Query 023042
Match_columns 288
No_of_seqs 224 out of 954
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 08:01:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023042.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023042hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00744 RINGv The RING-vari 99.7 1.6E-17 3.5E-22 118.8 3.4 49 201-249 1-49 (49)
2 PF12906 RINGv: RING-variant d 99.6 9.9E-17 2.2E-21 113.8 1.8 47 202-248 1-47 (47)
3 PHA02825 LAP/PHD finger-like p 99.6 3E-16 6.4E-21 136.9 4.5 59 194-255 3-61 (162)
4 PHA02862 5L protein; Provision 99.6 2.6E-16 5.5E-21 135.8 3.7 54 199-255 2-55 (156)
5 COG5183 SSM4 Protein involved 99.5 1.7E-14 3.8E-19 149.5 3.8 62 197-258 10-71 (1175)
6 KOG1609 Protein involved in mR 99.4 4.8E-14 1E-18 128.4 3.7 89 189-277 68-158 (323)
7 KOG3053 Uncharacterized conser 99.4 2.8E-13 6E-18 126.2 2.9 70 193-262 14-91 (293)
8 KOG4628 Predicted E3 ubiquitin 98.6 1.9E-08 4E-13 97.5 3.9 49 200-254 230-279 (348)
9 PF13639 zf-RING_2: Ring finge 98.4 8.2E-08 1.8E-12 65.9 1.6 43 200-249 1-44 (44)
10 COG5540 RING-finger-containing 98.0 4.3E-06 9.4E-11 80.4 4.3 52 196-253 320-372 (374)
11 PHA02929 N1R/p28-like protein; 98.0 3.6E-06 7.9E-11 78.0 3.1 52 198-256 173-230 (238)
12 PF12678 zf-rbx1: RING-H2 zinc 97.9 1.2E-05 2.6E-10 61.6 3.6 43 200-249 20-73 (73)
13 COG5243 HRD1 HRD ubiquitin lig 97.8 2E-05 4.4E-10 77.6 4.3 56 191-253 279-345 (491)
14 cd00162 RING RING-finger (Real 97.7 3.2E-05 6.9E-10 50.5 3.2 45 201-252 1-45 (45)
15 PF13920 zf-C3HC4_3: Zinc fing 97.7 3.7E-05 7.9E-10 54.1 2.9 48 198-254 1-49 (50)
16 PF12861 zf-Apc11: Anaphase-pr 97.6 6.1E-05 1.3E-09 60.3 3.8 52 199-254 21-83 (85)
17 PLN03208 E3 ubiquitin-protein 97.6 6.3E-05 1.4E-09 68.1 4.1 51 197-254 16-80 (193)
18 smart00184 RING Ring finger. E 97.4 0.00012 2.7E-09 46.0 2.6 39 202-248 1-39 (39)
19 PF11793 FANCL_C: FANCL C-term 97.3 7.1E-05 1.5E-09 57.1 0.3 52 199-253 2-66 (70)
20 COG5219 Uncharacterized conser 97.3 7.3E-05 1.6E-09 80.5 0.4 58 195-255 1465-1525(1525)
21 KOG0823 Predicted E3 ubiquitin 97.2 0.00041 8.9E-09 64.4 4.9 53 195-254 43-96 (230)
22 KOG0802 E3 ubiquitin ligase [P 97.2 0.00019 4.2E-09 72.7 2.8 51 195-252 287-340 (543)
23 PF00097 zf-C3HC4: Zinc finger 97.2 0.00037 7.9E-09 46.6 2.9 41 202-248 1-41 (41)
24 PHA02926 zinc finger-like prot 97.0 0.0005 1.1E-08 63.9 3.2 55 197-256 168-233 (242)
25 KOG1493 Anaphase-promoting com 96.9 0.0003 6.4E-09 55.9 0.8 51 201-255 22-83 (84)
26 KOG0828 Predicted E3 ubiquitin 96.8 0.0007 1.5E-08 69.0 2.9 57 191-253 563-634 (636)
27 PF13923 zf-C3HC4_2: Zinc fing 96.8 0.0012 2.6E-08 44.3 2.7 38 202-248 1-39 (39)
28 smart00504 Ubox Modified RING 96.6 0.003 6.5E-08 45.3 3.8 45 200-253 2-46 (63)
29 KOG4265 Predicted E3 ubiquitin 96.5 0.0032 7E-08 61.6 5.0 53 194-254 285-337 (349)
30 KOG0827 Predicted E3 ubiquitin 96.4 0.0018 4E-08 64.4 2.6 46 199-249 4-52 (465)
31 KOG0317 Predicted E3 ubiquitin 96.3 0.0041 9E-08 59.5 4.0 62 191-261 231-292 (293)
32 PF14634 zf-RING_5: zinc-RING 96.1 0.0049 1.1E-07 42.5 2.6 43 201-250 1-44 (44)
33 TIGR00599 rad18 DNA repair pro 96.1 0.0037 8E-08 62.1 2.6 50 196-254 23-72 (397)
34 KOG0804 Cytoplasmic Zn-finger 96.0 0.0024 5.2E-08 64.3 0.7 48 197-253 173-222 (493)
35 KOG4445 Uncharacterized conser 95.4 0.0048 1E-07 59.8 0.6 52 198-254 114-187 (368)
36 KOG0320 Predicted E3 ubiquitin 95.3 0.046 9.9E-07 49.5 6.3 57 189-252 121-177 (187)
37 KOG1645 RING-finger-containing 94.9 0.0093 2E-07 59.7 0.9 65 197-266 2-72 (463)
38 COG5194 APC11 Component of SCF 94.8 0.026 5.6E-07 45.4 3.0 32 217-255 52-83 (88)
39 PF14570 zf-RING_4: RING/Ubox 94.8 0.017 3.7E-07 41.9 1.7 46 202-253 1-48 (48)
40 PF15227 zf-C3HC4_4: zinc fing 94.2 0.039 8.5E-07 38.2 2.5 40 202-248 1-42 (42)
41 PF04564 U-box: U-box domain; 92.7 0.094 2E-06 39.8 2.5 49 198-254 3-51 (73)
42 KOG1734 Predicted RING-contain 92.6 0.026 5.7E-07 54.2 -0.7 52 197-253 222-281 (328)
43 PF13445 zf-RING_UBOX: RING-ty 92.4 0.11 2.3E-06 36.6 2.3 40 202-246 1-43 (43)
44 KOG1785 Tyrosine kinase negati 92.4 0.036 7.8E-07 55.8 -0.2 57 193-256 363-419 (563)
45 KOG2177 Predicted E3 ubiquitin 92.0 0.063 1.4E-06 45.8 0.9 48 194-250 8-55 (386)
46 PF05883 Baculo_RING: Baculovi 91.9 0.06 1.3E-06 46.6 0.6 42 198-239 25-68 (134)
47 KOG2930 SCF ubiquitin ligase, 91.4 0.11 2.4E-06 43.6 1.7 32 217-255 79-110 (114)
48 KOG0801 Predicted E3 ubiquitin 91.3 0.11 2.4E-06 46.9 1.7 34 192-230 170-204 (205)
49 PF07800 DUF1644: Protein of u 91.3 0.26 5.5E-06 44.0 4.0 55 198-256 1-94 (162)
50 KOG0825 PHD Zn-finger protein 90.9 0.12 2.5E-06 55.8 1.6 53 198-257 122-175 (1134)
51 TIGR00570 cdk7 CDK-activating 89.4 0.34 7.4E-06 47.0 3.4 50 199-254 3-55 (309)
52 KOG2164 Predicted E3 ubiquitin 89.0 0.32 7E-06 50.0 3.1 57 199-262 186-248 (513)
53 KOG1952 Transcription factor N 88.9 0.34 7.3E-06 52.6 3.2 60 196-259 188-253 (950)
54 COG5432 RAD18 RING-finger-cont 88.9 0.19 4E-06 49.1 1.2 51 197-256 23-73 (391)
55 COG5574 PEX10 RING-finger-cont 88.7 0.38 8.2E-06 45.9 3.1 58 196-261 212-270 (271)
56 PF10367 Vps39_2: Vacuolar sor 87.8 0.23 5E-06 38.7 0.9 34 197-235 76-109 (109)
57 PLN02189 cellulose synthase 87.0 0.43 9.3E-06 52.8 2.7 51 198-253 33-87 (1040)
58 COG5236 Uncharacterized conser 86.8 1 2.3E-05 45.0 4.9 84 192-282 54-140 (493)
59 PF14569 zf-UDP: Zinc-binding 86.5 0.69 1.5E-05 37.0 2.9 53 197-255 7-64 (80)
60 KOG1039 Predicted E3 ubiquitin 85.7 0.59 1.3E-05 46.0 2.6 60 197-261 159-229 (344)
61 KOG0287 Postreplication repair 85.2 0.31 6.7E-06 48.4 0.4 47 198-253 22-68 (442)
62 COG5175 MOT2 Transcriptional r 85.0 0.72 1.6E-05 46.0 2.9 55 197-257 12-68 (480)
63 PLN02195 cellulose synthase A 84.7 0.95 2.1E-05 49.9 3.8 51 197-253 4-59 (977)
64 PLN02436 cellulose synthase A 84.3 0.69 1.5E-05 51.4 2.6 51 198-253 35-89 (1094)
65 PLN02638 cellulose synthase A 83.2 1.2 2.5E-05 49.7 3.8 50 198-253 16-70 (1079)
66 KOG1428 Inhibitor of type V ad 83.2 1.1 2.3E-05 51.9 3.5 57 195-256 3482-3547(3738)
67 KOG3970 Predicted E3 ubiquitin 83.2 1.1 2.4E-05 42.5 3.1 51 197-252 48-104 (299)
68 PLN02400 cellulose synthase 81.3 1.1 2.3E-05 50.0 2.6 51 198-254 35-90 (1085)
69 KOG0956 PHD finger protein AF1 77.0 1.1 2.4E-05 48.0 1.2 59 197-255 115-184 (900)
70 KOG1941 Acetylcholine receptor 76.2 0.75 1.6E-05 46.5 -0.3 49 197-250 363-413 (518)
71 KOG0802 E3 ubiquitin ligase [P 76.1 1.6 3.4E-05 44.8 1.9 54 188-254 468-521 (543)
72 KOG1973 Chromatin remodeling p 75.8 1.2 2.6E-05 42.1 0.9 53 197-253 217-270 (274)
73 PF08746 zf-RING-like: RING-li 74.7 2 4.3E-05 30.0 1.6 22 227-248 22-43 (43)
74 COG5034 TNG2 Chromatin remodel 74.5 1.8 3.8E-05 41.4 1.7 30 220-251 241-270 (271)
75 PLN02915 cellulose synthase A 73.4 2.6 5.7E-05 46.9 2.8 51 197-253 13-68 (1044)
76 KOG1002 Nucleotide excision re 70.7 1.9 4.2E-05 45.2 1.1 54 193-253 530-586 (791)
77 PF10272 Tmpp129: Putative tra 69.2 4.1 8.9E-05 40.4 2.9 36 217-255 307-353 (358)
78 PF05290 Baculo_IE-1: Baculovi 68.2 3.5 7.6E-05 36.1 2.0 56 198-255 79-134 (140)
79 PF04641 Rtf2: Rtf2 RING-finge 67.4 6.1 0.00013 36.8 3.5 54 195-256 109-164 (260)
80 KOG3268 Predicted E3 ubiquitin 63.5 5.9 0.00013 36.6 2.6 57 197-253 163-228 (234)
81 KOG0955 PHD finger protein BR1 61.6 2.9 6.3E-05 46.6 0.3 55 195-251 215-269 (1051)
82 KOG4172 Predicted E3 ubiquitin 61.5 3.9 8.4E-05 31.1 0.9 49 200-255 8-56 (62)
83 KOG0824 Predicted E3 ubiquitin 58.3 5.7 0.00012 38.9 1.7 48 198-253 6-53 (324)
84 KOG4323 Polycomb-like PHD Zn-f 58.1 4.9 0.00011 41.3 1.2 56 199-257 168-230 (464)
85 KOG1940 Zn-finger protein [Gen 55.9 5.7 0.00012 38.2 1.2 42 202-250 161-204 (276)
86 KOG4443 Putative transcription 51.8 6.7 0.00014 41.9 1.0 32 216-249 35-75 (694)
87 KOG4692 Predicted E3 ubiquitin 51.2 8.6 0.00019 38.8 1.6 49 197-254 420-468 (489)
88 KOG2660 Locus-specific chromos 50.1 6.6 0.00014 38.7 0.6 52 197-256 13-64 (331)
89 KOG0825 PHD Zn-finger protein 47.0 8.1 0.00018 42.4 0.8 50 195-249 211-264 (1134)
90 KOG3005 GIY-YIG type nuclease 47.0 9 0.0002 36.9 1.0 55 199-253 182-243 (276)
91 PF06937 EURL: EURL protein; 47.0 21 0.00045 34.6 3.4 57 177-240 11-69 (285)
92 smart00249 PHD PHD zinc finger 45.7 7.4 0.00016 25.2 0.1 30 201-234 1-30 (47)
93 PF01440 Gemini_AL2: Geminivir 43.4 4.6 9.9E-05 35.1 -1.4 34 214-250 32-65 (134)
94 KOG4159 Predicted E3 ubiquitin 43.1 14 0.00031 37.1 1.8 49 197-254 82-130 (398)
95 KOG4275 Predicted E3 ubiquitin 41.9 1.9 4.2E-05 42.1 -4.3 43 199-253 300-342 (350)
96 PF14447 Prok-RING_4: Prokaryo 39.5 21 0.00045 26.8 1.7 46 198-254 6-51 (55)
97 KOG3899 Uncharacterized conser 39.4 17 0.00037 35.9 1.6 37 219-258 323-370 (381)
98 PF11789 zf-Nse: Zinc-finger o 38.5 19 0.00041 26.6 1.4 43 198-247 10-53 (57)
99 KOG1813 Predicted E3 ubiquitin 36.3 19 0.0004 35.4 1.3 48 200-256 242-289 (313)
100 KOG3039 Uncharacterized conser 35.7 34 0.00074 33.1 2.9 66 198-270 220-288 (303)
101 KOG1100 Predicted E3 ubiquitin 35.4 25 0.00054 32.2 2.0 41 200-253 159-200 (207)
102 KOG0826 Predicted E3 ubiquitin 35.0 30 0.00065 34.5 2.5 58 187-252 288-345 (357)
103 KOG2114 Vacuolar assembly/sort 33.8 19 0.0004 39.8 1.0 44 200-255 841-885 (933)
104 PF00628 PHD: PHD-finger; Int 33.7 13 0.00029 25.5 -0.1 44 201-249 1-49 (51)
105 KOG0978 E3 ubiquitin ligase in 33.3 17 0.00037 39.2 0.6 48 198-253 642-689 (698)
106 COG4847 Uncharacterized protei 33.2 38 0.00082 28.3 2.5 36 199-240 6-42 (103)
107 KOG0956 PHD finger protein AF1 31.6 30 0.00064 37.7 2.0 56 200-256 6-76 (900)
108 COG5152 Uncharacterized conser 31.3 25 0.00054 33.1 1.2 46 200-254 197-242 (259)
109 KOG0309 Conserved WD40 repeat- 31.1 36 0.00079 37.5 2.6 40 200-246 1029-1068(1081)
110 PF03854 zf-P11: P-11 zinc fin 29.6 27 0.00059 25.8 0.9 26 226-253 21-46 (50)
111 PF10571 UPF0547: Uncharacteri 28.4 28 0.00062 22.1 0.8 12 242-253 14-25 (26)
112 KOG0311 Predicted E3 ubiquitin 28.3 8.8 0.00019 38.4 -2.3 50 197-253 41-90 (381)
113 PF14446 Prok-RING_1: Prokaryo 28.2 58 0.0013 24.3 2.5 45 197-252 3-51 (54)
114 KOG2034 Vacuolar sorting prote 27.9 25 0.00054 38.9 0.8 38 196-238 814-851 (911)
115 KOG2879 Predicted E3 ubiquitin 27.8 71 0.0015 31.2 3.7 53 194-253 234-287 (298)
116 PF04423 Rad50_zn_hook: Rad50 26.4 47 0.001 23.7 1.7 23 231-253 7-31 (54)
117 KOG3352 Cytochrome c oxidase, 26.3 19 0.00041 32.1 -0.4 40 216-259 111-150 (153)
118 PF09943 DUF2175: Uncharacteri 24.7 66 0.0014 26.9 2.5 35 201-240 4-38 (101)
119 PF13894 zf-C2H2_4: C2H2-type 24.4 34 0.00074 19.1 0.6 12 244-255 2-13 (24)
120 KOG2068 MOT2 transcription fac 23.8 56 0.0012 32.4 2.3 52 198-254 248-299 (327)
121 KOG1814 Predicted E3 ubiquitin 23.2 48 0.001 34.0 1.7 62 196-262 181-249 (445)
122 KOG4217 Nuclear receptors of t 20.3 1.8E+02 0.0038 30.8 5.0 13 196-208 266-278 (605)
No 1
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=99.68 E-value=1.6e-17 Score=118.78 Aligned_cols=49 Identities=51% Similarity=1.187 Sum_probs=45.7
Q ss_pred eeeEecccCCCCCeeeccCccCCCcceecHHHHHHHHHhcCCCcccCCC
Q 023042 201 VCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCG 249 (288)
Q Consensus 201 ~CRICle~~e~g~~Li~PC~CkGsl~~vH~~CL~kWL~~kg~~~CEICK 249 (288)
+||||++.++++++|++||.|+|+++|||+.||.+|+..+++.+||||+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 5999999666778999999999999999999999999999889999996
No 2
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=99.62 E-value=9.9e-17 Score=113.81 Aligned_cols=47 Identities=47% Similarity=1.128 Sum_probs=38.9
Q ss_pred eeEecccCCCCCeeeccCccCCCcceecHHHHHHHHHhcCCCcccCC
Q 023042 202 CRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVC 248 (288)
Q Consensus 202 CRICle~~e~g~~Li~PC~CkGsl~~vH~~CL~kWL~~kg~~~CEIC 248 (288)
||||+++++++++|+.||.|+|+++|||+.||.+|+..+++..|++|
T Consensus 1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 99999988776789999999999999999999999999999999998
No 3
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=99.62 E-value=3e-16 Score=136.94 Aligned_cols=59 Identities=29% Similarity=0.720 Sum_probs=52.6
Q ss_pred cccCCCCeeeEecccCCCCCeeeccCccCCCcceecHHHHHHHHHhcCCCcccCCCcccccc
Q 023042 194 EIAEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQNL 255 (288)
Q Consensus 194 e~~ee~~~CRICle~~e~g~~Li~PC~CkGsl~~vH~~CL~kWL~~kg~~~CEICK~ey~~v 255 (288)
+.+..++.||||+++.+ .+..||+|+|+++|||++||++|+..+++..||+|+++|.+.
