Query 023042
Match_columns 288
No_of_seqs 224 out of 954
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 15:22:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023042.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023042hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vyx_A ORF K3, K3RING; zinc-bi 99.7 4.3E-19 1.5E-23 129.9 3.9 56 197-254 4-59 (60)
2 2d8s_A Cellular modulator of i 99.7 1.6E-18 5.4E-23 133.3 4.5 62 194-255 10-71 (80)
3 2kiz_A E3 ubiquitin-protein li 98.7 9.7E-09 3.3E-13 73.9 5.1 54 194-254 9-63 (69)
4 2ep4_A Ring finger protein 24; 98.7 1.3E-08 4.6E-13 74.1 4.9 52 197-255 13-65 (74)
5 1x4j_A Ring finger protein 38; 98.7 8.5E-09 2.9E-13 75.7 3.5 51 196-253 20-71 (75)
6 2l0b_A E3 ubiquitin-protein li 98.6 1.8E-08 6.1E-13 77.2 4.4 51 196-253 37-88 (91)
7 2ect_A Ring finger protein 126 98.6 1.4E-08 4.8E-13 74.7 2.5 55 193-254 9-64 (78)
8 1iym_A EL5; ring-H2 finger, ub 98.6 1.8E-08 6.2E-13 69.3 2.0 50 197-253 3-54 (55)
9 1v87_A Deltex protein 2; ring- 98.5 6.5E-08 2.2E-12 75.9 4.7 52 199-255 25-95 (114)
10 2ecm_A Ring finger and CHY zin 98.5 4.6E-08 1.6E-12 67.1 3.3 50 197-253 3-54 (55)
11 2ecl_A Ring-box protein 2; RNF 98.5 4.3E-08 1.5E-12 73.9 3.1 50 198-254 14-76 (81)
12 2ct2_A Tripartite motif protei 98.5 1.1E-07 3.9E-12 70.6 5.3 55 195-254 11-68 (88)
13 2ea6_A Ring finger protein 4; 98.4 8.7E-08 3E-12 68.1 2.2 51 196-253 12-67 (69)
14 3dpl_R Ring-box protein 1; ubi 98.4 1.9E-07 6.5E-12 74.8 4.3 49 199-254 37-101 (106)
15 2yur_A Retinoblastoma-binding 98.4 2.3E-07 8E-12 68.2 3.7 51 196-253 12-63 (74)
16 1chc_A Equine herpes virus-1 r 98.3 3E-07 1E-11 65.7 3.8 51 197-255 3-53 (68)
17 2csy_A Zinc finger protein 183 98.3 5.2E-07 1.8E-11 67.0 5.0 51 194-253 10-60 (81)
18 2d8t_A Dactylidin, ring finger 98.3 2.7E-07 9.1E-12 67.1 3.2 50 196-254 12-61 (71)
19 2ysl_A Tripartite motif-contai 98.3 5.6E-07 1.9E-11 64.9 3.8 52 196-254 17-69 (73)
20 2ecn_A Ring finger protein 141 98.3 1.5E-07 5E-12 67.9 0.5 48 197-254 13-60 (70)
21 3ng2_A RNF4, snurf, ring finge 98.2 4.1E-07 1.4E-11 65.2 2.6 52 196-254 7-63 (71)
22 2ecw_A Tripartite motif-contai 98.2 9.8E-07 3.4E-11 64.6 4.4 52 196-254 16-71 (85)
23 3ztg_A E3 ubiquitin-protein li 98.2 1.4E-06 4.8E-11 65.7 4.7 53 194-253 8-61 (92)
24 2ecy_A TNF receptor-associated 98.2 1E-06 3.4E-11 63.0 3.1 50 197-254 13-62 (66)
25 2djb_A Polycomb group ring fin 98.1 1.4E-06 4.7E-11 63.4 3.8 49 197-254 13-62 (72)
26 2xeu_A Ring finger protein 4; 98.1 8.6E-07 2.9E-11 62.0 2.6 50 198-254 2-56 (64)
27 2ecv_A Tripartite motif-contai 98.1 1.5E-06 5.1E-11 63.6 3.8 52 196-254 16-71 (85)
28 2ct0_A Non-SMC element 1 homol 98.1 1.4E-06 4.7E-11 66.3 3.3 53 196-254 12-64 (74)
29 1t1h_A Gspef-atpub14, armadill 98.1 2.4E-06 8.4E-11 62.6 4.1 51 196-254 5-55 (78)
30 2ysj_A Tripartite motif-contai 98.1 3E-06 1E-10 59.9 4.3 46 196-248 17-63 (63)
31 4a0k_B E3 ubiquitin-protein li 98.1 5.5E-07 1.9E-11 73.8 0.4 48 200-254 49-112 (117)
32 2ecj_A Tripartite motif-contai 98.1 2.5E-06 8.4E-11 58.8 3.3 46 196-248 12-58 (58)
33 4ayc_A E3 ubiquitin-protein li 98.0 1.1E-06 3.6E-11 71.9 0.5 50 198-256 52-101 (138)
34 2egp_A Tripartite motif-contai 97.9 1.5E-06 5.1E-11 63.4 0.5 51 197-254 10-65 (79)
35 1e4u_A Transcriptional repress 97.9 6.9E-06 2.4E-10 62.2 3.9 58 197-258 9-66 (78)
36 3lrq_A E3 ubiquitin-protein li 97.9 4.8E-06 1.6E-10 64.6 2.9 50 197-254 20-70 (100)
37 1g25_A CDK-activating kinase a 97.9 5.9E-06 2E-10 58.8 2.4 51 198-254 2-55 (65)
38 3fl2_A E3 ubiquitin-protein li 97.8 1.2E-05 4.1E-10 64.1 3.5 50 197-254 50-99 (124)
39 4ap4_A E3 ubiquitin ligase RNF 97.8 7.9E-06 2.7E-10 64.1 2.2 55 197-258 5-64 (133)
40 2y43_A E3 ubiquitin-protein li 97.8 7.4E-06 2.5E-10 62.8 1.8 49 197-254 20-69 (99)
41 2ckl_B Ubiquitin ligase protei 97.7 1.5E-05 5.2E-10 66.5 3.5 49 197-253 52-101 (165)
42 2ckl_A Polycomb group ring fin 97.7 1.6E-05 5.3E-10 62.0 2.9 49 197-254 13-62 (108)
43 1jm7_A BRCA1, breast cancer ty 97.7 1.6E-05 5.4E-10 61.6 2.5 50 198-254 20-70 (112)
44 3k1l_B Fancl; UBC, ring, RWD, 97.6 1.5E-05 5.1E-10 76.8 2.4 57 195-254 304-373 (381)
45 1z6u_A NP95-like ring finger p 97.6 3.2E-05 1.1E-09 64.6 3.5 51 197-255 76-126 (150)
46 1rmd_A RAG1; V(D)J recombinati 97.6 2.5E-05 8.4E-10 61.5 2.6 51 196-254 20-70 (116)
47 3hct_A TNF receptor-associated 97.5 5.4E-05 1.8E-09 60.1 3.8 51 196-254 15-65 (118)
48 4ap4_A E3 ubiquitin ligase RNF 97.5 3.6E-05 1.2E-09 60.3 2.7 51 197-254 70-125 (133)
49 3l11_A E3 ubiquitin-protein li 97.5 1.1E-05 3.9E-10 63.3 -1.1 50 197-254 13-62 (115)
50 2y1n_A E3 ubiquitin-protein li 97.4 9.3E-05 3.2E-09 71.6 4.3 51 197-255 330-380 (389)
51 2vje_B MDM4 protein; proto-onc 97.3 8E-05 2.7E-09 53.6 2.3 51 195-254 3-56 (63)
52 2kr4_A Ubiquitin conjugation f 97.3 0.00026 9E-09 53.7 4.8 50 196-254 11-60 (85)
53 2kre_A Ubiquitin conjugation f 97.2 0.00057 2E-08 53.7 6.1 51 195-254 25-75 (100)
54 1wgm_A Ubiquitin conjugation f 97.0 0.00048 1.6E-08 53.9 4.0 51 196-254 19-69 (98)
55 4ic3_A E3 ubiquitin-protein li 97.0 9.2E-05 3.1E-09 54.6 -0.3 46 197-255 22-68 (74)
56 2c2l_A CHIP, carboxy terminus 97.0 0.00052 1.8E-08 59.9 4.2 50 197-254 206-255 (281)
57 1jm7_B BARD1, BRCA1-associated 96.9 9.8E-05 3.3E-09 58.5 -0.7 46 197-253 20-66 (117)
58 2vje_A E3 ubiquitin-protein li 96.9 0.00036 1.2E-08 50.3 2.1 49 197-254 6-57 (64)
59 1bor_A Transcription factor PM 96.8 0.00015 5.2E-09 50.7 -0.3 46 197-254 4-49 (56)
60 3knv_A TNF receptor-associated 96.8 0.00021 7.1E-09 59.2 0.5 51 195-253 27-77 (141)
61 2yu4_A E3 SUMO-protein ligase 96.6 0.0021 7.1E-08 49.4 4.5 48 197-251 5-59 (94)
62 3hcs_A TNF receptor-associated 96.6 0.0012 4.2E-08 54.9 3.4 51 196-254 15-65 (170)
63 2ea5_A Cell growth regulator w 96.5 0.0012 4E-08 48.4 2.6 50 193-255 9-59 (68)
64 3nw0_A Non-structural maintena 96.5 0.0014 4.9E-08 59.0 3.4 55 198-259 179-234 (238)
65 2f42_A STIP1 homology and U-bo 96.4 0.002 7E-08 56.1 3.6 50 197-254 104-153 (179)
66 2ecg_A Baculoviral IAP repeat- 96.1 0.0023 7.7E-08 46.9 2.2 45 197-254 23-68 (75)
67 1wim_A KIAA0161 protein; ring 95.9 0.0044 1.5E-07 47.0 3.0 51 198-253 4-63 (94)
68 3htk_C E3 SUMO-protein ligase 95.7 0.008 2.7E-07 55.7 4.4 51 197-254 179-232 (267)
69 3t6p_A Baculoviral IAP repeat- 95.2 0.003 1E-07 59.7 -0.2 45 197-254 293-338 (345)
70 2yho_A E3 ubiquitin-protein li 94.6 0.0056 1.9E-07 45.8 -0.2 46 197-255 16-62 (79)
71 2bay_A PRE-mRNA splicing facto 94.5 0.023 7.7E-07 40.9 2.8 46 200-254 4-50 (61)
72 2lri_C Autoimmune regulator; Z 93.0 0.038 1.3E-06 40.8 1.8 57 193-256 6-64 (66)
