQTFLESYVDEHGDLPPCARASWSTC 204
>gi|226325139|ref|ZP_03800657.1| hypothetical protein COPCOM_02931 [Coprococcus comes ATCC 27758]
gi|225206487|gb|EEG88841.1| ribonuclease HII [Coprococcus comes ATCC 27758]
Length = 253
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 87/178 (48%), Gaps = 39/178 (21%)
Query: 9 KWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFED 68
K+A + I GIDE GRGP+ GP+V G + P + L DSK L KR+EL+++
Sbjct: 66 KYADHAFICGIDEVGRGPLAGPVVAGAVILP----KECEILYINDSKKLSAAKRDELYDE 121
Query: 69 LKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDS---AIGLIT----RVLNIGILL 121
+ ++ +V + + P + ++IN+ + ++++ AIG + +LN + +
Sbjct: 122 I-MDKAVAVGLGMASPARI-------DEINILQATYEAMRQAIGNLKVEPDLLLNDAVTI 173
Query: 122 TEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW 179
EV + P + + K D+ ++ ASIVAKVTRDR + +
Sbjct: 174 PEVVI-----------------PQVPII---KGDAKSVSIAAASIVAKVTRDRLMEEY 211
>gi|379713327|ref|YP_005301665.1| ribonuclease HII [Rickettsia massiliae str. AZT80]
gi|376333973|gb|AFB31205.1| ribonuclease HII [Rickettsia massiliae str. AZT80]
Length = 193
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 66/211 (31%), Positives = 95/211 (45%), Gaps = 36/211 (17%)
Query: 13 NPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVN 72
N + GIDEAGRGP+ GP+V + + T DSK L ++ RE L+E + N
Sbjct: 14 NCIVAGIDEAGRGPLAGPVVASAVIIDNANIIT----GIKDSKKLSKKTRELLYEQITSN 69
Query: 73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDS-AIGLITRVLNIGILLTEVYLDTVGD 131
WA II E+ + IN+ E + + +I + L I+L + G+
Sbjct: 70 --YVWATAIISHTEI-------DDINILEATKKACSIAVANLSLEPEIVLVD------GN 114
Query: 132 AEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRN 191
+F +FV D+L ++ ASIVAKVTRDR + E H+N
Sbjct: 115 ---------MQFKDERFVSIINGDNLSLSIAAASIVAKVTRDRLMLDLSAELPQYLWHKN 165
Query: 192 FGSGYPGDHKHI----IFGFPSLVRFSWGTC 218
SGY G +HI I+G R S+ C
Sbjct: 166 --SGY-GTKEHIEAINIYGLSPYHRRSFRCC 193
>gi|345859698|ref|ZP_08812032.1| ribonuclease HII [Desulfosporosinus sp. OT]
gi|344327155|gb|EGW38599.1| ribonuclease HII [Desulfosporosinus sp. OT]
Length = 271
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/216 (25%), Positives = 98/216 (45%), Gaps = 40/216 (18%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+ GIDEAGRGP+ GP+V P + L+ LN DSK L E KRE+L+ ++ ++
Sbjct: 75 LAGIDEAGRGPLAGPVVAAACILPAQFD--LSGLN--DSKMLTESKREKLYTQIQAQ-AI 129
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAI-GLITRVLNIGILLTEVYLDTVGDAEK 134
+A+ +P E+ A N + +++ A+ GL R +L+ + L +
Sbjct: 130 DYAIGSAEPAEIDA----LNILQATKLAMKRAVEGLTVRPHY--LLIDALRLPGI----- 178
Query: 135 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW--IFEETAENMHRNF 192
P + V + D + ++ ASI+AKVTRDR + ++ E + ++ +
Sbjct: 179 -------HIPQLPLV---RGDQISATIAAASILAKVTRDRLMVELHALYPEYTFSKNKGY 228
Query: 193 GSGYPGDHKHIIFGFPSLVRFSWGTCTSHFKDIVEV 228
G+ +H ++ G C H + V
Sbjct: 229 GT---SEHMQVLRRL--------GPCPLHRRSFAPV 253
>gi|407718253|ref|YP_006795658.1| ribonuclease HII [Leuconostoc carnosum JB16]
gi|407242009|gb|AFT81659.1| ribonuclease HII [Leuconostoc carnosum JB16]
Length = 256
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 81/180 (45%), Gaps = 26/180 (14%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDE GRGP+ GP++ + P +Q DSK L +KR L+ D+ ++ ++
Sbjct: 73 IAGIDEVGRGPLAGPVIAAAVILPHDFQ----AYEVIDSKQLSAKKRHSLY-DIIISQAI 127
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
+ ++D + + +KIN+ E + + L + L E V +
Sbjct: 128 SIGIGVVDAKTI-------DKINIYEAARQAM------TLAVEELAPEPEYLLV---DAM 171
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 195
Q KL P + K D++ + ASI+AKVTRDR + + + RN G G
Sbjct: 172 QLKLD--LPQTSLI---KGDAISNSIGAASIIAKVTRDRLMAEYDVQYPGYGFSRNAGYG 226
>gi|261344722|ref|ZP_05972366.1| ribonuclease HII [Providencia rustigianii DSM 4541]
gi|282567164|gb|EFB72699.1| ribonuclease HII [Providencia rustigianii DSM 4541]
Length = 196
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 88/184 (47%), Gaps = 29/184 (15%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYC-PCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
I G+DE GRGP++G +V + P + + LA DSK L E+KRE+LF+++K +
Sbjct: 11 IAGVDEVGRGPLVGAVVTAAVILDPNNPIEGLA-----DSKKLTEKKREKLFDEIK-EKA 64
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
+ W + +P N+I+ I H + + + V + I V +D
Sbjct: 65 LCWCIGRAEP----------NEIDELNILHATMLAMQRAVAGLSITPEFVLVDG-----N 109
Query: 135 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW--IFEETAENMHRNF 192
KLS PS V K DSL +S ASI+AKV RDR + +F E H+ +
Sbjct: 110 RCPKLS--MPSQAVV---KGDSLVQEISAASILAKVVRDREMVELDKVFPEYGFAKHKGY 164
Query: 193 GSGY 196
+ Y
Sbjct: 165 PTAY 168
>gi|227114701|ref|ZP_03828357.1| ribonuclease HII [Pectobacterium carotovorum subsp. brasiliensis
PBR1692]
gi|403057427|ref|YP_006645644.1| ribonuclease HII [Pectobacterium carotovorum subsp. carotovorum
PCC21]
gi|402804753|gb|AFR02391.1| ribonuclease HII [Pectobacterium carotovorum subsp. carotovorum
PCC21]
Length = 198
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 79/164 (48%), Gaps = 29/164 (17%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
CI G+DE GRGP++G +V + T + ADSK L E++R L++++K +
Sbjct: 12 CIAGVDEVGRGPLVGAVVTAAVIL----DPTRPIVGLADSKKLSEKRRLSLYDEIK-EKA 66
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
+ W++ +P E+ +++N I H + + + V + ++ V +D
Sbjct: 67 LAWSLGRAEPEEI-------DQLN---ILHATMLAMQRAVAGLAVVPDFVLID------- 109
Query: 135 YQAKLSQRFPSIKFVVSK--KADSLYPVVSGASIVAKVTRDRTL 176
R P++ K DS +S ASI+AKVTRDR +
Sbjct: 110 -----GNRCPALPMPAQAVVKGDSRVAEISAASIMAKVTRDREM 148
>gi|50119985|ref|YP_049152.1| ribonuclease HII [Pectobacterium atrosepticum SCRI1043]
gi|73917607|sp|Q6D8C9.1|RNH2_ERWCT RecName: Full=Ribonuclease HII; Short=RNase HII
gi|49610511|emb|CAG73956.1| ribonuclease HII [Pectobacterium atrosepticum SCRI1043]
Length = 198
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 79/164 (48%), Gaps = 29/164 (17%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
CI G+DE GRGP++G +V + T + ADSK L E++R L++++K +
Sbjct: 12 CIAGVDEVGRGPLVGAVVTAAVIL----DPTRPIVGLADSKQLSEKRRLSLYDEIK-EKA 66
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
+ W++ +P E+ +++N I H + + + V + I+ V +D
Sbjct: 67 LAWSLGRAEPEEI-------DQLN---ILHATMLAMQRAVAALAIVPDFVLID------- 109
Query: 135 YQAKLSQRFPSIKFVVSK--KADSLYPVVSGASIVAKVTRDRTL 176
R P++ K DS +S ASI+AKVTRDR +
Sbjct: 110 -----GNRCPALPMPAQAVVKGDSRVAEISAASIMAKVTRDREM 148
>gi|244539013|dbj|BAH83056.1| ribonuclease HII [Candidatus Ishikawaella capsulata Mpkobe]
Length = 206
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 88/187 (47%), Gaps = 31/187 (16%)
Query: 13 NPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVN 72
N I G+DEAGRGP+ G ++ + S+ DSK L E+KR LFE++ +
Sbjct: 18 NVLIAGVDEAGRGPLAGSVISAAVILNVSHPIN----GLKDSKKLSEKKRLLLFENI-IK 72
Query: 73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
+++ W + +P E+ A N + IS AI + IL V++D
Sbjct: 73 NAISWNIGRAEPAEIDA----VNILQATMISMQRAIE------GLSILPDYVFIDG---- 118
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW--IFEETAENMHR 190
K+ K++ PS FV K D+ +S ASI+AKV RDR + +F + H+
Sbjct: 119 -KHPPKIN--IPSRCFV---KGDNFIAEISAASILAKVIRDREMIDLDILFPQYGFAQHK 172
Query: 191 NFGSGYP 197
GYP
Sbjct: 173 ----GYP 175
>gi|225849921|ref|YP_002730155.1| ribonuclease HII [Persephonella marina EX-H1]
gi|225645751|gb|ACO03937.1| ribonuclease HII [Persephonella marina EX-H1]
Length = 198
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 78/161 (48%), Gaps = 27/161 (16%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDEAGRGPV GP+V + P Q + F DSK L +++REELF +K ++
Sbjct: 16 IAGIDEAGRGPVAGPVVAASVIFP----QNIEPFIFKDSKKLTKKQREELFTQIK-ERAL 70
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
+ I+D ++ + N N +++ AI + N L+T D K+
Sbjct: 71 AVGIGIVD----NSVIDRINIYNATKLAMKRAIEDMNH--NFDYLIT--------DYVKF 116
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTL 176
+P I KKAD V+ ASI+AKV RDR +
Sbjct: 117 DP-----YPHISL---KKADEKSLSVAAASIIAKVFRDRIM 149
>gi|187778966|ref|ZP_02995439.1| hypothetical protein CLOSPO_02561 [Clostridium sporogenes ATCC
15579]
gi|187772591|gb|EDU36393.1| ribonuclease HII [Clostridium sporogenes ATCC 15579]
Length = 269
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 102/215 (47%), Gaps = 32/215 (14%)
Query: 9 KWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFED 68
++ ++ I G+DE GRGP+ GP+V + + ++ LN DSK L E+KREEL D
Sbjct: 78 RYGNSYLIAGVDEVGRGPLAGPIVAAAVVLDLNVEEMHRILNIKDSKKLSEKKREEL--D 135
Query: 69 LKVND-SVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITR---VLNIGILLTEV 124
+ + + ++ + + ++D R + + + + NE+ + GL + VL+ G + +
Sbjct: 136 IIIREKAISYNIALVDNRTIDERGIAWSN---NEVLKRAVEGLNVKPDLVLSDGYAVKNL 192
Query: 125 YLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEET 184
+ +F++ K DS ++ ASI+AKV RD ++ + E +
Sbjct: 193 NIRN------------------EFII--KGDSKSVSIASASIIAKVYRDNMMKEYSKELS 232
Query: 185 AENMHRNFGSGYPGDHKHII--FGFPSLVRFSWGT 217
+ N G G +H I +G + R S+ T
Sbjct: 233 MYGFNHNAGYG-TEEHIQAIKKYGTSKIHRMSFLT 266
>gi|300715410|ref|YP_003740213.1| ribonuclease HII [Erwinia billingiae Eb661]
gi|299061246|emb|CAX58355.1| Ribonuclease HII [Erwinia billingiae Eb661]
Length = 207
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 89/185 (48%), Gaps = 31/185 (16%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
CI G+DE GRGP++G +V + + ADSK L E++R L++++ V +
Sbjct: 11 CIAGVDEVGRGPLVGAVVTAAVI----LDPARPIVGLADSKKLSEKRRLALYDEI-VEKA 65
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
+ W++ +P E+ +++N I H + + + V + I V +D G+
Sbjct: 66 LSWSLGRAEPEEI-------DRLN---ILHATMLAMQRAVAGLHICPDFVLID--GNRCP 113
Query: 135 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW--IFEETAENMHRNF 192
A PS+ V K DSL +S ASI+AKVTRDR + +F + H+
Sbjct: 114 ALA-----MPSLAVV---KGDSLVREISAASIIAKVTRDREMSELDVLFPQYGFAQHK-- 163
Query: 193 GSGYP 197
GYP
Sbjct: 164 --GYP 166
>gi|303271053|ref|XP_003054888.1| ribonuclease HII [Micromonas pusilla CCMP1545]
gi|226462862|gb|EEH60140.1| ribonuclease HII [Micromonas pusilla CCMP1545]
Length = 256
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 78/165 (47%), Gaps = 31/165 (18%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+ G+DEAGRGP+ GP+V C + + L DSK + EE REE++E L N V
Sbjct: 62 VCGVDEAGRGPLAGPVVAAA----CVFPEDLVIDAINDSKQMTEEDREEVYEQLMENPEV 117
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEIS----HDSAIGLITRVLNIGILLTEVYLDTVGD 131
+V +ID +E+ + IN+ E + S GL T+ + + D
Sbjct: 118 LKSVCVIDHKEI-------DDINILEATMKAMRKSVEGLPTKADWVLV-----------D 159
Query: 132 AEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTL 176
+ L R +I K D+ ++ AS++AKVTRDR +
Sbjct: 160 GNRVPEPLKGRAEAI-----VKGDAKSVCIAAASVLAKVTRDRMM 199
>gi|97182194|sp|Q5PBG2.2|RNH2_ANAMM RecName: Full=Ribonuclease HII; Short=RNase HII
Length = 243
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 88/185 (47%), Gaps = 33/185 (17%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCP---CSYQQTLATLNFADSKTLKEEKREELFEDLKVN 72
I+G+DE G G + GP+V +Y P C Y + + DSK L +KREELF K+
Sbjct: 25 IVGVDEVGYGAIAGPVVAAAVYLPERECDYIK-----DIKDSKALSSKKREELF--CKIT 77
Query: 73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
+ V RE+ + N+ SH I + + N+G+ V +D
Sbjct: 78 AHAKYGVGFARVREI-------EQHNILVASH---ISMKRALQNLGVKADLVLVDG---- 123
Query: 133 EKYQAKLSQRFP-SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW--IFEETAENMH 189
++ P ++K +V K DS+ ++ ASI+AKVTRDR +R + E A N +
Sbjct: 124 ----SRAPAGLPWAVKTIV--KGDSISTSIAAASIIAKVTRDRFMRRLHEQYPEYAWNQN 177
Query: 190 RNFGS 194
+G+
Sbjct: 178 CGYGT 182
>gi|288905300|ref|YP_003430522.1| ribonuclease HII [Streptococcus gallolyticus UCN34]
gi|306831379|ref|ZP_07464538.1| ribonuclease HII [Streptococcus gallolyticus subsp. gallolyticus
TX20005]
gi|325978285|ref|YP_004288001.1| ribonuclease HII [Streptococcus gallolyticus subsp. gallolyticus
ATCC BAA-2069]
gi|386337745|ref|YP_006033914.1| ribonuclease HII [Streptococcus gallolyticus subsp. gallolyticus
ATCC 43143]
gi|288732026|emb|CBI13591.1| ribonuclease HII [Streptococcus gallolyticus UCN34]
gi|304426439|gb|EFM29552.1| ribonuclease HII [Streptococcus gallolyticus subsp. gallolyticus
TX20005]
gi|325178213|emb|CBZ48257.1| rnhB [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069]
gi|334280381|dbj|BAK27955.1| ribonuclease HII [Streptococcus gallolyticus subsp. gallolyticus
ATCC 43143]
Length = 259
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 88/182 (48%), Gaps = 25/182 (13%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
I GIDE GRGP+ GP+V C+ P + + DSK + + EE+++++ + +
Sbjct: 71 AIAGIDEVGRGPLAGPVVTACVILP----KNCKIKHLNDSKKIPKNHHEEIYQEI-LARA 125
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNI-GILLTEVYLDTVGDAE 133
+G + I+D N I+ I + +G++ + + G++ YL + DA
Sbjct: 126 LGIGIGIVD----------NNVIDQINIYEATKVGMLQAINQLKGVVTKPDYL--LIDAM 173
Query: 134 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG 193
+ + Q+ ++ A+SL ++ ASIVAKVTRDR + + + +N G
Sbjct: 174 HLETSIPQQ-----SLIKGDANSL--SIAAASIVAKVTRDRMMADYANDYPGYAFEKNVG 226
Query: 194 SG 195
G
Sbjct: 227 YG 228
>gi|417925866|ref|ZP_12569281.1| ribonuclease HII [Finegoldia magna SY403409CC001050417]
gi|341590791|gb|EGS34022.1| ribonuclease HII [Finegoldia magna SY403409CC001050417]
Length = 207
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 61/219 (27%), Positives = 102/219 (46%), Gaps = 32/219 (14%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDE GRGP+ GP+V + P + DSK L E+KR + F+D+ +N ++
Sbjct: 14 ICGIDEVGRGPLAGPVVTCAIIMP---KNCEIIEGVTDSKKLSEKKRIK-FKDMILNQAL 69
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
++V+ +D + ++IN+ + + S + + + L V DAE+
Sbjct: 70 AYSVNFVDQGVI-------DEINIKQATRLSMKRAVESLKTKDNKFIKPDL-IVIDAEEI 121
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLR--GWIFEETAENMHRNFG 193
+ Q + FV K LYP +S ASIVAKV RD ++ I+ + H+ +G
Sbjct: 122 DTDIKQ----MSFV--KGDQKLYP-ISCASIVAKVIRDEYMKEMAVIYPQYGFEKHKGYG 174
Query: 194 SGYPGDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWES 232
+ H+ +I +G C H K + L+E+
Sbjct: 175 TKL---HREMI--------LEYGECPLHRKTFLRKLYEN 202
>gi|389580850|ref|ZP_10170877.1| ribonuclease HII [Desulfobacter postgatei 2ac9]
gi|389402485|gb|EIM64707.1| ribonuclease HII [Desulfobacter postgatei 2ac9]
Length = 208
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 98/210 (46%), Gaps = 36/210 (17%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
I G+DEAGRGP+ GP+V + P ++ + +N DSK L E+KR LF ++ + +
Sbjct: 26 IIAGVDEAGRGPLAGPVVSAAVVLPENFD--IPGIN--DSKKLSEKKRAALFPVIQ-SQA 80
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
+ + + I D E+ ++IN I S + + V ++G++ + +D
Sbjct: 81 IAFGIGIADHGEI-------DRIN---ILQASLLSMKRAVDDLGLIPDYLLIDG---KFT 127
Query: 135 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGS 194
+ + QR P I K D+L ++ ASI+AKVTRDR + + R+
Sbjct: 128 IDSNIDQR-PVI------KGDTLSLSIAAASILAKVTRDRIMTDLDLQYPEYEFKRH--K 178
Query: 195 GYPGD-HKHIIFGFPSLVRFSWGTCTSHFK 223
GYP HK I + G C H K
Sbjct: 179 GYPTKAHKQAI--------LTHGPCPIHRK 200
>gi|223998909|ref|XP_002289127.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220974335|gb|EED92664.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 183
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 88/183 (48%), Gaps = 26/183 (14%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTL-KEEKREELFEDLKVNDS 74
++G+DEAGRGP+ GP+V P + + + DSK + KEE RE L+E+L +
Sbjct: 1 VVGVDEAGRGPLAGPVVAAAAIVPTNIEGVI------DSKKITKEEDRERLYEELVSSPG 54
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
+ +AV I+ + + ++IN+ + + + R+ G++ + Y + D K
Sbjct: 55 IRYAVAIVSAQRI-------DEINILQATLEG-----MRMAVQGVMDMDSYYFALIDGNK 102
Query: 135 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGS 194
+ SI K D + ASI+AKVTRDR + + + N+ ++
Sbjct: 103 IPKDMPCSSESI-----TKGDGREYSIGAASIIAKVTRDRLMHEYDAKYPEYNLKQH--K 155
Query: 195 GYP 197
GYP
Sbjct: 156 GYP 158
>gi|224541328|ref|ZP_03681867.1| hypothetical protein CATMIT_00488 [Catenibacterium mitsuokai DSM
15897]
gi|224525765|gb|EEF94870.1| ribonuclease HII [Catenibacterium mitsuokai DSM 15897]
Length = 211
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 81/164 (49%), Gaps = 29/164 (17%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I+G+DEAGRGP+ GP+V G + P + DSK L E+KRE L+ DL + +++
Sbjct: 21 ILGVDEAGRGPMAGPLVVGGVIFPEDFYDE----RINDSKKLTEKKREALY-DLIIENAL 75
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
+ ++++ E+ + +N+ E S + + I L L++ +GD
Sbjct: 76 AYQIEVLSVEEV-------DTLNVYEASR-TGMKRIVESLEPDFTLSDAM--PLGD---- 121
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW 179
P + + K D+ + ASI+AKVTRDR ++ +
Sbjct: 122 -------IPHLSII---KGDAKSISIGAASILAKVTRDRIMKEY 155
>gi|449122469|ref|ZP_21758802.1| ribonuclease HII [Treponema denticola MYR-T]
gi|448947459|gb|EMB28303.1| ribonuclease HII [Treponema denticola MYR-T]
Length = 198
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 94/197 (47%), Gaps = 30/197 (15%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+ GIDEAGRGP+ GP+ + P S+ ++ DSK L E+KREE+ + + + +V
Sbjct: 2 LCGIDEAGRGPLAGPVTAAAVILPSSFDFSI----LKDSKKLSEKKREEVRKTIYADPNV 57
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYL--DTVGDAE 133
W++ E+ + + E +++ GL ++ L + ++ D + D
Sbjct: 58 LWSIGWASNYEIDEINILQATFLAMERAYE---GLYLKLQEFCKLNNDKFMEPDIIVDG- 113
Query: 134 KYQAKLSQRFPSIKFVVSKKA-----DSLYPVVSGASIVAKVTRDRTL--RGWIFEETAE 186
P+IK S KA DS+Y V++ ASI+AK RD+ + W++ E
Sbjct: 114 -------NFIPNIKNCSSIKALVKADDSVYEVMA-ASILAKTARDKMMIRYSWLYPEYGY 165
Query: 187 NMHRNFGSGYPGDHKHI 203
H+ +G+ KHI
Sbjct: 166 EKHKGYGT-----KKHI 177
>gi|227893503|ref|ZP_04011308.1| ribonuclease HII [Lactobacillus ultunensis DSM 16047]
gi|227864673|gb|EEJ72094.1| ribonuclease HII [Lactobacillus ultunensis DSM 16047]
Length = 250
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 99/224 (44%), Gaps = 45/224 (20%)
Query: 10 WASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL 69
W N C+ G+DE GRGP+ GP+V + Q L+ DSK L E+R +L+ +
Sbjct: 62 WQKNQCVGGVDEVGRGPLAGPVVTAAVII----DQDFDLLDVNDSKKLSPERRLKLYPKI 117
Query: 70 KVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNI--GILLTEVYLD 127
+ ++V + + P + ++IN+ E A+ R LNI LL + +D
Sbjct: 118 -LEEAVSVGIGVKSPAVI-------DQINIYEADR-QAMAQAVRALNIKPDALLVDA-MD 167
Query: 128 TVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAEN 187
D P +K + K D+ ++ ASIVAKV RD+ + +
Sbjct: 168 VSVD-----------LPQVKLI---KGDAKSNSIAAASIVAKVFRDKLMDDY------AK 207
Query: 188 MHRNFG----SGYPGDHKHI----IFGFPSLVRFSWGTCTSHFK 223
++ +G +GY G +HI +G + R ++ + FK
Sbjct: 208 IYPQYGFPNNAGY-GTKEHIEALKKYGPTPIHRKTFAPVSDFFK 250
>gi|255004020|ref|ZP_05278821.1| ribonuclease HII (rnhB) [Anaplasma marginale str. Virginia]
Length = 239
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 88/185 (47%), Gaps = 33/185 (17%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCP---CSYQQTLATLNFADSKTLKEEKREELFEDLKVN 72
I+G+DE G G + GP+V +Y P C Y + + DSK L +KREELF K+
Sbjct: 21 IVGVDEVGYGAIAGPVVAAAVYLPERECDYIK-----DIKDSKALSSKKREELF--CKIT 73
Query: 73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
+ V RE+ + N+ SH I + + N+G+ V +D
Sbjct: 74 AHARYGVGFARVREI-------EQHNILVASH---ISMKRALQNLGVKADLVLVDG---- 119
Query: 133 EKYQAKLSQRFP-SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW--IFEETAENMH 189
++ P ++K +V K DS+ ++ ASI+AKVTRDR +R + E A N +
Sbjct: 120 ----SRAPAGLPWAVKTIV--KGDSISTSIAAASIIAKVTRDRFMRRLHEQYPEYAWNQN 173
Query: 190 RNFGS 194
+G+
Sbjct: 174 CGYGT 178
>gi|254994768|ref|ZP_05276958.1| ribonuclease HII (rnhB) [Anaplasma marginale str. Mississippi]
Length = 239
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 88/185 (47%), Gaps = 33/185 (17%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCP---CSYQQTLATLNFADSKTLKEEKREELFEDLKVN 72
I+G+DE G G + GP+V +Y P C Y + + DSK L +KREELF K+
Sbjct: 21 IVGVDEVGYGAIAGPVVAAAVYLPERECDYIK-----DIKDSKALSSKKREELF--CKIT 73
Query: 73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
+ V RE+ + N+ SH I + + N+G+ V +D
Sbjct: 74 AHARYGVGFARVREI-------EQHNILVASH---ISMKRALQNLGVKADLVLVDG---- 119
Query: 133 EKYQAKLSQRFP-SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW--IFEETAENMH 189
++ P ++K +V K DS+ ++ ASI+AKVTRDR +R + E A N +
Sbjct: 120 ----SRAPAGLPWAVKTIV--KGDSISTSIAAASIIAKVTRDRFMRRLHEQYPEYAWNQN 173
Query: 190 RNFGS 194
+G+
Sbjct: 174 CGYGT 178
>gi|297587481|ref|ZP_06946125.1| ribonuclease H [Finegoldia magna ATCC 53516]
gi|297574170|gb|EFH92890.1| ribonuclease H [Finegoldia magna ATCC 53516]
Length = 207
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 63/222 (28%), Positives = 104/222 (46%), Gaps = 38/222 (17%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I G+DE GRGP+ GP+V + P + DSK L E+KR + F+D+ ++ ++
Sbjct: 14 ICGVDEVGRGPLAGPVVTCAIIMP---KNCEIIDGVTDSKKLSEKKRIK-FKDMILDQAL 69
Query: 76 GWAVDIIDPRELSAKMLNKNKINL---NEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
++V+ +D + ++IN+ N +S A+ + N I + V DA
Sbjct: 70 AYSVNFVDQSVI-------DEINIKQANRLSMKRAVESLKTKDNKFIKPDLI----VIDA 118
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLR--GWIFEETAENMHR 190
EK + Q + FV K + LYP +S ASIVAKV RD ++ I+ + H+
Sbjct: 119 EKIDTDIKQ----MSFV--KGDEKLYP-ISCASIVAKVIRDEYMKDMAVIYPQYGFEKHK 171
Query: 191 NFGSGYPGDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWES 232
+G+ H+ +I G C H K + L+E+
Sbjct: 172 GYGTKL---HREMI--------LEHGECPLHRKTFLRKLYEN 202
>gi|71894629|ref|YP_278737.1| ribonuclease HII [Mycoplasma synoviae 53]
Length = 237
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 85/179 (47%), Gaps = 18/179 (10%)
Query: 4 EAALPK-WASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKR 62
EA + K + + + GIDE G G P++ +Y P + L L DSK L +EK
Sbjct: 5 EAEIKKIYDKSKFVFGIDEVGVGEFFTPLIATAVYVPKDKLEILKNLGVKDSKLLSDEKI 64
Query: 63 EELFEDLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEI---SHDSAI-GLITRVLNIG 118
+++F D+K + +A +I + + K N NEI +H AI L +V
Sbjct: 65 KKVFNDIK--SHIQYASALISQKSYNILF---TKFNANEIKFLAHAEAINNLRKKVKKSE 119
Query: 119 ILLTEVYLDTVGDAEKYQAKLSQRFPSI--------KFVVSKKADSLYPVVSGASIVAK 169
+L+ + Y+++ KY K+ + + K + KKA+S Y V+ ASIVA+
Sbjct: 120 LLIIDAYVNSDPSFNKYYEKIIVSYKDLYGFSPWKEKIAILKKAESHYIEVAAASIVAR 178
>gi|313889379|ref|ZP_07823027.1| ribonuclease HII [Streptococcus pseudoporcinus SPIN 20026]
gi|416851618|ref|ZP_11908763.1| ribonuclease HII [Streptococcus pseudoporcinus LQ 940-04]
gi|313122211|gb|EFR45302.1| ribonuclease HII [Streptococcus pseudoporcinus SPIN 20026]
gi|356739107|gb|EHI64339.1| ribonuclease HII [Streptococcus pseudoporcinus LQ 940-04]
Length = 257
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 91/189 (48%), Gaps = 26/189 (13%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
CI GIDE GRGP+ GP+V C+ P + + + LN DSK + + K LFE +K +
Sbjct: 72 CIAGIDEVGRGPLAGPVVAACVVLPKNCK--IKGLN--DSKKIPKSKHITLFEQIK-KQA 126
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
+G + I+D + + IN+ + + + + I + + ++ + +D +
Sbjct: 127 MGIGIGIVDNEMI-------DTINIYQATKLAMLEAINNLKKVEVIPDYLLIDAM----- 174
Query: 135 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGS 194
L P + + K D+ ++ ASI+AKVTRD+ + +++T +
Sbjct: 175 ---TLDISIPQMPLI---KGDANSLSIAAASIIAKVTRDQLMMS--YDQTYPGYDFAQNA 226
Query: 195 GYPGDHKHI 203
GY G KH+
Sbjct: 227 GY-GTKKHL 234
>gi|271499509|ref|YP_003332534.1| Ribonuclease H [Dickeya dadantii Ech586]
gi|270343064|gb|ACZ75829.1| Ribonuclease H [Dickeya dadantii Ech586]
Length = 198
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 84/186 (45%), Gaps = 31/186 (16%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
CI G+DE GRGP++G +V + S + ADSKTL E++R L+++++ +
Sbjct: 12 CIAGVDEVGRGPLVGAVVTAAVILDPSRP----IVGLADSKTLSEKRRLALYDEIR-EKA 66
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
+ W++ +P E+ LN I H + + + V + + V +D
Sbjct: 67 LAWSLGRAEPEEID---------TLN-ILHATMLAMQRAVAALPVTPDFVLID------- 109
Query: 135 YQAKLSQRFPSIKFVVSK--KADSLYPVVSGASIVAKVTRDRTLR--GWIFEETAENMHR 190
R P++ K DS +S ASI+AKVTRDR + F E H+
Sbjct: 110 -----GNRCPALPMPSQAVVKGDSRVAEISAASILAKVTRDREMEVLDQQFPEYGFAQHK 164
Query: 191 NFGSGY 196
+ + Y
Sbjct: 165 GYPTAY 170
>gi|406947101|gb|EKD78098.1| ribonuclease HII [uncultured bacterium]
Length = 196
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 77/163 (47%), Gaps = 27/163 (16%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I G+DEAGRGP+ GP+ + T L DSK L E+KRE+LF ++ +
Sbjct: 8 IAGVDEAGRGPLAGPVFAAAVI----LNPTHNILELTDSKLLTEKKREKLFTEI-TEKCI 62
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
++V E I+ I S + + V + ++ EV++D
Sbjct: 63 SYSVAFSSVAE----------IDEMNILQASLLAMRRAVAQLTVVPHEVWVD-------- 104
Query: 136 QAKLSQRFP-SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLR 177
+ R P K ++ + D L PV+S ASI+AKVTRDR ++
Sbjct: 105 -GNQNPRCPYPTKLII--QGDFLIPVISAASIIAKVTRDRLMK 144
>gi|148284488|ref|YP_001248578.1| ribonuclease HII [Orientia tsutsugamushi str. Boryong]
gi|189043633|sp|A5CDI4.1|RNH2_ORITB RecName: Full=Ribonuclease HII; Short=RNase HII
gi|146739927|emb|CAM79925.1| ribonuclease HII [Orientia tsutsugamushi str. Boryong]
Length = 205
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 88/180 (48%), Gaps = 27/180 (15%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+ G+DEAGRGP+ GP+V + Q++ + DSK L + KRE ++ K+ +S
Sbjct: 16 VAGVDEAGRGPLAGPVVAAAV----VVNQSIMIDDIKDSKVLSKSKRESCYD--KITNSY 69
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
+++ I +E+ +K N+ E + + I V N+ I+ T+V +D
Sbjct: 70 YYSIGIASVQEI-------DKYNILEAT---KLACIRAVKNLAIIPTKVLVDG------- 112
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 195
+ F +F+ + D + +S ASIVAKVTRDR ++ E ++N G G
Sbjct: 113 ----NMNFTDNRFISIVRGDQICYSISSASIVAKVTRDRIMQILHKEYPVYGWNQNCGYG 168
>gi|56416548|ref|YP_153622.1| ribonuclease HII [Anaplasma marginale str. St. Maries]
gi|56387780|gb|AAV86367.1| ribonuclease HII [Anaplasma marginale str. St. Maries]
Length = 339
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 87/185 (47%), Gaps = 33/185 (17%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCP---CSYQQTLATLNFADSKTLKEEKREELFEDLKVN 72
I+G+DE G G + GP+V +Y P C Y + + DSK L +KREELF K+
Sbjct: 121 IVGVDEVGYGAIAGPVVAAAVYLPERECDYIK-----DIKDSKALSSKKREELF--CKIT 173
Query: 73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
+ V RE+ N + + IS A+ N+G+ V +D
Sbjct: 174 AHAKYGVGFARVREIE----QHNILVASHISMKRALQ------NLGVKADLVLVDG---- 219
Query: 133 EKYQAKLSQRFP-SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW--IFEETAENMH 189
++ P ++K +V K DS+ ++ ASI+AKVTRDR +R + E A N +
Sbjct: 220 ----SRAPAGLPWAVKTIV--KGDSISTSIAAASIIAKVTRDRFMRRLHEQYPEYAWNQN 273
Query: 190 RNFGS 194
+G+
Sbjct: 274 CGYGT 278
>gi|357038747|ref|ZP_09100544.1| Ribonuclease H [Desulfotomaculum gibsoniae DSM 7213]
gi|355359539|gb|EHG07301.1| Ribonuclease H [Desulfotomaculum gibsoniae DSM 7213]
Length = 263
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 88/186 (47%), Gaps = 34/186 (18%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+ G+DEAGRGP+ GP+V + P + + DSK + +R +L +K ++
Sbjct: 76 VAGVDEAGRGPLAGPVVAAAVILP----EVFLLEDLDDSKKIAPVRRAKLDTVIK-KTAL 130
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
W+V I N+I+L I H + + ++ R LN + E+ L
Sbjct: 131 AWSVGIS----------TVNEIDLYNIHHATMLAML-RALNSLDMRPELVL--------- 170
Query: 136 QAKLSQRFPSIKFVVSKKA----DSLYPVVSGASIVAKVTRDRTLRGW--IFEETAENMH 189
+ RF + +KA D L P ++ AS+VAKVTRDR ++ + ++ E + H
Sbjct: 171 ---IDGRFTLPDTNIDQKAIVGGDGLCPSIAAASVVAKVTRDRLMQIYHLLYPEYGFDSH 227
Query: 190 RNFGSG 195
+ +G+
Sbjct: 228 KGYGTA 233
>gi|217076334|ref|YP_002334050.1| ribonuclease HII [Thermosipho africanus TCF52B]
gi|226736825|sp|B7IF45.1|RNH2_THEAB RecName: Full=Ribonuclease HII; Short=RNase HII
gi|217036187|gb|ACJ74709.1| ribonuclease HII [Thermosipho africanus TCF52B]
Length = 220
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 95/204 (46%), Gaps = 32/204 (15%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
+ G+DEAGRGP+ GP+V + + + L+ DSK L KRE+LF L++
Sbjct: 2 IVAGVDEAGRGPLFGPVVAAAVIL----NEEIDGLD--DSKKLTSRKREKLF--LEIIKK 53
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
+A+ I E+ N ++ EI+ D A+ + + +N I +
Sbjct: 54 SYFAISIATADEID----KFNILHATEIAMDRALERLRKKINFDIAFVD----------- 98
Query: 135 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGS 194
L+ +FP F K DSL +S ASI+AKV RDR + + + ++ + ++
Sbjct: 99 -GKNLNLKFP---FKCIVKGDSLVKEISAASILAKVVRDRIIVSYAKKFSSYMLEKH--K 152
Query: 195 GYPGD-HKHII--FGFPSLVRFSW 215
GYP H +I G L R ++
Sbjct: 153 GYPTQLHLKLIKEHGLTPLHRLTY 176
>gi|449115883|ref|ZP_21752343.1| ribonuclease HII [Treponema denticola H-22]
gi|448955369|gb|EMB36136.1| ribonuclease HII [Treponema denticola H-22]
Length = 198
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 94/197 (47%), Gaps = 30/197 (15%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+ GIDEAGRGP+ GP+ + P S+ ++ DSK L E+KREE+ + + + +V
Sbjct: 2 LCGIDEAGRGPLAGPVTAPAVILPSSFDFSI----LKDSKKLTEKKREEVRKTIYADPNV 57
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYL--DTVGDAE 133
WA+ E+ + + E +++ GL ++ L + ++ D + D
Sbjct: 58 IWAIGWASNYEIDEINILQATFLAMERAYE---GLYLKLQEFCKLNNDKFIEPDIIVDG- 113
Query: 134 KYQAKLSQRFPSIKFVVSKKA-----DSLYPVVSGASIVAKVTRDRTL--RGWIFEETAE 186
P+IK S KA DS+Y V++ ASI+AK RD+ + W++ E
Sbjct: 114 -------NFIPNIKNCSSIKALVKADDSVYEVMA-ASILAKTARDKMMIRYSWLYPEYGY 165
Query: 187 NMHRNFGSGYPGDHKHI 203
H+ +G+ KHI
Sbjct: 166 EKHKGYGT-----KKHI 177
>gi|422340104|ref|ZP_16421059.1| ribonuclease HII [Fusobacterium nucleatum subsp. polymorphum F0401]
gi|355370349|gb|EHG17734.1| ribonuclease HII [Fusobacterium nucleatum subsp. polymorphum F0401]
Length = 213
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 91/181 (50%), Gaps = 22/181 (12%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
++G+DEAGRGP+ GP+V + Y + L +N DSK L E+KRE+L++ + N V
Sbjct: 15 VIGVDEAGRGPLAGPVVAAAVILK-EYTEELNEIN--DSKKLTEKKREKLYDIIMKNFDV 71
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
+ ++ ++ N +N + ++ A+ + + N + Y V K
Sbjct: 72 AIGISTVE------EIDKLNILNADFLAMRRALNELKSIRN-----EKEYTVLVDGNLKI 120
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW--IFEETAENMHRNFG 193
+ + ++FP + K D+ ++ ASI+AKVTRDR ++ I+ + H+ +G
Sbjct: 121 KEYVGKQFPIV------KGDAKSLSIAAASIIAKVTRDRFMKDLASIYPDYCFEKHKGYG 174
Query: 194 S 194
+
Sbjct: 175 T 175
>gi|348686595|gb|EGZ26410.1| hypothetical protein PHYSODRAFT_481980 [Phytophthora sojae]
Length = 255
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 88/191 (46%), Gaps = 29/191 (15%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
++G+DEAGRGP+ GP+V + P + DSK + E +RE LFE L + S
Sbjct: 51 TVIGVDEAGRGPLAGPVVAAACHVPLD----VTIEGVDDSKKISEPQREALFELLTNHPS 106
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
+ +AV + + + ++IN+ + S +S V + ++ + D K
Sbjct: 107 ITYAVHVNSAQRI-------DEINILQASLESMTKSANEVAERLQQTDKTFV--LVDGNK 157
Query: 135 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG- 193
L P+ V K DS ++ ASI+AKVTRDR +R + + + +G
Sbjct: 158 LPPTLE--LPAEAVV---KGDSKVYSIAAASIIAKVTRDRLMREY------DEQYPQYGL 206
Query: 194 ---SGYPG-DH 200
GYP DH
Sbjct: 207 AKHKGYPTRDH 217
>gi|144575201|gb|AAZ44026.2| ribonuclease HII [Mycoplasma synoviae 53]
Length = 242
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 85/179 (47%), Gaps = 18/179 (10%)
Query: 4 EAALPK-WASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKR 62
EA + K + + + GIDE G G P++ +Y P + L L DSK L +EK
Sbjct: 10 EAEIKKIYDKSKFVFGIDEVGVGEFFTPLIATAVYVPKDKLEILKNLGVKDSKLLSDEKI 69
Query: 63 EELFEDLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEI---SHDSAI-GLITRVLNIG 118
+++F D+K + +A +I + + K N NEI +H AI L +V
Sbjct: 70 KKVFNDIK--SHIQYASALISQKSYNILF---TKFNANEIKFLAHAEAINNLRKKVKKSE 124
Query: 119 ILLTEVYLDTVGDAEKYQAKLSQRFPSI--------KFVVSKKADSLYPVVSGASIVAK 169
+L+ + Y+++ KY K+ + + K + KKA+S Y V+ ASIVA+
Sbjct: 125 LLIIDAYVNSDPSFNKYYEKIIVSYKDLYGFSPWKEKIAILKKAESHYIEVAAASIVAR 183
>gi|291294813|ref|YP_003506211.1| ribonuclease H [Meiothermus ruber DSM 1279]
gi|290469772|gb|ADD27191.1| Ribonuclease H [Meiothermus ruber DSM 1279]
Length = 215
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/217 (26%), Positives = 98/217 (45%), Gaps = 26/217 (11%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+ G+DEAGRG + GP+V + P + L F DSKTL RE L E ++ ++
Sbjct: 15 VAGVDEAGRGALAGPVVAAAVILPPPKEPAL--YPFRDSKTLTPRAREHLAEQVRAV-AL 71
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRV-LNIGILLTEVYLDTVGDAEK 134
W V + E+ +++ + +H +A + ++ ++ LLT+ YL + ++
Sbjct: 72 AWGVGWAEVAEI-------DRLGILRATHLAAARALEQLKVSPEALLTD-YLRLEQEWQQ 123
Query: 135 YQAKLSQRFPSIKFV-VSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG 193
Y R + + KAD P V+ ASI+AKV RDR + E E + +G
Sbjct: 124 YLRNNPSRPDAPHLLRAPPKADRHSPTVAAASILAKVARDR------YMEALEQRYPGYG 177
Query: 194 SGYPGDHKHIIFGFPSLVRF--SWGTCTSHFKDIVEV 228
+H +G +R + G C +H + V
Sbjct: 178 FA-----QHKGYGTTLHLRALKALGPCGAHRRTFAPV 209
>gi|295706298|ref|YP_003599373.1| ribonuclease HII [Bacillus megaterium DSM 319]
gi|294803957|gb|ADF41023.1| ribonuclease HII [Bacillus megaterium DSM 319]
Length = 255
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 86/194 (44%), Gaps = 43/194 (22%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I G+DE GRGP+ GP+V + P + DSK L E KREE +E++ +V
Sbjct: 73 IAGVDEVGRGPLAGPVVAAAVILPPDF----FLPGLTDSKKLSEAKREEFYEEI-CKSAV 127
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG-DAEK 134
+ IID + + IN+ E + + + I L V D + DA K
Sbjct: 128 AIGIGIIDAEVI-------DSINIYEATK--------KAMTEAIELLAVQPDELLIDAMK 172
Query: 135 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGS 194
+SQ+ SI K D+ ++ +S++AKVTRDR M + G
Sbjct: 173 LPVPISQQ--SI-----IKGDATSISIAASSVIAKVTRDR-------------MMKELGE 212
Query: 195 GYP--GDHKHIIFG 206
YP G KH+ +G
Sbjct: 213 RYPAYGFEKHMGYG 226
>gi|416046042|ref|ZP_11575580.1| ribonuclease HII [Aggregatibacter actinomycetemcomitans serotype d
str. I63B]
gi|347994875|gb|EGY36112.1| ribonuclease HII [Aggregatibacter actinomycetemcomitans serotype d
str. I63B]
Length = 199
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 81/165 (49%), Gaps = 30/165 (18%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
I G+DE GRGP++G +V + +QT+ L ADSKTL E+KR L E++K +
Sbjct: 12 LIAGVDEVGRGPLVGAVVTAAVIL--DPKQTIEGL--ADSKTLSEKKRLLLAEEIK-QKA 66
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
+ WA+ +P E+ LN I H S + + + ++ I V +D
Sbjct: 67 LAWALGRAEPHEID---------ELN-ILHASMLAMERAIKHLKIQPHFVLMD------- 109
Query: 135 YQAKLSQRFPSIKFVVSK---KADSLYPVVSGASIVAKVTRDRTL 176
R P + ++ K D+L P +S ASI+AKV RD+ +
Sbjct: 110 -----GNRIPPNLMIPAQAVVKGDALVPEISAASILAKVARDQEM 149
>gi|359401458|ref|ZP_09194426.1| ribonuclease HII [Novosphingobium pentaromativorans US6-1]
gi|357597133|gb|EHJ58883.1| ribonuclease HII [Novosphingobium pentaromativorans US6-1]
Length = 204
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 82/184 (44%), Gaps = 18/184 (9%)
Query: 12 SNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKV 71
S ++G+DEAGRGP+ GP+V G + C + DSK L + +R +L E +K
Sbjct: 8 SGGIVIGVDEAGRGPLAGPVVAGAVLL-CKPRPP----GLDDSKKLSKARRLQLEEVIK- 61
Query: 72 NDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGD 131
WAV ++D E+ N ++ A+ + IG EV +D G+
Sbjct: 62 -RRCQWAVGVVDVEEID----RLNIFGATMLAMTRAVAALCE--KIGTEADEVLVD--GN 112
Query: 132 AEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRN 191
+ + R+ + V D+L P +S ASI+AK RD +RG RN
Sbjct: 113 MTPHGRREEWRWKARAIV---GGDALEPCISAASIIAKEHRDAIMRGLAQVHPQYGWERN 169
Query: 192 FGSG 195
G G
Sbjct: 170 AGYG 173
>gi|255002889|ref|ZP_05277853.1| ribonuclease HII [Anaplasma marginale str. Puerto Rico]
Length = 238
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 88/185 (47%), Gaps = 34/185 (18%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCP---CSYQQTLATLNFADSKTLKEEKREELFEDLKVN 72
I+G+DE G G + GP+V +Y P C Y + + DSK L +KREELF K+
Sbjct: 21 IVGVDEVGYGAIAGPVVAAAVYLPERECDYIK-----DIKDSKALSSKKREELF--CKIT 73
Query: 73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
+ V RE+ + N+ SH S + + N+G+ V +D
Sbjct: 74 AHAKYGVGFARVREI-------EQHNILVASHIS----MKTLQNLGVKADLVLVDG---- 118
Query: 133 EKYQAKLSQRFP-SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW--IFEETAENMH 189
++ P ++K +V K DS+ ++ ASI+AKVTRDR +R + E A N +
Sbjct: 119 ----SRAPAGLPWAVKTIV--KGDSISTSIAAASIIAKVTRDRFMRRLHEQYPEYAWNQN 172
Query: 190 RNFGS 194
+G+
Sbjct: 173 CGYGT 177
>gi|311030147|ref|ZP_07708237.1| Ribonuclease H [Bacillus sp. m3-13]
Length = 256
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 80/182 (43%), Gaps = 26/182 (14%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDE GRGP+ GP+V + P + DSK L +KRE F +K ++
Sbjct: 74 IAGIDEVGRGPLAGPVVAAAVILPEDFHLP----GLTDSKKLNAQKREHFFRYVK-EHAI 128
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
+ + IID RE+ +++N+ E + + ++ V N+ + +D +
Sbjct: 129 SYGIGIIDSREI-------DQVNIYEA---TKLAMVQAVKNLHHTPEHLLIDAM------ 172
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 195
KL + K D+ ++ AS++AK TRD ++ E +N G G
Sbjct: 173 --KLDLDIEQTSII---KGDATSISIAAASVLAKETRDTYMKNLAQEFPDYGFDKNMGYG 227
Query: 196 YP 197
P
Sbjct: 228 TP 229
>gi|253687351|ref|YP_003016541.1| Ribonuclease H [Pectobacterium carotovorum subsp. carotovorum PC1]
gi|259494070|sp|C6DAJ7.1|RNH2_PECCP RecName: Full=Ribonuclease HII; Short=RNase HII
gi|251753929|gb|ACT12005.1| Ribonuclease H [Pectobacterium carotovorum subsp. carotovorum PC1]
Length = 198
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 79/164 (48%), Gaps = 29/164 (17%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
CI G+DE GRGP++G +V + T + ADSK L E++R L++++K +
Sbjct: 12 CIAGVDEVGRGPLVGAVVTAAVIL----DPTRPIVGLADSKQLSEKRRLALYDEIK-EKA 66
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
+ W++ +P E+ +++N I H + + + V + ++ V +D
Sbjct: 67 LAWSLGRAEPEEI-------DQLN---ILHATMLAMQRAVAGLAVVPDFVLID------- 109
Query: 135 YQAKLSQRFPSIKFVVSK--KADSLYPVVSGASIVAKVTRDRTL 176
R P++ K DS +S ASI+AKVTRDR +
Sbjct: 110 -----GNRCPALPMPSQAVVKGDSRVAEISAASIMAKVTRDREM 148
>gi|222474916|ref|YP_002563331.1| ribonuclease HII (rnhB) [Anaplasma marginale str. Florida]
gi|222419052|gb|ACM49075.1| ribonuclease HII (rnhB) [Anaplasma marginale str. Florida]
Length = 339
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 87/185 (47%), Gaps = 33/185 (17%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCP---CSYQQTLATLNFADSKTLKEEKREELFEDLKVN 72
I+G+DE G G + GP+V +Y P C Y + + DSK L +KREELF K+
Sbjct: 121 IVGVDEVGYGAIAGPVVAAAVYLPERECDYIK-----DIKDSKALSSKKREELF--CKIT 173
Query: 73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
+ V RE+ N + + IS A+ N+G+ V +D
Sbjct: 174 AHARYGVGFARVREIE----QHNILVASHISMKRALQ------NLGVKADLVLVDG---- 219
Query: 133 EKYQAKLSQRFP-SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW--IFEETAENMH 189
++ P ++K +V K DS+ ++ ASI+AKVTRDR +R + E A N +
Sbjct: 220 ----SRAPAGLPWAVKTIV--KGDSISTSIAAASIIAKVTRDRFMRRLHEQYPEYAWNQN 273
Query: 190 RNFGS 194
+G+
Sbjct: 274 CGYGT 278
>gi|332797850|ref|YP_004459350.1| ribonuclease HII [Acidianus hospitalis W1]
gi|332695585|gb|AEE95052.1| ribonuclease HII [Acidianus hospitalis W1]
Length = 192
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 93/198 (46%), Gaps = 28/198 (14%)