T Consensus 3 ~~s~~~~~CRIC~~~~~---~~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i~ 61 (162)
T PHA02825 3 DVSLMDKCCWICKDEYD---VVTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNIK 61 (162)
T ss_pred CcCCCCCeeEecCCCCC---CccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEEE
Confidence 45578899999998743 356899999999999999999999999999999999999876
No 4
>PHA02862 5L protein; Provisional
Probab=99.61 E-value=2.6e-16 Score=135.84 Aligned_cols=54 Identities=28% Similarity=0.777 Sum_probs=48.6
Q ss_pred CCeeeEecccCCCCCeeeccCccCCCcceecHHHHHHHHHhcCCCcccCCCcccccc
Q 023042 199 EAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQNL 255 (288)
Q Consensus 199 ~~~CRICle~~e~g~~Li~PC~CkGsl~~vH~~CL~kWL~~kg~~~CEICK~ey~~v 255 (288)
..+||||+++++++ +.||+|+|+++|||++||.+|++.+++..||+|+++|.+.
T Consensus 2 ~diCWIC~~~~~e~---~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~Ik 55 (156)
T PHA02862 2 SDICWICNDVCDER---NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNIK 55 (156)
T ss_pred CCEEEEecCcCCCC---cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEEE
Confidence 46899999986443 6999999999999999999999999999999999999864
No 5
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=99.47 E-value=1.7e-14 Score=149.47 Aligned_cols=62 Identities=29% Similarity=0.766 Sum_probs=56.9
Q ss_pred CCCCeeeEecccCCCCCeeeccCccCCCcceecHHHHHHHHHhcCCCcccCCCcccccccce
Q 023042 197 EEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQNLPVT 258 (288)
Q Consensus 197 ee~~~CRICle~~e~g~~Li~PC~CkGsl~~vH~~CL~kWL~~kg~~~CEICK~ey~~vpv~ 258 (288)
++.+.||||.++..++++|..||+|.|+++|+|++||..|+..+++..|+||+++|++.-++
T Consensus 10 ~d~~~CRICr~e~~~d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~Fk~IY 71 (1175)
T COG5183 10 EDKRSCRICRTEDIRDDPLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKFKDIY 71 (1175)
T ss_pred ccchhceeecCCCCCCCcCcccccccchhHHHHHHHHHHHHhcCCCcceeeecceeeeeeec
Confidence 34489999999988889999999999999999999999999999999999999999876554
No 6
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=99.44 E-value=4.8e-14 Score=128.40 Aligned_cols=89 Identities=35% Similarity=0.621 Sum_probs=70.7
Q ss_pred CCCcccccCCCCeeeEecccCCCCC--eeeccCccCCCcceecHHHHHHHHHhcCCCcccCCCcccccccceeeccCchh
Q 023042 189 ENNDEEIAEEEAVCRICLDICEEGN--TLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQNLPVTLLRMSSSA 266 (288)
Q Consensus 189 e~~~ee~~ee~~~CRICle~~e~g~--~Li~PC~CkGsl~~vH~~CL~kWL~~kg~~~CEICK~ey~~vpv~llr~~s~~ 266 (288)
+++.++.+.++..||||+++.+..+ .++.||.|+|+++|+|+.|+++|+..+++..||+|++.|.+..+...+.....
T Consensus 68 ~~~~~~~~~~~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~~~~~~~~~~~~~ 147 (323)
T KOG1609|consen 68 EESLEESPSSGPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFINVGTKLKPLIVIS 147 (323)
T ss_pred CCccccCCCCCCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeecccccceecceeecceeehh
Confidence 3455666666899999998765433 68999999999999999999999999999999999999999988777776554
Q ss_pred hhccccccccc
Q 023042 267 QRDNRRNHSQQ 277 (288)
Q Consensus 267 ~~~~r~~~~~~ 277 (288)
....+....|.
T Consensus 148 ~~~~~~~~~~~ 158 (323)
T KOG1609|consen 148 KVRSGALSERT 158 (323)
T ss_pred hhhhHhhhhee
Confidence 44443443333
No 7
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.35 E-value=2.8e-13 Score=126.19 Aligned_cols=70 Identities=27% Similarity=0.570 Sum_probs=57.8
Q ss_pred ccccCCCCeeeEecccCCCC--CeeeccCccCCCcceecHHHHHHHHHhcC------CCcccCCCcccccccceeecc
Q 023042 193 EEIAEEEAVCRICLDICEEG--NTLKMECSCKGALRLVHEECAIRWFSTKG------NKNCEVCGKEVQNLPVTLLRM 262 (288)
Q Consensus 193 ee~~ee~~~CRICle~~e~g--~~Li~PC~CkGsl~~vH~~CL~kWL~~kg------~~~CEICK~ey~~vpv~llr~ 262 (288)
.+..+.++.||||+..+++. ..++.||.|+|+.|+||+.||.+|+.+|. ...|+.|+++|.++-+.+-+.
T Consensus 14 ~~~~e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYiiv~P~l~~~ 91 (293)
T KOG3053|consen 14 SDNQELERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYIIVFPQLGPF 91 (293)
T ss_pred CCccccceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchheeeccccChH
Confidence 45567889999999876543 24799999999999999999999998873 469999999999887665433
No 8
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=1.9e-08 Score=97.49 Aligned_cols=49 Identities=31% Similarity=0.817 Sum_probs=43.1
Q ss_pred CeeeEecccCCCCCee-eccCccCCCcceecHHHHHHHHHhcCCCcccCCCccccc
Q 023042 200 AVCRICLDICEEGNTL-KMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (288)
Q Consensus 200 ~~CRICle~~e~g~~L-i~PC~CkGsl~~vH~~CL~kWL~~kg~~~CEICK~ey~~ 254 (288)
..|.||+|++.+|+.| ++||+ |.+|..|++.||... ...||+||++...
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~-----H~FH~~CIDpWL~~~-r~~CPvCK~di~~ 279 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCS-----HKFHVNCIDPWLTQT-RTFCPVCKRDIRT 279 (348)
T ss_pred ceEEEeecccccCCeeeEecCC-----CchhhccchhhHhhc-CccCCCCCCcCCC
Confidence 7999999999999887 69998 689999999999886 3569999998653
No 9
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.43 E-value=8.2e-08 Score=65.89 Aligned_cols=43 Identities=33% Similarity=0.942 Sum_probs=34.1
Q ss_pred CeeeEecccCCCC-CeeeccCccCCCcceecHHHHHHHHHhcCCCcccCCC
Q 023042 200 AVCRICLDICEEG-NTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCG 249 (288)
Q Consensus 200 ~~CRICle~~e~g-~~Li~PC~CkGsl~~vH~~CL~kWL~~kg~~~CEICK 249 (288)
..|-||+++.+.+ ....++|. |.||..||.+|+..+ ..||+|+
T Consensus 1 d~C~IC~~~~~~~~~~~~l~C~-----H~fh~~Ci~~~~~~~--~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLPCG-----HVFHRSCIKEWLKRN--NSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEETTS-----EEEEHHHHHHHHHHS--SB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEccCC-----CeeCHHHHHHHHHhC--CcCCccC
Confidence 3699999998544 45578886 799999999999885 5999996
No 10
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.03 E-value=4.3e-06 Score=80.44 Aligned_cols=52 Identities=23% Similarity=0.647 Sum_probs=42.0
Q ss_pred cCCCCeeeEecccCCCCCee-eccCccCCCcceecHHHHHHHHHhcCCCcccCCCcccc
Q 023042 196 AEEEAVCRICLDICEEGNTL-KMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQ 253 (288)
Q Consensus 196 ~ee~~~CRICle~~e~g~~L-i~PC~CkGsl~~vH~~CL~kWL~~kg~~~CEICK~ey~ 253 (288)
.+.+-.|.||++.+..++.+ ++||+ |.+|..|+++|+.-- ...||+|+.+++
T Consensus 320 a~~GveCaICms~fiK~d~~~vlPC~-----H~FH~~Cv~kW~~~y-~~~CPvCrt~iP 372 (374)
T COG5540 320 ADKGVECAICMSNFIKNDRLRVLPCD-----HRFHVGCVDKWLLGY-SNKCPVCRTAIP 372 (374)
T ss_pred cCCCceEEEEhhhhcccceEEEeccC-----ceechhHHHHHHhhh-cccCCccCCCCC
Confidence 35668999999988655554 79999 689999999999832 358999999854
No 11
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.00 E-value=3.6e-06 Score=78.02 Aligned_cols=52 Identities=19% Similarity=0.546 Sum_probs=40.0
Q ss_pred CCCeeeEecccCCCCC------eeeccCccCCCcceecHHHHHHHHHhcCCCcccCCCccccccc
Q 023042 198 EEAVCRICLDICEEGN------TLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQNLP 256 (288)
Q Consensus 198 e~~~CRICle~~e~g~------~Li~PC~CkGsl~~vH~~CL~kWL~~kg~~~CEICK~ey~~vp 256 (288)
.+..|.||++...+.. .+..+|. |.||..||.+|+.. ..+||+|+..+..+-
T Consensus 173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~-----H~FC~~CI~~Wl~~--~~tCPlCR~~~~~v~ 230 (238)
T PHA02929 173 KDKECAICMEKVYDKEIKNMYFGILSNCN-----HVFCIECIDIWKKE--KNTCPVCRTPFISVI 230 (238)
T ss_pred CCCCCccCCcccccCccccccceecCCCC-----CcccHHHHHHHHhc--CCCCCCCCCEeeEEe
Confidence 4579999999754322 2356787 78999999999976 459999999988553
No 12
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=97.88 E-value=1.2e-05 Score=61.56 Aligned_cols=43 Identities=23% Similarity=0.692 Sum_probs=31.3
Q ss_pred CeeeEecccCCC--------C--Cee-eccCccCCCcceecHHHHHHHHHhcCCCcccCCC
Q 023042 200 AVCRICLDICEE--------G--NTL-KMECSCKGALRLVHEECAIRWFSTKGNKNCEVCG 249 (288)
Q Consensus 200 ~~CRICle~~e~--------g--~~L-i~PC~CkGsl~~vH~~CL~kWL~~kg~~~CEICK 249 (288)
..|.||++...+ + -.+ ..+|+ |.||..||.+||... .+||+|+
T Consensus 20 d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~-----H~FH~~Ci~~Wl~~~--~~CP~CR 73 (73)
T PF12678_consen 20 DNCAICREPLEDPCPECQAPQDECPIVWGPCG-----HIFHFHCISQWLKQN--NTCPLCR 73 (73)
T ss_dssp SBETTTTSBTTSTTCCHHHCTTTS-EEEETTS-----EEEEHHHHHHHHTTS--SB-TTSS
T ss_pred CcccccChhhhChhhhhcCCccccceEecccC-----CCEEHHHHHHHHhcC--CcCCCCC
Confidence 349999988721 1 222 46787 799999999999774 4999996
No 13
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=2e-05 Score=77.64 Aligned_cols=56 Identities=21% Similarity=0.753 Sum_probs=43.2
Q ss_pred CcccccCCCCeeeEecccC-CCC----------CeeeccCccCCCcceecHHHHHHHHHhcCCCcccCCCcccc
Q 023042 191 NDEEIAEEEAVCRICLDIC-EEG----------NTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQ 253 (288)
Q Consensus 191 ~~ee~~ee~~~CRICle~~-e~g----------~~Li~PC~CkGsl~~vH~~CL~kWL~~kg~~~CEICK~ey~ 253 (288)
.+|.....+..|-||+++. +.+ .+-.+||. |.+|-.||+.|+..+ .+|||||..+.
T Consensus 279 t~eql~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCG-----HilHl~CLknW~ERq--QTCPICr~p~i 345 (491)
T COG5243 279 TEEQLTNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCG-----HILHLHCLKNWLERQ--QTCPICRRPVI 345 (491)
T ss_pred hhhhhcCCCCeEEEecccccCCCCccCcccccCCccccccc-----ceeeHHHHHHHHHhc--cCCCcccCccc
Confidence 3444566788999999983 322 23478998 689999999999875 59999999843
No 14
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=97.73 E-value=3.2e-05 Score=50.51 Aligned_cols=45 Identities=22% Similarity=0.770 Sum_probs=34.2
Q ss_pred eeeEecccCCCCCeeeccCccCCCcceecHHHHHHHHHhcCCCcccCCCccc
Q 023042 201 VCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEV 252 (288)
Q Consensus 201 ~CRICle~~e~g~~Li~PC~CkGsl~~vH~~CL~kWL~~kg~~~CEICK~ey 252 (288)
.|.||++... ......+|. |.+|..|+..|+.. +...|++|+..+
T Consensus 1 ~C~iC~~~~~-~~~~~~~C~-----H~~c~~C~~~~~~~-~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFR-EPVVLLPCG-----HVFCRSCIDKWLKS-GKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhh-CceEecCCC-----ChhcHHHHHHHHHh-CcCCCCCCCCcC
Confidence 4889998762 233455687 57999999999987 457899999763
No 15
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=97.67 E-value=3.7e-05 Score=54.15 Aligned_cols=48 Identities=29% Similarity=0.761 Sum_probs=37.3
Q ss_pred CCCeeeEecccCCCCCeeeccCccCCCcce-ecHHHHHHHHHhcCCCcccCCCccccc
Q 023042 198 EEAVCRICLDICEEGNTLKMECSCKGALRL-VHEECAIRWFSTKGNKNCEVCGKEVQN 254 (288)
Q Consensus 198 e~~~CRICle~~e~g~~Li~PC~CkGsl~~-vH~~CL~kWL~~kg~~~CEICK~ey~~ 254 (288)
|+..|.||++... +.+..||+ |. +-..|+.+|+.. ...|++|+.++..
T Consensus 1 ~~~~C~iC~~~~~--~~~~~pCg-----H~~~C~~C~~~~~~~--~~~CP~Cr~~i~~ 49 (50)
T PF13920_consen 1 EDEECPICFENPR--DVVLLPCG-----HLCFCEECAERLLKR--KKKCPICRQPIES 49 (50)
T ss_dssp -HSB-TTTSSSBS--SEEEETTC-----EEEEEHHHHHHHHHT--TSBBTTTTBB-SE
T ss_pred CcCCCccCCccCC--ceEEeCCC-----ChHHHHHHhHHhccc--CCCCCcCChhhcC
Confidence 3568999998743 57889998 56 999999999984 5799999998764
No 16
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=97.61 E-value=6.1e-05 Score=60.32 Aligned_cols=52 Identities=27% Similarity=0.661 Sum_probs=38.1
Q ss_pred CCeeeEecccCCC--------CC--eeeccCccCCCcceecHHHHHHHHHhc-CCCcccCCCccccc
Q 023042 199 EAVCRICLDICEE--------GN--TLKMECSCKGALRLVHEECAIRWFSTK-GNKNCEVCGKEVQN 254 (288)
Q Consensus 199 ~~~CRICle~~e~--------g~--~Li~PC~CkGsl~~vH~~CL~kWL~~k-g~~~CEICK~ey~~ 254 (288)
+..|-||...++. |+ +++ -+.|. |.||..||.+|+... .+..||+|++++++
T Consensus 21 dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv-~g~C~---H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~ 83 (85)
T PF12861_consen 21 DDVCGICRMPFDGCCPDCKFPGDDCPLV-WGKCS---HNFHMHCILKWLSTQSSKGQCPMCRQPWKF 83 (85)
T ss_pred CCceeeEecccccCCCCccCCCCCCcee-eccCc---cHHHHHHHHHHHccccCCCCCCCcCCeeee
Confidence 6689999877652 22 332 23443 689999999999874 46799999999875
No 17
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=97.59 E-value=6.3e-05 Score=68.11 Aligned_cols=51 Identities=25% Similarity=0.605 Sum_probs=40.6
Q ss_pred CCCCeeeEecccCCCCCeeeccCccCCCcceecHHHHHHHHHhc--------------CCCcccCCCccccc
Q 023042 197 EEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTK--------------GNKNCEVCGKEVQN 254 (288)
Q Consensus 197 ee~~~CRICle~~e~g~~Li~PC~CkGsl~~vH~~CL~kWL~~k--------------g~~~CEICK~ey~~ 254 (288)
.+...|.||++... ++.+.+|. |.++..||.+|+..+ +...||+|+..+..
T Consensus 16 ~~~~~CpICld~~~--dPVvT~CG-----H~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~ 80 (193)
T PLN03208 16 GGDFDCNICLDQVR--DPVVTLCG-----HLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSE 80 (193)
T ss_pred CCccCCccCCCcCC--CcEEcCCC-----chhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCCh
Confidence 35678999998754 56888997 689999999998632 34689999999863
No 18
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=97.41 E-value=0.00012 Score=46.01 Aligned_cols=39 Identities=28% Similarity=0.907 Sum_probs=31.1
Q ss_pred eeEecccCCCCCeeeccCccCCCcceecHHHHHHHHHhcCCCcccCC
Q 023042 202 CRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVC 248 (288)
Q Consensus 202 CRICle~~e~g~~Li~PC~CkGsl~~vH~~CL~kWL~~kg~~~CEIC 248 (288)
|.||++. ..+..+.+|. |.+|..|+..|+. .+...|++|
T Consensus 1 C~iC~~~--~~~~~~~~C~-----H~~c~~C~~~~~~-~~~~~CP~C 39 (39)
T smart00184 1 CPICLEE--LKDPVVLPCG-----HTFCRSCIRKWLK-SGNNTCPIC 39 (39)
T ss_pred CCcCccC--CCCcEEecCC-----ChHHHHHHHHHHH-hCcCCCCCC
Confidence 7799877 3356788988 5799999999998 345679987
No 19
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=97.27 E-value=7.1e-05 Score=57.07 Aligned_cols=52 Identities=27% Similarity=0.654 Sum_probs=24.3
Q ss_pred CCeeeEecccCC-CCCeeeccC---ccCCCcceecHHHHHHHHHhcC---------CCcccCCCcccc
Q 023042 199 EAVCRICLDICE-EGNTLKMEC---SCKGALRLVHEECAIRWFSTKG---------NKNCEVCGKEVQ 253 (288)
Q Consensus 199 ~~~CRICle~~e-~g~~Li~PC---~CkGsl~~vH~~CL~kWL~~kg---------~~~CEICK~ey~ 253 (288)
+..|.||+.... .++....-| .|. +.+|..||.+||.... ...||.|+.++.
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~---~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCG---KKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT-------B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccC---CHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 457999998754 333323334 564 5799999999997531 236999999875
No 20
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.27 E-value=7.3e-05 Score=80.48 Aligned_cols=58 Identities=26% Similarity=0.740 Sum_probs=42.2
Q ss_pred ccCCCCeeeEecccCC-CCCeee-ccCc-cCCCcceecHHHHHHHHHhcCCCcccCCCcccccc
Q 023042 195 IAEEEAVCRICLDICE-EGNTLK-MECS-CKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQNL 255 (288)
Q Consensus 195 ~~ee~~~CRICle~~e-~g~~Li-~PC~-CkGsl~~vH~~CL~kWL~~kg~~~CEICK~ey~~v 255 (288)
.-+....|.||+.-.+ .+..+- .-|. |+ +-+|..||.+|+..+++.+||+|+.++.++
T Consensus 1465 ~fsG~eECaICYsvL~~vdr~lPskrC~TCk---nKFH~~CLyKWf~Ss~~s~CPlCRseitfv 1525 (1525)
T COG5219 1465 KFSGHEECAICYSVLDMVDRSLPSKRCATCK---NKFHTRCLYKWFASSARSNCPLCRSEITFV 1525 (1525)
T ss_pred hcCCcchhhHHHHHHHHHhccCCccccchhh---hhhhHHHHHHHHHhcCCCCCCccccccccC
Confidence 3456778999996543 222331 2233 54 469999999999999999999999988753
No 21
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=0.00041 Score=64.36 Aligned_cols=53 Identities=30% Similarity=0.624 Sum_probs=44.5
Q ss_pred ccCCCCeeeEecccCCCCCeeeccCccCCCcceecHHHHHHHHHhcC-CCcccCCCccccc
Q 023042 195 IAEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKG-NKNCEVCGKEVQN 254 (288)
Q Consensus 195 ~~ee~~~CRICle~~e~g~~Li~PC~CkGsl~~vH~~CL~kWL~~kg-~~~CEICK~ey~~ 254 (288)
.+...-.|-|||+.- .+++++.|. |++==-||.+|+.... ...||+||.++..