73 1weo_A Cellulose synthase, cat 87.6 0.5 1.7E-05 37.6 3.9 51 198-254 15-70 (93)
74 2l43_A N-teminal domain from h 85.1 0.15 5.1E-06 39.4 -0.3 54 196-252 22-76 (88)
75 1weu_A Inhibitor of growth fam 83.6 0.21 7.1E-06 39.2 -0.1 52 193-251 30-85 (91)
76 1wev_A Riken cDNA 1110020M19; 80.2 0.078 2.7E-06 40.8 -3.7 54 197-253 14-74 (88)
77 2ku3_A Bromodomain-containing 79.6 0.28 9.7E-06 36.5 -0.7 52 197-251 14-66 (71)
78 2k16_A Transcription initiatio 79.4 0.37 1.3E-05 35.4 -0.1 53 196-252 15-69 (75)
79 3u5n_A E3 ubiquitin-protein li 79.2 0.2 6.9E-06 43.4 -1.8 50 196-252 4-55 (207)
80 1wen_A Inhibitor of growth fam 77.0 0.4 1.4E-05 35.6 -0.5 52 193-251 10-65 (71)
81 2l5u_A Chromodomain-helicase-D 72.5 0.9 3.1E-05 32.5 0.4 49 196-251 8-58 (61)
82 2ri7_A Nucleosome-remodeling f 71.9 0.6 2.1E-05 39.0 -0.7 52 197-252 6-60 (174)
83 3ql9_A Transcriptional regulat 71.4 3.4 0.00012 34.3 3.7 49 196-251 54-111 (129)
84 2jmi_A Protein YNG1, ING1 homo 70.3 0.31 1.1E-05 38.1 -2.6 51 193-250 20-75 (90)
85 1f62_A Transcription factor WS 70.3 1.2 4.1E-05 30.2 0.7 47 200-250 1-49 (51)
86 2ysm_A Myeloid/lymphoid or mix 69.3 0.73 2.5E-05 36.1 -0.7 38 197-238 5-42 (111)
87 1wep_A PHF8; structural genomi 69.1 2.3 7.9E-05 31.6 2.1 53 196-252 9-64 (79)
88 2e6r_A Jumonji/ARID domain-con 68.1 0.28 9.7E-06 38.0 -3.3 52 195-251 12-66 (92)
89 2vnf_A ING 4, P29ING4, inhibit 67.9 0.32 1.1E-05 34.9 -2.8 48 196-250 7-58 (60)
90 3o36_A Transcription intermedi 67.6 0.66 2.3E-05 39.3 -1.4 49 197-252 2-52 (184)
91 2ko5_A Ring finger protein Z; 66.5 2 6.8E-05 34.5 1.3 46 198-253 27-72 (99)
92 2lbm_A Transcriptional regulat 66.5 3.6 0.00012 34.6 3.0 48 197-251 61-117 (142)
93 2yt5_A Metal-response element- 62.9 0.53 1.8E-05 33.6 -2.5 53 196-251 3-61 (66)
94 2lv9_A Histone-lysine N-methyl 61.5 1.8 6.3E-05 33.6 0.2 50 197-251 26-76 (98)
95 4gne_A Histone-lysine N-methyl 61.0 1.6 5.6E-05 34.9 -0.2 49 193-248 9-59 (107)
96 3vk6_A E3 ubiquitin-protein li 60.9 6.4 0.00022 31.6 3.3 37 216-258 17-53 (101)
97 2vpb_A Hpygo1, pygopus homolog 57.0 4.6 0.00016 29.3 1.7 34 196-233 5-40 (65)
98 1mm2_A MI2-beta; PHD, zinc fin 55.0 1 3.4E-05 32.2 -2.2 48 197-251 7-56 (61)
99 3v43_A Histone acetyltransfera 51.3 7.1 0.00024 30.7 2.0 35 198-235 4-43 (112)
100 2xb1_A Pygopus homolog 2, B-ce 50.2 4.1 0.00014 32.1 0.5 51 200-253 4-63 (105)
101 1wil_A KIAA1045 protein; ring 49.0 10 0.00034 29.9 2.5 49 197-251 13-76 (89)
102 1we9_A PHD finger family prote 48.4 5.8 0.0002 28.0 1.0 53 196-251 3-58 (64)
103 2yql_A PHD finger protein 21A; 48.3 1 3.4E-05 31.5 -3.0 48 196-250 6-55 (56)
104 1x4i_A Inhibitor of growth pro 47.4 2.5 8.7E-05 31.1 -1.1 52 196-252 3-56 (70)
105 1fp0_A KAP-1 corepressor; PHD 47.2 4.1 0.00014 31.7 0.0 49 196-251 22-72 (88)
106 1wew_A DNA-binding family prot 45.8 18 0.00063 26.6 3.5 55 191-251 8-72 (78)
107 2g6q_A Inhibitor of growth pro 45.6 0.82 2.8E-05 33.1 -3.9 49 195-250 7-59 (62)
108 1xwh_A Autoimmune regulator; P 45.2 1.7 5.8E-05 31.3 -2.3 47 197-250 6-54 (66)
109 2kwj_A Zinc finger protein DPF 44.5 4.7 0.00016 31.9 0.0 35 200-237 2-42 (114)
110 1wem_A Death associated transc 43.2 18 0.0006 26.4 3.0 52 195-251 12-70 (76)
111 3v43_A Histone acetyltransfera 39.8 4 0.00014 32.1 -1.1 47 201-250 63-111 (112)
112 2e6s_A E3 ubiquitin-protein li 39.0 3.6 0.00012 30.9 -1.4 46 201-250 28-76 (77)
113 3ask_A E3 ubiquitin-protein li 36.1 6.4 0.00022 35.5 -0.5 49 199-251 174-225 (226)
114 3c6w_A P28ING5, inhibitor of g 35.3 1.5 5E-05 31.4 -3.9 47 197-250 7-57 (59)
115 2puy_A PHD finger protein 21A; 34.5 2.8 9.5E-05 29.5 -2.5 48 197-251 3-52 (60)
116 3kv5_D JMJC domain-containing 34.1 5.6 0.00019 39.2 -1.3 52 197-252 35-89 (488)
117 3asl_A E3 ubiquitin-protein li 33.8 3.8 0.00013 30.1 -1.9 47 201-251 20-69 (70)
118 2ro1_A Transcription intermedi 32.1 5.1 0.00017 34.4 -1.8 46 199-251 2-49 (189)
119 1wee_A PHD finger family prote 29.9 13 0.00044 26.9 0.4 51 197-251 14-66 (72)
120 2kgg_A Histone demethylase jar 28.7 10 0.00034 26.0 -0.4 46 201-249 4-52 (52)
121 3i2d_A E3 SUMO-protein ligase 28.1 72 0.0025 30.6 5.3 40 212-254 256-300 (371)
122 3shb_A E3 ubiquitin-protein li 24.7 5.5 0.00019 30.0 -2.5 47 201-251 28-77 (77)
123 2rsd_A E3 SUMO-protein ligase 24.0 20 0.0007 25.7 0.5 49 196-250 7-64 (68)
124 3kqi_A GRC5, PHD finger protei 22.4 41 0.0014 24.4 1.9 51 197-251 8-61 (75)
125 3o70_A PHD finger protein 13; 20.1 30 0.001 25.1 0.7 53 192-249 12-65 (68)
No 1
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=99.75 E-value=4.3e-19 Score=129.86 Aligned_cols=56 Identities=34% Similarity=0.789 Sum_probs=50.5
Q ss_pred CCCCeeeEecccCCCCCeeeccCccCCCcceecHHHHHHHHHhcCCCcccCCCccccc
Q 023042 197 EEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (288)
Q Consensus 197 ee~~~CRICle~~e~g~~Li~PC~CkGsl~~vH~~CL~kWL~~kg~~~CEICK~ey~~ 254 (288)
+++.+||||+++. ++++++||+|+|+++|||+.||.+|+..+++.+||+|+++|.+
T Consensus 4 ~~~~~CrIC~~~~--~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 4 EDVPVCWICNEEL--GNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp CSCCEETTTTEEC--SCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCCEeEEeecCC--CCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 5678999999864 3568999999999999999999999999989999999999974
No 2
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=1.6e-18 Score=133.25 Aligned_cols=62 Identities=27% Similarity=0.693 Sum_probs=54.9
Q ss_pred cccCCCCeeeEecccCCCCCeeeccCccCCCcceecHHHHHHHHHhcCCCcccCCCcccccc
Q 023042 194 EIAEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQNL 255 (288)
Q Consensus 194 e~~ee~~~CRICle~~e~g~~Li~PC~CkGsl~~vH~~CL~kWL~~kg~~~CEICK~ey~~v 255 (288)
+.++++..|+||++++++++.+++||+|+|++|+||..||++||..+++.+||+|++.|.+.
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~ 71 (80)
T 2d8s_A 10 ITPSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIME 71 (80)
T ss_dssp CCCTTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCC
T ss_pred CCCCCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecC
Confidence 33456789999999887778899999999999999999999999998888999999999753
No 3
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.74 E-value=9.7e-09 Score=73.92 Aligned_cols=54 Identities=33% Similarity=0.839 Sum_probs=43.1
Q ss_pred cccCCCCeeeEecccCCCC-CeeeccCccCCCcceecHHHHHHHHHhcCCCcccCCCccccc
Q 023042 194 EIAEEEAVCRICLDICEEG-NTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (288)
Q Consensus 194 e~~ee~~~CRICle~~e~g-~~Li~PC~CkGsl~~vH~~CL~kWL~~kg~~~CEICK~ey~~ 254 (288)
+..++...|.||++....+ ....+||. |.||..||.+|+..+ ..|++|+..+..
