Query 023041
Match_columns 288
No_of_seqs 126 out of 229
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 15:21:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023041.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023041hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lbw_A M2 protein; proton chan 40.9 17 0.00056 21.3 2.0 14 248-261 6-19 (23)
2 3bkd_A Transmembrane domain of 39.4 18 0.0006 21.7 2.0 13 249-261 10-22 (26)
3 2ljb_A M2 protein, BM2 protein 25.1 40 0.0014 21.6 2.0 15 248-262 13-27 (35)
4 2kih_A Matrix protein 2; S31N, 21.9 62 0.0021 21.5 2.5 15 248-262 13-27 (43)
5 2l2r_A Antimicrobial peptide e 11.2 1.3E+02 0.0045 19.3 1.9 16 28-43 17-32 (37)
6 1mqs_B SED5P, integral membran 10.4 98 0.0034 21.3 1.2 21 24-44 6-26 (50)
7 2k8j_X P7TM2; P7 polypeptide, 8.8 35 0.0012 21.1 -1.4 10 106-115 8-17 (29)
8 2vzy_A RV0802C; transferase, G 8.2 72 0.0025 25.5 -0.3 33 91-123 183-215 (218)
9 2plx_B Peptide inhibitor; heli 8.1 1.3E+02 0.0046 17.6 0.9 11 32-42 16-26 (26)
10 2cmy_B Beta trypsin, veronica 7.2 1.4E+02 0.0049 18.5 0.8 13 31-43 20-32 (34)
No 1
>3lbw_A M2 protein; proton channel, M2TM, HOST CEL membrane, hydrogen ION transport, ionic channel, transmembr virion, transport protein; HET: XYL; 1.65A {Influenza a virus}
Probab=40.94 E-value=17 Score=21.29 Aligned_cols=14 Identities=0% Similarity=-0.410 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHh
Q 023041 248 CHGSGSASHLGNLG 261 (288)
Q Consensus 248 nv~~G~~~~~lW~~ 261 (288)
.-++|+++.++|++
T Consensus 6 a~iigIlHLiLwIl 19 (23)
T 3lbw_A 6 ASIIAILHLILWIL 19 (26)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34689999999986
No 2
>3bkd_A Transmembrane domain of matrix protein M2; proton channel, M2TM, influenza A virus M2 protein, viral PR membrane protein; HET: MSE BOG; 2.05A {Synthetic} SCOP: j.35.1.1 PDB: 1mp6_A 1nyj_A 2kqt_A* 2kad_A* 3c9j_A*
Probab=39.35 E-value=18 Score=21.71 Aligned_cols=13 Identities=8% Similarity=-0.289 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHh
Q 023041 249 HGSGSASHLGNLG 261 (288)
Q Consensus 249 v~~G~~~~~lW~~ 261 (288)
-++|+++.++|++
T Consensus 10 ~iiGilHLiLwIl 22 (26)
T 3bkd_A 10 SIMGILHLILWIL 22 (26)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4689999999986
No 3
>2ljb_A M2 protein, BM2 protein chimera; M2 channel, transport protein; NMR {Influenza a virus} PDB: 2ljc_A*
Probab=25.15 E-value=40 Score=21.59 Aligned_cols=15 Identities=7% Similarity=-0.281 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHhh
Q 023041 248 CHGSGSASHLGNLGW 262 (288)
Q Consensus 248 nv~~G~~~~~lW~~~ 262 (288)
.-++|+++.++|++=
T Consensus 13 A~IigiLHlilWild 27 (35)
T 2ljb_A 13 ASIIGILHFIAWTIG 27 (35)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhh
Confidence 346899999999864
No 4
>2kih_A Matrix protein 2; S31N, proton channel, cell membrane, disulfide bond, hydrogen ION transport, ION transport, ionic channel, membrane; NMR {Influenza a virus} PDB: 2rlf_A* 2l0j_A 2kwx_A
Probab=21.91 E-value=62 Score=21.45 Aligned_cols=15 Identities=7% Similarity=-0.332 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHhh
Q 023041 248 CHGSGSASHLGNLGW 262 (288)
Q Consensus 248 nv~~G~~~~~lW~~~ 262 (288)
.-++|+++.+||++=
T Consensus 13 a~iiGIlHLiLwild 27 (43)
T 2kih_A 13 ANIIGILHLILWILD 27 (43)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 346899999999975
No 5
>2l2r_A Antimicrobial peptide ecamp1; disulfide-stabilized helical hairpin, antifungal peptide, antimicrobial protein; NMR {Echinochloa crus-galli}
Probab=11.25 E-value=1.3e+02 Score=19.26 Aligned_cols=16 Identities=31% Similarity=0.563 Sum_probs=13.1
Q ss_pred CCchhHHHHHHHhhhc
Q 023041 28 DADPLYRACVKQCEET 43 (288)
Q Consensus 28 D~lp~f~~Cv~~C~~~ 43 (288)
|.-.+-|+|+.+|+..