T Consensus 43 ~~~~~FdCNICLd~a--kdPVvTlCG-----HLFCWpClyqWl~~~~~~~~cPVCK~~Vs~ 96 (230)
T KOG0823|consen 43 RDGGFFDCNICLDLA--KDPVVTLCG-----HLFCWPCLYQWLQTRPNSKECPVCKAEVSI 96 (230)
T ss_pred CCCCceeeeeecccc--CCCEEeecc-----cceehHHHHHHHhhcCCCeeCCcccccccc
Confidence 456778999999874 368999998 6888899999998875 5678999999874
No 22
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.21 E-value=0.00019 Score=72.72 Aligned_cols=51 Identities=27% Similarity=0.826 Sum_probs=41.3
Q ss_pred ccCCCCeeeEecccCCCC-C--eeeccCccCCCcceecHHHHHHHHHhcCCCcccCCCccc
Q 023042 195 IAEEEAVCRICLDICEEG-N--TLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEV 252 (288)
Q Consensus 195 ~~ee~~~CRICle~~e~g-~--~Li~PC~CkGsl~~vH~~CL~kWL~~kg~~~CEICK~ey 252 (288)
.......|.||+++...+ + +-++||. |.+|..||..|+..+ .+|++|+..+
T Consensus 287 ~~~~~~~C~IC~e~l~~~~~~~~~rL~C~-----Hifh~~CL~~W~er~--qtCP~CR~~~ 340 (543)
T KOG0802|consen 287 LALSDELCIICLEELHSGHNITPKRLPCG-----HIFHDSCLRSWFERQ--QTCPTCRTVL 340 (543)
T ss_pred hhhcCCeeeeechhhccccccccceeecc-----cchHHHHHHHHHHHh--CcCCcchhhh
Confidence 445688999999987532 2 5689998 799999999999884 6999999943
No 23
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=97.16 E-value=0.00037 Score=46.65 Aligned_cols=41 Identities=27% Similarity=0.882 Sum_probs=33.8
Q ss_pred eeEecccCCCCCeeeccCccCCCcceecHHHHHHHHHhcCCCcccCC
Q 023042 202 CRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVC 248 (288)
Q Consensus 202 CRICle~~e~g~~Li~PC~CkGsl~~vH~~CL~kWL~~kg~~~CEIC 248 (288)
|.||++.... .....+|. |.|+..||.+|+...+...|++|
T Consensus 1 C~iC~~~~~~-~~~~~~C~-----H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFED-PVILLPCG-----HSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSS-EEEETTTS-----EEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccC-CCEEecCC-----CcchHHHHHHHHHhcCCccCCcC
Confidence 7899987653 22489998 68999999999997778899998
No 24
>PHA02926 zinc finger-like protein; Provisional
Probab=97.00 E-value=0.0005 Score=63.94 Aligned_cols=55 Identities=25% Similarity=0.694 Sum_probs=41.2
Q ss_pred CCCCeeeEecccC-C---CCC---eeeccCccCCCcceecHHHHHHHHHhc----CCCcccCCCccccccc
Q 023042 197 EEEAVCRICLDIC-E---EGN---TLKMECSCKGALRLVHEECAIRWFSTK----GNKNCEVCGKEVQNLP 256 (288)
Q Consensus 197 ee~~~CRICle~~-e---~g~---~Li~PC~CkGsl~~vH~~CL~kWL~~k----g~~~CEICK~ey~~vp 256 (288)
..+.+|-||++.. + .++ .+..+|+ |.|...|+.+|...+ ....||+|+..+.++-
T Consensus 168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~Cn-----HsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~ 233 (242)
T PHA02926 168 SKEKECGICYEVVYSKRLENDRYFGLLDSCN-----HIFCITCINIWHRTRRETGASDNCPICRTRFRNIT 233 (242)
T ss_pred cCCCCCccCccccccccccccccccccCCCC-----chHHHHHHHHHHHhccccCcCCcCCCCcceeeeec
Confidence 4568999999874 2 111 3466887 689999999999864 2467999999998653
No 25
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.92 E-value=0.0003 Score=55.89 Aligned_cols=51 Identities=25% Similarity=0.601 Sum_probs=38.6
Q ss_pred eeeEecccCCC--------C--CeeeccCccCCCcceecHHHHHHHHHhcC-CCcccCCCcccccc
Q 023042 201 VCRICLDICEE--------G--NTLKMECSCKGALRLVHEECAIRWFSTKG-NKNCEVCGKEVQNL 255 (288)
Q Consensus 201 ~CRICle~~e~--------g--~~Li~PC~CkGsl~~vH~~CL~kWL~~kg-~~~CEICK~ey~~v 255 (288)
+|-||...++. | -+|+.. .|. +.||.-|+.+|+..+. ...|+.|++++++.
T Consensus 22 ~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G-~C~---h~fh~hCI~~wl~~~tsq~~CPmcRq~~~~~ 83 (84)
T KOG1493|consen 22 TCGICRMPFDGCCPDCKLPGDDCPLVWG-YCL---HAFHAHCILKWLNTPTSQGQCPMCRQTWQFK 83 (84)
T ss_pred ccceEecccCCcCCCCcCCCCCCccHHH-HHH---HHHHHHHHHHHhcCccccccCCcchheeEec
Confidence 89999987752 2 256544 332 7899999999998764 46999999998753
No 26
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.84 E-value=0.0007 Score=68.98 Aligned_cols=57 Identities=23% Similarity=0.585 Sum_probs=41.6
Q ss_pred CcccccCCCCeeeEecccCC---C------------CCeeeccCccCCCcceecHHHHHHHHHhcCCCcccCCCcccc
Q 023042 191 NDEEIAEEEAVCRICLDICE---E------------GNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQ 253 (288)
Q Consensus 191 ~~ee~~ee~~~CRICle~~e---~------------g~~Li~PC~CkGsl~~vH~~CL~kWL~~kg~~~CEICK~ey~ 253 (288)
.++.-.+....|.||+..-+ . .+-++.||+ |.+|..||++|...- +-.|++|+....
T Consensus 563 h~~~~~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~-----HifH~~CL~~WMd~y-kl~CPvCR~pLP 634 (636)
T KOG0828|consen 563 HLEAFVRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCH-----HIFHRQCLLQWMDTY-KLICPVCRCPLP 634 (636)
T ss_pred cccchhhccccceEeccccceeeccCcchhhhhhhhccccccchH-----HHHHHHHHHHHHhhh-cccCCccCCCCC
Confidence 33444567789999997642 1 123456998 799999999999842 358999998854
No 27
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=96.78 E-value=0.0012 Score=44.33 Aligned_cols=38 Identities=32% Similarity=0.818 Sum_probs=30.0
Q ss_pred eeEecccCCCCCe-eeccCccCCCcceecHHHHHHHHHhcCCCcccCC
Q 023042 202 CRICLDICEEGNT-LKMECSCKGALRLVHEECAIRWFSTKGNKNCEVC 248 (288)
Q Consensus 202 CRICle~~e~g~~-Li~PC~CkGsl~~vH~~CL~kWL~~kg~~~CEIC 248 (288)
|.||++... ++ .+.+|. |.+...|+.+|+.. +..|++|
T Consensus 1 C~iC~~~~~--~~~~~~~CG-----H~fC~~C~~~~~~~--~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELR--DPVVVTPCG-----HSFCKECIEKYLEK--NPKCPVC 39 (39)
T ss_dssp ETTTTSB-S--SEEEECTTS-----EEEEHHHHHHHHHC--TSB-TTT
T ss_pred CCCCCCccc--CcCEECCCC-----CchhHHHHHHHHHC--cCCCcCC
Confidence 789988654 36 579998 78999999999988 3799998
No 28
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=96.56 E-value=0.003 Score=45.32 Aligned_cols=45 Identities=13% Similarity=0.400 Sum_probs=37.2
Q ss_pred CeeeEecccCCCCCeeeccCccCCCcceecHHHHHHHHHhcCCCcccCCCcccc
Q 023042 200 AVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQ 253 (288)
Q Consensus 200 ~~CRICle~~e~g~~Li~PC~CkGsl~~vH~~CL~kWL~~kg~~~CEICK~ey~ 253 (288)
-.|.||++..+ ++++.||. +.+-+.|+.+|+.. ..+|++|+..+.
T Consensus 2 ~~Cpi~~~~~~--~Pv~~~~G-----~v~~~~~i~~~~~~--~~~cP~~~~~~~ 46 (63)
T smart00504 2 FLCPISLEVMK--DPVILPSG-----QTYERRAIEKWLLS--HGTDPVTGQPLT 46 (63)
T ss_pred cCCcCCCCcCC--CCEECCCC-----CEEeHHHHHHHHHH--CCCCCCCcCCCC
Confidence 46999998764 47888885 78999999999987 468999998874
No 29
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.54 E-value=0.0032 Score=61.57 Aligned_cols=53 Identities=23% Similarity=0.525 Sum_probs=38.6
Q ss_pred cccCCCCeeeEecccCCCCCeeeccCccCCCcceecHHHHHHHHHhcCCCcccCCCccccc
Q 023042 194 EIAEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (288)
Q Consensus 194 e~~ee~~~CRICle~~e~g~~Li~PC~CkGsl~~vH~~CL~kWL~~kg~~~CEICK~ey~~ 254 (288)
++.++++.|-||+.+. .+.+++||+.- =+=..|.+...-. .+.||||++.+..
T Consensus 285 ~~~~~gkeCVIClse~--rdt~vLPCRHL----CLCs~Ca~~Lr~q--~n~CPICRqpi~~ 337 (349)
T KOG4265|consen 285 DESESGKECVICLSES--RDTVVLPCRHL----CLCSGCAKSLRYQ--TNNCPICRQPIEE 337 (349)
T ss_pred ccccCCCeeEEEecCC--cceEEecchhh----ehhHhHHHHHHHh--hcCCCccccchHh
Confidence 3557799999999864 46889998721 1345788776633 3579999999874
No 30
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.44 E-value=0.0018 Score=64.36 Aligned_cols=46 Identities=28% Similarity=0.775 Sum_probs=34.2
Q ss_pred CCeeeEecccCCCCCee--eccCccCCCcceecHHHHHHHHHhcCC-CcccCCC
Q 023042 199 EAVCRICLDICEEGNTL--KMECSCKGALRLVHEECAIRWFSTKGN-KNCEVCG 249 (288)
Q Consensus 199 ~~~CRICle~~e~g~~L--i~PC~CkGsl~~vH~~CL~kWL~~kg~-~~CEICK 249 (288)
.+.|.||-+.......+ +.-|. |.||..||.+||...-. +.||||+
T Consensus 4 ~A~C~Ic~d~~p~~~~l~~i~~cG-----hifh~~cl~qwfe~~Ps~R~cpic~ 52 (465)
T KOG0827|consen 4 MAECHICIDGRPNDHELGPIGTCG-----HIFHTTCLTQWFEGDPSNRGCPICQ 52 (465)
T ss_pred cceeeEeccCCccccccccccchh-----hHHHHHHHHHHHccCCccCCCCcee
Confidence 46899995554332333 55576 68999999999987643 7999999
No 31
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.29 E-value=0.0041 Score=59.52 Aligned_cols=62 Identities=27% Similarity=0.589 Sum_probs=49.1
Q ss_pred CcccccCCCCeeeEecccCCCCCeeeccCccCCCcceecHHHHHHHHHhcCCCcccCCCcccccccceeec
Q 023042 191 NDEEIAEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQNLPVTLLR 261 (288)
Q Consensus 191 ~~ee~~ee~~~CRICle~~e~g~~Li~PC~CkGsl~~vH~~CL~kWL~~kg~~~CEICK~ey~~vpv~llr 261 (288)
.+..+++....|-||++.-. ++-.+||. |.|=-.||..|..++. .||+|+..++.--+-.||
T Consensus 231 ~~~~i~~a~~kC~LCLe~~~--~pSaTpCG-----HiFCWsCI~~w~~ek~--eCPlCR~~~~pskvi~Lr 292 (293)
T KOG0317|consen 231 SLSSIPEATRKCSLCLENRS--NPSATPCG-----HIFCWSCILEWCSEKA--ECPLCREKFQPSKVICLR 292 (293)
T ss_pred CCccCCCCCCceEEEecCCC--CCCcCcCc-----chHHHHHHHHHHcccc--CCCcccccCCCcceeeec
Confidence 44566778899999998643 46689998 6888899999999864 699999998865555554
No 32
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=96.09 E-value=0.0049 Score=42.51 Aligned_cols=43 Identities=23% Similarity=0.600 Sum_probs=35.0
Q ss_pred eeeEecccCC-CCCeeeccCccCCCcceecHHHHHHHHHhcCCCcccCCCc
Q 023042 201 VCRICLDICE-EGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGK 250 (288)
Q Consensus 201 ~CRICle~~e-~g~~Li~PC~CkGsl~~vH~~CL~kWL~~kg~~~CEICK~ 250 (288)
.|-||++.+. +...++++|. |.+...|+.++. .....|++|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~Cg-----H~~C~~C~~~~~--~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCG-----HIFCEKCLKKLK--GKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccC-----CHHHHHHHHhhc--CCCCCCcCCCC
Confidence 3889999883 3456789998 789999999999 45679999984
No 33
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.07 E-value=0.0037 Score=62.09 Aligned_cols=50 Identities=26% Similarity=0.557 Sum_probs=41.0
Q ss_pred cCCCCeeeEecccCCCCCeeeccCccCCCcceecHHHHHHHHHhcCCCcccCCCccccc
Q 023042 196 AEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (288)
Q Consensus 196 ~ee~~~CRICle~~e~g~~Li~PC~CkGsl~~vH~~CL~kWL~~kg~~~CEICK~ey~~ 254 (288)
-+....|.||++.+. ++++.+|. |.|...|+..|+... ..|++|+..+..
T Consensus 23 Le~~l~C~IC~d~~~--~PvitpCg-----H~FCs~CI~~~l~~~--~~CP~Cr~~~~~ 72 (397)
T TIGR00599 23 LDTSLRCHICKDFFD--VPVLTSCS-----HTFCSLCIRRCLSNQ--PKCPLCRAEDQE 72 (397)
T ss_pred cccccCCCcCchhhh--CccCCCCC-----CchhHHHHHHHHhCC--CCCCCCCCcccc
Confidence 346679999998764 46788998 689999999999874 489999998864
No 34
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=95.96 E-value=0.0024 Score=64.34 Aligned_cols=48 Identities=25% Similarity=0.732 Sum_probs=38.4
Q ss_pred CCCCeeeEecccCCCC--CeeeccCccCCCcceecHHHHHHHHHhcCCCcccCCCcccc
Q 023042 197 EEEAVCRICLDICEEG--NTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQ 253 (288)
Q Consensus 197 ee~~~CRICle~~e~g--~~Li~PC~CkGsl~~vH~~CL~kWL~~kg~~~CEICK~ey~ 253 (288)
.|.+.|.+||+..+++ ..+...|+ |-||-.||.+|-.. .|++|++--.
T Consensus 173 tELPTCpVCLERMD~s~~gi~t~~c~-----Hsfh~~cl~~w~~~----scpvcR~~q~ 222 (493)
T KOG0804|consen 173 TELPTCPVCLERMDSSTTGILTILCN-----HSFHCSCLMKWWDS----SCPVCRYCQS 222 (493)
T ss_pred ccCCCcchhHhhcCccccceeeeecc-----cccchHHHhhcccC----cChhhhhhcC
Confidence 5779999999987653 34556787 67999999999866 6999988755
No 35
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=95.45 E-value=0.0048 Score=59.82 Aligned_cols=52 Identities=21% Similarity=0.506 Sum_probs=39.7
Q ss_pred CCCeeeEecccCCCCCee-eccCccCCCcceecHHHHHHHHHhc---------------------CCCcccCCCccccc
Q 023042 198 EEAVCRICLDICEEGNTL-KMECSCKGALRLVHEECAIRWFSTK---------------------GNKNCEVCGKEVQN 254 (288)
Q Consensus 198 e~~~CRICle~~e~g~~L-i~PC~CkGsl~~vH~~CL~kWL~~k---------------------g~~~CEICK~ey~~ 254 (288)
-...|-|||-++-+++.+ +.+|. ||+|..||.++|..- -...|+||+..+..
T Consensus 114 p~gqCvICLygfa~~~~ft~T~C~-----Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~ 187 (368)
T KOG4445|consen 114 PNGQCVICLYGFASSPAFTVTACD-----HYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKI 187 (368)
T ss_pred CCCceEEEEEeecCCCceeeehhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhccc
Confidence 345799999887666644 79998 799999998887642 13579999998753
No 36
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.31 E-value=0.046 Score=49.54 Aligned_cols=57 Identities=23% Similarity=0.516 Sum_probs=43.7
Q ss_pred CCCcccccCCCCeeeEecccCCCCCeeeccCccCCCcceecHHHHHHHHHhcCCCcccCCCccc
Q 023042 189 ENNDEEIAEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEV 252 (288)
Q Consensus 189 e~~~ee~~ee~~~CRICle~~e~g~~Li~PC~CkGsl~~vH~~CL~kWL~~kg~~~CEICK~ey 252 (288)
.+.++...++-.-|-|||+.+++..++-.-|+ |.|=.+||+.-++. ...||+|+..+
T Consensus 121 k~v~~~~~~~~~~CPiCl~~~sek~~vsTkCG-----HvFC~~Cik~alk~--~~~CP~C~kkI 177 (187)
T KOG0320|consen 121 KDVDPLRKEGTYKCPICLDSVSEKVPVSTKCG-----HVFCSQCIKDALKN--TNKCPTCRKKI 177 (187)
T ss_pred ccccccccccccCCCceecchhhccccccccc-----hhHHHHHHHHHHHh--CCCCCCccccc
Confidence 34455555667899999998876555557787 68999999999876 57999999754
No 37
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.92 E-value=0.0093 Score=59.71 Aligned_cols=65 Identities=26% Similarity=0.651 Sum_probs=48.9
Q ss_pred CCCCeeeEecccCC-CCC-eee-ccCccCCCcceecHHHHHHHHHhcCCCcccCCCcccc---cccceeeccCchh
Q 023042 197 EEEAVCRICLDICE-EGN-TLK-MECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQ---NLPVTLLRMSSSA 266 (288)
Q Consensus 197 ee~~~CRICle~~e-~g~-~Li-~PC~CkGsl~~vH~~CL~kWL~~kg~~~CEICK~ey~---~vpv~llr~~s~~ 266 (288)
+.+..|.||++..+ .|| .++ +-|. +.|-..|+++||..+....|++|+.+.. ..+.+.+|++..-
T Consensus 2 d~g~tcpiclds~~~~g~hr~vsl~cg-----hlFgs~cie~wl~k~~~~~cp~c~~katkr~i~~e~alR~qa~d 72 (463)
T KOG1645|consen 2 DCGTTCPICLDSYTTAGNHRIVSLQCG-----HLFGSQCIEKWLGKKTKMQCPLCSGKATKRQIRPEYALRVQAMD 72 (463)
T ss_pred CccccCceeeeeeeecCceEEeeeccc-----ccccHHHHHHHHhhhhhhhCcccCChhHHHHHHHHHHHHHHHHh
Confidence 45678999999874 455 344 4565 6899999999997656789999998765 3556778877653
No 38
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=94.84 E-value=0.026 Score=45.41 Aligned_cols=32 Identities=28% Similarity=0.613 Sum_probs=27.1
Q ss_pred ccCccCCCcceecHHHHHHHHHhcCCCcccCCCcccccc
Q 023042 217 MECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQNL 255 (288)
Q Consensus 217 ~PC~CkGsl~~vH~~CL~kWL~~kg~~~CEICK~ey~~v 255 (288)
.-|+ |.||.-|+.+||..++ .||+|++++...