Query: 31 MVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGWAVDIIDPRELSAK 90
MV + + L + DSK L EKRE+LFE + + + V+ P E+ +
Sbjct: 1 MVIAGVIIDEKIEGMLKEVGVKDSKILSREKREKLFEIIS-EFAEAYIVNKAYPNEIDSS 59
Query: 91 MLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQAKLSQRFPSIKFVV 150
NLNE+++ I +I L + + V +D VG+ + K+ + +K V
Sbjct: 60 -------NLNELTYSKVIQIIYASLPLHPKI--VTIDKVGNEDIVIMKIREL--GLKDNV 108
Query: 151 SKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGD---HKHIIFGF 207
AD Y S ASI+AKVTRDR + ++ + ++ +FGSGYP D K II +
Sbjct: 109 VFNADVKYIEASAASIIAKVTRDRII------DSLKKIYGDFGSGYPSDPKTRKWIIEIY 162
Query: 208 -------PSLVRFSWGTC 218
P ++R +W T
Sbjct: 163 EKDKNNPPPIIRRTWKTL 180
>gi|171912710|ref|ZP_02928180.1| Ribonuclease H [Verrucomicrobium spinosum DSM 4136]
Length = 233
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 86/187 (45%), Gaps = 32/187 (17%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
+ G+DEAGRGP+ GP+ + P + T A L+ DSK L E +RE ++++L
Sbjct: 43 VVAGVDEAGRGPLAGPVSVAAVILPDDF--THAELH--DSKQLTELRRERIYDELMGRAD 98
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
V W +++ E+ ++IN+ + + +G+ V + +L V +D
Sbjct: 99 VLWCHVMVEVDEI-------DRINILQATR---MGMRRAVQGLSMLPHAVLIDGT----- 143
Query: 135 YQAKLSQRFPSIKFVVSKKA----DSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHR 190
P F V +A D+L ++ AS++AKV RDR +R + +
Sbjct: 144 ---------PVPDFPVPHRALVKGDALSLSIAAASVIAKVARDRLMRQAALDYPVYGFDQ 194
Query: 191 NFGSGYP 197
+ G G P
Sbjct: 195 HKGYGTP 201
>gi|242240382|ref|YP_002988563.1| ribonuclease HII [Dickeya dadantii Ech703]
gi|242132439|gb|ACS86741.1| Ribonuclease H [Dickeya dadantii Ech703]
Length = 198
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 89/186 (47%), Gaps = 31/186 (16%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
CI G+DE GRGP++G +V + + + +A L ADSK L E++R L+++++ +
Sbjct: 12 CIAGVDEVGRGPLVGAVVTAAVILDPA--KPIAGL--ADSKQLSEKRRRVLYDEIR-EKA 66
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
W++ +P E+ +++N I H + + + V + + V +D
Sbjct: 67 RAWSLGRAEPEEI-------DQLN---ILHATMLAMQRAVAGLPVTPDYVLID------- 109
Query: 135 YQAKLSQRFPSIKF--VVSKKADSLYPVVSGASIVAKVTRDRTLRGW--IFEETAENMHR 190
R PS+ + K DS +S ASI+AKVTRDR + +F E H+
Sbjct: 110 -----GNRCPSLPMPSMAVVKGDSRVAEISAASILAKVTRDREMEELDKLFPEYGFAQHK 164
Query: 191 NFGSGY 196
+ + Y
Sbjct: 165 GYPTAY 170
>gi|330817425|ref|YP_004361130.1| Ribonuclease HII [Burkholderia gladioli BSR3]
gi|327369818|gb|AEA61174.1| Ribonuclease HII [Burkholderia gladioli BSR3]
Length = 217
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 81/183 (44%), Gaps = 31/183 (16%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+ G+DEAGRGP+ GP+V + L DSK L +KRE L+ ++ V S
Sbjct: 31 VCGVDEAGRGPLAGPVVAAAVI----LDPARPILGLDDSKALSAKKRELLYHEI-VAHSR 85
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
W V SA + + +N I H + + + V + +L T +D
Sbjct: 86 AWCV-------ASASVEEIDTLN---ILHATMLAMRRAVEGLSLLPTLAKID-------- 127
Query: 136 QAKLSQRFPS--IKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW--IFEETAENMHRN 191
R P+ I+ D+L P +S ASI+AKVTRDR L F ++H
Sbjct: 128 ----GNRCPTLGIRSEAIVGGDALVPSISAASIIAKVTRDRLLVDLHATFPHYGFDVHAG 183
Query: 192 FGS 194
+G+
Sbjct: 184 YGT 186
>gi|416985248|ref|ZP_11938386.1| ribonuclease HII [Burkholderia sp. TJI49]
gi|325519162|gb|EGC98633.1| ribonuclease HII [Burkholderia sp. TJI49]
Length = 214
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 86/183 (46%), Gaps = 31/183 (16%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+ G+DEAGRGP+ GP+V + Q + L+ DSK L +KR+ L+E L + SV
Sbjct: 28 VCGVDEAGRGPLAGPVVAAAVIL--DPAQPIEGLD--DSKALSAKKRDALYE-LIIARSV 82
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
+ V SA + ++I+ I H + + + V + +L T +D
Sbjct: 83 SYCV-------ASASV---DEIDTLNILHATMLAMKRAVEGLAVLPTLAQID-------- 124
Query: 136 QAKLSQRFP--SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI--FEETAENMHRN 191
R P S++ D+L P +S ASI+AKVTRDR L F N+H
Sbjct: 125 ----GNRCPTLSVRAEAIVSGDALVPSISAASILAKVTRDRMLVDLHERFPVYGFNVHAG 180
Query: 192 FGS 194
+G+
Sbjct: 181 YGT 183
>gi|381210005|ref|ZP_09917076.1| ribonuclease H [Lentibacillus sp. Grbi]
Length = 256
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/202 (28%), Positives = 89/202 (44%), Gaps = 46/202 (22%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I G+DEAGRGP+ GP+V + P ++ L DSK L E REE F +K N +V
Sbjct: 73 IAGMDEAGRGPLAGPVVAAAVILPRDFK----LLGLNDSKQLNETTREEYFTIIK-NAAV 127
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
+ + IID ++ ++IN+ E + + + + + L V +D V
Sbjct: 128 SYGIAIIDNYKI-------DQINIYEATK---LAMYEAINQLNPLPDHVLIDAVS----- 172
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 195
L Q S + + K D V+ AS++AKVTRD + ++
Sbjct: 173 ---LDQLTCSSESIT--KGDQKSVSVAAASVLAKVTRD-------------GLMKDLDKK 214
Query: 196 YPGDHKHIIFGFPSLVRFSWGT 217
YPG +GF S +GT
Sbjct: 215 YPG------YGFAS--NMGYGT 228
>gi|254304340|ref|ZP_04971698.1| ribonuclease H [Fusobacterium nucleatum subsp. polymorphum ATCC
10953]
gi|148324532|gb|EDK89782.1| ribonuclease H [Fusobacterium nucleatum subsp. polymorphum ATCC
10953]
Length = 217
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 91/181 (50%), Gaps = 22/181 (12%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
++G+DEAGRGP+ GP+V + Y + L +N DSK L E+KRE+L++ + N V
Sbjct: 19 VIGVDEAGRGPLAGPVVAAAVILK-EYTEELNEIN--DSKKLTEKKREKLYDIIMKNFDV 75
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
+ ++ ++ N +N + ++ A+ + + N + Y V K
Sbjct: 76 AVGISTVE------EIDKLNILNADFLAMRRALNDLKNIKN-----EKEYTVLVDGNLKI 124
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW--IFEETAENMHRNFG 193
+ + ++FP + K D+ ++ ASI+AKVTRDR ++ I+ + H+ +G
Sbjct: 125 KEYVGKQFPIV------KGDAKSLSIAAASIIAKVTRDRFMKDLASIYPDYCFEKHKGYG 178
Query: 194 S 194
+
Sbjct: 179 T 179
>gi|383316023|ref|YP_005376865.1| ribonuclease HII [Frateuria aurantia DSM 6220]
gi|379043127|gb|AFC85183.1| ribonuclease HII [Frateuria aurantia DSM 6220]
Length = 198
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 95/211 (45%), Gaps = 43/211 (20%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I G+DEAGRGP+ GP+ + + +A LN DSK L E++RE L+E + + ++
Sbjct: 7 IAGVDEAGRGPLAGPLTVAAVIL--DPARPIAGLN--DSKKLSEKRREALYEQI-IERAL 61
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
W ++II+ E+ A LN + L G+ V + E +D G+
Sbjct: 62 AWRIEIIEVAEIDA--LNILQATLT--------GMRRAVAGLEPAADEALID--GN---- 105
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF-GS 194
K+ P + D L P + ASI+AKV RDR ++ + ++F G
Sbjct: 106 --KIPPDMPCPARAIVG-GDGLEPAIGAASILAKVCRDRIMKA---------LEQDFPGY 153
Query: 195 GYPGDHKHIIFGFPS----LVRFSWGTCTSH 221
G+ HK G+P+ L G C H
Sbjct: 154 GF-AVHK----GYPTAAHQLALQHLGPCPQH 179
>gi|398345261|ref|ZP_10529964.1| ribonuclease H [Leptospira inadai serovar Lyme str. 10]
Length = 221
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 63/195 (32%), Positives = 88/195 (45%), Gaps = 31/195 (15%)
Query: 14 PCIMGIDEAGRGPVLGPMVYGCL-YCPCSYQQTLATLNFA---DSKTLKEEKREELFEDL 69
PC GIDEAGRGP GP+ + + P + L N + DSK L E KRE L+ +
Sbjct: 19 PC--GIDEAGRGPYAGPLSLALVAFSPEILESILVGKNLSGLNDSKKLSESKREILYSQI 76
Query: 70 KVNDSVGWAVDIIDPRELSAKMLNKNKIN---LNEISHDSAIGLITRVLNIGILLTEVYL 126
+ S+ + S ++ N IN L I + L T + +G LT + +
Sbjct: 77 REMASICCHTFV------SHTFIDNNGINRAVLEGIRKCYRMALRTPIAIVGGSLT-LLI 129
Query: 127 DTVGDAEKYQAKLSQRFPSIKFVVSK-----KADSLYPVVSGASIVAKVTRDRTLRGWI- 180
D + KY P K + SK K DS +S ASI+AKVTRDR ++G
Sbjct: 130 DGNYNFSKY--------PESKSISSKSHYYTKGDSRIVSISAASIIAKVTRDRWMKGIAG 181
Query: 181 -FEETAENMHRNFGS 194
F H+ +GS
Sbjct: 182 KFPGYGFESHKGYGS 196
>gi|422342041|ref|ZP_16422981.1| ribonuclease HII [Treponema denticola F0402]
gi|325474109|gb|EGC77297.1| ribonuclease HII [Treponema denticola F0402]
Length = 198
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 93/197 (47%), Gaps = 30/197 (15%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+ GIDEAGRGP+ GP+ + P + ++ DSK L E+KREE+ + + + +V
Sbjct: 2 LCGIDEAGRGPLAGPVTAAAVILPSRFDFSI----LKDSKKLTEKKREEVRKTIYADPNV 57
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYL--DTVGDAE 133
W++ E+ + + E +++ GL ++ L + ++ D + D
Sbjct: 58 LWSIGWASNYEIDEINILQATFLAMERAYE---GLYLKLQEFCKLNNDKFIEPDIIVDG- 113
Query: 134 KYQAKLSQRFPSIKFVVSKKA-----DSLYPVVSGASIVAKVTRDRTL--RGWIFEETAE 186
P+IK S KA DS+Y V++ ASI+AK RDR + W++ E
Sbjct: 114 -------NFIPNIKNCSSIKALVKADDSVYEVMA-ASILAKTARDRMMIRYSWLYPEYGY 165
Query: 187 NMHRNFGSGYPGDHKHI 203
H+ +G+ KHI
Sbjct: 166 EKHKGYGT-----KKHI 177
>gi|443469619|ref|ZP_21059773.1| Ribonuclease HII [Pseudomonas pseudoalcaligenes KF707]
gi|442899071|gb|ELS25602.1| Ribonuclease HII [Pseudomonas pseudoalcaligenes KF707]
Length = 200
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 87/201 (43%), Gaps = 42/201 (20%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
C+ G+DE GRGP+ GP+V + L DSK L E +R+ LF++++ +
Sbjct: 13 CVAGVDEVGRGPLCGPVVTAAVI----LDPARPILGLNDSKKLSEARRDALFDEIR-EKA 67
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
+ W + A++ +++N I H + + + V + + +D
Sbjct: 68 LAWCIA-------RAEVEEIDQLN---ILHATMLAMQRAVEGLSVTPKLALID------- 110
Query: 135 YQAKLSQRFPSIKFVVSK--KADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF 192
R P +K + K DS P ++ ASI+AKV+RDR E E R
Sbjct: 111 -----GNRCPKLKVPAAPVVKGDSQVPAIAAASILAKVSRDR--------EMVELDARYP 157
Query: 193 GSGYPGDHKHIIFGFPSLVRF 213
G G G HK G+P+ V
Sbjct: 158 GYGIAG-HK----GYPTAVHL 173
>gi|387120665|ref|YP_006286548.1| ribonuclease HII [Aggregatibacter actinomycetemcomitans D7S-1]
gi|415757797|ref|ZP_11481463.1| ribonuclease HII [Aggregatibacter actinomycetemcomitans D17P-3]
gi|416055566|ref|ZP_11579608.1| ribonuclease HII [Aggregatibacter actinomycetemcomitans serotype e
str. SCC393]
gi|416069383|ref|ZP_11583260.1| ribonuclease HII [Aggregatibacter actinomycetemcomitans serotype f
str. D18P1]
gi|429734061|ref|ZP_19268104.1| ribonuclease HII [Aggregatibacter actinomycetemcomitans Y4]
gi|444334309|ref|ZP_21149901.1| ribonuclease HII [Aggregatibacter actinomycetemcomitans serotype a
str. A160]
gi|348000172|gb|EGY40969.1| ribonuclease HII [Aggregatibacter actinomycetemcomitans serotype f
str. D18P1]
gi|348002850|gb|EGY43514.1| ribonuclease HII [Aggregatibacter actinomycetemcomitans serotype e
str. SCC393]
gi|348655371|gb|EGY70829.1| ribonuclease HII [Aggregatibacter actinomycetemcomitans D17P-3]
gi|385875157|gb|AFI86716.1| ribonuclease HII [Aggregatibacter actinomycetemcomitans D7S-1]
gi|429153411|gb|EKX96195.1| ribonuclease HII [Aggregatibacter actinomycetemcomitans Y4]
gi|443550570|gb|ELT58806.1| ribonuclease HII [Aggregatibacter actinomycetemcomitans serotype a
str. A160]
Length = 199
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 81/165 (49%), Gaps = 30/165 (18%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
I G+DE GRGP++G +V + +QT+ L ADSKTL E+KR L E++K +
Sbjct: 12 LIAGVDEVGRGPLVGAVVTAAVIL--DPKQTIEGL--ADSKTLSEKKRLLLAEEIK-QKA 66
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
+ WA+ +P E+ LN I H S + + + ++ I V +D
Sbjct: 67 LAWALGRAEPHEID---------ELN-ILHASMLAMERAIKHLKIQPHFVLVD------- 109
Query: 135 YQAKLSQRFPSIKFVVSK---KADSLYPVVSGASIVAKVTRDRTL 176
R P + ++ K D+L P +S ASI+AKV RD+ +
Sbjct: 110 -----GNRIPPNLMIPAQAVVKGDALVPEISAASILAKVARDQEM 149
>gi|379705260|ref|YP_005203719.1| ribonuclease HII [Streptococcus infantarius subsp. infantarius
CJ18]
gi|374681959|gb|AEZ62248.1| ribonuclease HII [Streptococcus infantarius subsp. infantarius
CJ18]
Length = 259
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 89/186 (47%), Gaps = 25/186 (13%)
Query: 11 ASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLK 70
A I GIDE GRGP+ GP+V C+ P + + DSK + ++ EE++E++
Sbjct: 67 AGYEAIGGIDEVGRGPLAGPVVTACVILP----KNCKIKHLNDSKKIPKKHHEEIYEEV- 121
Query: 71 VNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEV-YLDTV 129
+ ++G + +ID N I+ I + +G++ + I +T+ YL +
Sbjct: 122 LARALGVGIGVID----------NNVIDDINIYEATKVGMLQAIDQIKGQVTKADYL--L 169
Query: 130 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH 189
DA + Q+ ++ A+SL ++ ASIVAKVTRDR + + E
Sbjct: 170 IDAMHLDTDIPQQ-----SLIKGDANSLS--IAAASIVAKVTRDRMMADYAKEYPGYAFE 222
Query: 190 RNFGSG 195
+N G G
Sbjct: 223 KNVGYG 228
>gi|331081970|ref|ZP_08331098.1| hypothetical protein HMPREF0992_00022 [Lachnospiraceae bacterium
6_1_63FAA]
gi|330405565|gb|EGG85095.1| hypothetical protein HMPREF0992_00022 [Lachnospiraceae bacterium
6_1_63FAA]
Length = 256
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 91/183 (49%), Gaps = 31/183 (16%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDE GRGP GP+V G + P + L DSK L E+ RE+L++++ + +V
Sbjct: 71 ICGIDEVGRGPFAGPVVAGAVILPPDCE----ILYVNDSKQLSEKMREQLYDEI-MEKAV 125
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRV-LNIGILLTE-VYLDTVGDAE 133
AV P+ + ++IN+ + ++++ ++++ + ILL + V + +
Sbjct: 126 SVAVGYASPQRI-------DEINILQATYEAMREAVSKLAVTPQILLNDAVTIPQIT--- 175
Query: 134 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW--IFEETAENMHRN 191
P + + K D+ ++ ASIVAKVTRDR +R + I E ++
Sbjct: 176 ---------IPQVPII---KGDAKSISIAAASIVAKVTRDRLMREYDKIMPEYGFASNKG 223
Query: 192 FGS 194
+GS
Sbjct: 224 YGS 226
>gi|85711419|ref|ZP_01042478.1| Ribonuclease HII [Idiomarina baltica OS145]
gi|85694920|gb|EAQ32859.1| Ribonuclease HII [Idiomarina baltica OS145]
Length = 188
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 105/227 (46%), Gaps = 49/227 (21%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I G+DEAGRGP+ GP+V + +Q + LN DSK L +KRE L E++K ++
Sbjct: 2 ICGVDEAGRGPIAGPVVAAAVI--LDPEQPIEGLN--DSKKLSAKKRERLSEEIKAK-AL 56
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
W++ D E+ +++N I S + + V + TEV +D
Sbjct: 57 YWSIAQSDVDEI-------DQLN---ILWASMLAMKRAVEALPEAPTEVLVD-------- 98
Query: 136 QAKLSQRFPSIKFVVSKKA----DSLYPVVSGASIVAKVTRDRTLRGW--IFEETAENMH 189
R P + VV +A D+ P ++ ASI+AKV RDR + W + + + H
Sbjct: 99 ----GNRVPDL--VVPARAVVGGDASEPTIAAASILAKVERDRQMLEWHQTYPQYEFDRH 152
Query: 190 RNFGSGYPGDHKHIIFGFPSLVRFSWGTCTSH---FKDIVEVLWESD 233
+ +G+ +H+ L++ +G C H F+ + E L D
Sbjct: 153 KAYGTA-----RHL-----ELLKL-YGPCVIHRRSFRPVREALNACD 188
>gi|169824229|ref|YP_001691840.1| ribonuclease HII [Finegoldia magna ATCC 29328]
gi|167831034|dbj|BAG07950.1| ribonuclease HII [Finegoldia magna ATCC 29328]
Length = 207
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 61/219 (27%), Positives = 102/219 (46%), Gaps = 32/219 (14%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDE GRGP+ GP+V + P + DSK L E+KR + F+D+ +N ++
Sbjct: 14 ICGIDEVGRGPLAGPVVTCAIIMP---KNCEIIEGVTDSKKLSEKKRIK-FKDMILNQAL 69
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
++V+ +D + ++IN+ + + S + + + L V DAE+
Sbjct: 70 AYSVNFVDQGVI-------DEINIKQATRLSMKRAVESLKTKDNKFIKPDL-IVIDAEEI 121
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLR--GWIFEETAENMHRNFG 193
+ Q + FV K + LYP +S ASIVAKV RD ++ I+ + H+ +G
Sbjct: 122 DTDIKQ----MSFV--KGDEKLYP-ISCASIVAKVIRDEYMKEMAVIYPQYGFEKHKGYG 174
Query: 194 SGYPGDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWES 232
+ H+ +I G C H K + L+E+
Sbjct: 175 TKL---HREMI--------LEHGECPLHRKTFLRKLYEN 202
>gi|424780491|ref|ZP_18207364.1| Ribonuclease HII [Catellicoccus marimammalium M35/04/3]
gi|422842893|gb|EKU27340.1| Ribonuclease HII [Catellicoccus marimammalium M35/04/3]
Length = 256
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 81/182 (44%), Gaps = 30/182 (16%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCP--CSYQQTLATLNFADSKTLKEEKREELFEDLKVND 73
I GIDE GRGP+ GP+V + P C T+ LN DSK L E+KREELF ++ +
Sbjct: 72 IAGIDEVGRGPLAGPVVAAAVILPEDC----TIEELN--DSKQLSEKKREELFLAIQ-KE 124
Query: 74 SVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAE 133
++G V I P E+ N +I+ AI + + +L DA
Sbjct: 125 AIGIGVGICSPEEID----EYNIYEATKIAMQRAIAQLKEQPDCLLL----------DA- 169
Query: 134 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG 193
+L P + K D+ ++ ASIVAK RD ++ + E + N G
Sbjct: 170 ---MELPLEIPQQSLI---KGDAKSISIAAASIVAKCIRDGQMKEYAKEYPYYDFEHNMG 223
Query: 194 SG 195
G
Sbjct: 224 YG 225
>gi|291459085|ref|ZP_06598475.1| ribonuclease HII [Oribacterium sp. oral taxon 078 str. F0262]
gi|291418339|gb|EFE92058.1| ribonuclease HII [Oribacterium sp. oral taxon 078 str. F0262]
Length = 247
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 56/222 (25%), Positives = 98/222 (44%), Gaps = 30/222 (13%)
Query: 9 KWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFED 68
++ + I G+DEAGRGP+ GP+V C C + L DSK L E++RE LF +
Sbjct: 31 QYPNLSLIGGVDEAGRGPLAGPVVAAC----CVLPKDALILYLDDSKKLSEKRRELLFPE 86
Query: 69 LKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDT 128
+ ++ + V I+ + + ++IN+ S+++ + +L++ L
Sbjct: 87 I-TKKALAFGVGIVGEKRI-------DEINILNASYEA---MRLSILSVSSKLGRPPELL 135
Query: 129 VGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENM 188
+ DA + P I + DS ++ AS++AKV RDR + + E
Sbjct: 136 LNDAVTIPGIEIPQLPII------RGDSKSLSIAAASVIAKVIRDRLMLRYDREFPGYGF 189
Query: 189 HRNFGSGYPGDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLW 230
R+ G G + I+ S G C H + V+ L+
Sbjct: 190 ARHKGYGTALHREKIL---------SKGLCRIHRRSFVKKLF 222
>gi|51473401|ref|YP_067158.1| ribonuclease HII [Rickettsia typhi str. Wilmington]
gi|383752176|ref|YP_005427276.1| ribonuclease HII [Rickettsia typhi str. TH1527]
gi|383843012|ref|YP_005423515.1| ribonuclease HII [Rickettsia typhi str. B9991CWPP]
gi|73917831|sp|Q68XG6.1|RNH2_RICTY RecName: Full=Ribonuclease HII; Short=RNase HII
gi|51459713|gb|AAU03676.1| Endoribonuclease H [Rickettsia typhi str. Wilmington]
gi|380758819|gb|AFE54054.1| ribonuclease HII [Rickettsia typhi str. TH1527]
gi|380759659|gb|AFE54893.1| ribonuclease HII [Rickettsia typhi str. B9991CWPP]
Length = 193
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 93/208 (44%), Gaps = 30/208 (14%)
Query: 13 NPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVN 72
N + G+DEAGRG ++GP+V + + DSK L + KR+ L+E + N
Sbjct: 14 NYIVAGVDEAGRGSLVGPVVASAVII----DKVDIISGIKDSKKLSKNKRDILYEQITSN 69
Query: 73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
W+ II+ E+ + IN+ E + + V N+ + ++ +D
Sbjct: 70 --YVWSTAIIEHTEI-------DDINILEATKKACT---IAVANLSLKPEKILVDG---- 113
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF 192
+ +F ++F+ D+L ++ ASI+AKVTRDR + E H+N+
Sbjct: 114 -------NMKFSDVRFISIINGDNLSLSIAAASIIAKVTRDRLMLELSAEYPQYLWHKNY 166
Query: 193 GSGYPGDHKHII--FGFPSLVRFSWGTC 218
G G +H I G S R S+ C
Sbjct: 167 GYG-TREHIEAINTHGLSSYHRKSFKFC 193
>gi|436834241|ref|YP_007319457.1| Ribonuclease H [Fibrella aestuarina BUZ 2]
gi|384065654|emb|CCG98864.1| Ribonuclease H [Fibrella aestuarina BUZ 2]
Length = 191
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 84/191 (43%), Gaps = 42/191 (21%)
Query: 18 GIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGW 77
G+DE GRG + GP+V + P YQ + T DSK L +R L D++ D++ W
Sbjct: 14 GLDEVGRGCLAGPVVAAAVILPPDYQHPILT----DSKQLSRPQRNRLQADIR-RDAIAW 68
Query: 78 AVDIIDPRELSAKMLNKNKINLNEIS----HDSAIGLITRVLNIGILLTEVYLDTVGDAE 133
A+ + P ++ ++IN+ + S H + L R ++ + D
Sbjct: 69 AIAEVSPADI-------DRINILQASFLAMHRATDALSVRPEHLLV-----------DGN 110
Query: 134 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG 193
+++ +P + K DSLY ++ AS++AK RD + ET + +G
Sbjct: 111 RFRP-----YPMVPHTCIVKGDSLYLSIAAASVLAKTYRDELM------ETLGRTYPAYG 159
Query: 194 ----SGYPGDH 200
GYP H
Sbjct: 160 WAQNVGYPTAH 170
>gi|157964267|ref|YP_001499091.1| ribonuclease HII [Rickettsia massiliae MTU5]
gi|189043648|sp|A8F0V8.1|RNH2_RICM5 RecName: Full=Ribonuclease HII; Short=RNase HII
gi|157844043|gb|ABV84544.1| Ribonuclease HII [Rickettsia massiliae MTU5]
Length = 194
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 66/211 (31%), Positives = 94/211 (44%), Gaps = 36/211 (17%)
Query: 13 NPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVN 72
N + GIDEAGRGP+ GP+V + + T DSK L ++ RE L+E + N
Sbjct: 15 NCIVAGIDEAGRGPLAGPVVASAVIIDNANIIT----GIKDSKKLSKKTRELLYEQITSN 70
Query: 73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDS-AIGLITRVLNIGILLTEVYLDTVGD 131
WA II E+ + IN+ E + + +I + L I+L + G+
Sbjct: 71 --YVWATAIISHTEI-------DDINILEATKKACSIAVANLSLEPEIVLVD------GN 115
Query: 132 AEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRN 191
+F +FV D+L ++ ASIVAKVTRDR + E H+N
Sbjct: 116 ---------MQFKDERFVSIINGDNLSLSIAAASIVAKVTRDRLMLDLSAELPQYLWHKN 166
Query: 192 FGSGYPGDHKHI----IFGFPSLVRFSWGTC 218
SGY G +HI I G R S+ C
Sbjct: 167 --SGY-GTKEHIEAINIHGLSPYHRRSFRCC 194
>gi|94310391|ref|YP_583601.1| ribonuclease HII [Cupriavidus metallidurans CH34]
gi|189043647|sp|Q1LNE4.1|RNH2_RALME RecName: Full=Ribonuclease HII; Short=RNase HII
gi|93354243|gb|ABF08332.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Cupriavidus
metallidurans CH34]
Length = 226
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 64/224 (28%), Positives = 95/224 (42%), Gaps = 53/224 (23%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+ G+DEAGRGP+ GP+ + + Q ADSK L EKRE LF+ + + ++
Sbjct: 26 LCGVDEAGRGPLAGPVYAAAVVLNPARQ----IRGLADSKILSAEKREALFDRI-CDHAL 80
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNI---GILLTEVYLDTVGDA 132
GW + SA + + IN I H S + + V + G++ V +D
Sbjct: 81 GWHIA-------SASVEEIDSIN---ILHASMLAMQRAVQGLAASGVIPDLVQVD----- 125
Query: 133 EKYQAKLSQRFPSIKFVVSK--KADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHR 190
R P + F V K D+ +S ASI+AKV RDR L +H+
Sbjct: 126 -------GNRCPQVAFPVEAIVKGDAKVRAISAASILAKVARDRELL---------KLHQ 169
Query: 191 NFGSGYP--GDHKHIIFGFPSLVRFS----WGTCTSHFKDIVEV 228
YP G H FG+P+ F+ +G H + V
Sbjct: 170 E----YPEYGFDSH--FGYPTPQHFTALEQFGATPHHRRSFAPV 207
>gi|383481195|ref|YP_005390110.1| ribonuclease HII [Rickettsia rhipicephali str. 3-7-female6-CWPP]
gi|378933534|gb|AFC72037.1| ribonuclease HII [Rickettsia rhipicephali str. 3-7-female6-CWPP]
Length = 193
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 66/211 (31%), Positives = 94/211 (44%), Gaps = 36/211 (17%)
Query: 13 NPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVN 72
N + GIDEAGRGP+ GP+V + + T DSK L ++ RE L+E + N
Sbjct: 14 NCIVAGIDEAGRGPLAGPVVASAVIIDNANIIT----GIKDSKKLSKKTRELLYEQITSN 69
Query: 73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDS-AIGLITRVLNIGILLTEVYLDTVGD 131
WA II E+ + IN+ E + + +I + L I+L + G+
Sbjct: 70 --YVWATAIISHTEI-------DDINILEATKKACSIAVANLSLEPEIVLVD------GN 114
Query: 132 AEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRN 191
+F +FV D+L ++ ASIVAKVTRDR + E H+N
Sbjct: 115 ---------MQFKDERFVSIINGDNLSLSIAAASIVAKVTRDRLMLDLSAELPQYLWHKN 165
Query: 192 FGSGYPGDHKHI----IFGFPSLVRFSWGTC 218
SGY G +HI I G R S+ C
Sbjct: 166 --SGY-GTKEHIEAINIHGLSPYHRRSFRCC 193
>gi|320529141|ref|ZP_08030233.1| ribonuclease HII [Selenomonas artemidis F0399]
gi|320138771|gb|EFW30661.1| ribonuclease HII [Selenomonas artemidis F0399]
Length = 255
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 85/183 (46%), Gaps = 27/183 (14%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
+ G+DEAGRGP+ GP+ P Q L DSK L + R ELFE++ +
Sbjct: 71 LVAGVDEAGRGPLAGPVAVAAAILP----QELYLPRLNDSKKLSAKVRAELFEEI-TEKA 125
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
+ + V +ID E+ ++IN+ + + G+ V + EV +D V
Sbjct: 126 IAYHVTLIDAAEI-------DRINILQATRR---GMYEAVAALTPAPEEVLVDAV----- 170
Query: 135 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENM--HRNF 192
+L Q ++ ++ A S+ ++ ASI+AKVTRDR + + E H+ +
Sbjct: 171 ---ELPQLRMPVQSIIKGDAKSVS--IAAASILAKVTRDRLMERYDTEYPGYGFAGHKGY 225
Query: 193 GSG 195
G+
Sbjct: 226 GTA 228
>gi|303234893|ref|ZP_07321518.1| ribonuclease HII [Finegoldia magna BVS033A4]
gi|302494011|gb|EFL53792.1| ribonuclease HII [Finegoldia magna BVS033A4]
Length = 207
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 61/219 (27%), Positives = 102/219 (46%), Gaps = 32/219 (14%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDE GRGP+ GP+V + P + DSK L E+KR + F+D+ +N ++
Sbjct: 14 ICGIDEVGRGPLAGPVVTCAIIMP---KNCEIIDGVTDSKKLSEKKRIK-FKDMILNQAL 69
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
++V+ +D + ++IN+ + + S + + + L V DAE+
Sbjct: 70 AYSVNFVDQGVI-------DEINIKQATRLSMKRAVESLKTKDNKFIKPDL-IVIDAEEI 121
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLR--GWIFEETAENMHRNFG 193
+ Q + FV K + LYP +S ASIVAKV RD ++ I+ + H+ +G
Sbjct: 122 DTDIKQ----MSFV--KGDEKLYP-ISCASIVAKVIRDEYMKDMAVIYPQYGFEKHKGYG 174
Query: 194 SGYPGDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWES 232
+ H+ +I G C H K + L+E+
Sbjct: 175 TKL---HREMI--------LEHGECPLHRKTFLRKLYEN 202
>gi|260588681|ref|ZP_05854594.1| ribonuclease HII [Blautia hansenii DSM 20583]
gi|260541156|gb|EEX21725.1| ribonuclease HII [Blautia hansenii DSM 20583]
Length = 256
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 91/183 (49%), Gaps = 31/183 (16%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDE GRGP GP+V G + P + L DSK L E+ RE+L++++ + +V
Sbjct: 71 ICGIDEVGRGPFAGPVVAGAVILPPDCE----ILYVNDSKQLSEKMREQLYDEI-MEKAV 125
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRV-LNIGILLTE-VYLDTVGDAE 133
AV P+ + ++IN+ + ++++ ++++ + ILL + V + +
Sbjct: 126 SVAVGYASPQRI-------DEINILQATYEAMREAVSKLDVTPQILLNDAVTIPQIT--- 175
Query: 134 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW--IFEETAENMHRN 191
P + + K D+ ++ ASIVAKVTRDR +R + I E ++
Sbjct: 176 ---------IPQVPII---KGDAKSISIAAASIVAKVTRDRLMREYDKIMPEYGFASNKG 223
Query: 192 FGS 194
+GS
Sbjct: 224 YGS 226
>gi|325262275|ref|ZP_08129012.1| ribonuclease HII [Clostridium sp. D5]
gi|324032107|gb|EGB93385.1| ribonuclease HII [Clostridium sp. D5]
Length = 254
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 90/194 (46%), Gaps = 37/194 (19%)
Query: 9 KWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFED 68
K+ + I GIDE GRGP+ GP+V G + P + L DSK L +KREEL+++
Sbjct: 65 KYDEHTFICGIDEVGRGPLAGPVVAGAVILP----KDCEILYINDSKKLSAKKREELYDE 120
Query: 69 LKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDT 128
+ ++ +V + + P + +KIN+ + ++++ + + LL
Sbjct: 121 I-MDKAVATGIGMASPARI-------DKINILQATYEAMRIAVQELKTAPTLL------- 165
Query: 129 VGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDR-------TLRGWIF 181
+ DA + P I K D+ ++ ASI+AKVTRDR L G+ F
Sbjct: 166 LNDAVTIPGITLPQVPII------KGDAKSVSIAAASIIAKVTRDRLMLEYDKILPGYGF 219
Query: 182 EETAENMHRNFGSG 195
E ++ +GS
Sbjct: 220 AE-----NKGYGSA 228
>gi|308190329|ref|YP_003923260.1| ribonuclease H [Mycoplasma fermentans JER]
gi|319777726|ref|YP_004137377.1| ribonuclease [Mycoplasma fermentans M64]
gi|307625071|gb|ADN69376.1| ribonuclease H [Mycoplasma fermentans JER]
gi|318038801|gb|ADV35000.1| Ribonuclease [Mycoplasma fermentans M64]
Length = 198
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 85/178 (47%), Gaps = 25/178 (14%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I+G+DEAGRG GP+V GC+ P ++ L DSK L +++REE E + + +++
Sbjct: 15 IVGLDEAGRGCCAGPLVVGCVIMPQNFNHPL----IKDSKQLSQKQREEALE-IILENAI 69
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
II+ +E+ LN S IG+ R +N L T+ L + D EK
Sbjct: 70 ETVTTIINAQEVDQ---------LNP-KQASRIGM-QRCIN--KLNTKPEL-VITDFEKI 115
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG 193
P I V K D L V+ ASI+AKVTRD + G + N +N G
Sbjct: 116 N---DINIPQINLV---KGDQLSINVAAASILAKVTRDLIMVGIDKKFPMYNFKKNKG 167
>gi|418964780|ref|ZP_13516568.1| ribonuclease HII [Streptococcus constellatus subsp. constellatus
SK53]
gi|383344181|gb|EID22350.1| ribonuclease HII [Streptococcus constellatus subsp. constellatus
SK53]
Length = 260
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 86/180 (47%), Gaps = 26/180 (14%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDE GRGP+ GP+V + P + + LN DSK + ++K E +++++ + +V
Sbjct: 72 IAGIDEVGRGPLAGPVVAAAVILPKDSK--IKGLN--DSKKISKKKHETIYQEV-LKQAV 126
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
+ I D + + +++N+ E + + +I V N+ I + +D +
Sbjct: 127 AIGIGIKDNQVI-------DEVNIYEA---TKLAMIEAVRNLKITPQHLLIDAM------ 170
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 195
KL + P + K D+ ++ ASIVAKVTRDR + + + N G G
Sbjct: 171 --KLDLQIPQTSII---KGDANSLSIAAASIVAKVTRDRMMTDYDLTYPGYDFAHNVGYG 225
>gi|357419366|ref|YP_004932358.1| RNase HII [Thermovirga lienii DSM 17291]
gi|355396832|gb|AER66261.1| RNase HII [Thermovirga lienii DSM 17291]
Length = 186
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 91/210 (43%), Gaps = 33/210 (15%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
++G+DEAGRGP+ GP+V +Y + L +L DSK L ++RE LFE + +N V
Sbjct: 3 VVGVDEAGRGPLAGPVVAAAVYLENWQTRELLSLGLNDSKKLSPKRREALFEAV-LNMGV 61
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
W P A++ N +N + A V+ + + V +D
Sbjct: 62 CWRAQAASP----ARIDKYNILNATLWAMKRA------VVQLPLKPDLVVIDG------- 104
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW--IFEETAENMHRNFG 193
+ + K +V ADS P V+ ASI+AKV RDR + + +F + H+
Sbjct: 105 NMPIGLDLCTEKSIVG--ADSKVPSVAVASIIAKVLRDRAMVRFSRMFPQYGFERHK--- 159
Query: 194 SGYPGDHKHIIFGFPSLVRFSWGTCTSHFK 223
GYP + + G C H K
Sbjct: 160 -GYPTKEHYAVLR-------ELGPCKLHRK 181
>gi|251790731|ref|YP_003005452.1| ribonuclease HII [Dickeya zeae Ech1591]
gi|247539352|gb|ACT07973.1| Ribonuclease H [Dickeya zeae Ech1591]
Length = 198
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 83/186 (44%), Gaps = 31/186 (16%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
CI G+DE GRGP++G +V + + ADSKTL E++R L+++++ +
Sbjct: 12 CIAGVDEVGRGPLVGAVVTAAVIL----DPNRPIVGLADSKTLSEKRRLALYDEIR-EKA 66
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
+ W++ +P E+ LN I H + + + V + + V +D
Sbjct: 67 LAWSLGRAEPEEID---------TLN-ILHATMLAMQRAVAALPVTPDFVLID------- 109
Query: 135 YQAKLSQRFPSIKFVVSK--KADSLYPVVSGASIVAKVTRDRTLRGW--IFEETAENMHR 190
R P++ K DS +S ASI+AKVTRDR + F E H+
Sbjct: 110 -----GNRCPALPMPSQAVVKGDSRVAEISAASILAKVTRDREMEVLDRQFPEYGFAQHK 164
Query: 191 NFGSGY 196
+ + Y
Sbjct: 165 GYPTAY 170
>gi|343491942|ref|ZP_08730321.1| ribonuclease H II [Mycoplasma columbinum SF7]
gi|343128396|gb|EGV00198.1| ribonuclease H II [Mycoplasma columbinum SF7]
Length = 199
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 96/209 (45%), Gaps = 30/209 (14%)
Query: 10 WASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL 69
W I+G+DEAGRG GP+V + + + L+ DSK L +KREELF+ +
Sbjct: 9 WNEYDLILGLDEAGRGCCAGPLVVAGVI----FNKNYVNLDINDSKKLNSKKREELFKII 64
Query: 70 KVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRV-LNIGILLTEVYLDT 128
K D++ + + + D + N + S + + ++ + L +++T+
Sbjct: 65 K-RDALAYKIVVYDANYVDL-------FNPKQTSRNGMLKIVKEIELRPNLIITDF---- 112
Query: 129 VGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENM 188
K+ Q IK + K DS V+ ASI+AKV RD+ + + + N
Sbjct: 113 --------EKIDQ--TDIKQINLVKGDSKSISVAAASILAKVFRDQLMENYDQKYPQYNF 162
Query: 189 HRNFGSGYPGDHKHII--FGFPSLVRFSW 215
R+ G DH++++ FG + R ++
Sbjct: 163 KRHKGYA-TKDHQNVLEAFGPSPIHRLTY 190
>gi|71082816|ref|YP_265535.1| ribonuclease HII (RNase HII) [Candidatus Pelagibacter ubique
HTCC1062]
gi|97189139|sp|Q4FPF7.1|RNH2_PELUB RecName: Full=Ribonuclease HII; Short=RNase HII
gi|71061929|gb|AAZ20932.1| Ribonuclease HII (RNase HII) [Candidatus Pelagibacter ubique
HTCC1062]
Length = 186
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 92/195 (47%), Gaps = 40/195 (20%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
+ G+DE GRG ++GP+ + S + L DSKTL ++KREEL + +K N
Sbjct: 3 ILAGVDEVGRGSLIGPVYAAAVILNNSIDKKL----LKDSKTLTKDKREELEKYIKKNSI 58
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLD--TVGDA 132
WA+ +E+ KIN I H S + + +L + I + V +D + D
Sbjct: 59 --WAIGQASTKEIE-------KIN---ILHASLLAMKRAILKLKIKPSLVLIDGNKLPDL 106
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF 192
+ Y+ +++V+ K D P +S ASI+AKV+RD+ F N+
Sbjct: 107 KNYK---------LEYVI--KGDQKIPSISAASIIAKVSRDK------FITKLSKEFNNY 149
Query: 193 G----SGYPGDHKHI 203
G SGY G +H+
Sbjct: 150 GWDTNSGY-GTKEHL 163
>gi|347757971|ref|YP_004865533.1| ribonuclease HII family protein [Micavibrio aeruginosavorus ARL-13]
gi|347590489|gb|AEP09531.1| ribonuclease HII family protein [Micavibrio aeruginosavorus ARL-13]
Length = 239
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 84/181 (46%), Gaps = 23/181 (12%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+ G+DEAGRGP+ GP+V C+Y P + + DSK L +KR+ LF+ ++ +
Sbjct: 49 VCGLDEAGRGPLAGPVVAACVYVPPAARDLDFWAGVNDSKKLTAKKRDALFDLIQTHCIC 108
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
G A +D E+ + + ++ + D A G +L V +K
Sbjct: 109 GIAEASVD--EIDQMNILRASLHAMTKAFDMAGG------------QPGWLALVDGNQK- 153
Query: 136 QAKLSQRFP-SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGS 194
+ P +I+ VV K DS ++ ASI+AKVTRDR + + A +N G
Sbjct: 154 -----PKLPCTIQTVV--KGDSKSRSIAAASILAKVTRDRIMENLCTQYPAYGWSKNAGY 206
Query: 195 G 195
G
Sbjct: 207 G 207
>gi|171779427|ref|ZP_02920391.1| hypothetical protein STRINF_01272 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|171282044|gb|EDT47475.1| ribonuclease HII [Streptococcus infantarius subsp. infantarius ATCC
BAA-102]
Length = 262
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 85/193 (44%), Gaps = 39/193 (20%)
Query: 11 ASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLK 70
A I GIDE GRGP+ GP+V C+ P + + DSK + ++ EE++E++
Sbjct: 70 AGYEAIGGIDEVGRGPLAGPVVTACVILP----KNCKIKHLNDSKKIPKKHHEEIYEEV- 124
Query: 71 VNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIG--------ILLT 122
+ ++G + +ID N I+ I + +G++ + I +L+
Sbjct: 125 LARALGVGIGVID----------NNVIDDINIYEATKVGMLQAIDQIKGQVTKPDYLLID 174
Query: 123 EVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFE 182
++LDT P + K D+ ++ ASIVAKVTRDR + + E
Sbjct: 175 AMHLDT-------------DIPQQSLI---KGDANSLSIAAASIVAKVTRDRMMADYAKE 218
Query: 183 ETAENMHRNFGSG 195
+N G G
Sbjct: 219 YPGYAFEKNVGYG 231
>gi|422333344|ref|ZP_16414355.1| ribonuclease HII [Escherichia coli 4_1_47FAA]
gi|373245859|gb|EHP65324.1| ribonuclease HII [Escherichia coli 4_1_47FAA]
Length = 198
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 89/191 (46%), Gaps = 31/191 (16%)
Query: 10 WASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL 69
+ + G+DE GRGP++G +V + S + +A LN DSK L E++R L+E++
Sbjct: 6 YPHTQLVAGVDEVGRGPLVGAVVTAAVILDPS--RPIAGLN--DSKKLSEKRRLALYEEI 61
Query: 70 KVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 129
K ++ W++ +P E+ +++N I H + + + V + I V +D
Sbjct: 62 K-EKALSWSLGRAEPHEI-------DELN---ILHATMLAMQRAVAGLHIAPEYVLID-- 108
Query: 130 GDAEKYQAKLSQRFPSIKF--VVSKKADSLYPVVSGASIVAKVTRDRTLRGW--IFEETA 185
R P + + K DS P +S ASI+AKVTRD + +F +
Sbjct: 109 ----------GNRCPKLPMPAMAVVKGDSRVPEISAASILAKVTRDAEMAALDIVFPQYG 158
Query: 186 ENMHRNFGSGY 196
H+ + + +
Sbjct: 159 FAQHKGYPTAF 169
>gi|238810213|dbj|BAH70003.1| hypothetical protein [Mycoplasma fermentans PG18]
Length = 217
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 85/178 (47%), Gaps = 25/178 (14%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I+G+DEAGRG GP+V GC+ P ++ L DSK L +++REE E + + +++
Sbjct: 34 IVGLDEAGRGCCAGPLVVGCVIMPQNFNHPL----IKDSKQLSQKQREEALEII-LENAI 88
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
II+ +E+ LN S IG+ R +N L T+ L + D EK
Sbjct: 89 ETVTTIINAQEVD---------QLNP-KQASRIGM-QRCIN--KLNTKPEL-VITDFEKI 134
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG 193
P I V K D L V+ ASI+AKVTRD + G + N +N G
Sbjct: 135 N---DINIPQINLV---KGDQLSINVAAASILAKVTRDLIMVGIDKKFPMYNFKKNKG 186
>gi|340749929|ref|ZP_08686776.1| ribonuclease HII [Fusobacterium mortiferum ATCC 9817]
gi|229419572|gb|EEO34619.1| ribonuclease HII [Fusobacterium mortiferum ATCC 9817]
Length = 206
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 90/182 (49%), Gaps = 25/182 (13%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I+G+DEAGRGP+ G +V + Y + L +N DSK L E+KRE+LF+ + N V
Sbjct: 17 IIGVDEAGRGPLAGSVVAAAVKLK-RYSEELQEIN--DSKKLTEKKREKLFDIIMENFEV 73
Query: 76 GWAV-DIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
G + + + EL N +N ++ AI + + N +L V +D +
Sbjct: 74 GIGIASVQEIDEL-------NILNATFLAMRRAIEELDKKTNTDVL---VLVDGNFKIRE 123
Query: 135 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTL--RGWIFEETAENMHRNF 192
Y + ++ P I K D+ ++ ASI+AKVTRDR L G + E H+ +
Sbjct: 124 Y---IGKQEPII------KGDAKSLSIAAASIIAKVTRDRQLVEEGKKYPEYHFEKHKGY 174
Query: 193 GS 194
G+
Sbjct: 175 GT 176
>gi|78066784|ref|YP_369553.1| ribonuclease HII [Burkholderia sp. 383]
gi|97182346|sp|Q39F57.1|RNH2_BURS3 RecName: Full=Ribonuclease HII; Short=RNase HII
gi|77967529|gb|ABB08909.1| Ribonuclease H [Burkholderia sp. 383]
Length = 214
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 64/219 (29%), Positives = 100/219 (45%), Gaps = 46/219 (21%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+ G+DEAGRGP+ GP+V + Q + L+ DSK L +KR+ L+E L V S+
Sbjct: 28 VCGVDEAGRGPLAGPVVAAAVIL--DPAQPIDGLD--DSKALSAKKRDALYE-LIVARSL 82
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
+ V SA + ++I+ I H + + + V + +L T +D
Sbjct: 83 SYCV-------ASASV---DEIDTLNILHATMLAMKRAVEGLSVLPTLAQID-------- 124
Query: 136 QAKLSQRFPSIKF----VVSKKADSLYPVVSGASIVAKVTRDRTLRGWI--FEETAENMH 189
R P++ +VS D+L P +S ASI+AKVTRDR L F N+H
Sbjct: 125 ----GNRCPTLTVRAEAIVS--GDALVPSISAASILAKVTRDRMLVDLHERFPVYGFNVH 178
Query: 190 RNFGSGYPGDHKHIIFGFPSLVRFSWGTCTSHFKDIVEV 228
+G+ KH+ + +R G C +H + V
Sbjct: 179 AGYGTA-----KHL-----AALR-EHGPCEAHRRSFAPV 206
>gi|433462621|ref|ZP_20420198.1| ribonuclease HII [Halobacillus sp. BAB-2008]
gi|432188569|gb|ELK45750.1| ribonuclease HII [Halobacillus sp. BAB-2008]
Length = 254
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 83/189 (43%), Gaps = 29/189 (15%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
I GIDEAGRGP+ GP+V G + P + L L+ DSK L +KRE F ++ +
Sbjct: 72 AIAGIDEAGRGPLAGPVVAGAVILPEGF--YLEGLD--DSKKLSLKKREAFF--CRITEE 125
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
W V ++ E+ +++N I + + + V + + + +D
Sbjct: 126 ADWGVGVVSSEEI-------DRLN---IYQATKLAMKRAVEQLSVSPDHLLIDA------ 169
Query: 135 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGS 194
+ +P+ K D ++ AS++AKVTRDR + EE H
Sbjct: 170 ----MEIDYPACSQTSLVKGDQRSVSIAAASVIAKVTRDRYMAE--LEEAYPGYHFRSNQ 223
Query: 195 GYPGDHKHI 203
GY G +H+
Sbjct: 224 GY-GTSEHL 231
>gi|339443159|ref|YP_004709164.1| ribonuclease HII [Clostridium sp. SY8519]
gi|338902560|dbj|BAK48062.1| ribonuclease HII [Clostridium sp. SY8519]
Length = 254
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 87/194 (44%), Gaps = 35/194 (18%)
Query: 9 KWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFED 68
K+ I GIDEAGRGP+ GP+V G + P + L DSK L +REEL+
Sbjct: 67 KYEDYAMICGIDEAGRGPLAGPVVAGAVVLP----KDCRILYINDSKKLSPGRREELYAV 122
Query: 69 LKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAI-GLITR---VLNIGILLTEV 124
++ + W+V I+ P + N +N + AI GL +LN + + ++
Sbjct: 123 IQ-EQAAAWSVGIVGPERID----EVNILNATYEAMTQAIRGLSPEPDLLLNDAVTIPQI 177
Query: 125 YLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW--IFE 182
+ P + + K D+ + ASI+AKVTRDR + + ++
Sbjct: 178 DI-----------------PQVPII---KGDAKSISIGAASILAKVTRDRIMVEYDKVYP 217
Query: 183 ETAENMHRNFGSGY 196
E ++ +G+ +
Sbjct: 218 EYGFAQNKGYGAAF 231
>gi|449708101|gb|EMD47624.1| ribonuclease H2 subunit A, putative [Entamoeba histolytica KU27]
Length = 78
Score = 61.2 bits (147), Expect = 5e-07, Method: Composition-based stats.