T Consensus 9 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 9 TEEDTEEKCTICLSILEEGEDVRRLPCM-----HLFHQVCVDQWLITN--KKCPICRVDIEA 63 (69)
T ss_dssp CSTTCCCSBTTTTBCCCSSSCEEECTTS-----CEEEHHHHHHHHHHC--SBCTTTCSBSCS
T ss_pred CcCCCCCCCeeCCccccCCCcEEEeCCC-----CHHHHHHHHHHHHcC--CCCcCcCccccC
Confidence 3446678899999987544 45678987 689999999999875 479999999764
No 4
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.70 E-value=1.3e-08 Score=74.09 Aligned_cols=52 Identities=25% Similarity=0.685 Sum_probs=41.6
Q ss_pred CCCCeeeEecccCCCCCe-eeccCccCCCcceecHHHHHHHHHhcCCCcccCCCcccccc
Q 023042 197 EEEAVCRICLDICEEGNT-LKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQNL 255 (288)
Q Consensus 197 ee~~~CRICle~~e~g~~-Li~PC~CkGsl~~vH~~CL~kWL~~kg~~~CEICK~ey~~v 255 (288)
+++..|.||++....+.. .++||. |.||..||.+|+..+ ..|++|+..+..+
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~-----H~f~~~Ci~~~~~~~--~~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICPCK-----HAFHRKCLIKWLEVR--KVCPLCNMPVLQL 65 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEETTT-----EEEEHHHHHHHHHHC--SBCTTTCCBCSSC
T ss_pred CCCCCCcCCCcccCCCCcEEEcCCC-----CEecHHHHHHHHHcC--CcCCCcCcccccc
Confidence 456789999998765443 467886 789999999999875 4899999987654
No 5
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.69 E-value=8.5e-09 Score=75.67 Aligned_cols=51 Identities=20% Similarity=0.662 Sum_probs=41.7
Q ss_pred cCCCCeeeEecccCCCCCe-eeccCccCCCcceecHHHHHHHHHhcCCCcccCCCcccc
Q 023042 196 AEEEAVCRICLDICEEGNT-LKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQ 253 (288)
Q Consensus 196 ~ee~~~CRICle~~e~g~~-Li~PC~CkGsl~~vH~~CL~kWL~~kg~~~CEICK~ey~ 253 (288)
.++...|.||++....++. ..+||. |.||..||.+|+..+ ..|++|++++.
T Consensus 20 ~~~~~~C~IC~~~~~~~~~~~~l~C~-----H~fh~~Ci~~w~~~~--~~CP~Cr~~~~ 71 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFESRQLLRVLPCN-----HEFHAKCVDKWLKAN--RTCPICRADSG 71 (75)
T ss_dssp SSSCCEETTTTEECCBTCEEEEETTT-----EEEETTHHHHHHHHC--SSCTTTCCCCC
T ss_pred cCCCCCCeECCcccCCCCeEEEECCC-----CHhHHHHHHHHHHcC--CcCcCcCCcCC
Confidence 3567899999998765554 468987 689999999999874 58999999865
No 6
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.65 E-value=1.8e-08 Score=77.24 Aligned_cols=51 Identities=24% Similarity=0.642 Sum_probs=41.6
Q ss_pred cCCCCeeeEecccCCCCCe-eeccCccCCCcceecHHHHHHHHHhcCCCcccCCCcccc
Q 023042 196 AEEEAVCRICLDICEEGNT-LKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQ 253 (288)
Q Consensus 196 ~ee~~~CRICle~~e~g~~-Li~PC~CkGsl~~vH~~CL~kWL~~kg~~~CEICK~ey~ 253 (288)
.+++..|.||++.+..++. ..+||. |.||..||.+|+..+ ..|++|+..+.
T Consensus 37 ~~~~~~C~IC~~~~~~~~~~~~l~C~-----H~Fh~~Ci~~wl~~~--~~CP~Cr~~~~ 88 (91)
T 2l0b_A 37 VGQEMCCPICCSEYVKGDVATELPCH-----HYFHKPCVSIWLQKS--GTCPVCRCMFP 88 (91)
T ss_dssp SSSCSEETTTTEECCTTCEEEEETTT-----EEEEHHHHHHHHTTT--CBCTTTCCBSS
T ss_pred cCCCCCCcccChhhcCCCcEEecCCC-----ChHHHHHHHHHHHcC--CcCcCcCccCC
Confidence 3567899999998866554 468987 789999999999764 59999999865
No 7
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.60 E-value=1.4e-08 Score=74.69 Aligned_cols=55 Identities=25% Similarity=0.704 Sum_probs=43.4
Q ss_pred ccccCCCCeeeEecccCCCCC-eeeccCccCCCcceecHHHHHHHHHhcCCCcccCCCccccc
Q 023042 193 EEIAEEEAVCRICLDICEEGN-TLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (288)
Q Consensus 193 ee~~ee~~~CRICle~~e~g~-~Li~PC~CkGsl~~vH~~CL~kWL~~kg~~~CEICK~ey~~ 254 (288)
++..++...|.||++.+.... ..++||. |.||..||.+|+..+ ..|++|+..+..
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~C~-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~~ 64 (78)
T 2ect_A 9 EEHVGSGLECPVCKEDYALGESVRQLPCN-----HLFHDSCIVPWLEQH--DSCPVCRKSLTG 64 (78)
T ss_dssp CTTSSSSCCCTTTTSCCCTTSCEEECTTS-----CEEETTTTHHHHTTT--CSCTTTCCCCCC
T ss_pred cccCCCCCCCeeCCccccCCCCEEEeCCC-----CeecHHHHHHHHHcC--CcCcCcCCccCC
Confidence 334466789999999876544 3467987 689999999999764 689999999764
No 8
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.56 E-value=1.8e-08 Score=69.32 Aligned_cols=50 Identities=26% Similarity=0.705 Sum_probs=39.7
Q ss_pred CCCCeeeEecccCCCCC-eeecc-CccCCCcceecHHHHHHHHHhcCCCcccCCCcccc
Q 023042 197 EEEAVCRICLDICEEGN-TLKME-CSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQ 253 (288)
Q Consensus 197 ee~~~CRICle~~e~g~-~Li~P-C~CkGsl~~vH~~CL~kWL~~kg~~~CEICK~ey~ 253 (288)
+++..|.||++....++ ...+| |. |.||..||.+|+.. ...||+|+..+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~-----H~f~~~Ci~~w~~~--~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCG-----HGFHAECVDMWLGS--HSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSC-----CEECTTHHHHTTTT--CCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCC-----CcccHHHHHHHHHc--CCcCcCCCCEeE
Confidence 45678999999876544 45666 76 68999999999976 468999998864
No 9
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.53 E-value=6.5e-08 Score=75.87 Aligned_cols=52 Identities=21% Similarity=0.474 Sum_probs=39.7
Q ss_pred CCeeeEecccCCCCC----------------eeeccCccCCCcceecHHHHHHHHHh---cCCCcccCCCcccccc
Q 023042 199 EAVCRICLDICEEGN----------------TLKMECSCKGALRLVHEECAIRWFST---KGNKNCEVCGKEVQNL 255 (288)
Q Consensus 199 ~~~CRICle~~e~g~----------------~Li~PC~CkGsl~~vH~~CL~kWL~~---kg~~~CEICK~ey~~v 255 (288)
+..|.||++.+.... ..+++|. |.||..||.+|+.. +....||+|+..|...
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~-----H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCS-----HAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSC-----CEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCC-----CcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 358999998864321 1167887 79999999999965 3467999999998743
No 10
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.53 E-value=4.6e-08 Score=67.10 Aligned_cols=50 Identities=20% Similarity=0.502 Sum_probs=40.4
Q ss_pred CCCCeeeEecccCCCC--CeeeccCccCCCcceecHHHHHHHHHhcCCCcccCCCcccc
Q 023042 197 EEEAVCRICLDICEEG--NTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQ 253 (288)
Q Consensus 197 ee~~~CRICle~~e~g--~~Li~PC~CkGsl~~vH~~CL~kWL~~kg~~~CEICK~ey~ 253 (288)
.+...|.||++...++ ...+++|. |.||..||.+|+... ..||+|+..+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~ 54 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLPCG-----HLLHRTCYEEMLKEG--YRCPLCSGPSS 54 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECTTS-----CEEETTHHHHHHHHT--CCCTTSCCSSC
T ss_pred CCCCcCcccChhhcCCCcCeEecCCC-----CcccHHHHHHHHHcC--CcCCCCCCcCC
Confidence 3567899999987432 35678987 689999999999885 68999998864
No 11
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.51 E-value=4.3e-08 Score=73.88 Aligned_cols=50 Identities=20% Similarity=0.529 Sum_probs=36.9
Q ss_pred CCCeeeEecccCCC-----------CC-eeecc-CccCCCcceecHHHHHHHHHhcCCCcccCCCccccc
Q 023042 198 EEAVCRICLDICEE-----------GN-TLKME-CSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (288)
Q Consensus 198 e~~~CRICle~~e~-----------g~-~Li~P-C~CkGsl~~vH~~CL~kWL~~kg~~~CEICK~ey~~ 254 (288)
++..|.||++.+++ ++ ..+++ |. |.||..||.+|+..+ .+||+|++++..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~-----H~FH~~Ci~~Wl~~~--~~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECN-----HSFHNCCMSLWVKQN--NRCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTS-----CEEEHHHHHHHTTTC--CBCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCC-----CccChHHHHHHHHhC--CCCCCcCCCcch
Confidence 34568888776632 23 34554 76 799999999999875 599999999764
No 12
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.51 E-value=1.1e-07 Score=70.61 Aligned_cols=55 Identities=18% Similarity=0.483 Sum_probs=44.3
Q ss_pred ccCCCCeeeEecccCCCCC--eeeccCccCCCcceecHHHHHHHHHhc-CCCcccCCCccccc
Q 023042 195 IAEEEAVCRICLDICEEGN--TLKMECSCKGALRLVHEECAIRWFSTK-GNKNCEVCGKEVQN 254 (288)
Q Consensus 195 ~~ee~~~CRICle~~e~g~--~Li~PC~CkGsl~~vH~~CL~kWL~~k-g~~~CEICK~ey~~ 254 (288)
..++...|.||++.+.+++ +..++|. |.||..|+.+|+..+ +...|++|+..+..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 11 ALREVLECPICMESFTEEQLRPKLLHCG-----HTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp CCCSCCBCTTTCCBCCTTSSCEEECSSS-----CEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred hccCCCCCccCCccccccCCCeEECCCC-----ChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 3456788999999876543 6778987 789999999999875 35799999998764
No 13
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.40 E-value=8.7e-08 Score=68.07 Aligned_cols=51 Identities=24% Similarity=0.621 Sum_probs=40.3
Q ss_pred cCCCCeeeEecccCCC----CC-eeeccCccCCCcceecHHHHHHHHHhcCCCcccCCCcccc
Q 023042 196 AEEEAVCRICLDICEE----GN-TLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQ 253 (288)
Q Consensus 196 ~ee~~~CRICle~~e~----g~-~Li~PC~CkGsl~~vH~~CL~kWL~~kg~~~CEICK~ey~ 253 (288)
.++...|.||++...+ +. ...++|. |.||..||.+|+.. ...|++|+..+.
