Query 023038
Match_columns 288
No_of_seqs 256 out of 1499
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 15:18:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023038.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023038hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kio_A Ribonuclease H2 subunit 100.0 2.2E-78 7.6E-83 564.9 21.0 273 4-288 17-301 (301)
2 1eke_A Ribonuclease HII; endon 100.0 1.1E-59 3.7E-64 425.5 16.9 198 15-223 2-220 (230)
3 1i39_A Ribonuclease HII, RNAse 100.0 9.8E-59 3.3E-63 417.8 17.3 195 10-223 15-219 (225)
4 1io2_A Ribonuclease HII; endon 100.0 1.7E-58 5.8E-63 413.4 16.8 194 15-223 2-206 (213)
5 1uax_A Ribonuclease HII, ribon 100.0 1.1E-57 3.8E-62 409.9 15.6 195 15-224 2-207 (220)
6 2etj_A Ribonuclease HII, RNAse 100.0 2.3E-57 7.8E-62 412.7 8.7 196 10-236 19-218 (250)
7 2d0b_A RNAse HIII, ribonucleas 100.0 1.1E-51 3.7E-56 387.7 16.4 202 14-223 91-304 (310)
8 3vn5_A RNAse HIII, ribonucleas 100.0 1.8E-48 6.3E-53 356.9 14.0 179 18-216 75-256 (257)
9 2f8e_A VPG protein; RNA-depend 52.8 3.6 0.00012 24.0 0.4 7 25-31 1-7 (26)
10 1jr5_A 10 kDa anti-sigma facto 30.3 12 0.0004 28.5 0.2 20 159-178 10-29 (90)
11 2kih_A Matrix protein 2; S31N, 24.7 23 0.00077 23.0 0.8 16 154-169 3-18 (43)
12 2zzd_C Thiocyanate hydrolase s 23.3 78 0.0027 28.1 4.2 39 161-199 62-109 (243)
13 2ljb_A M2 protein, BM2 protein 20.3 35 0.0012 21.3 0.9 15 154-168 3-17 (35)
No 1
>3kio_A Ribonuclease H2 subunit A; aicardi-goutieres syndrome, RNAse H2, protein complex, autoimmune disease, endonuclease, hydrolase, metal-binding; 2.90A {Mus musculus} PDB: 3p5j_A 3puf_A 3p56_A
Probab=100.00 E-value=2.2e-78 Score=564.86 Aligned_cols=273 Identities=45% Similarity=0.835 Sum_probs=212.0
Q ss_pred CCCcCCcCCC-CceecccccCcCCcccceeeEEEEecccccccccccCcCCCCCCCHHHHHHHHHHhhhc-CcccEEEEE
Q 023038 4 EAALPKWASN-PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVN-DSVGWAVDI 81 (288)
Q Consensus 4 ~~~~p~~~~~-~~viGiDEAGRGpv~GPmVvaav~~~~~~~~~L~~~gv~DSK~Ls~~kRe~L~~~I~~~-~~~~~~v~~ 81 (288)
.|++|++|.+ ++++|||||||||++||||+|||++|.+....|..+||+|||+||+++|++||++|++. .+++|+|.+
T Consensus 17 ~s~~p~~~~~~~~v~GvDEaGRGplaGPvV~aavil~~~~~~~l~~~gl~DSKkLs~~kRe~L~~~I~~~~~a~~~~v~~ 96 (301)
T 3kio_A 17 SSPVPAVCLKEPCVLGVDEAGRGPVLGPMVYAICYCPLSRLADLEALKVADSKTLTENERERLFAKMEEDGDFVGWALDV 96 (301)
T ss_dssp ECCCCTHHHHSCEEEEEEEECSSCSBSCEEEEEEEEEGGGGGGCCCCCSCC--CCCHHHHHHHHHHHHHTTTTCEEEEEE
T ss_pred eCCCchhhcCCceEEeeeCCCCCCccccceEEEEEEchhhhhhHhhcCCCccccCCHHHHHHHHHHHHhhcccceEEEEe
Confidence 4799999987 99999999999999999999999999987777888999999999999999999999873 368999999
Q ss_pred ECHhhHhHHhhccccchHHHHHHHHHHHHHHHHHccCCCcceEEECCCCChHHHHHHhhccCCCcceEEeecCCccCcch
Q 023038 82 IDPRELSAKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVV 161 (288)
Q Consensus 82 isp~eId~~~~~~~~~NlN~l~~~~~~~li~~~l~~~~~~~~v~VD~~g~~~~y~~~L~~~~p~i~v~~~~KADs~~~~V 161 (288)
++|++||+.|+++..+|||.++|++++.|+++++++++.++.||||+++.|++|+.+|++.+|++++++++|||++|++|
T Consensus 97 ~s~~eId~~m~~~~~~nlN~l~~~~~~~~i~~~~~l~~~p~~vlVD~~~~p~~y~~~L~~~~p~~~~~~~~KgDs~~~sV 176 (301)
T 3kio_A 97 LSPNLISTSMLGRVKYNLNSLSHDTAAGLIQYALDQNVNVTQVFVDTVGMPETYQARLQQHFPGIEVTVKAKADSLFPVV 176 (301)
T ss_dssp ECHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHHHHTTCCEEEEEEECSSCCHHHHHHHHHSSTTSEEEEETTGGGTSHHH
T ss_pred cCHHHHHHHhhhcccccHHHHHHHHHHHHHHHHHhcCCCCCEEEECCCCChHHHHHHHhhcCCCCceEEEeccchhhhHH
Confidence 99999999998888899999999999999999988889999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHhhhhhhcccccCCCCcccCccc---------ccccccCCCcccccccHhHHHhh-hccceeEee
Q 023038 162 SGASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGD---------HKHIIFGFPSLVRFSWGTCTSHF-KDIVEVLWE 231 (288)