T Consensus 52 G~Cn-----HaFH~HCI~rWL~Tk~--~CPld~q~w~~~ 83 (88)
T COG5194 52 GVCN-----HAFHDHCIYRWLDTKG--VCPLDRQTWVLA 83 (88)
T ss_pred Eecc-----hHHHHHHHHHHHhhCC--CCCCCCceeEEe
Confidence 4576 6899999999999965 999999998753
No 39
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=94.82 E-value=0.017 Score=41.94 Aligned_cols=46 Identities=17% Similarity=0.504 Sum_probs=23.3
Q ss_pred eeEecccCCCCCeeeccCccCCCcceecHHHHHHHHHhc--CCCcccCCCcccc
Q 023042 202 CRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTK--GNKNCEVCGKEVQ 253 (288)
Q Consensus 202 CRICle~~e~g~~Li~PC~CkGsl~~vH~~CL~kWL~~k--g~~~CEICK~ey~ 253 (288)
|.+|.+..+..+.-..||.|. ++-|+.=|.... .+..||-||.+|.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cg------f~IC~~C~~~i~~~~~g~CPgCr~~Y~ 48 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECG------FQICRFCYHDILENEGGRCPGCREPYK 48 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----------HHHHHHHTTSS-SB-TTT--B--
T ss_pred CCCcccccccCCCccccCcCC------CcHHHHHHHHHHhccCCCCCCCCCCCC
Confidence 667887765545557899994 567888888776 3789999999984
No 40
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=94.25 E-value=0.039 Score=38.16 Aligned_cols=40 Identities=25% Similarity=0.733 Sum_probs=29.1
Q ss_pred eeEecccCCCCCeeeccCccCCCcceecHHHHHHHHHhcCC--CcccCC
Q 023042 202 CRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGN--KNCEVC 248 (288)
Q Consensus 202 CRICle~~e~g~~Li~PC~CkGsl~~vH~~CL~kWL~~kg~--~~CEIC 248 (288)
|.||++-+. +++.++|. |.|=+.||.+|....+. ..|++|
T Consensus 1 CpiC~~~~~--~Pv~l~CG-----H~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFK--DPVSLPCG-----HSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-S--SEEE-SSS-----SEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhC--CccccCCc-----CHHHHHHHHHHHHccCCcCCCCcCC
Confidence 789998765 58899998 68889999999987644 589988
No 41
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=92.66 E-value=0.094 Score=39.81 Aligned_cols=49 Identities=10% Similarity=0.285 Sum_probs=35.3
Q ss_pred CCCeeeEecccCCCCCeeeccCccCCCcceecHHHHHHHHHhcCCCcccCCCccccc
Q 023042 198 EEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (288)
Q Consensus 198 e~~~CRICle~~e~g~~Li~PC~CkGsl~~vH~~CL~kWL~~kg~~~CEICK~ey~~ 254 (288)
++-.|-||++-.. ++.+.||. +.+=+.|+++|+.. +..+|++|+..+..
T Consensus 3 ~~f~CpIt~~lM~--dPVi~~~G-----~tyer~~I~~~l~~-~~~~~P~t~~~l~~ 51 (73)
T PF04564_consen 3 DEFLCPITGELMR--DPVILPSG-----HTYERSAIERWLEQ-NGGTDPFTRQPLSE 51 (73)
T ss_dssp GGGB-TTTSSB-S--SEEEETTS-----EEEEHHHHHHHHCT-TSSB-TTT-SB-SG
T ss_pred cccCCcCcCcHhh--CceeCCcC-----CEEcHHHHHHHHHc-CCCCCCCCCCcCCc
Confidence 3457888887654 58889876 68999999999987 45799999988764
No 42
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.64 E-value=0.026 Score=54.19 Aligned_cols=52 Identities=31% Similarity=0.744 Sum_probs=39.9
Q ss_pred CCCCeeeEecccCC-----CC---CeeeccCccCCCcceecHHHHHHHHHhcCCCcccCCCcccc
Q 023042 197 EEEAVCRICLDICE-----EG---NTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQ 253 (288)
Q Consensus 197 ee~~~CRICle~~e-----~g---~~Li~PC~CkGsl~~vH~~CL~kWL~~kg~~~CEICK~ey~ 253 (288)
-++.+|.||-...+ +| +.-.+-|+ |.+|+-|+.-|...-+..+||-||..+.
T Consensus 222 l~d~vCaVCg~~~~~s~~eegvienty~LsCn-----HvFHEfCIrGWcivGKkqtCPYCKekVd 281 (328)
T KOG1734|consen 222 LSDSVCAVCGQQIDVSVDEEGVIENTYKLSCN-----HVFHEFCIRGWCIVGKKQTCPYCKEKVD 281 (328)
T ss_pred CCcchhHhhcchheeecchhhhhhhheeeecc-----cchHHHhhhhheeecCCCCCchHHHHhh
Confidence 35578999976532 11 33467898 6899999999998777789999999865
No 43
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=92.39 E-value=0.11 Score=36.55 Aligned_cols=40 Identities=20% Similarity=0.600 Sum_probs=22.7
Q ss_pred eeEecccCCCCC-eeeccCccCCCcceecHHHHHHHHHhc--CCCccc
Q 023042 202 CRICLDICEEGN-TLKMECSCKGALRLVHEECAIRWFSTK--GNKNCE 246 (288)
Q Consensus 202 CRICle~~e~g~-~Li~PC~CkGsl~~vH~~CL~kWL~~k--g~~~CE 246 (288)
|-||++-.++++ +.+++|. |.+=++||++|+... +..+|+
T Consensus 1 CpIc~e~~~~~n~P~~L~CG-----H~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKEFSTEENPPMVLPCG-----HVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT----TTSS-EEE-SSS------EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCccccccCCCCCCEEEeCc-----cHHHHHHHHHHHhcCCCCeeeCc
Confidence 778988323333 6889998 689999999999865 455664
No 44
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=92.36 E-value=0.036 Score=55.79 Aligned_cols=57 Identities=19% Similarity=0.518 Sum_probs=44.8
Q ss_pred ccccCCCCeeeEecccCCCCCeeeccCccCCCcceecHHHHHHHHHhcCCCcccCCCccccccc
Q 023042 193 EEIAEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQNLP 256 (288)
Q Consensus 193 ee~~ee~~~CRICle~~e~g~~Li~PC~CkGsl~~vH~~CL~kWL~~kg~~~CEICK~ey~~vp 256 (288)
-++...-..|.||-+.. .+.-+-||. |+.-..||-.|....+...|+.|+++++..-
T Consensus 363 ceMgsTFeLCKICaend--KdvkIEPCG-----HLlCt~CLa~WQ~sd~gq~CPFCRcEIKGte 419 (563)
T KOG1785|consen 363 CEMGSTFELCKICAEND--KDVKIEPCG-----HLLCTSCLAAWQDSDEGQTCPFCRCEIKGTE 419 (563)
T ss_pred HHccchHHHHHHhhccC--CCccccccc-----chHHHHHHHhhcccCCCCCCCceeeEecccc
Confidence 34455567899997653 245688998 5788899999998887889999999998543
No 45
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.99 E-value=0.063 Score=45.84 Aligned_cols=48 Identities=31% Similarity=0.715 Sum_probs=39.4
Q ss_pred cccCCCCeeeEecccCCCCCeeeccCccCCCcceecHHHHHHHHHhcCCCcccCCCc
Q 023042 194 EIAEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGK 250 (288)
Q Consensus 194 e~~ee~~~CRICle~~e~g~~Li~PC~CkGsl~~vH~~CL~kWL~~kg~~~CEICK~ 250 (288)
+..+++-.|.||++.+.+ +.++||. |.+=..||..|+. ....||.|+.
T Consensus 8 ~~~~~~~~C~iC~~~~~~--p~~l~C~-----H~~c~~C~~~~~~--~~~~Cp~cr~ 55 (386)
T KOG2177|consen 8 EVLQEELTCPICLEYFRE--PVLLPCG-----HNFCRACLTRSWE--GPLSCPVCRP 55 (386)
T ss_pred hhccccccChhhHHHhhc--Ccccccc-----chHhHHHHHHhcC--CCcCCcccCC
Confidence 345688999999998754 3788998 5778899999998 5689999994
No 46
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=91.89 E-value=0.06 Score=46.61 Aligned_cols=42 Identities=19% Similarity=0.463 Sum_probs=29.8
Q ss_pred CCCeeeEecccCCC-CCeeeccCccCCCc-ceecHHHHHHHHHh
Q 023042 198 EEAVCRICLDICEE-GNTLKMECSCKGAL-RLVHEECAIRWFST 239 (288)
Q Consensus 198 e~~~CRICle~~e~-g~~Li~PC~CkGsl-~~vH~~CL~kWL~~ 239 (288)
-...|+||++.-.. ++.+..+|...-.+ +.+|..|+++|-+.
T Consensus 25 ~~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~~ 68 (134)
T PF05883_consen 25 CTVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRRE 68 (134)
T ss_pred cCeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHhh
Confidence 46789999988654 45566777644333 45999999999544
No 47
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=91.40 E-value=0.11 Score=43.56 Aligned_cols=32 Identities=28% Similarity=0.529 Sum_probs=26.4
Q ss_pred ccCccCCCcceecHHHHHHHHHhcCCCcccCCCcccccc
Q 023042 217 MECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQNL 255 (288)
Q Consensus 217 ~PC~CkGsl~~vH~~CL~kWL~~kg~~~CEICK~ey~~v 255 (288)
.-|+ |-||.-|+.+||+.+ ..||+|..+..+.
T Consensus 79 G~CN-----HaFH~hCisrWlktr--~vCPLdn~eW~~q 110 (114)
T KOG2930|consen 79 GVCN-----HAFHFHCISRWLKTR--NVCPLDNKEWVFQ 110 (114)
T ss_pred eecc-----hHHHHHHHHHHHhhc--CcCCCcCcceeEe
Confidence 4576 689999999999885 5999999987643
No 48
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.33 E-value=0.11 Score=46.92 Aligned_cols=34 Identities=32% Similarity=0.901 Sum_probs=26.2
Q ss_pred cccccCCCCeeeEecccCCCCCee-eccCccCCCcceecH
Q 023042 192 DEEIAEEEAVCRICLDICEEGNTL-KMECSCKGALRLVHE 230 (288)
Q Consensus 192 ~ee~~ee~~~CRICle~~e~g~~L-i~PC~CkGsl~~vH~ 230 (288)
++-..+..-+|-||+++.+.|+.+ .+||.| .+|.
T Consensus 170 dDVL~ddkGECvICLEdL~~GdtIARLPCLC-----IYHK 204 (205)
T KOG0801|consen 170 DDVLKDDKGECVICLEDLEAGDTIARLPCLC-----IYHK 204 (205)
T ss_pred cchhcccCCcEEEEhhhccCCCceeccceEE-----Eeec
Confidence 333446677899999999888876 799999 5664
No 49
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=91.32 E-value=0.26 Score=43.99 Aligned_cols=55 Identities=27% Similarity=0.651 Sum_probs=38.9
Q ss_pred CCCeeeEecccCCCCCeeeccCc----------cCCCcceecHHHHHHHHHhcC--------------------------
Q 023042 198 EEAVCRICLDICEEGNTLKMECS----------CKGALRLVHEECAIRWFSTKG-------------------------- 241 (288)
Q Consensus 198 e~~~CRICle~~e~g~~Li~PC~----------CkGsl~~vH~~CL~kWL~~kg-------------------------- 241 (288)
|+..|-||++-- -|.+.+-|. |.. .|-|..||+++-+..+
T Consensus 1 ed~~CpICme~P--HNAVLLlCSS~~kgcRpymc~T--s~rhSNCLdqfkka~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (162)
T PF07800_consen 1 EDVTCPICMEHP--HNAVLLLCSSHEKGCRPYMCDT--SYRHSNCLDQFKKAYGKSSSSSSQSSSSAPSDSSSSESSESQ 76 (162)
T ss_pred CCccCceeccCC--CceEEEEeccccCCccccccCC--ccchhHHHHHHHHHhcCCCCccccccccCcCCCccccccccc
Confidence 467899999863 345544443 543 4889999999986531
Q ss_pred ---CCcccCCCccccccc
Q 023042 242 ---NKNCEVCGKEVQNLP 256 (288)
Q Consensus 242 ---~~~CEICK~ey~~vp 256 (288)
...||+|+-++..+-
T Consensus 77 ~~~~L~CPLCRG~V~GWt 94 (162)
T PF07800_consen 77 EQPELACPLCRGEVKGWT 94 (162)
T ss_pred ccccccCccccCceeceE
Confidence 347999999987654
No 50
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=90.86 E-value=0.12 Score=55.85 Aligned_cols=53 Identities=25% Similarity=0.459 Sum_probs=39.2
Q ss_pred CCCeeeEecccCCCCCe-eeccCccCCCcceecHHHHHHHHHhcCCCcccCCCcccccccc
Q 023042 198 EEAVCRICLDICEEGNT-LKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQNLPV 257 (288)
Q Consensus 198 e~~~CRICle~~e~g~~-Li~PC~CkGsl~~vH~~CL~kWL~~kg~~~CEICK~ey~~vpv 257 (288)
....|.||+..+-++.. -..+|.| |||..||..|-... .+|++|+.+|--+-|
T Consensus 122 ~~~~CP~Ci~s~~DqL~~~~k~c~H-----~FC~~Ci~sWsR~a--qTCPiDR~EF~~v~V 175 (1134)
T KOG0825|consen 122 VENQCPNCLKSCNDQLEESEKHTAH-----YFCEECVGSWSRCA--QTCPVDRGEFGEVKV 175 (1134)
T ss_pred hhhhhhHHHHHHHHHhhcccccccc-----ccHHHHhhhhhhhc--ccCchhhhhhheeee
Confidence 45678888866543322 2467875 99999999999874 599999999975543
No 51
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=89.40 E-value=0.34 Score=47.05 Aligned_cols=50 Identities=18% Similarity=0.433 Sum_probs=36.3
Q ss_pred CCeeeEecccC--CCCC-eeeccCccCCCcceecHHHHHHHHHhcCCCcccCCCccccc
Q 023042 199 EAVCRICLDIC--EEGN-TLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (288)
Q Consensus 199 ~~~CRICle~~--e~g~-~Li~PC~CkGsl~~vH~~CL~kWL~~kg~~~CEICK~ey~~ 254 (288)
+..|.||.... ...- .++.+|. |.+=..|+.+.+.. +...|++|+..+..
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~CG-----H~~C~sCv~~l~~~-~~~~CP~C~~~lrk 55 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNVCG-----HTLCESCVDLLFVR-GSGSCPECDTPLRK 55 (309)
T ss_pred CCCCCcCCCCCccCcccccccCCCC-----CcccHHHHHHHhcC-CCCCCCCCCCccch
Confidence 36899999763 2222 3567887 56778999997654 56799999988764
No 52
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.04 E-value=0.32 Score=49.97 Aligned_cols=57 Identities=21% Similarity=0.605 Sum_probs=42.8
Q ss_pred CCeeeEecccCCCCCeeeccCccCCCcceecHHHHHHHHHhc---CCCcccCCCccccc---ccceeecc
Q 023042 199 EAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTK---GNKNCEVCGKEVQN---LPVTLLRM 262 (288)
Q Consensus 199 ~~~CRICle~~e~g~~Li~PC~CkGsl~~vH~~CL~kWL~~k---g~~~CEICK~ey~~---vpv~llr~ 262 (288)
+..|.|||+...- +..+-|. |++=-.||.+++... +-..|+||...+.. .|+.+..+
T Consensus 186 ~~~CPICL~~~~~--p~~t~CG-----HiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~~e~~ 248 (513)
T KOG2164|consen 186 DMQCPICLEPPSV--PVRTNCG-----HIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVFIEDD 248 (513)
T ss_pred CCcCCcccCCCCc--ccccccC-----ceeeHHHHHHHHhhhcccCCccCCchhhhccccceeeeeeccc
Confidence 8899999987542 3455587 688889999988654 56799999998876 55665544
No 53
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=88.92 E-value=0.34 Score=52.60 Aligned_cols=60 Identities=20% Similarity=0.547 Sum_probs=44.3
Q ss_pred cCCCCeeeEecccCCC-CCeeeccCccCCCcceecHHHHHHHHHhc-----CCCcccCCCccccccccee
Q 023042 196 AEEEAVCRICLDICEE-GNTLKMECSCKGALRLVHEECAIRWFSTK-----GNKNCEVCGKEVQNLPVTL 259 (288)
Q Consensus 196 ~ee~~~CRICle~~e~-g~~Li~PC~CkGsl~~vH~~CL~kWL~~k-----g~~~CEICK~ey~~vpv~l 259 (288)
.....+|-||++.... ...|- |+.-.+.||..|+.+|-... ..|.|+-|.+.++.+|.+.
T Consensus 188 ~~~~yeCmIC~e~I~~t~~~WS----C~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~~~~~~~y 253 (950)
T KOG1952|consen 188 SNRKYECMICTERIKRTAPVWS----CKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVSKTVPKTY 253 (950)
T ss_pred hcCceEEEEeeeeccccCCcee----cchhhhhhhHHHHHHHHHHhhhccCccccCCcccchhccCCccc
Confidence 3466899999987643 23342 22224789999999998764 3689999999999888754
No 54
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=88.89 E-value=0.19 Score=49.08 Aligned_cols=51 Identities=22% Similarity=0.393 Sum_probs=40.0
Q ss_pred CCCCeeeEecccCCCCCeeeccCccCCCcceecHHHHHHHHHhcCCCcccCCCccccccc
Q 023042 197 EEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQNLP 256 (288)
Q Consensus 197 ee~~~CRICle~~e~g~~Li~PC~CkGsl~~vH~~CL~kWL~~kg~~~CEICK~ey~~vp 256 (288)
+....|+||.+-.. -+++.+|. |-|-.-|+.+.|... -.|++|++++....