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~--~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 12 PSGTVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKN--ANTCPTCRKKIN 67 (69)
T ss_dssp TTCCCCCTTTCCCHHHHTTTTCCEEECSSS-----CEEEHHHHHHHHHH--CSSCTTTCCCCC
T ss_pred CCCCCCCcccCccccccccccCCeEeCCCC-----ChhcHHHHHHHHHc--CCCCCCCCCccC
Confidence 3567889999987642 22 2578897 68999999999987 458999999875
No 14
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.40 E-value=1.9e-07 Score=74.84 Aligned_cols=49 Identities=22% Similarity=0.437 Sum_probs=37.7
Q ss_pred CCeeeEecccCCCC----------------CeeeccCccCCCcceecHHHHHHHHHhcCCCcccCCCccccc
Q 023042 199 EAVCRICLDICEEG----------------NTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (288)
Q Consensus 199 ~~~CRICle~~e~g----------------~~Li~PC~CkGsl~~vH~~CL~kWL~~kg~~~CEICK~ey~~ 254 (288)
+..|.||++.+++. ....++|. |.||..||.+||.. +.+||+|+.+|.+
T Consensus 37 ~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~-----H~FH~~Ci~~Wl~~--~~~CP~Cr~~~~~ 101 (106)
T 3dpl_R 37 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCN-----HAFHFHCISRWLKT--RQVCPLDNREWEF 101 (106)
T ss_dssp SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTS-----CEEEHHHHHHHHTT--CSBCSSSCSBCCE
T ss_pred CCCCccCChhHhCcCchhhccccccCCccceEeecccC-----cEECHHHHHHHHHc--CCcCcCCCCccee
Confidence 45699998775422 13457887 79999999999987 4699999999753
No 15
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.36 E-value=2.3e-07 Score=68.17 Aligned_cols=51 Identities=22% Similarity=0.527 Sum_probs=42.3
Q ss_pred cCCCCeeeEecccCCCCCeeecc-CccCCCcceecHHHHHHHHHhcCCCcccCCCcccc
Q 023042 196 AEEEAVCRICLDICEEGNTLKME-CSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQ 253 (288)
Q Consensus 196 ~ee~~~CRICle~~e~g~~Li~P-C~CkGsl~~vH~~CL~kWL~~kg~~~CEICK~ey~ 253 (288)
.+++..|.||++... ++..+| |. |.||..||.+|+..++...|++|+..+.
T Consensus 12 ~~~~~~C~IC~~~~~--~p~~~~~Cg-----H~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 12 IPDELLCLICKDIMT--DAVVIPCCG-----NSYCDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp SCGGGSCSSSCCCCT--TCEECSSSC-----CEECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred CCCCCCCcCCChHHh--CCeEcCCCC-----CHHHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 356788999998765 467788 87 6899999999999876679999999754
No 16
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.34 E-value=3e-07 Score=65.72 Aligned_cols=51 Identities=22% Similarity=0.589 Sum_probs=41.0
Q ss_pred CCCCeeeEecccCCCCCeeeccCccCCCcceecHHHHHHHHHhcCCCcccCCCcccccc
Q 023042 197 EEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQNL 255 (288)
Q Consensus 197 ee~~~CRICle~~e~g~~Li~PC~CkGsl~~vH~~CL~kWL~~kg~~~CEICK~ey~~v 255 (288)
+++..|.||++...+ ....+||. |.||..|+.+|+..+ ..||+|+..+..+
T Consensus 3 ~~~~~C~IC~~~~~~-~~~~~~C~-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~~~ 53 (68)
T 1chc_A 3 TVAERCPICLEDPSN-YSMALPCL-----HAFCYVCITRWIRQN--PTCPLCKVPVESV 53 (68)
T ss_dssp CCCCCCSSCCSCCCS-CEEETTTT-----EEESTTHHHHHHHHS--CSTTTTCCCCCCE
T ss_pred CCCCCCeeCCccccC-CcEecCCC-----CeeHHHHHHHHHhCc--CcCcCCChhhHhh
Confidence 456789999987643 24678987 689999999999864 5899999998743
No 17
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.33 E-value=5.2e-07 Score=66.95 Aligned_cols=51 Identities=25% Similarity=0.563 Sum_probs=41.9
Q ss_pred cccCCCCeeeEecccCCCCCeeeccCccCCCcceecHHHHHHHHHhcCCCcccCCCcccc
Q 023042 194 EIAEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQ 253 (288)
Q Consensus 194 e~~ee~~~CRICle~~e~g~~Li~PC~CkGsl~~vH~~CL~kWL~~kg~~~CEICK~ey~ 253 (288)
+..++...|.||++... +++++||. |.||..||.+|+.. ...|++|+..+.
T Consensus 10 ~~~~~~~~C~IC~~~~~--~p~~~~Cg-----H~fC~~Ci~~~~~~--~~~CP~Cr~~~~ 60 (81)
T 2csy_A 10 EEEEIPFRCFICRQAFQ--NPVVTKCR-----HYFCESCALEHFRA--TPRCYICDQPTG 60 (81)
T ss_dssp SCCCCCSBCSSSCSBCC--SEEECTTS-----CEEEHHHHHHHHHH--CSBCSSSCCBCC
T ss_pred ccCCCCCCCcCCCchhc--CeeEccCC-----CHhHHHHHHHHHHC--CCcCCCcCcccc
Confidence 33456789999998764 47788997 68999999999976 468999999986
No 18
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.32 E-value=2.7e-07 Score=67.07 Aligned_cols=50 Identities=22% Similarity=0.537 Sum_probs=40.8
Q ss_pred cCCCCeeeEecccCCCCCeeeccCccCCCcceecHHHHHHHHHhcCCCcccCCCccccc
Q 023042 196 AEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (288)
Q Consensus 196 ~ee~~~CRICle~~e~g~~Li~PC~CkGsl~~vH~~CL~kWL~~kg~~~CEICK~ey~~ 254 (288)
..+...|.||++... ++..+||. |.||..||.+|+... ..|++|+..+..
T Consensus 12 ~~~~~~C~IC~~~~~--~~~~~~Cg-----H~fC~~Ci~~~~~~~--~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 12 SLTVPECAICLQTCV--HPVSLPCK-----HVFCYLCVKGASWLG--KRCALCRQEIPE 61 (71)
T ss_dssp SSSCCBCSSSSSBCS--SEEEETTT-----EEEEHHHHHHCTTCS--SBCSSSCCBCCH
T ss_pred CCCCCCCccCCcccC--CCEEccCC-----CHHHHHHHHHHHHCC--CcCcCcCchhCH
Confidence 356678999998764 46778987 689999999999764 699999999763
No 19
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.26 E-value=5.6e-07 Score=64.95 Aligned_cols=52 Identities=29% Similarity=0.637 Sum_probs=41.9
Q ss_pred cCCCCeeeEecccCCCCCeeeccCccCCCcceecHHHHHHHHHh-cCCCcccCCCccccc
Q 023042 196 AEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFST-KGNKNCEVCGKEVQN 254 (288)
Q Consensus 196 ~ee~~~CRICle~~e~g~~Li~PC~CkGsl~~vH~~CL~kWL~~-kg~~~CEICK~ey~~ 254 (288)
.++...|.||++... ++..++|. |.||..||.+|+.. .+...|++|+..+..
T Consensus 17 ~~~~~~C~IC~~~~~--~~~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 17 LQEEVICPICLDILQ--KPVTIDCG-----HNFCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCCCBCTTTCSBCS--SEEECTTC-----CEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred CccCCEeccCCcccC--CeEEcCCC-----ChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 356789999998765 46777887 68999999999974 346799999998763
No 20
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.26 E-value=1.5e-07 Score=67.86 Aligned_cols=48 Identities=25% Similarity=0.728 Sum_probs=40.1
Q ss_pred CCCCeeeEecccCCCCCeeeccCccCCCcceecHHHHHHHHHhcCCCcccCCCccccc
Q 023042 197 EEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (288)
Q Consensus 197 ee~~~CRICle~~e~g~~Li~PC~CkGsl~~vH~~CL~kWL~~kg~~~CEICK~ey~~ 254 (288)
++...|.||++...+ ..+||. |.||..|+.+|+.. ...|++|+..+..
T Consensus 13 ~~~~~C~IC~~~~~~---~~~~Cg-----H~fc~~Ci~~~~~~--~~~CP~Cr~~~~~ 60 (70)
T 2ecn_A 13 TDEEECCICMDGRAD---LILPCA-----HSFCQKCIDKWSDR--HRNCPICRLQMTG 60 (70)
T ss_dssp CCCCCCSSSCCSCCS---EEETTT-----EEECHHHHHHSSCC--CSSCHHHHHCTTC
T ss_pred CCCCCCeeCCcCccC---cccCCC-----CcccHHHHHHHHHC--cCcCCCcCCcccC
Confidence 456789999988654 778997 68999999999984 5799999998774
No 21
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.24 E-value=4.1e-07 Score=65.21 Aligned_cols=52 Identities=23% Similarity=0.616 Sum_probs=40.9
Q ss_pred cCCCCeeeEecccCCC----CC-eeeccCccCCCcceecHHHHHHHHHhcCCCcccCCCccccc
Q 023042 196 AEEEAVCRICLDICEE----GN-TLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (288)
Q Consensus 196 ~ee~~~CRICle~~e~----g~-~Li~PC~CkGsl~~vH~~CL~kWL~~kg~~~CEICK~ey~~ 254 (288)
.+++..|.||++...+ +. ...++|. |.||..||.+|+..+ ..|++|+..+..