Q Consensus 162 AAASIiAKV~RD~~m~~~~~~~~~~~~~~~~GsGYPsd---------h~~~~~G~p~~~R~Sw~t~~~~l-~~~~~~~~~ 231 (288)
|||||||||+||++|++|.+.+.......+|||||||| ++++.||+|++||+||+|+++++ +++++|.|+
T Consensus 177 AAASIlAKV~RD~~M~~~~f~e~l~~~~~~~GsGYPSDp~T~~~L~~~~~~~~G~p~~vR~SW~tvk~~l~~~~~~v~w~ 256 (301)
T 3kio_A 177 SAASIFAKVARDKAVKNWQFVENLQDLDSDYGSGYPNDPKTKAWLRKHVDPVFGFPQFVRFSWSTAQAILEKEAEDVIWE 256 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCSSSTTSHHHHHHHHTTCBTTTBSCTTBCTTSHHHHHHHHHHSCCEECS
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHhhCCCCCCcCCCCHHHHHHHHHcccccCCCCccccCCcHHHHHHHhcCCceeeec
Confidence 99999999999999999987776666677899999998 55567999999999999999999 589999999
Q ss_pred cCcccccccccccccccceecccccCcccCcchhhhccCccccchhhhcccccccCC
Q 023038 232 SDEMDEDVSSRRSGKRQLKLSDIGFSSSKRRSEEIESSGKGRCKFLEARKLEQLTHF 288 (288)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~r~l~~~~~~ 288 (288)
+|+++++..+ ..+|++| |..... ...+++||+||++|+|++|+++
T Consensus 257 ~~~~~~~~~~------~~~~~~~-f~~~~~-----~~~~~~~~~~f~~~~l~~~~~~ 301 (301)
T 3kio_A 257 DSEAEEDPER------PGKITSY-FSQGPQ-----TCRPQAPHRYFQERGLEAASSL 301 (301)
T ss_dssp CC-------------------------------------------------------
T ss_pred cccccccccc------chhHHHH-hcCCCc-----cccccccchhhHhhcccccccC
Confidence 8875432211 1388887 221111 1114789999999999999875
No 2
>1eke_A Ribonuclease HII; endonuclease, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: MES; 2.00A {Methanocaldococcus jannaschii} SCOP: c.55.3.1
Probab=100.00 E-value=1.1e-59 Score=425.51 Aligned_cols=198 Identities=33% Similarity=0.508 Sum_probs=173.9
Q ss_pred ceecccccCcCCcccceeeEEEEecccccccccccCcCCCCCCCHHHHHHHHHHhhhcCcccEEEEEECHhhHhHHhhcc
Q 023038 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGWAVDIIDPRELSAKMLNK 94 (288)
Q Consensus 15 ~viGiDEAGRGpv~GPmVvaav~~~~~~~~~L~~~gv~DSK~Ls~~kRe~L~~~I~~~~~~~~~v~~isp~eId~~~~~~ 94 (288)
.++|||||||||+|||||+|||++|.+....|..+||+|||+||+++|++||+.|++. + .|+|.+++|++||++|.
T Consensus 2 ~i~GvDEaGRGplaGPvv~aavil~~~~~~~l~~~gv~DSK~Ls~~~Re~L~~~I~~~-~-~~~v~~~~~~eId~~~~-- 77 (230)
T 1eke_A 2 IIIGIDEAGRGPVLGPMVVCAFAIEKEREEELKKLGVKDSKELTKNKRAYLKKLLENL-G-YVEKRILEAEEINQLMN-- 77 (230)
T ss_dssp EEEEEEEECSSCSBSCEEEEEEEEEGGGHHHHHTTTCC---CCCHHHHHHHHHHHHHH-S-EEEEEEECHHHHHHHTT--
T ss_pred CEecccCCCCCCchhhheEEEEEEchhhhhhhhhcCCCCcccCCHHHHHHHHHHHHHh-C-CEEEEEeCHHHHhcccc--
Confidence 4789999999999999999999999987777788999999999999999999999985 4 89999999999999985
Q ss_pred ccchHHHHHHHHHHHHHHHHHcc---CCCcceEEECCCC-ChHHHHHHhhccC--------CCcceEEeecCCccCcchh
Q 023038 95 NKINLNEISHDSAIGLITRVLNI---GILLTEVYLDTVG-DAEKYQAKLSQRF--------PSIKFVVSKKADSLYPVVS 162 (288)
Q Consensus 95 ~~~NlN~l~~~~~~~li~~~l~~---~~~~~~v~VD~~g-~~~~y~~~L~~~~--------p~i~v~~~~KADs~~~~VA 162 (288)
.+|||++++.+|.++|+.+... +++++.|+||+++ ++++|+.+|.+.+ |.+++++++|||++|++||
T Consensus 78 -~~Ni~~a~~~a~~~ai~~l~~~~~~~~~~~~vliD~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~KgD~~~~~VA 156 (230)
T 1eke_A 78 -SINLNDIEINAFSKVAKNLIEKLNIRDDEIEIYIDACSTNTKKFEDSFKDKIEDIIKERNLNIKIIAEHKADAKYPVVS 156 (230)
T ss_dssp -TSCHHHHHHHHHHHHHHHHHHHTTCCSSEEEEEEECCSSCHHHHHHHHHHHHHHHHTTTTCEEEEEEETTGGGTCHHHH
T ss_pred -ccCHHHHHHHHHHHHHHHHhhhhccCCCCCEEEECCCCCChHHHHHHHhhhhcccccccCCCCceEEEECcccccHHHH
Confidence 6899999999999999988764 5678899999998 7788988887544 4478899999999999999
Q ss_pred hhhHHHHHHHHHHHHhhhhhhcccccCCCCcccCccc-----cccc---ccC-CCcccccccHhHHHhhh
Q 023038 163 GASIVAKVTRDRTLRGWIFEETAENMHRNFGSGYPGD-----HKHI---IFG-FPSLVRFSWGTCTSHFK 223 (288)
Q Consensus 163 AASIiAKV~RD~~m~~~~~~~~~~~~~~~~GsGYPsd-----h~~~---~~G-~p~~~R~Sw~t~~~~l~ 223 (288)
||||||||+||++|++|+..|| +||+||||| |+.. .|| +|++||+||+|++++++
T Consensus 157 AASIlAKv~RD~~m~~l~~~yp------~~gkGY~td~~t~~~l~~~~~~~G~~~~~hR~Sf~~~~~~l~ 220 (230)
