Query 023041
Match_columns 288
No_of_seqs 126 out of 229
Neff 5.2
Searched_HMMs 13730
Date Mon Mar 25 15:21:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023041.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/023041hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1nyra1 c.51.1.1 (A:533-645) T 27.0 6.1 0.00044 28.7 -0.1 8 107-114 2-9 (113)
2 d1wmta_ g.3.7.2 (A:) Istx {Sco 25.7 14 0.00099 22.5 1.4 17 34-50 11-28 (41)
3 d1dx5i1 g.3.11.1 (I:345-387) T 13.0 26 0.0019 21.9 0.5 10 84-93 10-19 (43)
4 d1x5wa1 g.37.1.1 (A:8-35) Zinc 10.0 39 0.0028 19.0 0.6 10 84-93 6-15 (28)
5 d1n8ma_ g.3.7.2 (A:) PI4, pota 9.5 53 0.0039 19.7 1.1 17 34-50 10-27 (38)
6 d1uhaa1 g.3.1.1 (A:1-42) Lecti 9.2 44 0.0032 20.6 0.7 8 81-88 35-42 (42)
7 d1ggla_ b.60.1.2 (A:) Cellular 8.2 38 0.0028 25.0 0.1 19 105-123 1-19 (134)
8 d2fsja2 c.55.1.12 (A:1-164) Hy 7.6 55 0.004 24.2 0.8 28 105-132 131-161 (164)
9 d3dtub2 f.17.2.1 (B:30-129) Ba 6.7 3.7E+02 0.027 18.1 6.8 11 118-128 12-22 (100)
10 d1ulka2 g.3.1.1 (A:43-83) Lect 6.2 78 0.0057 19.3 0.8 10 79-88 32-41 (41)
No 1
>d1nyra1 c.51.1.1 (A:533-645) Threonyl-tRNA synthetase (ThrRS), C-terminal domain {Staphylococcus aureus [TaxId: 1280]}
Probab=27.02 E-value=6.1 Score=28.69 Aligned_cols=8 Identities=25% Similarity=0.630 Sum_probs=6.9
Q ss_pred ccccccCc
Q 023041 107 KYHGKWPF 114 (288)
Q Consensus 107 QFhGKWPF 114 (288)
.|.||||+
T Consensus 2 ~~~G~~P~ 9 (113)
T d1nyra1 2 ETKGAFPT 9 (113)
T ss_dssp HHTTCCCT
T ss_pred CCCCCCCc
Confidence 58999996
No 2
>d1wmta_ g.3.7.2 (A:) Istx {Scorpion (Opisthacanthus madagascariensis) [TaxId: 167108]}
Probab=25.66 E-value=14 Score=22.49 Aligned_cols=17 Identities=35% Similarity=1.034 Sum_probs=13.8
Q ss_pred HHHHHHhhhc-CCCCCCc
Q 023041 34 RACVKQCEET-GCVGQKC 50 (288)
Q Consensus 34 ~~Cv~~C~~~-~C~~~~~ 50 (288)
.||-+.||++ +|...++
T Consensus 11 sdcyepcekkyncarakc 28 (41)
T d1wmta_ 11 SDCYEPCEKKYNCARAKC 28 (41)
T ss_dssp HHHHHHHHHTTSCCCCEE
T ss_pred ccccchHHHhhchHHHHH
Confidence 5899999977 9987654
No 3
>d1dx5i1 g.3.11.1 (I:345-387) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.99 E-value=26 Score=21.91 Aligned_cols=10 Identities=30% Similarity=0.946 Sum_probs=8.0
Q ss_pred CCCCcccchh
Q 023041 84 SDCRYNCMVD 93 (288)
Q Consensus 84 sdC~Y~Cm~~ 93 (288)
++|.|||+-.
T Consensus 10 ~~CE~qCqP~ 19 (43)
T d1dx5i1 10 ANCEYQCQPL 19 (43)
T ss_dssp CCCSSEEEEC
T ss_pred CCcceeeeeC
Confidence 6899999754
No 4
>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.95 E-value=39 Score=19.04 Aligned_cols=10 Identities=40% Similarity=1.149 Sum_probs=7.6
Q ss_pred CCCCcccchh
Q 023041 84 SDCRYNCMVD 93 (288)
Q Consensus 84 sdC~Y~Cm~~ 93 (288)
+||.|.|.-.