Identities = 28/54 (51%), Positives = 37/54 (68%), Gaps = 2/54 (3%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLK 70
+GIDEAGRGPVLGPMVY + + + ++T+ F DSK L RE+LF D+K
Sbjct: 17 IGIDEAGRGPVLGPMVYSAFF--TTNTEVISTMGFHDSKILSRTMREKLFTDIK 68
>gi|253578396|ref|ZP_04855668.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251850714|gb|EES78672.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 251
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 88/185 (47%), Gaps = 30/185 (16%)
Query: 18 GIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGW 77
GIDE GRGP+ GP+V + P Q L DSK L KREEL+ D+ + ++V
Sbjct: 73 GIDEVGRGPLAGPVVACAVILP----QDSRILYLNDSKKLSASKREELY-DVIMREAVSV 127
Query: 78 AVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQA 137
+ + P + ++IN+ + ++++ ++++ + LL + DA
Sbjct: 128 GIGMRSPERI-------DEINILQATYEAMREAVSKLEVVPQLL-------LNDAVTIPQ 173
Query: 138 KLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW--IFEETAENMHRNFGSG 195
+ P I K D+ ++ ASIVAKVTRDR + + +F E ++ +GS
Sbjct: 174 ITIPQVPII------KGDAKSVSIAAASIVAKVTRDRMMEEYDKVFPEYGFASNKGYGS- 226
Query: 196 YPGDH 200
DH
Sbjct: 227 --ADH 229
>gi|189043611|sp|A7H722.2|RNH2_ANADF RecName: Full=Ribonuclease HII; Short=RNase HII
Length = 315
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 62/225 (27%), Positives = 94/225 (41%), Gaps = 53/225 (23%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+ G+DEAG P+ GP+V G P Y+ DSK L +RE L ED+K N +V
Sbjct: 80 VAGVDEAGMAPLAGPVVAGACILPRDYRPR----GIDDSKQLDRRERERLAEDIKAN-AV 134
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
WAV A++ +++N+ + + + +TR + LT + DA K
Sbjct: 135 CWAV-------ARAEVEEIDRLNI----YRAGLLALTRAVQA---LTPAPGHVLVDARKL 180
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 195
R P + D+L ++ ASI+AK TRD + +
Sbjct: 181 P---ELRLPQTPII---HGDALSLTIAAASILAKTTRD-------------ELMGELDAL 221
Query: 196 YPG----DHKHIIFGFPSLVRFS----WGTCTSH---FKDIVEVL 229
YPG +HK G+P+ F G C H F+ + E L
Sbjct: 222 YPGYGFCNHK----GYPTAEHFQALERLGACPIHRRSFQPVREAL 262
>gi|153003177|ref|YP_001377502.1| ribonuclease HII [Anaeromyxobacter sp. Fw109-5]
gi|152026750|gb|ABS24518.1| Ribonuclease H [Anaeromyxobacter sp. Fw109-5]
Length = 338
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 62/225 (27%), Positives = 94/225 (41%), Gaps = 53/225 (23%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+ G+DEAG P+ GP+V G P Y+ DSK L +RE L ED+K N +V
Sbjct: 103 VAGVDEAGMAPLAGPVVAGACILPRDYRPR----GIDDSKQLDRRERERLAEDIKAN-AV 157
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
WAV A++ +++N+ + + + +TR + LT + DA K
Sbjct: 158 CWAV-------ARAEVEEIDRLNI----YRAGLLALTRAVQA---LTPAPGHVLVDARKL 203
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 195
R P + D+L ++ ASI+AK TRD + +
Sbjct: 204 P---ELRLPQTPII---HGDALSLTIAAASILAKTTRD-------------ELMGELDAL 244
Query: 196 YPG----DHKHIIFGFPSLVRFS----WGTCTSH---FKDIVEVL 229
YPG +HK G+P+ F G C H F+ + E L
Sbjct: 245 YPGYGFCNHK----GYPTAEHFQALERLGACPIHRRSFQPVREAL 285
>gi|107028815|ref|YP_625910.1| ribonuclease HII [Burkholderia cenocepacia AU 1054]
gi|116690026|ref|YP_835649.1| ribonuclease HII [Burkholderia cenocepacia HI2424]
gi|122977720|sp|Q1BHG8.1|RNH2_BURCA RecName: Full=Ribonuclease HII; Short=RNase HII
gi|166225172|sp|A0K8C9.1|RNH2_BURCH RecName: Full=Ribonuclease HII; Short=RNase HII
gi|105897979|gb|ABF80937.1| Ribonuclease H [Burkholderia cenocepacia AU 1054]
gi|116648115|gb|ABK08756.1| Ribonuclease H [Burkholderia cenocepacia HI2424]
Length = 214
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 63/217 (29%), Positives = 97/217 (44%), Gaps = 42/217 (19%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+ G+DEAGRGP+ GP+V + Q + L+ DSK L +KR+ L+ DL V S
Sbjct: 28 VCGVDEAGRGPLAGPVVAAAVIL--DPAQPIDGLD--DSKVLSAKKRDALY-DLIVTRSH 82
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
+ V SA + ++I+ I H + + + V + +L T +D
Sbjct: 83 AYCV-------ASASV---DEIDTLNILHATMLAMKRAVEGLSVLPTLAQID-------- 124
Query: 136 QAKLSQRFP--SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI--FEETAENMHRN 191
R P S++ D+L P +S ASI+AKVTRDR L F N+H
Sbjct: 125 ----GNRCPTLSVRAEAIVSGDALVPSISAASILAKVTRDRMLVDLHERFPVYGFNVHAG 180
Query: 192 FGSGYPGDHKHIIFGFPSLVRFSWGTCTSHFKDIVEV 228
+G+ KH+ + +R G C +H + V
Sbjct: 181 YGTA-----KHL-----AALR-EHGPCEAHRRSFAPV 206
>gi|261822585|ref|YP_003260691.1| ribonuclease HII [Pectobacterium wasabiae WPP163]
gi|261606598|gb|ACX89084.1| Ribonuclease H [Pectobacterium wasabiae WPP163]
gi|385872899|gb|AFI91419.1| Ribonuclease HII [Pectobacterium sp. SCC3193]
Length = 198
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 78/164 (47%), Gaps = 29/164 (17%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
CI G+DE GRGP++G +V + T + ADSK L E++R L++++ +
Sbjct: 12 CIAGVDEVGRGPLVGAVVTAAVIL----DPTRPIVGLADSKKLSEKRRLALYDEIN-EKA 66
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
+ W++ +P E+ +++N I H + + + V + I+ V +D
Sbjct: 67 LAWSLGRAEPEEI-------DQLN---ILHATMLAMQRAVAGLSIVPDFVLID------- 109
Query: 135 YQAKLSQRFPSIKFVVSK--KADSLYPVVSGASIVAKVTRDRTL 176
R P++ K DS +S ASI+AKVTRDR +
Sbjct: 110 -----GNRCPALPMRAQAVVKGDSRVAEISAASIMAKVTRDREM 148
>gi|297569140|ref|YP_003690484.1| ribonuclease H [Desulfurivibrio alkaliphilus AHT2]
gi|296925055|gb|ADH85865.1| Ribonuclease H [Desulfurivibrio alkaliphilus AHT2]
Length = 218
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 63/222 (28%), Positives = 96/222 (43%), Gaps = 36/222 (16%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+ GIDEAGRGP+ GP+V C+ P + + F DSK LK E R L +++ V
Sbjct: 30 VAGIDEAGRGPLAGPVVAACVVLPAGCEAS----RFRDSKQLKPELRCRLAAEIEALPGV 85
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
W V ++ P E+ +++N+ + S L+ + L E V K+
Sbjct: 86 YWGVGVVAPAEI-------DRLNILQAS------LLAMQKAVAALAAEPDFLLVDG--KH 130
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 195
Q L P V + DS ++ ASI+AKV RD + + N HR+ G G
Sbjct: 131 QLPLP--LPQQALV---RGDSRSASIAAASIIAKVRRDEIMADYHRRYPQYNFHRHKGYG 185
Query: 196 YPGDHKHIIFGFPSLVRFSWGTCTSH---FKDIVEVLWESDE 234
+H H++ G C H FK + + L D+
Sbjct: 186 T-AEHLHLL--------RQHGPCPIHRRSFKPVGDCLRGGDD 218
>gi|170733361|ref|YP_001765308.1| ribonuclease HII [Burkholderia cenocepacia MC0-3]
gi|238688549|sp|B1JUD6.1|RNH2_BURCC RecName: Full=Ribonuclease HII; Short=RNase HII
gi|169816603|gb|ACA91186.1| Ribonuclease H [Burkholderia cenocepacia MC0-3]
Length = 214
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 63/217 (29%), Positives = 97/217 (44%), Gaps = 42/217 (19%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+ G+DEAGRGP+ GP+V + Q + L+ DSK L +KR+ L+ DL V S
Sbjct: 28 VCGVDEAGRGPLAGPVVAAAVIL--DPAQPIDGLD--DSKVLSAKKRDALY-DLIVTRSH 82
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
+ V SA + ++I+ I H + + + V + +L T +D
Sbjct: 83 AYCV-------ASASV---DEIDTLNILHATMLAMKRAVEGLSVLPTLAQID-------- 124
Query: 136 QAKLSQRFP--SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI--FEETAENMHRN 191
R P S++ D+L P +S ASI+AKVTRDR L F N+H
Sbjct: 125 ----GNRCPTLSVRAEAIVSGDALVPSISAASILAKVTRDRMLVDLHERFPVYGFNVHAG 180
Query: 192 FGSGYPGDHKHIIFGFPSLVRFSWGTCTSHFKDIVEV 228
+G+ KH+ + +R G C +H + V
Sbjct: 181 YGTA-----KHL-----AALR-EHGPCEAHRRSFAPV 206
>gi|254247897|ref|ZP_04941218.1| Ribonuclease HII [Burkholderia cenocepacia PC184]
gi|124872673|gb|EAY64389.1| Ribonuclease HII [Burkholderia cenocepacia PC184]
Length = 214
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 63/217 (29%), Positives = 97/217 (44%), Gaps = 42/217 (19%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+ G+DEAGRGP+ GP+V + Q + L+ DSK L +KR+ L+ DL V S
Sbjct: 28 VCGVDEAGRGPLAGPVVAAAVIL--DPAQPIDGLD--DSKVLSAKKRDALY-DLIVTRSH 82
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
+ V SA + ++I+ I H + + + V + +L T +D
Sbjct: 83 AYCV-------ASASV---DEIDTLNILHATMLAMKRAVEGLSVLPTLAQID-------- 124
Query: 136 QAKLSQRFP--SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI--FEETAENMHRN 191
R P S++ D+L P +S ASI+AKVTRDR L F N+H
Sbjct: 125 ----GNRCPTLSVRAEAIVSGDALVPSISAASILAKVTRDRMLVDLHERFPVYGFNVHAG 180
Query: 192 FGSGYPGDHKHIIFGFPSLVRFSWGTCTSHFKDIVEV 228
+G+ KH+ + +R G C +H + V
Sbjct: 181 YGTA-----KHL-----AALR-EHGPCEAHRRSFAPV 206
>gi|432677779|ref|ZP_19913209.1| ribonuclease HII [Escherichia coli KTE142]
gi|431207961|gb|ELF06191.1| ribonuclease HII [Escherichia coli KTE142]
Length = 198
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 89/191 (46%), Gaps = 31/191 (16%)
Query: 10 WASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL 69
+ + G+DE GRGP++G +V + + + +A LN DSK L E++R L+E++
Sbjct: 6 YPHTQLVAGVDEVGRGPLVGAVVTAAVILDPA--RPIAGLN--DSKKLSEKRRMALYEEI 61
Query: 70 KVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 129
K ++ W++ +P E+ +++N I H + + + V + I V +D
Sbjct: 62 K-EKALSWSLGRAEPHEI-------DELN---ILHATMLAMQRAVAGLHIAPEYVLID-- 108
Query: 130 GDAEKYQAKLSQRFPSIKF--VVSKKADSLYPVVSGASIVAKVTRDRTLRGW--IFEETA 185
R P + + K DS P +S ASI+AKVTRD + +F +
Sbjct: 109 ----------GNRCPKLPMPAMAVVKGDSRVPEISAASILAKVTRDAEMAALDIVFPQYG 158
Query: 186 ENMHRNFGSGY 196
H+ + + +
Sbjct: 159 FAQHKGYPTAF 169
>gi|430810424|ref|ZP_19437539.1| ribonuclease HII [Cupriavidus sp. HMR-1]
gi|429497115|gb|EKZ95658.1| ribonuclease HII [Cupriavidus sp. HMR-1]
Length = 226
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 64/224 (28%), Positives = 94/224 (41%), Gaps = 53/224 (23%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+ G+DEAGRGP+ GP+ + + Q ADSK L EKRE LF+ + ++
Sbjct: 26 LCGVDEAGRGPLAGPVYAAAVVLNPARQ----IRGLADSKILSAEKREALFDRI-CEHAL 80
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNI---GILLTEVYLDTVGDA 132
GW + SA + + IN I H S + + V + G++ V +D
Sbjct: 81 GWHIA-------SASVEEIDSIN---ILHASMLAMQRAVQGLAASGVIPDLVQVD----- 125
Query: 133 EKYQAKLSQRFPSIKFVVSK--KADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHR 190
R P + F V K D+ +S ASI+AKV RDR L +H+
Sbjct: 126 -------GNRCPQVAFPVEAIVKGDAKVRAISAASILAKVARDRELL---------KLHQ 169
Query: 191 NFGSGYP--GDHKHIIFGFPSLVRFS----WGTCTSHFKDIVEV 228
YP G H FG+P+ F+ +G H + V
Sbjct: 170 E----YPEYGFDSH--FGYPTPQHFTALEQFGATPHHRRSFAPV 207
>gi|189184531|ref|YP_001938316.1| ribonuclease HII [Orientia tsutsugamushi str. Ikeda]
gi|238692024|sp|B3CUN5.1|RNH2_ORITI RecName: Full=Ribonuclease HII; Short=RNase HII
gi|189181302|dbj|BAG41082.1| ribonuclease HII [Orientia tsutsugamushi str. Ikeda]
Length = 205
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 88/180 (48%), Gaps = 27/180 (15%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I G+DEAGRGP+ GP+V + Q++ + DSK L + KRE ++ K+ ++
Sbjct: 16 IAGVDEAGRGPLAGPVVAAAV----VVNQSIMIDDIKDSKVLSKSKRESCYD--KITNNY 69
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
+++ I +E+ +K N+ E + + I V N+ I+ T+V +D
Sbjct: 70 YYSIGIASVQEI-------DKYNILEAT---KLACIRAVKNLAIIPTKVLVDG------- 112
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 195
+ F +F+ + D + ++ ASIVAKVTRDR ++ E ++N G G
Sbjct: 113 ----NMNFTDNRFISIVRGDQICYSIASASIVAKVTRDRMMQILHQEYPVYGWNQNCGYG 168
>gi|419760893|ref|ZP_14287155.1| ribonuclease HII [Thermosipho africanus H17ap60334]
gi|407513984|gb|EKF48852.1| ribonuclease HII [Thermosipho africanus H17ap60334]
Length = 220
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 95/204 (46%), Gaps = 32/204 (15%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
+ G+DEAGRGP+ GP+V + + + L+ DSK L KRE+LF L++
Sbjct: 2 IVAGVDEAGRGPLFGPVVAAAVIL----NEEIDGLD--DSKKLTSRKREKLF--LEIIKK 53
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
+A+ I E+ N ++ EI+ D A+ + + ++ I +
Sbjct: 54 SYFAISIATADEID----KFNILHATEIAMDRALERLKKKIDFDIAFVD----------- 98
Query: 135 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGS 194
L+ +FP F K DSL +S ASI+AKV RDR + + + ++ + ++
Sbjct: 99 -GKNLNLKFP---FKCIVKGDSLVKEISAASILAKVVRDRIIVSYAKKFSSYMLEKH--K 152
Query: 195 GYPGD-HKHII--FGFPSLVRFSW 215
GYP H +I G L R ++
Sbjct: 153 GYPTQLHLKLIKEHGLTPLHRLTY 176
>gi|416050597|ref|ZP_11577006.1| ribonuclease HII [Aggregatibacter actinomycetemcomitans serotype e
str. SC1083]
gi|347993944|gb|EGY35268.1| ribonuclease HII [Aggregatibacter actinomycetemcomitans serotype e
str. SC1083]
Length = 199
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 84/188 (44%), Gaps = 36/188 (19%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
I G+DE GRGP++G +V + + ADSKTL E+KR L E++K +
Sbjct: 12 LIAGVDEVGRGPLVGAVVTAAVILDPQH----PVEGLADSKTLSEKKRLLLAEEIK-QKA 66
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
+ WA+ +P N+I+ I H S + + + ++ I V +D
Sbjct: 67 LAWALGRAEP----------NEIDELNILHASMLAMERAIKHLKIQPHFVLVD------- 109
Query: 135 YQAKLSQRFPSIKFVVSK---KADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRN 191
R P + ++ K D+L P +S ASI+AKV RD+ + E + H
Sbjct: 110 -----GNRIPPNLMIPAQAVVKGDALVPEISAASILAKVARDQEM----IELDKKYPHYE 160
Query: 192 FGS--GYP 197
F GYP
Sbjct: 161 FAKHRGYP 168
>gi|413916143|gb|AFW56075.1| hypothetical protein ZEAMMB73_446071 [Zea mays]
Length = 73
Score = 61.2 bits (147), Expect = 5e-07, Method: Composition-based stats.
Identities = 23/32 (71%), Positives = 26/32 (81%)
Query: 199 DHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLW 230
DHKH +FGFP+LVRFSWGTC FKD V+V W
Sbjct: 21 DHKHPVFGFPTLVRFSWGTCKPFFKDAVDVTW 52
>gi|343524950|ref|ZP_08761906.1| ribonuclease HII [Streptococcus constellatus subsp. pharyngis
SK1060 = CCUG 46377]
gi|343396822|gb|EGV09358.1| ribonuclease HII [Streptococcus constellatus subsp. pharyngis
SK1060 = CCUG 46377]
Length = 260
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 87/180 (48%), Gaps = 26/180 (14%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDE GRGP+ GP+V + P + + + LN DSK + ++K E +++++ + +V
Sbjct: 72 IAGIDEVGRGPLAGPVVAAAVILPKNSK--IKGLN--DSKKISKKKHETIYQEV-LKQAV 126
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
+ I D + + +++N+ E + + +I V N+ I + +D +
Sbjct: 127 AIGIGIKDNQVI-------DEVNIYEATK---LAMIEAVGNLKITPQHLLIDAM------ 170
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 195
KL + P + K D+ ++ ASIVAKVTRDR + + + N G G
Sbjct: 171 --KLDLQIPQTSII---KGDANSLSIAAASIVAKVTRDRMMTDYDLTYPGYDFAHNAGYG 225
>gi|153814000|ref|ZP_01966668.1| hypothetical protein RUMTOR_00207 [Ruminococcus torques ATCC 27756]
gi|317502410|ref|ZP_07960575.1| ribonuclease [Lachnospiraceae bacterium 8_1_57FAA]
gi|331088003|ref|ZP_08336926.1| hypothetical protein HMPREF1025_00509 [Lachnospiraceae bacterium
3_1_46FAA]
gi|145848396|gb|EDK25314.1| ribonuclease HII [Ruminococcus torques ATCC 27756]
gi|316896220|gb|EFV18326.1| ribonuclease [Lachnospiraceae bacterium 8_1_57FAA]
gi|330409314|gb|EGG88763.1| hypothetical protein HMPREF1025_00509 [Lachnospiraceae bacterium
3_1_46FAA]
Length = 255
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 89/188 (47%), Gaps = 27/188 (14%)
Query: 9 KWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFED 68
K+ I GIDEAGRGP+ GP+V G + P + L DSK L +RE L+++
Sbjct: 65 KYKDAEMICGIDEAGRGPLAGPVVAGAVILP----KDCEILYLNDSKKLSASRREALYDE 120
Query: 69 LKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDT 128
+ + +V V + P + ++IN+ + ++++ + ++ + LL
Sbjct: 121 I-MEKAVAVGVGMASPARI-------DEINILQATYEAMRKAVEQLSVVPDLL------- 165
Query: 129 VGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW--IFEETAE 186
+ DA ++ P + K D+ ++ AS++AKVTRDR + + I E
Sbjct: 166 LNDAVTIPEMPYRQVPIV------KGDAKSVSIAAASVIAKVTRDRLMMQYDKILPEYGF 219
Query: 187 NMHRNFGS 194
++ +GS
Sbjct: 220 AQNKGYGS 227
>gi|389792822|ref|ZP_10196004.1| ribonuclease HII [Rhodanobacter fulvus Jip2]
gi|388435686|gb|EIL92583.1| ribonuclease HII [Rhodanobacter fulvus Jip2]
Length = 219
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 95/215 (44%), Gaps = 37/215 (17%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+ G+DEAGRGP+ GP+ + S + + L+ DSK L E +RE L+ + + ++
Sbjct: 31 VAGVDEAGRGPLAGPLAVAAVILDPS--RPIKALD--DSKKLTEARREALYPQI-IERAL 85
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
W V M+ ++I+ I H + G+ V + ++ E ++D G+
Sbjct: 86 AWCV----------VMIEVDEIDRLNIFHATMAGMSRAVAGLSVVAQEAFID--GN---- 129
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 195
+L + P + D+ P +S ASI+AKV+RDR + E+ + +G
Sbjct: 130 --QLPRDLPCPGRAII-GGDARVPAISAASILAKVSRDRLMVAM------EDEYPGYGFA 180
Query: 196 YPGDHKHIIFGFPSLVRF--SWGTCTSHFKDIVEV 228
H +G PS + G C H + V
Sbjct: 181 I-----HKGYGTPSHLASLQQLGPCRQHRRSFAPV 210
>gi|393762668|ref|ZP_10351294.1| ribonuclease HII [Alishewanella agri BL06]
gi|392606290|gb|EIW89175.1| ribonuclease HII [Alishewanella agri BL06]
Length = 200
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 85/188 (45%), Gaps = 39/188 (20%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I G+DE GRGP++G +V + + L DSK L E+KR+ L E++K ++
Sbjct: 11 IAGVDEVGRGPLIGAVVTAAVILDPAQP----ILGLTDSKKLTEKKRQLLAEEIKAK-AL 65
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
WA+ +P E+ +++N I H + + + V + I V +D
Sbjct: 66 CWALGRAEPAEI-------DQLN---ILHATMLAMQRAVAALAIQPQWVLID-------- 107
Query: 136 QAKLSQRFPSIKFVVSK--KADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG 193
R P++ S K DSL +S ASI+AKV RD+ + + ++ FG
Sbjct: 108 ----GNRCPALAMPASAVVKGDSLVAEISAASILAKVARDQEMADL------DQLYPQFG 157
Query: 194 ----SGYP 197
GYP
Sbjct: 158 FAAHKGYP 165
>gi|424819593|ref|ZP_18244670.1| Ribonuclease HII [Candidatus Parvarchaeum acidophilus
ARMAN-5_'5-way FS']
gi|290558916|gb|EFD92304.1| ribonuclease HII [Candidatus Parvarchaeum acidophilus ARMAN-5]
gi|326422570|gb|EGD71965.1| Ribonuclease HII [Candidatus Parvarchaeum acidophilus
ARMAN-5_'5-way FS']
Length = 218
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 63/218 (28%), Positives = 96/218 (44%), Gaps = 27/218 (12%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVG 76
+GIDEAGRGPV+GPM+ + ++ DSK L KR L E +
Sbjct: 4 IGIDEAGRGPVIGPMIIAGVGINEDISNEFKSIGVKDSKLL-SIKRIYLLEREIKKSTQN 62
Query: 77 WAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQ 136
+ I E+ + K K NLN + DS + +I L+ +V +D+ K
Sbjct: 63 YKTIKISSEEIDNR-FEKGK-NLNYLELDS-MAVIANDLS----GEKVIIDSPSSNTKKI 115
Query: 137 AKLSQRFPSIKFVVSKK-ADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 195
+ Q K ++++ AD + VS ASI+AK R+R + ++ + +FGSG
Sbjct: 116 KEYLQNLIKRKIIIAENYADRNHVEVSAASILAKSEREREV-----DKIKKIFGYDFGSG 170
Query: 196 YPGDHKHIIF-------------GFPSLVRFSWGTCTS 220
YP D K + F + L+R SW T S
Sbjct: 171 YPSDPKTVEFLKIIKENGKIDESPYKELIRKSWSTLQS 208
>gi|260220952|emb|CBA29032.1| Ribonuclease HII [Curvibacter putative symbiont of Hydra
magnipapillata]
Length = 193
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 61/224 (27%), Positives = 93/224 (41%), Gaps = 42/224 (18%)
Query: 10 WASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL 69
W + G+DEAGRGP+ GP+V + + +A LN DSK L +RE+LF+++
Sbjct: 5 WDIPGLVAGVDEAGRGPLAGPVVAAAVIL--DDLRPIAGLN--DSKKLSAARREKLFDEI 60
Query: 70 KVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 129
+ + L + + ++EI+ A L R G+ L +
Sbjct: 61 RA-------------KALCCSIAQASVEEIDEINILQATLLAMRRAVEGLRLKPAKVLVD 107
Query: 130 GDAEKYQAKLSQRFPSIKFVVSK--KADSLYPVVSGASIVAKVTRDRTLRGWIFEETAEN 187
G+ R P + + K D+ P +S ASI+AKVTRDR W E A
Sbjct: 108 GN----------RLPVLDVLAEAIVKGDATVPAISAASILAKVTRDR----WCAELDARY 153
Query: 188 MHRNFGS--GYPGDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVL 229
F + GY G +H+ + G C H K V+
Sbjct: 154 PQYGFATHKGY-GTAEHLA------ALQTHGACPEHRKTFAPVI 190
>gi|387927053|ref|ZP_10129732.1| ribonuclease HII [Bacillus methanolicus PB1]
gi|387589197|gb|EIJ81517.1| ribonuclease HII [Bacillus methanolicus PB1]
Length = 259
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 83/185 (44%), Gaps = 36/185 (19%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I G+DE GRGP+ GP+V + P + DSK L + KREE + K+ S
Sbjct: 73 IAGVDEVGRGPLAGPVVAAAVILPSEFYLP----GIDDSKKLTKAKREEFY---KIISSS 125
Query: 76 GWAVDI--IDPRELSAKMLNKNKINLNEISHDSAIGLITRV-LNIGILLTEVYLDTVGDA 132
G A+ I ID E+ ++IN+NE + + + IT + N LL +
Sbjct: 126 GAAIGIGMIDHDEI-------DRININEAAKKAMLEAITNLETNPDCLLIDA-------- 170
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLR--GWIFEETAENMHR 190
KL +PS + K D ++ ASIVAKV RD ++ G +F +
Sbjct: 171 ----MKLDTPYPSESII---KGDGKSVSIAAASIVAKVVRDNYMKKLGLLF--PSYGFEN 221
Query: 191 NFGSG 195
N G G
Sbjct: 222 NMGYG 226
>gi|420145722|ref|ZP_14653177.1| Ribonuclease HII (RNase HII) [Lactobacillus coryniformis subsp.
coryniformis CECT 5711]
gi|398402622|gb|EJN55940.1| Ribonuclease HII (RNase HII) [Lactobacillus coryniformis subsp.
coryniformis CECT 5711]
Length = 252
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 79/170 (46%), Gaps = 26/170 (15%)
Query: 10 WASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL 69
W + P I GIDE GRGP+ GP+V + P + A + DSK L KR+ L+ +
Sbjct: 64 WPNYPQIAGIDEVGRGPLAGPVVTAAVILPHDF----AVYDVNDSKQLSATKRQLLYRQI 119
Query: 70 KVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 129
+ +V ++ + D ++ +++N+ E + + + + + + + +D V
Sbjct: 120 -LEQAVSVSIGVSD-------VVTIDRVNILEATK---LAMSQAIAGLSVPPDHLLIDAV 168
Query: 130 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW 179
KL+ P+I K DS ++ ASIVAKV RD + +
Sbjct: 169 --------KLNTDIPTISMF---KGDSHSISIAAASIVAKVVRDHLMLAY 207
>gi|386703381|ref|YP_006167228.1| Ribonuclease HII [Escherichia coli P12b]
gi|383101549|gb|AFG39058.1| Ribonuclease HII [Escherichia coli P12b]
Length = 198
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 89/183 (48%), Gaps = 27/183 (14%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+ G+DE GRGP++G +V + + +A LN DSK L E++R L E++K ++
Sbjct: 12 VAGVDEVGRGPLVGAVVTAAVIL--DPARPIAGLN--DSKKLSEKRRLALCEEIK-EKAL 66
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
W++ +P E+ +++N I H + + + V + I V +D
Sbjct: 67 SWSLGRAEPHEI-------DELN---ILHATMLAMQRAVAGLHIAPEYVLIDG-----NR 111
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLR--GWIFEETAENMHRNFG 193
KL PS+ V K DS P +S ASI+AKVTRD + G +F + H+ +
Sbjct: 112 CPKLP--MPSMAVV---KGDSRVPEISAASILAKVTRDAEMAALGIVFPQYGFAQHKGYP 166
Query: 194 SGY 196
+ +
Sbjct: 167 TAF 169
>gi|451936431|ref|YP_007460285.1| ribonuclease HII [Candidatus Kinetoplastibacterium oncopeltii
TCC290E]
gi|451777354|gb|AGF48329.1| ribonuclease HII [Candidatus Kinetoplastibacterium oncopeltii
TCC290E]
Length = 203
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 95/212 (44%), Gaps = 42/212 (19%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I G+DEAGRG + GP+ + + DSK L +KRE+L +K S+
Sbjct: 16 IAGVDEAGRGALAGPVYAAAVIL----DKRFPIEGLNDSKKLSPKKREDLSIIIK-QKSI 70
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
W+V I+ ++ NLN I + + + VL + +L V +D
Sbjct: 71 CWSVSSINVSDID---------NLN-ILQATLLAMKNAVLKLQVLPDIVLID-------- 112
Query: 136 QAKLSQRFPSIKFVVSK--KADSLYPVVSGASIVAKVTRDRTLRGWIFEETAE--NMHRN 191
+ P++K+ VS K DS P +S ASI+AK RD+ + ++ N H+
Sbjct: 113 ----GNQSPNLKYKVSTIVKGDSTIPAISAASIIAKTERDKEMLNLHYQYPCYLLNKHKG 168
Query: 192 FGSGYPGDHKHIIFGFPSLVRFSWGTCTSHFK 223
+G+ +HII L++ +G C H K
Sbjct: 169 YGT-----KEHII-----LLK-KYGPCKEHRK 189
>gi|254252072|ref|ZP_04945390.1| Ribonuclease H [Burkholderia dolosa AUO158]
gi|124894681|gb|EAY68561.1| Ribonuclease H [Burkholderia dolosa AUO158]
Length = 215
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 63/217 (29%), Positives = 100/217 (46%), Gaps = 42/217 (19%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+ G+DEAGRGP+ GP+V + + ++ + L+ DSK L +KR+ L+E L V S+
Sbjct: 29 VCGVDEAGRGPLAGPVVAAAVIL--NPERPIDGLD--DSKVLSAKKRDALYE-LIVERSL 83
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
+ V SA + ++I+ I H + + + V + IL T +D
Sbjct: 84 AYCV-------ASASV---DEIDTLNILHATMLAMKRAVEGLSILPTLAQID-------- 125
Query: 136 QAKLSQRFP--SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI--FEETAENMHRN 191
R P S++ D+L P +S ASI+AKVTRDR L F N+H
Sbjct: 126 ----GNRCPTLSVRAEAIVSGDALVPSISAASILAKVTRDRMLVDLHERFPVYGFNVHAG 181
Query: 192 FGSGYPGDHKHIIFGFPSLVRFSWGTCTSHFKDIVEV 228
+G+ KH+ + +R G C +H + V
Sbjct: 182 YGT-----EKHL-----AALR-EHGPCEAHRRSFAPV 207
>gi|16128176|ref|NP_414725.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Escherichia coli
str. K-12 substr. MG1655]
gi|74310803|ref|YP_309222.1| ribonuclease HII [Shigella sonnei Ss046]
gi|157157454|ref|YP_001461352.1| ribonuclease HII [Escherichia coli E24377A]
gi|157159648|ref|YP_001456966.1| ribonuclease HII [Escherichia coli HS]
gi|170079819|ref|YP_001729139.1| ribonuclease HII [Escherichia coli str. K-12 substr. DH10B]
gi|188492814|ref|ZP_03000084.1| ribonuclease HII [Escherichia coli 53638]
gi|191167029|ref|ZP_03028851.1| ribonuclease HII [Escherichia coli B7A]
gi|193063198|ref|ZP_03044289.1| ribonuclease HII [Escherichia coli E22]
gi|193067763|ref|ZP_03048730.1| ribonuclease HII [Escherichia coli E110019]
gi|194428257|ref|ZP_03060799.1| ribonuclease HII [Escherichia coli B171]
gi|209917373|ref|YP_002291457.1| ribonuclease HII [Escherichia coli SE11]
gi|218552764|ref|YP_002385677.1| ribonuclease HII [Escherichia coli IAI1]
gi|218693648|ref|YP_002401315.1| ribonuclease HII [Escherichia coli 55989]
gi|238899581|ref|YP_002925377.1| ribonuclease HII [Escherichia coli BW2952]
gi|260842415|ref|YP_003220193.1| ribonuclease HII [Escherichia coli O103:H2 str. 12009]
gi|260853393|ref|YP_003227284.1| ribonuclease HII [Escherichia coli O26:H11 str. 11368]
gi|260866332|ref|YP_003232734.1| ribonuclease HII [Escherichia coli O111:H- str. 11128]
gi|293476840|ref|ZP_06665248.1| ribonuclease HII [Escherichia coli B088]
gi|300816223|ref|ZP_07096446.1| ribonuclease HII [Escherichia coli MS 107-1]
gi|300824094|ref|ZP_07104214.1| ribonuclease HII [Escherichia coli MS 119-7]
gi|300923025|ref|ZP_07139092.1| ribonuclease HII [Escherichia coli MS 182-1]
gi|300949785|ref|ZP_07163759.1| ribonuclease HII [Escherichia coli MS 116-1]
gi|300956066|ref|ZP_07168391.1| ribonuclease HII [Escherichia coli MS 175-1]
gi|301028676|ref|ZP_07191897.1| ribonuclease HII [Escherichia coli MS 196-1]
gi|301330019|ref|ZP_07222703.1| ribonuclease HII [Escherichia coli MS 78-1]
gi|301646506|ref|ZP_07246381.1| ribonuclease HII [Escherichia coli MS 146-1]
gi|307311369|ref|ZP_07591011.1| Ribonuclease H [Escherichia coli W]
gi|331640637|ref|ZP_08341785.1| ribonuclease HII [Escherichia coli H736]
gi|331666424|ref|ZP_08367305.1| ribonuclease HII [Escherichia coli TA271]
gi|331680762|ref|ZP_08381421.1| ribonuclease HII [Escherichia coli H591]
gi|332282857|ref|ZP_08395270.1| ribonuclease HII degrades RNA of DNA-RNA hybrids [Shigella sp. D9]
gi|378714479|ref|YP_005279372.1| Ribonuclease H [Escherichia coli KO11FL]
gi|383176790|ref|YP_005454795.1| ribonuclease HII [Shigella sonnei 53G]
gi|386279226|ref|ZP_10056914.1| ribonuclease HII [Escherichia sp. 4_1_40B]
gi|386596925|ref|YP_006093325.1| Ribonuclease H [Escherichia coli DH1]
gi|386607484|ref|YP_006122970.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Escherichia coli
W]
gi|386612347|ref|YP_006132013.1| ribonuclease HII RnhB [Escherichia coli UMNK88]
gi|386698681|ref|YP_006162518.1| ribonuclease HII [Escherichia coli KO11FL]
gi|386707911|ref|YP_006171632.1| ribonuclease HII [Escherichia coli W]
gi|387619950|ref|YP_006127577.1| ribonuclease HII [Escherichia coli DH1]
gi|388476301|ref|YP_488485.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Escherichia coli
str. K-12 substr. W3110]
gi|404373495|ref|ZP_10978758.1| ribonuclease HII [Escherichia sp. 1_1_43]
gi|407467637|ref|YP_006785921.1| ribonuclease HII [Escherichia coli O104:H4 str. 2009EL-2071]
gi|407483646|ref|YP_006780795.1| ribonuclease HII [Escherichia coli O104:H4 str. 2011C-3493]
gi|410484186|ref|YP_006771732.1| ribonuclease HII [Escherichia coli O104:H4 str. 2009EL-2050]
gi|414574373|ref|ZP_11431588.1| ribonuclease HII [Shigella sonnei 3233-85]
gi|415777457|ref|ZP_11488686.1| ribonuclease HII family protein [Escherichia coli 3431]
gi|415780869|ref|ZP_11490656.1| ribonuclease HII family protein [Escherichia coli EPECa14]
gi|415801913|ref|ZP_11499804.1| ribonuclease HII family protein [Escherichia coli E128010]
gi|415814287|ref|ZP_11505907.1| ribonuclease HII family protein [Escherichia coli LT-68]
gi|415823997|ref|ZP_11512372.1| ribonuclease HII family protein [Escherichia coli OK1180]
gi|415832546|ref|ZP_11517973.1| ribonuclease HII family protein [Escherichia coli OK1357]
gi|415849997|ref|ZP_11527029.1| ribonuclease HII family protein [Shigella sonnei 53G]
gi|415877393|ref|ZP_11543570.1| ribonuclease HII [Escherichia coli MS 79-10]
gi|416342910|ref|ZP_11676914.1| Ribonuclease HII [Escherichia coli EC4100B]
gi|417132420|ref|ZP_11977205.1| ribonuclease HII [Escherichia coli 5.0588]
gi|417153265|ref|ZP_11992056.1| ribonuclease HII [Escherichia coli 96.0497]
gi|417168624|ref|ZP_12001075.1| ribonuclease HII [Escherichia coli 99.0741]
gi|417173964|ref|ZP_12003760.1| ribonuclease HII [Escherichia coli 3.2608]
gi|417182067|ref|ZP_12008903.1| ribonuclease HII [Escherichia coli 93.0624]
gi|417190741|ref|ZP_12013337.1| ribonuclease HII [Escherichia coli 4.0522]
gi|417216861|ref|ZP_12023533.1| ribonuclease HII [Escherichia coli JB1-95]
gi|417224034|ref|ZP_12027325.1| ribonuclease HII [Escherichia coli 96.154]
gi|417252979|ref|ZP_12044738.1| ribonuclease HII [Escherichia coli 4.0967]
gi|417270088|ref|ZP_12057448.1| ribonuclease HII [Escherichia coli 3.3884]
gi|417279572|ref|ZP_12066878.1| ribonuclease HII [Escherichia coli 3.2303]
gi|417293209|ref|ZP_12080489.1| ribonuclease HII [Escherichia coli B41]
gi|417295375|ref|ZP_12082628.1| ribonuclease HII [Escherichia coli 900105 (10e)]
gi|417579402|ref|ZP_12230228.1| ribonuclease HII family protein [Escherichia coli STEC_B2F1]
gi|417589804|ref|ZP_12240525.1| ribonuclease HII family protein [Escherichia coli 2534-86]
gi|417595033|ref|ZP_12245709.1| ribonuclease HII family protein [Escherichia coli 3030-1]
gi|417600446|ref|ZP_12251033.1| ribonuclease HII family protein [Escherichia coli STEC_94C]
gi|417611195|ref|ZP_12261671.1| ribonuclease HII family protein [Escherichia coli STEC_EH250]
gi|417621414|ref|ZP_12271745.1| ribonuclease HII family protein [Escherichia coli STEC_H.1.8]
gi|417632663|ref|ZP_12282886.1| ribonuclease HII family protein [Escherichia coli STEC_S1191]
gi|417665253|ref|ZP_12314822.1| ribonuclease HII family protein [Escherichia coli STEC_O31]
gi|417803523|ref|ZP_12450563.1| ribonuclease HII [Escherichia coli O104:H4 str. LB226692]
gi|417831285|ref|ZP_12477813.1| ribonuclease HII [Escherichia coli O104:H4 str. 01-09591]
gi|417864295|ref|ZP_12509341.1| hypothetical protein C22711_1228 [Escherichia coli O104:H4 str.