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKNA--NTCPTCRKKINH 63 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECTTS-----CEEEHHHHHHHHHHC--SBCTTTCCBCCC
T ss_pred CCCCCCCcccChhhhccccccCCeEeCCCC-----ChHhHHHHHHHHHcC--CCCCCCCCccCh
Confidence 3567789999987632 22 3578897 689999999999875 599999998763
No 22
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.22 E-value=9.8e-07 Score=64.62 Aligned_cols=52 Identities=25% Similarity=0.631 Sum_probs=42.0
Q ss_pred cCCCCeeeEecccCCCCCeeeccCccCCCcceecHHHHHHHHHhc----CCCcccCCCccccc
Q 023042 196 AEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTK----GNKNCEVCGKEVQN 254 (288)
Q Consensus 196 ~ee~~~CRICle~~e~g~~Li~PC~CkGsl~~vH~~CL~kWL~~k----g~~~CEICK~ey~~ 254 (288)
.++...|.||++... ++..+||. |.||..||.+|+... +...|++|+..+..
T Consensus 16 ~~~~~~C~IC~~~~~--~p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 16 IKEEVTCPICLELLK--EPVSADCN-----HSFCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp CCTTTSCTTTCSCCS--SCEECTTS-----CCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred CccCCCCcCCChhhC--cceeCCCC-----CHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 355678999998764 35678887 689999999999884 36899999999763
No 23
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.19 E-value=1.4e-06 Score=65.74 Aligned_cols=53 Identities=21% Similarity=0.508 Sum_probs=44.0
Q ss_pred cccCCCCeeeEecccCCCCCeeecc-CccCCCcceecHHHHHHHHHhcCCCcccCCCcccc
Q 023042 194 EIAEEEAVCRICLDICEEGNTLKME-CSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQ 253 (288)
Q Consensus 194 e~~ee~~~CRICle~~e~g~~Li~P-C~CkGsl~~vH~~CL~kWL~~kg~~~CEICK~ey~ 253 (288)
+..++...|.||++... ++..+| |. |.|+..||.+|+...+...|++|+..+.
T Consensus 8 ~~~~~~~~C~IC~~~~~--~p~~~~~Cg-----H~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 8 DPIPDELLCLICKDIMT--DAVVIPCCG-----NSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CCCCTTTEETTTTEECS--SCEECTTTC-----CEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred ccCCcCCCCCCCChhhc--CceECCCCC-----CHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 33467789999998765 477888 76 6899999999998877789999999973
No 24
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.15 E-value=1e-06 Score=63.02 Aligned_cols=50 Identities=20% Similarity=0.496 Sum_probs=39.9
Q ss_pred CCCCeeeEecccCCCCCeeeccCccCCCcceecHHHHHHHHHhcCCCcccCCCccccc
Q 023042 197 EEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (288)
Q Consensus 197 ee~~~CRICle~~e~g~~Li~PC~CkGsl~~vH~~CL~kWL~~kg~~~CEICK~ey~~ 254 (288)
++...|.||++... ++..++|. |.+|..||.+|+. ++...|++|+..+..
T Consensus 13 ~~~~~C~IC~~~~~--~p~~~~Cg-----H~fC~~Ci~~~~~-~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 13 EDKYKCEKCHLVLC--SPKQTECG-----HRFCESCMAALLS-SSSPKCTACQESIVK 62 (66)
T ss_dssp CCCEECTTTCCEES--SCCCCSSS-----CCCCHHHHHHHHT-TSSCCCTTTCCCCCT
T ss_pred CcCCCCCCCChHhc--CeeECCCC-----CHHHHHHHHHHHH-hCcCCCCCCCcCCCh
Confidence 56788999998764 35567887 6899999999996 345689999998763
No 25
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.15 E-value=1.4e-06 Score=63.44 Aligned_cols=49 Identities=22% Similarity=0.525 Sum_probs=39.9
Q ss_pred CCCCeeeEecccCCCCCeee-ccCccCCCcceecHHHHHHHHHhcCCCcccCCCccccc
Q 023042 197 EEEAVCRICLDICEEGNTLK-MECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (288)
Q Consensus 197 ee~~~CRICle~~e~g~~Li-~PC~CkGsl~~vH~~CL~kWL~~kg~~~CEICK~ey~~ 254 (288)
++...|.||++...+ +.. .+|. |.||..||.+|+.. ...|++|+..+..
T Consensus 13 ~~~~~C~IC~~~~~~--p~~~~~Cg-----H~fC~~Ci~~~~~~--~~~CP~Cr~~~~~ 62 (72)
T 2djb_A 13 TPYILCSICKGYLID--ATTITECL-----HTFCKSCIVRHFYY--SNRCPKCNIVVHQ 62 (72)
T ss_dssp CGGGSCTTTSSCCSS--CEECSSSC-----CEECHHHHHHHHHH--CSSCTTTCCCCCS
T ss_pred CCCCCCCCCChHHHC--cCEECCCC-----CHHHHHHHHHHHHc--CCcCCCcCcccCc
Confidence 567789999987653 454 4997 68999999999977 4689999999874
No 26
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.15 E-value=8.6e-07 Score=61.96 Aligned_cols=50 Identities=24% Similarity=0.630 Sum_probs=39.5
Q ss_pred CCCeeeEecccCCC----CC-eeeccCccCCCcceecHHHHHHHHHhcCCCcccCCCccccc
Q 023042 198 EEAVCRICLDICEE----GN-TLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (288)
Q Consensus 198 e~~~CRICle~~e~----g~-~Li~PC~CkGsl~~vH~~CL~kWL~~kg~~~CEICK~ey~~ 254 (288)
+...|.||++...+ ++ ...++|. |.+|..|+.+|+.. ...|++|+..+..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~--~~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKN--ANTCPTCRKKINH 56 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTS-----CEEEHHHHHHHHHH--CSBCTTTCCBCTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCC-----CchhHHHHHHHHHc--CCCCCCCCccCCc
Confidence 45689999987632 12 3578897 68999999999987 4699999999764
No 27
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.14 E-value=1.5e-06 Score=63.62 Aligned_cols=52 Identities=29% Similarity=0.673 Sum_probs=41.9
Q ss_pred cCCCCeeeEecccCCCCCeeeccCccCCCcceecHHHHHHHHHh----cCCCcccCCCccccc
Q 023042 196 AEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFST----KGNKNCEVCGKEVQN 254 (288)
Q Consensus 196 ~ee~~~CRICle~~e~g~~Li~PC~CkGsl~~vH~~CL~kWL~~----kg~~~CEICK~ey~~ 254 (288)
.++...|.||++... ++..+||. |.||..|+.+|+.. .+...|++|+..+..
T Consensus 16 ~~~~~~C~IC~~~~~--~p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 16 VKEEVTCPICLELLT--QPLSLDCG-----HSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCCCTTTCSCCS--SCBCCSSS-----CCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred ccCCCCCCCCCcccC--CceeCCCC-----CHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 355678999998764 35667887 68999999999987 346799999999874
No 28
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.12 E-value=1.4e-06 Score=66.32 Aligned_cols=53 Identities=19% Similarity=0.572 Sum_probs=40.7
Q ss_pred cCCCCeeeEecccCCCCCeeeccCccCCCcceecHHHHHHHHHhcCCCcccCCCccccc
Q 023042 196 AEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (288)
Q Consensus 196 ~ee~~~CRICle~~e~g~~Li~PC~CkGsl~~vH~~CL~kWL~~kg~~~CEICK~ey~~ 254 (288)
++....|-||++....+.. -. .|. +-||..||.+||+.++..+||+|+.++..
T Consensus 12 ~~~i~~C~IC~~~i~~g~~-C~--~C~---h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 12 PDAVKICNICHSLLIQGQS-CE--TCG---IRMHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp SSSSCBCSSSCCBCSSSEE-CS--SSC---CEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred cCCCCcCcchhhHcccCCc-cC--CCC---chhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 3566789999988765421 12 342 68999999999988767899999998764
No 29
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=98.09 E-value=2.4e-06 Score=62.57 Aligned_cols=51 Identities=16% Similarity=0.406 Sum_probs=42.1
Q ss_pred cCCCCeeeEecccCCCCCeeeccCccCCCcceecHHHHHHHHHhcCCCcccCCCccccc
Q 023042 196 AEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (288)
Q Consensus 196 ~ee~~~CRICle~~e~g~~Li~PC~CkGsl~~vH~~CL~kWL~~kg~~~CEICK~ey~~ 254 (288)
..++-.|.||++... ++.+++|. |.|+..||.+|+.. +...|++|+..+..
