Query 023041
Match_columns 288
No_of_seqs 126 out of 229
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 08:01:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023041.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023041hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2970 Predicted membrane pro 100.0 7.8E-85 1.7E-89 604.5 15.8 249 10-280 6-272 (319)
2 PF04080 Per1: Per1-like ; In 100.0 2.9E-78 6.3E-83 560.1 14.4 201 70-280 2-228 (267)
3 COG5237 PER1 Predicted membran 100.0 9.5E-69 2E-73 488.1 15.2 243 12-280 6-272 (319)
4 PF12036 DUF3522: Protein of u 91.5 0.45 9.9E-06 42.4 5.8 91 171-262 34-137 (186)
5 PF03006 HlyIII: Haemolysin-II 86.4 3.1 6.8E-05 36.5 7.4 42 168-209 45-93 (222)
6 TIGR01065 hlyIII channel prote 76.6 20 0.00043 32.1 8.9 43 167-209 39-86 (204)
7 PF10277 Frag1: Frag1/DRAM/Sfk 62.3 84 0.0018 27.1 9.6 91 112-209 41-133 (215)
8 PF11416 Sed5p: Integral membr 55.7 7.2 0.00016 25.1 1.2 20 25-44 3-22 (29)
9 PF05875 Ceramidase: Ceramidas 47.2 2.3E+02 0.005 26.0 13.3 67 120-201 24-90 (262)
10 COG5102 SFT2 Membrane protein 46.4 1.3E+02 0.0027 27.3 7.9 19 244-262 155-173 (201)
11 PF10709 DUF2511: Protein of u 33.6 17 0.00037 29.0 0.5 13 106-118 5-17 (87)
12 COG0649 NuoD NADH:ubiquinone o 25.5 1.5E+02 0.0033 29.9 5.6 72 188-262 67-140 (398)
13 KOG0748 Predicted membrane pro 21.3 7.2E+02 0.016 23.7 10.8 35 181-216 98-139 (286)
14 PRK15087 hemolysin; Provisiona 20.0 3.2E+02 0.007 24.8 6.3 41 168-208 55-99 (219)
No 1
>KOG2970 consensus Predicted membrane protein [Function unknown]
Probab=100.00 E-value=7.8e-85 Score=604.50 Aligned_cols=249 Identities=40% Similarity=0.710 Sum_probs=222.5
Q ss_pred HHHHHHHHhhccccCCCCCCchhHHHHHHHhhhcCCCCCCcCCccccCCCCCCcCCCCCCCchhhhhhccCCCCCCCCcc
Q 023041 10 ALFVVLSCLLGVLDASAGDADPLYRACVKQCEETGCVGQKCFPHCKFSSDGASINGPWYMQEPLYLQWKKWDCLSDCRYN 89 (288)
Q Consensus 10 ~~~~~~~~l~~~~~AS~GD~lp~f~~Cv~~C~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~pl~l~l~~WdC~sdC~Y~ 89 (288)
.+++++.++ ...+||+||++|+|++|+++||+++|.++.+. |+.+ +..|+|.|++.|||.|||+|+
T Consensus 6 v~~ll~~c~-~~~~aS~GD~~~~y~~Cv~~Ce~~~c~~~~~~-----~~~~--------~~~~l~~r~~~wdc~s~C~Y~ 71 (319)
T KOG2970|consen 6 VKFLLLKCL-VQFEASPGDRKPGYVDCVQGCEANECSNNYID-----PQTN--------MFHPLYTRLWAWDCCSDCRYQ 71 (319)
T ss_pred hHHHHHHHH-hhhccCCCCCchhHHHHHHHHhhccCCCCcCC-----cccc--------ccchhHHHHHhcCcchhcCce
