BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023041
(288 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A8WFS8|PGAP3_DANRE Post-GPI attachment to proteins factor 3 OS=Danio rerio GN=pgap3
PE=2 SV=1
Length = 316
Score = 129 bits (323), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 75/217 (34%), Positives = 106/217 (48%), Gaps = 24/217 (11%)
Query: 23 DASAGDADPLYRACVKQCEETGCVGQKCFPHCKFSSDGASINGPWYMQEPLYLQWKKWDC 82
AS GD +P+YR CVK C C G A + G + +P Y+ W C
Sbjct: 15 SASQGDKEPVYRDCVKHCVRANCTG-------------ARLRG-FQSTQPPYMALTGWTC 60
Query: 83 LSDCRYNCMVDREIKRDALGHGPVKYHGKWPFIRVYGIQEPASVAFSVLNLAMHFHGWLS 142
DCRY CM A G+ ++HGKWPF R +EPAS S+LN G
Sbjct: 61 RDDCRYQCMWTTVGLYQAEGYSIPQFHGKWPFARFLCFEEPASALASLLN------GLAC 114
Query: 143 FFILLYYKLPLKQTKKAYYEFSPLWHIYGFLSMNSWFWSAVFHSRDVDLTEKFDYSSAVA 202
+LL Y+ + Y+ + + +S+N+WFWS VFH+RD LTEK DY A A
Sbjct: 115 LLMLLRYRSAVPCQSPMYHTITA----FSLVSLNAWFWSTVFHTRDTYLTEKMDYFCASA 170
Query: 203 LLGFSLILAILRSFNVRDEAARVMVAAPLLAFVTTHI 239
++ +S+ L +R+ +R A MV L+ T+H+
Sbjct: 171 VILYSIYLCCVRTLGLRRPAISSMVGVLLILAFTSHV 207
>sp|Q0VFE3|PGAP3_XENTR Post-GPI attachment to proteins factor 3 OS=Xenopus tropicalis
GN=pgap3 PE=2 SV=1
Length = 316
Score = 125 bits (315), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 82/234 (35%), Positives = 119/234 (50%), Gaps = 31/234 (13%)
Query: 9 VALFVVLSCLLGVLDASAGDADPLYRACVKQCEETGCVGQKCFPHCKFSSDGASINGPWY 68
+A F+VL L GV+ AS GD +P+YR CV CE C G + +D +
Sbjct: 1 MAPFLVLF-LAGVVAASRGDREPVYRDCVTLCERNNCTGSRL-------TDFRA------ 46
Query: 69 MQEPLYLQWKKWDCLSDCRYNCM---VDREIKRDALGHGPVKYHGKWPFIRVYGIQEPAS 125
++PLY++ W CL DCRY CM V +K GH ++HGKWPF R QEPAS
Sbjct: 47 -EQPLYMRVTGWTCLDDCRYQCMWYTVSLYLKE---GHEVPQFHGKWPFSRFLFFQEPAS 102
Query: 126 VAFSVLNLAMHFHGWLSFFILLYYKLPLKQTKKAYYEFSPLWHIYGFLSMNSWFWSAVFH 185
S LN G S +LL Y+ + + + Y + +S+N+WFWS +FH
Sbjct: 103 ALASFLN------GVASLLMLLRYRSSVPSSCQMYRTCLA----FSMVSVNAWFWSTIFH 152
Query: 186 SRDVDLTEKFDYSSAVALLGFSLILAILRSFNVRDEAARVMVAAPLLAFVTTHI 239
+RD LTEK DY A +++ S+ L +R+F ++ + A L+ H+
Sbjct: 153 TRDTALTEKMDYFCASSVILHSIYLCCMRTFGLQYPSIANGFGAFLVLLFACHV 206
>sp|Q68EV0|PGAP3_XENLA Post-GPI attachment to proteins factor 3 OS=Xenopus laevis GN=pgap3
PE=2 SV=1
Length = 317
Score = 125 bits (314), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 81/234 (34%), Positives = 117/234 (50%), Gaps = 31/234 (13%)