T 1eke_A 157 AASIIAKAERDEIIDYYKKIYG------DIGSGYPSDPKTIKFLEDYFKKHKKLPDIARTHWKTCKRILD 220 (230)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTS------CCTTSSTTSHHHHHHHHHHHHHHSSCCTTBCTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcC------CCCCcCCchHHHHHHHHHHHHHhCCCCHHHcCCCHhHHHHHH
Confidence 9999999999999999998876 477999997 6652 477 88999999999999883
No 3
>1i39_A Ribonuclease HII, RNAse HII; mixed beta sheet, helix-loop-helix, hydrolase; 1.95A {Archaeoglobus fulgidus} SCOP: c.55.3.1 PDB: 1i3a_A 3p83_D*
Probab=100.00 E-value=9.8e-59 Score=417.83 Aligned_cols=195 Identities=32% Similarity=0.466 Sum_probs=169.8
Q ss_pred cCCC-CceecccccCcCCcccceeeEEEEecccccccccccCcCCCCCCCHHHHHHHHHHhhhcCcccEEEEEECHhhHh
Q 023038 10 WASN-PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGWAVDIIDPRELS 88 (288)
Q Consensus 10 ~~~~-~~viGiDEAGRGpv~GPmVvaav~~~~~~~~~L~~~gv~DSK~Ls~~kRe~L~~~I~~~~~~~~~v~~isp~eId 88 (288)
++++ .+++|||||||||+|||||+|||++|.+. .|..+||+|||+||+++|++||++|++. +. |+|.+++|++||
T Consensus 15 ~~~g~~~i~GvDEaGRGplaGPvV~aavil~~~~--~l~~~gv~DSKkLs~~kRe~L~~~I~~~-a~-~~v~~~s~~eID 90 (225)
T 1i39_A 15 VPRGSHMKAGIDEAGKGCVIGPLVVAGVACSDED--RLRKLGVKDSKKLSQGRREELAEEIRKI-CR-TEVLKVSPENLD 90 (225)
T ss_dssp ------CEEEEEEECTTCSBSCEEEEEEEESCHH--HHHHTTCTTCTTCCHHHHHHHHHHHHHH-EE-EEEEEECHHHHH
T ss_pred ccCCCeEEEEecCCCCcCchhhhEEEEEEEcchh--hcccCCCCcCCcCCHHHHHHHHHHHHHh-CC-EEEEEECHHHHh
Confidence 4455 68999999999999999999999999864 5567899999999999999999999985 45 999999999999
Q ss_pred HHhhccccchHHHHHHHHHHHHHHHHHccCCCcceEEECCCC-ChHHHHHHhhccCCCcceEEeecCCccCcchhhhhHH
Q 023038 89 AKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG-DAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIV 167 (288)
Q Consensus 89 ~~~~~~~~~NlN~l~~~~~~~li~~~l~~~~~~~~v~VD~~g-~~~~y~~~L~~~~p~i~v~~~~KADs~~~~VAAASIi 167 (288)
+.| ..+|||++++.+|.++|+.+. ++.|+||+++ ++++|+.+|++.++ +++++++|||++|++|||||||
T Consensus 91 ~~~---~~~Ni~~a~~~am~~ai~~l~-----~~~vlvD~~~~~~~~~~~~l~~~~~-~~~~~~~KgD~~~~~VAAASIl 161 (225)
T 1i39_A 91 ERM---AAKTINEILKECYAEIILRLK-----PEIAYVDSPDVIPERLSRELEEITG-LRVVAEHKADEKYPLVAAASII 161 (225)
T ss_dssp HHT---TTSCHHHHHHHHHHHHHHHHC-----CSEEEEEESSSCCHHHHHHHHHHHC-SEEEEEETGGGTCHHHHHHHHH
T ss_pred hhc---ccccHHHHHHHHHHHHHHhCC-----CCEEEECCCCCChHHHHHHhhhcCC-CceEEEecccccchHHHHHHHH
Confidence 987 368999999999998888753 4789999998 78889988876555 6888999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhcccccCCCCcccCccc-----cccc---ccCCCcccccccHhHHHhhh
Q 023038 168 AKVTRDRTLRGWIFEETAENMHRNFGSGYPGD-----HKHI---IFGFPSLVRFSWGTCTSHFK 223 (288)
Q Consensus 168 AKV~RD~~m~~~~~~~~~~~~~~~~GsGYPsd-----h~~~---~~G~p~~~R~Sw~t~~~~l~ 223 (288)
|||+||++|++|+..|| +||+|||+| |+.. .+|+|++||+||+|++++++
T Consensus 162 AKv~RD~~m~~l~~~yp------~~gkGY~tD~~t~~hl~~~i~~~g~~~~hR~Sf~~~~~~l~ 219 (225)
T 1i39_A 162 AKVEREREIERLKEKFG------DFGSGYASDPRTREVLKEWIASGRIPSCVRMRWKTVSNLRQ 219 (225)
T ss_dssp HHHHHHHHHHHHHHHHC------CCCSSSTTSHHHHHHHHHHHHHTCCCTTBCTTSHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHCC------CCCCcCCChHHHHHHHHHhhhhcCCCHHHcCCCHHHHHHHh
Confidence 99999999999999886 467999997 5543 38999999999999999886
No 4
>1io2_A Ribonuclease HII; endonuclease, hydrolase; 2.00A {Thermococcus kodakarensis} SCOP: c.55.3.1 PDB: 2dfh_A 2dff_A 2dfe_A 1x1p_A
Probab=100.00 E-value=1.7e-58 Score=413.39 Aligned_cols=194 Identities=35% Similarity=0.546 Sum_probs=172.1
Q ss_pred ceecccccCcCCcccceeeEEEEecccccccccccCcCCCCCCCHHHHHHHHHHhhhcCcccEEEEEECHhhHhHHhhcc
Q 023038 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGWAVDIIDPRELSAKMLNK 94 (288)
Q Consensus 15 ~viGiDEAGRGpv~GPmVvaav~~~~~~~~~L~~~gv~DSK~Ls~~kRe~L~~~I~~~~~~~~~v~~isp~eId~~~~~~ 94 (288)
.++|||||||||+|||||+|||++|.+....|..+||+|||+||+++|++||+.|++. +++|+|.+++|++||+.