Confidence 334444444 46889999999999999999999999986543 2222 234999999999999999999
Q ss_pred cchhhhhhhhhcCCCCcccccccCceecccccchHHHHHHHhHHHHHHHhHHHHHHHHHhhCCCCCCccccccchhhHHH
Q 023041 90 CMVDREIKRDALGHGPVKYHGKWPFIRVYGIQEPASVAFSVLNLAMHFHGWLSFFILLYYKLPLKQTKKAYYEFSPLWHI 169 (288)
Q Consensus 90 Cm~~~~~~r~~~g~~i~QFhGKWPF~Rv~GiQEp~SvlFSllNl~~h~~G~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~ 169 (288)
|||.++.+|.++|+|++||||||||+||+||||||||+||++||++|++|+.+ +|.+.+++++.+|+ ++|++
T Consensus 72 Cm~~t~~~~~~~~~pi~qfhGKWpFlrvlGiQEp~SviFS~lNl~~h~~g~~~------~r~~~~~~~~~r~~--~l~~I 143 (319)
T KOG2970|consen 72 CMWTTESEFIKRGGPIPQFHGKWPFLRVLGIQEPFSVIFSFLNLITHYKGLVK------FRRPKKPNRPTRYE--RLWLI 143 (319)
T ss_pred eeeeehhhHHhcCCccccccCCcchhhhhhccchHHHHHHHHHHHHHHHHHhh------eecccCCCCcchhc--cchhh
Confidence 99999999999999999999999999999999999999999999999999644 66667788888887 69999
Q ss_pred HHHHHHHHHHhHhhhhccCCCcccchhHHHHHHHHHHHHHHHHHHhccCCch-HHHHHHHHHHHHHHHHHHhhhh-----
Q 023041 170 YGFLSMNSWFWSAVFHSRDVDLTEKFDYSSAVALLGFSLILAILRSFNVRDE-AARVMVAAPLLAFVTTHILMEH----- 243 (288)
Q Consensus 170 ~~~v~~~aW~wStIFH~RD~~~TEkLDYF~A~a~vl~~l~~~~~R~f~l~~~-~~r~~~~~~~~~~~~~Hi~yL~----- 243 (288)
|+++|||||+||+|||+||+++|||||||+|+++|+||+|++++|+++++.. ..|.+++++++++|++||.||+
T Consensus 144 ~a~i~mnawiwSsvFH~rD~~lTEklDYf~A~~~vlf~ly~a~ir~~~i~~~~~~~~~ita~fla~ya~Hi~yls~~~fd 223 (319)
T KOG2970|consen 144 YAYIGMNAWIWSSVFHIRDVPLTEKLDYFSAYLTVLFGLYVALIRMLSIQSLPALRGMITAIFLAFYANHILYLSFYNFD 223 (319)
T ss_pred HHHHHHHHHHHHHhhhhcCCchHhhhhHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHhheecc
Confidence 9999999999999999999999999999999999999999999999999876 7788999999999999999996
Q ss_pred ---hhhhHHHHHHHHHHHHHhh-----ccccceeee----eEecccccc
Q 023041 244 ---ESLCCHGSGSASHLGNLGW-----YHSASFSLE----VVGGGVRRC 280 (288)
Q Consensus 244 ---NM~~nv~~G~~~~~lW~~~-----~~~~~~~~~----~~~~~~~~~ 280 (288)
||++||++|++|+++|..| ++|+-||.| ++..+|||+
T Consensus 224 YgyNm~~~v~~g~iq~vlw~~~~~~~~~~~s~~~i~~~~i~~~~~LA~s 272 (319)
T KOG2970|consen 224 YGYNMIVCVAIGVIQLVLWLVWSFKKRNLPSFWRIWPILIVIFFFLAMS 272 (319)
T ss_pred cccceeeehhhHHHHHHHHHHHHHHhhcCcchhhhhHHHHHHHHHHHHH
Confidence 9999999999999999999 789999988 334478876
No 2
>PF04080 Per1: Per1-like ; InterPro: IPR007217 A member of this family has been implemented in protein processing in the endoplasmic reticulum [].