T Consensus 23 Ds~lrC~IC~~~i~--ip~~TtCg-----HtFCslCIR~hL~~q--p~CP~Cr~~~~esr 73 (391)
T COG5432 23 DSMLRCRICDCRIS--IPCETTCG-----HTFCSLCIRRHLGTQ--PFCPVCREDPCESR 73 (391)
T ss_pred hhHHHhhhhhheee--cceecccc-----cchhHHHHHHHhcCC--CCCccccccHHhhh
Confidence 34568999987543 36788887 568889999999874 58999999987654
No 55
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.72 E-value=0.38 Score=45.95 Aligned_cols=58 Identities=26% Similarity=0.502 Sum_probs=43.9
Q ss_pred cCCCCeeeEecccCCCCCeeeccCccCCCcceecHHHHHH-HHHhcCCCcccCCCcccccccceeec
Q 023042 196 AEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIR-WFSTKGNKNCEVCGKEVQNLPVTLLR 261 (288)
Q Consensus 196 ~ee~~~CRICle~~e~g~~Li~PC~CkGsl~~vH~~CL~k-WL~~kg~~~CEICK~ey~~vpv~llr 261 (288)
++....|-||++.-+ .+..+||. |.|=-.||.. |-..+ ...|++|+.....--+-++|
T Consensus 212 p~~d~kC~lC~e~~~--~ps~t~Cg-----HlFC~~Cl~~~~t~~k-~~~CplCRak~~pk~viilr 270 (271)
T COG5574 212 PLADYKCFLCLEEPE--VPSCTPCG-----HLFCLSCLLISWTKKK-YEFCPLCRAKVYPKKVIILR 270 (271)
T ss_pred cccccceeeeecccC--Cccccccc-----chhhHHHHHHHHHhhc-cccCchhhhhccchhhheec
Confidence 355678999998643 56789998 6888899999 88765 45699999987765554444
No 56
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=87.80 E-value=0.23 Score=38.66 Aligned_cols=34 Identities=24% Similarity=0.514 Sum_probs=25.6
Q ss_pred CCCCeeeEecccCCCCCeeeccCccCCCcceecHHHHHH
Q 023042 197 EEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIR 235 (288)
Q Consensus 197 ee~~~CRICle~~e~g~~Li~PC~CkGsl~~vH~~CL~k 235 (288)
+++..|.+|......+.-.+.||+ +.||..|+.+
T Consensus 76 ~~~~~C~vC~k~l~~~~f~~~p~~-----~v~H~~C~~r 109 (109)
T PF10367_consen 76 TESTKCSVCGKPLGNSVFVVFPCG-----HVVHYSCIKR 109 (109)
T ss_pred CCCCCccCcCCcCCCceEEEeCCC-----eEEecccccC
Confidence 456779999987755444578886 6899999753
No 57
>PLN02189 cellulose synthase
Probab=87.00 E-value=0.43 Score=52.76 Aligned_cols=51 Identities=27% Similarity=0.681 Sum_probs=35.9
Q ss_pred CCCeeeEecccC---CCCCeeeccCc-cCCCcceecHHHHHHHHHhcCCCcccCCCcccc
Q 023042 198 EEAVCRICLDIC---EEGNTLKMECS-CKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQ 253 (288)
Q Consensus 198 e~~~CRICle~~---e~g~~Li~PC~-CkGsl~~vH~~CL~kWL~~kg~~~CEICK~ey~ 253 (288)
...+|+||-++. .+|+.+ -.|+ |. --|=+.|. ..-...|+..|+.||+.|+
T Consensus 33 ~~~~C~iCgd~vg~~~~g~~f-vaC~~C~---fpvCr~Cy-eyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 33 DGQVCEICGDEIGLTVDGDLF-VACNECG---FPVCRPCY-EYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred cCccccccccccCcCCCCCEE-EeeccCC---Cccccchh-hhhhhcCCccCcccCCchh
Confidence 456999998874 345555 3555 42 12667898 4455568999999999998
No 58
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=86.83 E-value=1 Score=45.00 Aligned_cols=84 Identities=19% Similarity=0.386 Sum_probs=47.7
Q ss_pred cccccCCCCeeeEecccCCCCCeeeccCccCCCcceecHHHHHHHHHhcCCCcccCCCccccccccee---eccCchhhh
Q 023042 192 DEEIAEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQNLPVTL---LRMSSSAQR 268 (288)
Q Consensus 192 ~ee~~ee~~~CRICle~~e~g~~Li~PC~CkGsl~~vH~~CL~kWL~~kg~~~CEICK~ey~~vpv~l---lr~~s~~~~ 268 (288)
.+|.+++...|-||-....- .-+.||+. -+-..|..+...--.++.|.+|+.+...|-++- ..+...+++
T Consensus 54 addtDEen~~C~ICA~~~TY--s~~~PC~H-----~~CH~Ca~RlRALY~~K~C~~CrTE~e~V~fT~~~~~DI~D~~~~ 126 (493)
T COG5236 54 ADDTDEENMNCQICAGSTTY--SARYPCGH-----QICHACAVRLRALYMQKGCPLCRTETEAVVFTASSPADITDRRQW 126 (493)
T ss_pred ccccccccceeEEecCCceE--EEeccCCc-----hHHHHHHHHHHHHHhccCCCccccccceEEEecCCCCcchhHhhh
Confidence 34445677899999765432 23789983 223356555443333568999999987665542 223333344
Q ss_pred cccccccccccccc
Q 023042 269 DNRRNHSQQTMHSR 282 (288)
Q Consensus 269 ~~r~~~~~~~~~~~ 282 (288)
..+-..--+.|..|
T Consensus 127 k~~~EK~GI~y~~E 140 (493)
T COG5236 127 KGREEKVGIFYEGE 140 (493)
T ss_pred cccccceeeeecch
Confidence 44333333444444
No 59
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=86.50 E-value=0.69 Score=36.99 Aligned_cols=53 Identities=26% Similarity=0.473 Sum_probs=23.9
Q ss_pred CCCCeeeEecccC---CCCCeee--ccCccCCCcceecHHHHHHHHHhcCCCcccCCCcccccc
Q 023042 197 EEEAVCRICLDIC---EEGNTLK--MECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQNL 255 (288)
Q Consensus 197 ee~~~CRICle~~---e~g~~Li--~PC~CkGsl~~vH~~CL~kWL~~kg~~~CEICK~ey~~v 255 (288)
-...+|.||-+.. ..|+.++ +.|+ --|=+.|.+-=.+. |+..|+.|+.+|...
T Consensus 7 ~~~qiCqiCGD~VGl~~~Ge~FVAC~eC~-----fPvCr~CyEYErke-g~q~CpqCkt~ykr~ 64 (80)
T PF14569_consen 7 LNGQICQICGDDVGLTENGEVFVACHECA-----FPVCRPCYEYERKE-GNQVCPQCKTRYKRH 64 (80)
T ss_dssp -SS-B-SSS--B--B-SSSSB--S-SSS----------HHHHHHHHHT-S-SB-TTT--B----
T ss_pred cCCcccccccCccccCCCCCEEEEEcccC-----CccchhHHHHHhhc-CcccccccCCCcccc
Confidence 3568999998763 3566665 4454 24778998766654 789999999999854
No 60
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=85.66 E-value=0.59 Score=45.99 Aligned_cols=60 Identities=18% Similarity=0.477 Sum_probs=42.3
Q ss_pred CCCCeeeEecccCCCCC----ee-ecc-CccCCCcceecHHHHHHHHHhcC-----CCcccCCCcccccccceeec
Q 023042 197 EEEAVCRICLDICEEGN----TL-KME-CSCKGALRLVHEECAIRWFSTKG-----NKNCEVCGKEVQNLPVTLLR 261 (288)
Q Consensus 197 ee~~~CRICle~~e~g~----~L-i~P-C~CkGsl~~vH~~CL~kWL~~kg-----~~~CEICK~ey~~vpv~llr 261 (288)
..+.+|-||++...+-. .+ ++| |. |.+=..|+.+|-.... ...||+|+..-.++=...+.
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~-----H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v~pS~~W 229 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCN-----HSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSFVNPSSFW 229 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcc-----hhhhhcHhHhhhhhhccccccccCCCcccCcccccccccee
Confidence 56789999998753211 12 444 76 4667799999996654 68999999988876555433
No 61
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=85.17 E-value=0.31 Score=48.41 Aligned_cols=47 Identities=23% Similarity=0.534 Sum_probs=38.5
Q ss_pred CCCeeeEecccCCCCCeeeccCccCCCcceecHHHHHHHHHhcCCCcccCCCcccc
Q 023042 198 EEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQ 253 (288)
Q Consensus 198 e~~~CRICle~~e~g~~Li~PC~CkGsl~~vH~~CL~kWL~~kg~~~CEICK~ey~ 253 (288)
.--.|-||++-+. -+++.||. |-|-.-|+.++|..+ ..||.|..++.
T Consensus 22 ~lLRC~IC~eyf~--ip~itpCs-----HtfCSlCIR~~L~~~--p~CP~C~~~~~ 68 (442)
T KOG0287|consen 22 DLLRCGICFEYFN--IPMITPCS-----HTFCSLCIRKFLSYK--PQCPTCCVTVT 68 (442)
T ss_pred HHHHHhHHHHHhc--Cceecccc-----chHHHHHHHHHhccC--CCCCceecccc
Confidence 4567999998664 37899997 567889999999875 58999999875
No 62
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=85.04 E-value=0.72 Score=45.97 Aligned_cols=55 Identities=20% Similarity=0.582 Sum_probs=39.0
Q ss_pred CCCCeeeEecccCCCCCeeeccCccCCCcceecHHHHHHHHHhcC--CCcccCCCcccccccc
Q 023042 197 EEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKG--NKNCEVCGKEVQNLPV 257 (288)
Q Consensus 197 ee~~~CRICle~~e~g~~Li~PC~CkGsl~~vH~~CL~kWL~~kg--~~~CEICK~ey~~vpv 257 (288)
+|++.|..|+++.+-.+.-.-||.|. | +-|--=|-..+. +.+|+.|+..|.---|
T Consensus 12 deed~cplcie~mditdknf~pc~cg----y--~ic~fc~~~irq~lngrcpacrr~y~denv 68 (480)
T COG5175 12 DEEDYCPLCIEPMDITDKNFFPCPCG----Y--QICQFCYNNIRQNLNGRCPACRRKYDDENV 68 (480)
T ss_pred cccccCcccccccccccCCcccCCcc----c--HHHHHHHHHHHhhccCCChHhhhhccccce
Confidence 45667999999876555556799983 2 456666766653 5699999998864433
No 63
>PLN02195 cellulose synthase A
Probab=84.69 E-value=0.95 Score=49.91 Aligned_cols=51 Identities=24% Similarity=0.533 Sum_probs=36.1
Q ss_pred CCCCeeeEecccC---CCCCeee--ccCccCCCcceecHHHHHHHHHhcCCCcccCCCcccc
Q 023042 197 EEEAVCRICLDIC---EEGNTLK--MECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQ 253 (288)
Q Consensus 197 ee~~~CRICle~~---e~g~~Li--~PC~CkGsl~~vH~~CL~kWL~~kg~~~CEICK~ey~ 253 (288)
....+|+||-+.. ..|++++ ..|. --|=+.|.+ .=..-|+..|+.||++|+
T Consensus 4 ~~~~~c~~cgd~~~~~~~g~~fvaC~eC~-----~pvCrpCye-yer~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 4 SGAPICATCGEEVGVDSNGEAFVACHECS-----YPLCKACLE-YEIKEGRKVCLRCGGPYD 59 (977)
T ss_pred CCCccceecccccCcCCCCCeEEEeccCC-----Cccccchhh-hhhhcCCccCCccCCccc
Confidence 3567999998764 3466665 4563 126668983 344458999999999999
No 64
>PLN02436 cellulose synthase A
Probab=84.30 E-value=0.69 Score=51.40 Aligned_cols=51 Identities=25% Similarity=0.628 Sum_probs=35.9
Q ss_pred CCCeeeEecccC---CCCCeeeccCc-cCCCcceecHHHHHHHHHhcCCCcccCCCcccc
Q 023042 198 EEAVCRICLDIC---EEGNTLKMECS-CKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQ 253 (288)
Q Consensus 198 e~~~CRICle~~---e~g~~Li~PC~-CkGsl~~vH~~CL~kWL~~kg~~~CEICK~ey~ 253 (288)
...+|.||-++. .+|+.++ .|+ |. --|=+.|. ..-...|+..|+.||+.|+
T Consensus 35 ~~~iCqICGD~Vg~t~dGe~FV-ACn~C~---fpvCr~Cy-eyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 35 SGQTCQICGDEIELTVDGEPFV-ACNECA---FPVCRPCY-EYERREGNQACPQCKTRYK 89 (1094)
T ss_pred CCccccccccccCcCCCCCEEE-eeccCC---Cccccchh-hhhhhcCCccCcccCCchh
Confidence 456999998873 3566664 344 31 12667898 4455568999999999998
No 65
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=83.23 E-value=1.2 Score=49.68 Aligned_cols=50 Identities=26% Similarity=0.548 Sum_probs=35.6
Q ss_pred CCCeeeEecccC---CCCCeee--ccCccCCCcceecHHHHHHHHHhcCCCcccCCCcccc
Q 023042 198 EEAVCRICLDIC---EEGNTLK--MECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQ 253 (288)
Q Consensus 198 e~~~CRICle~~---e~g~~Li--~PC~CkGsl~~vH~~CL~kWL~~kg~~~CEICK~ey~ 253 (288)
...+|+||-++- .+|+.++ ..|. --|=+.|.+ .=..-|+..|+.||++|+
T Consensus 16 ~~qiCqICGD~vg~~~~Ge~FVAC~eC~-----FPVCrpCYE-YEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 16 GGQVCQICGDNVGKTVDGEPFVACDVCA-----FPVCRPCYE-YERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred CCceeeecccccCcCCCCCEEEEeccCC-----Cccccchhh-hhhhcCCccCCccCCchh
Confidence 556999998774 3567765 5563 125568974 334447899999999999
No 66
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=83.21 E-value=1.1 Score=51.87 Aligned_cols=57 Identities=19% Similarity=0.665 Sum_probs=40.4
Q ss_pred ccCCCCeeeEecccC-CCCCeeeccCccCCCcceecHHHHHHHHHhc--------CCCcccCCCccccccc
Q 023042 195 IAEEEAVCRICLDIC-EEGNTLKMECSCKGALRLVHEECAIRWFSTK--------GNKNCEVCGKEVQNLP 256 (288)
Q Consensus 195 ~~ee~~~CRICle~~-e~g~~Li~PC~CkGsl~~vH~~CL~kWL~~k--------g~~~CEICK~ey~~vp 256 (288)
..+.+++|-||+.+- ...-.+.+-|. |.||..|..+-|..+ +...|+||+..+..+-
T Consensus 3482 kQD~DDmCmICFTE~L~AAP~IqL~C~-----HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH~~ 3547 (3738)
T KOG1428|consen 3482 KQDADDMCMICFTEALSAAPAIQLDCS-----HIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINHIV 3547 (3738)
T ss_pred hcccCceEEEEehhhhCCCcceecCCc-----cchhHHHHHHHHHhcccCCeeEEeeeecccccchhhhHH
Confidence 346778999999764 22233456666 799999997655443 4568999999987543
No 67
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=83.18 E-value=1.1 Score=42.54 Aligned_cols=51 Identities=24% Similarity=0.573 Sum_probs=42.4
Q ss_pred CCCCeeeEecccCCCCCeeeccCccCCCcceecHHHHHHHHHhc------CCCcccCCCccc
Q 023042 197 EEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTK------GNKNCEVCGKEV 252 (288)
Q Consensus 197 ee~~~CRICle~~e~g~~Li~PC~CkGsl~~vH~~CL~kWL~~k------g~~~CEICK~ey 252 (288)
+-..-|+.|-....+|+...+-|- +++|-+||..|...- ....|+-|..++
T Consensus 48 DY~pNC~LC~t~La~gdt~RLvCy-----hlfHW~ClneraA~lPanTAPaGyqCP~Cs~ei 104 (299)
T KOG3970|consen 48 DYNPNCRLCNTPLASGDTTRLVCY-----HLFHWKCLNERAANLPANTAPAGYQCPCCSQEI 104 (299)
T ss_pred CCCCCCceeCCccccCcceeehhh-----hhHHHHHhhHHHhhCCCcCCCCcccCCCCCCcc
Confidence 456779999988888888889996 799999999998642 247899999985
No 68
>PLN02400 cellulose synthase
Probab=81.27 E-value=1.1 Score=50.02 Aligned_cols=51 Identities=25% Similarity=0.564 Sum_probs=35.3
Q ss_pred CCCeeeEecccC---CCCCeee--ccCccCCCcceecHHHHHHHHHhcCCCcccCCCccccc
Q 023042 198 EEAVCRICLDIC---EEGNTLK--MECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (288)
Q Consensus 198 e~~~CRICle~~---e~g~~Li--~PC~CkGsl~~vH~~CL~kWL~~kg~~~CEICK~ey~~ 254 (288)
...+|.||-++- .+|+.++ ..|. --|=+.|.+ .=..-|+..|+.||++|+-
T Consensus 35 ~gqiCqICGD~VG~t~dGe~FVAC~eCa-----FPVCRpCYE-YERkeGnq~CPQCkTrYkR 90 (1085)
T PLN02400 35 NGQICQICGDDVGVTETGDVFVACNECA-----FPVCRPCYE-YERKDGTQCCPQCKTRYRR 90 (1085)
T ss_pred CCceeeecccccCcCCCCCEEEEEccCC-----Cccccchhh-eecccCCccCcccCCcccc
Confidence 556999998773 4567765 5563 125567863 2333478999999999993
No 69
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=76.97 E-value=1.1 Score=47.96 Aligned_cols=59 Identities=24% Similarity=0.397 Sum_probs=40.1
Q ss_pred CCCCeeeEecccCCCCCe---eeccCccCCCcceecHHHHHHHH---Hh-----cCCCcccCCCcccccc
Q 023042 197 EEEAVCRICLDICEEGNT---LKMECSCKGALRLVHEECAIRWF---ST-----KGNKNCEVCGKEVQNL 255 (288)
Q Consensus 197 ee~~~CRICle~~e~g~~---Li~PC~CkGsl~~vH~~CL~kWL---~~-----kg~~~CEICK~ey~~v 255 (288)
-..+.|.||.|...+.+. -.|-|+=.|--+-||..|.+.-= .+ .+.++|--|+|.|..+
T Consensus 115 RfnKtCYIC~E~GrpnkA~~GACMtCNKs~CkqaFHVTCAQ~~GLLCEE~gn~~dNVKYCGYCk~HfsKl 184 (900)
T KOG0956|consen 115 RFNKTCYICNEEGRPNKAAKGACMTCNKSGCKQAFHVTCAQRAGLLCEEEGNISDNVKYCGYCKYHFSKL 184 (900)
T ss_pred hhcceeeeecccCCccccccccceecccccchhhhhhhHhhhhccceeccccccccceechhHHHHHHHh
Confidence 356899999877543222 25777755555789999987641 11 1357999999999754
No 70
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=76.23 E-value=0.75 Score=46.53 Aligned_cols=49 Identities=24% Similarity=0.600 Sum_probs=39.1
Q ss_pred CCCCeeeEecccCC--CCCeeeccCccCCCcceecHHHHHHHHHhcCCCcccCCCc
Q 023042 197 EEEAVCRICLDICE--EGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGK 250 (288)
Q Consensus 197 ee~~~CRICle~~e--~g~~Li~PC~CkGsl~~vH~~CL~kWL~~kg~~~CEICK~ 250 (288)
+-+-.|-.|-+... +++.--+||. |.+|..||...|...+...||-|+.