T Consensus 5 ~~~~~~C~IC~~~~~--~Pv~~~Cg-----H~fc~~Ci~~~~~~-~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 5 FPEYFRCPISLELMK--DPVIVSTG-----QTYERSSIQKWLDA-GHKTCPKSQETLLH 55 (78)
T ss_dssp CSSSSSCTTTSCCCS--SEEEETTT-----EEEEHHHHHHHHTT-TCCBCTTTCCBCSS
T ss_pred CcccCCCCCcccccc--CCEEcCCC-----CeecHHHHHHHHHH-CcCCCCCCcCCCCh
Confidence 356789999998764 47788987 68999999999974 46799999999763
No 30
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.08 E-value=3e-06 Score=59.88 Aligned_cols=46 Identities=30% Similarity=0.705 Sum_probs=37.2
Q ss_pred cCCCCeeeEecccCCCCCeeeccCccCCCcceecHHHHHHHHHhc-CCCcccCC
Q 023042 196 AEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTK-GNKNCEVC 248 (288)
Q Consensus 196 ~ee~~~CRICle~~e~g~~Li~PC~CkGsl~~vH~~CL~kWL~~k-g~~~CEIC 248 (288)
.+++..|.||++... ++.+++|. |.||..||.+|+... +...||+|
T Consensus 17 ~~~~~~C~IC~~~~~--~p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 17 LQEEVICPICLDILQ--KPVTIDCG-----HNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCBCTTTCSBCS--SCEECTTS-----SEECHHHHHHHHHHCSSCCCCSCC
T ss_pred CccCCCCCcCCchhC--CeEEeCCC-----CcchHHHHHHHHHcCCCCCcCcCC
Confidence 456788999998765 46677887 689999999999853 46789998
No 31
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.08 E-value=5.5e-07 Score=73.78 Aligned_cols=48 Identities=25% Similarity=0.529 Sum_probs=0.0
Q ss_pred CeeeEecccCCC-------------CC--e-eeccCccCCCcceecHHHHHHHHHhcCCCcccCCCccccc
Q 023042 200 AVCRICLDICEE-------------GN--T-LKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (288)
Q Consensus 200 ~~CRICle~~e~-------------g~--~-Li~PC~CkGsl~~vH~~CL~kWL~~kg~~~CEICK~ey~~ 254 (288)
..|.||++.+++ ++ . +..+|. |.||..||.+||..+ ..||+|+.+|.+
T Consensus 49 d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~-----H~FH~~CI~~Wl~~~--~~CP~Cr~~~~~ 112 (117)
T 4a0k_B 49 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCN-----HAFHFHCISRWLKTR--QVCPLDNREWEF 112 (117)
T ss_dssp -----------------------------------------------------------------------
T ss_pred CcCeECChhhcCcChhhhcccccccccccccccCCcC-----ceEcHHHHHHHHHcC--CcCCCCCCeeee
Confidence 579999988643 11 1 235776 789999999999874 689999999764
No 32
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.05 E-value=2.5e-06 Score=58.80 Aligned_cols=46 Identities=30% Similarity=0.805 Sum_probs=36.6
Q ss_pred cCCCCeeeEecccCCCCCeeeccCccCCCcceecHHHHHHHHHh-cCCCcccCC
Q 023042 196 AEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFST-KGNKNCEVC 248 (288)
Q Consensus 196 ~ee~~~CRICle~~e~g~~Li~PC~CkGsl~~vH~~CL~kWL~~-kg~~~CEIC 248 (288)
.++...|.||++...+ +.+++|. |.||..||.+|+.. .+...|++|
T Consensus 12 ~~~~~~C~IC~~~~~~--p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 12 LQVEASCSVCLEYLKE--PVIIECG-----HNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SCCCCBCSSSCCBCSS--CCCCSSC-----CCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cccCCCCccCCcccCc--cEeCCCC-----CccCHHHHHHHHHhcCCCCCCCCC
Confidence 3566789999988753 5668887 68999999999864 456799998
No 33
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=97.98 E-value=1.1e-06 Score=71.90 Aligned_cols=50 Identities=20% Similarity=0.633 Sum_probs=40.9
Q ss_pred CCCeeeEecccCCCCCeeeccCccCCCcceecHHHHHHHHHhcCCCcccCCCccccccc
Q 023042 198 EEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQNLP 256 (288)
Q Consensus 198 e~~~CRICle~~e~g~~Li~PC~CkGsl~~vH~~CL~kWL~~kg~~~CEICK~ey~~vp 256 (288)
++..|.||++... ++..+||+ |.||..||.+|+.. ...||+|+..+...+
T Consensus 52 ~~~~C~iC~~~~~--~~~~~~Cg-----H~fc~~Ci~~~~~~--~~~CP~Cr~~~~~~~ 101 (138)
T 4ayc_A 52 NELQCIICSEYFI--EAVTLNCA-----HSFCSYCINEWMKR--KIECPICRKDIKSKT 101 (138)
T ss_dssp HHSBCTTTCSBCS--SEEEETTS-----CEEEHHHHHHHTTT--CSBCTTTCCBCCCEE
T ss_pred ccCCCcccCcccC--CceECCCC-----CCccHHHHHHHHHc--CCcCCCCCCcCCCCC
Confidence 4567999998764 47788987 68999999999976 468999999987544
No 34
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=97.94 E-value=1.5e-06 Score=63.45 Aligned_cols=51 Identities=27% Similarity=0.662 Sum_probs=41.4
Q ss_pred CCCCeeeEecccCCCCCeeeccCccCCCcceecHHHHHHHHHhc-----CCCcccCCCccccc
Q 023042 197 EEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTK-----GNKNCEVCGKEVQN 254 (288)
Q Consensus 197 ee~~~CRICle~~e~g~~Li~PC~CkGsl~~vH~~CL~kWL~~k-----g~~~CEICK~ey~~ 254 (288)
++...|.||++... ++..+||. |.||..||.+|+... +...|++|+..+..
T Consensus 10 ~~~~~C~IC~~~~~--~p~~l~Cg-----H~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 10 QEEVTCPICLELLT--EPLSLDCG-----HSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCCEETTTTEECS--SCCCCSSS-----CCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred ccCCCCcCCCcccC--CeeECCCC-----CHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 56788999998764 35667887 689999999999863 36799999999763
No 35
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=97.92 E-value=6.9e-06 Score=62.21 Aligned_cols=58 Identities=22% Similarity=0.457 Sum_probs=45.7
Q ss_pred CCCCeeeEecccCCCCCeeeccCccCCCcceecHHHHHHHHHhcCCCcccCCCcccccccce
Q 023042 197 EEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQNLPVT 258 (288)
Q Consensus 197 ee~~~CRICle~~e~g~~Li~PC~CkGsl~~vH~~CL~kWL~~kg~~~CEICK~ey~~vpv~ 258 (288)
+++..|.||++..+..+....||.|. |.|++.||.+|... +...|++|+..|..-++.
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p~~CG---H~fC~~Cl~~~~~~-~~~~CP~CR~~~~~~~~~ 66 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFPCTCG---YQICRFCWHRIRTD-ENGLCPACRKPYPEDPAV 66 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCSSTTS---CCCCHHHHHHHTTS-SCSBCTTTCCBCSSCSSC
T ss_pred ccCCcCCccCccCccccccccccCCC---CCcCHHHHHHHHhc-CCCCCCCCCCccCCCchh
Confidence 56678999999876555667787773 67999999999864 467999999999876543
No 36
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=97.90 E-value=4.8e-06 Score=64.62 Aligned_cols=50 Identities=26% Similarity=0.580 Sum_probs=42.0
Q ss_pred CCCCeeeEecccCCCCCeee-ccCccCCCcceecHHHHHHHHHhcCCCcccCCCccccc
Q 023042 197 EEEAVCRICLDICEEGNTLK-MECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (288)
Q Consensus 197 ee~~~CRICle~~e~g~~Li-~PC~CkGsl~~vH~~CL~kWL~~kg~~~CEICK~ey~~ 254 (288)
+++..|.||++... ++.. .+|. |.||..||.+|+..++ ..||+|+..+..
T Consensus 20 ~~~~~C~IC~~~~~--~p~~~~~Cg-----H~FC~~Ci~~~~~~~~-~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 20 AEVFRCFICMEKLR--DARLCPHCS-----KLCCFSCIRRWLTEQR-AQCPHCRAPLQL 70 (100)
T ss_dssp HHHTBCTTTCSBCS--SEEECTTTC-----CEEEHHHHHHHHHHTC-SBCTTTCCBCCG
T ss_pred CCCCCCccCCcccc--CccccCCCC-----ChhhHHHHHHHHHHCc-CCCCCCCCcCCH
Confidence 56788999998875 4666 8997 6899999999998853 689999999864
No 37
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.85 E-value=5.9e-06 Score=58.77 Aligned_cols=51 Identities=22% Similarity=0.519 Sum_probs=38.7
Q ss_pred CCCeeeEecc-cCCCCC--eeeccCccCCCcceecHHHHHHHHHhcCCCcccCCCccccc
Q 023042 198 EEAVCRICLD-ICEEGN--TLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (288)
Q Consensus 198 e~~~CRICle-~~e~g~--~Li~PC~CkGsl~~vH~~CL~kWL~~kg~~~CEICK~ey~~ 254 (288)
++..|.||++ ...+.. .++++|. |.+|..||.+|+.. +...|++|+..+..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~Cg-----H~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCG-----HTLCESCVDLLFVR-GAGNCPECGTPLRK 55 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTC-----CCEEHHHHHHHHHT-TSSSCTTTCCCCSS
T ss_pred CCCcCCcCCCCccCCCccCeecCCCC-----CHhHHHHHHHHHHc-CCCcCCCCCCcccc
Confidence 3568999998 443222 2467998 68999999999875 45789999999863
No 38
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=97.79 E-value=1.2e-05 Score=64.10 Aligned_cols=50 Identities=22% Similarity=0.480 Sum_probs=41.1
Q ss_pred CCCCeeeEecccCCCCCeeeccCccCCCcceecHHHHHHHHHhcCCCcccCCCccccc
Q 023042 197 EEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (288)
Q Consensus 197 ee~~~CRICle~~e~g~~Li~PC~CkGsl~~vH~~CL~kWL~~kg~~~CEICK~ey~~ 254 (288)
++...|.||++... ++..+||. |.||..||.+|+.. +...||+|+..+..
T Consensus 50 ~~~~~C~IC~~~~~--~p~~~~Cg-----H~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 50 EETFQCICCQELVF--RPITTVCQ-----HNVCKDCLDRSFRA-QVFSCPACRYDLGR 99 (124)
T ss_dssp HHHTBCTTTSSBCS--SEEECTTS-----CEEEHHHHHHHHHT-TCCBCTTTCCBCCT
T ss_pred ccCCCCCcCChHHc--CcEEeeCC-----CcccHHHHHHHHhH-CcCCCCCCCccCCC
Confidence 45578999998765 57778987 68999999999984 45699999999865
No 39
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=97.77 E-value=7.9e-06 Score=64.12 Aligned_cols=55 Identities=22% Similarity=0.534 Sum_probs=43.1
Q ss_pred CCCCeeeEecccCCC----C-CeeeccCccCCCcceecHHHHHHHHHhcCCCcccCCCcccccccce
Q 023042 197 EEEAVCRICLDICEE----G-NTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQNLPVT 258 (288)
Q Consensus 197 ee~~~CRICle~~e~----g-~~Li~PC~CkGsl~~vH~~CL~kWL~~kg~~~CEICK~ey~~vpv~ 258 (288)
.++..|.||++...+ + ....++|. |.||..||.+|+..+ ..||+|+..+....+.
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~~~~l~ 64 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKNA--NTCPTCRKKINHKRYH 64 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTC-----CEEEHHHHHHHHTTC--SBCTTTCCBCTTTCEE
T ss_pred CCCCCCcccChhhhCccccccCeEecCCC-----ChhhHHHHHHHHHhC--CCCCCCCCcCcccccc
Confidence 456789999988632 2 23678998 689999999999764 5999999998865543
No 40
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=97.76 E-value=7.4e-06 Score=62.80 Aligned_cols=49 Identities=20% Similarity=0.545 Sum_probs=39.9
Q ss_pred CCCCeeeEecccCCCCCeeec-cCccCCCcceecHHHHHHHHHhcCCCcccCCCccccc
Q 023042 197 EEEAVCRICLDICEEGNTLKM-ECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (288)
Q Consensus 197 ee~~~CRICle~~e~g~~Li~-PC~CkGsl~~vH~~CL~kWL~~kg~~~CEICK~ey~~ 254 (288)
++...|.||++... ++... +|. |.||..|+.+|+.. ...|++|+..+..