Probab=100.00 E-value=2.9e-78 Score=560.09 Aligned_cols=201 Identities=40% Similarity=0.639 Sum_probs=178.5
Q ss_pred CchhhhhhccCCCCCCCCcccchhhhhhhhhcCCCCcccccccCceecccccchHHHHHHHhHHHHHHHhHHHHHHHHHh
Q 023041 70 QEPLYLQWKKWDCLSDCRYNCMVDREIKRDALGHGPVKYHGKWPFIRVYGIQEPASVAFSVLNLAMHFHGWLSFFILLYY 149 (288)
Q Consensus 70 ~~pl~l~l~~WdC~sdC~Y~Cm~~~~~~r~~~g~~i~QFhGKWPF~Rv~GiQEp~SvlFSllNl~~h~~G~~~~~~~~~~ 149 (288)
++|+++|+++|||+|||||+|||++|++|+++|+|++||||||||+|++||||||||+||++|+++|++|++++++
T Consensus 2 ~~Pl~l~l~~W~C~~dC~Y~Cm~~~t~~r~~~g~~i~QfhGKWPF~Rv~GiQEp~Sv~FSllNl~~h~~~~~~~~~---- 77 (267)
T PF04080_consen 2 SLPLYLRLLGWDCESDCDYQCMWIITEERIKNGEPIVQFHGKWPFKRVLGIQEPASVLFSLLNLLAHYRGLRKFRR---- 77 (267)
T ss_pred CCCcchHhcCCCCchhCcCcCcHHHHHHHHHcCCCcccccccccchhhhcCchHHHHHHHHHhHHHHHHHHHHHHH----
Confidence 5799999999999999999999999999999999999999999999999999999999999999999999998543
Q ss_pred hCCCCCCccccccchhhHHHHHHHHHHHHHhHhhhhccCCCcccchhHHHHHHHHHHHHHHHHHHhccCC-chHHHHHHH
Q 023041 150 KLPLKQTKKAYYEFSPLWHIYGFLSMNSWFWSAVFHSRDVDLTEKFDYSSAVALLGFSLILAILRSFNVR-DEAARVMVA 228 (288)
Q Consensus 150 ~~~~~~~~~~~y~~~~~~~~~~~v~~~aW~wStIFH~RD~~~TEkLDYF~A~a~vl~~l~~~~~R~f~l~-~~~~r~~~~ 228 (288)
+.+.+.+.++ .|++++++|||||+||||||+||+++|||||||+|+++|++++|++++|+|+++ ++..+.+++
T Consensus 78 ~~~~~~p~~~------~~~~~~~v~~naW~wStvFH~RD~~~TE~lDYf~A~a~vl~~l~~~~~R~f~l~~~~~~~~~~~ 151 (267)
T PF04080_consen 78 QVPRNSPMYP------YYIIYAIVSMNAWIWSTVFHTRDTPLTEKLDYFSAGATVLFGLYAAIVRIFRLYRRRRLRRIFT 151 (267)
T ss_pred hccCCCCCcC------eeehHHHHHHHHHHHHHHHHHhcccHhhHhHHhhhHHHHHHHHHHHHHHHhcccccchHHHHHH
Confidence 3333222222 267899999999999999999999999999999999999999999999999994 455677899
Q ss_pred HHHHHHHHHHHhhhh--------hhhhHHHHHHHHHHHHHhh----ccccc---------eeee----eEecccccc
Q 023041 229 APLLAFVTTHILMEH--------ESLCCHGSGSASHLGNLGW----YHSAS---------FSLE----VVGGGVRRC 280 (288)
Q Consensus 229 ~~~~~~~~~Hi~yL~--------NM~~nv~~G~~~~~lW~~~----~~~~~---------~~~~----~~~~~~~~~ 280 (288)
++|+++|++||+||+ ||++||++|++|+++|++| +++.+ ||++ |+++.+||+
T Consensus 152 ~~~~~~~~~Hv~yL~~~~fdY~YNM~~nv~~G~~~~~lw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~~~lam~ 228 (267)
T PF04080_consen 152 ALCIAFYIAHVSYLSFVRFDYGYNMKANVAVGLLQNILWLLWSFRNYRRYPSVKKSYSKRWKLWPILFVVLTILAMS 228 (267)
T ss_pred HHHHHHHHHHHHHccccccccHhHHHHHHHHHHHHHHHHHHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999995 9999999999999999999 33332 7776 777777765
No 3
>COG5237 PER1 Predicted membrane protein [Function unknown]
Probab=100.00 E-value=9.5e-69 Score=488.06 Aligned_cols=243 Identities=28% Similarity=0.378 Sum_probs=203.6
Q ss_pred HHHHHHhhccccCCCCCCchhHHHHHHHhhhc-CCCCCCcCCccccCCCCCCcCCCCCCCchhhhhhccCCCCCCCCccc
Q 023041 12 FVVLSCLLGVLDASAGDADPLYRACVKQCEET-GCVGQKCFPHCKFSSDGASINGPWYMQEPLYLQWKKWDCLSDCRYNC 90 (288)