T Consensus 363 e~~L~Cg~CGe~~Glk~e~LqALpCs-----HIfH~rCl~e~L~~n~~rsCP~Crk 413 (518)
T KOG1941|consen 363 ETELYCGLCGESIGLKNERLQALPCS-----HIFHLRCLQEILENNGTRSCPNCRK 413 (518)
T ss_pred HHhhhhhhhhhhhcCCcccccccchh-----HHHHHHHHHHHHHhCCCCCCccHHH
Confidence 45678999976642 2233368998 7999999999999889999999993
No 71
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=76.05 E-value=1.6 Score=44.76 Aligned_cols=54 Identities=24% Similarity=0.613 Sum_probs=41.2
Q ss_pred CCCCcccccCCCCeeeEecccCCCCCeeeccCccCCCcceecHHHHHHHHHhcCCCcccCCCccccc
Q 023042 188 MENNDEEIAEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (288)
Q Consensus 188 ~e~~~ee~~ee~~~CRICle~~e~g~~Li~PC~CkGsl~~vH~~CL~kWL~~kg~~~CEICK~ey~~ 254 (288)
.++..+++.+....|+||+... ..-+.+|. |..|+.+|+..+ ..|++|+.....
T Consensus 468 s~~~~~~l~~~~~~~~~~~~~~---~~~~~~~~--------~~~~l~~~~~~~--~~~pl~~~~~~~ 521 (543)
T KOG0802|consen 468 SEATPSQLREPNDVCAICYQEM---SARITPCS--------HALCLRKWLYVQ--EVCPLCHTYMKE 521 (543)
T ss_pred CCCChhhhhcccCcchHHHHHH---Hhcccccc--------chhHHHhhhhhc--cccCCCchhhhc
Confidence 3456777888899999999865 12245654 999999999885 489999877653
No 72
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=75.80 E-value=1.2 Score=42.08 Aligned_cols=53 Identities=25% Similarity=0.409 Sum_probs=32.7
Q ss_pred CCCCeeeEecccCCCCCeeeccCccCCCc-ceecHHHHHHHHHhcCCCcccCCCcccc
Q 023042 197 EEEAVCRICLDICEEGNTLKMECSCKGAL-RLVHEECAIRWFSTKGNKNCEVCGKEVQ 253 (288)
Q Consensus 197 ee~~~CRICle~~e~g~~Li~PC~CkGsl-~~vH~~CL~kWL~~kg~~~CEICK~ey~ 253 (288)
++...| ||. ......++ -|.|.+-- .|||..|+--=..-+|.++|+-|+..-.
T Consensus 217 ~e~~yC-~Cn--qvsyg~Mi-~CDn~~C~~eWFH~~CVGL~~~PkgkWyC~~C~~~~~ 270 (274)
T KOG1973|consen 217 DEPTYC-ICN--QVSYGKMI-GCDNPGCPIEWFHFTCVGLKTKPKGKWYCPRCKAENK 270 (274)
T ss_pred CCCEEE-Eec--cccccccc-ccCCCCCCcceEEEeccccccCCCCcccchhhhhhhh
Confidence 344444 454 32223344 46665544 8999999654344468899999997643
No 73
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=74.67 E-value=2 Score=30.05 Aligned_cols=22 Identities=27% Similarity=0.890 Sum_probs=16.0
Q ss_pred eecHHHHHHHHHhcCCCcccCC
Q 023042 227 LVHEECAIRWFSTKGNKNCEVC 248 (288)
Q Consensus 227 ~vH~~CL~kWL~~kg~~~CEIC 248 (288)
-+|..|+..++.......||.|
T Consensus 22 r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 22 RLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp EE-HHHHHHHTTT-SS-B-TTT
T ss_pred hHHHHHHHHHHhcCCCCCCcCC
Confidence 4899999999998876789987
No 74
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=74.54 E-value=1.8 Score=41.44 Aligned_cols=30 Identities=33% Similarity=0.530 Sum_probs=20.4
Q ss_pred ccCCCcceecHHHHHHHHHhcCCCcccCCCcc
Q 023042 220 SCKGALRLVHEECAIRWFSTKGNKNCEVCGKE 251 (288)
Q Consensus 220 ~CkGsl~~vH~~CL~kWL~~kg~~~CEICK~e 251 (288)
+|+- -|||..|+--=---+|.|+|+-||..
T Consensus 241 nCkr--EWFH~~CVGLk~pPKG~WYC~eCk~~ 270 (271)
T COG5034 241 NCKR--EWFHLECVGLKEPPKGKWYCPECKKA 270 (271)
T ss_pred CCch--hheeccccccCCCCCCcEeCHHhHhc
Confidence 5665 48899985422223689999999864
No 75
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=73.40 E-value=2.6 Score=46.91 Aligned_cols=51 Identities=25% Similarity=0.604 Sum_probs=36.2
Q ss_pred CCCCeeeEecccC---CCCCeee--ccCccCCCcceecHHHHHHHHHhcCCCcccCCCcccc
Q 023042 197 EEEAVCRICLDIC---EEGNTLK--MECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQ 253 (288)
Q Consensus 197 ee~~~CRICle~~---e~g~~Li--~PC~CkGsl~~vH~~CL~kWL~~kg~~~CEICK~ey~ 253 (288)
-...+|.||-++. .+|+.++ ..|. --|-+.|.+ .=..-|+..|+.||++|.
T Consensus 13 ~~~~~c~iCGd~vg~~~~Ge~FVAC~eC~-----fpvCr~cye-ye~~~g~~~cp~c~t~y~ 68 (1044)
T PLN02915 13 ADAKTCRVCGDEVGVKEDGQPFVACHVCG-----FPVCKPCYE-YERSEGNQCCPQCNTRYK 68 (1044)
T ss_pred CCcchhhccccccCcCCCCCEEEEeccCC-----Cccccchhh-hhhhcCCccCCccCCchh
Confidence 3568999998774 3567765 4563 125668983 334457899999999999
No 76
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=70.67 E-value=1.9 Score=45.19 Aligned_cols=54 Identities=20% Similarity=0.482 Sum_probs=41.1
Q ss_pred ccccCCCCeeeEecccCCCCCeeeccCccCCCcceecHHHHHHHHHhc---CCCcccCCCcccc
Q 023042 193 EEIAEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTK---GNKNCEVCGKEVQ 253 (288)
Q Consensus 193 ee~~ee~~~CRICle~~e~g~~Li~PC~CkGsl~~vH~~CL~kWL~~k---g~~~CEICK~ey~ 253 (288)
.+...++.+|-+|++..+ +.+..-|. |.|-+.|+..++..- .+.+||+|.-.+.
T Consensus 530 ~~enk~~~~C~lc~d~ae--d~i~s~Ch-----H~FCrlCi~eyv~~f~~~~nvtCP~C~i~Ls 586 (791)
T KOG1002|consen 530 PDENKGEVECGLCHDPAE--DYIESSCH-----HKFCRLCIKEYVESFMENNNVTCPVCHIGLS 586 (791)
T ss_pred CccccCceeecccCChhh--hhHhhhhh-----HHHHHHHHHHHHHhhhcccCCCCcccccccc
Confidence 334467889999998754 46778887 568889999998653 4689999987654
No 77
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=69.24 E-value=4.1 Score=40.41 Aligned_cols=36 Identities=28% Similarity=0.768 Sum_probs=27.1
Q ss_pred ccCccCCCcceecHHHHHHHHHhc-----------CCCcccCCCcccccc
Q 023042 217 MECSCKGALRLVHEECAIRWFSTK-----------GNKNCEVCGKEVQNL 255 (288)
Q Consensus 217 ~PC~CkGsl~~vH~~CL~kWL~~k-----------g~~~CEICK~ey~~v 255 (288)
.+|.|+- .-=.+||-+||..+ ++..||.|+..|=.+
T Consensus 307 ~~C~CRP---mWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCil 353 (358)
T PF10272_consen 307 QQCYCRP---MWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCIL 353 (358)
T ss_pred ccccccc---hHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccceee
Confidence 4677763 34569999999875 367999999998654
No 78
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=68.23 E-value=3.5 Score=36.07 Aligned_cols=56 Identities=20% Similarity=0.350 Sum_probs=39.5
Q ss_pred CCCeeeEecccCCCCCeeeccCccCCCcceecHHHHHHHHHhcCCCcccCCCcccccc
Q 023042 198 EEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQNL 255 (288)
Q Consensus 198 e~~~CRICle~~e~g~~Li~PC~CkGsl~~vH~~CL~kWL~~kg~~~CEICK~ey~~v 255 (288)
.--+|-||.+...+ +.+..|=.|-|. ..--.-|..-|-...-...||+||+-|+..
T Consensus 79 ~lYeCnIC~etS~e-e~FLKPneCCgY-~iCn~Cya~LWK~~~~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 79 KLYECNICKETSAE-ERFLKPNECCGY-SICNACYANLWKFCNLYPVCPVCKTSFKSS 134 (140)
T ss_pred CceeccCcccccch-hhcCCcccccch-HHHHHHHHHHHHHcccCCCCCccccccccc
Confidence 55789999877544 456667555553 334445677888777778999999998753
No 79
>PF04641 Rtf2: Rtf2 RING-finger
Probab=67.40 E-value=6.1 Score=36.80 Aligned_cols=54 Identities=20% Similarity=0.409 Sum_probs=39.1
Q ss_pred ccCCCCeeeEecccCCCCCee--eccCccCCCcceecHHHHHHHHHhcCCCcccCCCccccccc
Q 023042 195 IAEEEAVCRICLDICEEGNTL--KMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQNLP 256 (288)
Q Consensus 195 ~~ee~~~CRICle~~e~g~~L--i~PC~CkGsl~~vH~~CL~kWL~~kg~~~CEICK~ey~~vp 256 (288)
..+...+|.|...+....-.+ +.||.| .|-+.+|.+-- ....|++|...|...-
T Consensus 109 ~~~~~~~CPvt~~~~~~~~~fv~l~~cG~-----V~s~~alke~k---~~~~Cp~c~~~f~~~D 164 (260)
T PF04641_consen 109 NSEGRFICPVTGKEFNGKHKFVYLRPCGC-----VFSEKALKELK---KSKKCPVCGKPFTEED 164 (260)
T ss_pred cCCceeECCCCCcccCCceeEEEEcCCCC-----EeeHHHHHhhc---ccccccccCCccccCC
Confidence 345667888887776433333 679997 78889988872 3467999999998543
No 80
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=63.51 E-value=5.9 Score=36.55 Aligned_cols=57 Identities=19% Similarity=0.478 Sum_probs=33.4
Q ss_pred CCCCeeeEecccCCCCCeeeccCccCCCcceecHHHHHHHHHhc----C-----CCcccCCCcccc
Q 023042 197 EEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTK----G-----NKNCEVCGKEVQ 253 (288)
Q Consensus 197 ee~~~CRICle~~e~g~~Li~PC~CkGsl~~vH~~CL~kWL~~k----g-----~~~CEICK~ey~ 253 (288)
++...|-||+.-.-+|..--.-|.-..--+-+|+-||-.||+.- . ...|+-|..++.
T Consensus 163 d~~~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pia 228 (234)
T KOG3268|consen 163 DELGACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIA 228 (234)
T ss_pred hhhhcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcce
Confidence 45667888885432222111122211112679999999999742 1 247999987654
No 81
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=61.65 E-value=2.9 Score=46.62 Aligned_cols=55 Identities=35% Similarity=0.558 Sum_probs=34.0
Q ss_pred ccCCCCeeeEecccCCCCCeeeccCccCCCcceecHHHHHHHHHhcCCCcccCCCcc
Q 023042 195 IAEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKE 251 (288)
Q Consensus 195 ~~ee~~~CRICle~~e~g~~Li~PC~CkGsl~~vH~~CL~kWL~~kg~~~CEICK~e 251 (288)
..++..+|-||++.+-+....+.-|. |---+||++|.-.=+..-|.+.|--|-+-
T Consensus 215 ~~~~D~~C~iC~~~~~~n~n~ivfCD--~Cnl~VHq~Cygi~~ipeg~WlCr~Cl~s 269 (1051)
T KOG0955|consen 215 LLEEDAVCCICLDGECQNSNVIVFCD--GCNLAVHQECYGIPFIPEGQWLCRRCLQS 269 (1051)
T ss_pred ccCCCccceeecccccCCCceEEEcC--CCcchhhhhccCCCCCCCCcEeehhhccC
Confidence 33678999999987644223344443 22268999998722222356777777654
No 82
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=61.49 E-value=3.9 Score=31.10 Aligned_cols=49 Identities=16% Similarity=0.487 Sum_probs=29.7
Q ss_pred CeeeEecccCCCCCeeeccCccCCCcceecHHHHHHHHHhcCCCcccCCCcccccc
Q 023042 200 AVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQNL 255 (288)
Q Consensus 200 ~~CRICle~~e~g~~Li~PC~CkGsl~~vH~~CL~kWL~~kg~~~CEICK~ey~~v 255 (288)
+.|-||++.--+ .++--|... -.-.+|-.+..+. ....||||+.+++-+
T Consensus 8 dECTICye~pvd--sVlYtCGHM----CmCy~Cg~rl~~~-~~g~CPiCRapi~dv 56 (62)
T KOG4172|consen 8 DECTICYEHPVD--SVLYTCGHM----CMCYACGLRLKKA-LHGCCPICRAPIKDV 56 (62)
T ss_pred cceeeeccCcch--HHHHHcchH----HhHHHHHHHHHHc-cCCcCcchhhHHHHH
Confidence 789999986432 233345411 1234776554443 456999999987644
No 83
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=58.34 E-value=5.7 Score=38.92 Aligned_cols=48 Identities=19% Similarity=0.468 Sum_probs=31.2
Q ss_pred CCCeeeEecccCCCCCeeeccCccCCCcceecHHHHHHHHHhcCCCcccCCCcccc
Q 023042 198 EEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQ 253 (288)
Q Consensus 198 e~~~CRICle~~e~g~~Li~PC~CkGsl~~vH~~CL~kWL~~kg~~~CEICK~ey~ 253 (288)
-.+.|-||+.... -+..++|. |.+-+.||+-=... +...|.+|++++.
T Consensus 6 ~~~eC~IC~nt~n--~Pv~l~C~-----HkFCyiCiKGsy~n-dk~~CavCR~pid 53 (324)
T KOG0824|consen 6 KKKECLICYNTGN--CPVNLYCF-----HKFCYICIKGSYKN-DKKTCAVCRFPID 53 (324)
T ss_pred cCCcceeeeccCC--cCcccccc-----chhhhhhhcchhhc-CCCCCceecCCCC
Confidence 3568999997643 25678887 34455665432221 3457999999975
No 84
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=58.11 E-value=4.9 Score=41.25 Aligned_cols=56 Identities=20% Similarity=0.466 Sum_probs=41.1
Q ss_pred CCeeeEecccC-CCCCeeeccCccCCCcceecHHHHHHHHHhc------CCCcccCCCcccccccc
Q 023042 199 EAVCRICLDIC-EEGNTLKMECSCKGALRLVHEECAIRWFSTK------GNKNCEVCGKEVQNLPV 257 (288)
Q Consensus 199 ~~~CRICle~~-e~g~~Li~PC~CkGsl~~vH~~CL~kWL~~k------g~~~CEICK~ey~~vpv 257 (288)
..+|-+|++.. -.+|.++-=|.|+ .+||+.|-+-.+... ..+.|.+|...-..++.
T Consensus 168 n~qc~vC~~g~~~~~NrmlqC~~C~---~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~~~~~~~r 230 (464)
T KOG4323|consen 168 NLQCSVCYCGGPGAGNRMLQCDKCR---QWYHQACHQPLIKDELAGDPFYEWFCDVCNRGPKKVPR 230 (464)
T ss_pred cceeeeeecCCcCccceeeeecccc---cHHHHHhccCCCCHhhccCccceEeehhhccchhhccc
Confidence 34599999765 3457777667786 699999977665432 36899999998776663
No 85
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=55.94 E-value=5.7 Score=38.23 Aligned_cols=42 Identities=21% Similarity=0.580 Sum_probs=32.8
Q ss_pred eeEecccCCCC--CeeeccCccCCCcceecHHHHHHHHHhcCCCcccCCCc
Q 023042 202 CRICLDICEEG--NTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGK 250 (288)
Q Consensus 202 CRICle~~e~g--~~Li~PC~CkGsl~~vH~~CL~kWL~~kg~~~CEICK~ 250 (288)
|-||.+....+ .+-+++|. ++.|..|+..-.... ..||+|+.
T Consensus 161 cPic~e~l~~s~~~~~~~~Cg-----H~~h~~cf~e~~~~~--y~CP~C~~ 204 (276)
T KOG1940|consen 161 CPICKEYLFLSFEDAGVLKCG-----HYMHSRCFEEMICEG--YTCPICSK 204 (276)
T ss_pred CchhHHHhccccccCCccCcc-----cchHHHHHHHHhccC--CCCCcccc
Confidence 88998775433 34478898 799999888877653 89999999
No 86
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=51.76 E-value=6.7 Score=41.90 Aligned_cols=32 Identities=31% Similarity=0.736 Sum_probs=24.3
Q ss_pred eccCccCCCcceecHHHHHHHHHhc---------CCCcccCCC
Q 023042 216 KMECSCKGALRLVHEECAIRWFSTK---------GNKNCEVCG 249 (288)
Q Consensus 216 i~PC~CkGsl~~vH~~CL~kWL~~k---------g~~~CEICK 249 (288)
.+-|.|.| +++|..|+.-|+.+. ....||.|+
T Consensus 35 m~ac~~c~--~~yH~~cvt~~~~~~~l~~gWrC~~crvCe~c~ 75 (694)
T KOG4443|consen 35 LLACSDCG--QKYHPYCVTSWAQHAVLSGGWRCPSCRVCEACG 75 (694)
T ss_pred chhhhhhc--ccCCcchhhHHHhHHHhcCCcccCCceeeeecc
Confidence 45588777 588999999999875 145677777
No 87
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=51.20 E-value=8.6 Score=38.81 Aligned_cols=49 Identities=24% Similarity=0.464 Sum_probs=36.6
Q ss_pred CCCCeeeEecccCCCCCeeeccCccCCCcceecHHHHHHHHHhcCCCcccCCCccccc
Q 023042 197 EEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (288)
Q Consensus 197 ee~~~CRICle~~e~g~~Li~PC~CkGsl~~vH~~CL~kWL~~kg~~~CEICK~ey~~ 254 (288)
.|+..|-||+... -+.+..||..+ --..|+.+-+.. .+.|=.||..+..