C227-11]
gi|417944171|ref|ZP_12587415.1| ribonuclease HII [Escherichia coli XH140A]
gi|417975907|ref|ZP_12616703.1| ribonuclease HII [Escherichia coli XH001]
gi|418039530|ref|ZP_12677792.1| Ribonuclease H [Escherichia coli W26]
gi|418261652|ref|ZP_12883607.1| ribonuclease HII family protein [Shigella sonnei str. Moseley]
gi|418945270|ref|ZP_13498154.1| ribonuclease HII [Escherichia coli O157:H43 str. T22]
gi|418959633|ref|ZP_13511531.1| Ribonuclease H [Escherichia coli J53]
gi|419140554|ref|ZP_13685313.1| ribonuclease HII [Escherichia coli DEC6A]
gi|419146256|ref|ZP_13690954.1| ribonuclease HII family protein [Escherichia coli DEC6B]
gi|419152025|ref|ZP_13696617.1| ribonuclease HII [Escherichia coli DEC6C]
gi|419157441|ref|ZP_13701972.1| ribonuclease HII [Escherichia coli DEC6D]
gi|419162447|ref|ZP_13706928.1| ribonuclease HII family protein [Escherichia coli DEC6E]
gi|419173528|ref|ZP_13717390.1| ribonuclease HII family protein [Escherichia coli DEC7B]
gi|419195142|ref|ZP_13738557.1| ribonuclease HII [Escherichia coli DEC8A]
gi|419201273|ref|ZP_13744505.1| ribonuclease HII family protein [Escherichia coli DEC8B]
gi|419207134|ref|ZP_13750265.1| ribonuclease HII family protein [Escherichia coli DEC8C]
gi|419213558|ref|ZP_13756593.1| ribonuclease HII family protein [Escherichia coli DEC8D]
gi|419219397|ref|ZP_13762358.1| ribonuclease HII family protein [Escherichia coli DEC8E]
gi|419224830|ref|ZP_13767725.1| ribonuclease HII family protein [Escherichia coli DEC9A]
gi|419230654|ref|ZP_13773450.1| ribonuclease HII family protein [Escherichia coli DEC9B]
gi|419235995|ref|ZP_13778748.1| ribonuclease HII family protein [Escherichia coli DEC9C]
gi|419241583|ref|ZP_13784235.1| ribonuclease HII family protein [Escherichia coli DEC9D]
gi|419246987|ref|ZP_13789606.1| ribonuclease HII family protein [Escherichia coli DEC9E]
gi|419252822|ref|ZP_13795374.1| ribonuclease HII family protein [Escherichia coli DEC10A]
gi|419258765|ref|ZP_13801229.1| ribonuclease HII family protein [Escherichia coli DEC10B]
gi|419264483|ref|ZP_13806873.1| ribonuclease HII family protein [Escherichia coli DEC10C]
gi|419270367|ref|ZP_13812702.1| ribonuclease HII family protein [Escherichia coli DEC10D]
gi|419276288|ref|ZP_13818560.1| ribonuclease HII family protein [Escherichia coli DEC10E]
gi|419281815|ref|ZP_13824040.1| ribonuclease HII family protein [Escherichia coli DEC10F]
gi|419287695|ref|ZP_13829814.1| ribonuclease HII family protein [Escherichia coli DEC11A]
gi|419292993|ref|ZP_13835055.1| ribonuclease HII family protein [Escherichia coli DEC11B]
gi|419298374|ref|ZP_13840399.1| ribonuclease HII [Escherichia coli DEC11C]
gi|419304691|ref|ZP_13846608.1| ribonuclease HII [Escherichia coli DEC11D]
gi|419309725|ref|ZP_13851604.1| ribonuclease HII [Escherichia coli DEC11E]
gi|419315028|ref|ZP_13856861.1| ribonuclease HII [Escherichia coli DEC12A]
gi|419320826|ref|ZP_13862571.1| ribonuclease HII family protein [Escherichia coli DEC12B]
gi|419327027|ref|ZP_13868664.1| ribonuclease HII [Escherichia coli DEC12C]
gi|419332444|ref|ZP_13874011.1| ribonuclease HII family protein [Escherichia coli DEC12D]
gi|419338197|ref|ZP_13879688.1| ribonuclease HII family protein [Escherichia coli DEC12E]
gi|419343851|ref|ZP_13885237.1| ribonuclease HII family protein [Escherichia coli DEC13A]
gi|419348272|ref|ZP_13889627.1| ribonuclease HII family protein [Escherichia coli DEC13B]
gi|419353175|ref|ZP_13894463.1| ribonuclease HII family protein [Escherichia coli DEC13C]
gi|419358520|ref|ZP_13899752.1| ribonuclease HII family protein [Escherichia coli DEC13D]
gi|419363489|ref|ZP_13904673.1| ribonuclease HII family protein [Escherichia coli DEC13E]
gi|419368463|ref|ZP_13909597.1| ribonuclease HII [Escherichia coli DEC14A]
gi|419373621|ref|ZP_13914683.1| ribonuclease HII family protein [Escherichia coli DEC14B]
gi|419379046|ref|ZP_13920029.1| ribonuclease HII family protein [Escherichia coli DEC14C]
gi|419384304|ref|ZP_13925212.1| ribonuclease HII family protein [Escherichia coli DEC14D]
gi|419389599|ref|ZP_13930442.1| ribonuclease HII family protein [Escherichia coli DEC15A]
gi|419394770|ref|ZP_13935558.1| ribonuclease HII family protein [Escherichia coli DEC15B]
gi|419400163|ref|ZP_13940898.1| ribonuclease HII family protein [Escherichia coli DEC15C]
gi|419410494|ref|ZP_13951173.1| ribonuclease HII family protein [Escherichia coli DEC15D]
gi|419410812|ref|ZP_13951489.1| ribonuclease HII family protein [Escherichia coli DEC15E]
gi|419804924|ref|ZP_14330073.1| Ribonuclease H [Escherichia coli AI27]
gi|419812913|ref|ZP_14337773.1| ribonuclease HII [Escherichia coli O32:H37 str. P4]
gi|419865193|ref|ZP_14387582.1| ribonuclease HII [Escherichia coli O103:H25 str. CVM9340]
gi|419870138|ref|ZP_14392275.1| ribonuclease HII [Escherichia coli O103:H2 str. CVM9450]
gi|419875686|ref|ZP_14397511.1| ribonuclease HII [Escherichia coli O111:H11 str. CVM9534]
gi|419880127|ref|ZP_14401536.1| ribonuclease HII [Escherichia coli O111:H11 str. CVM9545]
gi|419891800|ref|ZP_14411841.1| ribonuclease HII [Escherichia coli O111:H8 str. CVM9570]
gi|419893462|ref|ZP_14413446.1| ribonuclease HII [Escherichia coli O111:H8 str. CVM9574]
gi|419904672|ref|ZP_14423663.1| ribonuclease HII [Escherichia coli O26:H11 str. CVM9942]
gi|419906029|ref|ZP_14424963.1| Ribonuclease H [Escherichia coli O26:H11 str. CVM10026]
gi|419921781|ref|ZP_14439817.1| ribonuclease HII [Escherichia coli 541-15]
gi|419929355|ref|ZP_14447030.1| ribonuclease HII [Escherichia coli 541-1]
gi|419937843|ref|ZP_14454689.1| ribonuclease HII [Escherichia coli 75]
gi|419951503|ref|ZP_14467694.1| ribonuclease HII [Escherichia coli CUMT8]
gi|420087292|ref|ZP_14599263.1| ribonuclease HII [Escherichia coli O111:H8 str. CVM9602]
gi|420092429|ref|ZP_14604131.1| ribonuclease HII [Escherichia coli O111:H8 str. CVM9634]
gi|420100320|ref|ZP_14611500.1| ribonuclease HII [Escherichia coli O111:H11 str. CVM9455]
gi|420105932|ref|ZP_14616364.1| ribonuclease HII [Escherichia coli O111:H11 str. CVM9553]
gi|420113064|ref|ZP_14622829.1| ribonuclease HII [Escherichia coli O26:H11 str. CVM10021]
gi|420119508|ref|ZP_14628784.1| ribonuclease HII [Escherichia coli O26:H11 str. CVM10030]
gi|420125515|ref|ZP_14634317.1| ribonuclease HII [Escherichia coli O26:H11 str. CVM10224]
gi|420132846|ref|ZP_14641149.1| ribonuclease HII [Escherichia coli O26:H11 str. CVM9952]
gi|420356758|ref|ZP_14857783.1| ribonuclease HII [Shigella sonnei 3226-85]
gi|420361773|ref|ZP_14862705.1| ribonuclease HII family protein [Shigella sonnei 4822-66]
gi|420389515|ref|ZP_14888789.1| ribonuclease HII family protein [Escherichia coli EPEC C342-62]
gi|421775113|ref|ZP_16211723.1| Ribonuclease H [Escherichia coli AD30]
gi|422354184|ref|ZP_16434926.1| ribonuclease HII [Escherichia coli MS 117-3]
gi|422761860|ref|ZP_16815618.1| ribonuclease HII [Escherichia coli E1167]
gi|422772894|ref|ZP_16826580.1| ribonuclease HII [Escherichia coli E482]
gi|422776823|ref|ZP_16830477.1| ribonuclease HII [Escherichia coli H120]
gi|422792834|ref|ZP_16845533.1| ribonuclease HII [Escherichia coli TA007]
gi|422816199|ref|ZP_16864414.1| ribonuclease HII [Escherichia coli M919]
gi|422834473|ref|ZP_16882535.1| ribonuclease HII [Escherichia coli E101]
gi|422990886|ref|ZP_16981657.1| ribonuclease HII [Escherichia coli O104:H4 str. C227-11]
gi|422992826|ref|ZP_16983590.1| ribonuclease HII [Escherichia coli O104:H4 str. C236-11]
gi|422998035|ref|ZP_16988791.1| ribonuclease HII [Escherichia coli O104:H4 str. 09-7901]
gi|423006519|ref|ZP_16997263.1| ribonuclease HII [Escherichia coli O104:H4 str. 04-8351]
gi|423008141|ref|ZP_16998879.1| ribonuclease HII [Escherichia coli O104:H4 str. 11-3677]
gi|423022327|ref|ZP_17013030.1| ribonuclease HII [Escherichia coli O104:H4 str. 11-4404]
gi|423027482|ref|ZP_17018175.1| ribonuclease HII [Escherichia coli O104:H4 str. 11-4522]
gi|423033319|ref|ZP_17024003.1| ribonuclease HII [Escherichia coli O104:H4 str. 11-4623]
gi|423036185|ref|ZP_17026859.1| ribonuclease HII [Escherichia coli O104:H4 str. 11-4632 C1]
gi|423041305|ref|ZP_17031972.1| ribonuclease HII [Escherichia coli O104:H4 str. 11-4632 C2]
gi|423047991|ref|ZP_17038648.1| ribonuclease HII [Escherichia coli O104:H4 str. 11-4632 C3]
gi|423056529|ref|ZP_17045334.1| ribonuclease HII [Escherichia coli O104:H4 str. 11-4632 C4]
gi|423058540|ref|ZP_17047336.1| ribonuclease HII [Escherichia coli O104:H4 str. 11-4632 C5]
gi|423700965|ref|ZP_17675424.1| ribonuclease HII [Escherichia coli H730]
gi|423709904|ref|ZP_17684258.1| ribonuclease HII [Escherichia coli B799]
gi|424746723|ref|ZP_18174945.1| ribonuclease HII [Escherichia coli O26:H11 str. CFSAN001629]
gi|424756638|ref|ZP_18184444.1| ribonuclease HII [Escherichia coli O111:H11 str. CFSAN001630]
gi|424774786|ref|ZP_18201796.1| ribonuclease HII [Escherichia coli O111:H8 str. CFSAN001632]
gi|425113504|ref|ZP_18515359.1| ribonuclease HII [Escherichia coli 8.0566]
gi|425118256|ref|ZP_18520010.1| ribonuclease HII [Escherichia coli 8.0569]
gi|425270893|ref|ZP_18662418.1| ribonuclease HII [Escherichia coli TW15901]
gi|425281516|ref|ZP_18672647.1| ribonuclease HII [Escherichia coli TW00353]
gi|425376924|ref|ZP_18761356.1| ribonuclease HII [Escherichia coli EC1865]
gi|425420783|ref|ZP_18802027.1| ribonuclease HII [Escherichia coli 0.1288]
gi|429722384|ref|ZP_19257283.1| ribonuclease HII [Escherichia coli O104:H4 str. Ec11-9450]
gi|429774462|ref|ZP_19306466.1| ribonuclease HII [Escherichia coli O104:H4 str. 11-02030]
gi|429779722|ref|ZP_19311678.1| ribonuclease HII [Escherichia coli O104:H4 str. 11-02033-1]
gi|429783777|ref|ZP_19315691.1| ribonuclease HII [Escherichia coli O104:H4 str. 11-02092]
gi|429789115|ref|ZP_19320991.1| ribonuclease HII [Escherichia coli O104:H4 str. 11-02093]
gi|429795345|ref|ZP_19327172.1| ribonuclease HII [Escherichia coli O104:H4 str. 11-02281]
gi|429801271|ref|ZP_19333050.1| ribonuclease HII [Escherichia coli O104:H4 str. 11-02318]
gi|429804903|ref|ZP_19336651.1| ribonuclease HII [Escherichia coli O104:H4 str. 11-02913]
gi|429809714|ref|ZP_19341417.1| ribonuclease HII [Escherichia coli O104:H4 str. 11-03439]
gi|429815474|ref|ZP_19347134.1| ribonuclease HII [Escherichia coli O104:H4 str. 11-04080]
gi|429820685|ref|ZP_19352300.1| ribonuclease HII [Escherichia coli O104:H4 str. 11-03943]
gi|429906736|ref|ZP_19372706.1| ribonuclease HII [Escherichia coli O104:H4 str. Ec11-9990]
gi|429910931|ref|ZP_19376888.1| ribonuclease HII [Escherichia coli O104:H4 str. Ec11-9941]
gi|429916771|ref|ZP_19382712.1| ribonuclease HII [Escherichia coli O104:H4 str. Ec11-4984]
gi|429921809|ref|ZP_19387731.1| ribonuclease HII [Escherichia coli O104:H4 str. Ec11-5604]
gi|429927626|ref|ZP_19393533.1| ribonuclease HII [Escherichia coli O104:H4 str. Ec11-4986]
gi|429931559|ref|ZP_19397455.1| ribonuclease HII [Escherichia coli O104:H4 str. Ec11-4987]
gi|429938102|ref|ZP_19403983.1| ribonuclease HII [Escherichia coli O104:H4 str. Ec11-4988]
gi|429938817|ref|ZP_19404691.1| ribonuclease HII [Escherichia coli O104:H4 str. Ec11-5603]
gi|429946458|ref|ZP_19412314.1| ribonuclease HII [Escherichia coli O104:H4 str. Ec11-6006]
gi|429949106|ref|ZP_19414954.1| ribonuclease HII [Escherichia coli O104:H4 str. Ec12-0465]
gi|429957373|ref|ZP_19423202.1| ribonuclease HII [Escherichia coli O104:H4 str. Ec12-0466]
gi|432368175|ref|ZP_19611283.1| ribonuclease HII [Escherichia coli KTE10]
gi|432379799|ref|ZP_19622774.1| ribonuclease HII [Escherichia coli KTE12]
gi|432415135|ref|ZP_19657770.1| ribonuclease HII [Escherichia coli KTE44]
gi|432483825|ref|ZP_19725754.1| ribonuclease HII [Escherichia coli KTE212]
gi|432562104|ref|ZP_19798737.1| ribonuclease HII [Escherichia coli KTE51]
gi|432578896|ref|ZP_19815332.1| ribonuclease HII [Escherichia coli KTE56]
gi|432625742|ref|ZP_19861731.1| ribonuclease HII [Escherichia coli KTE77]
gi|432635502|ref|ZP_19871392.1| ribonuclease HII [Escherichia coli KTE81]
gi|432659450|ref|ZP_19895115.1| ribonuclease HII [Escherichia coli KTE111]
gi|432669005|ref|ZP_19904560.1| ribonuclease HII [Escherichia coli KTE119]
gi|432684063|ref|ZP_19919386.1| ribonuclease HII [Escherichia coli KTE156]
gi|432689967|ref|ZP_19925221.1| ribonuclease HII [Escherichia coli KTE161]
gi|432702726|ref|ZP_19937858.1| ribonuclease HII [Escherichia coli KTE171]
gi|432735647|ref|ZP_19970439.1| ribonuclease HII [Escherichia coli KTE42]
gi|432753009|ref|ZP_19987580.1| ribonuclease HII [Escherichia coli KTE29]
gi|432763466|ref|ZP_19997923.1| ribonuclease HII [Escherichia coli KTE48]
gi|432808816|ref|ZP_20042726.1| ribonuclease HII [Escherichia coli KTE91]
gi|432812333|ref|ZP_20046183.1| ribonuclease HII [Escherichia coli KTE101]
gi|432833284|ref|ZP_20066833.1| ribonuclease HII [Escherichia coli KTE136]
gi|432879439|ref|ZP_20096466.1| ribonuclease HII [Escherichia coli KTE154]
gi|432932443|ref|ZP_20132345.1| ribonuclease HII [Escherichia coli KTE184]
gi|432952840|ref|ZP_20145583.1| ribonuclease HII [Escherichia coli KTE197]
gi|432966324|ref|ZP_20155244.1| ribonuclease HII [Escherichia coli KTE203]
gi|433046233|ref|ZP_20233677.1| ribonuclease HII [Escherichia coli KTE120]
gi|433090530|ref|ZP_20276843.1| ribonuclease HII [Escherichia coli KTE138]
gi|433171949|ref|ZP_20356519.1| ribonuclease HII [Escherichia coli KTE232]
gi|433191972|ref|ZP_20376005.1| ribonuclease HII [Escherichia coli KTE90]
gi|442590826|ref|ZP_21009581.1| Ribonuclease HII [Escherichia coli O10:K5(L):H4 str. ATCC 23506]
gi|450209556|ref|ZP_21893971.1| ribonuclease HII [Escherichia coli O08]
gi|450238451|ref|ZP_21898879.1| ribonuclease HII [Escherichia coli S17]
gi|2507334|sp|P10442.2|RNH2_ECOLI RecName: Full=Ribonuclease HII; Short=RNase HII
gi|97189278|sp|Q3Z5H5.1|RNH2_SHISS RecName: Full=Ribonuclease HII; Short=RNase HII
gi|166991065|sp|A7ZHS3.1|RNH2_ECO24 RecName: Full=Ribonuclease HII; Short=RNase HII
gi|166991066|sp|A7ZWC9.1|RNH2_ECOHS RecName: Full=Ribonuclease HII; Short=RNase HII
gi|226736819|sp|B7M1Y6.1|RNH2_ECO8A RecName: Full=Ribonuclease HII; Short=RNase HII
gi|229564284|sp|B1XD52.1|RNH2_ECODH RecName: Full=Ribonuclease HII; Short=RNase HII
gi|238056777|sp|B6HZF7.1|RNH2_ECOSE RecName: Full=Ribonuclease HII; Short=RNase HII
gi|254807975|sp|B7LGP5.1|RNH2_ECO55 RecName: Full=Ribonuclease HII; Short=RNase HII
gi|259494063|sp|C4ZRS5.1|RNH2_ECOBW RecName: Full=Ribonuclease HII; Short=RNase HII
gi|1552760|gb|AAB08612.1| ribonuclease HII [Escherichia coli]
gi|1786380|gb|AAC73294.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Escherichia coli
str. K-12 substr. MG1655]
gi|73854280|gb|AAZ86987.1| RNAse HII [Shigella sonnei Ss046]
gi|85674372|dbj|BAA77858.2| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Escherichia coli
str. K12 substr. W3110]
gi|157065328|gb|ABV04583.1| ribonuclease HII [Escherichia coli HS]
gi|157079484|gb|ABV19192.1| ribonuclease HII [Escherichia coli E24377A]
gi|169887654|gb|ACB01361.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Escherichia coli
str. K-12 substr. DH10B]
gi|188488013|gb|EDU63116.1| ribonuclease HII [Escherichia coli 53638]
gi|190902922|gb|EDV62649.1| ribonuclease HII [Escherichia coli B7A]
gi|192931106|gb|EDV83709.1| ribonuclease HII [Escherichia coli E22]
gi|192959175|gb|EDV89611.1| ribonuclease HII [Escherichia coli E110019]
gi|194413632|gb|EDX29912.1| ribonuclease HII [Escherichia coli B171]
gi|209910632|dbj|BAG75706.1| ribonuclease HII [Escherichia coli SE11]
gi|218350380|emb|CAU96063.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Escherichia coli
55989]
gi|218359532|emb|CAQ97070.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Escherichia coli
IAI1]
gi|226840708|gb|EEH72710.1| ribonuclease HII [Escherichia sp. 1_1_43]
gi|238863470|gb|ACR65468.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Escherichia coli
BW2952]
gi|257752042|dbj|BAI23544.1| ribonuclease HII [Escherichia coli O26:H11 str. 11368]
gi|257757562|dbj|BAI29059.1| ribonuclease HII [Escherichia coli O103:H2 str. 12009]
gi|257762688|dbj|BAI34183.1| ribonuclease HII [Escherichia coli O111:H- str. 11128]
gi|260450614|gb|ACX41036.1| Ribonuclease H [Escherichia coli DH1]
gi|291321293|gb|EFE60735.1| ribonuclease HII [Escherichia coli B088]
gi|299878308|gb|EFI86519.1| ribonuclease HII [Escherichia coli MS 196-1]
gi|300317096|gb|EFJ66880.1| ribonuclease HII [Escherichia coli MS 175-1]
gi|300420652|gb|EFK03963.1| ribonuclease HII [Escherichia coli MS 182-1]
gi|300450817|gb|EFK14437.1| ribonuclease HII [Escherichia coli MS 116-1]
gi|300523371|gb|EFK44440.1| ribonuclease HII [Escherichia coli MS 119-7]
gi|300531430|gb|EFK52492.1| ribonuclease HII [Escherichia coli MS 107-1]
gi|300843930|gb|EFK71690.1| ribonuclease HII [Escherichia coli MS 78-1]
gi|301075292|gb|EFK90098.1| ribonuclease HII [Escherichia coli MS 146-1]
gi|306908348|gb|EFN38846.1| Ribonuclease H [Escherichia coli W]
gi|315059401|gb|ADT73728.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Escherichia coli
W]
gi|315134873|dbj|BAJ42032.1| ribonuclease HII [Escherichia coli DH1]
gi|315616332|gb|EFU96950.1| ribonuclease HII family protein [Escherichia coli 3431]
gi|320200291|gb|EFW74877.1| Ribonuclease HII [Escherichia coli EC4100B]
gi|323157980|gb|EFZ44082.1| ribonuclease HII family protein [Escherichia coli EPECa14]
gi|323160197|gb|EFZ46156.1| ribonuclease HII family protein [Escherichia coli E128010]
gi|323165884|gb|EFZ51666.1| ribonuclease HII family protein [Shigella sonnei 53G]
gi|323170975|gb|EFZ56624.1| ribonuclease HII family protein [Escherichia coli LT-68]
gi|323176498|gb|EFZ62090.1| ribonuclease HII family protein [Escherichia coli OK1180]
gi|323181691|gb|EFZ67105.1| ribonuclease HII family protein [Escherichia coli OK1357]
gi|323380040|gb|ADX52308.1| Ribonuclease H [Escherichia coli KO11FL]
gi|323939941|gb|EGB36139.1| ribonuclease HII [Escherichia coli E482]
gi|323945660|gb|EGB41709.1| ribonuclease HII [Escherichia coli H120]
gi|323970662|gb|EGB65918.1| ribonuclease HII [Escherichia coli TA007]
gi|324017810|gb|EGB87029.1| ribonuclease HII [Escherichia coli MS 117-3]
gi|324118303|gb|EGC12198.1| ribonuclease HII [Escherichia coli E1167]
gi|331040383|gb|EGI12590.1| ribonuclease HII [Escherichia coli H736]
gi|331066635|gb|EGI38512.1| ribonuclease HII [Escherichia coli TA271]
gi|331072225|gb|EGI43561.1| ribonuclease HII [Escherichia coli H591]
gi|332105209|gb|EGJ08555.1| ribonuclease HII degrades RNA of DNA-RNA hybrids [Shigella sp. D9]
gi|332341516|gb|AEE54850.1| ribonuclease HII RnhB [Escherichia coli UMNK88]
gi|340736154|gb|EGR65204.1| ribonuclease HII [Escherichia coli O104:H4 str. 01-09591]
gi|340742069|gb|EGR76210.1| ribonuclease HII [Escherichia coli O104:H4 str. LB226692]
gi|341917584|gb|EGT67199.1| hypothetical protein C22711_1228 [Escherichia coli O104:H4 str.
C227-11]
gi|342363999|gb|EGU28102.1| ribonuclease HII [Escherichia coli XH140A]
gi|342928028|gb|EGU96750.1| ribonuclease HII [Escherichia coli MS 79-10]
gi|344194305|gb|EGV48379.1| ribonuclease HII [Escherichia coli XH001]
gi|345344700|gb|EGW77065.1| ribonuclease HII family protein [Escherichia coli STEC_B2F1]
gi|345346162|gb|EGW78498.1| ribonuclease HII family protein [Escherichia coli 2534-86]
gi|345354604|gb|EGW86825.1| ribonuclease HII family protein [Escherichia coli STEC_94C]
gi|345363245|gb|EGW95388.1| ribonuclease HII family protein [Escherichia coli 3030-1]
gi|345367169|gb|EGW99256.1| ribonuclease HII family protein [Escherichia coli STEC_EH250]
gi|345387176|gb|EGX17004.1| ribonuclease HII family protein [Escherichia coli STEC_H.1.8]
gi|345391460|gb|EGX21250.1| ribonuclease HII family protein [Escherichia coli STEC_S1191]
gi|354859385|gb|EHF19833.1| ribonuclease HII [Escherichia coli O104:H4 str. 04-8351]
gi|354859872|gb|EHF20319.1| ribonuclease HII [Escherichia coli O104:H4 str. C227-11]
gi|354866569|gb|EHF26992.1| ribonuclease HII [Escherichia coli O104:H4 str. C236-11]
gi|354876903|gb|EHF37263.1| ribonuclease HII [Escherichia coli O104:H4 str. 09-7901]
gi|354881912|gb|EHF42240.1| ribonuclease HII [Escherichia coli O104:H4 str. 11-4404]
gi|354885010|gb|EHF45321.1| ribonuclease HII [Escherichia coli O104:H4 str. 11-3677]
gi|354886457|gb|EHF46744.1| ribonuclease HII [Escherichia coli O104:H4 str. 11-4522]
gi|354889973|gb|EHF50220.1| ribonuclease HII [Escherichia coli O104:H4 str. 11-4623]
gi|354902173|gb|EHF62295.1| ribonuclease HII [Escherichia coli O104:H4 str. 11-4632 C1]
gi|354905499|gb|EHF65582.1| ribonuclease HII [Escherichia coli O104:H4 str. 11-4632 C2]
gi|354908006|gb|EHF68062.1| ribonuclease HII [Escherichia coli O104:H4 str. 11-4632 C3]
gi|354910277|gb|EHF70305.1| ribonuclease HII [Escherichia coli O104:H4 str. 11-4632 C4]
gi|354918478|gb|EHF78434.1| ribonuclease HII [Escherichia coli O104:H4 str. 11-4632 C5]
gi|359331041|dbj|BAL37488.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Escherichia coli
str. K-12 substr. MDS42]
gi|371601993|gb|EHN90712.1| ribonuclease HII [Escherichia coli E101]
gi|375319413|gb|EHS65576.1| ribonuclease HII [Escherichia coli O157:H43 str. T22]
gi|378000737|gb|EHV63803.1| ribonuclease HII [Escherichia coli DEC6A]
gi|378002692|gb|EHV65743.1| ribonuclease HII family protein [Escherichia coli DEC6B]
gi|378004149|gb|EHV67178.1| ribonuclease HII [Escherichia coli DEC6C]
gi|378015607|gb|EHV78501.1| ribonuclease HII [Escherichia coli DEC6D]
gi|378017595|gb|EHV80467.1| ribonuclease HII family protein [Escherichia coli DEC6E]
gi|378039019|gb|EHW01524.1| ribonuclease HII family protein [Escherichia coli DEC7B]
gi|378054656|gb|EHW16934.1| ribonuclease HII [Escherichia coli DEC8A]
gi|378058180|gb|EHW20400.1| ribonuclease HII family protein [Escherichia coli DEC8B]
gi|378064676|gb|EHW26836.1| ribonuclease HII family protein [Escherichia coli DEC8C]
gi|378070173|gb|EHW32256.1| ribonuclease HII family protein [Escherichia coli DEC8D]
gi|378073903|gb|EHW35948.1| ribonuclease HII family protein [Escherichia coli DEC8E]
gi|378083230|gb|EHW45165.1| ribonuclease HII family protein [Escherichia coli DEC9A]
gi|378083521|gb|EHW45453.1| ribonuclease HII family protein [Escherichia coli DEC9B]
gi|378091403|gb|EHW53234.1| ribonuclease HII family protein [Escherichia coli DEC9C]
gi|378095888|gb|EHW57670.1| ribonuclease HII family protein [Escherichia coli DEC9D]
gi|378104003|gb|EHW65665.1| ribonuclease HII family protein [Escherichia coli DEC9E]
gi|378108926|gb|EHW70538.1| ribonuclease HII family protein [Escherichia coli DEC10A]
gi|378118787|gb|EHW80289.1| ribonuclease HII family protein [Escherichia coli DEC10B]
gi|378120097|gb|EHW81578.1| ribonuclease HII family protein [Escherichia coli DEC10C]
gi|378122111|gb|EHW83555.1| ribonuclease HII family protein [Escherichia coli DEC10D]
gi|378134849|gb|EHW96164.1| ribonuclease HII family protein [Escherichia coli DEC10E]
gi|378136662|gb|EHW97953.1| ribonuclease HII family protein [Escherichia coli DEC11A]
gi|378141415|gb|EHX02632.1| ribonuclease HII family protein [Escherichia coli DEC10F]
gi|378147765|gb|EHX08911.1| ribonuclease HII family protein [Escherichia coli DEC11B]
gi|378154345|gb|EHX15421.1| ribonuclease HII [Escherichia coli DEC11D]
gi|378158171|gb|EHX19201.1| ribonuclease HII [Escherichia coli DEC11C]
gi|378161934|gb|EHX22903.1| ribonuclease HII [Escherichia coli DEC11E]
gi|378176029|gb|EHX36837.1| ribonuclease HII family protein [Escherichia coli DEC12B]
gi|378176525|gb|EHX37331.1| ribonuclease HII [Escherichia coli DEC12A]
gi|378177565|gb|EHX38356.1| ribonuclease HII [Escherichia coli DEC12C]
gi|378190855|gb|EHX51433.1| ribonuclease HII family protein [Escherichia coli DEC13A]
gi|378192327|gb|EHX52890.1| ribonuclease HII family protein [Escherichia coli DEC12D]
gi|378193946|gb|EHX54469.1| ribonuclease HII family protein [Escherichia coli DEC12E]
gi|378205663|gb|EHX66073.1| ribonuclease HII family protein [Escherichia coli DEC13B]
gi|378208622|gb|EHX69003.1| ribonuclease HII family protein [Escherichia coli DEC13D]
gi|378209604|gb|EHX69973.1| ribonuclease HII family protein [Escherichia coli DEC13C]
gi|378220346|gb|EHX80607.1| ribonuclease HII family protein [Escherichia coli DEC13E]
gi|378223405|gb|EHX83629.1| ribonuclease HII [Escherichia coli DEC14A]
gi|378227583|gb|EHX87753.1| ribonuclease HII family protein [Escherichia coli DEC14B]
gi|378235071|gb|EHX95144.1| ribonuclease HII family protein [Escherichia coli DEC14C]
gi|378237835|gb|EHX97853.1| ribonuclease HII family protein [Escherichia coli DEC14D]
gi|378246206|gb|EHY06138.1| ribonuclease HII family protein [Escherichia coli DEC15A]
gi|378249959|gb|EHY09868.1| ribonuclease HII family protein [Escherichia coli DEC15D]
gi|378252396|gb|EHY12287.1| ribonuclease HII family protein [Escherichia coli DEC15C]
gi|378252453|gb|EHY12343.1| ribonuclease HII family protein [Escherichia coli DEC15B]
gi|378261822|gb|EHY21613.1| ribonuclease HII family protein [Escherichia coli DEC15E]
gi|383390208|gb|AFH15166.1| ribonuclease HII [Escherichia coli KO11FL]
gi|383403603|gb|AFH09846.1| ribonuclease HII [Escherichia coli W]
gi|383477513|gb|EID69430.1| Ribonuclease H [Escherichia coli W26]
gi|384377854|gb|EIE35747.1| Ribonuclease H [Escherichia coli J53]
gi|384472100|gb|EIE56162.1| Ribonuclease H [Escherichia coli AI27]
gi|385154212|gb|EIF16228.1| ribonuclease HII [Escherichia coli O32:H37 str. P4]
gi|385540598|gb|EIF87419.1| ribonuclease HII [Escherichia coli M919]
gi|385705122|gb|EIG42189.1| ribonuclease HII [Escherichia coli B799]
gi|385713665|gb|EIG50596.1| ribonuclease HII [Escherichia coli H730]
gi|386123815|gb|EIG72404.1| ribonuclease HII [Escherichia sp. 4_1_40B]
gi|386150274|gb|EIH01563.1| ribonuclease HII [Escherichia coli 5.0588]
gi|386169989|gb|EIH36497.1| ribonuclease HII [Escherichia coli 96.0497]
gi|386170672|gb|EIH42725.1| ribonuclease HII [Escherichia coli 99.0741]
gi|386176656|gb|EIH54135.1| ribonuclease HII [Escherichia coli 3.2608]
gi|386185056|gb|EIH67792.1| ribonuclease HII [Escherichia coli 93.0624]
gi|386191713|gb|EIH80454.1| ribonuclease HII [Escherichia coli 4.0522]
gi|386193723|gb|EIH88007.1| ribonuclease HII [Escherichia coli JB1-95]
gi|386199082|gb|EIH98073.1| ribonuclease HII [Escherichia coli 96.154]
gi|386216910|gb|EII33399.1| ribonuclease HII [Escherichia coli 4.0967]
gi|386228893|gb|EII56249.1| ribonuclease HII [Escherichia coli 3.3884]
gi|386237671|gb|EII74615.1| ribonuclease HII [Escherichia coli 3.2303]
gi|386252781|gb|EIJ02472.1| ribonuclease HII [Escherichia coli B41]
gi|386260994|gb|EIJ16462.1| ribonuclease HII [Escherichia coli 900105 (10e)]
gi|388338087|gb|EIL04564.1| ribonuclease HII [Escherichia coli O103:H25 str. CVM9340]
gi|388340294|gb|EIL06541.1| ribonuclease HII [Escherichia coli O103:H2 str. CVM9450]
gi|388347904|gb|EIL13551.1| ribonuclease HII [Escherichia coli O111:H11 str. CVM9534]
gi|388348819|gb|EIL14387.1| ribonuclease HII [Escherichia coli O111:H8 str. CVM9570]
gi|388367136|gb|EIL30831.1| ribonuclease HII [Escherichia coli O26:H11 str. CVM9942]
gi|388367396|gb|EIL31080.1| ribonuclease HII [Escherichia coli O111:H8 str. CVM9574]
gi|388369935|gb|EIL33501.1| ribonuclease HII [Escherichia coli O111:H11 str. CVM9545]
gi|388379959|gb|EIL42585.1| Ribonuclease H [Escherichia coli O26:H11 str. CVM10026]
gi|388397190|gb|EIL58219.1| ribonuclease HII [Escherichia coli 541-15]
gi|388403382|gb|EIL63909.1| ribonuclease HII [Escherichia coli 541-1]
gi|388411382|gb|EIL71563.1| ribonuclease HII [Escherichia coli 75]
gi|388414464|gb|EIL74421.1| ribonuclease HII [Escherichia coli CUMT8]
gi|391290068|gb|EIQ48544.1| ribonuclease HII [Shigella sonnei 3226-85]
gi|391290258|gb|EIQ48733.1| ribonuclease HII [Shigella sonnei 3233-85]
gi|391297356|gb|EIQ55410.1| ribonuclease HII family protein [Shigella sonnei 4822-66]
gi|391315748|gb|EIQ73272.1| ribonuclease HII family protein [Escherichia coli EPEC C342-62]
gi|394393542|gb|EJE70227.1| ribonuclease HII [Escherichia coli O111:H8 str. CVM9602]
gi|394394940|gb|EJE71456.1| ribonuclease HII [Escherichia coli O26:H11 str. CVM10224]
gi|394400447|gb|EJE76361.1| ribonuclease HII [Escherichia coli O111:H8 str. CVM9634]
gi|394412950|gb|EJE87036.1| ribonuclease HII [Escherichia coli O26:H11 str. CVM10021]
gi|394417680|gb|EJE91397.1| ribonuclease HII [Escherichia coli O111:H11 str. CVM9553]
gi|394421027|gb|EJE94522.1| ribonuclease HII [Escherichia coli O111:H11 str. CVM9455]
gi|394427706|gb|EJF00359.1| ribonuclease HII [Escherichia coli O26:H11 str. CVM9952]
gi|394431383|gb|EJF03591.1| ribonuclease HII [Escherichia coli O26:H11 str. CVM10030]
gi|397787188|gb|EJK98017.1| ribonuclease HII family protein [Escherichia coli STEC_O31]
gi|397903484|gb|EJL19781.1| ribonuclease HII family protein [Shigella sonnei str. Moseley]
gi|406779348|gb|AFS58772.1| ribonuclease HII [Escherichia coli O104:H4 str. 2009EL-2050]
gi|407055943|gb|AFS75994.1| ribonuclease HII [Escherichia coli O104:H4 str. 2011C-3493]
gi|407063672|gb|AFS84719.1| ribonuclease HII [Escherichia coli O104:H4 str. 2009EL-2071]
gi|408200424|gb|EKI25605.1| ribonuclease HII [Escherichia coli TW15901]
gi|408206739|gb|EKI31511.1| ribonuclease HII [Escherichia coli TW00353]
gi|408311125|gb|EKJ28137.1| ribonuclease HII [Escherichia coli EC1865]
gi|408348583|gb|EKJ62679.1| ribonuclease HII [Escherichia coli 0.1288]
gi|408459545|gb|EKJ83326.1| Ribonuclease H [Escherichia coli AD30]
gi|408573882|gb|EKK49688.1| ribonuclease HII [Escherichia coli 8.0566]
gi|408574472|gb|EKK50242.1| ribonuclease HII [Escherichia coli 8.0569]
gi|421933642|gb|EKT91429.1| ribonuclease HII [Escherichia coli O111:H8 str. CFSAN001632]
gi|421947740|gb|EKU04803.1| ribonuclease HII [Escherichia coli O26:H11 str. CFSAN001629]
gi|421949560|gb|EKU06494.1| ribonuclease HII [Escherichia coli O111:H11 str. CFSAN001630]
gi|429352512|gb|EKY89227.1| ribonuclease HII [Escherichia coli O104:H4 str. 11-02030]
gi|429353568|gb|EKY90276.1| ribonuclease HII [Escherichia coli O104:H4 str. 11-02033-1]
gi|429354066|gb|EKY90771.1| ribonuclease HII [Escherichia coli O104:H4 str. 11-02092]
gi|429367556|gb|EKZ04150.1| ribonuclease HII [Escherichia coli O104:H4 str. 11-02093]
gi|429368708|gb|EKZ05294.1| ribonuclease HII [Escherichia coli O104:H4 str. 11-02281]
gi|429370934|gb|EKZ07497.1| ribonuclease HII [Escherichia coli O104:H4 str. 11-02318]
gi|429383308|gb|EKZ19769.1| ribonuclease HII [Escherichia coli O104:H4 str. 11-02913]
gi|429386157|gb|EKZ22607.1| ribonuclease HII [Escherichia coli O104:H4 str. 11-03439]
gi|429387070|gb|EKZ23515.1| ribonuclease HII [Escherichia coli O104:H4 str. 11-03943]
gi|429398330|gb|EKZ34673.1| ribonuclease HII [Escherichia coli O104:H4 str. 11-04080]
gi|429400046|gb|EKZ36364.1| ribonuclease HII [Escherichia coli O104:H4 str. Ec11-9450]
gi|429400380|gb|EKZ36697.1| ribonuclease HII [Escherichia coli O104:H4 str. Ec11-9990]
gi|429411471|gb|EKZ47681.1| ribonuclease HII [Escherichia coli O104:H4 str. Ec11-4984]
gi|429413043|gb|EKZ49233.1| ribonuclease HII [Escherichia coli O104:H4 str. Ec11-4986]
gi|429420095|gb|EKZ56229.1| ribonuclease HII [Escherichia coli O104:H4 str. Ec11-4987]
gi|429423957|gb|EKZ60064.1| ribonuclease HII [Escherichia coli O104:H4 str. Ec11-4988]
gi|429430114|gb|EKZ66181.1| ribonuclease HII [Escherichia coli O104:H4 str. Ec11-5603]
gi|429436056|gb|EKZ72073.1| ribonuclease HII [Escherichia coli O104:H4 str. Ec11-5604]
gi|429443240|gb|EKZ79193.1| ribonuclease HII [Escherichia coli O104:H4 str. Ec12-0465]
gi|429445662|gb|EKZ81603.1| ribonuclease HII [Escherichia coli O104:H4 str. Ec11-6006]
gi|429452131|gb|EKZ88018.1| ribonuclease HII [Escherichia coli O104:H4 str. Ec12-0466]