Q Consensus 12 ~~~~~~l~~~~~AS~GD~lp~f~~Cv~~C~~~-~C~~~~~~~~~~~~~~~~~~~~~~~~~~pl~l~l~~WdC~sdC~Y~C 90 (288)
++.++.+...+.|||||++|||++|+.+|++. .|..++ +|. ...|++.++++|||.|+|+|+|
T Consensus 6 v~t~l~~~~~vt~s~gd~~~~~~~C~~~C~en~rc~~n~--------~dt--------n~~pL~~klf~wDc~s~cgy~C 69 (319)
T COG5237 6 VVTLLVHCFLVTCSPGDNLDEMKYCFGKCFENSRCNLNK--------TDT--------NMFPLVDKLFGWDCDSKCGYMC 69 (319)
T ss_pred hHHHHHHHheeecCCCCCcHHHHHHHHHHHHhcccCCCc--------CCc--------ccccHHHHHHcCccccccchHH
Confidence 33444444578899999999999999999966 884422 121 3468999999999999999999
Q ss_pred chhhhhhhhhcCCCCcccccccCceecccccchHHHHHHHhHHHHHHHhHHHHHHHHHhhCCC-CCCccccccchhhHHH
Q 023041 91 MVDREIKRDALGHGPVKYHGKWPFIRVYGIQEPASVAFSVLNLAMHFHGWLSFFILLYYKLPL-KQTKKAYYEFSPLWHI 169 (288)
Q Consensus 91 m~~~~~~r~~~g~~i~QFhGKWPF~Rv~GiQEp~SvlFSllNl~~h~~G~~~~~~~~~~~~~~-~~~~~~~y~~~~~~~~ 169 (288)
++..++-+.+.++|+.||||||||.||+||||+||++||++|+++||.|+.++. ++.+. .+.++.+| +.
T Consensus 70 ~~~~~~~~~~~n~~~~q~hGkW~F~rVlG~qEfFS~~FS~~Nfi~hy~gfh~m~----r~i~~e~~~~R~~~------l~ 139 (319)
T COG5237 70 HLLCLKFTNSGNIKIYQRHGKWGFQRVLGMQEFFSALFSFMNFITHYIGFHRML----RKILRETRLGRLYY------LQ 139 (319)
T ss_pred HHHHHHHhccCCchhhhhcCccceeeehhHHHHHHHHHHHHHHHHHHHHHHHHH----HHhcccccccceEE------ee
Confidence 999999999999999999999999999999999999999999999999998843 33333 23344454 34
Q ss_pred HHHHHHHHHHhHhhhhccCCCcccchhHHHHHHHHHHHHHHHHHHhccCCch----HHHHHHHHHHHHHHHHHHhhhh--
Q 023041 170 YGFLSMNSWFWSAVFHSRDVDLTEKFDYSSAVALLGFSLILAILRSFNVRDE----AARVMVAAPLLAFVTTHILMEH-- 243 (288)
Q Consensus 170 ~~~v~~~aW~wStIFH~RD~~~TEkLDYF~A~a~vl~~l~~~~~R~f~l~~~----~~r~~~~~~~~~~~~~Hi~yL~-- 243 (288)
++++||+||+||+|||+||+++|||+|||+|+++|++|+|.+.+|..++..+ ..+...+++++++|++||+||+
T Consensus 140 wv~igmlAwi~SsvFHird~~iTeklDYF~AgltVLfGfy~~lvrm~~~~~~p~~K~~~~~~~aifia~fa~Hi~rls~i 219 (319)
T COG5237 140 WVYIGMLAWISSSVFHIRDNTITEKLDYFLAGLTVLFGFYMALVRMILIVSPPIEKATRGPLQAIFIAFFAYHIHRLSNI 219 (319)
T ss_pred HHHHHHHHHHHHhheeeeccchhhhHHHHHhhHHHHHHHHHHHHHHHHhhcCchHHHHHhHHHHHHHHHHHHHHHHHhhc
Confidence 5799999999999999999999999999999999999999999999887543 3466677999999999999996
Q ss_pred ------hhhhHHHHHHHHHHHHHhh----cc--ccceeee----eEecccccc
Q 023041 244 ------ESLCCHGSGSASHLGNLGW----YH--SASFSLE----VVGGGVRRC 280 (288)
Q Consensus 244 ------NM~~nv~~G~~~~~lW~~~----~~--~~~~~~~----~~~~~~~~~ 280 (288)
||++|+++|+.|++||.+. ++ -+-||.| |+.-.||++
T Consensus 220 ~fdY~YNm~~n~aigv~q~iL~~~~s~~ny~~~g~~~kr~p~~~v~~~~lA~s 272 (319)
T COG5237 220 EFDYVYNMISNCAIGVTQTILSHLVSFLNYRKLGHTFKRIPLFFVFFFFLAGS 272 (319)
T ss_pred cceeeehhhhcchHHHHHHHHHHHHHHhhhHhhhhhhhhhhHHHHHHHHHhhh
Confidence 9999999999999999988 11 2336666 666666664
No 4
>PF12036 DUF3522: Protein of unknown function (DUF3522); InterPro: IPR021910 This family of proteins is functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 220 to 787 amino acids in length.