Query: 9 VALFVVLSCLLGVLDASAGDADPLYRACVKQCEETGCVGQKCFPHCKFSSDGASINGPWY 68
+A F+VL L GV+ AS GD +P+YR CV C++ C G + +
Sbjct: 1 MAPFLVLF-LAGVVSASRGDREPVYRDCVTVCDQNNCTGFRL--------------RDFR 45
Query: 69 MQEPLYLQWKKWDCLSDCRYNCM---VDREIKRDALGHGPVKYHGKWPFIRVYGIQEPAS 125
Q+PLY++ W CL DCRY CM V +K GH ++HGKWPF R QEPAS
Sbjct: 46 AQQPLYMRLTGWTCLDDCRYKCMWYTVSLYLKE---GHEVPQFHGKWPFSRFLFFQEPAS 102
Query: 126 VAFSVLNLAMHFHGWLSFFILLYYKLPLKQTKKAYYEFSPLWHIYGFLSMNSWFWSAVFH 185
S LN G S +L Y+ + + + Y + +S+N+WFWS +FH
Sbjct: 103 ALASFLN------GVASLLMLFRYRSSVPSSCQMYRTCLA----FSMVSVNAWFWSTIFH 152
Query: 186 SRDVDLTEKFDYSSAVALLGFSLILAILRSFNVRDEAARVMVAAPLLAFVTTHI 239
+RD LTEK DY A +++ S+ L +R+F ++ + A L+ HI
Sbjct: 153 TRDTALTEKMDYFCASSVILHSIYLCCMRTFGLQYPSIANAFGAFLVLLFACHI 206
>sp|A2A559|PGAP3_MOUSE Post-GPI attachment to proteins factor 3 OS=Mus musculus GN=Pgap3
PE=2 SV=1
Length = 320
Score = 124 bits (312), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 78/224 (34%), Positives = 113/224 (50%), Gaps = 30/224 (13%)
Query: 19 LGVLDASAGDADPLYRACVKQCEETGCVGQKCFPHCKFSSDGASINGPWYMQEPLYLQWK 78
+G+ S GD +P+YR CV +CEE C G H + ++P+Y+
Sbjct: 15 VGLAGGSQGDREPVYRDCVLRCEERNCSGDA-LKHFR-------------SRQPIYMSLA 60
Query: 79 KWDCLSDCRYNCMVDREIKRDALGHGPVKYHGKWPFIRVYGIQEPASVAFSVLNLAMHFH 138
W C DC+Y CM GH ++HGKWPF R IQEPAS S+LN
Sbjct: 61 GWTCRDDCKYECMWFTVGLYLQEGHRVPQFHGKWPFSRFLFIQEPASAVASLLN------ 114
Query: 139 GWLSFFILLYYKLPLKQTKKAYYEFSPLWHI---YGFLSMNSWFWSAVFHSRDVDLTEKF 195
G S +L Y+ + + SP++H + ++S+N+WFWS VFH+RD DLTEK
Sbjct: 115 GLASLVMLCRYRASVPAS-------SPMYHTCMAFAWVSLNAWFWSTVFHTRDTDLTEKM 167
Query: 196 DYSSAVALLGFSLILAILRSFNVRDEAARVMVAAPLLAFVTTHI 239
DY A A++ S+ L +R+ ++ + A LL +T HI
Sbjct: 168 DYFCASAVILHSVYLCCVRTVGLQHPSVASAFGALLLLLLTGHI 211
>sp|Q96FM1|PGAP3_HUMAN Post-GPI attachment to proteins factor 3 OS=Homo sapiens GN=PGAP3
PE=2 SV=2
Length = 320
Score = 124 bits (312), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 76/219 (34%), Positives = 109/219 (49%), Gaps = 30/219 (13%)
Query: 24 ASAGDADPLYRACVKQCEETGCVGQKCFPHCKFSSDGASINGPWYMQEPLYLQWKKWDCL 83
S GD +P+YR CV QCEE C G ++N + ++P+Y+ W C
Sbjct: 20 GSQGDREPVYRDCVLQCEEQNC-------------SGGALNH-FRSRQPIYMSLAGWTCR 65
Query: 84 SDCRYNCMVDREIKRDALGHGPVKYHGKWPFIRVYGIQEPASVAFSVLNLAMHFHGWLSF 143
DC+Y CM GH ++HGKWPF R QEPAS S LN G S
Sbjct: 66 DDCKYECMWVTVGLYLQEGHKVPQFHGKWPFSRFLFFQEPASAVASFLN------GLASL 119