T Consensus 2 ~i~GvDEaGRGplaGPvv~aavil~~~~~~~l~~~gv~DSK~Ls~~~Re~L~~~I~~~-a~~~~v~~~~~~eId~~---- 76 (213)
T 1io2_A 2 KIAGIDEAGRGPVIGPMVIAAVVVDENSLPKLEELKVRDSKKLTPKRREKLFNEILGV-LDDYVILELPPDVIGSR---- 76 (213)
T ss_dssp EEEEEEEECSSCSBSCEEEEEEEEEGGGHHHHHHTTGGGCTTCCHHHHHHHHHHHHTT-CSEEEEEEECHHHHHTC----
T ss_pred CEeccCCCCCCCccchheEEEEEEChhhhhhhhhcCCCCcccCCHHHHHHHHHHHHHh-CceEEEEEECHHHHcch----
Confidence 4799999999999999999999999987677788999999999999999999999975 67899999999999853
Q ss_pred ccchHHHHHHHHHHHHHHHHHccCCCcceEEECCCC-ChHHHHHHhhccCC-CcceEEeecCCccCcchhhhhHHHHHHH
Q 023038 95 NKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG-DAEKYQAKLSQRFP-SIKFVVSKKADSLYPVVSGASIVAKVTR 172 (288)
Q Consensus 95 ~~~NlN~l~~~~~~~li~~~l~~~~~~~~v~VD~~g-~~~~y~~~L~~~~p-~i~v~~~~KADs~~~~VAAASIiAKV~R 172 (288)
.+|||++++.+|.++|+.+. ..++.+|||+++ ++++|+.+|+..+| .+++++++|||++|++||||||||||+|
T Consensus 77 -~~Ni~~a~~~a~~~ai~~l~---~~p~~vlvD~~~~~~~~~~~~l~~~~~~~~~~~~~~KgD~~~~~VAAASIlAKv~R 152 (213)
T 1io2_A 77 -EGTLNEFEVENFAKALNSLK---VKPDVIYADAADVDEERFARELGERLNFEAEVVAKHKADDIFPVVSAASILAKVTR 152 (213)
T ss_dssp -SSCHHHHHHHHHHHHHHHCS---SCCSEEEEECCSSCHHHHHHHHHHTCSSCCEEEEETTHHHHCHHHHHHHHHHHHHH
T ss_pred -hhHHHHHHHHHHHHHHHhcc---ccCCEEEECCCCCCHHHHHHHHhhccCCCCceEEEeCcccccHHHHHHHHHHHHHH
Confidence 35999999999988887643 357899999999 78889999987764 5788999999999999999999999999
Q ss_pred HHHHHhhhhhhcccccCCCCcccCccc-----cccc---ccC-CCcccccccHhHHHhhh
Q 023038 173 DRTLRGWIFEETAENMHRNFGSGYPGD-----HKHI---IFG-FPSLVRFSWGTCTSHFK 223 (288)
Q Consensus 173 D~~m~~~~~~~~~~~~~~~~GsGYPsd-----h~~~---~~G-~p~~~R~Sw~t~~~~l~ 223 (288)
|++|++|+..|| +||+||||| |+.. .|| +|++||+||+|++++++
T Consensus 153 D~~m~~l~~~y~------~~g~GY~td~~t~~~l~~~~~~~G~~~~~hR~Sf~~~~~~l~ 206 (213)
T 1io2_A 153 DRAVEKLKEEYG------EIGSGYPSDPRTRAFLENYYREHGEFPPIVRKGWKTLKKIAE 206 (213)
T ss_dssp HHHHHHHHHHHS------CCCSSCTTSHHHHHHHHHHHHHHSSCCTTBCTTCHHHHHHHH
T ss_pred HHHHHHHHHHcC------CCCCcCCchHHHHHHHHHHHHHhCCCChhhhCCCHhHHHHHH
Confidence 999999999886 467999997 6652 477 88999999999999874
No 5
>1uax_A Ribonuclease HII, ribonuclease H2; RNA*DNA hybrid ribonucleotidohydrolase, hydrolase; 2.00A {Pyrococcus horikoshii} SCOP: c.55.3.1
Probab=100.00 E-value=1.1e-57 Score=409.94 Aligned_cols=195 Identities=32% Similarity=0.555 Sum_probs=171.4
Q ss_pred ceecccccCcCCcccceeeEEEEecccccccccccCcCCCCCCCHHHHHHHHHHhhhcCcccEEEEEECHhhHhHHhhcc
Q 023038 15 CIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGWAVDIIDPRELSAKMLNK 94 (288)
Q Consensus 15 ~viGiDEAGRGpv~GPmVvaav~~~~~~~~~L~~~gv~DSK~Ls~~kRe~L~~~I~~~~~~~~~v~~isp~eId~~~~~~ 94 (288)
.++|||||||||++||||+|||++|.+....|..+||+|||+||+++|++||+.|++. ++.|+|.+++|++||+.