Probab=91.49 E-value=0.45 Score=42.41 Aligned_cols=91 Identities=11% Similarity=0.064 Sum_probs=53.8
Q ss_pred HHHHHHHHHhHhhhhccC-CC----cc----cchhHHHHHHHHHHHHHHHHHHhccCCchHHH--HHHHHHHHHHHHHHH
Q 023041 171 GFLSMNSWFWSAVFHSRD-VD----LT----EKFDYSSAVALLGFSLILAILRSFNVRDEAAR--VMVAAPLLAFVTTHI 239 (288)
Q Consensus 171 ~~v~~~aW~wStIFH~RD-~~----~T----EkLDYF~A~a~vl~~l~~~~~R~f~l~~~~~r--~~~~~~~~~~~~~Hi 239 (288)
+.++..+=++|+.+|+-| .+ ++ ++|||......++. ....++..-++++...+ .++.++++++...+=
T Consensus 34 a~v~~~tm~~S~~YHacd~~~~~~~lc~~~~~~L~~~~~~~s~~~-~~vtl~~~a~~~~~~~~~l~~~~~~~~ai~~~~~ 112 (186)
T PF12036_consen 34 AFVYTFTMFFSTFYHACDSGPGEIFLCIMDWHRLQNIDFIGSFLS-IWVTLCAMARLDEPLKSVLHYFGALVIAIFQQKD 112 (186)
T ss_pred HHHHHHHHHHHHhcccccCCCCceEEeechHHHHHHHHHHHHHHH-HHHHHHHhccCCHHHHHHHHHHHHHHHHHHHhhC
Confidence 678889999999999999 55 44 37888777543332 22333333334433222 234444444444332
Q ss_pred hh-hhhhhhHHHHHHHH-HHHHHhh
Q 023041 240 LM-EHESLCCHGSGSAS-HLGNLGW 262 (288)
Q Consensus 240 ~y-L~NM~~nv~~G~~~-~~lW~~~ 262 (288)
.. +.|+..-+++|++- .+-|++.
T Consensus 113 ~~~~~~~~~Pi~~~~~i~~~~w~~r 137 (186)
T PF12036_consen 113 RWSLWNTIGPILIGLLILLVSWLYR 137 (186)
T ss_pred cccchhhHHHHHHHHHHHHHHHhee
Confidence 21 22999998888855 4456655
No 5
>PF03006 HlyIII: Haemolysin-III related; InterPro: IPR004254 Members of this family are integral membrane proteins. This family includes proteins that are hemolysin-III homologs.; GO: 0016021 integral to membrane
Probab=86.40 E-value=3.1 Score=36.54 Aligned_cols=42 Identities=19% Similarity=0.332 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHhHhhhhc-------cCCCcccchhHHHHHHHHHHHHH
Q 023041 168 HIYGFLSMNSWFWSAVFHS-------RDVDLTEKFDYSSAVALLGFSLI 209 (288)
Q Consensus 168 ~~~~~v~~~aW~wStIFH~-------RD~~~TEkLDYF~A~a~vl~~l~ 209 (288)
.+|.+-.+.-.+.||++|+ +.-..-.|+||.+=...+..+..
T Consensus 45 ~~~~~~~~~~~~~St~yH~f~~~s~~~~~~~~~~lD~~gI~l~i~gs~~ 93 (222)
T PF03006_consen 45 LIYLLSAILCFLCSTLYHLFSCHSEGKVYHIFLRLDYAGIFLLIAGSYT 93 (222)
T ss_pred HHHHHHHHHHHHhHHHhhCCCcCCcHHHHHHHHhcchhhhhHhHhhhhh
Confidence 4677777778999999999 34566779999987666555533
No 6
>TIGR01065 hlyIII channel protein, hemolysin III family. This family includes proteins from pathogenic and non-pathogenic bacteria, Homo sapiens and Drosophila. In Bacillus cereus, a pathogen, it has been show to function as a channel-forming cytolysin. The human protein is expressed preferentially in mature macrophages, consistent with a role cytolytic role.