T Consensus 20 ~~~~~C~IC~~~~~--~p~~~~~Cg-----H~fC~~Ci~~~~~~--~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 20 DDLLRCGICFEYFN--IAMIIPQCS-----HNYCSLCIRKFLSY--KTQCPTCCVTVTE 69 (99)
T ss_dssp HHHTBCTTTCSBCS--SEEECTTTC-----CEEEHHHHHHHHTT--CCBCTTTCCBCCG
T ss_pred CCCCCcccCChhhC--CcCEECCCC-----CHhhHHHHHHHHHC--CCCCCCCCCcCCh
Confidence 45678999998765 35555 887 68999999999985 3699999999874
No 41
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=97.74 E-value=1.5e-05 Score=66.46 Aligned_cols=49 Identities=37% Similarity=0.802 Sum_probs=39.6
Q ss_pred CCCCeeeEecccCCCCCeeec-cCccCCCcceecHHHHHHHHHhcCCCcccCCCcccc
Q 023042 197 EEEAVCRICLDICEEGNTLKM-ECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQ 253 (288)
Q Consensus 197 ee~~~CRICle~~e~g~~Li~-PC~CkGsl~~vH~~CL~kWL~~kg~~~CEICK~ey~ 253 (288)
++...|.||++... ++... ||. |.||..||.+|+.. +...||+|+..+.
T Consensus 52 ~~~~~C~IC~~~~~--~p~~~~~Cg-----H~fC~~Ci~~~~~~-~~~~CP~Cr~~~~ 101 (165)
T 2ckl_B 52 HSELMCPICLDMLK--NTMTTKECL-----HRFCADCIITALRS-GNKECPTCRKKLV 101 (165)
T ss_dssp HHHHBCTTTSSBCS--SEEEETTTC-----CEEEHHHHHHHHHT-TCCBCTTTCCBCC
T ss_pred CCCCCCcccChHhh--CcCEeCCCC-----ChhHHHHHHHHHHh-CcCCCCCCCCcCC
Confidence 34568999998865 35554 887 68999999999985 3578999999985
No 42
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=97.71 E-value=1.6e-05 Score=62.02 Aligned_cols=49 Identities=22% Similarity=0.628 Sum_probs=40.6
Q ss_pred CCCCeeeEecccCCCCCeeec-cCccCCCcceecHHHHHHHHHhcCCCcccCCCccccc
Q 023042 197 EEEAVCRICLDICEEGNTLKM-ECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (288)
Q Consensus 197 ee~~~CRICle~~e~g~~Li~-PC~CkGsl~~vH~~CL~kWL~~kg~~~CEICK~ey~~ 254 (288)
++...|.||++... ++... +|. |.||..||.+|+..+ ..|++|+..+..
T Consensus 13 ~~~~~C~IC~~~~~--~p~~~~~Cg-----H~fC~~Ci~~~~~~~--~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 13 NPHLMCVLCGGYFI--DATTIIECL-----HSFCKTCIVRYLETS--KYCPICDVQVHK 62 (108)
T ss_dssp GGGTBCTTTSSBCS--SEEEETTTC-----CEEEHHHHHHHHTSC--SBCTTTCCBSCS
T ss_pred CCcCCCccCChHHh--CcCEeCCCC-----ChhhHHHHHHHHHhC--CcCcCCCccccc
Confidence 56778999998765 46665 997 689999999999864 799999999874
No 43
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.68 E-value=1.6e-05 Score=61.56 Aligned_cols=50 Identities=20% Similarity=0.699 Sum_probs=40.2
Q ss_pred CCCeeeEecccCCCCCeeeccCccCCCcceecHHHHHHHHHhc-CCCcccCCCccccc
Q 023042 198 EEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTK-GNKNCEVCGKEVQN 254 (288)
Q Consensus 198 e~~~CRICle~~e~g~~Li~PC~CkGsl~~vH~~CL~kWL~~k-g~~~CEICK~ey~~ 254 (288)
+...|.||++... ++..+||. |.||..||.+|+..+ +...||+|+..+..
T Consensus 20 ~~~~C~IC~~~~~--~p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 20 KILECPICLELIK--EPVSTKCD-----HIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp HHTSCSSSCCCCS--SCCBCTTS-----CCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred CCCCCcccChhhc--CeEECCCC-----CHHHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 4568999998764 45667887 689999999999864 34689999998764
No 44
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=97.65 E-value=1.5e-05 Score=76.81 Aligned_cols=57 Identities=26% Similarity=0.648 Sum_probs=41.6
Q ss_pred ccCCCCeeeEecccCCCCCee-eccCc---cCCCcceecHHHHHHHHHhcCC---------CcccCCCccccc
Q 023042 195 IAEEEAVCRICLDICEEGNTL-KMECS---CKGALRLVHEECAIRWFSTKGN---------KNCEVCGKEVQN 254 (288)
Q Consensus 195 ~~ee~~~CRICle~~e~g~~L-i~PC~---CkGsl~~vH~~CL~kWL~~kg~---------~~CEICK~ey~~ 254 (288)
.+++...|.||++...+++.+ ...|. |+ +.||..||.+||....+ ..||.|++.+..
T Consensus 304 ~ee~~~ECaICys~~l~~g~lPdk~C~n~~C~---h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 304 EDNEELRCNICFAYRLDGGEVPLVSCDNAKCV---LKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp CCCSCCSCSSSCCSSCTTCCCCCBCCSCTTCC---CCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred cccCCccCcccceeecCCCCCccccccCCccC---CccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 346788999999887653333 34453 53 68999999999986422 589999998763
No 45
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=97.60 E-value=3.2e-05 Score=64.63 Aligned_cols=51 Identities=22% Similarity=0.518 Sum_probs=41.7
Q ss_pred CCCCeeeEecccCCCCCeeeccCccCCCcceecHHHHHHHHHhcCCCcccCCCcccccc
Q 023042 197 EEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQNL 255 (288)
Q Consensus 197 ee~~~CRICle~~e~g~~Li~PC~CkGsl~~vH~~CL~kWL~~kg~~~CEICK~ey~~v 255 (288)
++...|.||++... ++.++||. |.|+..||.+|+.. +...|++|+..+..-
T Consensus 76 ~~~~~C~IC~~~~~--~pv~~~Cg-----H~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 76 EQSFMCVCCQELVY--QPVTTECF-----HNVCKDCLQRSFKA-QVFSCPACRHDLGQN 126 (150)
T ss_dssp HHHTBCTTTSSBCS--SEEECTTS-----CEEEHHHHHHHHHT-TCCBCTTTCCBCCTT
T ss_pred ccCCEeecCChhhc--CCEEcCCC-----CchhHHHHHHHHHh-CCCcCCCCCccCCCC
Confidence 35578999998764 47778997 68999999999985 446899999998754
No 46
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=97.60 E-value=2.5e-05 Score=61.49 Aligned_cols=51 Identities=20% Similarity=0.478 Sum_probs=41.5
Q ss_pred cCCCCeeeEecccCCCCCeeeccCccCCCcceecHHHHHHHHHhcCCCcccCCCccccc
Q 023042 196 AEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (288)
Q Consensus 196 ~ee~~~CRICle~~e~g~~Li~PC~CkGsl~~vH~~CL~kWL~~kg~~~CEICK~ey~~ 254 (288)
.++...|.||++... ++..++|. |.||..||.+|+... ...||+|+..+..
T Consensus 20 ~~~~~~C~IC~~~~~--~p~~~~Cg-----H~fC~~Ci~~~~~~~-~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 20 FVKSISCQICEHILA--DPVETSCK-----HLFCRICILRCLKVM-GSYCPSCRYPCFP 70 (116)
T ss_dssp HHHHTBCTTTCSBCS--SEEECTTS-----CEEEHHHHHHHHHHT-CSBCTTTCCBCCG
T ss_pred ccCCCCCCCCCcHhc--CcEEcCCC-----CcccHHHHHHHHhHC-cCcCCCCCCCCCH
Confidence 345678999998764 46778887 689999999999874 4689999999764
No 47
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=97.54 E-value=5.4e-05 Score=60.07 Aligned_cols=51 Identities=22% Similarity=0.475 Sum_probs=41.3
Q ss_pred cCCCCeeeEecccCCCCCeeeccCccCCCcceecHHHHHHHHHhcCCCcccCCCccccc
Q 023042 196 AEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (288)
Q Consensus 196 ~ee~~~CRICle~~e~g~~Li~PC~CkGsl~~vH~~CL~kWL~~kg~~~CEICK~ey~~ 254 (288)
.++...|.||++... ++..++|. |.|+..||.+|+..++ ..|++|+..+..
T Consensus 15 ~~~~~~C~IC~~~~~--~p~~~~Cg-----H~fC~~Ci~~~~~~~~-~~CP~Cr~~~~~ 65 (118)
T 3hct_A 15 LESKYECPICLMALR--EAVQTPCG-----HRFCKACIIKSIRDAG-HKCPVDNEILLE 65 (118)
T ss_dssp CCGGGBCTTTCSBCS--SEEECTTS-----CEEEHHHHHHHHHHHC-SBCTTTCCBCCG
T ss_pred CCCCCCCCcCChhhc--CeEECCcC-----ChhhHHHHHHHHhhCC-CCCCCCCCCcCH
Confidence 356678999998764 46778887 6899999999998753 489999998764
No 48
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=97.54 E-value=3.6e-05 Score=60.32 Aligned_cols=51 Identities=24% Similarity=0.626 Sum_probs=39.6
Q ss_pred CCCCeeeEecccCCC----CC-eeeccCccCCCcceecHHHHHHHHHhcCCCcccCCCccccc
Q 023042 197 EEEAVCRICLDICEE----GN-TLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (288)
Q Consensus 197 ee~~~CRICle~~e~----g~-~Li~PC~CkGsl~~vH~~CL~kWL~~kg~~~CEICK~ey~~ 254 (288)
++...|.||++...+ +. ....+|. |.+|..|+.+|+..+ ..|++|+..+..