T Consensus 420 sEd~lCpICyA~p--i~Avf~PC~H~-----SC~~CI~qHlmN--~k~CFfCktTv~~ 468 (489)
T KOG4692|consen 420 SEDNLCPICYAGP--INAVFAPCSHR-----SCYGCITQHLMN--CKRCFFCKTTVID 468 (489)
T ss_pred cccccCcceeccc--chhhccCCCCc-----hHHHHHHHHHhc--CCeeeEecceeee
Confidence 4678999998763 35678999833 345788887765 4689999998774
No 88
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=50.13 E-value=6.6 Score=38.71 Aligned_cols=52 Identities=19% Similarity=0.494 Sum_probs=38.4
Q ss_pred CCCCeeeEecccCCCCCeeeccCccCCCcceecHHHHHHHHHhcCCCcccCCCccccccc
Q 023042 197 EEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQNLP 256 (288)
Q Consensus 197 ee~~~CRICle~~e~g~~Li~PC~CkGsl~~vH~~CL~kWL~~kg~~~CEICK~ey~~vp 256 (288)
....+|++|-.-.- +-..+..|-| -|=..||.+.|.. +.+|+.|+..+....
T Consensus 13 n~~itC~LC~GYli-DATTI~eCLH-----TFCkSCivk~l~~--~~~CP~C~i~ih~t~ 64 (331)
T KOG2660|consen 13 NPHITCRLCGGYLI-DATTITECLH-----TFCKSCIVKYLEE--SKYCPTCDIVIHKTH 64 (331)
T ss_pred ccceehhhccceee-cchhHHHHHH-----HHHHHHHHHHHHH--hccCCccceeccCcc
Confidence 45678999954333 2345778864 5778999999988 679999998876543
No 89
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=47.04 E-value=8.1 Score=42.42 Aligned_cols=50 Identities=26% Similarity=0.424 Sum_probs=33.3
Q ss_pred ccCCCCeeeEecccCCCCCeee--ccCccCCCcceecHHHHHHHHHhc--CCCcccCCC
Q 023042 195 IAEEEAVCRICLDICEEGNTLK--MECSCKGALRLVHEECAIRWFSTK--GNKNCEVCG 249 (288)
Q Consensus 195 ~~ee~~~CRICle~~e~g~~Li--~PC~CkGsl~~vH~~CL~kWL~~k--g~~~CEICK 249 (288)
..++..-|-||.-.+-+ +.|+ .-|+ ..|+|.+||+-=+... +.++|.-|-
T Consensus 211 ~~~E~~~C~IC~~~DpE-dVLLLCDsCN----~~~YH~YCLDPdl~eiP~~eWYC~NC~ 264 (1134)
T KOG0825|consen 211 LSQEEVKCDICTVHDPE-DVLLLCDSCN----KVYYHVYCLDPDLSESPVNEWYCTNCS 264 (1134)
T ss_pred cccccccceeeccCChH-Hhheeecccc----cceeeccccCcccccccccceecCcch
Confidence 34677889999755422 3333 3344 3579999999866432 568999995
No 90
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=46.99 E-value=9 Score=36.94 Aligned_cols=55 Identities=20% Similarity=0.349 Sum_probs=38.4
Q ss_pred CCeeeEecccCCCCCeeeccCccCCCcceecHHHHHHHHHhc--C-----CCcccCCCcccc
Q 023042 199 EAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTK--G-----NKNCEVCGKEVQ 253 (288)
Q Consensus 199 ~~~CRICle~~e~g~~Li~PC~CkGsl~~vH~~CL~kWL~~k--g-----~~~CEICK~ey~ 253 (288)
...|.||.++.++.+..+.-|.-.+-....|..||..-+..- + ...|+.|+..+.
T Consensus 182 ~~~celc~~ei~e~~~~~a~c~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~~~~ 243 (276)
T KOG3005|consen 182 NVECELCEKEILETDWSRATCPNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEKFLS 243 (276)
T ss_pred chhhHHHHHHhccccceeccCCCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhceee
Confidence 368999988875445566666655555689999999844321 2 368999998653
No 91
>PF06937 EURL: EURL protein; InterPro: IPR009704 This family consists of several animal EURL proteins. EURL is preferentially expressed in chick retinal precursor cells as well as in the anterior epithelial cells of the lens at early stages of development. EURL transcripts are found primarily in the peripheral dorsal retina, i.e., the most undifferentiated part of the dorsal retina. EURL transcripts are also detected in the lens at stage 18 and remain abundant in the proliferating epithelial cells of the lens until at least day 11. The distribution pattern of EURL in the developing retina and lens suggest a role before the events leading to cell determination and differentiation [].
Probab=46.99 E-value=21 Score=34.61 Aligned_cols=57 Identities=25% Similarity=0.517 Sum_probs=31.1
Q ss_pred CCCCCCccCC-CCCCCcccccCCCCeeeEecccCCCCCee-eccCccCCCcceecHHHHHHHHHhc
Q 023042 177 DTSDDQIVPA-PMENNDEEIAEEEAVCRICLDICEEGNTL-KMECSCKGALRLVHEECAIRWFSTK 240 (288)
Q Consensus 177 ~~~~d~i~~~-~~e~~~ee~~ee~~~CRICle~~e~g~~L-i~PC~CkGsl~~vH~~CL~kWL~~k 240 (288)
+-+||+|-.+ ..+.+ -+.-..|.||++-.-+|-+- .++ ..-+++ =|++|+++|-.+.
T Consensus 11 DLnddniCsVCkl~Td----~~tLsfChiCfEl~iegvpks~ll--HtkSlR-GHrdCFEK~HlIa 69 (285)
T PF06937_consen 11 DLNDDNICSVCKLGTD----TETLSFCHICFELSIEGVPKSNLL--HTKSLR-GHRDCFEKYHLIA 69 (285)
T ss_pred ccCCCceeeeeeeccc----ccceeecceeeccccccCcccccc--cccccc-chHHHHHHHHHHH
Confidence 4455555444 23222 24567899999875443211 011 112222 3999999998765
No 92
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PF01440 Gemini_AL2: Geminivirus AL2 protein; InterPro: IPR000942 Geminiviruses are characterised by a genome of circular single-stranded DNA encapsidated in twinned (geminate) quasi-isometric particles, from which the group derives its name []. Most geminiviruses can be divided into two subgroups on the basis of host range and/or insect vector: i.e. those that infect dicotyledenous plants and are transmitted by the same whitefly species, and those that infect monocotyledenous plants and are transmitted by different leafhopper vectors. The genomes of the whitefly-transmitted African cassava mosaic virus, Tomato golden mosaic virus (TGMV) and Bean golden mosaic virus (BGMV) possess a bipartite genome. By contrast, only a single DNA component has been identified for the leafhopper-transmitted Maize streak virus (MSV) and Wheat dwarf virus (WDV) [, ]. Beet curly top virus (BCTV), and Tobacco yellow dwarf virus belong to a third possible subgroup. Like MSV and WDV, BCTV is transmitted by a specific leafhopper species, yet like the whitefly-transmitted geminiviruses it has a host range confined to dicotyledenous plants. Sequence comparison of the whitefly-transmitted Squash leaf curl virus (SqLCV) and Tomato yellow leaf curl virus (TYLCV) with the genomic components of TGMV and BGMV reveals a close evolutionary relationship [, , ]. Amino acid sequence alignments of Potato yellow mosaic virus (PYMV) proteins with those encoded by other geminiviruses show that PYMV is closely related to geminiviruses isolated from the New World, especially in the putative coat protein gene regions []. Comparison of MSV DNA-encoded proteins with those of other geminiviruses infecting monocotyledonous plants, including Panicum streak virus [] and Miscanthus streak virus (MiSV) [], reveal high levels of similarity.; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=43.40 E-value=4.6 Score=35.11 Aligned_cols=34 Identities=21% Similarity=0.683 Sum_probs=27.7
Q ss_pred eeeccCccCCCcceecHHHHHHHHHhcCCCcccCCCc
Q 023042 214 TLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGK 250 (288)
Q Consensus 214 ~Li~PC~CkGsl~~vH~~CL~kWL~~kg~~~CEICK~ 250 (288)
.+-++|.|. .|+|.+|-..+|.+.|+..|--.+.
T Consensus 32 RIDL~CGCS---yyihinC~~hGFTHRGthhCsS~~E 65 (134)
T PF01440_consen 32 RIDLPCGCS---YYIHINCHNHGFTHRGTHHCSSSRE 65 (134)
T ss_pred ccccCCCCE---EEeecccCCCCcCCCcCccCCCcCc
Confidence 456899996 7899999999999998877765443
No 94
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=43.08 E-value=14 Score=37.15 Aligned_cols=49 Identities=20% Similarity=0.428 Sum_probs=36.1
Q ss_pred CCCCeeeEecccCCCCCeeeccCccCCCcceecHHHHHHHHHhcCCCcccCCCccccc
Q 023042 197 EEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (288)
Q Consensus 197 ee~~~CRICle~~e~g~~Li~PC~CkGsl~~vH~~CL~kWL~~kg~~~CEICK~ey~~ 254 (288)
-.+-.|-||+.-.. ++..+||.. -+=..||++=+. ....|++|+.+|.-
T Consensus 82 ~sef~c~vc~~~l~--~pv~tpcgh-----s~c~~Cl~r~ld--~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 82 RSEFECCVCSRALY--PPVVTPCGH-----SFCLECLDRSLD--QETECPLCRDELVE 130 (398)
T ss_pred cchhhhhhhHhhcC--CCccccccc-----cccHHHHHHHhc--cCCCCccccccccc
Confidence 67788999976653 467789984 344558888444 46799999999885
No 95
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=41.87 E-value=1.9 Score=42.13 Aligned_cols=43 Identities=21% Similarity=0.631 Sum_probs=27.7
Q ss_pred CCeeeEecccCCCCCeeeccCccCCCcceecHHHHHHHHHhcCCCcccCCCcccc
Q 023042 199 EAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQ 253 (288)
Q Consensus 199 ~~~CRICle~~e~g~~Li~PC~CkGsl~~vH~~CL~kWL~~kg~~~CEICK~ey~ 253 (288)
...|+||++.- -+=+.++|... ..-.+|=. .-..||||++-+.
T Consensus 300 ~~LC~ICmDaP--~DCvfLeCGHm----VtCt~CGk------rm~eCPICRqyi~ 342 (350)
T KOG4275|consen 300 RRLCAICMDAP--RDCVFLECGHM----VTCTKCGK------RMNECPICRQYIV 342 (350)
T ss_pred HHHHHHHhcCC--cceEEeecCcE----Eeehhhcc------ccccCchHHHHHH
Confidence 78999999863 24578899842 22234421 1248999998765
No 96
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=39.48 E-value=21 Score=26.82 Aligned_cols=46 Identities=20% Similarity=0.447 Sum_probs=29.4
Q ss_pred CCCeeeEecccCCCCCeeeccCccCCCcceecHHHHHHHHHhcCCCcccCCCccccc
Q 023042 198 EEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (288)
Q Consensus 198 e~~~CRICle~~e~g~~Li~PC~CkGsl~~vH~~CL~kWL~~kg~~~CEICK~ey~~ 254 (288)
.+..|..|..... ...++||. |+|=..|..-|- -+-|++|+.+|..
T Consensus 6 ~~~~~~~~~~~~~--~~~~~pCg-----H~I~~~~f~~~r----YngCPfC~~~~~~ 51 (55)
T PF14447_consen 6 PEQPCVFCGFVGT--KGTVLPCG-----HLICDNCFPGER----YNGCPFCGTPFEF 51 (55)
T ss_pred cceeEEEcccccc--cccccccc-----ceeeccccChhh----ccCCCCCCCcccC
Confidence 4456777765433 24589998 456555544333 3469999998763
No 97
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.40 E-value=17 Score=35.87 Aligned_cols=37 Identities=27% Similarity=0.609 Sum_probs=27.2
Q ss_pred CccCCCcceecHHHHHHHHHhc-----------CCCcccCCCcccccccce
Q 023042 219 CSCKGALRLVHEECAIRWFSTK-----------GNKNCEVCGKEVQNLPVT 258 (288)
Q Consensus 219 C~CkGsl~~vH~~CL~kWL~~k-----------g~~~CEICK~ey~~vpv~ 258 (288)
|-|+- .--.+||.+|+..+ |+.+|+.|+..|-..-|.
T Consensus 323 c~crp---~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~dv~ 370 (381)
T KOG3899|consen 323 CICRP---LWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIRDVH 370 (381)
T ss_pred ccccc---HHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEeeee
Confidence 45653 45679999999654 578999999988765443
No 98
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=38.50 E-value=19 Score=26.59 Aligned_cols=43 Identities=26% Similarity=0.564 Sum_probs=28.2
Q ss_pred CCCeeeEecccCCCCCeeec-cCccCCCcceecHHHHHHHHHhcCCCcccC
Q 023042 198 EEAVCRICLDICEEGNTLKM-ECSCKGALRLVHEECAIRWFSTKGNKNCEV 247 (288)
Q Consensus 198 e~~~CRICle~~e~g~~Li~-PC~CkGsl~~vH~~CL~kWL~~kg~~~CEI 247 (288)
-...|-|.+.... ++++. -|. |.|-++.|.+||...+...||+
T Consensus 10 ~~~~CPiT~~~~~--~PV~s~~C~-----H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 10 ISLKCPITLQPFE--DPVKSKKCG-----HTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp --SB-TTTSSB-S--SEEEESSS-------EEEHHHHHHHCTTTS-EE-SC
T ss_pred eccCCCCcCChhh--CCcCcCCCC-----CeecHHHHHHHHHhcCCCCCCC
Confidence 4467888877654 57664 675 6899999999997777889999
No 99
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=36.25 E-value=19 Score=35.37 Aligned_cols=48 Identities=21% Similarity=0.509 Sum_probs=37.7
Q ss_pred CeeeEecccCCCCCeeeccCccCCCcceecHHHHHHHHHhcCCCcccCCCccccccc
Q 023042 200 AVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQNLP 256 (288)
Q Consensus 200 ~~CRICle~~e~g~~Li~PC~CkGsl~~vH~~CL~kWL~~kg~~~CEICK~ey~~vp 256 (288)
..|-||...+. ++++.-|. |||-..|..+=++. ...|-||.+....+.
T Consensus 242 f~c~icr~~f~--~pVvt~c~-----h~fc~~ca~~~~qk--~~~c~vC~~~t~g~~ 289 (313)
T KOG1813|consen 242 FKCFICRKYFY--RPVVTKCG-----HYFCEVCALKPYQK--GEKCYVCSQQTHGSF 289 (313)
T ss_pred ccccccccccc--cchhhcCC-----ceeehhhhcccccc--CCcceeccccccccc
Confidence 45999988764 46888887 69999998877755 468999999887554
No 100
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.74 E-value=34 Score=33.13 Aligned_cols=66 Identities=15% Similarity=0.253 Sum_probs=45.7
Q ss_pred CCCeeeEecccCCCCC--eeeccCccCCCcceecHHHHHHHHHhcCCCcccCCCccccccc-ceeeccCchhhhcc
Q 023042 198 EEAVCRICLDICEEGN--TLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQNLP-VTLLRMSSSAQRDN 270 (288)
Q Consensus 198 e~~~CRICle~~e~g~--~Li~PC~CkGsl~~vH~~CL~kWL~~kg~~~CEICK~ey~~vp-v~llr~~s~~~~~~ 270 (288)
...+|.||.+.....- ....||. +.|-.+|+++.+.. ...|+||.....--- +.|.|=..++...|
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg-----~Vv~~ecvEklir~--D~v~pv~d~plkdrdiI~LqrGGTGfa~tn 288 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSG-----HVVTKECVEKLIRK--DMVDPVTDKPLKDRDIIGLQRGGTGFAETN 288 (303)
T ss_pred cceecccchhhhcCccceEEeccCC-----cEeeHHHHHHhccc--cccccCCCCcCcccceEeeecccccccccc
Confidence 6689999998875432 2356776 68999999999976 469999999876432 34555444443333
No 101
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=35.45 E-value=25 Score=32.20 Aligned_cols=41 Identities=22% Similarity=0.491 Sum_probs=25.9
Q ss_pred CeeeEecccCCCCCeeeccCccCCCcceec-HHHHHHHHHhcCCCcccCCCcccc
Q 023042 200 AVCRICLDICEEGNTLKMECSCKGALRLVH-EECAIRWFSTKGNKNCEVCGKEVQ 253 (288)
Q Consensus 200 ~~CRICle~~e~g~~Li~PC~CkGsl~~vH-~~CL~kWL~~kg~~~CEICK~ey~ 253 (288)
..||+|.+.. ...+.+||+ |++| ..|-.. ...||+|+....
T Consensus 159 ~~Cr~C~~~~--~~VlllPCr-----Hl~lC~~C~~~------~~~CPiC~~~~~ 200 (207)
T KOG1100|consen 159 RSCRKCGERE--ATVLLLPCR-----HLCLCGICDES------LRICPICRSPKT 200 (207)
T ss_pred ccceecCcCC--ceEEeeccc-----ceEeccccccc------CccCCCCcChhh
Confidence 4499997653 347889998 3332 244221 457999997643
No 102
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=35.04 E-value=30 Score=34.47 Aligned_cols=58 Identities=16% Similarity=0.319 Sum_probs=43.7
Q ss_pred CCCCCcccccCCCCeeeEecccCCCCCeeeccCccCCCcceecHHHHHHHHHhcCCCcccCCCccc
Q 023042 187 PMENNDEEIAEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEV 252 (288)
Q Consensus 187 ~~e~~~ee~~ee~~~CRICle~~e~g~~Li~PC~CkGsl~~vH~~CL~kWL~~kg~~~CEICK~ey 252 (288)
++..+.+..+.....|.+|+.. ..+||.|.-+-..+-..|+.+.+..- ..|||=+++.
T Consensus 288 ~~~se~e~l~~~~~~CpvClk~------r~Nptvl~vSGyVfCY~Ci~~Yv~~~--~~CPVT~~p~ 345 (357)
T KOG0826|consen 288 QYNSESELLPPDREVCPVCLKK------RQNPTVLEVSGYVFCYPCIFSYVVNY--GHCPVTGYPA 345 (357)
T ss_pred hcccccccCCCccccChhHHhc------cCCCceEEecceEEeHHHHHHHHHhc--CCCCccCCcc
Confidence 4556777777888999999753 35788776554568899999999854 5899876653
No 103
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.77 E-value=19 Score=39.80 Aligned_cols=44 Identities=18% Similarity=0.486 Sum_probs=31.2
Q ss_pred CeeeEecccCCCCCeeec-cCccCCCcceecHHHHHHHHHhcCCCcccCCCcccccc
Q 023042 200 AVCRICLDICEEGNTLKM-ECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQNL 255 (288)
Q Consensus 200 ~~CRICle~~e~g~~Li~-PC~CkGsl~~vH~~CL~kWL~~kg~~~CEICK~ey~~v 255 (288)
..|-+|-...+ -+.+. -|. |.+|+.|+. .+...||-|+-++..+
T Consensus 841 skCs~C~~~Ld--lP~VhF~Cg-----HsyHqhC~e-----~~~~~CP~C~~e~~~~ 885 (933)
T KOG2114|consen 841 SKCSACEGTLD--LPFVHFLCG-----HSYHQHCLE-----DKEDKCPKCLPELRGV 885 (933)
T ss_pred eeecccCCccc--cceeeeecc-----cHHHHHhhc-----cCcccCCccchhhhhh
Confidence 48999954332 24443 265 789999988 4467899999988755
No 104
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=33.72 E-value=13 Score=25.53 Aligned_cols=44 Identities=25% Similarity=0.596 Sum_probs=25.6
Q ss_pred eeeEecccCCCCCeee-ccCccCCCcceecHHHHHHHHHh----cCCCcccCCC
Q 023042 201 VCRICLDICEEGNTLK-MECSCKGALRLVHEECAIRWFST----KGNKNCEVCG 249 (288)
Q Consensus 201 ~CRICle~~e~g~~Li-~PC~CkGsl~~vH~~CL~kWL~~----kg~~~CEICK 249 (288)
+|.||....+.++.+. .-|. .++|..|+.-=... .+.+.|+.|.