Probab=76.61 E-value=20 Score=32.10 Aligned_cols=43 Identities=23% Similarity=0.322 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHhHhhhhccCC-----CcccchhHHHHHHHHHHHHH
Q 023041 167 WHIYGFLSMNSWFWSAVFHSRDV-----DLTEKFDYSSAVALLGFSLI 209 (288)
Q Consensus 167 ~~~~~~v~~~aW~wStIFH~RD~-----~~TEkLDYF~A~a~vl~~l~ 209 (288)
..+|..-.+...+.||+||+-+. .+-+|+||.+=..+|.-+..
T Consensus 39 ~~vy~~~~~~~~~~St~yH~~~~s~~~~~~~~rlD~~gI~~lIaGsyt 86 (204)
T TIGR01065 39 FSIYGISLILLFLVSTLYHSIPKGSKAKNWLRKIDHSMIYVLIAGTYT 86 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHCCcCchhHHHHHHHccHHHHHHHHHHhhH
Confidence 35677888888999999998883 14568899887666555543
No 7
>PF10277 Frag1: Frag1/DRAM/Sfk1 family; InterPro: IPR019402 This entry includes Frag1, DRAM and Sfk1 proteins. Frag1 (FGF receptor activating protein 1) is a protein that is conserved from fungi to humans. There are four potential iso-prenylation sites throughout the peptide, CILW (x2), CIIW and CIGL. Frag1 is a membrane-spanning protein that is ubiquitously expressed in adult tissues suggesting an important cellular function []. DRAM is a family of proteins conserved from nematodes to humans with six hydrophobic transmembrane regions and an endoplasmic reticulum signal peptide. It is a lysosomal protein that induces macro-autophagy as an effector of p53-mediated death, where p53 is the tumour-suppressor gene that is frequently mutated in cancer. Expression of DRAM is stress-induced []. This region is also part of a family of small plasma membrane proteins, referred to as Sfk1, that may act together with or upstream of Stt4p to generate normal levels of the essential phospholipid PI4P, thus allowing proper localisation of Stt4p to the actin cytoskeleton [, ].
Probab=62.32 E-value=84 Score=27.09 Aligned_cols=91 Identities=25% Similarity=0.340 Sum_probs=55.5
Q ss_pred cCceecccccchHHHHHHHhHHHHHHHhHHHHHHHHHhh--CCCCCCccccccchhhHHHHHHHHHHHHHhHhhhhccCC
Q 023041 112 WPFIRVYGIQEPASVAFSVLNLAMHFHGWLSFFILLYYK--LPLKQTKKAYYEFSPLWHIYGFLSMNSWFWSAVFHSRDV 189 (288)
Q Consensus 112 WPF~Rv~GiQEp~SvlFSllNl~~h~~G~~~~~~~~~~~--~~~~~~~~~~y~~~~~~~~~~~v~~~aW~wStIFH~RD~ 189 (288)
||+.-=.|.++|-+-+|+++-.+.-.-..-. ...+++ .+..+..... ...+-.+.++++..+-+--++|+..|.
T Consensus 41 ~P~IS~~G~~~Pe~~if~~~~~~~a~~~~~~--~~~~~~~~~~~~~~~~~~--l~~~~~~~g~~~~~gl~~~a~~~~~~~ 116 (215)
T PF10277_consen 41 LPYISDIGAYPPESYIFRFGLNISAFFRLLI--VYLRYRYVRQLASKCSRW--LNILSLVFGLLSAIGLILLAIFQSTEH 116 (215)
T ss_pred cCchhHhhCcCchhHHHHHHHHHHHHHHHHH--HHHHHHHHhhhccchhhH--HHHHHHHHHHHHHHHHHHhhhhccccC
Confidence 9999999999999999998766654432211 111222 1111111111 222335677888888888899988887
Q ss_pred CcccchhHHHHHHHHHHHHH
Q 023041 190 DLTEKFDYSSAVALLGFSLI 209 (288)
Q Consensus 190 ~~TEkLDYF~A~a~vl~~l~ 209 (288)
+ ..-+.+|......+..