Query: 144 FILLYYKLPLKQTKKAYYEFSPLWHI---YGFLSMNSWFWSAVFHSRDVDLTEKFDYSSA 200
+L Y+ + + SP++H + ++S+N+WFWS VFH+RD DLTEK DY A
Sbjct: 120 VMLCRYRTFVPAS-------SPMYHTCVAFAWVSLNAWFWSTVFHTRDTDLTEKMDYFCA 172
Query: 201 VALLGFSLILAILRSFNVRDEAARVMVAAPLLAFVTTHI 239
++ S+ L +R+ ++ A A LL +T H+
Sbjct: 173 STVILHSIYLCCVRTVGLQHPAVVSAFRALLLLMLTVHV 211
>sp|A2V7M9|PGAP3_CRIGR Post-GPI attachment to proteins factor 3 OS=Cricetulus griseus
GN=PGAP3 PE=2 SV=1
Length = 320
Score = 119 bits (298), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 71/198 (35%), Positives = 101/198 (51%), Gaps = 30/198 (15%)
Query: 25 SAGDADPLYRACVKQCEETGCVGQKCFPHCKFSSDGASINGPWYMQEPLYLQWKKWDCLS 84
S GD +P+YR CV +CEE C G H + +P+Y+ W C
Sbjct: 21 SQGDREPVYRDCVLRCEERNCSGDA-LKHFR-------------SLQPIYMSLAGWTCRD 66
Query: 85 DCRYNCMVDREIKRDALGHGPVKYHGKWPFIRVYGIQEPASVAFSVLNLAMHFHGWLSFF 144
DC+Y CM GH ++HGKWPF R IQEPAS S+LN G S
Sbjct: 67 DCKYECMWITVGLYLQEGHRVPQFHGKWPFSRFLFIQEPASAVASLLN------GLASLV 120
Query: 145 ILLYYKLPLKQTKKAYYEFSPLWHI---YGFLSMNSWFWSAVFHSRDVDLTEKFDYSSAV 201
+L Y+ + + SP++H + ++S+N+WFWS VFH+RD DLTEK DY A
Sbjct: 121 MLCRYRASVPAS-------SPMYHTCMAFAWVSLNAWFWSTVFHTRDTDLTEKMDYFCAS 173
Query: 202 ALLGFSLILAILRSFNVR 219
A++ S+ L +R+ ++
Sbjct: 174 AVILHSIYLCCVRTVGLQ 191
>sp|Q7K0P4|PGAP3_DROME Post-GPI attachment to proteins factor 3 OS=Drosophila melanogaster
GN=CG3271 PE=1 SV=2
Length = 326
Score = 117 bits (294), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 73/239 (30%), Positives = 120/239 (50%), Gaps = 26/239 (10%)
Query: 3 MATRNWVALFVVLSCLLGVLDASAGDADPLYRACVKQCEETGCVGQKCFPHCKFSSDGAS 62
M++R+ A+ ++L L+ AS GD + C + CE T C S+DG
Sbjct: 1 MSSRSLSAIVLLLGALVTACLASNGDRTQFFHNCRQNCERTNC-----------SADGLE 49
Query: 63 IN--GPWYMQEPLYLQWKKWDCLSDCRYNCMVDREIKRDALGHGPVKYHGKWPFIRVYGI 120
I + Q+ ++ + +W C +C+Y CM G +++GKWPF+R+ G+
Sbjct: 50 IQEQAVKFYQQSVFDRLFQWSCADECQYGCMWRTVFAFFERGWPIPQFYGKWPFLRLLGM 109
Query: 121 QEPASVAFSVLNLAMHFHGWLSFFILLYYKLPLKQTKKAYYEFSPLWHIYGFLSMNSWFW 180
QEPASV FS LN +H +L ++ ++ Y L HI+ S+N W W
Sbjct: 110 QEPASVIFSCLNFVVHLR------LLRKFRREVRPDSPCYM----LTHIFAVTSLNGWIW 159
Query: 181 SAVFHSRDVDLTEKFDYSSAVALLGFSLILAILRSFNVRDEAARVMVAAPLLAFVTTHI 239
SA+FH+RD LTE DY+ A +++ SL + ++R + R ++ LAF++ +I
Sbjct: 160 SAIFHTRDFPLTELLDYAFAYSIILCSLYVMVMRMLHRYSLFLRGVIT---LAFLSYYI 215