T Consensus 2 ~i~GvDEaGRGplaGPvv~aavil~~~~~~~l~~~gl~DSK~Ls~~~Re~L~~~I~~~-a~~~~v~~~~~~eId~~---- 76 (220)
T 1uax_A 2 KVAGVDEAGRGPVIGPLVIGVAVIDEKNIERLRDIGVKDSKQLTPGQREKLFSKLIDI-LDDYYVLLVTPKEIDER---- 76 (220)
T ss_dssp EEEEEEEECSSCSBSCEEEEEEEEEGGGHHHHHHHTGGGSTTSCHHHHHHHHHHHHHH-SSEEEEEEECHHHHHTC----
T ss_pred cEEeecCCCCCCchhhhEEEEEEEchhhhhhhhhcCCCCcccCCHHHHHHHHHHHHHh-CceEEEEEECHHHHcCh----
Confidence 3789999999999999999999999887667778899999999999999999999985 57899999999999753
Q ss_pred ccchHHHHHHHHHHHHHHHHHccCCCcceEEECCCC-ChHHHHHHhhccCC-CcceEEeecCCccCcchhhhhHHHHHHH
Q 023038 95 NKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVG-DAEKYQAKLSQRFP-SIKFVVSKKADSLYPVVSGASIVAKVTR 172 (288)
Q Consensus 95 ~~~NlN~l~~~~~~~li~~~l~~~~~~~~v~VD~~g-~~~~y~~~L~~~~p-~i~v~~~~KADs~~~~VAAASIiAKV~R 172 (288)
.+|||++++.+|.++|+.+ ...++.|+||+++ ++++|+.+|+..++ .+++++++|||++|++||||||||||+|
T Consensus 77 -~~Ni~~a~~~am~~ai~~l---~~~~~~vlvD~~~~~~~~~~~~l~~~~~~~~~~~~~~KgD~~~~~VAAASIlAKv~R 152 (220)
T 1uax_A 77 -HHSMNELEAEKFVVALNSL---RIKPQKIYVDSADVDPKRFASLIKAGLKYEATVIAEHKADAKYEIVSAASIIAKVTR 152 (220)
T ss_dssp -SSCHHHHHHHHHHHHHHTC---SSCCSEEEEECTTSCHHHHHHHHHHHCSSCCEEEEETTHHHHCHHHHHHHHHHHHHH
T ss_pred -hhHHHHHHHHHHHHHHHhc---CCCCCEEEECCCCCChHHHHHHhhhccCCCCceEEEeccchhhHHHHHHHHHHHHHH
Confidence 3599999999888777653 3456789999998 78899999987664 5788999999999999999999999999
Q ss_pred HHHHHhhhhhhcccccCCCCcccCccc-----cccc---ccC-CCcccccccHhHHHhhhc
Q 023038 173 DRTLRGWIFEETAENMHRNFGSGYPGD-----HKHI---IFG-FPSLVRFSWGTCTSHFKD 224 (288)
Q Consensus 173 D~~m~~~~~~~~~~~~~~~~GsGYPsd-----h~~~---~~G-~p~~~R~Sw~t~~~~l~~ 224 (288)
|++|++|+..|| +||+||||| |+.. .|| +|++||+||+|+++++++
T Consensus 153 D~~m~~l~~~yp------~~gkGY~td~~t~~~l~~~~~~~G~~~~~hR~Sf~~~~~~l~~ 207 (220)
T 1uax_A 153 DREIEKLKQKYG------EFGSGYPSDPRTKEWLEEYYKQYGDFPPIVRRTWETARKIEER 207 (220)
T ss_dssp HHHHHHHHHHHC------CCTTSCTTCHHHHHHHHHHHHHHSSCCTTBCTTSHHHHHHHHH
T ss_pred HHHHHHHHHHcC------CCCCcCCchHHHHHHHHHHHHHhCCCChhhcCCChhHHHHHHH
Confidence 999999999886 467999997 6652 477 889999999999998863
No 6
>2etj_A Ribonuclease HII, RNAse HII; TM0915, ribonuclease HII (EC 3.1.26.4) (RNAse HII), structur genomics, joint center for structural genomics; 1.74A {Thermotoga maritima} SCOP: c.55.3.1 PDB: 3o3g_A* 3o3f_A* 3o3h_A*
Probab=100.00 E-value=2.3e-57 Score=412.65 Aligned_cols=196 Identities=24% Similarity=0.315 Sum_probs=159.2
Q ss_pred cCCC-CceecccccCcCCcccceeeEEEEecccccccccccCcCCCCCCCHHHHHHHHHHhhhcCcccEEEEEECHhhHh
Q 023038 10 WASN-PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGWAVDIIDPRELS 88 (288)
Q Consensus 10 ~~~~-~~viGiDEAGRGpv~GPmVvaav~~~~~~~~~L~~~gv~DSK~Ls~~kRe~L~~~I~~~~~~~~~v~~isp~eId 88 (288)
|..+ .+++|||||||||++||||+|||++|.+ .+||+|||+||+++|++||+.|++. ++. +|.+++|++||
T Consensus 19 ~~~g~~~i~GvDEAGRGplaGPvV~AAVil~~~------~~Gl~DSKkLs~~kRe~L~~~I~~~-a~~-~v~~~sp~eID 90 (250)
T 2etj_A 19 YKKEFGIVAGVDEAGRGCLAGPVVAAAVVLEKE------IEGINDSKQLSPAKRERLLDEIMEK-AAV-GIGIASPEEID 90 (250)
T ss_dssp GTTTSSSEEEEEEECTTCSBSCEEEEEEEECSC------CC----------CHHHHHHHHHHHH-EEE-EEEEECHHHHH
T ss_pred HhCCCceEEEecCCCCCCchhhheEEEEEEcCC------ccCCCccccCCHHHHHHHHHHHHHh-hCC-eEEEECHHHHC
Confidence 3455 7899999999999999999999999986 4799999999999999999999975 466 99999999996