T Consensus 6 ~ecsyscssk 15 (28)
T d1x5wa1 6 SECSYSCSSK 15 (28)
T ss_dssp SSSSCEESSH
T ss_pred cccccccCcH
Confidence 4899999643
No 5
>d1n8ma_ g.3.7.2 (A:) PI4, potassium channel blocking toxin 4 {Scorpion (Pandinus imperator) [TaxId: 55084]}
Probab=9.46 E-value=53 Score=19.74 Aligned_cols=17 Identities=41% Similarity=1.228 Sum_probs=13.7
Q ss_pred HHHHHHhhhc-CCCCCCc
Q 023041 34 RACVKQCEET-GCVGQKC 50 (288)
Q Consensus 34 ~~Cv~~C~~~-~C~~~~~ 50 (288)
+||-..|+++ +|.++++
T Consensus 10 kdCy~PC~k~TGc~nakC 27 (38)
T d1n8ma_ 10 RDCYRPCQKRTGCPNAKC 27 (38)
T ss_dssp HHHHHHHHHHHSSCCEEE
T ss_pred chhcchHHHhcCCCchHH
Confidence 6899999955 9998764
No 6
>d1uhaa1 g.3.1.1 (A:1-42) Lectin-D {American pokeweed (Phytolacca americana) [TaxId: 3527]}
Probab=9.24 E-value=44 Score=20.62 Aligned_cols=8 Identities=50% Similarity=1.335 Sum_probs=6.6
Q ss_pred CCCCCCCc
Q 023041 81 DCLSDCRY 88 (288)
Q Consensus 81 dC~sdC~Y 88 (288)
.|.|+|+|
T Consensus 35 GCqsnC~y 42 (42)
T d1uhaa1 35 GCQSQCDY 42 (42)
T ss_dssp TCCBCTTT
T ss_pred cccccCCc
Confidence 58888887
No 7
>d1ggla_ b.60.1.2 (A:) Cellular retinol-binding protein III {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.21 E-value=38 Score=25.00 Aligned_cols=19 Identities=16% Similarity=0.431 Sum_probs=13.7
Q ss_pred CcccccccCceecccccch
Q 023041 105 PVKYHGKWPFIRVYGIQEP 123 (288)
Q Consensus 105 i~QFhGKWPF~Rv~GiQEp 123 (288)
|+||-|||-+.+-=.+-|+
T Consensus 1 p~~f~Gtwkl~~sENfd~f 19 (134)
T d1ggla_ 1 PPNLTGYYRFVSQKNMEDY 19 (134)
T ss_dssp CCSCCEEEEEEEEECHHHH
T ss_pred CCCcCEEEEEEeccCHHHH
Confidence 6899999999985443333
No 8
>d2fsja2 c.55.1.12 (A:1-164) Hypothetical protein Ta0583 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Probab=7.58 E-value=55 Score=24.20 Aligned_cols=28 Identities=18% Similarity=0.140 Sum_probs=22.6
Q ss_pred Cccccccc---CceecccccchHHHHHHHhH
Q 023041 105 PVKYHGKW---PFIRVYGIQEPASVAFSVLN 132 (288)
Q Consensus 105 i~QFhGKW---PF~Rv~GiQEp~SvlFSllN 132 (288)
..++.|+. -+.++.-+.||++++++++|
T Consensus 131 ~~~~~g~~~~i~I~~v~V~pQg~ga~~~~l~ 161 (164)
T d2fsja2 131 VTGPEGEVRQFNITRLIMRPQGVGAALYLLN 161 (164)
T ss_dssp EECGGGCEEEEEEEEEEEEETTHHHHHHHHH
T ss_pred EEeeCCeEEEEEEeEEEEecCCHHHHHHHHH
Confidence 44566774 56788999999999999887
No 9
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=6.66 E-value=3.7e+02 Score=18.15 Aligned_cols=11 Identities=36% Similarity=0.271 Sum_probs=8.9
Q ss_pred ccccchHHHHH
Q 023041 118 YGIQEPASVAF 128 (288)
Q Consensus 118 ~GiQEp~SvlF 128 (288)
+|+|||+|-..
T Consensus 12 l~fqd~as~~a 22 (100)
T d3dtub2 12 TGFQPSASPVA 22 (100)
T ss_dssp CSCCCCCSHHH
T ss_pred cCCCCCCCHHH
Confidence 79999998754
No 10
>d1ulka2 g.3.1.1 (A:43-83) Lectin-C {American pokeweed (Phytolacca americana) [TaxId: 3527]}
Probab=6.22 E-value=78 Score=19.34 Aligned_cols=10 Identities=40% Similarity=0.893 Sum_probs=8.1
Q ss_pred cCCCCCCCCc
Q 023041 79 KWDCLSDCRY 88 (288)
Q Consensus 79 ~WdC~sdC~Y 88 (288)
+-.|.|+|+|
T Consensus 32 g~gCqs~C~y 41 (41)
T d1ulka2 32 GEGCQSQCSY 41 (41)
T ss_dssp STTCCBCTTT
T ss_pred ccccccCCCC
Confidence 5678899988
Done!