gi|429456982|gb|EKZ92825.1| ribonuclease HII [Escherichia coli O104:H4 str. Ec11-9941]
gi|430889836|gb|ELC12496.1| ribonuclease HII [Escherichia coli KTE10]
gi|430894408|gb|ELC16697.1| ribonuclease HII [Escherichia coli KTE12]
gi|430944560|gb|ELC64653.1| ribonuclease HII [Escherichia coli KTE44]
gi|431020050|gb|ELD33441.1| ribonuclease HII [Escherichia coli KTE212]
gi|431101067|gb|ELE06036.1| ribonuclease HII [Escherichia coli KTE51]
gi|431109852|gb|ELE13802.1| ribonuclease HII [Escherichia coli KTE56]
gi|431166094|gb|ELE66421.1| ribonuclease HII [Escherichia coli KTE77]
gi|431174768|gb|ELE74804.1| ribonuclease HII [Escherichia coli KTE81]
gi|431204272|gb|ELF02845.1| ribonuclease HII [Escherichia coli KTE111]
gi|431214710|gb|ELF12464.1| ribonuclease HII [Escherichia coli KTE119]
gi|431225981|gb|ELF23167.1| ribonuclease HII [Escherichia coli KTE156]
gi|431232640|gb|ELF28306.1| ribonuclease HII [Escherichia coli KTE161]
gi|431248127|gb|ELF42336.1| ribonuclease HII [Escherichia coli KTE171]
gi|431287918|gb|ELF78704.1| ribonuclease HII [Escherichia coli KTE42]
gi|431291667|gb|ELF82170.1| ribonuclease HII [Escherichia coli KTE29]
gi|431314541|gb|ELG02493.1| ribonuclease HII [Escherichia coli KTE48]
gi|431352039|gb|ELG38825.1| ribonuclease HII [Escherichia coli KTE91]
gi|431358436|gb|ELG45094.1| ribonuclease HII [Escherichia coli KTE101]
gi|431389383|gb|ELG73096.1| ribonuclease HII [Escherichia coli KTE136]
gi|431415237|gb|ELG97787.1| ribonuclease HII [Escherichia coli KTE154]
gi|431457453|gb|ELH37792.1| ribonuclease HII [Escherichia coli KTE184]
gi|431472565|gb|ELH52453.1| ribonuclease HII [Escherichia coli KTE197]
gi|431475685|gb|ELH55489.1| ribonuclease HII [Escherichia coli KTE203]
gi|431574077|gb|ELI46862.1| ribonuclease HII [Escherichia coli KTE120]
gi|431616303|gb|ELI85370.1| ribonuclease HII [Escherichia coli KTE138]
gi|431697253|gb|ELJ62398.1| ribonuclease HII [Escherichia coli KTE232]
gi|431723794|gb|ELJ87739.1| ribonuclease HII [Escherichia coli KTE90]
gi|441608830|emb|CCP95494.1| Ribonuclease HII [Escherichia coli O10:K5(L):H4 str. ATCC 23506]
gi|449323641|gb|EMD13594.1| ribonuclease HII [Escherichia coli O08]
gi|449325766|gb|EMD15668.1| ribonuclease HII [Escherichia coli S17]
Length = 198
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 89/191 (46%), Gaps = 31/191 (16%)
Query: 10 WASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL 69
+ + G+DE GRGP++G +V + + + +A LN DSK L E++R L+E++
Sbjct: 6 YPHTQLVAGVDEVGRGPLVGAVVTAAVILDPA--RPIAGLN--DSKKLSEKRRLALYEEI 61
Query: 70 KVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 129
K ++ W++ +P E+ +++N I H + + + V + I V +D
Sbjct: 62 K-EKALSWSLGRAEPHEI-------DELN---ILHATMLAMQRAVAGLHIAPEYVLID-- 108
Query: 130 GDAEKYQAKLSQRFPSIKF--VVSKKADSLYPVVSGASIVAKVTRDRTLRGW--IFEETA 185
R P + + K DS P +S ASI+AKVTRD + +F +
Sbjct: 109 ----------GNRCPKLPMPAMAVVKGDSRVPEISAASILAKVTRDAEMAALDIVFPQYG 158
Query: 186 ENMHRNFGSGY 196
H+ + + +
Sbjct: 159 FAQHKGYPTAF 169
>gi|402818517|ref|ZP_10868100.1| ribonuclease HII [Paenibacillus alvei DSM 29]
gi|402503983|gb|EJW14515.1| ribonuclease HII [Paenibacillus alvei DSM 29]
Length = 219
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 87/182 (47%), Gaps = 29/182 (15%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDE GRG + G +V + P + L DSK L E+KR+EL+ D+ + ++V
Sbjct: 30 IAGIDEVGRGCLFGDVVAAAVILP----EGLIIEGINDSKKLSEKKRDELY-DIIIAEAV 84
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
W+V +D + ++IN+ + + A+ L+I EV L DAEK
Sbjct: 85 AWSVAHVDAATI-------DQINIKQAAR-RAMKEAVETLDIQ---PEVLL---VDAEKI 130
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRG-W--IFEETAENMHRNF 192
+Q K D+ ++ ASI+AKVTRDR G W + E +H+ +
Sbjct: 131 DLPFTQE-------AIIKGDANSQSIAAASIIAKVTRDRLCSGEWNDRYPEYGIAVHKGY 183
Query: 193 GS 194
G+
Sbjct: 184 GT 185
>gi|15790853|ref|NP_280677.1| ribonuclease HII [Halobacterium sp. NRC-1]
gi|169236599|ref|YP_001689799.1| ribonuclease HII [Halobacterium salinarum R1]
gi|74568991|sp|Q9HNR3.1|RNH2_HALSA RecName: Full=Ribonuclease HII; Short=RNase HII
gi|189043604|sp|B0R6T4.1|RNH2_HALS3 RecName: Full=Ribonuclease HII; Short=RNase HII
gi|10581416|gb|AAG20157.1| RNAase H [Halobacterium sp. NRC-1]
gi|167727665|emb|CAP14453.1| ribonuclease H, type 2 [Halobacterium salinarum R1]
Length = 212
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 93/213 (43%), Gaps = 32/213 (15%)
Query: 18 GIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGW 77
G+DEAG+GPVLG M + ADSK L ++R EL + ++ + VG
Sbjct: 5 GVDEAGKGPVLGSM----FAAAVAGDPAAVPDGVADSKRLSADRRAELDDRVRASMRVGV 60
Query: 78 AVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA--EKY 135
A E+ ++ + ++N ++ + + RV+ G+ Y+D GD +++
Sbjct: 61 A-------EVPVDRIDDPETDMNTLTVAAQADALGRVVADGMAG---YVDA-GDVNEQRF 109
Query: 136 QAKLSQRFPS-IKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGS 194
+++ R + + AD Y +V+ ASIVAKV RD + + A + GS
Sbjct: 110 GRRVANRVAADVAVTAEHGADDEYDLVAAASIVAKVARDAHV-----DALAAAFDADIGS 164
Query: 195 GYPGDHKHIIF---------GFPSLVRFSWGTC 218
GYP D F P R SW T
Sbjct: 165 GYPSDSTTREFLAAYVREHGELPECARASWQTS 197
>gi|417229817|ref|ZP_12031403.1| ribonuclease HII [Escherichia coli 5.0959]
gi|386206307|gb|EII10813.1| ribonuclease HII [Escherichia coli 5.0959]
Length = 198
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 89/191 (46%), Gaps = 31/191 (16%)
Query: 10 WASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL 69
+ + G+DE GRGP++G +V + + + +A LN DSK L E++R L+E++
Sbjct: 6 YPHTQLVAGVDEVGRGPLVGAVVTAAVILDPA--RPIAGLN--DSKKLSEKRRLALYEEI 61
Query: 70 KVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 129
K ++ W++ +P E+ +++N I H + + + V + I V +D
Sbjct: 62 K-EKALSWSLGRAEPHEI-------DELN---ILHATMLAMQRAVAGLHIAPEYVLID-- 108
Query: 130 GDAEKYQAKLSQRFPSIKF--VVSKKADSLYPVVSGASIVAKVTRDRTLRGW--IFEETA 185
R P + + K DS P +S ASI+AKVTRD + +F +
Sbjct: 109 ----------GNRCPKLPMPTMAVVKGDSRVPEISAASILAKVTRDAEMAALDIVFPQYG 158
Query: 186 ENMHRNFGSGY 196
H+ + + +
Sbjct: 159 FAQHKGYPTAF 169
>gi|227872391|ref|ZP_03990738.1| ribonuclease H [Oribacterium sinus F0268]
gi|227841751|gb|EEJ52034.1| ribonuclease H [Oribacterium sinus F0268]
Length = 217
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 100/220 (45%), Gaps = 40/220 (18%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I G+DEAGRGP+ GP+V P + LN DSK + E++RE LF ++K N ++
Sbjct: 29 IAGVDEAGRGPLAGPVVAATAILPKDH--LFYYLN--DSKKMTEKRREALFLEIKEN-AI 83
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRV-LNIGILLTEVYLDTVGDAEK 134
+ + I+ P + ++IN+ + ++++ I + N I+ + + D V
Sbjct: 84 AYGIGIVSPERI-------DEINILQATYEAMRLAIEEMEKNFSIIPSLLLNDAV----- 131
Query: 135 YQAKLSQRFPSIKF----VVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHR 190
R P + +V A SL ++ AS++AKV+RD + + E +
Sbjct: 132 -------RIPMVDIPQIPIVHGDAKSL--SIAAASVLAKVSRDHLMLDYAKEYPEYGFEK 182
Query: 191 NFGSGYPGDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLW 230
+ G G + I+ +G C H + ++ L+
Sbjct: 183 HKGYGTKAHTEAIL---------EYGPCPIHRRSFLKKLY 213
>gi|309796360|ref|ZP_07690769.1| ribonuclease HII [Escherichia coli MS 145-7]
gi|308120064|gb|EFO57326.1| ribonuclease HII [Escherichia coli MS 145-7]
Length = 198
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 89/191 (46%), Gaps = 31/191 (16%)
Query: 10 WASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL 69
+ + G+DE GRGP++G +V + + + +A LN DSK L E++R L+E++
Sbjct: 6 YPHTQLVAGVDEVGRGPLVGAVVTAAVILDPA--RPIAGLN--DSKKLSEKRRLALYEEI 61
Query: 70 KVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 129
K ++ W++ +P E+ +++N I H + + + V + I V +D
Sbjct: 62 K-EKALSWSLGRAEPHEI-------DELN---ILHATMLAMQRAVAELHIAPEYVLID-- 108
Query: 130 GDAEKYQAKLSQRFPSIKF--VVSKKADSLYPVVSGASIVAKVTRDRTLRGW--IFEETA 185
R P + + K DS P +S ASI+AKVTRD + +F +
Sbjct: 109 ----------GNRCPKLPMPAMAVVKGDSRVPEISAASILAKVTRDAEMAALDIVFPQYG 158
Query: 186 ENMHRNFGSGY 196
H+ + + +
Sbjct: 159 FAQHKGYPTAF 169
>gi|448823469|ref|YP_007416634.1| ribonuclease HII [Corynebacterium urealyticum DSM 7111]
gi|448276966|gb|AGE36390.1| ribonuclease HII [Corynebacterium urealyticum DSM 7111]
Length = 241
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 62/213 (29%), Positives = 88/213 (41%), Gaps = 46/213 (21%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+ G+DEAGRG GP+ P LA LN DSK L ++RE+LF D +V
Sbjct: 41 VAGVDEAGRGACCGPITIASCILPDHGVPELAGLN--DSKKLTPKRREKLF-DAITEHAV 97
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
+ + I E+ K + IN G+ V + + V D V E
Sbjct: 98 AYKIVHIPAAEIDQKGIQYANIN----------GMYRAVAGLSVEPDVVLTDAVHLPEL- 146
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENM------- 188
+ P +K D+L P +S ASI+AKV+RDR + E AE
Sbjct: 147 ---ACEHAPLVK------GDALSPAISAASILAKVSRDR-----LMVEMAEKYPGYGLAG 192
Query: 189 HRNFGSGYPGDHKHIIFGFPSLVRFSWGTCTSH 221
H+ +G+ KH+ + VR G C H
Sbjct: 193 HKGYGTA-----KHM-----AAVRL-HGACPEH 214
>gi|73541556|ref|YP_296076.1| ribonuclease HII [Ralstonia eutropha JMP134]
gi|97189223|sp|Q470F1.1|RNH2_RALEJ RecName: Full=Ribonuclease HII; Short=RNase HII
gi|72118969|gb|AAZ61232.1| RNase HII [Ralstonia eutropha JMP134]
Length = 218
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 64/202 (31%), Positives = 85/202 (42%), Gaps = 34/202 (16%)
Query: 1 MGSEAALPKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEE 60
MG + A P AS + G+DEAGRGP+ GP VY + L L ADSK L
Sbjct: 11 MGLDLA-PVAASVRFLCGVDEAGRGPLAGP-VYAAAVVFDPAKPMLRGL--ADSKVLTAS 66
Query: 61 KREELFEDLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNI--- 117
KRE L++ + ++GW + E I+ I H S + + V +
Sbjct: 67 KREALYDKI-CERALGWHIAFATVEE----------IDTLNILHASMLAMQRAVQGLAEK 115
Query: 118 GILLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSK--KADSLYPVVSGASIVAKVTRDRT 175
G+ V +D R P + F V K DSL +S ASI+AKV RDR
Sbjct: 116 GVTPDLVQVD------------GNRCPQVPFPVEAIVKGDSLVKAISAASILAKVARDRE 163
Query: 176 LRGWIFEETAENMHRNFGSGYP 197
L E + SGYP
Sbjct: 164 L--LTLHEVYPQYGFDAHSGYP 183
>gi|432830158|ref|ZP_20063768.1| ribonuclease HII [Escherichia coli KTE135]
gi|431380823|gb|ELG65462.1| ribonuclease HII [Escherichia coli KTE135]
Length = 198
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 89/191 (46%), Gaps = 31/191 (16%)
Query: 10 WASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL 69
+ + G+DE GRGP++G +V + + + +A LN DSK L E++R L+E++
Sbjct: 6 YPHTQLVAGVDEVGRGPLVGAVVTAAVILDPA--RPIAGLN--DSKKLSEKRRLALYEEI 61
Query: 70 KVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 129
K ++ W++ +P E+ +++N I H + + + V + I V +D
Sbjct: 62 K-EKALSWSLGRAEPHEI-------DELN---ILHATMLAMQRAVAGLHIAPEYVLID-- 108
Query: 130 GDAEKYQAKLSQRFPSIKF--VVSKKADSLYPVVSGASIVAKVTRDRTLRGW--IFEETA 185
R P + + K DS P +S ASI+AKVTRD + +F +
Sbjct: 109 ----------GNRCPKLPMPAMAVVKGDSRVPEISAASILAKVTRDAEMAALDIVFPQYG 158
Query: 186 ENMHRNFGSGY 196
H+ + + +
Sbjct: 159 FAQHKGYPTAF 169
>gi|449107395|ref|ZP_21744051.1| ribonuclease HII [Treponema denticola ASLM]
gi|448962640|gb|EMB43328.1| ribonuclease HII [Treponema denticola ASLM]
Length = 198
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 93/197 (47%), Gaps = 30/197 (15%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+ GIDEAGRGP+ GP+ + P + ++ DSK L E+KREE+ + + + +V
Sbjct: 2 LCGIDEAGRGPLAGPVTAAAVILPSRFDFSI----LKDSKKLTEKKREEVRKTIYADPNV 57
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYL--DTVGDAE 133
W++ E+ + + E +++ GL ++ L + ++ D + D
Sbjct: 58 LWSIGWASNYEIDEINILQATFLAMERAYE---GLYLKLQEFCKLNNDKFIEPDIIVDG- 113
Query: 134 KYQAKLSQRFPSIKFVVSKKA-----DSLYPVVSGASIVAKVTRDRTL--RGWIFEETAE 186
P+IK S KA DS+Y V++ ASI+AK RD+ + W++ E
Sbjct: 114 -------NFIPNIKNCSSIKALVKADDSVYEVMA-ASILAKTARDKMMIRYSWLYPEYGY 165
Query: 187 NMHRNFGSGYPGDHKHI 203
H+ +G+ KHI
Sbjct: 166 EKHKGYGT-----KKHI 177
>gi|320546752|ref|ZP_08041063.1| ribonuclease HII [Streptococcus equinus ATCC 9812]
gi|320448631|gb|EFW89363.1| ribonuclease HII [Streptococcus equinus ATCC 9812]
Length = 259
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 84/189 (44%), Gaps = 39/189 (20%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
I GIDE GRGP+ GP+V C+ P + + DSK + ++ EE++E++ + +
Sbjct: 71 AIGGIDEVGRGPLAGPVVTACVILP----KNCKIKHLNDSKKIPKKHHEEIYEEV-LARA 125
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIG--------ILLTEVYL 126
+G + +ID N I+ I + +G++ + + +L+ ++L
Sbjct: 126 LGVGIGVID----------NNVIDDINIYEATKVGMLQAIEQLKGEVTRPDYLLIDAMHL 175
Query: 127 DTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAE 186
DT P + K D+ ++ ASIVAKVTRDR + + E
Sbjct: 176 DT-------------DIPQESLI---KGDANSLSIAAASIVAKVTRDRMMADYAKEYPGY 219
Query: 187 NMHRNFGSG 195
+N G G
Sbjct: 220 AFEKNVGYG 228
>gi|253988139|ref|YP_003039495.1| ribonuclease HII [Photorhabdus asymbiotica]
gi|253779589|emb|CAQ82750.1| ribonuclease HII [Photorhabdus asymbiotica]
Length = 196
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 89/192 (46%), Gaps = 35/192 (18%)
Query: 10 WASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL 69
+ S I G+DE GRGP++G +V + S + +A L ADSK L E++REEL+ ++
Sbjct: 6 YPSANLIAGVDEVGRGPLVGAVVTAAVILDPS--RPIAGL--ADSKKLSEKRREELYLEI 61
Query: 70 KVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 129
++ W++ +P E+ +++N I H + + + V + I V +D
Sbjct: 62 -TEKALCWSLGRAEPEEI-------DQLN---ILHATMLAMQRAVAGLSISPEYVLID-- 108
Query: 130 GDAEKYQAKLSQRFPSIKFVVSK--KADSLYPVVSGASIVAKVTRDRTL--RGWIFEETA 185
R P + K D L +S ASIVAKVTRDR + +F E
Sbjct: 109 ----------GNRCPELPMPAQAVIKGDGLVAEISAASIVAKVTRDREMVELDQLFPEYG 158
Query: 186 ENMHRNFGSGYP 197
H+ GYP
Sbjct: 159 FAKHK----GYP 166
>gi|315425616|dbj|BAJ47275.1| ribonuclease HII [Candidatus Caldiarchaeum subterraneum]
gi|343484489|dbj|BAJ50143.1| ribonuclease HII [Candidatus Caldiarchaeum subterraneum]
Length = 189
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 50/89 (56%), Gaps = 2/89 (2%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+ G+DEAGRG V+GP+V + L L ADSKTL +REE+FE L+ + V
Sbjct: 2 LCGVDEAGRGCVVGPLVVAAVAAERDELPLLRALGVADSKTLSPRRREEIFEKLRASFRV 61
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISH 104
G+ ++ PR +S+ + LN++ +
Sbjct: 62 GYM--LVSPRRISSCLRVNGGDGLNDLEY 88
>gi|24111618|ref|NP_706128.1| ribonuclease HII [Shigella flexneri 2a str. 301]
gi|30061740|ref|NP_835911.1| ribonuclease HII [Shigella flexneri 2a str. 2457T]
gi|82775573|ref|YP_401920.1| ribonuclease HII [Shigella dysenteriae Sd197]
gi|110804235|ref|YP_687755.1| ribonuclease HII [Shigella flexneri 5 str. 8401]
gi|309787143|ref|ZP_07681755.1| ribonuclease HII family protein [Shigella dysenteriae 1617]
gi|384541754|ref|YP_005725815.1| Ribonuclease HII [Shigella flexneri 2002017]
gi|415859678|ref|ZP_11533877.1| ribonuclease HII family protein [Shigella flexneri 2a str. 2457T]
gi|417700129|ref|ZP_12349277.1| ribonuclease HII family protein [Shigella flexneri K-218]
gi|417705677|ref|ZP_12354752.1| ribonuclease HII family protein [Shigella flexneri VA-6]
gi|417721141|ref|ZP_12369995.1| ribonuclease HII family protein [Shigella flexneri K-304]
gi|417726531|ref|ZP_12375281.1| ribonuclease HII family protein [Shigella flexneri K-671]
gi|417731628|ref|ZP_12380302.1| ribonuclease HII family protein [Shigella flexneri 2747-71]
gi|417737018|ref|ZP_12385631.1| ribonuclease HII family protein [Shigella flexneri 4343-70]
gi|417741668|ref|ZP_12390224.1| ribonuclease HII family protein [Shigella flexneri 2930-71]
gi|418252922|ref|ZP_12878344.1| ribonuclease HII family protein [Shigella flexneri 6603-63]
gi|420329279|ref|ZP_14830996.1| ribonuclease HII [Shigella flexneri K-1770]
gi|420339653|ref|ZP_14841190.1| ribonuclease HII [Shigella flexneri K-404]
gi|420369765|ref|ZP_14870436.1| ribonuclease HII [Shigella flexneri 1235-66]
gi|422971414|ref|ZP_16974689.1| ribonuclease HII [Escherichia coli TA124]
gi|424836702|ref|ZP_18261339.1| ribonuclease HII [Shigella flexneri 5a str. M90T]
gi|432944748|ref|ZP_20141158.1| ribonuclease HII [Escherichia coli KTE196]
gi|433041678|ref|ZP_20229217.1| ribonuclease HII [Escherichia coli KTE117]
gi|39932374|sp|Q83MN1.1|RNH2_SHIFL RecName: Full=Ribonuclease HII; Short=RNase HII
gi|97189271|sp|Q32JS6.1|RNH2_SHIDS RecName: Full=Ribonuclease HII; Short=RNase HII
gi|123147263|sp|Q0T826.1|RNH2_SHIF8 RecName: Full=Ribonuclease HII; Short=RNase HII
gi|24050387|gb|AAN41835.1| RNAse HII [Shigella flexneri 2a str. 301]
gi|30039982|gb|AAP15716.1| RNAse HII [Shigella flexneri 2a str. 2457T]
gi|81239721|gb|ABB60431.1| RNAse HII [Shigella dysenteriae Sd197]
gi|110613783|gb|ABF02450.1| RNAse HII [Shigella flexneri 5 str. 8401]
gi|281599538|gb|ADA72522.1| Ribonuclease HII [Shigella flexneri 2002017]
gi|308924721|gb|EFP70216.1| ribonuclease HII family protein [Shigella dysenteriae 1617]
gi|313646756|gb|EFS11215.1| ribonuclease HII family protein [Shigella flexneri 2a str. 2457T]
gi|332762020|gb|EGJ92291.1| ribonuclease HII family protein [Shigella flexneri 2747-71]
gi|332762187|gb|EGJ92456.1| ribonuclease HII family protein [Shigella flexneri 4343-70]
gi|332765032|gb|EGJ95260.1| ribonuclease HII family protein [Shigella flexneri K-671]
gi|332768686|gb|EGJ98866.1| ribonuclease HII family protein [Shigella flexneri 2930-71]
gi|333009387|gb|EGK28843.1| ribonuclease HII family protein [Shigella flexneri K-218]
gi|333010678|gb|EGK30111.1| ribonuclease HII family protein [Shigella flexneri VA-6]
gi|333022198|gb|EGK41437.1| ribonuclease HII family protein [Shigella flexneri K-304]
gi|371598763|gb|EHN87558.1| ribonuclease HII [Escherichia coli TA124]
gi|383465754|gb|EID60775.1| ribonuclease HII [Shigella flexneri 5a str. M90T]
gi|391260905|gb|EIQ19955.1| ribonuclease HII [Shigella flexneri K-1770]
gi|391275196|gb|EIQ33989.1| ribonuclease HII [Shigella flexneri K-404]
gi|391320926|gb|EIQ77703.1| ribonuclease HII [Shigella flexneri 1235-66]
gi|397901989|gb|EJL18325.1| ribonuclease HII family protein [Shigella flexneri 6603-63]
gi|431464679|gb|ELH44798.1| ribonuclease HII [Escherichia coli KTE196]
gi|431561323|gb|ELI34707.1| ribonuclease HII [Escherichia coli KTE117]
Length = 198
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 89/191 (46%), Gaps = 31/191 (16%)
Query: 10 WASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL 69
+ + G+DE GRGP++G +V + + + +A LN DSK L E++R L+E++
Sbjct: 6 YPHTQLVAGVDEVGRGPLVGAVVTAAVILDPA--RPIAGLN--DSKKLSEKRRLALYEEI 61
Query: 70 KVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 129
K ++ W++ +P E+ +++N I H + + + V + I V +D
Sbjct: 62 K-EKALSWSLGRAEPHEI-------DELN---ILHATMLAMQRAVAGLHIAPEYVLID-- 108
Query: 130 GDAEKYQAKLSQRFPSIKF--VVSKKADSLYPVVSGASIVAKVTRDRTLRGW--IFEETA 185
R P + + K DS P +S ASI+AKVTRD + +F +
Sbjct: 109 ----------GNRCPKLPMPAMAVVKGDSRVPEISAASILAKVTRDAEMAALDIVFPQYG 158
Query: 186 ENMHRNFGSGY 196
H+ + + +
Sbjct: 159 FAQHKGYPTAF 169
>gi|336064248|ref|YP_004559107.1| ribonuclease HII [Streptococcus pasteurianus ATCC 43144]
gi|334282448|dbj|BAK30021.1| ribonuclease HII [Streptococcus pasteurianus ATCC 43144]
Length = 259
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 88/182 (48%), Gaps = 25/182 (13%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
I GIDE GRGP+ GP+V C+ P + + DSK + ++ EE+++++ + +
Sbjct: 71 AIAGIDEVGRGPLAGPVVTACVILP----KNCKIKHLNDSKKIPKKHHEEIYQEI-LARA 125
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNI-GILLTEVYLDTVGDAE 133
+G + I+D N I+ I + +G++ + + G + YL + DA
Sbjct: 126 LGIGIGIVD----------NNVIDQINIYEATKVGMLQAINQLKGEVTKPDYL--LIDAM 173
Query: 134 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG 193
+ + Q+ ++ A+SL ++ ASIVAKVTRDR + + + +N G
Sbjct: 174 HLETSIPQQ-----SLLKGDANSL--SIAAASIVAKVTRDRMMADYANDYPGYAFEKNVG 226
Query: 194 SG 195
G
Sbjct: 227 YG 228
>gi|326693008|ref|ZP_08230013.1| ribonuclease HII [Leuconostoc argentinum KCTC 3773]
Length = 258
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 95/221 (42%), Gaps = 49/221 (22%)
Query: 9 KWASNPC-IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFE 67
+WA + G+DE GRGP+ GP+V + P + A L+ DSK L E+ RE+LF+
Sbjct: 65 QWAQGLSHVAGVDEVGRGPLAGPVVAAAVILPHDF----AELDVIDSKQLSEKMREQLFD 120
Query: 68 DLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLD 127
+ + ++ + ++D + + IN+ E + + + V + + +D
Sbjct: 121 RI-IAQALSIGIGVVDATVI-------DDINIYEAAR---LAMTQAVAELAPEPDYLLID 169
Query: 128 TVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAEN 187
+ L P + + K D+ ++ ASI+AKVTRDR
Sbjct: 170 AM--------TLQTDIPQLSLI---KGDARSNSIAAASIIAKVTRDR------------- 205
Query: 188 MHRNFGSGYPGDHKHIIFGFPSLVRFSWGTCTSHFKDIVEV 228
M ++ YPG +GF +GT +H + E+
Sbjct: 206 MMADYDRQYPG------YGFAQ--HAGYGT-KAHLAALAEL 237
>gi|417710816|ref|ZP_12359825.1| ribonuclease HII family protein [Shigella flexneri K-272]
gi|417715482|ref|ZP_12364420.1| ribonuclease HII family protein [Shigella flexneri K-227]
gi|417826197|ref|ZP_12472779.1| ribonuclease HII family protein [Shigella flexneri J1713]
gi|333011022|gb|EGK30441.1| ribonuclease HII family protein [Shigella flexneri K-272]
gi|333021817|gb|EGK41066.1| ribonuclease HII family protein [Shigella flexneri K-227]
gi|335578384|gb|EGM63602.1| ribonuclease HII family protein [Shigella flexneri J1713]
Length = 198
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 88/186 (47%), Gaps = 31/186 (16%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
+ G+DE GRGP++G +V + + + +A LN DSK L E++R L+E++K +
Sbjct: 11 LVAGVDEVGRGPLVGAVVTAAVILDPA--RPIAGLN--DSKKLSEKRRLALYEEIK-EKA 65
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
+ W++ +P E+ +++N I H + + + V + I V +D
Sbjct: 66 LSWSLGRAEPHEI-------DELN---ILHATMLAMQRAVAGLHIAPEYVLID------- 108
Query: 135 YQAKLSQRFPSIKF--VVSKKADSLYPVVSGASIVAKVTRDRTLRGW--IFEETAENMHR 190
R P + + K DS P +S ASI+AKVTRD + +F + H+
Sbjct: 109 -----GNRCPKLPMPAMAVVKGDSRVPEISAASILAKVTRDAEMAALDIVFPQYGFAQHK 163
Query: 191 NFGSGY 196
+ + +
Sbjct: 164 GYPTAF 169
>gi|306833475|ref|ZP_07466602.1| ribonuclease HII [Streptococcus bovis ATCC 700338]
gi|304424245|gb|EFM27384.1| ribonuclease HII [Streptococcus bovis ATCC 700338]
Length = 259
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 88/182 (48%), Gaps = 25/182 (13%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
I GIDE GRGP+ GP+V C+ P + + DSK + ++ EE+++++ + +
Sbjct: 71 AIAGIDEVGRGPLAGPVVTACVILP----KNCKIKHLNDSKKIPKKHHEEIYQEI-LARA 125
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNI-GILLTEVYLDTVGDAE 133
+G + I+D N I+ I + +G++ + + G + YL + DA
Sbjct: 126 LGIGIGIVD----------NNVIDQINIYEATKVGMLQAINQLKGEVTKPDYL--LIDAM 173
Query: 134 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG 193
+ + Q+ ++ A+SL ++ ASIVAKVTRDR + + + +N G
Sbjct: 174 HLETSIPQQ-----SLLKGDANSL--SIAAASIVAKVTRDRMMADYANDYPGYAFEKNVG 226
Query: 194 SG 195
G
Sbjct: 227 YG 228
>gi|423068504|ref|ZP_17057292.1| ribonuclease HII [Streptococcus intermedius F0395]
gi|355366759|gb|EHG14476.1| ribonuclease HII [Streptococcus intermedius F0395]
Length = 260
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 87/180 (48%), Gaps = 26/180 (14%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDE GRGP+ GP+V + P + + + LN DSK + ++K E +++++ + +V
Sbjct: 72 IAGIDEVGRGPLAGPVVAAAVILPKNSK--IKGLN--DSKKISKKKHETIYQEV-LKQAV 126
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
+ I D + + +++N+ E + + +I V N+ I + +D +
Sbjct: 127 AIGIGIKDNQVI-------DEVNIYEA---TKLAMIEAVGNLKITPQHLLIDAM------ 170
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 195
KL + P + K D+ ++ ASIVAKVTRDR + + + N G G
Sbjct: 171 --KLDLQIPQTSII---KGDANSLSIAAASIVAKVTRDRMMTDYELIYPGYDFSHNVGYG 225
>gi|347532232|ref|YP_004838995.1| ribonuclease HII [Roseburia hominis A2-183]
gi|345502380|gb|AEN97063.1| ribonuclease HII [Roseburia hominis A2-183]
Length = 255
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 78/163 (47%), Gaps = 29/163 (17%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDE GRGP+ GP+V G + P + L DSK L KREEL+ D+ + +V
Sbjct: 73 ICGIDEVGRGPLAGPVVAGAVILP----KDCDILYINDSKKLSAAKREELY-DVIMEKAV 127
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
+ ++ P + ++IN+ + ++++ I++ +GDA
Sbjct: 128 AVGIGMVGPERI-------DEINILQATYEAMREAISK---------------LGDAPDI 165
Query: 136 QAKLSQRFP--SIKFVVSKKADSLYPVVSGASIVAKVTRDRTL 176
+ P +I+ V K D+ + ASIVAKVTRDR +
Sbjct: 166 LLNDAVAIPGVAIRQVPIIKGDAKSISIGAASIVAKVTRDRLM 208
>gi|289766192|ref|ZP_06525570.1| ribonuclease HII [Fusobacterium sp. D11]
gi|289717747|gb|EFD81759.1| ribonuclease HII [Fusobacterium sp. D11]
Length = 213
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 91/181 (50%), Gaps = 18/181 (9%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
++G+DEAGRGP+ GP+V + Y + L +N DSK L E+KRE+L++ + N V
Sbjct: 15 VIGVDEAGRGPLAGPVVAAAVILK-EYSEELDEIN--DSKKLTEKKREKLYDIIMKNFYV 71
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
+ ++ + KM N +N + ++ A+ + + E Y+ V K
Sbjct: 72 AVGISTVEEID---KM---NILNADFLAMRRALKDLENIKKDKKDKKE-YIVLVDGNLKI 124
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW--IFEETAENMHRNFG 193
+ ++ P + K D+ V+ ASI+AKVTRDR ++ I+ + + H+ +G
Sbjct: 125 KEYSGKQLPIV------KGDAKSLSVAAASIIAKVTRDRFMKDLANIYPDYSFEKHKGYG 178
Query: 194 S 194
+
Sbjct: 179 T 179
>gi|392957507|ref|ZP_10323030.1| ribonuclease H [Bacillus macauensis ZFHKF-1]
gi|391876470|gb|EIT85067.1| ribonuclease H [Bacillus macauensis ZFHKF-1]
Length = 259
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 86/196 (43%), Gaps = 27/196 (13%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
I GIDEAGRGP+ GP+V + P + LN DSK L +KR L+ D+ +
Sbjct: 75 MIAGIDEAGRGPLAGPVVAAAVILPTDV--YIPGLN--DSKQLSAQKRASLY-DIIQQQA 129
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
+ V +I + + +++N+ E S + ++ V + + + +D +
Sbjct: 130 IAIGVGVISAQTI-------DEVNIYEA---SKLAMLEAVQKLAVTPDHLLIDAM----- 174
Query: 135 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGS 194
L K + K D+ ++ AS++AKVTRD + + H+N G
Sbjct: 175 ---VLPTEIAQTKII---KGDARSVSIAAASVIAKVTRDHYMEKLHEQYPHYQFHKNMGY 228
Query: 195 GYPGDHKHIIFGFPSL 210
G DH + + S+
Sbjct: 229 G-TKDHLEALHTYGSI 243
>gi|402823178|ref|ZP_10872615.1| ribonuclease HII [Sphingomonas sp. LH128]
gi|402263241|gb|EJU13167.1| ribonuclease HII [Sphingomonas sp. LH128]
Length = 192
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 81/182 (44%), Gaps = 18/182 (9%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
++G+DEAGRGP+ GP+V G + C + + DSK L +R EL + +
Sbjct: 1 MIGVDEAGRGPLAGPVVAGAVML-CKPRPS----GLDDSKKLSAMRRSEL--EATIKRRC 53
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
WAV ++D ++ N ++ A+ + L G EV +D G+ +
Sbjct: 54 RWAVGVVDVEDID----RLNIFGATMLAMTRAVAALCATL--GEEPHEVLVD--GNMTPH 105
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 195
+ R+ + V D++ P +S ASI+AK RDR +R RN G G
Sbjct: 106 GRREEWRWNARAIV---GGDAIEPCISAASIIAKEHRDRLMRDLALVHPHYGWERNAGYG 162
Query: 196 YP 197
P
Sbjct: 163 TP 164
>gi|309807515|ref|ZP_07701472.1| ribonuclease HII [Lactobacillus iners LactinV 01V1-a]
gi|308169242|gb|EFO71303.1| ribonuclease HII [Lactobacillus iners LactinV 01V1-a]
Length = 250
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 94/220 (42%), Gaps = 41/220 (18%)
Query: 10 WASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFE-- 67
W N + G+DE GRGP+ GP+V + + ++ DSK L +KR ELF
Sbjct: 63 WCQNKLVAGVDEVGRGPLAGPVVTAAVIL----DKNFDLIDVNDSKKLTPKKRNELFPMI 118
Query: 68 -DLKVNDSVGWA-VDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVY 125
D V SVG A D+ID KIN+ E + + V + + +
Sbjct: 119 LDKAVCVSVGLANNDLID------------KINIYEADR---VAMARAVKGLKVKPDALL 163
Query: 126 LDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETA 185
+D + + P +K + + DS ++ ASIVAKV RDR + + E
Sbjct: 164 VDAMD--------VPIDLPQLKLI---RGDSKSNSIAAASIVAKVFRDRLMDAY--GEIY 210
Query: 186 ENMHRNFGSGYPGDHKHII----FGFPSLVRFSWGTCTSH 221
+GY G KH+ +G + RFS+ +S+
Sbjct: 211 PEYDFAHNAGY-GTAKHLSALKQYGPTPIHRFSFEPVSSY 249
>gi|432546500|ref|ZP_19783312.1| ribonuclease HII [Escherichia coli KTE236]
gi|432546905|ref|ZP_19783705.1| ribonuclease HII [Escherichia coli KTE237]
gi|432625149|ref|ZP_19861148.1| ribonuclease HII [Escherichia coli KTE76]
gi|432818403|ref|ZP_20052130.1| ribonuclease HII [Escherichia coli KTE115]
gi|431068282|gb|ELD76787.1| ribonuclease HII [Escherichia coli KTE236]
gi|431086717|gb|ELD92739.1| ribonuclease HII [Escherichia coli KTE237]
gi|431153215|gb|ELE54134.1| ribonuclease HII [Escherichia coli KTE76]
gi|431359392|gb|ELG46037.1| ribonuclease HII [Escherichia coli KTE115]
Length = 198
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 90/183 (49%), Gaps = 27/183 (14%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+ G+DE GRGP++G +V + S + +A LN DSK L E++R L E++K + ++
Sbjct: 12 VAGVDEVGRGPLVGAVVTAAVILDPS--RPIAGLN--DSKKLSEKRRLALCEEIK-DKAL 66
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
W++ +P E+ +++N I H + + + V + I V +D
Sbjct: 67 SWSLGRAEPHEI-------DELN---ILHATMLAMQRAVAGLHIAPEYVLIDG-----NR 111
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW--IFEETAENMHRNFG 193
KL PS+ V K DS P +S ASI+AKVTRD + +F + H+ +
Sbjct: 112 CPKLP--MPSMAVV---KGDSRVPEISAASILAKVTRDAEMAALDIVFPQYGFAQHKGYP 166
Query: 194 SGY 196
+ +
Sbjct: 167 TAF 169
>gi|336439691|ref|ZP_08619298.1| ribonuclease HII [Lachnospiraceae bacterium 1_1_57FAA]
gi|336015589|gb|EGN45403.1| ribonuclease HII [Lachnospiraceae bacterium 1_1_57FAA]
Length = 197
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 89/188 (47%), Gaps = 27/188 (14%)
Query: 9 KWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFED 68
K+ I GIDEAGRGP+ GP+V G + P + L DSK L +RE L+++
Sbjct: 7 KYKDAEMICGIDEAGRGPLAGPVVAGAVILP----KDCEILYLNDSKKLSASRREALYDE 62
Query: 69 LKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDT 128
+ + +V V + P + ++IN+ + ++++ + ++ + LL
Sbjct: 63 I-MEKAVAVGVGMASPARI-------DEINILQATYEAMRKAVEQLSVVPDLL------- 107
Query: 129 VGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW--IFEETAE 186
+ DA ++ P + K D+ ++ AS++AKVTRDR + + I E
Sbjct: 108 LNDAVTIPEMPYRQVPIV------KGDAKSVSIAAASVIAKVTRDRLMMQYDKILPEYGF 161
Query: 187 NMHRNFGS 194
++ +GS
Sbjct: 162 AQNKGYGS 169
>gi|385785664|ref|YP_005816773.1| Ribonuclease HII [Erwinia sp. Ejp617]
gi|310764936|gb|ADP09886.1| Ribonuclease HII [Erwinia sp. Ejp617]
Length = 207
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 82/161 (50%), Gaps = 25/161 (15%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I G+DE GRGP++G +V + S + DSK L E++R L++++K + ++
Sbjct: 12 IAGVDEVGRGPLVGAVVTAAVILDPSR----PIVGLGDSKKLSEKRRLALYDEIK-DKAL 66
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
W++ +P E+ +++N I H + + + V G+ LT ++ G+
Sbjct: 67 SWSLGRAEPEEI-------DRLN---ILHATMLAMQRAV--AGLHLTPDFVLIDGNRCPA 114
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTL 176
A PS V K DSL P +S ASI+AKVTRDR +
Sbjct: 115 LA-----MPSRAVV---KGDSLVPEISAASIMAKVTRDREM 147
>gi|348029848|ref|YP_004872534.1| ribonuclease H [Glaciecola nitratireducens FR1064]
gi|347947191|gb|AEP30541.1| ribonuclease H [Glaciecola nitratireducens FR1064]
Length = 213
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 84/188 (44%), Gaps = 39/188 (20%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+ G+DE GRGP++G +V + L ADSK L E+KR EL +K N ++
Sbjct: 19 VAGVDEVGRGPLVGDVVTAAVIL----DPKRPILGLADSKKLSEKKRNELAVLIKQN-AL 73
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
W++ A +L +++N I H + + + V + I V +D
Sbjct: 74 SWSIG-------RANVLEIDQLN---ILHATMLAMQRAVEGLNIQPEHVLVD-------- 115
Query: 136 QAKLSQRFPSIKFVVSK--KADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG 193
R P + K D+L+P +S ASI+AKVTRD + T N + ++G
Sbjct: 116 ----GNRCPPWSYSSHAVVKGDALFPQISAASIIAKVTRDDEMV------TLHNQYPHYG 165
Query: 194 ----SGYP 197
GYP
Sbjct: 166 FAAHKGYP 173
>gi|164655638|ref|XP_001728948.1| hypothetical protein MGL_3942 [Malassezia globosa CBS 7966]
gi|159102836|gb|EDP41734.1| hypothetical protein MGL_3942 [Malassezia globosa CBS 7966]
Length = 86
Score = 60.1 bits (144), Expect = 1e-06, Method: Composition-based stats.