Q ss_pred HHhhccccchHHHHHHHHHHHHHHHHHccCCCcceEEECCCCChHHHHHHhhccCCCcceEEeecCCccCcchhhhhHHH
Q 023038 89 AKMLNKNKINLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVA 168 (288)
Q Consensus 89 ~~~~~~~~~NlN~l~~~~~~~li~~~l~~~~~~~~v~VD~~g~~~~y~~~L~~~~p~i~v~~~~KADs~~~~VAAASIiA 168 (288)
+ +|||+++..++.+++ .+++++++.||||+++.| + .+++++++|||++|++||||||||
T Consensus 91 ~-------~NI~~at~~Am~rAi---~~L~~~p~~vlVDg~~~~------l-----~~~~~~ivKgD~~~~sVAAASIlA 149 (250)
T 2etj_A 91 L-------YNIFNATKLAMNRAL---ENLSVKPSFVLVDGKGIE------L-----SVPGTCLVKGDQKSKLIGAASIVA 149 (250)
T ss_dssp H-------HCHHHHHHHHHHHHH---HHSSSCCSEEEEESSSCC------C-----SSCEEEETTHHHHCHHHHHHHHHH
T ss_pred H-------HhHHHHHHHHHHHHH---HhcCCCCCEEEECCCCCC------C-----CCceEEEecccccchhHHHHHHHH
Confidence 4 699999887665444 445678899999999865 1 134677899999999999999999
Q ss_pred HHHHHHHHHhhhhhhcccccCCCCcccCccc-cccc--ccCCCcccccccHhHHHhhhccceeEeecCccc
Q 023038 169 KVTRDRTLRGWIFEETAENMHRNFGSGYPGD-HKHI--IFGFPSLVRFSWGTCTSHFKDIVEVLWESDEMD 236 (288)
Q Consensus 169 KV~RD~~m~~~~~~~~~~~~~~~~GsGYPsd-h~~~--~~G~p~~~R~Sw~t~~~~l~~~~~~~~~~~~~~ 236 (288)
||+||++|++|+..||.|+|..| +||||+ |+.+ .||++++||+||+|++++++..+.+.|.++++.
T Consensus 150 KV~RD~~M~~l~~~yp~Ygf~~~--kGY~T~~h~~al~~~G~~~~HR~Sf~~v~~~l~~~~~~~w~~~~~~ 218 (250)
T 2etj_A 150 KVFRDRLMSEFHRMYPQFSFHKH--KGYATKEHLNEIRKNGVLPIHRLSFEPVLELLTDDLLREFFEKGLI 218 (250)
T ss_dssp HHHHHHHHHHHHHHCTTSCHHHH--TTCCCHHHHHHHHHHCCCTTBCTTSHHHHTTCCHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHCcccCCcCC--CcCCcHHHHHHHHHcCcCCeEECCcHHHHHHHhhccccccCCCccc
Confidence 99999999999999999998755 888887 7777 499999999999999999965588999877544
No 7
>2d0b_A RNAse HIII, ribonuclease HIII; RNA/DNA hybrid, hydrolase; 2.10A {Geobacillus stearothermophilus} PDB: 2d0a_A 2d0c_A 3asm_A
Probab=100.00 E-value=1.1e-51 Score=387.70 Aligned_cols=202 Identities=20% Similarity=0.240 Sum_probs=171.9
Q ss_pred CceecccccCcCCcccceeeEEEEecccccccccccCcCCCCCCCHHHHHHHHHHhhhcCcccEEEEEECHhhHhHHhhc
Q 023038 14 PCIMGIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGWAVDIIDPRELSAKMLN 93 (288)
Q Consensus 14 ~~viGiDEAGRGpv~GPmVvaav~~~~~~~~~L~~~gv~DSK~Ls~~kRe~L~~~I~~~~~~~~~v~~isp~eId~~~~~ 93 (288)
.+++|||||||||||||||+|||++|.+....|..+||+|||+||+++|++||+.|++. +.|+|.+++|++||+++..
T Consensus 91 ~~i~GvDEaGRGplaGPvV~aavil~~~~~~~l~~~gl~DSKkLs~~kRe~L~~~I~~~--~~~~v~~~s~~eId~l~a~ 168 (310)
T 2d0b_A 91 LSAIGSDEVGTGDYFGPIVVAAAYVDRPHIAKIAALGVKDSKQLNDEAIKRIAPAIMET--VPHAVTVLDNPQYNRWQRS 168 (310)
T ss_dssp SCEEEEEEECTTCSBSCEEEEEEEECGGGHHHHHHTCCTTGGGCCHHHHHHHHHHHHHH--SCEEEEEECHHHHHHHHHT
T ss_pred ceEEeecCCCCCCchhhhEEEEEEEchhhhhhhhhcCCCcCCcCCHHHHHHHHHHHHHh--cCeEEEEECHHHHhHHHhc
Confidence 57899999999999999999999999886666778999999999999999999999985 4899999999999987431
Q ss_pred -cccchHHHHHHHHHH-HHHHHHHccCCCcceEEECCCCChHHHHHHhhc--cCCCcceEEeecCCccCcchhhhhHHHH
Q 023038 94 -KNKINLNEISHDSAI-GLITRVLNIGILLTEVYLDTVGDAEKYQAKLSQ--RFPSIKFVVSKKADSLYPVVSGASIVAK 169 (288)
Q Consensus 94 -~~~~NlN~l~~~~~~-~li~~~l~~~~~~~~v~VD~~g~~~~y~~~L~~--~~p~i~v~~~~KADs~~~~VAAASIiAK 169 (288)
....||+.++|+.++ .+++.+ . ++.++.|+||+++.|+.|+.+|+. .++.+++++++|||++|++||||||||
T Consensus 169 ~i~~~~l~~~~~~~ai~~~i~~L-~-~~~p~~vliD~~~~~~~~~~~L~~~~~~~~~~~~~~~KgD~~~~~VAAASIlA- 245 (310)