>sp|A7YWP2|PGAP3_BOVIN Post-GPI attachment to proteins factor 3 OS=Bos taurus GN=PGAP3
PE=2 SV=1
Length = 319
Score = 116 bits (291), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 73/215 (33%), Positives = 103/215 (47%), Gaps = 24/215 (11%)
Query: 25 SAGDADPLYRACVKQCEETGCVGQKCFPHCKFSSDGASINGPWYMQEPLYLQWKKWDCLS 84
S GD +P+YR CV +CEE C G H + ++P+Y+ W C
Sbjct: 21 SQGDREPVYRDCVLRCEERNCSGGA-LKHFR-------------SRQPIYMSLAGWTCRD 66
Query: 85 DCRYNCMVDREIKRDALGHGPVKYHGKWPFIRVYGIQEPASVAFSVLNLAMHFHGWLSFF 144
DC+Y CM G ++HGKWPF R QEPAS S LN G S
Sbjct: 67 DCKYECMWVTVGLYLQEGQKVPQFHGKWPFSRFLCFQEPASAVASFLN------GLASLV 120
Query: 145 ILLYYKLPLKQTKKAYYEFSPLWHIYGFLSMNSWFWSAVFHSRDVDLTEKFDYSSAVALL 204
+L Y+ + + Y P + ++S+N+WFWS VFH+RD DLTEK DY A ++
Sbjct: 121 MLCRYRTSVPASSPMY----PTCVAFAWVSLNAWFWSTVFHTRDTDLTEKMDYFCASTVI 176
Query: 205 GFSLILAILRSFNVRDEAARVMVAAPLLAFVTTHI 239
S+ L +R+ ++ A A LL +T H+
Sbjct: 177 LHSIYLCCVRTVGLQHPAMASAFRALLLLLLTAHV 211
>sp|Q9P6N9|PER1_SCHPO Protein PER1 homolog OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=SPAC823.07 PE=3 SV=1
Length = 331
Score = 115 bits (288), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 77/196 (39%), Positives = 102/196 (52%), Gaps = 27/196 (13%)
Query: 11 LFVVLSCLLGVLDASAGDADPLYRACVKQCEETGCVGQKCFPHCKFSSDGASINGPWYMQ 70
LF LS L + ASAGD P+Y +CV +C E C G SD + +
Sbjct: 12 LFTALS-LFRQISASAGDLHPVYVSCVNRCIENKCHGNP--------SDTSKL------- 55
Query: 71 EPLYLQWKKWDCLSDCRYNCMVDREIKRDALGHGPVKYHGKWPFIRVYGIQEPASVAFSV 130
PL L+ +WDC S+C Y C + E A +YHGKW FIRV+GIQE SV FS+
Sbjct: 56 -PLDLKLFRWDCGSNCGYECEITAENYFAAHNLPSQQYHGKWYFIRVFGIQELFSVFFSM 114
Query: 131 LNLAMHFHGWLSFFILLYYKLPLKQTKKAYYEFSPLWHIYGFLSMNSWFWSAVFHSRDVD 190
LN +H++G + ++ +P + K W I G MN+W WS+VFH RD
Sbjct: 115 LNFMIHYNG----YHIMRRCIPDEHPAK---RLCLSWAIVG---MNAWVWSSVFHIRDTP 164
Query: 191 LTEKFDYSSAVALLGF 206
+TEK DY SA A + F
Sbjct: 165 ITEKLDYFSAGAFVLF 180
>sp|P25625|PER1_YEAST Protein PER1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=PER1 PE=1 SV=1
Length = 357
Score = 82.0 bits (201), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 71/241 (29%), Positives = 111/241 (46%), Gaps = 21/241 (8%)
Query: 9 VALFVVLSCLLGVLDASAGDADPLYRACVKQCEETGCVGQKCFPHCKFSSDGASING--- 65
V + +++ C L + S GD + C CE ++C P+ + + N
Sbjct: 5 VVVTLLVHCFL--VTCSPGDNLDEFIDCTYACE----YNRRC-PNSQINYIDPETNMFHD 57
Query: 66 -PWYMQEPLYLQWKKWDCLSDCRYNCMVDREIKRDALGHGPVKYHGKWPFIRVYGIQEPA 124