Identities = 23/38 (60%), Positives = 29/38 (76%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFA 52
C +G+DEAGRGPVLGP+VYG YCP Q+ L ++ FA
Sbjct: 40 CALGVDEAGRGPVLGPLVYGIAYCPMDMQEHLRSMGFA 77
>gi|383188852|ref|YP_005198980.1| ribonuclease HII [Rahnella aquatilis CIP 78.65 = ATCC 33071]
gi|371587110|gb|AEX50840.1| ribonuclease HII [Rahnella aquatilis CIP 78.65 = ATCC 33071]
Length = 198
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 76/162 (46%), Gaps = 25/162 (15%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
CI G+DE GRGP++G +V + + ADSK L E++RE L+ ++K +
Sbjct: 12 CIAGVDEVGRGPLVGAVVTAAVI----LDPANPIVGLADSKKLSEKRREALYIEIK-EKA 66
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
+ W++ +P E+ +++N I H + + + V + I V +D
Sbjct: 67 LAWSLGRAEPHEI-------DELN---ILHATMLAMQRAVAGLCITPDMVLID------- 109
Query: 135 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTL 176
+ P V K DS +S ASI+AKVTRDR +
Sbjct: 110 --GNRCPKLPMASLAVV-KGDSKVAEISAASILAKVTRDREM 148
>gi|309805705|ref|ZP_07699745.1| ribonuclease HII [Lactobacillus iners LactinV 09V1-c]
gi|309806745|ref|ZP_07700739.1| ribonuclease HII [Lactobacillus iners LactinV 03V1-b]
gi|312873998|ref|ZP_07734034.1| ribonuclease HII [Lactobacillus iners LEAF 2052A-d]
gi|312875510|ref|ZP_07735513.1| ribonuclease HII [Lactobacillus iners LEAF 2053A-b]
gi|315653520|ref|ZP_07906441.1| ribonuclease HII [Lactobacillus iners ATCC 55195]
gi|349611414|ref|ZP_08890650.1| ribonuclease HII [Lactobacillus sp. 7_1_47FAA]
gi|308164958|gb|EFO67201.1| ribonuclease HII [Lactobacillus iners LactinV 09V1-c]
gi|308166860|gb|EFO69045.1| ribonuclease HII [Lactobacillus iners LactinV 03V1-b]
gi|311089021|gb|EFQ47462.1| ribonuclease HII [Lactobacillus iners LEAF 2053A-b]
gi|311090547|gb|EFQ48955.1| ribonuclease HII [Lactobacillus iners LEAF 2052A-d]
gi|315489211|gb|EFU78852.1| ribonuclease HII [Lactobacillus iners ATCC 55195]
gi|348608736|gb|EGY58706.1| ribonuclease HII [Lactobacillus sp. 7_1_47FAA]
Length = 250
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 94/220 (42%), Gaps = 41/220 (18%)
Query: 10 WASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFE-- 67
W N + G+DE GRGP+ GP+V + + ++ DSK L +KR ELF
Sbjct: 63 WCQNKLVAGVDEVGRGPLAGPVVTAAVIL----DKNFDLIDVNDSKKLTPKKRNELFPMI 118
Query: 68 -DLKVNDSVGWA-VDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVY 125
D V SVG A D+ID KIN+ E + + V + + +
Sbjct: 119 LDKAVCVSVGLANNDLID------------KINIYEADR---VAMARAVKGLKVKPDALL 163
Query: 126 LDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETA 185
+D + + P +K + + DS ++ ASIVAKV RDR + + E
Sbjct: 164 VDAMD--------VPVDLPQLKLI---RGDSKSNSIAAASIVAKVFRDRLMDAY--GELY 210
Query: 186 ENMHRNFGSGYPGDHKHII----FGFPSLVRFSWGTCTSH 221
+GY G KH+ +G + RFS+ +S+
Sbjct: 211 PEYDFAHNAGY-GTAKHLSALKQYGPTPIHRFSFEPVSSY 249
>gi|317046996|ref|YP_004114644.1| ribonuclease H [Pantoea sp. At-9b]
gi|316948613|gb|ADU68088.1| Ribonuclease H [Pantoea sp. At-9b]
Length = 208
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 86/187 (45%), Gaps = 35/187 (18%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
I G+DE GRGP++G +V + + ADSK L E++R L++++K +
Sbjct: 11 LIAGVDEVGRGPLVGAVVTAAVIL----DPAQPIIGLADSKKLSEKRRLALYDEIK-EKA 65
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
+ W++ +P E+ ++IN I H + + + V + ++ V +D
Sbjct: 66 LAWSLGRAEPEEI-------DQIN---ILHATMLAMQRAVAGLPLVPDFVLID------- 108
Query: 135 YQAKLSQRFPSIKFVVSK--KADSLYPVVSGASIVAKVTRDRTLRGW--IFEETAENMHR 190
R P++ K DSL +S ASI+AKVTRDR + +F + H+
Sbjct: 109 -----GNRCPALPMPSQAVVKGDSLVAEISAASILAKVTRDREMAELDALFPQYGFAQHK 163
Query: 191 NFGSGYP 197
GYP
Sbjct: 164 ----GYP 166
>gi|281422598|ref|ZP_06253597.1| ribonuclease HII [Prevotella copri DSM 18205]
gi|281403268|gb|EFB33948.1| ribonuclease HII [Prevotella copri DSM 18205]
Length = 215
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 66/218 (30%), Positives = 90/218 (41%), Gaps = 40/218 (18%)
Query: 18 GIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGW 77
G DEAGRG + G + + P YQ A LN DSK L ++KR+ L E ++ D+V W
Sbjct: 27 GCDEAGRGCLAGSVYAAAVILPPGYQN--AELN--DSKKLTDKKRKALREQIE-RDAVAW 81
Query: 78 AVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQA 137
AV I+ P E+ +KIN +LN L LD + +
Sbjct: 82 AVGIVTPEEI-------DKIN---------------ILNASFLAMHRALDQLKVRPEAVI 119
Query: 138 KLSQRFPSIK---FVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGS 194
RF K + K D Y ++ ASI+AK RD + E + N
Sbjct: 120 VDGNRFKPYKDLPYTTIVKGDGKYMAIAAASILAKTYRDDYMDALAEEYPQYDWKGN--K 177
Query: 195 GYPG-DHKHII--FGFPSLVRFSW-----GTCTSHFKD 224
GYP H+ I FG R S+ G + FKD
Sbjct: 178 GYPTKKHRAAIREFGVTPYHRMSYNLLGTGELSIDFKD 215
>gi|424787769|ref|ZP_18214533.1| ribonuclease HII family protein [Streptococcus intermedius BA1]
gi|422113523|gb|EKU17261.1| ribonuclease HII family protein [Streptococcus intermedius BA1]
Length = 255
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 87/180 (48%), Gaps = 26/180 (14%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDE GRGP+ GP+V + P + + + LN DSK + ++K E +++++ + ++
Sbjct: 72 IAGIDEVGRGPLAGPVVAAAVILPKNSK--IKGLN--DSKKISKKKHETIYQEV-LKQAI 126
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
+ I D + + +++N+ E + + +I V N+ I + +D +
Sbjct: 127 AIGIGIKDNQVI-------DEVNIYEA---TKLAMIEAVGNLKITPQHLLIDAM------ 170
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 195
KL + P + K D+ ++ ASIVAKVTRDR + + + N G G
Sbjct: 171 --KLDLQIPQTSII---KGDANSLSIAAASIVAKVTRDRMMTDYDLTYPGYDFAHNVGYG 225
>gi|163856833|ref|YP_001631131.1| ribonuclease HII [Bordetella petrii DSM 12804]
gi|163260561|emb|CAP42863.1| rnhB [Bordetella petrii]
Length = 187
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 80/184 (43%), Gaps = 31/184 (16%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+ G+DEAGRGP+ G G ADSK L E+REEL ++ ++
Sbjct: 1 MAGVDEAGRGPLAG----GVYAAAVILDPGRPVDGLADSKVLTAERREELAAHIQ-ERAL 55
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
W V SA +L + +N +L +L + +D +G A +
Sbjct: 56 AWCV-------ASATVLEIDTLN---------------ILRATLLAMQRAVDGLGQAPQV 93
Query: 136 QAKLSQRFPSIKFVVSK--KADSLYPVVSGASIVAKVTRDRTLRGW--IFEETAENMHRN 191
+ P+++ V K D+L P +S ASI+AK RD L+ ++ + + H+
Sbjct: 94 AMVDGNQAPTLRCTVQTVIKGDALVPAISAASILAKTARDADLQRLHALYPQYGFDQHKG 153
Query: 192 FGSG 195
+G+
Sbjct: 154 YGTA 157
>gi|37524687|ref|NP_928031.1| ribonuclease HII [Photorhabdus luminescens subsp. laumondii TTO1]
gi|39932267|sp|Q7N8N3.1|RNH2_PHOLL RecName: Full=Ribonuclease HII; Short=RNase HII
gi|36784112|emb|CAE12981.1| Ribonuclease HII (RNase HII) [Photorhabdus luminescens subsp.
laumondii TTO1]
Length = 196
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 83/185 (44%), Gaps = 31/185 (16%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I G+DE GRGP++G +V + + ADSK L E++RE L+ ++ ++
Sbjct: 11 IAGVDEVGRGPLVGAVVTAAVIL----DPLQPIVGLADSKKLSEKRREALYLEI-TEKAL 65
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
W++ +P E+ +++N I H + + + V N+ I V +D
Sbjct: 66 CWSLGRAEPAEI-------DQLN---ILHATMLAMQRAVANLPISPEYVLID-------- 107
Query: 136 QAKLSQRFPSIKFVVSK--KADSLYPVVSGASIVAKVTRDRTLR--GWIFEETAENMHRN 191
R P + K D L +S ASIVAKVTRDR + +F E H+
Sbjct: 108 ----GNRCPKLPMPAQAVIKGDGLVAEISAASIVAKVTRDREMAELDQLFPEYGFAKHKG 163
Query: 192 FGSGY 196
+ + +
Sbjct: 164 YPTAF 168
>gi|406920543|gb|EKD58590.1| ribonuclease HII [uncultured bacterium]
Length = 242
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 64/238 (26%), Positives = 99/238 (41%), Gaps = 54/238 (22%)
Query: 15 CIMGIDEAGRGPVLGPMVYGC--------LYCPCSYQQTLATLNFADSKTLKEEKREELF 66
CI+G DE GRGP+ GP V C P Q+ + DSK L E++R+E+F
Sbjct: 19 CIIGTDEVGRGPLCGP-VLACAAMFKDPSFEIPAEKQKQFDLIR--DSKKLSEKQRDEIF 75
Query: 67 EDLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNE---ISHDSAIGLITRVLN------- 116
+ +N+ + + D + ++IN+ E +S AI + R++N
Sbjct: 76 D--FINEHFHVGIGLCDHETI-------DRINILEASFLSMKKAIQDLQRIMNLESKNKG 126
Query: 117 --IGILLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDR 174
IG ++ + + D K LS S+ D L +S ASI+AKVTRDR
Sbjct: 127 EKIGPMINDSKFLILVDGNKEIPNLSMEQYSV-----IGGDKLVKSISAASIMAKVTRDR 181
Query: 175 TLRGWIFEETAENMHRNFGSGYPGDHKHIIFGFPSLVRF----SWGTCTSHFKDIVEV 228
+ MH+ + HK G+ + V ++G C H K V
Sbjct: 182 IMH---------EMHQKYPQYGLDKHK----GYGTKVHMEALEAFGPCPIHRKSFAPV 226
>gi|315427583|dbj|BAJ49182.1| ribonuclease HII [Candidatus Caldiarchaeum subterraneum]
Length = 212
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 50/89 (56%), Gaps = 2/89 (2%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+ G+DEAGRG V+GP+V + L L ADSKTL +REE+FE L+ + V
Sbjct: 2 LCGVDEAGRGCVVGPLVVAAVAAERDELPLLRALGVADSKTLSPRRREEIFEKLRASFRV 61
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISH 104
G+ ++ PR +S+ + LN++ +
Sbjct: 62 GYM--LVSPRRISSCLRVNGGDGLNDLEY 88
>gi|325290406|ref|YP_004266587.1| RNase HII [Syntrophobotulus glycolicus DSM 8271]
gi|324965807|gb|ADY56586.1| RNase HII [Syntrophobotulus glycolicus DSM 8271]
Length = 227
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 89/185 (48%), Gaps = 35/185 (18%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+ G+DEAGRGP+ GP++ P S+ L LN DSK L +RE+LFE +K + +
Sbjct: 37 VAGVDEAGRGPLAGPVIAAACILPESFD--LPYLN--DSKKLTARRREDLFERIK-DQAS 91
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
+AV ++ E+ +++N I H S + + + + I V +D +
Sbjct: 92 AYAVAGVEAEEI-------DRMN---ILHASKLAMKKAIEALHIPPGYVLVDGRDE---- 137
Query: 136 QAKLSQRFPSIKFVVSKKA----DSLYPVVSGASIVAKVTRDRTLRG--WIFEETAENMH 189
I V +KA D+ ++ SI+AKVTRDR + ++ + A + H
Sbjct: 138 ----------IDIVCRQKAVIGGDAKCACIAAGSILAKVTRDRIMDDLHMLYPQYAFDKH 187
Query: 190 RNFGS 194
+ +G+
Sbjct: 188 KGYGT 192
>gi|167586869|ref|ZP_02379257.1| ribonuclease HII [Burkholderia ubonensis Bu]
Length = 214
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 62/217 (28%), Positives = 97/217 (44%), Gaps = 42/217 (19%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+ G+DEAGRGP+ GP+V + Q + L+ DSK L +KR+ L+E L V S
Sbjct: 28 VCGVDEAGRGPLAGPVVAAAVIL--DPAQPIDGLD--DSKALSAKKRDALYE-LIVARSR 82
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
+ V SA + ++I+ I H + + + V + ++ T +D
Sbjct: 83 AYCV-------ASASV---DEIDTLNILHATMLAMKRAVEGLAVVPTLAQID-------- 124
Query: 136 QAKLSQRFP--SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW--IFEETAENMHRN 191
R P S++ D+L P +S ASI+AKVTRDR L F N+H
Sbjct: 125 ----GNRCPTLSVRAEAIVSGDALVPSISAASILAKVTRDRMLVDLHERFPVYGFNVHAG 180
Query: 192 FGSGYPGDHKHIIFGFPSLVRFSWGTCTSHFKDIVEV 228
+G+ KH+ + +R G C +H + V
Sbjct: 181 YGTA-----KHL-----AALR-EHGPCEAHRRSFAPV 206
>gi|329921301|ref|ZP_08277739.1| ribonuclease HII [Lactobacillus iners SPIN 1401G]
gi|328934593|gb|EGG31097.1| ribonuclease HII [Lactobacillus iners SPIN 1401G]
Length = 250
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 94/220 (42%), Gaps = 41/220 (18%)
Query: 10 WASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFE-- 67
W N + G+DE GRGP+ GP+V + + ++ DSK L +KR ELF
Sbjct: 63 WCQNKLVAGVDEVGRGPLAGPVVTAAVIL----DKNFDLIDVNDSKKLTPKKRNELFPMI 118
Query: 68 -DLKVNDSVGWA-VDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVY 125
D V SVG A D+ID KIN+ E + + V + + +
Sbjct: 119 LDKAVCVSVGLANNDLID------------KINIYEADR---VAMARAVKGLKVKPDALL 163
Query: 126 LDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETA 185
+D + + P +K + + DS ++ ASIVAKV RDR + + E
Sbjct: 164 VDAMD--------VPVDLPQLKLI---RGDSKSNSIAAASIVAKVFRDRLMDAY--GELY 210
Query: 186 ENMHRNFGSGYPGDHKHII----FGFPSLVRFSWGTCTSH 221
+GY G KH+ +G + RFS+ +S+
Sbjct: 211 PEYDFAHNAGY-GTAKHLSALKQYGPTPIHRFSFEPVSSY 249
>gi|259907556|ref|YP_002647912.1| Ribonuclease HII [Erwinia pyrifoliae Ep1/96]
gi|387870313|ref|YP_005801683.1| protein rnhB [Erwinia pyrifoliae DSM 12163]
gi|224963178|emb|CAX54662.1| Ribonuclease HII [Erwinia pyrifoliae Ep1/96]
gi|283477396|emb|CAY73312.1| rnhB [Erwinia pyrifoliae DSM 12163]
Length = 207
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 82/161 (50%), Gaps = 25/161 (15%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I G+DE GRGP++G +V + S + DSK L E++R L++++K + ++
Sbjct: 12 IAGVDEVGRGPLVGAVVTAAVILDPSR----PIVGLGDSKKLSEKRRLALYDEIK-DRAL 66
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
W++ +P E+ +++N I H + + + V G+ LT ++ G+
Sbjct: 67 SWSLGRAEPEEI-------DRLN---ILHATMLAMQRAV--AGLHLTPDFVLIDGNRCPQ 114
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTL 176
A PS V K DSL P +S ASI+AKVTRDR +
Sbjct: 115 LA-----MPSRAVV---KGDSLVPEISAASIMAKVTRDREM 147
>gi|421527423|ref|ZP_15974025.1| ribonuclease HII [Fusobacterium nucleatum ChDC F128]
gi|402256458|gb|EJU06938.1| ribonuclease HII [Fusobacterium nucleatum ChDC F128]
Length = 213
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 90/181 (49%), Gaps = 22/181 (12%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
++G+DEAGRGP+ GP+V + Y + L +N DSK L E+KRE+L++ + N V
Sbjct: 15 VIGVDEAGRGPLAGPVVAAAVMLK-EYTEELDEIN--DSKKLTEKKREKLYDVIMKNFDV 71
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
+ ++ ++ N +N + ++ A+ + + N + Y V K
Sbjct: 72 AVGISTVE------EIDKLNILNADFLAMRRALNDLKSIRN-----EKEYTVLVDGNLKI 120
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW--IFEETAENMHRNFG 193
+ + ++FP + K D+ ++ ASI+AKVTRDR ++ + + H+ +G
Sbjct: 121 KEYVGKQFPIV------KGDAKSLSIAAASIIAKVTRDRFMKDLASTYPDYCFEKHKGYG 174
Query: 194 S 194
+
Sbjct: 175 T 175
>gi|309809305|ref|ZP_07703174.1| ribonuclease HII [Lactobacillus iners SPIN 2503V10-D]
gi|325911988|ref|ZP_08174390.1| ribonuclease HII [Lactobacillus iners UPII 143-D]
gi|308170418|gb|EFO72442.1| ribonuclease HII [Lactobacillus iners SPIN 2503V10-D]
gi|325476173|gb|EGC79337.1| ribonuclease HII [Lactobacillus iners UPII 143-D]
Length = 250
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 94/220 (42%), Gaps = 41/220 (18%)
Query: 10 WASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFE-- 67
W N + G+DE GRGP+ GP+V + + ++ DSK L +KR ELF
Sbjct: 63 WCQNKLVAGVDEVGRGPLAGPVVTAAVIL----DKNFDLIDVNDSKKLTPKKRNELFPMI 118
Query: 68 -DLKVNDSVGWA-VDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVY 125
D V SVG A D+ID KIN+ E + + V + + +
Sbjct: 119 LDKAVCVSVGLANNDLID------------KINIYEADR---VAMARAVKGLKVKPDALL 163
Query: 126 LDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETA 185
+D + + P +K + + DS ++ ASIVAKV RDR + + E
Sbjct: 164 VDAMD--------VPVDLPQLKLI---RGDSKSNSIAAASIVAKVFRDRLMDAY--GELY 210
Query: 186 ENMHRNFGSGYPGDHKHII----FGFPSLVRFSWGTCTSH 221
+GY G KH+ +G + RFS+ +S+
Sbjct: 211 PEYDFAHNAGY-GTAKHLSALKQYGPTPIHRFSFEPVSSY 249
>gi|309804177|ref|ZP_07698255.1| ribonuclease HII [Lactobacillus iners LactinV 11V1-d]
gi|308163760|gb|EFO66029.1| ribonuclease HII [Lactobacillus iners LactinV 11V1-d]
Length = 250
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 94/220 (42%), Gaps = 41/220 (18%)
Query: 10 WASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFE-- 67
W N + G+DE GRGP+ GP+V + + ++ DSK L +KR ELF
Sbjct: 63 WCQNKLVAGVDEVGRGPLAGPVVTAAVIL----DKNFDLIDVNDSKKLTPKKRNELFPMI 118
Query: 68 -DLKVNDSVGWA-VDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVY 125
D V SVG A D+ID KIN+ E + + V + + +
Sbjct: 119 LDKAVCVSVGLANNDLID------------KINIYEADR---VAMARAVKGLKVKPDALL 163
Query: 126 LDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETA 185
+D + + P +K + + DS ++ ASIVAKV RDR + + E
Sbjct: 164 VDAMD--------VPVDLPQLKLI---RGDSKSNSIAAASIVAKVFRDRLMDAY--GELY 210
Query: 186 ENMHRNFGSGYPGDHKHII----FGFPSLVRFSWGTCTSH 221
+GY G KH+ +G + RFS+ +S+
Sbjct: 211 PEYDFAHNAGY-GTAKHLSALKQYGPTPIHRFSFEPVSSY 249
>gi|428170387|gb|EKX39312.1| hypothetical protein GUITHDRAFT_143524 [Guillardia theta CCMP2712]
Length = 225
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 79/189 (41%), Gaps = 30/189 (15%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQ-------QTLATLN-FADSKTLKEEKREELFE 67
+ G+DE GRGP+ GP+V + P Q + L L+ DSK L E +REE+FE
Sbjct: 58 VAGVDEVGRGPLAGPVVAAAVILPREAQGEVGVDGEALEYLDQLDDSKKLSERQREEVFE 117
Query: 68 DLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLD 127
L + V WAV+ R++ A G I ++
Sbjct: 118 KLTQDPRVVWAVEFKSNRDIDA-------------------GNILACAEAAMVSCTAATP 158
Query: 128 TVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAEN 187
A+ + + + P+ V K D L ++ ASI+AKVTRDR + + N
Sbjct: 159 PSLPADGNRVPKALKVPAEPIV---KGDGLCCNIAAASIIAKVTRDRFMNDAHEKWPEYN 215
Query: 188 MHRNFGSGY 196
+N G Y
Sbjct: 216 FLKNKGLPY 224
>gi|309775665|ref|ZP_07670664.1| ribonuclease HII [Erysipelotrichaceae bacterium 3_1_53]
gi|308916571|gb|EFP62312.1| ribonuclease HII [Erysipelotrichaceae bacterium 3_1_53]
Length = 207
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 82/186 (44%), Gaps = 34/186 (18%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
CI+GIDEAGRGP+ GP+V + P Y DSK L ++KR LF+D+ ++ +
Sbjct: 18 CIVGIDEAGRGPIAGPLVVAAVAFPPGYFHE----EIYDSKKLSDKKRRALFQDV-IHQA 72
Query: 75 VGWAVDIIDPR---ELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGD 131
+ + II+P EL+ +N + A G++T + + +V GD
Sbjct: 73 KEYHIAIIEPAIIDELNIYRATQNAMQTLSEQFSMADGVLTDAMPLPGNTKDVISLVKGD 132
Query: 132 AEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRN 191
Q +S ++ ASI+AKVTRD + + + R+
Sbjct: 133 ----QKSVS--------------------IAAASILAKVTRDCIMEAYDKQYPQYGFARH 168
Query: 192 FGSGYP 197
GYP
Sbjct: 169 --KGYP 172
>gi|422957476|ref|ZP_16969690.1| ribonuclease HII [Escherichia coli H494]
gi|371598093|gb|EHN86907.1| ribonuclease HII [Escherichia coli H494]
Length = 198
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 89/192 (46%), Gaps = 33/192 (17%)
Query: 10 WASNPCIMGIDEAGRGPVLGPMVYGCLYC-PCSYQQTLATLNFADSKTLKEEKREELFED 68
+ + G+DE GRGP++G +V + P + +A LN DSK L E++R L+E+
Sbjct: 6 YPHTQLVAGVDEVGRGPLVGAVVTAAVILDPV---RPIAGLN--DSKKLSEKRRLALYEE 60
Query: 69 LKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDT 128
+K ++ W++ +P E+ +++N I H + + + V + I V +D
Sbjct: 61 IK-EKALSWSLGRAEPHEI-------DELN---ILHATMLAMQRAVAGLHIAPEYVLID- 108
Query: 129 VGDAEKYQAKLSQRFPSIKF--VVSKKADSLYPVVSGASIVAKVTRDRTLRGW--IFEET 184
R P + + K DS P +S ASI+AKVTRD + +F +
Sbjct: 109 -----------GNRCPKLPMPAMAVVKGDSRVPEISAASILAKVTRDAEMAALDIVFPQY 157
Query: 185 AENMHRNFGSGY 196
H+ + + +
Sbjct: 158 GFAQHKGYPTAF 169
>gi|336392850|ref|ZP_08574249.1| ribonuclease HII (RNase HII) [Lactobacillus coryniformis subsp.
torquens KCTC 3535]
Length = 252
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 78/170 (45%), Gaps = 26/170 (15%)
Query: 10 WASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL 69
W + P I GIDE GRGP+ GP+V + P + A + DSK L KR+ L+ +
Sbjct: 64 WPNYPQIAGIDEVGRGPLAGPVVTAAVILPHDF----AVYDVNDSKQLSATKRQLLYRQI 119
Query: 70 KVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 129
+ +V ++ + D + +++N+ E + + + + + + + +D V
Sbjct: 120 -LEQAVSVSIGVSD-------VATIDRVNILEATK---LAMSQAIAGLSVPPDHLLIDAV 168
Query: 130 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW 179
KL+ P+I K DS ++ ASIVAKV RD + +
Sbjct: 169 --------KLNTDIPTISMF---KGDSHSISIAAASIVAKVVRDHLMLAY 207
>gi|146328634|ref|YP_001209596.1| ribonuclease HII [Dichelobacter nodosus VCS1703A]
gi|189043593|sp|A5EV63.1|RNH2_DICNV RecName: Full=Ribonuclease HII; Short=RNase HII
gi|146232104|gb|ABQ13082.1| ribonuclease HII [Dichelobacter nodosus VCS1703A]
Length = 189
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 95/213 (44%), Gaps = 32/213 (15%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I G+DEAGRG +G +V + P Y + DSK L KRE L + ++
Sbjct: 2 IAGVDEAGRGAWIGNVVAAAVILPNDYDLP----DLTDSKKLSAAKRERLCAAI-YEQAI 56
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
A P E+ +++N I + + + V+ + + TEV +D K+
Sbjct: 57 AVACAWCSPEEI-------DQLN---IHYATLCAMKKAVITLKVAPTEVLIDG-----KF 101
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW--IFEETAENMHRNFG 193
+L FP+ + D+L P +S ASIVAKVTRD+ + ++ + H+ +G
Sbjct: 102 APELP--FPTRTII---GGDALEPAISAASIVAKVTRDKQMIALDALYPDYGFAAHKGYG 156
Query: 194 SGYPGDHKHII--FGFPSLVRFSWGTCTSHFKD 224
+ H+ + FG L R S+ + K+
Sbjct: 157 T---QKHQQALRQFGVLPLHRRSYAPIAALLKN 186
>gi|365096697|ref|ZP_09331140.1| ribonuclease HII [Acidovorax sp. NO-1]
gi|363413723|gb|EHL20915.1| ribonuclease HII [Acidovorax sp. NO-1]
Length = 208
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 97/232 (41%), Gaps = 49/232 (21%)
Query: 4 EAALPKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKRE 63
+A LP W + G+DEAGRGP+ GP+V + ADSK L +RE
Sbjct: 13 QACLP-WHPPGLVAGVDEAGRGPLAGPVVAAAVI----LDDLHPIAGLADSKKLTPARRE 67
Query: 64 ELFEDLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTE 123
+L+++++ + L + + ++ ++ A L R +G+ L
Sbjct: 68 KLYDEIRA-------------KALCCSIAEASVEEIDRLNILQATMLAMRRAVMGLRLKP 114
Query: 124 VYLDTVGDAEKYQAKLSQRFPS--IKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIF 181
V + G+ R P+ I+ K D+L P +S ASI+AKV RDR W
Sbjct: 115 VMVLVDGN----------RLPTLDIQSEAIVKGDALVPAISAASILAKVHRDR----WCA 160
Query: 182 EETAENMHRNFGS-GYPGDHKHIIFGFPSLVRFS----WGTCTSHFKDIVEV 228
+ +H F G+ G HK G+ + V + G C H + V
Sbjct: 161 Q-----IHEEFPQYGFDG-HK----GYGTAVHMAALREHGACVHHRRSFAPV 202
>gi|333394923|ref|ZP_08476742.1| ribonuclease HII (RNase HII) [Lactobacillus coryniformis subsp.
coryniformis KCTC 3167]
Length = 252
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 78/170 (45%), Gaps = 26/170 (15%)
Query: 10 WASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL 69
W + P I GIDE GRGP+ GP+V + P + A + DSK L KR+ L+ +
Sbjct: 64 WPNYPQIAGIDEVGRGPLAGPVVTAAVILPHDF----AVYDVNDSKQLSATKRQLLYRQI 119
Query: 70 KVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 129
+ +V ++ I D + +++N+ E + + + + + + + +D V
Sbjct: 120 -LEQAVSVSIGISD-------VATIDRVNILEATK---LTMSQAIAGLSVPPDHLLIDAV 168
Query: 130 GDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW 179
KL+ P+I K DS ++ ASIVAKV RD + +
Sbjct: 169 --------KLNTDIPTISMF---KGDSHSISIAAASIVAKVVRDHLMLAY 207
>gi|420318658|ref|ZP_14820518.1| ribonuclease HII [Shigella flexneri 2850-71]
gi|391255501|gb|EIQ14649.1| ribonuclease HII [Shigella flexneri 2850-71]
Length = 198
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 88/187 (47%), Gaps = 35/187 (18%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
+ G+DE GRGP++G +V + + + +A LN DSK L E++R L+E++K +
Sbjct: 11 LVAGVDEVGRGPLVGAVVTAAVILDPA--RPIAGLN--DSKKLSEKRRLALYEEIK-EKA 65
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
+ W++ +P E+ +++N I H + + + V + I V +D
Sbjct: 66 LSWSLGRAEPHEI-------DELN---ILHATMLAMQRAVAGLHIAPEYVLID------- 108
Query: 135 YQAKLSQRFPSIKF--VVSKKADSLYPVVSGASIVAKVTRDRTLRGW--IFEETAENMHR 190
R P + + K DS P +S ASI+AKVTRD + +F + H+
Sbjct: 109 -----GNRCPKLPMPAMAVVKGDSRVPEISAASILAKVTRDAEMAALDIVFPQYGFAQHK 163
Query: 191 NFGSGYP 197
GYP
Sbjct: 164 ----GYP 166
>gi|301025937|ref|ZP_07189421.1| ribonuclease HII [Escherichia coli MS 69-1]
gi|419918928|ref|ZP_14437100.1| ribonuclease HII [Escherichia coli KD2]
gi|300395736|gb|EFJ79274.1| ribonuclease HII [Escherichia coli MS 69-1]
gi|388388999|gb|EIL50542.1| ribonuclease HII [Escherichia coli KD2]
Length = 198
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 89/183 (48%), Gaps = 27/183 (14%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+ G+DE GRGP++G +V + S + +A LN DSK L E++R L E++K ++
Sbjct: 12 VAGVDEVGRGPLVGAVVTAAVILDPS--RPIAGLN--DSKKLSEKRRLALCEEIK-EKAL 66
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
W++ +P E+ +++N I H + + + V + I V +D
Sbjct: 67 SWSLGRAEPHEI-------DELN---ILHATMLAMQRAVAGLHIAPEYVLIDG-----NR 111
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW--IFEETAENMHRNFG 193
KL PS+ V K DS P +S ASI+AKVTRD + +F + H+ +
Sbjct: 112 CPKLP--MPSMAVV---KGDSRVPEISAASILAKVTRDAEMAALDIVFPQYGFAQHKGYP 166
Query: 194 SGY 196
+ +
Sbjct: 167 TAF 169
>gi|82542782|ref|YP_406729.1| ribonuclease HII [Shigella boydii Sb227]
gi|417680406|ref|ZP_12329793.1| ribonuclease HII family protein [Shigella boydii 3594-74]
gi|420351057|ref|ZP_14852260.1| ribonuclease HII [Shigella boydii 4444-74]
gi|97189266|sp|Q325V7.1|RNH2_SHIBS RecName: Full=Ribonuclease HII; Short=RNase HII
gi|81244193|gb|ABB64901.1| RNAse HII [Shigella boydii Sb227]
gi|332098751|gb|EGJ03711.1| ribonuclease HII family protein [Shigella boydii 3594-74]
gi|391289891|gb|EIQ48375.1| ribonuclease HII [Shigella boydii 4444-74]
Length = 198
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 87/185 (47%), Gaps = 31/185 (16%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+ G+DE GRGP++G +V + + +A LN DSK L E++R L E++K ++
Sbjct: 12 VAGVDEVGRGPLVGAVVTAAVIL--DPARPIAGLN--DSKKLSEKRRLALCEEIK-EKAL 66
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
W++ +P E+ +++N I H + + + V + I V +D
Sbjct: 67 SWSLGRAEPHEI-------DELN---ILHATMLAMQRAVAGLHIAPEYVLID-------- 108
Query: 136 QAKLSQRFPSIKF--VVSKKADSLYPVVSGASIVAKVTRDRTLRGW--IFEETAENMHRN 191
R P + +V K DS P +S ASI+AKVTRD + +F + H+
Sbjct: 109 ----GNRCPKLPMPAMVVVKGDSRVPEISAASILAKVTRDAEMAALDIVFPQYGFAQHKG 164
Query: 192 FGSGY 196
+ + +
Sbjct: 165 YPTAF 169
>gi|372276089|ref|ZP_09512125.1| ribonuclease HII [Pantoea sp. SL1_M5]
Length = 208
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 87/187 (46%), Gaps = 35/187 (18%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
I G+DE GRGP++G +V + + T ADSK L E++R L++++K +
Sbjct: 11 LIAGVDEVGRGPLVGAVVTAAVILDPANPIT----GLADSKKLSEKRRLALYDEIK-EKA 65
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
+ W++ +P E+ +++N I H + + + V +GI V +D
Sbjct: 66 LAWSLGRAEPEEI-------DQLN---ILHATMLAMQRAVAGLGIQPDYVLID------- 108
Query: 135 YQAKLSQRFPSIKFVVSK--KADSLYPVVSGASIVAKVTRDRTLR--GWIFEETAENMHR 190
R P++ K DSL +S ASI+AKV+RD+ + +F + H+
Sbjct: 109 -----GNRCPALPMPSQAVVKGDSLVAEISAASIIAKVSRDQEMTELDLLFPQYGFAQHK 163
Query: 191 NFGSGYP 197
GYP
Sbjct: 164 ----GYP 166
>gi|225568157|ref|ZP_03777182.1| hypothetical protein CLOHYLEM_04231 [Clostridium hylemonae DSM
15053]
gi|225163110|gb|EEG75729.1| hypothetical protein CLOHYLEM_04231 [Clostridium hylemonae DSM
15053]
Length = 219
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 82/162 (50%), Gaps = 27/162 (16%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDE GRGP+ GP+V G + P + L DSK L E+KRE L++++ + +V
Sbjct: 39 ICGIDEVGRGPLAGPVVAGAVILP----KDDPVLYLNDSKKLSEKKREMLYDEI-MEKAV 93
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSA-IGLITRVLNIGILLTEVYLDTVGDAEK 134
+ I+ P+ + ++IN+ + ++++ + + + ILL + T+ E
Sbjct: 94 ATGIGIVGPQRI-------DEINILQATYEAMRMAIADLPVQPDILLNDAV--TIPGVEI 144
Query: 135 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTL 176
Q P I K D+ ++ ASI+AKVTRDR +
Sbjct: 145 LQ------VPII------KGDAKSVSIAAASIIAKVTRDRLM 174
>gi|325912821|ref|ZP_08175199.1| ribonuclease HII [Lactobacillus iners UPII 60-B]
gi|325477814|gb|EGC80948.1| ribonuclease HII [Lactobacillus iners UPII 60-B]
Length = 250
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 94/220 (42%), Gaps = 41/220 (18%)
Query: 10 WASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFE-- 67
W N + G+DE GRGP+ GP+V + + ++ DSK L +KR ELF
Sbjct: 63 WCQNKLVAGVDEVGRGPLAGPVVTAAVIL----DKNFDLIDVNDSKKLTPKKRNELFPMI 118
Query: 68 -DLKVNDSVGWA-VDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVY 125
D V SVG A D+ID KIN+ E + + V + + +
Sbjct: 119 LDKAVCVSVGLANNDLID------------KINIYEADR---VAMARAVKGLKVKPDALL 163
Query: 126 LDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETA 185
+D + + P +K + + DS ++ ASIVAKV RDR + + E
Sbjct: 164 VDAMD--------VPVDLPQLKLI---RGDSKSNSIAAASIVAKVFRDRLMDAY--GELY 210
Query: 186 ENMHRNFGSGYPGDHKHII----FGFPSLVRFSWGTCTSH 221
+GY G KH+ +G + RFS+ +S+
Sbjct: 211 PEYDFAHNAGY-GTAKHLSALKQYGPTPIHRFSFEPVSSY 249
>gi|288573052|ref|ZP_06391409.1| Ribonuclease H [Dethiosulfovibrio peptidovorans DSM 11002]
gi|288568793|gb|EFC90350.1| Ribonuclease H [Dethiosulfovibrio peptidovorans DSM 11002]
Length = 194
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 82/188 (43%), Gaps = 29/188 (15%)
Query: 13 NPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVN 72
+P G+DEAGRGP+ GP+V + L + DSK + +RE++F L
Sbjct: 4 SPVFAGVDEAGRGPMAGPVVAAAAILTEEQSERLVSAGLRDSKKMTPLRREKVFS-LMGE 62
Query: 73 DSVGWAVDIIDPRELSAKMLNKNKINLNEIS----HDSAIGLITRVLNIGILLTEVYLDT 128
V WA +A + +KIN+ + S L +R+ + G+L+
Sbjct: 63 LGVIWAAQ-------AASVERIDKINILRATLWAMRRSVERLPSRLFD-GVLVD------ 108
Query: 129 VGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW--IFEETAE 186
GD E QR V D +YP +S AS+VAKV RDR + ++
Sbjct: 109 -GDKEIPDLIWPQR-------VCPHGDDVYPQISAASVVAKVLRDRAMVALDRLYPAYGF 160
Query: 187 NMHRNFGS 194
H+ +G+
Sbjct: 161 ASHKGYGT 168
>gi|296327674|ref|ZP_06870216.1| ribonuclease H [Fusobacterium nucleatum subsp. nucleatum ATCC
23726]
gi|296155205|gb|EFG95980.1| ribonuclease H [Fusobacterium nucleatum subsp. nucleatum ATCC
23726]
Length = 213
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 91/181 (50%), Gaps = 22/181 (12%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
++G+DEAGRGP+ GP+V + Y + L +N DSK L E+KRE+L++ + N V
Sbjct: 19 VIGVDEAGRGPLAGPVVAAAVILK-EYTEELDEIN--DSKKLTEKKREKLYDIIMKNFDV 75
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
+ ++ ++ N +N + ++ A+ + + N + Y V K
Sbjct: 76 AVGISTVE------EIDKLNILNADFLAMRRALKDLKSLKN-----EKEYTVLVDGNLKI 124
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW--IFEETAENMHRNFG 193
+ + ++ P + K D+ ++ ASI+AKVTRDR ++ I+ + + H+ +G
Sbjct: 125 KEYIGKQLPIV------KGDAKSLSIAAASIIAKVTRDRLMKDLANIYPDYSFEKHKGYG 178
Query: 194 S 194
+
Sbjct: 179 T 179
>gi|19704706|ref|NP_604268.1| ribonuclease HII [Fusobacterium nucleatum subsp. nucleatum ATCC
25586]
gi|39932432|sp|Q8RDX3.1|RNH2_FUSNN RecName: Full=Ribonuclease HII; Short=RNase HII
gi|19715020|gb|AAL95567.1| Ribonuclease HII [Fusobacterium nucleatum subsp. nucleatum ATCC
25586]
Length = 215
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 90/181 (49%), Gaps = 22/181 (12%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
++G+DEAGRGP+ GP+V + Y + L +N DSK L E+KRE+L++ + N V
Sbjct: 21 VIGVDEAGRGPLAGPVVAAAVILK-EYTEELDEIN--DSKKLTEKKREKLYDIIMKNFDV 77
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
+ ++ + N +N + ++ A+ + + N + Y V K
Sbjct: 78 AVGISTVEEID------KLNILNADFLAMRRALKDLKSLKN-----EKEYTVLVDGNLKI 126
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW--IFEETAENMHRNFG 193
+ + ++ P + K D+ ++ ASI+AKVTRDR ++ I+ + + H+ +G
Sbjct: 127 KEYIGKQLPIV------KGDAKSLSIAAASIIAKVTRDRLMKDLANIYPDYSFEKHKGYG 180
Query: 194 S 194
+
Sbjct: 181 T 181
>gi|417606113|ref|ZP_12256646.1| ribonuclease HII family protein [Escherichia coli STEC_DG131-3]
gi|345366281|gb|EGW98373.1| ribonuclease HII family protein [Escherichia coli STEC_DG131-3]
Length = 198
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 87/185 (47%), Gaps = 31/185 (16%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+ G+DE GRGP++G +V + + + +A LN DSK L E++R L E++K ++
Sbjct: 12 VAGVDEVGRGPLVGAVVTAAVILDPA--RPIAGLN--DSKKLSEKRRLALCEEIK-EKAL 66
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
W++ +P E+ +K+N I H + + + V + I V +D
Sbjct: 67 SWSLGRAEPHEI-------DKLN---ILHATMLAMQRAVAGLHIAPEYVLID-------- 108
Query: 136 QAKLSQRFPSIKF--VVSKKADSLYPVVSGASIVAKVTRDRTLRGW--IFEETAENMHRN 191
R P + + K DS P +S ASI+AKVTRD + +F + H+
Sbjct: 109 ----GNRCPKLPMPAMAVVKGDSRVPEISAASILAKVTRDAEMAALDIVFPQYGFAQHKG 164
Query: 192 FGSGY 196
+ + +
Sbjct: 165 YPTAF 169
>gi|332527884|ref|ZP_08403921.1| ribonuclease HII [Rubrivivax benzoatilyticus JA2]
gi|332112461|gb|EGJ12254.1| ribonuclease HII [Rubrivivax benzoatilyticus JA2]
Length = 214
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 61/225 (27%), Positives = 89/225 (39%), Gaps = 46/225 (20%)
Query: 10 WASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL 69
W + G+DEAG GP+ GP+V + Q +A L ADSK L +RE LF+++
Sbjct: 18 WHPPGLVAGVDEAGCGPLAGPVVAAAVI--LDDQAPIAGL--ADSKALSARQRERLFDEI 73
Query: 70 KVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 129
+S + + +I+ I H + + V + +L V +D
Sbjct: 74 HARALC-----------VSIALASVEEIDTLNILHARLLAMKRAVETLRLLPKRVMVD-- 120
Query: 130 GDAEKYQAKLSQRFPSIKFVVSK--KADSLYPVVSGASIVAKVTRDRTLRGWIFEETAEN 187
R P ++F D+ P +S ASIVAKV RDR AE
Sbjct: 121 ----------GNRLPVLRFPAEAVVGGDAKVPAISAASIVAKVHRDRL--------CAEL 162
Query: 188 MHRNFGSGYPGDHKHIIFGFPSLVRFS----WGTCTSHFKDIVEV 228
R G+ G HK G+P+ V G C H + V
Sbjct: 163 HARWPDYGFDG-HK----GYPTRVHLDALRRLGACPEHRRSFAPV 202
>gi|293408275|ref|ZP_06652115.1| ribonuclease HII [Escherichia coli B354]
gi|331671689|ref|ZP_08372487.1| ribonuclease HII [Escherichia coli TA280]
gi|432856992|ref|ZP_20084243.1| ribonuclease HII [Escherichia coli KTE144]
gi|291472526|gb|EFF15008.1| ribonuclease HII [Escherichia coli B354]
gi|331071534|gb|EGI42891.1| ribonuclease HII [Escherichia coli TA280]
gi|431395500|gb|ELG79012.1| ribonuclease HII [Escherichia coli KTE144]
Length = 198
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 89/183 (48%), Gaps = 27/183 (14%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+ G+DE GRGP++G +V + S + +A LN DSK L E++R L E++K ++
Sbjct: 12 VAGVDEVGRGPLVGAVVTAAVILDPS--RPIAGLN--DSKKLSEKRRLALCEEIK-EKAL 66
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
W++ +P E+ +++N I H + + + V + I V +D
Sbjct: 67 SWSLGRAEPHEI-------DELN---ILHATMLAMQRAVAGLHIAPEYVLIDG-----NR 111
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW--IFEETAENMHRNFG 193
KL PS+ V K DS P +S ASI+AKVTRD + +F + H+ +
Sbjct: 112 CPKLP--MPSMAVV---KGDSRVPEISAASILAKVTRDAEMAALDIVFPQYGFAQHKGYP 166
Query: 194 SGY 196
+ +
Sbjct: 167 TAF 169
>gi|194335200|ref|YP_002016994.1| ribonuclease HII [Pelodictyon phaeoclathratiforme BU-1]
gi|238693361|sp|B4SAK8.1|RNH2_PELPB RecName: Full=Ribonuclease HII; Short=RNase HII
gi|194307677|gb|ACF42377.1| Ribonuclease H [Pelodictyon phaeoclathratiforme BU-1]
Length = 206
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 83/191 (43%), Gaps = 23/191 (12%)
Query: 8 PKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATL-NFADSKTLKEEKREELF 66
P W + + GIDEAGRGP+ GP+V + P ++ L DSK L +RE L
Sbjct: 8 PLWQTTALVCGIDEAGRGPLAGPVVAAAVIFPRWFRPVGTILERVNDSKKLSAAERELLA 67
Query: 67 EDLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYL 126
++ N + WAV +DP + N + ++ + A+ + + +LL
Sbjct: 68 PAIR-NAAAFWAVAEVDPETID----QINILQATMLAMNQAVAALP--IQPELLLV---- 116
Query: 127 DTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAE 186
D +++ +L I + K DS ++ AS++AK RD + + E
Sbjct: 117 ----DGNRFRTEL-----PIPYETVVKGDSKVFSIAAASVLAKTHRDELMVAYASEYPQY 167
Query: 187 NMHRNFGSGYP 197
R+ GYP
Sbjct: 168 GFERHV--GYP 176
>gi|423070344|ref|ZP_17059120.1| ribonuclease HII [Streptococcus intermedius F0413]
gi|355365705|gb|EHG13425.1| ribonuclease HII [Streptococcus intermedius F0413]
Length = 255
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 87/180 (48%), Gaps = 26/180 (14%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDE GRGP+ GP+V + P + + + LN DSK + ++K E +++++ + ++
Sbjct: 72 IAGIDEVGRGPLAGPVVAAAVILPKNSK--IKDLN--DSKKISKKKHETIYQEV-LKQAI 126
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
+ I D + + +++N+ E + + +I V N+ I + +D +
Sbjct: 127 AIGIGIKDNQVI-------DEVNIYEA---TKLAMIEAVGNLKITPQHLLIDAM------ 170
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 195
KL + P + K D+ ++ ASIVAKVTRDR + + + N G G
Sbjct: 171 --KLDLQIPQTSII---KGDANSLSIAAASIVAKVTRDRMMTDYDLTYPDYDFAHNVGYG 225
>gi|113868020|ref|YP_726509.1| ribonuclease HII [Ralstonia eutropha H16]
gi|123133958|sp|Q0KA30.1|RNH2_RALEH RecName: Full=Ribonuclease HII; Short=RNase HII
gi|113526796|emb|CAJ93141.1| Ribonuclease HII [Ralstonia eutropha H16]
Length = 238
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 75/175 (42%), Gaps = 32/175 (18%)
Query: 8 PKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFE 67
P A+ + G+DEAGRGP+ GP+ + ADSK L KRE+L+E
Sbjct: 17 PAAAAVQRLCGVDEAGRGPLAGPVYAAAVI----LDPKRPIRGLADSKILTAAKREQLYE 72
Query: 68 DLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNI---GILLTEV 124
+ ++GW + +I+ I H S + + V + GI+ V