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~-----~~~H~~C~~~~~~~~~~~~~~w~C~~C~ 49 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCN-----RWYHQECVGPPEKAEEIPSGDWYCPNCR 49 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTS-----CEEETTTSTSSHSHHSHHSSSBSSHHHH
T ss_pred eCcCCCCcCCCCCeEEcCCCC-----hhhCcccCCCChhhccCCCCcEECcCCc
Confidence 4788877444333332 3343 69999997543321 2367777774
No 105
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=33.25 E-value=17 Score=39.20 Aligned_cols=48 Identities=21% Similarity=0.587 Sum_probs=37.3
Q ss_pred CCCeeeEecccCCCCCeeeccCccCCCcceecHHHHHHHHHhcCCCcccCCCcccc
Q 023042 198 EEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQ 253 (288)
Q Consensus 198 e~~~CRICle~~e~g~~Li~PC~CkGsl~~vH~~CL~kWL~~kg~~~CEICK~ey~ 253 (288)
+--.|-.|.+... +.++.-|. |.|=..|+..-+..+ .++||.|+..|.
T Consensus 642 ~~LkCs~Cn~R~K--d~vI~kC~-----H~FC~~Cvq~r~etR-qRKCP~Cn~aFg 689 (698)
T KOG0978|consen 642 ELLKCSVCNTRWK--DAVITKCG-----HVFCEECVQTRYETR-QRKCPKCNAAFG 689 (698)
T ss_pred hceeCCCccCchh--hHHHHhcc-----hHHHHHHHHHHHHHh-cCCCCCCCCCCC
Confidence 3467888875432 45677786 688899999999886 589999999886
No 106
>COG4847 Uncharacterized protein conserved in archaea [Function unknown]
Probab=33.25 E-value=38 Score=28.31 Aligned_cols=36 Identities=33% Similarity=0.451 Sum_probs=25.2
Q ss_pred CCeeeEecccCCCCCee-eccCccCCCcceecHHHHHHHHHhc
Q 023042 199 EAVCRICLDICEEGNTL-KMECSCKGALRLVHEECAIRWFSTK 240 (288)
Q Consensus 199 ~~~CRICle~~e~g~~L-i~PC~CkGsl~~vH~~CL~kWL~~k 240 (288)
+-.|.||-..--+|..+ ..+ +| -||.+||..=...+
T Consensus 6 ewkC~VCg~~iieGqkFTF~~---kG---sVH~eCl~~s~~~k 42 (103)
T COG4847 6 EWKCYVCGGTIIEGQKFTFTK---KG---SVHYECLAESKRKK 42 (103)
T ss_pred eeeEeeeCCEeeeccEEEEee---CC---cchHHHHHHHHhcC
Confidence 45699997766667665 344 56 48999998766544
No 107
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=31.56 E-value=30 Score=37.73 Aligned_cols=56 Identities=29% Similarity=0.536 Sum_probs=36.1
Q ss_pred CeeeEecccC-CCCCeeeccCccCCCcceecHHHH-------HHHHHhc-------CCCcccCCCccccccc
Q 023042 200 AVCRICLDIC-EEGNTLKMECSCKGALRLVHEECA-------IRWFSTK-------GNKNCEVCGKEVQNLP 256 (288)
Q Consensus 200 ~~CRICle~~-e~g~~Li~PC~CkGsl~~vH~~CL-------~kWL~~k-------g~~~CEICK~ey~~vp 256 (288)
--|-+|-|+- -.+|+|+ .|.=.+---.||+.|. -.||=.| -..+||+|-+.+-.+-
T Consensus 6 GGCCVCSDErGWaeNPLV-YCDG~nCsVAVHQaCYGIvqVPtGpWfCrKCesqeraarvrCeLCP~kdGALK 76 (900)
T KOG0956|consen 6 GGCCVCSDERGWAENPLV-YCDGHNCSVAVHQACYGIVQVPTGPWFCRKCESQERAARVRCELCPHKDGALK 76 (900)
T ss_pred cceeeecCcCCCccCcee-eecCCCceeeeehhcceeEecCCCchhhhhhhhhhhhccceeecccCccccee
Confidence 3588898763 2457776 2321111246999997 4688543 2479999999987654
No 108
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=31.29 E-value=25 Score=33.11 Aligned_cols=46 Identities=33% Similarity=0.684 Sum_probs=35.9
Q ss_pred CeeeEecccCCCCCeeeccCccCCCcceecHHHHHHHHHhcCCCcccCCCccccc
Q 023042 200 AVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (288)
Q Consensus 200 ~~CRICle~~e~g~~Li~PC~CkGsl~~vH~~CL~kWL~~kg~~~CEICK~ey~~ 254 (288)
..|-||...++ .+++..|. |+|-..|+.+=.+. ...|-+|+.....
T Consensus 197 F~C~iCKkdy~--spvvt~CG-----H~FC~~Cai~~y~k--g~~C~~Cgk~t~G 242 (259)
T COG5152 197 FLCGICKKDYE--SPVVTECG-----HSFCSLCAIRKYQK--GDECGVCGKATYG 242 (259)
T ss_pred eeehhchhhcc--chhhhhcc-----hhHHHHHHHHHhcc--CCcceecchhhcc
Confidence 48999988765 47889998 68888898776654 5689999987653
No 109
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=31.14 E-value=36 Score=37.53 Aligned_cols=40 Identities=25% Similarity=0.586 Sum_probs=24.3
Q ss_pred CeeeEecccCCCCCeeeccCccCCCcceecHHHHHHHHHhcCCCccc
Q 023042 200 AVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCE 246 (288)
Q Consensus 200 ~~CRICle~~e~g~~Li~PC~CkGsl~~vH~~CL~kWL~~kg~~~CE 246 (288)
-.|.||.-.....-.+..-| .|..|..|.+.|+...+ .|+
T Consensus 1029 ~~C~~C~l~V~gss~~Cg~C-----~Hv~H~sc~~eWf~~gd--~Cp 1068 (1081)
T KOG0309|consen 1029 FQCAICHLAVRGSSNFCGTC-----GHVGHTSCMMEWFRTGD--VCP 1068 (1081)
T ss_pred eeeeeEeeEeeccchhhccc-----cccccHHHHHHHHhcCC--cCC
Confidence 44777754322111122334 37889999999998854 565
No 110
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=29.60 E-value=27 Score=25.79 Aligned_cols=26 Identities=23% Similarity=0.604 Sum_probs=18.8
Q ss_pred ceecHHHHHHHHHhcCCCcccCCCcccc
Q 023042 226 RLVHEECAIRWFSTKGNKNCEVCGKEVQ 253 (288)
Q Consensus 226 ~~vH~~CL~kWL~~kg~~~CEICK~ey~ 253 (288)
||.-..||..-+..+ ..|+||+++++
T Consensus 21 HYLCl~CLt~ml~~s--~~C~iC~~~LP 46 (50)
T PF03854_consen 21 HYLCLNCLTLMLSRS--DRCPICGKPLP 46 (50)
T ss_dssp -EEEHHHHHHT-SSS--SEETTTTEE--
T ss_pred hhHHHHHHHHHhccc--cCCCcccCcCc
Confidence 788889998887664 59999999854
No 111
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=28.39 E-value=28 Score=22.09 Aligned_cols=12 Identities=33% Similarity=0.814 Sum_probs=10.0
Q ss_pred CCcccCCCcccc
Q 023042 242 NKNCEVCGKEVQ 253 (288)
Q Consensus 242 ~~~CEICK~ey~ 253 (288)
...|+.|+|+|.
T Consensus 14 ~~~Cp~CG~~F~ 25 (26)
T PF10571_consen 14 AKFCPHCGYDFE 25 (26)
T ss_pred cCcCCCCCCCCc
Confidence 468999999985
No 112
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=28.34 E-value=8.8 Score=38.39 Aligned_cols=50 Identities=24% Similarity=0.634 Sum_probs=34.6
Q ss_pred CCCCeeeEecccCCCCCeeeccCccCCCcceecHHHHHHHHHhcCCCcccCCCcccc
Q 023042 197 EEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQ 253 (288)
Q Consensus 197 ee~~~CRICle~~e~g~~Li~PC~CkGsl~~vH~~CL~kWL~~kg~~~CEICK~ey~ 253 (288)
..+-+|-||++-... ......|. |-|-..|+.+=+.. +++.|+-|++...
T Consensus 41 ~~~v~c~icl~llk~-tmttkeCl-----hrfc~~ci~~a~r~-gn~ecptcRk~l~ 90 (381)
T KOG0311|consen 41 DIQVICPICLSLLKK-TMTTKECL-----HRFCFDCIWKALRS-GNNECPTCRKKLV 90 (381)
T ss_pred hhhhccHHHHHHHHh-hcccHHHH-----HHHHHHHHHHHHHh-cCCCCchHHhhcc
Confidence 466899999976432 22356675 45666777776665 5789999998754
No 113
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=28.23 E-value=58 Score=24.33 Aligned_cols=45 Identities=22% Similarity=0.600 Sum_probs=30.2
Q ss_pred CCCCeeeEecccCC-CCCeeecc-CccCCCcceecHHHHHHHHHhcCCCcccC--CCccc
Q 023042 197 EEEAVCRICLDICE-EGNTLKME-CSCKGALRLVHEECAIRWFSTKGNKNCEV--CGKEV 252 (288)
Q Consensus 197 ee~~~CRICle~~e-~g~~Li~P-C~CkGsl~~vH~~CL~kWL~~kg~~~CEI--CK~ey 252 (288)
.....|-+|-+.+. +++.++-| |. .-+|+.| |... ..|-+ |+..|
T Consensus 3 ~~~~~C~~Cg~~~~~~dDiVvCp~Cg-----apyHR~C---~~~~---g~C~~~~c~~~~ 51 (54)
T PF14446_consen 3 YEGCKCPVCGKKFKDGDDIVVCPECG-----APYHRDC---WEKA---GGCINYSCGTGF 51 (54)
T ss_pred ccCccChhhCCcccCCCCEEECCCCC-----CcccHHH---HhhC---CceEeccCCCCc
Confidence 46678999988875 45666655 54 5789999 4433 25666 66554
No 114
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.92 E-value=25 Score=38.89 Aligned_cols=38 Identities=21% Similarity=0.353 Sum_probs=27.3
Q ss_pred cCCCCeeeEecccCCCCCeeeccCccCCCcceecHHHHHHHHH
Q 023042 196 AEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFS 238 (288)
Q Consensus 196 ~ee~~~CRICle~~e~g~~Li~PC~CkGsl~~vH~~CL~kWL~ 238 (288)
-+....|.+|....-..--.+-||. |.+|..||.+=..
T Consensus 814 ~ep~d~C~~C~~~ll~~pF~vf~Cg-----H~FH~~Cl~~~v~ 851 (911)
T KOG2034|consen 814 LEPQDSCDHCGRPLLIKPFYVFPCG-----HCFHRDCLIRHVL 851 (911)
T ss_pred ecCccchHHhcchhhcCcceeeecc-----chHHHHHHHHHHH
Confidence 3566889999766543223478998 6899999987654
No 115
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=27.76 E-value=71 Score=31.22 Aligned_cols=53 Identities=15% Similarity=0.326 Sum_probs=38.3
Q ss_pred cccCCCCeeeEecccCCCCCee-eccCccCCCcceecHHHHHHHHHhcCCCcccCCCcccc
Q 023042 194 EIAEEEAVCRICLDICEEGNTL-KMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQ 253 (288)
Q Consensus 194 e~~ee~~~CRICle~~e~g~~L-i~PC~CkGsl~~vH~~CL~kWL~~kg~~~CEICK~ey~ 253 (288)
...+...+|.+|-+.- -.+. +.+|. |.+=+.|+.+=+...-..+|+.|+....
T Consensus 234 s~~t~~~~C~~Cg~~P--tiP~~~~~C~-----HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 234 STGTSDTECPVCGEPP--TIPHVIGKCG-----HIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred ccccCCceeeccCCCC--CCCeeecccc-----ceeehhhhhhhhcchhhcccCccCCCCc
Confidence 3446778999996532 2444 46687 5777899887776655679999999876
No 116
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=26.41 E-value=47 Score=23.66 Aligned_cols=23 Identities=17% Similarity=0.523 Sum_probs=11.7
Q ss_pred HHHHHHHHhc-C-CCcccCCCcccc
Q 023042 231 ECAIRWFSTK-G-NKNCEVCGKEVQ 253 (288)
Q Consensus 231 ~CL~kWL~~k-g-~~~CEICK~ey~ 253 (288)
.-+.+++..- + ...||+|+..|.
T Consensus 7 ~~~~k~i~~l~~~~~~CPlC~r~l~ 31 (54)
T PF04423_consen 7 EELKKYIEELKEAKGCCPLCGRPLD 31 (54)
T ss_dssp HHHHHHHHHHTT-SEE-TTT--EE-
T ss_pred HHHHHHHHHHhcCCCcCCCCCCCCC
Confidence 3456666542 2 239999999875
No 117
>KOG3352 consensus Cytochrome c oxidase, subunit Vb/COX4 [Energy production and conversion]
Probab=26.29 E-value=19 Score=32.10 Aligned_cols=40 Identities=23% Similarity=0.580 Sum_probs=25.0
Q ss_pred eccCccCCCcceecHHHHHHHHHhcCCCcccCCCccccccccee
Q 023042 216 KMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQNLPVTL 259 (288)
Q Consensus 216 i~PC~CkGsl~~vH~~CL~kWL~~kg~~~CEICK~ey~~vpv~l 259 (288)
+-.|.|-..-+.| ..-|+..-....|+.|++.|+.+++..
T Consensus 111 iVGC~c~eD~~~V----~Wmwl~Kge~~rc~eCG~~fkL~~v~~ 150 (153)
T KOG3352|consen 111 IVGCGCEEDSHAV----VWMWLEKGETQRCPECGHYFKLVPVGP 150 (153)
T ss_pred EEeecccCCCcce----EEEEEEcCCcccCCcccceEEeeecCC
Confidence 3455554443332 223555545678999999999887643
No 118
>PF09943 DUF2175: Uncharacterized protein conserved in archaea (DUF2175); InterPro: IPR018686 This family of various hypothetical archaeal proteins has no known function.
Probab=24.73 E-value=66 Score=26.88 Aligned_cols=35 Identities=31% Similarity=0.359 Sum_probs=23.3
Q ss_pred eeeEecccCCCCCeeeccCccCCCcceecHHHHHHHHHhc
Q 023042 201 VCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTK 240 (288)
Q Consensus 201 ~CRICle~~e~g~~Li~PC~CkGsl~~vH~~CL~kWL~~k 240 (288)
.|-||-...-.|+.+.-.=+ ..||..||..=+..+
T Consensus 4 kC~iCg~~I~~gqlFTF~~k-----G~VH~~C~~~~~~~k 38 (101)
T PF09943_consen 4 KCYICGKPIYEGQLFTFTKK-----GPVHYECFREKASKK 38 (101)
T ss_pred EEEecCCeeeecceEEEecC-----CcEeHHHHHHHHhhh
Confidence 69999877666665532211 379999988766543
No 119
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=24.39 E-value=34 Score=19.09 Aligned_cols=12 Identities=33% Similarity=1.018 Sum_probs=7.8
Q ss_pred cccCCCcccccc
Q 023042 244 NCEVCGKEVQNL 255 (288)
Q Consensus 244 ~CEICK~ey~~v 255 (288)
.|++|+..|...
T Consensus 2 ~C~~C~~~~~~~ 13 (24)
T PF13894_consen 2 QCPICGKSFRSK 13 (24)
T ss_dssp E-SSTS-EESSH
T ss_pred CCcCCCCcCCcH
Confidence 699999998743
No 120
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=23.81 E-value=56 Score=32.35 Aligned_cols=52 Identities=19% Similarity=0.397 Sum_probs=35.0
Q ss_pred CCCeeeEecccCCCCCeeeccCccCCCcceecHHHHHHHHHhcCCCcccCCCccccc
Q 023042 198 EEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (288)
Q Consensus 198 e~~~CRICle~~e~g~~Li~PC~CkGsl~~vH~~CL~kWL~~kg~~~CEICK~ey~~ 254 (288)
-...|-||.+..+..+....||.|.- ..+..|+..=.. +...|+.|+..|..
T Consensus 248 v~~s~p~~~~~~~~~d~~~lP~~~~~---~~~l~~~~t~~~--~~~~~~~~rk~~~~ 299 (327)
T KOG2068|consen 248 VPPSCPICYEDLDLTDSNFLPCPCGF---RLCLFCHKTISD--GDGRCPGCRKPYER 299 (327)
T ss_pred cCCCCCCCCCcccccccccccccccc---cchhhhhhcccc--cCCCCCccCCcccc
Confidence 34789999987755555678999852 244444443333 35799999988764
No 121
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=23.18 E-value=48 Score=34.00 Aligned_cols=62 Identities=15% Similarity=0.237 Sum_probs=43.9
Q ss_pred cCCCCeeeEecccCCC-CCeeeccCccCCCcceecHHHHHHHHHhc------CCCcccCCCcccccccceeecc
Q 023042 196 AEEEAVCRICLDICEE-GNTLKMECSCKGALRLVHEECAIRWFSTK------GNKNCEVCGKEVQNLPVTLLRM 262 (288)
Q Consensus 196 ~ee~~~CRICle~~e~-g~~Li~PC~CkGsl~~vH~~CL~kWL~~k------g~~~CEICK~ey~~vpv~llr~ 262 (288)
...--.|-||+++.-. .....+||. |++-+.|+..++... ....|+-|+..=...|-.+.++
T Consensus 181 ~~slf~C~ICf~e~~G~~c~~~lpC~-----Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~~~a~~g~vKel 249 (445)
T KOG1814|consen 181 VNSLFDCCICFEEQMGQHCFKFLPCS-----HVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCGSVAPPGQVKEL 249 (445)
T ss_pred HhhcccceeeehhhcCcceeeecccc-----hHHHHHHHHHHHHHhhhcceeeeecCCCCCCcccCCchHHHHH
Confidence 3456889999987643 234579998 788899999999653 2468999887755555444433
No 122
>KOG4217 consensus Nuclear receptors of the nerve growth factor-induced protein B type [Transcription]
Probab=20.33 E-value=1.8e+02 Score=30.81 Aligned_cols=13 Identities=31% Similarity=0.715 Sum_probs=9.9
Q ss_pred cCCCCeeeEeccc
Q 023042 196 AEEEAVCRICLDI 208 (288)
Q Consensus 196 ~ee~~~CRICle~ 208 (288)
...+..|.+|-+.
T Consensus 266 ~~~e~~CAVCgDn 278 (605)
T KOG4217|consen 266 LSAEGLCAVCGDN 278 (605)
T ss_pred CCccceeeecCCh
Confidence 3458899999765
Done!