T 2d0b_A 169 GMPQTKMKALLHNRTLVKLVDAI-A-PAEPEAIIIDEFLKRDSYFRYLSDEDRIIRERVHCLPKAESVHVSVAAASIIA- 245 (310)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHH-T-TCCCSEEEEECSSCHHHHHHHTTTCSSCCCTTEEEETTGGGTCHHHHHHHHHH-
T ss_pred cccHHHHHHHHHHHHHHHHHHhc-c-cCCCCEEEECCCCChHHHHHHHhhccccCCCceEEEeccccccHHHHHHHHHH-
Confidence 233456666776554 333432 2 478899999999999999999974 456788999999999999999999999
Q ss_pred HHHHHHHHhhhhhhcccccCCCCcccCccccccc-----ccCCCc---ccccccHhHHHhhh
Q 023038 170 VTRDRTLRGWIFEETAENMHRNFGSGYPGDHKHI-----IFGFPS---LVRFSWGTCTSHFK 223 (288)
Q Consensus 170 V~RD~~m~~~~~~~~~~~~~~~~GsGYPsdh~~~-----~~G~p~---~~R~Sw~t~~~~l~ 223 (288)
||++|++|+..+|.|+|..|+|||||+ |..+ .||+++ ++|+||+|++++++
T Consensus 246 --RD~~m~~l~~~~p~Yg~~~~kGygt~~-h~~a~~~L~~~G~~~l~~~~R~sf~t~~~~~~ 304 (310)
T 2d0b_A 246 --RYVFLEEMEQLSRAVGLLLPKGAGAIV-DEAAARIIRARGEEMLETCAKLHFANTKKALA 304 (310)
T ss_dssp --HHHHHHHHHHHHHHHTSCCCSSSSHHH-HHHHHHHHHHHCGGGHHHHBCTTSTHHHHHHH
T ss_pred --HHHHHHHHHHhCcccCCCCCcCCCCHH-HHHHHHHHHHhCCCccchhheecCHhHHHHHH
Confidence 999999999999999999999999999 6553 477654 56699999999875
No 8
>3vn5_A RNAse HIII, ribonuclease HIII; hydrolase; 1.98A {Aquifex aeolicus}
Probab=100.00 E-value=1.8e-48 Score=356.85 Aligned_cols=179 Identities=23% Similarity=0.278 Sum_probs=156.1
Q ss_pred cccccCcCCcccceeeEEEEecccccccccccCcCCCCCCCHHHHHHHHHHhhhcCcccEEEEEECHhhHhHHhhccccc
Q 023038 18 GIDEAGRGPVLGPMVYGCLYCPCSYQQTLATLNFADSKTLKEEKREELFEDLKVNDSVGWAVDIIDPRELSAKMLNKNKI 97 (288)
Q Consensus 18 GiDEAGRGpv~GPmVvaav~~~~~~~~~L~~~gv~DSK~Ls~~kRe~L~~~I~~~~~~~~~v~~isp~eId~~~~~~~~~ 97 (288)
|||||||||++||||+|||++|.+....|+.+||+|||+||+++|++||+.|++. +.|+|.+++|++||++|. ..+
T Consensus 75 GvDEaGRGplaGPvv~aavil~~~~~~~L~~~gv~DSKkLs~~kRe~L~~~I~~~--~~~~v~~~s~~eID~~~~--~~~ 150 (257)
T 3vn5_A 75 GCDESGKGDIFGSLVLCCVCIPEENYLKVSSLNPRDTKRLSDKRVERLYLALKPL--VKAYCYEIKPEEYNKLYR--KFR 150 (257)
T ss_dssp EEEEESTTCSBSCEEEEEEECCGGGHHHHHHTCTTCCTTTCHHHHHHHHHHHGGG--SEEEEEEECHHHHHHHHH--HHS
T ss_pred CccCCCCCCcccccEEEEEEEchhhhhhHhhcCCCccccCCHHHHHHHHHHHHHh--cCEEEEEECHHHHhhhcc--ccc
Confidence 9999999999999999999999987667778999999999999999999999985 789999999999999874 357
Q ss_pred hHHHHHHHHHHHHHHHHHccCCCcceEEECCCCChHHHHHHhhccCCCcceEEeecCCccCcchhhhhHHHHHHHHHHHH
Q 023038 98 NLNEISHDSAIGLITRVLNIGILLTEVYLDTVGDAEKYQAKLSQRFPSIKFVVSKKADSLYPVVSGASIVAKVTRDRTLR 177 (288)
Q Consensus 98 NlN~l~~~~~~~li~~~l~~~~~~~~v~VD~~g~~~~y~~~L~~~~p~i~v~~~~KADs~~~~VAAASIiAKV~RD~~m~ 177 (288)
|||+++..+|.++|..+... ..++.|+||+++.+. | | + +++++++|||+ |++|||||||| ||++|+
T Consensus 151 Nin~~~~~am~~Ai~~L~~~-~~~~~vlvD~~~~~~-~---l----~-~~~~~~~KgD~-~~sVAAASIlA---Rd~~m~ 216 (257)
T 3vn5_A 151 NLNKMMTHFYKLLIERVKEE-CGVSEVVVDKYQPSN-P---F----G-EDVIFETEAER-NLAVAVASIFA---RYKFLQ 216 (257)
T ss_dssp SHHHHHHHHHHHHHHHHHHH-HTCSCEEECCCSSSC-C---S----C-TTEEECBTTBC-CHHHHHHHHHH---HHHHHH
T ss_pred cHHHHHHHHHHHHHHHhhcc-CCCCEEEECCCCCcc-c---C----C-CCeEEEEccch-hHHHHHHHHHH---HHHHHH
Confidence 99999998888888876543 125789999998643 1 2 1 46888999999 99999999999 999999
Q ss_pred hhhhhhcccccCCCCcccCccc-cccc--ccCCCcccccccH
Q 023038 178 GWIFEETAENMHRNFGSGYPGD-HKHI--IFGFPSLVRFSWG 216 (288)
Q Consensus 178 ~~~~~~~~~~~~~~~GsGYPsd-h~~~--~~G~p~~~R~Sw~ 216 (288)
.|+..+|.|+|..| +|||+. |+.+ .+|++++||.||.