Sbjct: 73 KI-CERALGWHI----------AFATVEEIDTLNILHASMLAMQRAVQGLAASGIVPDLV 121
Query: 125 YLDTVGDAEKYQAKLSQRFPSIKFVVSK--KADSLYPVVSGASIVAKVTRDRTLR 177
+D R P + F V + D+L +S ASI+AKV RDR LR
Sbjct: 122 QVD------------GNRCPRVPFPVEAIVQGDALVKAISAASILAKVARDRELR 164
>gi|398795124|ref|ZP_10555039.1| ribonuclease HII [Pantoea sp. YR343]
gi|398206955|gb|EJM93711.1| ribonuclease HII [Pantoea sp. YR343]
Length = 208
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 87/188 (46%), Gaps = 37/188 (19%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYC-PCSYQQTLATLNFADSKTLKEEKREELFEDLKVND 73
I G+DE GRGP++G +V + P + + ADSK L E++R L++++K
Sbjct: 11 LIAGVDEVGRGPLVGAVVTAAVILDPAN-----PIVGLADSKKLSEKRRLALYDEIK-EK 64
Query: 74 SVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAE 133
++ W++ +P E+ +++N I H + + + V + I V +D
Sbjct: 65 ALAWSLGRAEPEEI-------DQLN---ILHATMLAMQRAVAGLHIAPDFVLID------ 108
Query: 134 KYQAKLSQRFPSIKFVVSK--KADSLYPVVSGASIVAKVTRDRTLR--GWIFEETAENMH 189
R P++ K DSL +S ASI+AKVTRDR + +F + H
Sbjct: 109 ------GNRCPALPMPSQAVVKGDSLVKEISAASIIAKVTRDREMAELDLLFPQYGFAQH 162
Query: 190 RNFGSGYP 197
+ GYP
Sbjct: 163 K----GYP 166
>gi|150021773|ref|YP_001307127.1| ribonuclease HII [Thermosipho melanesiensis BI429]
gi|189043672|sp|A6LP91.1|RNH2_THEM4 RecName: Full=Ribonuclease HII; Short=RNase HII
gi|149794294|gb|ABR31742.1| Ribonuclease H [Thermosipho melanesiensis BI429]
Length = 216
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 62/232 (26%), Positives = 106/232 (45%), Gaps = 41/232 (17%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVND- 73
+ G+DEAGRGP+ GP+V + DSK L ++REELF ++ N
Sbjct: 2 IVAGVDEAGRGPLFGPVVASAVVLKKE------IYGITDSKKLTLKQREELFMEIIRNSY 55
Query: 74 -SVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
+G+A S+++ N ++ E++ + A+ ++ R + ++L +
Sbjct: 56 FGIGFAS--------SSEIDKLNILHATELAMNRALAMLERKIRFDMVLVD--------- 98
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWI--FEETAENMHR 190
L + S K +V K D L +S ASI+AKV RD+ + + F A H+
Sbjct: 99 ---GKNLKLDYKS-KCIV--KGDVLIKEISAASIIAKVVRDKIMTFYSKKFSNYALEKHK 152
Query: 191 NFGSGYPG-DHKHII--FGFPSLVRFSWGTCTSHFK-DIVEVLWESDEMDED 238
GYP DH +I +G R ++ T + +E ++SD +DE+
Sbjct: 153 ----GYPTKDHIKLIEKYGLTPEHRLTFKPITKMLSINKLEEWYKSDIIDEE 200
>gi|340757888|ref|ZP_08694480.1| ribonuclease HII [Fusobacterium varium ATCC 27725]
gi|340577702|gb|EES64711.2| ribonuclease HII [Fusobacterium varium ATCC 27725]
Length = 237
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 84/162 (51%), Gaps = 21/162 (12%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I+G+DEAGRGP+ GP+V + Y L +N DSK L E+KRE+L++ +K + +
Sbjct: 52 IIGVDEAGRGPLAGPVVAAAVKIK-DYNSELDEIN--DSKQLSEKKREKLYDVVKEHFYI 108
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
G + + D +E+ ++IN I + + + + + N+ + YL V K
Sbjct: 109 G--IGVADSKEI-------DEIN---ILNATFLAMRRALENLKKECSGEYLVLVDGNFKI 156
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLR 177
+ ++ P I K D ++ ASI+AKVTRDR +R
Sbjct: 157 REYKGRQEPVI------KGDGKSLSIAAASIIAKVTRDRIMR 192
>gi|259046715|ref|ZP_05737116.1| ribonuclease HII [Granulicatella adiacens ATCC 49175]
gi|259036611|gb|EEW37866.1| ribonuclease HII [Granulicatella adiacens ATCC 49175]
Length = 256
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 89/196 (45%), Gaps = 43/196 (21%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
I GIDE GRGP+ GP+V + P + + + DSK L ++REE+FE +K +
Sbjct: 73 MIAGIDEVGRGPLAGPVVAAAVILP----EGMEDIGLDDSKKLSAKRREEIFEMIK-EQA 127
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNE---ISHDSAIGLITRVLNIGILLTEVYLDTVGD 131
V + I+D +KIN+ E ++ AI L+ + +L+ + LDT
Sbjct: 128 VAIGIGIVDA-------FTIDKINIYEASKVAMKRAIELLPEQPDY-LLIDAMRLDT--- 176
Query: 132 AEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRN 191
P + K D+ ++ ASIVAK RD+ ++ + E ++
Sbjct: 177 ----------GIPQEGII---KGDAKSISIAAASIVAKEVRDQMMKDY------EQLYPG 217
Query: 192 FG----SGYPGDHKHI 203
+G +GY G HI
Sbjct: 218 YGFAQNAGY-GTKAHI 232
>gi|172040491|ref|YP_001800205.1| hypothetical protein cur_0811 [Corynebacterium urealyticum DSM
7109]
gi|171851795|emb|CAQ04771.1| unnamed protein product [Corynebacterium urealyticum DSM 7109]
Length = 241
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 88/213 (41%), Gaps = 46/213 (21%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+ G+DEAGRG GP+ P LA LN DSK L ++RE LF + +V
Sbjct: 41 VAGVDEAGRGACCGPITIASCILPDHGVPELAGLN--DSKKLTPKRRERLFGAI-TEHAV 97
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
+ + I E+ + + IN G+ V +G+ V D V E
Sbjct: 98 AYEIVHIPAAEIDQRGIQYANIN----------GMYRVVAGLGVEPDVVLTDAVHLPEL- 146
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENM------- 188
+ P +K D+L P +S ASI+AKV+RDR + E AE
Sbjct: 147 ---ACEHAPLVK------GDALSPAISAASILAKVSRDR-----LMVEMAEKYPGYGLAG 192
Query: 189 HRNFGSGYPGDHKHIIFGFPSLVRFSWGTCTSH 221
H+ +G+ KH+ + VR G C H
Sbjct: 193 HKGYGTA-----KHM-----AAVRL-HGACPEH 214
>gi|91762761|ref|ZP_01264726.1| Ribonuclease HII (RNase HII) [Candidatus Pelagibacter ubique
HTCC1002]
gi|91718563|gb|EAS85213.1| Ribonuclease HII (RNase HII) [Candidatus Pelagibacter ubique
HTCC1002]
Length = 186
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 90/195 (46%), Gaps = 40/195 (20%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
+ G+DE GRG ++GP+ + S + L DSKTL ++KREEL + +K N
Sbjct: 3 ILAGVDEVGRGSLIGPVYAAAIILNNSIDKKL----LKDSKTLTKDKREELEKYIKKNSI 58
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLD--TVGDA 132
WA+ +E+ KIN I S + + +L + + V +D + D
Sbjct: 59 --WAIGQASTKEIE-------KIN---ILQASLLAMKRAILKLKTKPSLVLIDGNKLPDL 106
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF 192
+ Y+ +K+V+ K D P +S ASIVAKV+RD+ F N+
Sbjct: 107 KNYK---------LKYVI--KGDQKIPSISAASIVAKVSRDK------FITKLSKKFNNY 149
Query: 193 G----SGYPGDHKHI 203
G SGY G +H+
Sbjct: 150 GWDTNSGY-GTKEHL 163
>gi|295098996|emb|CBK88085.1| RNase HII [Eubacterium cylindroides T2-87]
Length = 202
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 102/216 (47%), Gaps = 44/216 (20%)
Query: 10 WASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL 69
W + ++GIDEAGRGP+ GP+V + +++ DSK L E+KRE LF L
Sbjct: 11 WNLHQDVLGIDEAGRGPIAGPLVVAGV----CFEKGFTNEMIDDSKKLTEKKREALFS-L 65
Query: 70 KVNDSVGWAVDIIDPRELSAKMLNK-NKINLNEISHDSAIGLITRVLNIGILLTEVYLDT 128
N+++ + + +I+ + + K + + + + EI+H++ + ++
Sbjct: 66 ITNEALWYQILVIEEKIIDKKNIYRTTQEAMLEIAHNAPVDIV----------------- 108
Query: 129 VGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENM 188
+ DA + L + + S+ K D ++ ASI+AKVTRDR ++ + +
Sbjct: 109 LSDAMPLPS-LDKEWESV-----IKGDQKSLSIAAASILAKVTRDRYMK------KLDEL 156
Query: 189 HRNFG----SGYPGDHKHI----IFGFPSLVRFSWG 216
+ +G GYP HI I+G R S+G
Sbjct: 157 YPMYGFSKHKGYPT-KAHIEALNIYGVLDCHRRSYG 191
>gi|433446046|ref|ZP_20410177.1| ribonuclease HII [Anoxybacillus flavithermus TNO-09.006]
gi|432000791|gb|ELK21683.1| ribonuclease HII [Anoxybacillus flavithermus TNO-09.006]
Length = 259
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 86/193 (44%), Gaps = 41/193 (21%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I G+DE GRGP+ GP+V + P Q + + DSK L E KRE+LF ++ ++
Sbjct: 74 IAGVDEVGRGPLAGPVVAAAVILP----QDVFLPHLDDSKKLSETKREQLFSVIQ-QTAL 128
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
+ I+ E+ +++N+ E + + ++ V + I + +D +
Sbjct: 129 AIGIGIVSAHEI-------DELNIYEATKKA---MMQAVHALAIAPEHLLIDAM------ 172
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 195
+ P + K D+ ++ +SI+AKVTRDR M + G
Sbjct: 173 --HIPLSIPQTSII---KGDAHSVSIAASSIIAKVTRDR-------------MMKQLGEK 214
Query: 196 YP--GDHKHIIFG 206
YP G KH+ +G
Sbjct: 215 YPQYGFEKHMGYG 227
>gi|429728182|ref|ZP_19262922.1| ribonuclease HII [Peptostreptococcus anaerobius VPI 4330]
gi|429150373|gb|EKX93287.1| ribonuclease HII [Peptostreptococcus anaerobius VPI 4330]
Length = 266
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 82/190 (43%), Gaps = 33/190 (17%)
Query: 10 WASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL 69
A + GIDE GRGP+ GP+V + ++ DSK + E+KREEL+ DL
Sbjct: 77 LAGYQLVAGIDEVGRGPLAGPVVAAVVIL----KKGTKIRGINDSKKIPEKKREELY-DL 131
Query: 70 KVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITR----VLNIGILLTEVY 125
++ ++ + + + P E+ N +N I+ AI + +LN + + V
Sbjct: 132 ILDQALDYGIGMASPSEID----EHNILNATYIAMRRAIDKLKYRPDCLLNDAVRIPGVD 187
Query: 126 LDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETA 185
+ V P I K DS + ASIVAKVTRDR + + E
Sbjct: 188 IHQV--------------PII------KGDSKSISIGAASIVAKVTRDRMMYDYDKEYPG 227
Query: 186 ENMHRNFGSG 195
N N G G
Sbjct: 228 YNFSSNKGYG 237
>gi|398801964|ref|ZP_10561195.1| ribonuclease HII [Pantoea sp. GM01]
gi|398090646|gb|EJL81113.1| ribonuclease HII [Pantoea sp. GM01]
Length = 208
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 87/187 (46%), Gaps = 37/187 (19%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYC-PCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
I G+DE GRGP++G +V + P + ADSK L E++R L++++K +
Sbjct: 12 IAGVDEVGRGPLVGAVVTAAVILDPAN-----PIAGLADSKKLSEKRRLALYDEIK-EKA 65
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
+ W++ +P E+ +++N I H + + + V + + V +D
Sbjct: 66 LAWSLGRAEPEEI-------DQLN---ILHATMLAMQRAVAGLPVAPDFVLID------- 108
Query: 135 YQAKLSQRFPSIKF--VVSKKADSLYPVVSGASIVAKVTRDRTLR--GWIFEETAENMHR 190
R P++ + K DSL +S ASI+AKVTRDR + +F E H+
Sbjct: 109 -----GNRCPALPMPSLAVVKGDSLVREISAASIIAKVTRDREMAELDLLFPEYGFAQHK 163
Query: 191 NFGSGYP 197
GYP
Sbjct: 164 ----GYP 166
>gi|290473671|ref|YP_003466543.1| RNAse HII [Xenorhabdus bovienii SS-2004]
gi|289172976|emb|CBJ79747.1| RNAse HII [Xenorhabdus bovienii SS-2004]
Length = 196
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 86/186 (46%), Gaps = 35/186 (18%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I G+DE GRGP++G +V + + T DSK L E++RE L+ ++K ++
Sbjct: 11 IAGVDEVGRGPLVGAVVTAAVILDPAKPIT----GLMDSKKLTEKRREALYLEIK-EKAL 65
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
W++ +P E+ +++N I H + + + V + I V +D
Sbjct: 66 CWSLGRAEPEEI-------DQLN---ILHATMLAMQRAVEGLAITPDYVLID-------- 107
Query: 136 QAKLSQRFPSIKF--VVSKKADSLYPVVSGASIVAKVTRDRTLR--GWIFEETAENMHRN 191
R P++ + K DSL +S ASI+AKVTRDR + G F + H+
Sbjct: 108 ----GNRCPALPMSALAVIKGDSLVAEISAASILAKVTRDREMAELGKQFPDYGFAQHK- 162
Query: 192 FGSGYP 197
GYP
Sbjct: 163 ---GYP 165
>gi|419621473|ref|ZP_14154725.1| ribonuclease HII [Campylobacter jejuni subsp. jejuni LMG 23216]
gi|380601783|gb|EIB22089.1| ribonuclease HII [Campylobacter jejuni subsp. jejuni LMG 23216]
Length = 191
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 90/202 (44%), Gaps = 33/202 (16%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
++GIDEAGRG + GPM+ C + L L DSK L E+KREEL+E + N +
Sbjct: 18 LIGIDEAGRGALAGPMMMA----ACKLNKKLDGL--CDSKKLSEKKREELYEIIIKNSN- 70
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
+ + + ++ A+GL T L G+ L + + T + Y
Sbjct: 71 -YLILVFSSEQI------------------DALGLST-CLKTGLKLIKKHFKTENNFL-Y 109
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGSG 195
+ IK + KADS VS ASI+AKV++DR + + +N G
Sbjct: 110 DGNTNLGINGIKTQI--KADSSILQVSAASILAKVSKDRVMNFLAKDFPCYEFEKNKAYG 167
Query: 196 YPGDHKHII--FGFPSLVRFSW 215
HK +I FG L R S+
Sbjct: 168 TKA-HKELIAKFGICKLHRKSF 188
>gi|417616524|ref|ZP_12266963.1| ribonuclease HII family protein [Escherichia coli G58-1]
gi|345383658|gb|EGX13531.1| ribonuclease HII family protein [Escherichia coli G58-1]
Length = 198
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 89/191 (46%), Gaps = 31/191 (16%)
Query: 10 WASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL 69
+ + G+DE GRGP++G +V + + + +A LN DSK L E++R L+E++
Sbjct: 6 YPHTQLVAGVDEVGRGPLVGAVVTAAVILDPA--RPIAGLN--DSKKLSEKRRLALYEEI 61
Query: 70 KVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 129
K ++ W++ +P E+ +++N I H + + + V + I V +D
Sbjct: 62 K-EKALSWSLGRAEPHEI-------DELN---ILHATMLAMQRAVAGLHIAPEYVLID-- 108
Query: 130 GDAEKYQAKLSQRFPSIKF--VVSKKADSLYPVVSGASIVAKVTRDRTLR--GWIFEETA 185
R P + + K DS P +S ASI+AKVTRD + +F +
Sbjct: 109 ----------GNRCPKLPMPAMAVVKGDSRVPEISAASILAKVTRDAEMAVLDIVFPQYG 158
Query: 186 ENMHRNFGSGY 196
H+ + + +
Sbjct: 159 FAQHKGYPTAF 169
>gi|402574089|ref|YP_006623432.1| ribonuclease HII [Desulfosporosinus meridiei DSM 13257]
gi|402255286|gb|AFQ45561.1| ribonuclease HII [Desulfosporosinus meridiei DSM 13257]
Length = 260
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 102/220 (46%), Gaps = 40/220 (18%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+ G+DEAGRGP+ GP+V G P ++ L LN DSK L E KRE+LF ++ ++
Sbjct: 75 LAGVDEAGRGPLAGPVVAGACILPAKFE--LPGLN--DSKMLTESKREKLFIQIQ-KQAI 129
Query: 76 GWAVDIIDPRELSA-KMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
+AV +P E+ A +L K+ + S GL R + +L+ + L V
Sbjct: 130 DYAVGSAEPAEIDALNILQATKLAMKR----SIEGLTIRPHH--LLIDALNLTDV----- 178
Query: 135 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW--IFEETAENMHRNF 192
+ P + + D + ++ ASI+AKVTRDR + ++ E + + ++ +
Sbjct: 179 -------QIPQLPLI---GGDRISASIAAASILAKVTRDRLMVQLHSLYPEYSFSKNKGY 228
Query: 193 GSGYPGDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWES 232
G+ DH ++ G C H K V E+
Sbjct: 229 GT---SDHMQVL--------KRLGPCPLHRKSFAPVKQET 257
>gi|262067279|ref|ZP_06026891.1| ribonuclease HII [Fusobacterium periodonticum ATCC 33693]
gi|291379005|gb|EFE86523.1| ribonuclease HII [Fusobacterium periodonticum ATCC 33693]
Length = 217
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 97/197 (49%), Gaps = 40/197 (20%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL--KVND 73
++G+DEAGRGP+ GP+V + Y + L +N DSK L E+KRE+L++ + N
Sbjct: 15 VIGVDEAGRGPLAGPVVAAAVILK-QYSEELDEIN--DSKKLTEKKREKLYDIILNNFNV 71
Query: 74 SVGWA-------VDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYL 126
+VG A ++I++ L+ + K+ +E + D + L+ L I
Sbjct: 72 AVGIASVEEIDKLNILNADFLAMRRALKDLEKFHEANKDYIV-LVDGNLKI--------- 121
Query: 127 DTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAE 186
++Y+ K + P + K D+ ++ ASI+AKVTRDR ++G +
Sbjct: 122 ------KEYEGK---QLPVV------KGDAKSLSIAAASIIAKVTRDRIMKGLGLKYPDY 166
Query: 187 NMHRNFGSGYPGDHKHI 203
+ +N GY G KH+
Sbjct: 167 DFEKN--KGY-GTKKHV 180
>gi|421082964|ref|ZP_15543843.1| Ribonuclease HII 1 [Pectobacterium wasabiae CFBP 3304]
gi|401702190|gb|EJS92434.1| Ribonuclease HII 1 [Pectobacterium wasabiae CFBP 3304]
Length = 198
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 78/164 (47%), Gaps = 29/164 (17%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
CI G+DE GRGP++G +V + S + ADSK L E++R L++++ +
Sbjct: 12 CIAGVDEVGRGPLVGAVVTAAVILDPSRP----IVGLADSKKLSEKRRLALYDEIN-EKA 66
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
+ W++ +P E+ +++N I H + + + V + I+ V +D
Sbjct: 67 LAWSLGRAEPEEI-------DQLN---ILHATMLAMQRAVAGLPIVPDFVLID------- 109
Query: 135 YQAKLSQRFPSIKFVVSK--KADSLYPVVSGASIVAKVTRDRTL 176
R P++ K DS +S ASI+AKVTRDR +
Sbjct: 110 -----GNRCPALPMRAQAVVKGDSRVAEISAASIMAKVTRDREM 148
>gi|294867798|ref|XP_002765242.1| ribonuclease hii, putative [Perkinsus marinus ATCC 50983]
gi|239865237|gb|EEQ97959.1| ribonuclease hii, putative [Perkinsus marinus ATCC 50983]
Length = 630
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 86/205 (41%), Gaps = 44/205 (21%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTL-KEEKREELFEDLKVNDS 74
++G+DEAGRGP+ GP+V +Y Q T DSKT+ EE R+ ++E L N
Sbjct: 10 VIGVDEAGRGPLCGPVVAAAVYIN---QDTYIPYGICDSKTISNEEYRDMMYEQLTNNKG 66
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
V W+V I+D + + + IN+ + + + + ++ D G K
Sbjct: 67 VKWSVGIVDNKVI-------DTINILQATFTAKTEAVLKLTK----------DGEGRKSK 109
Query: 135 YQAKLS-QRFPSIKFVVSKKADSLYPVVSGAS---------IVAKVTRDRTLRGWIFEET 184
Y + R P + P+V G S I+AKVTRDR +
Sbjct: 110 YHVLIDGNRVPPQLLNNNNINLQCTPIVKGDSKEYIIAAASIIAKVTRDRIM-------- 161
Query: 185 AENMHRNFGSGYPGDHKHIIFGFPS 209
++H N HK G+P+
Sbjct: 162 -HHIHNNIPQYNVSQHK----GYPT 181
>gi|440759544|ref|ZP_20938678.1| Ribonuclease HII [Pantoea agglomerans 299R]
gi|436426726|gb|ELP24429.1| Ribonuclease HII [Pantoea agglomerans 299R]
Length = 208
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 86/187 (45%), Gaps = 35/187 (18%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
I G+DE GRGP++G +V + + T ADSK L E++R L++++K +
Sbjct: 11 LIAGVDEVGRGPLVGAVVTAAVILDPANPIT----GLADSKKLSEKRRLALYDEIK-EKA 65
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
+ W++ +P E+ +++N I H + + + V + I V +D
Sbjct: 66 LAWSLGRAEPEEI-------DQLN---ILHATMLAMQRAVAGLSIQPDYVLID------- 108
Query: 135 YQAKLSQRFPSIKFVVSK--KADSLYPVVSGASIVAKVTRDRTLR--GWIFEETAENMHR 190
R P++ K DSL +S ASI+AKV+RDR + +F + H+
Sbjct: 109 -----GNRCPALSMPSQAVVKGDSLVAEISAASIIAKVSRDREMAELDLLFPQYGFAQHK 163
Query: 191 NFGSGYP 197
GYP
Sbjct: 164 ----GYP 166
>gi|167758983|ref|ZP_02431110.1| hypothetical protein CLOSCI_01329 [Clostridium scindens ATCC 35704]
gi|336422970|ref|ZP_08603109.1| ribonuclease HII [Lachnospiraceae bacterium 5_1_57FAA]
gi|167663390|gb|EDS07520.1| ribonuclease HII [Clostridium scindens ATCC 35704]
gi|336006816|gb|EGN36848.1| ribonuclease HII [Lachnospiraceae bacterium 5_1_57FAA]
Length = 219
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 84/168 (50%), Gaps = 39/168 (23%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDE GRGP+ GP+V G + P + + L DSK L E+KRE L+E++ + +V
Sbjct: 39 ICGIDEVGRGPLAGPVVAGAVILP----KDGSILYLNDSKKLSEKKREALYEEI-MERAV 93
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITR-------VLNIGILLTEVYLDT 128
+ I+ SA++ ++IN+ + ++++ I+ +LN + + +V
Sbjct: 94 ATGIGIVG----SARI---DEINILQATYEAMRMAISNLKVEPDLLLNDAVTIPQV---- 142
Query: 129 VGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTL 176
SI+ V K D+ ++ ASI+AKVTRDR +
Sbjct: 143 ----------------SIRQVPIIKGDAKSVSIAAASIIAKVTRDRLM 174
>gi|330719081|ref|ZP_08313681.1| ribonuclease HII [Leuconostoc fallax KCTC 3537]
Length = 254
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 83/187 (44%), Gaps = 27/187 (14%)
Query: 10 WASNPC-IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFED 68
WA + GIDE GRGP+ GP+V + P + Q ++ DSK L +KR+ L+ D
Sbjct: 66 WAKGLVNVAGIDEVGRGPLAGPVVSAAVILPHDFNQ----VDVIDSKQLSADKRDRLY-D 120
Query: 69 LKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDT 128
+ + +++ + +D + A IN+ + + + + V + I + + +D
Sbjct: 121 VIMAEALAIGIGQVDAETIDA-------INIYQAAR---LAMTQAVQQLSIPVDGLLIDA 170
Query: 129 VGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENM 188
+ +L P + K D+ + ASI+AKVTRDR + + A
Sbjct: 171 M--------QLDLDLPQESLI---KGDARSNSIGAASIIAKVTRDRLMAEYGKRYPAYGF 219
Query: 189 HRNFGSG 195
N G G
Sbjct: 220 QHNAGYG 226
>gi|308185754|ref|YP_003929885.1| ribonuclease HII [Pantoea vagans C9-1]
gi|308056264|gb|ADO08436.1| Ribonuclease HII [Pantoea vagans C9-1]
Length = 208
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 86/187 (45%), Gaps = 35/187 (18%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
I G+DE GRGP++G +V + + T ADSK L E++R L++++K +
Sbjct: 11 LIAGVDEVGRGPLVGAVVTAAVILDPANPIT----GLADSKKLSEKRRLSLYDEIK-EKA 65
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
+ W++ +P E+ +++N I H + + + V + I V +D
Sbjct: 66 LAWSLGRAEPEEI-------DQLN---ILHATMLAMQRAVAGLSIQPDYVLID------- 108
Query: 135 YQAKLSQRFPSIKFVVSK--KADSLYPVVSGASIVAKVTRDRTLR--GWIFEETAENMHR 190
R P++ K DSL +S ASI+AKV+RDR + +F + H+
Sbjct: 109 -----GNRCPALPMPSQAVVKGDSLVAEISAASIIAKVSRDREMAELDLLFPQYGFAQHK 163
Query: 191 NFGSGYP 197
GYP
Sbjct: 164 ----GYP 166
>gi|289423531|ref|ZP_06425332.1| ribonuclease HII [Peptostreptococcus anaerobius 653-L]
gi|289156033|gb|EFD04697.1| ribonuclease HII [Peptostreptococcus anaerobius 653-L]
Length = 266
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 82/190 (43%), Gaps = 33/190 (17%)
Query: 10 WASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL 69
A + GIDE GRGP+ GP+V + ++ DSK + E+KREEL+ DL
Sbjct: 77 LAGYQLVAGIDEVGRGPLAGPVVAAVVIL----KKGTKIRGINDSKKIPEKKREELY-DL 131
Query: 70 KVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITR----VLNIGILLTEVY 125
++ ++ + + + P E+ N +N I+ AI + +LN + + V
Sbjct: 132 ILDQALDYGIGMASPSEID----EHNILNATYIAMRRAIDKLKYRPDCLLNDAVRIPGVD 187
Query: 126 LDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETA 185
+ V P I K DS + ASIVAKVTRDR + + E
Sbjct: 188 IHQV--------------PII------KGDSKSISIGAASIVAKVTRDRMMYDYDKEYPG 227
Query: 186 ENMHRNFGSG 195
N N G G
Sbjct: 228 YNFSSNKGYG 237
>gi|410636572|ref|ZP_11347165.1| ribonuclease HII [Glaciecola lipolytica E3]
gi|410143854|dbj|GAC14370.1| ribonuclease HII [Glaciecola lipolytica E3]
Length = 199
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 86/187 (45%), Gaps = 35/187 (18%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
I G+DE GRGP++G +V + ++ + DSK L E+KR+ LF+++K N +
Sbjct: 6 LIAGVDEVGRGPLVGDVVTAAVILDPAH----PIVGLTDSKKLSEKKRDLLFDEIKKN-A 60
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
+ W++ P+E+ +++N I H + + + V + I V +D
Sbjct: 61 LSWSIGRASPKEI-------DELN---ILHATMLAMKRAVEGLTIQPDLVQVD------- 103
Query: 135 YQAKLSQRFP--SIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFE--ETAENMHR 190
R P S K K D +S ASI+AKVTRDR + + E N H+
Sbjct: 104 -----GNRCPDWSYKSEAIVKGDGSIAEISAASIIAKVTRDREMADLHLQYPEYGFNQHK 158
Query: 191 NFGSGYP 197
GYP
Sbjct: 159 ----GYP 161
>gi|333997686|ref|YP_004530298.1| ribonuclease HII [Treponema primitia ZAS-2]
gi|333739095|gb|AEF84585.1| ribonuclease HII [Treponema primitia ZAS-2]
Length = 203
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 95/205 (46%), Gaps = 22/205 (10%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I G+DEAGRGP+ GP+ + P + + + DSK L +EKRE + + D++
Sbjct: 2 ICGLDEAGRGPLAGPVCAAAVVLPPDFPREI----LGDSKKLSKEKREAA-RGIIMKDAL 56
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
W + D E+ + + + E + ++ ++ G+ L+ L+ + D Y
Sbjct: 57 AWGIGWADHEEIDKINILRASLLAMERAFEALAAMLAGPGGAGLPLSA--LEAIVDG-LY 113
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW--IFEETAENMHRNFG 193
+++ P I V KAD P V ASI+AK RDR + + ++ + H+
Sbjct: 114 IPEIA--IPCIALV---KADGKIPEVMAASILAKTERDREMERYAKLYPQYGYEKHK--- 165
Query: 194 SGYPGD-HKHII--FGFPSLVRFSW 215
GYP H+ + +G + R S+
Sbjct: 166 -GYPTKAHREAVLRYGPSPIQRLSF 189
>gi|410647264|ref|ZP_11357699.1| ribonuclease HII [Glaciecola agarilytica NO2]
gi|410133119|dbj|GAC06098.1| ribonuclease HII [Glaciecola agarilytica NO2]
Length = 197
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 91/197 (46%), Gaps = 42/197 (21%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
I G+DE GRGP++G +V + S + +A L ADSK + E+KR LF DL + ++
Sbjct: 4 LIAGVDEVGRGPLVGDVVTAAVILDPS--KPIAGL--ADSKKISEKKRLALF-DLIMQNA 58
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
+ +V P E+ +++N I H + + + V + I T V +D
Sbjct: 59 LSVSVGRASPEEI-------DELN---ILHATMLAMTRAVQGLAIQPTFVRVD------- 101
Query: 135 YQAKLSQRFPSIKFVVSK--KADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF 192
R P + K DSLY +S ASI+AKVTRD E TA +H +
Sbjct: 102 -----GNRCPKWNYASEAVVKGDSLYAEISAASIIAKVTRDA-------EMTA--LHEKY 147
Query: 193 GSGYPGDHKHIIFGFPS 209
G HK G+P+
Sbjct: 148 PQYGFGQHK----GYPT 160
>gi|304396658|ref|ZP_07378539.1| Ribonuclease H [Pantoea sp. aB]
gi|304356167|gb|EFM20533.1| Ribonuclease H [Pantoea sp. aB]
Length = 208
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 86/187 (45%), Gaps = 35/187 (18%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
I G+DE GRGP++G +V + + T ADSK L E++R L++++K +
Sbjct: 11 LIAGVDEVGRGPLVGAVVTAAVILDPANPIT----GLADSKKLSEKRRLALYDEIK-EKA 65
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
+ W++ +P E+ +++N I H + + + V + I V +D
Sbjct: 66 LAWSLGRAEPEEI-------DQLN---ILHATMLAMQRAVAGLSIQPDYVLID------- 108
Query: 135 YQAKLSQRFPSIKFVVSK--KADSLYPVVSGASIVAKVTRDRTLR--GWIFEETAENMHR 190
R P++ K DSL +S ASI+AKV+RDR + +F + H+
Sbjct: 109 -----GNRCPALPMPSQAVVKGDSLVAEISAASIIAKVSRDREMAELDLLFPQYGFAQHK 163
Query: 191 NFGSGYP 197
GYP
Sbjct: 164 ----GYP 166
>gi|170768530|ref|ZP_02902983.1| ribonuclease HII [Escherichia albertii TW07627]
gi|170122634|gb|EDS91565.1| ribonuclease HII [Escherichia albertii TW07627]
Length = 198
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 90/184 (48%), Gaps = 27/184 (14%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
+ G+DE GRGP++G +V + + + +A LN DSK L E++R L+E++K +
Sbjct: 11 LVAGVDEVGRGPLVGAVVTAAVILDPA--RPIAGLN--DSKKLSEKRRLALYEEIK-EKA 65
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
+ W++ +P E+ +++N I H + + + V + I V +D
Sbjct: 66 LSWSLGRAEPHEI-------DELN---ILHATMLAMQRAVAGLHIAPEYVLIDG-----N 110
Query: 135 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW--IFEETAENMHRNF 192
KL PS+ V K DS P +S ASI+AKVTRD + ++ + H+ +
Sbjct: 111 RCPKLP--VPSMAVV---KGDSRVPEISAASILAKVTRDAEMAALDTVYPQYGFAQHKGY 165
Query: 193 GSGY 196
+ +
Sbjct: 166 PTAF 169
>gi|294102509|ref|YP_003554367.1| Ribonuclease H [Aminobacterium colombiense DSM 12261]
gi|293617489|gb|ADE57643.1| Ribonuclease H [Aminobacterium colombiense DSM 12261]
Length = 195
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 67/215 (31%), Positives = 101/215 (46%), Gaps = 32/215 (14%)
Query: 13 NPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVN 72
N I G+DEAGRGP+ GP+V + S LA L DSK L KRE++F+ + V+
Sbjct: 3 NRVIAGVDEAGRGPLAGPVVAAAVVLTPSQLDALAALGLNDSKKLTPLKREKIFKAM-VS 61
Query: 73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
V W PR + +++N+ + + + ++R +N L V+ + + D
Sbjct: 62 LGVAWRAQAASPRRI-------DQMNILQ----ATLWAMSRSVN---KLPHVFEEVIVDG 107
Query: 133 EKYQAKLSQRFPSIKFVVSK---KADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMH 189
S P ++ K K DSL P V+ AS+VAKV RDR + N
Sbjct: 108 -------SVLIPGLRSYPQKAIPKGDSLVPEVAAASVVAKVLRDRAMVALDMAYPQYNFA 160
Query: 190 RNFGSGYPG-DHKHII--FGFPSLVR--FSWGTCT 219
++ GYP DH+ I FG + R F+W T +
Sbjct: 161 KH--KGYPTEDHRRRITEFGLSPIHRRSFTWKTVS 193
>gi|383816429|ref|ZP_09971827.1| ribonuclease HII [Serratia sp. M24T3]
gi|383294734|gb|EIC83070.1| ribonuclease HII [Serratia sp. M24T3]
Length = 202
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 86/184 (46%), Gaps = 31/184 (16%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I G+DE GRGP++G +V + + ADSK L E++RE L++++K ++
Sbjct: 13 IAGVDEVGRGPLVGDVVTAAVIL----DPARPIIGLADSKKLSEKRREFLYQEIK-EKAL 67
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
W + DP E+ +++N I H + + + V + + V +D G+
Sbjct: 68 AWCIGRADPAEI-------DELN---ILHATMLAMQRAVAGLAVTPDFVLID--GNRCPT 115
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTL--RGWIFEETAENMHRNFG 193
A SQ P +K DS +S ASI+AKVTRDR + F E H+
Sbjct: 116 LAMPSQ--PVVK------GDSRVAEISAASILAKVTRDREMVELDLAFPEYGFAKHK--- 164
Query: 194 SGYP 197
GYP
Sbjct: 165 -GYP 167
>gi|312898597|ref|ZP_07757987.1| ribonuclease HII [Megasphaera micronuciformis F0359]
gi|310620516|gb|EFQ04086.1| ribonuclease HII [Megasphaera micronuciformis F0359]
Length = 266
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 81/166 (48%), Gaps = 29/166 (17%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDEAGRGPV GP+ + P + + LN DSK + ++REELF D +N+++
Sbjct: 77 IAGIDEAGRGPVAGPVTIAAVILPI--RPLIYGLN--DSKKVSHKRREELF-DTIMNEAI 131
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDT--VGDAE 133
AV I+ ++ I+ +I H + + T V + I V +D + D E
Sbjct: 132 --AVSCIN--------FSEADIDRYDIYHATQRAMYTAVKTLDISPQAVLIDAMPLPDLE 181
Query: 134 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW 179
Y + +V A S ++ ASI+AKVTRDR + +
Sbjct: 182 IYH----------ESIVGGDAQS--QSIAAASIIAKVTRDRIMEEY 215
>gi|323691868|ref|ZP_08106122.1| ribonuclease [Clostridium symbiosum WAL-14673]
gi|323504075|gb|EGB19883.1| ribonuclease [Clostridium symbiosum WAL-14673]
Length = 219
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 91/189 (48%), Gaps = 28/189 (14%)
Query: 9 KWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFED 68
K+ I GIDEAGRGP+ GP+V P + L DSK L E +REELF +
Sbjct: 25 KYEEYSVICGIDEAGRGPLAGPVVAAAAVLP----KDAVILWLNDSKKLSERRREELFLE 80
Query: 69 LKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRV-LNIGILLTEVYLD 127
++ +V + V I+ P + ++IN+ + ++++ ++++ I L + +
Sbjct: 81 IR-EKAVAYGVGIVSPAVI-------DEINILQATYEAMRQAVSQLPAEPDIFLNDAVM- 131
Query: 128 TVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW--IFEETA 185
G +K Q ++ K D+ ++ AS++AKVTRD + + ++ E
Sbjct: 132 IPGIDDKKQVRII------------KGDAKSVSIAAASVLAKVTRDHMMEEYDKLYPEYG 179
Query: 186 ENMHRNFGS 194
H+ +G+
Sbjct: 180 FAKHKGYGT 188
>gi|238926779|ref|ZP_04658539.1| ribonuclease HII [Selenomonas flueggei ATCC 43531]
gi|238885311|gb|EEQ48949.1| ribonuclease HII [Selenomonas flueggei ATCC 43531]
Length = 259
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 62/213 (29%), Positives = 96/213 (45%), Gaps = 38/213 (17%)
Query: 13 NPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVN 72
N + GIDEAGRGP+ GP+ + P Q L DSK L E+ REEL+E + V+
Sbjct: 63 NCIVAGIDEAGRGPLAGPVAVAAVILP----QEYLLLRLNDSKKLSEKVREELYETI-VS 117
Query: 73 DSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
D+V + V++ID + +++N+ E + + +L EV +D V
Sbjct: 118 DAVSYHVELIDAETI-------DRMNILEATRRGMYDAVAALLPTP---QEVLIDAVA-- 165
Query: 133 EKYQAKLSQRFPSIKFVVSK--KADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHR 190
P ++ K D+ ++ ASI+AKVTRDR + + E +
Sbjct: 166 ----------LPRLRMASQSIVKGDAKSASIAAASILAKVTRDRLMLTYDKEYPVYGFAQ 215
Query: 191 NFGSGYPGDHKHIIFGFPSLVRFSWGTCTSHFK 223
+ GY G +HI +R +G C H K
Sbjct: 216 H--KGY-GTREHI-----EAIR-KYGICPLHRK 239
>gi|355627811|ref|ZP_09049442.1| ribonuclease HII [Clostridium sp. 7_3_54FAA]
gi|354820136|gb|EHF04562.1| ribonuclease HII [Clostridium sp. 7_3_54FAA]
Length = 219
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 91/189 (48%), Gaps = 28/189 (14%)
Query: 9 KWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFED 68
K+ I GIDEAGRGP+ GP+V P + L DSK L E +REELF +
Sbjct: 25 KYEEYSVICGIDEAGRGPLAGPVVAAAAVLP----KDAVILWLNDSKKLSERRREELFLE 80
Query: 69 LKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRV-LNIGILLTEVYLD 127
++ +V + V I+ P + ++IN+ + ++++ ++++ I L + +
Sbjct: 81 IR-EKAVAYGVGIVSPAVI-------DEINILQATYEAMRQAVSQLPAEPDIFLNDAVM- 131
Query: 128 TVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW--IFEETA 185
G +K Q ++ K D+ ++ AS++AKVTRD + + ++ E
Sbjct: 132 IPGIDDKKQVRII------------KGDAKSVSIAAASVLAKVTRDHMMEEYDKLYPEYG 179
Query: 186 ENMHRNFGS 194
H+ +G+
Sbjct: 180 FAKHKGYGT 188
>gi|50365354|ref|YP_053779.1| ribonuclease HII, primer excision [Mesoplasma florum L1]
gi|50363910|gb|AAT75895.1| Ribonuclease HII, primer excision [Mesoplasma florum L1]
Length = 208
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 86/179 (48%), Gaps = 27/179 (15%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I G DEAGRG + GP+V + P Y+ L DSK L +++RE L E++K + ++
Sbjct: 22 ISGSDEAGRGAMAGPVVVASVILPKDYKNCL----IRDSKKLSKKQRESLCEEIK-SVAI 76
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
+A++II+ E+ +LN + S IG+ ++N+ +D
Sbjct: 77 SYAIEIIEADEVD--ILNPKQA--------SRIGMTKSIMNLKPKPDLCLIDA------- 119
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW--IFEETAENMHRNF 192
+ + Q + F+ K D L ++ ASI+AK TRD + + I+ E H+ +
Sbjct: 120 ENIIIQEYVCAPFI---KGDDLSQSIAAASILAKTTRDNIMLDYAKIYPEYNFESHKGY 175
>gi|153854846|ref|ZP_01996069.1| hypothetical protein DORLON_02074 [Dorea longicatena DSM 13814]
gi|149752548|gb|EDM62479.1| ribonuclease HII [Dorea longicatena DSM 13814]
Length = 194
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 81/168 (48%), Gaps = 39/168 (23%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I GIDE GRGP GP+V G + P + L DSK L E+KRE L++++ + +V
Sbjct: 14 ICGIDEVGRGPFAGPVVAGAVILP----KDDPILYLNDSKKLSEKKREALYDEI-MERAV 68
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDS---AIGLIT----RVLNIGILLTEVYLDT 128
+ ++ P + ++IN+ + ++++ AIG + +LN + + EV
Sbjct: 69 ATGIGVVSPARI-------DEINILQATYEAMRMAIGNLKVQPDLLLNDAVTIPEV---- 117
Query: 129 VGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTL 176
P + + K D+ ++ ASI+AKVTRDR +
Sbjct: 118 -------------EIPQVPII---KGDAKSVSIAAASIIAKVTRDRLM 149
>gi|424665889|ref|ZP_18102925.1| ribonuclease HII [Bacteroides fragilis HMW 616]
gi|404574142|gb|EKA78893.1| ribonuclease HII [Bacteroides fragilis HMW 616]
Length = 201
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 89/196 (45%), Gaps = 45/196 (22%)
Query: 18 GIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGW 77
G DEAGRG + G + + P ++ L LN DSK L E++R L E ++ +++ W
Sbjct: 14 GCDEAGRGCLAGAVYAAAVILPKDFENEL--LN--DSKQLSEKQRYALREVIE-REAIAW 68
Query: 78 AVDIIDPRELSAKMLNKNKINLNEIS----HDSAIGLITRVLNIGILLTEVYLDTVGDAE 133
AV I+ P E+ +KIN+ S H + GL TR ++ I D
Sbjct: 69 AVGIVSPEEI-------DKINILNASFLAMHRAVDGLKTRPQHLLI-----------DGN 110
Query: 134 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG 193
+++ ++P I K D Y ++ ASI+AK RD + G +H+ F
Sbjct: 111 RFR-----KYPDIPHTTVVKGDGKYLSIAAASILAKTYRDDYMNG---------LHQEFP 156
Query: 194 SGYPGDHKHIIFGFPS 209
Y DH G+P+
Sbjct: 157 C-YGWDHNK---GYPT 168
>gi|315640709|ref|ZP_07895811.1| ribonuclease HII [Enterococcus italicus DSM 15952]
gi|315483464|gb|EFU73958.1| ribonuclease HII [Enterococcus italicus DSM 15952]
Length = 255
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 84/181 (46%), Gaps = 26/181 (14%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
+ GIDE GRGP+ GP+V + P + Q L DSK + E +RE LF+ + +
Sbjct: 73 AVAGIDEVGRGPLAGPVVAAAVILPPARQ----FLGLNDSKQVPEAQREALFQAIS-EQA 127
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
+ + II P+ + +++N+ E S + ++ + ++ + +D +
Sbjct: 128 IAIGIGIISPQCI-------DEVNIYEASK---LAMMEAIEHLSTPADYLLIDAM----- 172
Query: 135 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFGS 194
L P K + K D+ ++ ASI+AKVTRDR ++ + E + N G
Sbjct: 173 ---TLPINLPQEKLI---KGDARSNSIAAASIIAKVTRDRMMKQYAIEYPGYDFEHNAGY 226
Query: 195 G 195
G
Sbjct: 227 G 227
>gi|407793669|ref|ZP_11140701.1| ribonuclease HII [Idiomarina xiamenensis 10-D-4]
gi|407214368|gb|EKE84216.1| ribonuclease HII [Idiomarina xiamenensis 10-D-4]
Length = 187
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 69/166 (41%), Gaps = 29/166 (17%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I G DEAGRGP+ GP+V + DSK L E+KR L E +K N ++
Sbjct: 3 ICGTDEAGRGPIAGPVVAAAVI----LDPNKPIAGITDSKKLSEKKRASLSEAIKAN-AL 57
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
WA+ D E+ ++IN I S + + V + I +V +D
Sbjct: 58 AWAIAQCDADEI-------DRIN---ILQASMLAMQRAVAGLPIKPDKVLVD-------- 99
Query: 136 QAKLSQRFPSIKFVVSK--KADSLYPVVSGASIVAKVTRDRTLRGW 179
R P K D L + ASI+AKV RDR + W
Sbjct: 100 ----GNRAPDFGIAAQAIVKGDLLEDCIGAASILAKVERDRQMLAW 141
>gi|420256628|ref|ZP_14759464.1| ribonuclease HII [Burkholderia sp. BT03]
gi|398042853|gb|EJL35812.1| ribonuclease HII [Burkholderia sp. BT03]
Length = 243
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 83/183 (45%), Gaps = 30/183 (16%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I G+DEAGRGP+ GP+V + S + DSK L +KR+EL+E + + S+
Sbjct: 33 ICGVDEAGRGPLAGPVVAAAVIFDPSKPRIR---GLDDSKALTAKKRDELYEKI-IERSL 88
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
+ V SA + + +N I H + + + V + + T +D
Sbjct: 89 AYCV-------ASASVEEIDALN---ILHATMLAMKRAVEGLKVAPTLAKID-------- 130
Query: 136 QAKLSQRFP--SIKFVVSKKADSLYPVVSGASIVAKVTRDRTL--RGWIFEETAENMHRN 191
R P SI+ D+L P +S ASI+AKVTRDR L +F + H
Sbjct: 131 ----GNRCPPLSIRSEAIIGGDALVPCISAASILAKVTRDRMLLELHQMFPVYGFDAHAG 186
Query: 192 FGS 194
+G+
Sbjct: 187 YGT 189
>gi|323484795|ref|ZP_08090152.1| ribonuclease HII [Clostridium symbiosum WAL-14163]
gi|323401901|gb|EGA94242.1| ribonuclease HII [Clostridium symbiosum WAL-14163]
Length = 219
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 91/189 (48%), Gaps = 28/189 (14%)
Query: 9 KWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFED 68
K+ I GIDEAGRGP+ GP+V P + L DSK L E +REELF +
Sbjct: 25 KYEEYSVICGIDEAGRGPLAGPVVAAAAVLP----KDAVILWLNDSKKLSERRREELFLE 80
Query: 69 LKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRV-LNIGILLTEVYLD 127