T Consensus 117 ~---~~H~~~a~~ff~~~~i 133 (215)
T PF10277_consen 117 P---TVHYIGAVLFFVSSFI 133 (215)
T ss_pred H---HHHHHHHHHHHHHHHH
Confidence 7 4566677544444433
No 8
>PF11416 Sed5p: Integral membrane protein Sed5p; InterPro: IPR021538 Sed5p interacts with Sly1p , a positive regulator of intracellular membrane fusion, allowing SM proteins to stay associated with the assembling fusion machinery. This allows for participation in late fusion steps []. ; PDB: 1MQS_B.
Probab=55.67 E-value=7.2 Score=25.14 Aligned_cols=20 Identities=20% Similarity=0.381 Sum_probs=15.3
Q ss_pred CCCCCchhHHHHHHHhhhcC
Q 023041 25 SAGDADPLYRACVKQCEETG 44 (288)
Q Consensus 25 S~GD~lp~f~~Cv~~C~~~~ 44 (288)
|.-||.-|||.||....+.+
T Consensus 3 ~IqdRT~EFqqcV~s~~k~n 22 (29)
T PF11416_consen 3 SIQDRTIEFQQCVSSYKKRN 22 (29)
T ss_dssp HHHB-HHHHHHHHHHHHHH-
T ss_pred chhHhhHHHHHHHHHHHHHH
Confidence 34589999999999998765
No 9
>PF05875 Ceramidase: Ceramidase; InterPro: IPR008901 This entry consists of several ceramidases. Ceramidases are enzymes involved in regulating cellular levels of ceramides, sphingoid bases, and their phosphates.; GO: 0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides, 0006672 ceramide metabolic process, 0016021 integral to membrane
Probab=47.16 E-value=2.3e+02 Score=25.99 Aligned_cols=67 Identities=15% Similarity=0.039 Sum_probs=42.3
Q ss_pred ccchHHHHHHHhHHHHHHHhHHHHHHHHHhhCCCCCCccccccchhhHHHHHHHHHHHHHhHhhhhccCCCcccchhHHH
Q 023041 120 IQEPASVAFSVLNLAMHFHGWLSFFILLYYKLPLKQTKKAYYEFSPLWHIYGFLSMNSWFWSAVFHSRDVDLTEKFDYSS 199 (288)
Q Consensus 120 iQEp~SvlFSllNl~~h~~G~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~v~~~aW~wStIFH~RD~~~TEkLDYF~ 199 (288)
|=||.=++-++.=+++-..|+.+. ++ .+ .+. .+ ...+..+..++ +-|+.||+-=...|+-+|=..
T Consensus 24 iAEf~NtlSNl~fi~~al~gl~~~----~~-~~--~~~-~~------~l~~~~l~~VG-iGS~~FHaTl~~~~ql~DelP 88 (262)
T PF05875_consen 24 IAEFWNTLSNLAFIVAALYGLYLA----RR-RG--LER-RF------ALLYLGLALVG-IGSFLFHATLSYWTQLLDELP 88 (262)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHH----hh-cc--ccc-hh------HHHHHHHHHHH-HhHHHHHhChhhhHHHhhhhh
Confidence 568998887777777777776552 12 11 111 11 12233344444 889999998889999999665
Q ss_pred HH
Q 023041 200 AV 201 (288)
Q Consensus 200 A~ 201 (288)
=.