T Consensus 217 ~l~~~~p~Ygf~~~--kGYgT~~H~~Al~~~G~~~~~rl~f~ 256 (257)
T 3vn5_A 217 SLKEVERELGIKIP--KGTSKEVKELAKSLKNPERFIKLNFN 256 (257)
T ss_dssp HHHHHHHHHCSCCC--CSCCHHHHHHHHTCSSGGGTBCGGGC
T ss_pred HHHHhCccCCCcCC--CCCCcHHHHHHHHHHCCCHHHHhccC
Confidence 99999999999866 777776 8887 5999999999994
No 9
>2f8e_A VPG protein; RNA-dependent RNA polymerase , protein primer, transferase; HET: U5P; 2.90A {Foot-and-mouth disease virus - type C} PDB: 2d7s_B
Probab=52.84 E-value=3.6 Score=23.99 Aligned_cols=7 Identities=57% Similarity=1.374 Sum_probs=5.6
Q ss_pred CCcccce
Q 023038 25 GPVLGPM 31 (288)
Q Consensus 25 Gpv~GPm 31 (288)
||++|||
T Consensus 1 gpyagpl 7 (26)
T 2f8e_A 1 GPYAGPL 7 (26)
T ss_pred CCcCCch
Confidence 7888887
No 10
>1jr5_A 10 kDa anti-sigma factor; all-alpha, helix-turn-helix, coiled-coil, transcription; NMR {Enterobacteria phage T4} SCOP: a.150.1.1 PDB: 1tkv_A 1tl6_A 1tlh_A
Probab=30.34 E-value=12 Score=28.49 Aligned_cols=20 Identities=25% Similarity=0.458 Sum_probs=17.8
Q ss_pred cchhhhhHHHHHHHHHHHHh
Q 023038 159 PVVSGASIVAKVTRDRTLRG 178 (288)
Q Consensus 159 ~~VAAASIiAKV~RD~~m~~ 178 (288)
-+||-|||+-|.-||.+++.
T Consensus 10 eIia~aSiLIKfg~ddIle~ 29 (90)
T 1jr5_A 10 EIITVASILIKFSREDIVEN 29 (90)
T ss_dssp HHHHHHHHHHHTTCHHHHTC
T ss_pred HHHHHHHHHHHcChHHHHHh
Confidence 47899999999999998876
No 11
>2kih_A Matrix protein 2; S31N, proton channel, cell membrane, disulfide bond, hydrogen ION transport, ION transport, ionic channel, membrane; NMR {Influenza a virus} PDB: 2rlf_A* 2l0j_A 2kwx_A
Probab=24.68 E-value=23 Score=22.97 Aligned_cols=16 Identities=38% Similarity=0.476 Sum_probs=11.3
Q ss_pred CCccCcchhhhhHHHH
Q 023038 154 ADSLYPVVSGASIVAK 169 (288)
Q Consensus 154 ADs~~~~VAAASIiAK 169 (288)
.|+.-|.|.||||+-=
T Consensus 3 ~dssdplv~aa~iiGI 18 (43)
T 2kih_A 3 NDSSDPLVVAANIIGI 18 (43)
T ss_dssp ---CCHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHH
Confidence 3666799999999984
No 12
>2zzd_C Thiocyanate hydrolase subunit gamma; scnase, cobalt, metalloprotein, sulfenic acid, sulfinic acid, nitrIle hydratase, carbonyl sulfide; HET: FRU TLA BGC; 1.78A {Thiobacillus thioparus} PDB: 2dxc_C* 2dxb_C 2dd5_C* 2dd4_C*
Probab=23.28 E-value=78 Score=28.06 Aligned_cols=39 Identities=23% Similarity=0.239 Sum_probs=22.7
Q ss_pred hhhhhHHHHHHHHHHHHhh-----hhhhcccccCC----CCcccCccc
Q 023038 161 VSGASIVAKVTRDRTLRGW-----IFEETAENMHR----NFGSGYPGD 199 (288)
Q Consensus 161 VAAASIiAKV~RD~~m~~~-----~~~~~~~~~~~----~~GsGYPsd 199 (288)
--.|-||||..-|-..+.+ ...-...++.. .-|.|||+|
T Consensus 62 ~~GArvVArAW~DP~fk~~Ll~d~~aa~~elG~~g~~~~ptg~~~p~~ 109 (243)
T 2zzd_C 62 LPAARLVAKAWLDPEYKKLCIEDGVEASKAVGVNWVTSPPTQFGTPSD 109 (243)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHCHHHHHGGGTCCTTTSSTTSSCCTTT
T ss_pred CCcceEEEeecCCHHHHHHHHHChHHHHHHcCCCccccccccccCCCC
Confidence 3467889987655444443 22222334433 348899999
No 13
>2ljb_A M2 protein, BM2 protein chimera; M2 channel, transport protein; NMR {Influenza a virus} PDB: 2ljc_A*
Probab=20.33 E-value=35 Score=21.31 Aligned_cols=15 Identities=47% Similarity=0.583 Sum_probs=10.8
Q ss_pred CCccCcchhhhhHHH
Q 023038 154 ADSLYPVVSGASIVA 168 (288)
Q Consensus 154 ADs~~~~VAAASIiA 168 (288)
.||.-|.|.||||+-
T Consensus 3 ~dSsDplviaA~Iig 17 (35)
T 2ljb_A 3 NDSSDPLVVAASIIG 17 (35)
T ss_dssp ---CCTHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHH
Confidence 366679999999997
Done!