++ +V + V I+ P + ++IN+ + ++++ ++++ I L + +
Sbjct: 81 IR-EKAVAYGVGIVSPAVI-------DEINILQATYEAMRQAVSQLPAEPDIFLNDAVM- 131
Query: 128 TVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW--IFEETA 185
G +K Q ++ K D+ ++ AS++AKVTRD + + ++ E
Sbjct: 132 IPGINDKKQVRII------------KGDAKSVSIAAASVLAKVTRDHMMEEYDKLYPEYG 179
Query: 186 ENMHRNFGS 194
H+ +G+
Sbjct: 180 FAKHKGYGT 188
>gi|313147897|ref|ZP_07810090.1| ribonuclease HII [Bacteroides fragilis 3_1_12]
gi|423281174|ref|ZP_17260085.1| ribonuclease HII [Bacteroides fragilis HMW 610]
gi|313136664|gb|EFR54024.1| ribonuclease HII [Bacteroides fragilis 3_1_12]
gi|404583338|gb|EKA88019.1| ribonuclease HII [Bacteroides fragilis HMW 610]
Length = 201
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 89/196 (45%), Gaps = 45/196 (22%)
Query: 18 GIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGW 77
G DEAGRG + G + + P ++ L LN DSK L E++R L E ++ +++ W
Sbjct: 14 GCDEAGRGCLAGAVYAAAVILPKDFENEL--LN--DSKQLSEKQRYALREVIE-REAIAW 68
Query: 78 AVDIIDPRELSAKMLNKNKINLNEIS----HDSAIGLITRVLNIGILLTEVYLDTVGDAE 133
AV I+ P E+ +KIN+ S H + GL TR ++ I D
Sbjct: 69 AVGIVSPEEI-------DKINILNASFLAMHRAVDGLKTRPQHLLI-----------DGN 110
Query: 134 KYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG 193
+++ ++P I K D Y ++ ASI+AK RD + G +H+ F
Sbjct: 111 RFR-----KYPDIPHTTVVKGDGKYLSIAAASILAKTYRDDYMNG---------LHQEFP 156
Query: 194 SGYPGDHKHIIFGFPS 209
Y DH G+P+
Sbjct: 157 C-YGWDHNK---GYPT 168
>gi|417273920|ref|ZP_12061265.1| ribonuclease HII [Escherichia coli 2.4168]
gi|386234102|gb|EII66082.1| ribonuclease HII [Escherichia coli 2.4168]
Length = 198
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 88/191 (46%), Gaps = 31/191 (16%)
Query: 10 WASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDL 69
+ + G+DE GRGP++G +V + + + + LN DSK L E++R L+E++
Sbjct: 6 YPHTQLVAGVDEVGRGPLVGAVVTAAVILDPA--RPIVGLN--DSKKLSEKRRLALYEEI 61
Query: 70 KVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTV 129
K ++ W++ +P E+ +++N I H + + + V + I V +D
Sbjct: 62 K-EKALSWSLGRAEPHEI-------DELN---ILHATMLAMQRAVAGLHIAPEYVLID-- 108
Query: 130 GDAEKYQAKLSQRFPSIKF--VVSKKADSLYPVVSGASIVAKVTRDRTLRGW--IFEETA 185
R P + + K DS P +S ASI+AKVTRD + +F +
Sbjct: 109 ----------GNRCPKLPMPAMAVVKGDSRVPEISAASILAKVTRDAEMAALDIVFPQYG 158
Query: 186 ENMHRNFGSGY 196
H+ + + +
Sbjct: 159 FAQHKGYPTAF 169
>gi|428771262|ref|YP_007163052.1| RNase HII [Cyanobacterium aponinum PCC 10605]
gi|428685541|gb|AFZ55008.1| RNase HII [Cyanobacterium aponinum PCC 10605]
Length = 210
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 95/215 (44%), Gaps = 27/215 (12%)
Query: 6 ALPKWASNPCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREEL 65
+L K S+ I+G+DE GRG + G +V + P L + DSK L KRE L
Sbjct: 16 SLLKSDSDSLIVGVDEVGRGCLFGGVVAAAVAMPLKKIHLLRDIGVNDSKKLTPRKRESL 75
Query: 66 FEDLKVNDSVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVY 125
+K +V I++ ++ +N I S + + +LN+ I Y
Sbjct: 76 INPIK---AVVDCYSIVEVDNITIDQIN--------IFQASLLAMTRAILNLSI---SPY 121
Query: 126 LDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETA 185
L V D + LS FP I + K D P+++ ASI+AKV RD + + T
Sbjct: 122 LCLV-DGKFTLPNLS--FPQISLI---KGDMRSPLIASASILAKVWRDEKMLEYDQRYTN 175
Query: 186 ENMHRNFGSGYPGDHKHI----IFGFPSLVRFSWG 216
++ N GY G KH+ ++G L R S+
Sbjct: 176 YDLKNN--KGY-GTKKHLDAIALYGLTPLHRKSFN 207
>gi|322831602|ref|YP_004211629.1| Ribonuclease H [Rahnella sp. Y9602]
gi|384256716|ref|YP_005400650.1| ribonuclease HII [Rahnella aquatilis HX2]
gi|321166803|gb|ADW72502.1| Ribonuclease H [Rahnella sp. Y9602]
gi|380752692|gb|AFE57083.1| ribonuclease HII [Rahnella aquatilis HX2]
Length = 198
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 75/164 (45%), Gaps = 29/164 (17%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
CI G+DE GRGP++G +V + ADSK L E++RE L+ ++K +
Sbjct: 12 CIAGVDEVGRGPLVGAVVTAAVI----LDPANPIAGLADSKKLSEKRREALYIEIK-EKA 66
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
+ W++ +P E+ +++N I H + + + V + I V +D
Sbjct: 67 LAWSLGRAEPHEI-------DELN---ILHATMLAMQRAVAGLCITPDMVLID------- 109
Query: 135 YQAKLSQRFPSIKFVVSK--KADSLYPVVSGASIVAKVTRDRTL 176
R P + K DS +S ASI+AKVTRDR +
Sbjct: 110 -----GNRCPKLPMASQAIVKGDSKVAEISAASILAKVTRDREM 148
>gi|451969090|ref|ZP_21922319.1| ribonuclease HII [Treponema denticola US-Trep]
gi|451702262|gb|EMD56691.1| ribonuclease HII [Treponema denticola US-Trep]
Length = 198
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 92/197 (46%), Gaps = 30/197 (15%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+ GIDEAGRGP+ GP+ G P ++ DSK L E+KREE+ + + + +V
Sbjct: 2 LCGIDEAGRGPLAGPVTAGARIRPSPTNFSI----LKDSKKLTEKKREEVRKTIYADPNV 57
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYL--DTVGDAE 133
W++ E+ + + E +++ GL ++ L + ++ D + D
Sbjct: 58 LWSIGWASNYEIDEINILQATFLAMERAYE---GLYLKLQEFCKLNNDKFIEPDIIVDG- 113
Query: 134 KYQAKLSQRFPSIKFVVSKKA-----DSLYPVVSGASIVAKVTRDRTL--RGWIFEETAE 186
P+IK S KA DS+Y V++ ASI+AK RD+ + W++ E
Sbjct: 114 -------NFIPNIKNCSSIKALVKADDSVYEVMA-ASILAKTARDKMMIRYSWLYPEYGY 165
Query: 187 NMHRNFGSGYPGDHKHI 203
H+ +G+ KHI
Sbjct: 166 EKHKGYGT-----KKHI 177
>gi|418465650|ref|ZP_13036584.1| ribonuclease HII [Aggregatibacter actinomycetemcomitans RhAA1]
gi|359755922|gb|EHK90084.1| ribonuclease HII [Aggregatibacter actinomycetemcomitans RhAA1]
Length = 199
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 76/165 (46%), Gaps = 30/165 (18%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
I G+DE GRGP++G +V + + ADSKTL E+KR L E++K +
Sbjct: 12 LIAGVDEVGRGPLVGAVVTAAVILDPQH----PVEGLADSKTLSEKKRLLLAEEIK-QKA 66
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
+ WA+ +P N+I+ I H S + + ++ I V +D
Sbjct: 67 LAWALGRAEP----------NEIDELNILHASMFAMERAIKHLKIQPHFVLVD------- 109
Query: 135 YQAKLSQRFPSIKFVVSK---KADSLYPVVSGASIVAKVTRDRTL 176
R P + ++ K D+L P +S ASI+AKV RD+ +
Sbjct: 110 -----GNRIPPNLMIPAQAVVKGDALVPEISAASILAKVARDQEM 149
>gi|163785164|ref|ZP_02179855.1| RNase HII [Hydrogenivirga sp. 128-5-R1-1]
gi|159879566|gb|EDP73379.1| RNase HII [Hydrogenivirga sp. 128-5-R1-1]
Length = 190
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 61/206 (29%), Positives = 93/206 (45%), Gaps = 39/206 (18%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I+GIDEAGRGP+ GP+V + P + + DSK L +KRE LFE++K ++
Sbjct: 16 IVGIDEAGRGPLAGPVVSAAVIFPSNIDIFITK----DSKKLSPKKREILFEEIK-KKAL 70
Query: 76 GWAVDIIDPREL-SAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
+ ++D E+ + N K+ + L T + ++T+ Y+
Sbjct: 71 AVGIGVVDSCEIDKVNIYNATKLAMKR-------ALFTLKSDFDYIITD-YV-------- 114
Query: 135 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNFG- 193
+F + KKAD V+ ASI+AKV RD+ I E +E +F
Sbjct: 115 -------KFDPYPHISVKKADEKSISVAAASIIAKVYRDK-----IMEYFSEIYPHSFDK 162
Query: 194 -SGYPGD-HKHII--FGFPSLVRFSW 215
GYP HK I FG + R S+
Sbjct: 163 HKGYPTKLHKEEIKKFGITPIHRKSF 188
>gi|110640402|ref|YP_668130.1| ribonuclease HII [Escherichia coli 536]
gi|170680885|ref|YP_001742311.1| ribonuclease HII [Escherichia coli SMS-3-5]
gi|191172810|ref|ZP_03034347.1| ribonuclease HII [Escherichia coli F11]
gi|215485344|ref|YP_002327775.1| ribonuclease HII [Escherichia coli O127:H6 str. E2348/69]
gi|218688058|ref|YP_002396270.1| ribonuclease HII [Escherichia coli ED1a]
gi|218703437|ref|YP_002410956.1| ribonuclease HII [Escherichia coli UMN026]
gi|222155008|ref|YP_002555147.1| ribonuclease HII [Escherichia coli LF82]
gi|293403252|ref|ZP_06647349.1| rnhB [Escherichia coli FVEC1412]
gi|298378788|ref|ZP_06988672.1| ribonuclease HII [Escherichia coli FVEC1302]
gi|300900779|ref|ZP_07118923.1| ribonuclease HII [Escherichia coli MS 198-1]
gi|300938590|ref|ZP_07153323.1| ribonuclease HII [Escherichia coli MS 21-1]
gi|300984943|ref|ZP_07177208.1| ribonuclease HII [Escherichia coli MS 200-1]
gi|306815218|ref|ZP_07449367.1| ribonuclease HII [Escherichia coli NC101]
gi|312966320|ref|ZP_07780546.1| ribonuclease HII family protein [Escherichia coli 2362-75]
gi|331645326|ref|ZP_08346437.1| ribonuclease HII [Escherichia coli M605]
gi|331661254|ref|ZP_08362186.1| ribonuclease HII [Escherichia coli TA206]
gi|331681568|ref|ZP_08382205.1| ribonuclease HII [Escherichia coli H299]
gi|386617689|ref|YP_006137269.1| Ribonuclease HII [Escherichia coli NA114]
gi|387605658|ref|YP_006094514.1| ribonuclease HII [Escherichia coli 042]
gi|387610655|ref|YP_006113771.1| ribonuclease HII [Escherichia coli ETEC H10407]
gi|387615530|ref|YP_006118552.1| ribonuclease HII [Escherichia coli O83:H1 str. NRG 857C]
gi|387828251|ref|YP_003348188.1| ribonuclease HII [Escherichia coli SE15]
gi|415837491|ref|ZP_11519565.1| ribonuclease HII family protein [Escherichia coli RN587/1]
gi|416334578|ref|ZP_11671411.1| Ribonuclease HII [Escherichia coli WV_060327]
gi|417151363|ref|ZP_11990890.1| ribonuclease HII [Escherichia coli 1.2264]
gi|417284216|ref|ZP_12071511.1| ribonuclease HII [Escherichia coli 3003]
gi|417287869|ref|ZP_12075155.1| ribonuclease HII [Escherichia coli TW07793]
gi|417585002|ref|ZP_12235785.1| ribonuclease HII family protein [Escherichia coli STEC_C165-02]
gi|417660815|ref|ZP_12310396.1| ribonuclease H2 [Escherichia coli AA86]
gi|417754009|ref|ZP_12402106.1| ribonuclease HII family protein [Escherichia coli DEC2B]
gi|418995114|ref|ZP_13542734.1| ribonuclease HII family protein [Escherichia coli DEC1A]
gi|419000352|ref|ZP_13547918.1| ribonuclease HII family protein [Escherichia coli DEC1B]
gi|419005908|ref|ZP_13553366.1| ribonuclease HII family protein [Escherichia coli DEC1C]
gi|419011742|ref|ZP_13559112.1| ribonuclease HII [Escherichia coli DEC1D]
gi|419016680|ref|ZP_13564008.1| ribonuclease HII family protein [Escherichia coli DEC1E]
gi|419022270|ref|ZP_13569519.1| ribonuclease HII [Escherichia coli DEC2A]
gi|419027163|ref|ZP_13574367.1| ribonuclease HII family protein [Escherichia coli DEC2C]
gi|419032756|ref|ZP_13579857.1| ribonuclease HII family protein [Escherichia coli DEC2D]
gi|419037946|ref|ZP_13585009.1| ribonuclease HII family protein [Escherichia coli DEC2E]
gi|419699112|ref|ZP_14226735.1| ribonuclease HII [Escherichia coli SCI-07]
gi|419912642|ref|ZP_14431090.1| ribonuclease HII [Escherichia coli KD1]
gi|419935213|ref|ZP_14452298.1| ribonuclease HII [Escherichia coli 576-1]
gi|422374561|ref|ZP_16454839.1| ribonuclease HII [Escherichia coli MS 60-1]
gi|422380538|ref|ZP_16460716.1| ribonuclease HII [Escherichia coli MS 57-2]
gi|425276057|ref|ZP_18667412.1| ribonuclease HII [Escherichia coli ARS4.2123]
gi|425286698|ref|ZP_18677652.1| ribonuclease HII [Escherichia coli 3006]
gi|425298357|ref|ZP_18688415.1| ribonuclease HII [Escherichia coli 07798]
gi|432351816|ref|ZP_19595129.1| ribonuclease HII [Escherichia coli KTE2]
gi|432384740|ref|ZP_19627653.1| ribonuclease HII [Escherichia coli KTE15]
gi|432385569|ref|ZP_19628471.1| ribonuclease HII [Escherichia coli KTE16]
gi|432396038|ref|ZP_19638831.1| ribonuclease HII [Escherichia coli KTE25]
gi|432400262|ref|ZP_19643023.1| ribonuclease HII [Escherichia coli KTE26]
gi|432405071|ref|ZP_19647795.1| ribonuclease HII [Escherichia coli KTE28]
gi|432420307|ref|ZP_19662866.1| ribonuclease HII [Escherichia coli KTE178]
gi|432429293|ref|ZP_19671759.1| ribonuclease HII [Escherichia coli KTE181]
gi|432430344|ref|ZP_19672794.1| ribonuclease HII [Escherichia coli KTE187]
gi|432439519|ref|ZP_19681884.1| ribonuclease HII [Escherichia coli KTE189]
gi|432444642|ref|ZP_19686953.1| ribonuclease HII [Escherichia coli KTE191]
gi|432452937|ref|ZP_19695184.1| ribonuclease HII [Escherichia coli KTE193]
gi|432464035|ref|ZP_19706155.1| ribonuclease HII [Escherichia coli KTE204]
gi|432469105|ref|ZP_19711168.1| ribonuclease HII [Escherichia coli KTE205]
gi|432469516|ref|ZP_19711572.1| ribonuclease HII [Escherichia coli KTE206]
gi|432474179|ref|ZP_19716196.1| ribonuclease HII [Escherichia coli KTE208]
gi|432492486|ref|ZP_19734331.1| ribonuclease HII [Escherichia coli KTE213]
gi|432498483|ref|ZP_19740264.1| ribonuclease HII [Escherichia coli KTE216]
gi|432512381|ref|ZP_19749628.1| ribonuclease HII [Escherichia coli KTE224]
gi|432520831|ref|ZP_19758002.1| ribonuclease HII [Escherichia coli KTE228]
gi|432529484|ref|ZP_19766542.1| ribonuclease HII [Escherichia coli KTE233]
gi|432541005|ref|ZP_19777885.1| ribonuclease HII [Escherichia coli KTE235]
gi|432552221|ref|ZP_19788955.1| ribonuclease HII [Escherichia coli KTE47]
gi|432557214|ref|ZP_19793908.1| ribonuclease HII [Escherichia coli KTE49]
gi|432581376|ref|ZP_19817794.1| ribonuclease HII [Escherichia coli KTE57]
gi|432609889|ref|ZP_19846065.1| ribonuclease HII [Escherichia coli KTE72]
gi|432634628|ref|ZP_19870535.1| ribonuclease HII [Escherichia coli KTE80]
gi|432644219|ref|ZP_19880033.1| ribonuclease HII [Escherichia coli KTE83]
gi|432644592|ref|ZP_19880399.1| ribonuclease HII [Escherichia coli KTE86]
gi|432654226|ref|ZP_19889948.1| ribonuclease HII [Escherichia coli KTE93]
gi|432664339|ref|ZP_19899941.1| ribonuclease HII [Escherichia coli KTE116]
gi|432678595|ref|ZP_19914000.1| ribonuclease HII [Escherichia coli KTE143]
gi|432692871|ref|ZP_19928091.1| ribonuclease HII [Escherichia coli KTE162]
gi|432697490|ref|ZP_19932666.1| ribonuclease HII [Escherichia coli KTE169]
gi|432709029|ref|ZP_19944098.1| ribonuclease HII [Escherichia coli KTE6]
gi|432711871|ref|ZP_19946925.1| ribonuclease HII [Escherichia coli KTE8]
gi|432717196|ref|ZP_19952200.1| ribonuclease HII [Escherichia coli KTE9]
gi|432721784|ref|ZP_19956713.1| ribonuclease HII [Escherichia coli KTE17]
gi|432726194|ref|ZP_19961083.1| ribonuclease HII [Escherichia coli KTE18]
gi|432730905|ref|ZP_19965766.1| ribonuclease HII [Escherichia coli KTE45]
gi|432739962|ref|ZP_19974685.1| ribonuclease HII [Escherichia coli KTE23]
gi|432744109|ref|ZP_19978818.1| ribonuclease HII [Escherichia coli KTE43]
gi|432762456|ref|ZP_19996920.1| ribonuclease HII [Escherichia coli KTE46]
gi|432768991|ref|ZP_20003370.1| ribonuclease HII [Escherichia coli KTE50]
gi|432773334|ref|ZP_20007636.1| ribonuclease HII [Escherichia coli KTE54]
gi|432791409|ref|ZP_20025506.1| ribonuclease HII [Escherichia coli KTE78]
gi|432797379|ref|ZP_20031408.1| ribonuclease HII [Escherichia coli KTE79]
gi|432837742|ref|ZP_20071238.1| ribonuclease HII [Escherichia coli KTE140]
gi|432842445|ref|ZP_20075873.1| ribonuclease HII [Escherichia coli KTE141]
gi|432883873|ref|ZP_20099076.1| ribonuclease HII [Escherichia coli KTE158]
gi|432892759|ref|ZP_20104926.1| ribonuclease HII [Escherichia coli KTE165]
gi|432896855|ref|ZP_20107949.1| ribonuclease HII [Escherichia coli KTE192]
gi|432902484|ref|ZP_20112232.1| ribonuclease HII [Escherichia coli KTE194]
gi|432909740|ref|ZP_20117013.1| ribonuclease HII [Escherichia coli KTE190]
gi|432917171|ref|ZP_20121842.1| ribonuclease HII [Escherichia coli KTE173]
gi|432924466|ref|ZP_20126753.1| ribonuclease HII [Escherichia coli KTE175]
gi|432941878|ref|ZP_20139376.1| ribonuclease HII [Escherichia coli KTE183]
gi|432958911|ref|ZP_20149769.1| ribonuclease HII [Escherichia coli KTE202]
gi|432970320|ref|ZP_20159202.1| ribonuclease HII [Escherichia coli KTE207]
gi|432979571|ref|ZP_20168359.1| ribonuclease HII [Escherichia coli KTE211]
gi|432983906|ref|ZP_20172648.1| ribonuclease HII [Escherichia coli KTE215]
gi|432989128|ref|ZP_20177801.1| ribonuclease HII [Escherichia coli KTE217]
gi|433012357|ref|ZP_20200746.1| ribonuclease HII [Escherichia coli KTE104]
gi|433017156|ref|ZP_20205432.1| ribonuclease HII [Escherichia coli KTE105]
gi|433026552|ref|ZP_20214506.1| ribonuclease HII [Escherichia coli KTE106]
gi|433027202|ref|ZP_20215082.1| ribonuclease HII [Escherichia coli KTE109]
gi|433031589|ref|ZP_20219414.1| ribonuclease HII [Escherichia coli KTE112]
gi|433037109|ref|ZP_20224737.1| ribonuclease HII [Escherichia coli KTE113]
gi|433051397|ref|ZP_20238646.1| ribonuclease HII [Escherichia coli KTE122]
gi|433061390|ref|ZP_20248364.1| ribonuclease HII [Escherichia coli KTE125]
gi|433066303|ref|ZP_20253158.1| ribonuclease HII [Escherichia coli KTE128]
gi|433071095|ref|ZP_20257812.1| ribonuclease HII [Escherichia coli KTE129]
gi|433076342|ref|ZP_20262922.1| ribonuclease HII [Escherichia coli KTE131]
gi|433081088|ref|ZP_20267568.1| ribonuclease HII [Escherichia coli KTE133]
gi|433095064|ref|ZP_20281290.1| ribonuclease HII [Escherichia coli KTE139]
gi|433099722|ref|ZP_20285843.1| ribonuclease HII [Escherichia coli KTE145]
gi|433104367|ref|ZP_20290392.1| ribonuclease HII [Escherichia coli KTE148]
gi|433109363|ref|ZP_20295247.1| ribonuclease HII [Escherichia coli KTE150]
gi|433118661|ref|ZP_20304384.1| ribonuclease HII [Escherichia coli KTE157]
gi|433142682|ref|ZP_20327868.1| ribonuclease HII [Escherichia coli KTE168]
gi|433157120|ref|ZP_20342003.1| ribonuclease HII [Escherichia coli KTE177]
gi|433176543|ref|ZP_20361023.1| ribonuclease HII [Escherichia coli KTE82]
gi|433181625|ref|ZP_20365937.1| ribonuclease HII [Escherichia coli KTE85]
gi|433191505|ref|ZP_20375572.1| ribonuclease HII [Escherichia coli KTE88]
gi|433196753|ref|ZP_20380691.1| ribonuclease HII [Escherichia coli KTE94]
gi|433201623|ref|ZP_20385440.1| ribonuclease HII [Escherichia coli KTE95]
gi|433206354|ref|ZP_20390063.1| ribonuclease HII [Escherichia coli KTE97]
gi|433325068|ref|ZP_20402285.1| ribonuclease HII [Escherichia coli J96]
gi|123049490|sp|Q0TLF0.1|RNH2_ECOL5 RecName: Full=Ribonuclease HII; Short=RNase HII
gi|226736820|sp|B7N850.1|RNH2_ECOLU RecName: Full=Ribonuclease HII; Short=RNase HII
gi|226736821|sp|B1LGY5.1|RNH2_ECOSM RecName: Full=Ribonuclease HII; Short=RNase HII
gi|254807974|sp|B7UJ84.1|RNH2_ECO27 RecName: Full=Ribonuclease HII; Short=RNase HII
gi|254807976|sp|B7MP43.1|RNH2_ECO81 RecName: Full=Ribonuclease HII; Short=RNase HII
gi|110341994|gb|ABG68231.1| ribonuclease HII [Escherichia coli 536]
gi|170518603|gb|ACB16781.1| ribonuclease HII [Escherichia coli SMS-3-5]
gi|190906960|gb|EDV66562.1| ribonuclease HII [Escherichia coli F11]
gi|215263416|emb|CAS07736.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Escherichia coli
O127:H6 str. E2348/69]
gi|218425622|emb|CAR06408.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Escherichia coli
ED1a]
gi|218430534|emb|CAR11400.1| ribonuclease HII, degrades RNA of DNA-RNA hybrids [Escherichia coli
UMN026]
gi|222032013|emb|CAP74752.1| ribonuclease HII [Escherichia coli LF82]
gi|281177408|dbj|BAI53738.1| ribonuclease HII [Escherichia coli SE15]
gi|284919958|emb|CBG33013.1| ribonuclease HII [Escherichia coli 042]
gi|291430167|gb|EFF03181.1| rnhB [Escherichia coli FVEC1412]
gi|298281122|gb|EFI22623.1| ribonuclease HII [Escherichia coli FVEC1302]
gi|300306593|gb|EFJ61113.1| ribonuclease HII [Escherichia coli MS 200-1]
gi|300355728|gb|EFJ71598.1| ribonuclease HII [Escherichia coli MS 198-1]
gi|300456472|gb|EFK19965.1| ribonuclease HII [Escherichia coli MS 21-1]
gi|305850880|gb|EFM51335.1| ribonuclease HII [Escherichia coli NC101]
gi|309700391|emb|CBI99679.1| ribonuclease HII [Escherichia coli ETEC H10407]
gi|312289563|gb|EFR17457.1| ribonuclease HII family protein [Escherichia coli 2362-75]
gi|312944791|gb|ADR25618.1| ribonuclease HII [Escherichia coli O83:H1 str. NRG 857C]
gi|320196940|gb|EFW71561.1| Ribonuclease HII [Escherichia coli WV_060327]
gi|323190417|gb|EFZ75692.1| ribonuclease HII family protein [Escherichia coli RN587/1]
gi|324008245|gb|EGB77464.1| ribonuclease HII [Escherichia coli MS 57-2]
gi|324014099|gb|EGB83318.1| ribonuclease HII [Escherichia coli MS 60-1]
gi|330910033|gb|EGH38543.1| ribonuclease H2 [Escherichia coli AA86]
gi|331046083|gb|EGI18202.1| ribonuclease HII [Escherichia coli M605]
gi|331052296|gb|EGI24335.1| ribonuclease HII [Escherichia coli TA206]
gi|331081789|gb|EGI52950.1| ribonuclease HII [Escherichia coli H299]
gi|333968190|gb|AEG34995.1| Ribonuclease HII [Escherichia coli NA114]
gi|345342365|gb|EGW74761.1| ribonuclease HII family protein [Escherichia coli STEC_C165-02]
gi|377850481|gb|EHU15443.1| ribonuclease HII family protein [Escherichia coli DEC1A]
gi|377851649|gb|EHU16594.1| ribonuclease HII family protein [Escherichia coli DEC1C]
gi|377854413|gb|EHU19291.1| ribonuclease HII family protein [Escherichia coli DEC1B]
gi|377865276|gb|EHU30068.1| ribonuclease HII [Escherichia coli DEC1D]
gi|377867887|gb|EHU32641.1| ribonuclease HII family protein [Escherichia coli DEC1E]
gi|377869353|gb|EHU34070.1| ribonuclease HII [Escherichia coli DEC2A]
gi|377880939|gb|EHU45505.1| ribonuclease HII family protein [Escherichia coli DEC2B]
gi|377884687|gb|EHU49195.1| ribonuclease HII family protein [Escherichia coli DEC2D]
gi|377886399|gb|EHU50881.1| ribonuclease HII family protein [Escherichia coli DEC2C]
gi|377899454|gb|EHU63802.1| ribonuclease HII family protein [Escherichia coli DEC2E]
gi|380349754|gb|EIA38019.1| ribonuclease HII [Escherichia coli SCI-07]
gi|386159554|gb|EIH21368.1| ribonuclease HII [Escherichia coli 1.2264]
gi|386242425|gb|EII84160.1| ribonuclease HII [Escherichia coli 3003]
gi|386248654|gb|EII94826.1| ribonuclease HII [Escherichia coli TW07793]
gi|388391176|gb|EIL52649.1| ribonuclease HII [Escherichia coli KD1]
gi|388404951|gb|EIL65390.1| ribonuclease HII [Escherichia coli 576-1]
gi|408207609|gb|EKI32330.1| ribonuclease HII [Escherichia coli ARS4.2123]
gi|408219809|gb|EKI43927.1| ribonuclease HII [Escherichia coli 3006]
gi|408222104|gb|EKI46011.1| ribonuclease HII [Escherichia coli 07798]
gi|430881395|gb|ELC04649.1| ribonuclease HII [Escherichia coli KTE2]
gi|430901963|gb|ELC23859.1| ribonuclease HII [Escherichia coli KTE15]
gi|430911097|gb|ELC32395.1| ribonuclease HII [Escherichia coli KTE16]
gi|430919060|gb|ELC40011.1| ribonuclease HII [Escherichia coli KTE25]
gi|430930377|gb|ELC50878.1| ribonuclease HII [Escherichia coli KTE26]
gi|430933296|gb|ELC53707.1| ribonuclease HII [Escherichia coli KTE28]
gi|430947895|gb|ELC67583.1| ribonuclease HII [Escherichia coli KTE178]
gi|430948475|gb|ELC68063.1| ribonuclease HII [Escherichia coli KTE181]
gi|430957650|gb|ELC76302.1| ribonuclease HII [Escherichia coli KTE187]
gi|430969927|gb|ELC87020.1| ribonuclease HII [Escherichia coli KTE189]
gi|430975531|gb|ELC92426.1| ribonuclease HII [Escherichia coli KTE193]
gi|430976754|gb|ELC93612.1| ribonuclease HII [Escherichia coli KTE191]
gi|430983338|gb|ELD00002.1| ribonuclease HII [Escherichia coli KTE204]
gi|430988239|gb|ELD04739.1| ribonuclease HII [Escherichia coli KTE205]
gi|431001494|gb|ELD17077.1| ribonuclease HII [Escherichia coli KTE206]
gi|431011870|gb|ELD25944.1| ribonuclease HII [Escherichia coli KTE208]
gi|431014238|gb|ELD27947.1| ribonuclease HII [Escherichia coli KTE213]
gi|431032928|gb|ELD45634.1| ribonuclease HII [Escherichia coli KTE216]
gi|431045511|gb|ELD55744.1| ribonuclease HII [Escherichia coli KTE224]
gi|431046214|gb|ELD56333.1| ribonuclease HII [Escherichia coli KTE228]
gi|431057822|gb|ELD67240.1| ribonuclease HII [Escherichia coli KTE233]
gi|431065160|gb|ELD73937.1| ribonuclease HII [Escherichia coli KTE235]
gi|431087920|gb|ELD93841.1| ribonuclease HII [Escherichia coli KTE47]
gi|431094832|gb|ELE00461.1| ribonuclease HII [Escherichia coli KTE49]
gi|431123136|gb|ELE25879.1| ribonuclease HII [Escherichia coli KTE57]
gi|431152520|gb|ELE53471.1| ribonuclease HII [Escherichia coli KTE72]
gi|431165480|gb|ELE65833.1| ribonuclease HII [Escherichia coli KTE80]
gi|431176100|gb|ELE76086.1| ribonuclease HII [Escherichia coli KTE83]
gi|431185596|gb|ELE85325.1| ribonuclease HII [Escherichia coli KTE86]
gi|431196274|gb|ELE95219.1| ribonuclease HII [Escherichia coli KTE93]
gi|431205378|gb|ELF03871.1| ribonuclease HII [Escherichia coli KTE116]
gi|431225551|gb|ELF22751.1| ribonuclease HII [Escherichia coli KTE143]
gi|431237891|gb|ELF32873.1| ribonuclease HII [Escherichia coli KTE162]
gi|431247679|gb|ELF41900.1| ribonuclease HII [Escherichia coli KTE169]
gi|431252750|gb|ELF46264.1| ribonuclease HII [Escherichia coli KTE6]
gi|431260415|gb|ELF52513.1| ribonuclease HII [Escherichia coli KTE8]
gi|431267317|gb|ELF58835.1| ribonuclease HII [Escherichia coli KTE9]
gi|431268997|gb|ELF60358.1| ribonuclease HII [Escherichia coli KTE17]
gi|431277442|gb|ELF68456.1| ribonuclease HII [Escherichia coli KTE18]
gi|431278919|gb|ELF69892.1| ribonuclease HII [Escherichia coli KTE45]
gi|431287334|gb|ELF78152.1| ribonuclease HII [Escherichia coli KTE23]
gi|431296482|gb|ELF86194.1| ribonuclease HII [Escherichia coli KTE43]
gi|431302408|gb|ELF91594.1| ribonuclease HII [Escherichia coli KTE46]
gi|431320149|gb|ELG07797.1| ribonuclease HII [Escherichia coli KTE50]
gi|431321844|gb|ELG09444.1| ribonuclease HII [Escherichia coli KTE54]
gi|431343077|gb|ELG30047.1| ribonuclease HII [Escherichia coli KTE78]
gi|431346593|gb|ELG33498.1| ribonuclease HII [Escherichia coli KTE79]
gi|431392573|gb|ELG76146.1| ribonuclease HII [Escherichia coli KTE140]
gi|431398213|gb|ELG81636.1| ribonuclease HII [Escherichia coli KTE141]
gi|431420799|gb|ELH03075.1| ribonuclease HII [Escherichia coli KTE158]
gi|431426180|gb|ELH08225.1| ribonuclease HII [Escherichia coli KTE165]
gi|431430999|gb|ELH12778.1| ribonuclease HII [Escherichia coli KTE192]
gi|431438613|gb|ELH19987.1| ribonuclease HII [Escherichia coli KTE194]
gi|431448456|gb|ELH29173.1| ribonuclease HII [Escherichia coli KTE173]
gi|431448790|gb|ELH29503.1| ribonuclease HII [Escherichia coli KTE190]
gi|431450107|gb|ELH30599.1| ribonuclease HII [Escherichia coli KTE175]
gi|431456479|gb|ELH36823.1| ribonuclease HII [Escherichia coli KTE183]
gi|431483406|gb|ELH63098.1| ribonuclease HII [Escherichia coli KTE202]
gi|431487762|gb|ELH67406.1| ribonuclease HII [Escherichia coli KTE207]
gi|431498521|gb|ELH77707.1| ribonuclease HII [Escherichia coli KTE211]
gi|431500028|gb|ELH79045.1| ribonuclease HII [Escherichia coli KTE217]
gi|431507972|gb|ELH86254.1| ribonuclease HII [Escherichia coli KTE215]
gi|431527979|gb|ELI04693.1| ribonuclease HII [Escherichia coli KTE106]
gi|431536926|gb|ELI13082.1| ribonuclease HII [Escherichia coli KTE104]
gi|431538088|gb|ELI14193.1| ribonuclease HII [Escherichia coli KTE105]
gi|431546919|gb|ELI21306.1| ribonuclease HII [Escherichia coli KTE109]
gi|431557217|gb|ELI30991.1| ribonuclease HII [Escherichia coli KTE113]
gi|431561524|gb|ELI34893.1| ribonuclease HII [Escherichia coli KTE112]
gi|431576490|gb|ELI49177.1| ribonuclease HII [Escherichia coli KTE122]
gi|431589669|gb|ELI60883.1| ribonuclease HII [Escherichia coli KTE125]
gi|431593165|gb|ELI63729.1| ribonuclease HII [Escherichia coli KTE128]
gi|431595644|gb|ELI65637.1| ribonuclease HII [Escherichia coli KTE129]
gi|431603336|gb|ELI72762.1| ribonuclease HII [Escherichia coli KTE131]
gi|431607340|gb|ELI76710.1| ribonuclease HII [Escherichia coli KTE133]
gi|431620802|gb|ELI89629.1| ribonuclease HII [Escherichia coli KTE139]
gi|431624045|gb|ELI92669.1| ribonuclease HII [Escherichia coli KTE145]
gi|431633525|gb|ELJ01805.1| ribonuclease HII [Escherichia coli KTE150]
gi|431634811|gb|ELJ03032.1| ribonuclease HII [Escherichia coli KTE148]
gi|431650484|gb|ELJ17805.1| ribonuclease HII [Escherichia coli KTE157]
gi|431668062|gb|ELJ34638.1| ribonuclease HII [Escherichia coli KTE168]
gi|431683289|gb|ELJ48927.1| ribonuclease HII [Escherichia coli KTE177]
gi|431699574|gb|ELJ64579.1| ribonuclease HII [Escherichia coli KTE88]
gi|431711720|gb|ELJ76033.1| ribonuclease HII [Escherichia coli KTE82]
gi|431712772|gb|ELJ77050.1| ribonuclease HII [Escherichia coli KTE85]
gi|431726651|gb|ELJ90459.1| ribonuclease HII [Escherichia coli KTE94]
gi|431727349|gb|ELJ91109.1| ribonuclease HII [Escherichia coli KTE95]
gi|431733953|gb|ELJ97356.1| ribonuclease HII [Escherichia coli KTE97]
gi|432346617|gb|ELL41098.1| ribonuclease HII [Escherichia coli J96]
Length = 198
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 88/183 (48%), Gaps = 27/183 (14%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
+ G+DE GRGP++G +V + + +A LN DSK L E++R L E++K ++
Sbjct: 12 VAGVDEVGRGPLVGAVVTAAVIL--DPARPIAGLN--DSKKLSEKRRLALCEEIK-EKAL 66
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
W++ +P E+ +++N I H + + + V + I V +D
Sbjct: 67 SWSLGRAEPHEI-------DELN---ILHATMLAMQRAVAGLHIAPEYVLIDG-----NR 111
Query: 136 QAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW--IFEETAENMHRNFG 193
KL PS+ V K DS P +S ASI+AKVTRD + +F + H+ +
Sbjct: 112 CPKLP--MPSMAVV---KGDSRVPEISAASILAKVTRDAEMAALDIVFPQYGFAQHKGYP 166
Query: 194 SGY 196
+ +
Sbjct: 167 TAF 169
>gi|154497939|ref|ZP_02036317.1| hypothetical protein BACCAP_01919 [Bacteroides capillosus ATCC
29799]
gi|150272929|gb|EDN00086.1| ribonuclease HII [Pseudoflavonifractor capillosus ATCC 29799]
Length = 210
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/225 (24%), Positives = 94/225 (41%), Gaps = 42/225 (18%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I G DEAG GP+ GP+ G + P + L DSK + ++R+ LFE+++ ++
Sbjct: 24 ICGADEAGAGPLAGPVYAGAVILP----EGLILEGLNDSKKVTPKRRDRLFEEIQ-EKAI 78
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
WAV +D +E+ A IN +LN + E+ + + A Y
Sbjct: 79 AWAVASVDEKEIDA-------IN---------------ILNARMKAMEMAIQALKPAPDY 116
Query: 136 QAKLSQRFPSIKFV--VSKKADSLYPVVSGASIVAKVTRDRTLR--GWIFEETAENMHRN 191
R I K D ++ ASI+AKV+RDR + ++ E H+
Sbjct: 117 ALIDGNRDKGITIAHETVVKGDGRSANIAAASILAKVSRDRYMEEMAKLYPEYEFERHKG 176
Query: 192 FGSGYPGDHKHIIFGFPSLVRFSWGTCTSHFKDIVEVLWESDEMD 236
+G+ F L+++ G C H + ++ L + D
Sbjct: 177 YGTK---------LHFELLMKY--GPCPIHRRSFLKKLEAAQSED 210
>gi|448308426|ref|ZP_21498303.1| ribonuclease HII [Natronorubrum bangense JCM 10635]
gi|445593714|gb|ELY47883.1| ribonuclease HII [Natronorubrum bangense JCM 10635]
Length = 227
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/225 (24%), Positives = 93/225 (41%), Gaps = 38/225 (16%)
Query: 17 MGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVG 76
G+DEAG+GP LG M ++ +T ADSK L +REEL ++ +D +
Sbjct: 3 FGVDEAGKGPALGSMFAAAVFL---EDRTALPDGIADSKRLTPARREELATLIREDDEIA 59
Query: 77 WAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGIL---LTEVYLDTVG--- 130
V E++ ++ + ++N ++ + I L+ G+ ++ + D+V
Sbjct: 60 VGV-----AEITTTRIDDPETDMNALAVTAHAEAIDEALS-GLCDDSVSGLCDDSVSGLC 113
Query: 131 -----DAEKYQAKLSQRF---PSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFE 182
DA+++ +++ + AD +V ASI+AKV RD + E
Sbjct: 114 DACDTDADRFARRVADACSISSGLDIDARHGADDDSTLVGAASIIAKVERDAHVAALADE 173
Query: 183 ETAENMHRNFGSGYPGDHKHIIF---------GFPSLVRFSWGTC 218
+ GSGYP D F P R SW TC
Sbjct: 174 ------YGPVGSGYPSDPTTQTFLESYVDEHGDLPPCARASWSTC 212
>gi|422020046|ref|ZP_16366588.1| ribonuclease HII [Providencia alcalifaciens Dmel2]
gi|414102670|gb|EKT64262.1| ribonuclease HII [Providencia alcalifaciens Dmel2]
Length = 196
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 89/184 (48%), Gaps = 29/184 (15%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYC-PCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS 74
I G+DE GRGP++G +V + P + + LA DSK L E+KRE+LF+++K +
Sbjct: 11 IAGVDEVGRGPLVGAVVTAAVILDPNNPIEGLA-----DSKKLSEKKREKLFDEIK-EKA 64
Query: 75 VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEK 134
+ W + +P E+ LN I H + + + V G+L+ ++ G+
Sbjct: 65 LCWCIGRAEPEEID---------QLN-ILHATMLAMQRAVE--GLLIKPEFVLVDGN--- 109
Query: 135 YQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGW--IFEETAENMHRNF 192
KL PS V K DSL +S ASI+AKV RDR + F E H+ +
Sbjct: 110 RCPKLD--MPSQAVV---KGDSLVQEISAASILAKVVRDREMVELDKAFPEYGFAKHKGY 164
Query: 193 GSGY 196
+ Y
Sbjct: 165 PTAY 168
>gi|390571398|ref|ZP_10251641.1| ribonuclease HII [Burkholderia terrae BS001]
gi|389936635|gb|EIM98520.1| ribonuclease HII [Burkholderia terrae BS001]
Length = 249
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 82/183 (44%), Gaps = 30/183 (16%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSV 75
I G+DEAGRGP+ GP+V + S + DSK L +KR+EL+E + + S+
Sbjct: 33 ICGVDEAGRGPLAGPVVAAAVIFDPSKPRIR---GLDDSKALTAKKRDELYEKI-IERSL 88
Query: 76 GWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKY 135
+ V E+ A LN I H + + + V + + T +D
Sbjct: 89 AYCVASASVEEIDA---------LN-ILHATMLAMKRAVEGLKVAPTLAKID-------- 130
Query: 136 QAKLSQRFP--SIKFVVSKKADSLYPVVSGASIVAKVTRDRTL--RGWIFEETAENMHRN 191
R P SI+ D+L P +S ASI+AKVTRDR L +F + H
Sbjct: 131 ----GNRCPTLSIRSEAIIGGDALVPCISAASILAKVTRDRMLLELHQMFPVYGFDAHAG 186
Query: 192 FGS 194
+G+
Sbjct: 187 YGT 189
>gi|387769245|ref|ZP_10125511.1| ribonuclease HII [Pasteurella bettyae CCUG 2042]
gi|386907201|gb|EIJ71916.1| ribonuclease HII [Pasteurella bettyae CCUG 2042]
Length = 199
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 89/214 (41%), Gaps = 48/214 (22%)
Query: 15 CIMGIDEAGRGPVLGPMVYGCLYC-PCSYQQTLATLNFADSKTLKEEKREELFEDLKVND 73
+ G+DE GRGP++G +V + P + + LA DSK L E+KRE+L E++K
Sbjct: 12 LVAGVDEVGRGPLVGAVVTAAVILDPNNPIEGLA-----DSKKLSEKKREQLAEEIK-QK 65
Query: 74 SVGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAE 133
++ WA+ +P E+ LN I H + + + V N+ I V +D
Sbjct: 66 ALAWALGRAEPEEID---------QLN-ILHATMLAMQRAVKNLKIQPHFVLVD------ 109
Query: 134 KYQAKLSQRFPSIKFVVSK--KADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRN 191
R P K DS +S ASI+AKV RD + E + +
Sbjct: 110 ------GNRVPEFAMPAQAVVKGDSKVQEISAASIIAKVARDHEM---------EELDKQ 154
Query: 192 FGSGYPGDHKHIIFGFPSLVRF----SWGTCTSH 221
+ HK G+P+ V +G H
Sbjct: 155 YPQYEFAKHK----GYPTKVHLEKLVEFGALPQH 184
>gi|419567622|ref|ZP_14104777.1| ribonuclease HII [Campylobacter coli 1417]
gi|419571443|ref|ZP_14108396.1| ribonuclease HII [Campylobacter coli 132-6]
gi|419591479|ref|ZP_14126827.1| ribonuclease HII [Campylobacter coli 37/05]
gi|419604287|ref|ZP_14138757.1| ribonuclease HII [Campylobacter coli LMG 9853]
gi|419614914|ref|ZP_14148681.1| ribonuclease HII [Campylobacter coli H56]
gi|380547766|gb|EIA71682.1| ribonuclease HII [Campylobacter coli 1417]
gi|380553592|gb|EIA77100.1| ribonuclease HII [Campylobacter coli 132-6]
gi|380568070|gb|EIA90553.1| ribonuclease HII [Campylobacter coli 37/05]
gi|380580364|gb|EIB02118.1| ribonuclease HII [Campylobacter coli LMG 9853]
gi|380592084|gb|EIB13006.1| ribonuclease HII [Campylobacter coli H56]
Length = 191
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 90/205 (43%), Gaps = 39/205 (19%)
Query: 16 IMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDS- 74
++GIDEAGRG + GPM+ C + L L DSK L E++REEL+E + N +
Sbjct: 18 LIGIDEAGRGALAGPMMMA----ACKLHKDLEGL--CDSKKLSEKRREELYEIIIKNSNY 71
Query: 75 --VGWAVDIIDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDA 132
+ ++ + ID LSA L +G+ L + + T +
Sbjct: 72 LILAFSSEKIDEIGLSA------------------------CLKMGLTLIKKHFKTENNF 107
Query: 133 EKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLRGWIFEETAENMHRNF 192
Y + IK + KAD+ VS ASI+AKV++DR + + +N
Sbjct: 108 -LYDGNTNLGISGIKTQI--KADANIKQVSAASILAKVSKDRVMNFLAKDFPCYEFEKNK 164
Query: 193 GSGYPGDHKHII--FGFPSLVRFSW 215
G HK +I FG L R S+
Sbjct: 165 AYGTKA-HKELIAKFGICKLHRKSF 188
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.318 0.135 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,414,245,325
Number of Sequences: 23463169
Number of extensions: 177084733
Number of successful extensions: 447065
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 818
Number of HSP's successfully gapped in prelim test: 3564
Number of HSP's that attempted gapping in prelim test: 439495
Number of HSP's gapped (non-prelim): 5538
length of query: 288
length of database: 8,064,228,071
effective HSP length: 141
effective length of query: 147
effective length of database: 9,050,888,538
effective search space: 1330480615086
effective search space used: 1330480615086
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 76 (33.9 bits)