T Consensus 17 dePWr~QECm~qCrrR 32 (37)
T 2l2r_A 17 DEPWRVQECVSQCRRR 32 (37)
T ss_dssp SCGGGHHHHHHHHHSC
T ss_pred CCccHHHHHHHHHHHh
Confidence 6667889999999854
No 6
>1mqs_B SED5P, integral membrane protein SED5; SM-protein, snare, syntaxin, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae}
Probab=10.40 E-value=98 Score=21.34 Aligned_cols=21 Identities=10% Similarity=0.162 Sum_probs=17.6
Q ss_pred CCCCCCchhHHHHHHHhhhcC
Q 023041 24 ASAGDADPLYRACVKQCEETG 44 (288)
Q Consensus 24 AS~GD~lp~f~~Cv~~C~~~~ 44 (288)
.|.=||..||+.|++.=++..
T Consensus 6 ~SiqDRT~EF~siv~~lqkr~ 26 (50)
T 1mqs_B 6 MNIKDRTSEFQQSVLSYKKRN 26 (50)
T ss_dssp HHHHBCHHHHHHHHHHHHHHC
T ss_pred ccccccCHHHHHHHHHHHhcc
Confidence 456799999999999988654
No 7
>2k8j_X P7TM2; P7 polypeptide, HCV, ION chaneling, transmembrane, viral Pro; NMR {Synthetic}
Probab=8.81 E-value=35 Score=21.12 Aligned_cols=10 Identities=30% Similarity=0.926 Sum_probs=6.7
Q ss_pred cccccccCce
Q 023041 106 VKYHGKWPFI 115 (288)
Q Consensus 106 ~QFhGKWPF~ 115 (288)
.-++|+||+.
T Consensus 8 Y~~~g~Wpll 17 (29)
T 2k8j_X 8 YALYGVWPLL 17 (29)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHhHHHHH
Confidence 3467888863
No 8
>2vzy_A RV0802C; transferase, GCN5-related N-acetyltransferase, succinyltransferase; HET: FLC; 2.00A {Mycobacterium tuberculosis} PDB: 2vzz_A*
Probab=8.19 E-value=72 Score=25.50 Aligned_cols=33 Identities=15% Similarity=0.035 Sum_probs=22.2
Q ss_pred chhhhhhhhhcCCCCcccccccCceecccccch
Q 023041 91 MVDREIKRDALGHGPVKYHGKWPFIRVYGIQEP 123 (288)
Q Consensus 91 m~~~~~~r~~~g~~i~QFhGKWPF~Rv~GiQEp 123 (288)
+..+.++..+....++|..|-.|+.+++|+-||
T Consensus 183 ~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 215 (218)
T 2vzy_A 183 FRLTRDDWQRHRTVEVRVDGFDRCRPLFGPLEP 215 (218)
T ss_dssp EEEEHHHHHHHCCCCCEEESCGGGHHHHCC---
T ss_pred EEEcHHHhcccCCCCceEeChhHHHHHhCCCCC
Confidence 444444444445568899999999999999887
No 9
>2plx_B Peptide inhibitor; helix-turn-helix, hydrolase; HET: FLC; 1.56A {Bos taurus}
Probab=8.05 E-value=1.3e+02 Score=17.61 Aligned_cols=11 Identities=45% Similarity=1.177 Sum_probs=8.5
Q ss_pred hHHHHHHHhhh
Q 023041 32 LYRACVKQCEE 42 (288)
Q Consensus 32 ~f~~Cv~~C~~ 42 (288)
.-+.|++.||+
T Consensus 16 llrrcldncek 26 (26)
T 2plx_B 16 LLRRCLDNCEK 26 (26)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHhcccC
Confidence 45789999973
No 10
>2cmy_B Beta trypsin, veronica hederifolia trypsin inhibitor; acyl-enzyme intermediate, serine protease inhibitor, zymogen protease, digestion; 2.25A {Veronica hederifolia} SCOP: g.2.4.1
Probab=7.15 E-value=1.4e+02 Score=18.49 Aligned_cols=13 Identities=38% Similarity=0.981 Sum_probs=7.9
Q ss_pred hhHHHHHHHhhhc
Q 023041 31 PLYRACVKQCEET 43 (288)
Q Consensus 31 p~f~~Cv~~C~~~ 43 (288)
..-+.|++.|+++
T Consensus 20 ellrrcldnceke 32 (34)
T 2cmy_B 20 ELLRRCLDNCEKE 32 (34)
T ss_dssp HHHHHHHHHC---
T ss_pred HHHHHHHHhhhhc
Confidence 3468899999864
Done!