T Consensus 89 Ml 90 (262)
T PF05875_consen 89 ML 90 (262)
T ss_pred HH
Confidence 53
No 10
>COG5102 SFT2 Membrane protein involved in ER to Golgi transport [Intracellular trafficking and secretion]
Probab=46.42 E-value=1.3e+02 Score=27.32 Aligned_cols=19 Identities=5% Similarity=-0.123 Sum_probs=17.1
Q ss_pred hhhhHHHHHHHHHHHHHhh
Q 023041 244 ESLCCHGSGSASHLGNLGW 262 (288)
Q Consensus 244 NM~~nv~~G~~~~~lW~~~ 262 (288)
|...||++|++|.+--+.+
T Consensus 155 ~t~L~i~f~~l~vvsfi~y 173 (201)
T COG5102 155 RTLLNIAFCFLQVVSFIMY 173 (201)
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 8999999999999888776
No 11
>PF10709 DUF2511: Protein of unknown function (DUF2511); InterPro: IPR019648 This entry is represented by Bacteriophage PsP3, Gp28. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=33.64 E-value=17 Score=29.01 Aligned_cols=13 Identities=31% Similarity=0.767 Sum_probs=10.3
Q ss_pred cccccccCceecc
Q 023041 106 VKYHGKWPFIRVY 118 (288)
Q Consensus 106 ~QFhGKWPF~Rv~ 118 (288)
.||-.||||.|==
T Consensus 5 ~~fG~~Wpft~ee 17 (87)
T PF10709_consen 5 FEFGDKWPFTVEE 17 (87)
T ss_pred HHccCCCCceeee
Confidence 3688899999853
No 12
>COG0649 NuoD NADH:ubiquinone oxidoreductase 49 kD subunit 7 [Energy production and conversion]
Probab=25.47 E-value=1.5e+02 Score=29.90 Aligned_cols=72 Identities=15% Similarity=0.191 Sum_probs=43.5
Q ss_pred CCCcccchhHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHH-H-HHHHHHHhhhhhhhhHHHHHHHHHHHHHhh
Q 023041 188 DVDLTEKFDYSSAVALLGFSLILAILRSFNVRDEAARVMVAAPL-L-AFVTTHILMEHESLCCHGSGSASHLGNLGW 262 (288)
Q Consensus 188 D~~~TEkLDYF~A~a~vl~~l~~~~~R~f~l~~~~~r~~~~~~~-~-~~~~~Hi~yL~NM~~nv~~G~~~~~lW~~~ 262 (288)
-.|.|++|||-+|.. -=.....++=++.++.-+.+.-.+..++ - .=...|++++. ...+-+|..+-.+|..-
T Consensus 67 ~ipy~dR~dy~~~~~-ne~ay~~AvEkLlgieVPeRAq~IRvm~~EL~RI~sHLl~lg--~~~~dlGa~T~f~yaf~ 140 (398)
T COG0649 67 NIPYTDRLDYLSAMN-NELAYVLAVEKLLGIEVPERAQYIRVMLSELNRIASHLLWLG--TFALDLGAMTPFLYAFR 140 (398)
T ss_pred cccccchhhhccccc-hhHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHH--HhhhhhccccHhhhhhH
Confidence 468899999999932 1222334667888886543321221111 1 12457887773 45567888888888765
No 13
>KOG0748 consensus Predicted membrane proteins, contain hemolysin III domain [General function prediction only; Signal transduction mechanisms]
Probab=21.28 E-value=7.2e+02 Score=23.68 Aligned_cols=35 Identities=29% Similarity=0.424 Sum_probs=23.2
Q ss_pred HhhhhccCCCccc-------chhHHHHHHHHHHHHHHHHHHhc
Q 023041 181 SAVFHSRDVDLTE-------KFDYSSAVALLGFSLILAILRSF 216 (288)
Q Consensus 181 StIFH~RD~~~TE-------kLDYF~A~a~vl~~l~~~~~R~f 216 (288)
|+++|+=-.- .| ||||.+-.+++.-+....+.-.|
T Consensus 98 S~~~H~~~~~-s~~~~~~~~~lDY~GIs~li~gS~~~~~yy~f 139 (286)
T KOG0748|consen 98 SSLYHLFSCH-SEKVSRFFLKLDYAGISLLIIGSFLPIIYYAF 139 (286)
T ss_pred HHHHHHHhcc-cHHHHHHHHHccHHhhHHHHHHHHHHHHHHhc
Confidence 9999986554 44 68999987766666554433333
No 14
>PRK15087 hemolysin; Provisional
Probab=20.04 E-value=3.2e+02 Score=24.76 Aligned_cols=41 Identities=20% Similarity=0.277 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHhHhhhhccCCC----cccchhHHHHHHHHHHHH
Q 023041 168 HIYGFLSMNSWFWSAVFHSRDVD----LTEKFDYSSAVALLGFSL 208 (288)
Q Consensus 168 ~~~~~v~~~aW~wStIFH~RD~~----~TEkLDYF~A~a~vl~~l 208 (288)
.+|+.-.+.-...||+||+=..+ +=+|+||.+=..+|.-+.
T Consensus 55 ~vy~~s~~~l~~~StlYH~~~~~~~~~~~~rlDh~~I~llIaGsy 99 (219)
T PRK15087 55 SLYGGSMILLFLASTLYHAIPHQRAKRWLKKFDHCAIYLLIAGTY 99 (219)
T ss_pred HHHHHHHHHHHHHHHHHHCCCchHHHHHHHHccHHHHHHHHHHhh
Confidence 56788888889999999986521 234699987765554443
Done!