++ PLY + WDC+SDC Y C R ++HGKWPF+RV G QE
Sbjct: 58 IEFFDTPPLYSKLLFWDCISDCDYQCQHIITRWRIDEEEEIYQFHGKWPFLRVLGTQEFF 117
Query: 125 SVAFSVLNLAMHFHGWLSFFILLYYKLPLKQTKKAYYEFSPLWHIYGFLS---MNSWFWS 181
S FS+ N H+ G++ F ++ + ++ S L Y +++ M +W S
Sbjct: 118 STIFSIGNFIPHYKGFVKFSRIIREEGDRRRKNSR----SILIWNYLYVTVAGMLAWTAS 173
Query: 182 AVFHSRDVDLTEKFDYSSA--VALLGFSLILAILRSFNVRDEAARVMVAAPLLAFVTTHI 239
+VFH RD+ +TEK DY A L GF I A + S + + A+ A+ + A HI
Sbjct: 174 SVFHCRDLIITEKLDYFFAGLTVLTGFHAIFARMTSMFLYPKIAQAFTAS-VAAIFALHI 232
Query: 240 L 240
L
Sbjct: 233 L 233
>sp|Q54BK0|NFX1_DICDI Transcriptional repressor NF-X1 homolog OS=Dictyostelium discoideum
GN=nfx1 PE=3 SV=1
Length = 1506
Score = 31.6 bits (70), Expect = 6.1, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 17 CLLGVLDASAGDADPLYRACVKQCEET-GCVGQKCFPHC 54
C G +D S D DP + +C ++C+ T C KC C
Sbjct: 552 CGSGSIDTSQSDDDPRFFSCAEKCDRTLDCGNHKCQRTC 590
>sp|O23617|TPS5_ARATH Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 5
OS=Arabidopsis thaliana GN=TPS5 PE=1 SV=2
Length = 862
Score = 31.2 bits (69), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 69/176 (39%), Gaps = 26/176 (14%)
Query: 136 HFHGWLSFFI--LLYYKLPLKQTKKAYYEFSPLWHIYGFLSMNSWFWSAVFH--SRDVDL 191
++HG+ + L +Y LPL ++ S LW Y LS+N F V S D D
Sbjct: 145 YYHGFCKQHLWPLFHYMLPLTPDLGGRFDRS-LWQAY--LSVNKIFADKVMEVISPDDDF 201
Query: 192 TEKFDYSSAV-----------ALLGFSL-----ILAILRSFNVRDEAARVMVAAPLLAFV 235
DY V LGF L I R+ VR+E R ++ A L+ F
Sbjct: 202 VWVHDYHLMVLPTFLRKRFNRVKLGFFLHSPFPSSEIYRTLPVRNELLRALLNADLIGFH 261
Query: 236 TTHILMEHESLCCH--GSGSASHLGNLGW-YHSASFSLEVVGGGVRRCPCNAARNL 288
T S C G S G +G Y+ + S++++ G+ + NL
Sbjct: 262 TFDYARHFLSCCSRMLGLSYQSKRGTIGLEYYGRTVSIKILPVGIHISQLQSILNL 317
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.327 0.139 0.472
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 107,764,856
Number of Sequences: 539616
Number of extensions: 4313290
Number of successful extensions: 9526
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 9486
Number of HSP's gapped (non-prelim): 13
length of query: 288
length of database: 191,569,459
effective HSP length: 116
effective length of query: 172
effective length of database: 128,974,003
effective search space: 22183528516
effective search space used: 22183528516
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 61 (28.1 bits)