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~~ 125 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKNA--NTCPTCRKKINH 125 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTS-----BEEEHHHHHHHHHHC--SBCTTTCCBCCG
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCC-----ChhhHHHHHHHHHcC--CCCCCCCCcCCh
Confidence 456779999987632 22 3567886 789999999999874 599999999863
No 49
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=97.46 E-value=1.1e-05 Score=63.35 Aligned_cols=50 Identities=20% Similarity=0.540 Sum_probs=40.8
Q ss_pred CCCCeeeEecccCCCCCeeeccCccCCCcceecHHHHHHHHHhcCCCcccCCCccccc
Q 023042 197 EEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (288)
Q Consensus 197 ee~~~CRICle~~e~g~~Li~PC~CkGsl~~vH~~CL~kWL~~kg~~~CEICK~ey~~ 254 (288)
+++..|.||++... ++..++|. |.||..||.+|+.. +...|++|+..+..
T Consensus 13 ~~~~~C~iC~~~~~--~p~~~~Cg-----H~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 13 LSECQCGICMEILV--EPVTLPCN-----HTLCKPCFQSTVEK-ASLCCPFCRRRVSS 62 (115)
T ss_dssp HHHHBCTTTCSBCS--SCEECTTS-----CEECHHHHCCCCCT-TTSBCTTTCCBCHH
T ss_pred CCCCCCccCCcccC--ceeEcCCC-----CHHhHHHHHHHHhH-CcCCCCCCCcccCc
Confidence 45678999998764 46778987 68999999999965 35789999999864
No 50
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=97.41 E-value=9.3e-05 Score=71.59 Aligned_cols=51 Identities=20% Similarity=0.569 Sum_probs=41.3
Q ss_pred CCCCeeeEecccCCCCCeeeccCccCCCcceecHHHHHHHHHhcCCCcccCCCcccccc
Q 023042 197 EEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQNL 255 (288)
Q Consensus 197 ee~~~CRICle~~e~g~~Li~PC~CkGsl~~vH~~CL~kWL~~kg~~~CEICK~ey~~v 255 (288)
.....|.||++... ++...||. |.+|..|+.+|+.. +...||+|+..+...
T Consensus 330 ~~~~~C~ICle~~~--~pv~lpCG-----H~FC~~Ci~~wl~~-~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 330 STFQLCKICAENDK--DVKIEPCG-----HLMCTSCLTSWQES-EGQGCPFCRCEIKGT 380 (389)
T ss_dssp TSSSBCTTTSSSBC--CEEEETTC-----CEECHHHHHHHHHH-TCSBCTTTCCBCCEE
T ss_pred CCCCCCCccCcCCC--CeEEeCCC-----ChhhHHHHHHHHhc-CCCCCCCCCCccCCc
Confidence 34579999998763 57789998 57899999999984 356899999998753
No 51
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=97.35 E-value=8e-05 Score=53.63 Aligned_cols=51 Identities=22% Similarity=0.322 Sum_probs=38.5
Q ss_pred ccCCCCeeeEecccCCCCCeee--ccCccCCCcce-ecHHHHHHHHHhcCCCcccCCCccccc
Q 023042 195 IAEEEAVCRICLDICEEGNTLK--MECSCKGALRL-VHEECAIRWFSTKGNKNCEVCGKEVQN 254 (288)
Q Consensus 195 ~~ee~~~CRICle~~e~g~~Li--~PC~CkGsl~~-vH~~CL~kWL~~kg~~~CEICK~ey~~ 254 (288)
..+....|.||++... +..+ .||+ |. +-..|+.+|.... ..||+|+..+..
T Consensus 3 ~~~~~~~C~IC~~~~~--~~~~~~~pCg-----H~~~C~~C~~~~~~~~--~~CPiCR~~i~~ 56 (63)
T 2vje_B 3 CQNLLKPCSLCEKRPR--DGNIIHGRTG-----HLVTCFHCARRLKKAG--ASCPICKKEIQL 56 (63)
T ss_dssp CGGGGSBCTTTSSSBS--CEEEEETTEE-----EEEECHHHHHHHHHTT--CBCTTTCCBCCE
T ss_pred CCCcCCCCcccCCcCC--CeEEEecCCC-----CHhHHHHHHHHHHHhC--CcCCCcCchhhc
Confidence 3456678999998653 3334 4998 45 7899999998753 689999999864
No 52
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=97.29 E-value=0.00026 Score=53.72 Aligned_cols=50 Identities=6% Similarity=0.103 Sum_probs=41.6
Q ss_pred cCCCCeeeEecccCCCCCeeeccCccCCCcceecHHHHHHHHHhcCCCcccCCCccccc
Q 023042 196 AEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (288)
Q Consensus 196 ~ee~~~CRICle~~e~g~~Li~PC~CkGsl~~vH~~CL~kWL~~kg~~~CEICK~ey~~ 254 (288)
..++-.|-||++-.. ++++++|+ +.|-+.||.+|+.. ..+|++|+..+..
T Consensus 11 ~p~~~~CpI~~~~m~--dPV~~~cG-----htf~r~~I~~~l~~--~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 11 APDEFRDPLMDTLMT--DPVRLPSG-----TVMDRSIILRHLLN--SPTDPFNRQMLTE 60 (85)
T ss_dssp CCTTTBCTTTCSBCS--SEEECTTS-----CEEEHHHHHHHHHH--CSBCTTTCCBCCG
T ss_pred CchheECcccCchhc--CCeECCCC-----CEECHHHHHHHHhc--CCCCCCCcCCCCh
Confidence 356789999998765 58899986 57899999999985 4699999998763
No 53
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=97.21 E-value=0.00057 Score=53.65 Aligned_cols=51 Identities=6% Similarity=0.095 Sum_probs=42.1
Q ss_pred ccCCCCeeeEecccCCCCCeeeccCccCCCcceecHHHHHHHHHhcCCCcccCCCccccc
Q 023042 195 IAEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (288)
Q Consensus 195 ~~ee~~~CRICle~~e~g~~Li~PC~CkGsl~~vH~~CL~kWL~~kg~~~CEICK~ey~~ 254 (288)
...++-.|-||++-.. +++++||. +.|-+.||.+|+.. ..+||+|+..+..
T Consensus 25 ~~p~~~~CpI~~~~m~--dPV~~~cG-----htf~r~~I~~~l~~--~~~cP~~~~~l~~ 75 (100)
T 2kre_A 25 DAPDEFRDPLMDTLMT--DPVRLPSG-----TIMDRSIILRHLLN--SPTDPFNRQTLTE 75 (100)
T ss_dssp SCSTTTBCTTTCSBCS--SEEEETTT-----EEEEHHHHHHHTTS--CSBCSSSCCBCCT
T ss_pred cCcHhhCCcCccCccc--CCeECCCC-----CEEchHHHHHHHHc--CCCCCCCCCCCCh
Confidence 3356789999998764 58999986 57899999999974 5799999999764
No 54
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=97.02 E-value=0.00048 Score=53.92 Aligned_cols=51 Identities=12% Similarity=0.057 Sum_probs=41.4
Q ss_pred cCCCCeeeEecccCCCCCeeeccCccCCCcceecHHHHHHHHHhcCCCcccCCCccccc
Q 023042 196 AEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (288)
Q Consensus 196 ~ee~~~CRICle~~e~g~~Li~PC~CkGsl~~vH~~CL~kWL~~kg~~~CEICK~ey~~ 254 (288)
..++-.|-||++-.. ++++++|. | +.|-+.||.+|+.. ..+||+|+..+..
T Consensus 19 ~p~~~~CpI~~~~m~--dPV~~~cG--~--htf~r~cI~~~l~~--~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 19 ACDEFLDPIMSTLMC--DPVVLPSS--R--VTVDRSTIARHLLS--DQTDPFNRSPLTM 69 (98)
T ss_dssp CCTTTBCTTTCSBCS--SEEECTTT--C--CEEEHHHHHHHTTT--SCBCTTTCSBCCT
T ss_pred CcHhcCCcCcccccc--CCeECCCC--C--eEECHHHHHHHHHh--CCCCCCCCCCCCh
Confidence 356789999998765 58889986 1 47889999999986 4699999999874
No 55
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=97.01 E-value=9.2e-05 Score=54.59 Aligned_cols=46 Identities=26% Similarity=0.601 Sum_probs=37.5
Q ss_pred CCCCeeeEecccCCCCCeeeccCccCCCcce-ecHHHHHHHHHhcCCCcccCCCcccccc
Q 023042 197 EEEAVCRICLDICEEGNTLKMECSCKGALRL-VHEECAIRWFSTKGNKNCEVCGKEVQNL 255 (288)
Q Consensus 197 ee~~~CRICle~~e~g~~Li~PC~CkGsl~~-vH~~CL~kWL~~kg~~~CEICK~ey~~v 255 (288)
+++..|.||++... +++.+||. |. +...|+.+| ..|++|+..+...
T Consensus 22 ~~~~~C~iC~~~~~--~~~~~pCg-----H~~~C~~C~~~~------~~CP~Cr~~i~~~ 68 (74)
T 4ic3_A 22 QEEKLCKICMDRNI--AIVFVPCG-----HLVTCKQCAEAV------DKCPMCYTVITFK 68 (74)
T ss_dssp HHHTBCTTTSSSBC--CEEEETTC-----CBCCCHHHHTTC------SBCTTTCCBCSEE
T ss_pred ccCCCCCCCCCCCC--CEEEcCCC-----ChhHHHHhhhcC------ccCCCcCcCccCc
Confidence 45678999998653 57788998 56 999999999 5899999998743
No 56
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=96.98 E-value=0.00052 Score=59.91 Aligned_cols=50 Identities=6% Similarity=0.023 Sum_probs=40.9
Q ss_pred CCCCeeeEecccCCCCCeeeccCccCCCcceecHHHHHHHHHhcCCCcccCCCccccc
Q 023042 197 EEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (288)
Q Consensus 197 ee~~~CRICle~~e~g~~Li~PC~CkGsl~~vH~~CL~kWL~~kg~~~CEICK~ey~~ 254 (288)
.+.-.|.||++-.. +++++||. |.|-+.||.+|+...+ .+||+|+..+..
T Consensus 206 ~~~~~c~i~~~~~~--dPv~~~~g-----h~f~~~~i~~~~~~~~-~~cP~~~~~~~~ 255 (281)
T 2c2l_A 206 PDYLCGKISFELMR--EPCITPSG-----ITYDRKDIEEHLQRVG-HFNPVTRSPLTQ 255 (281)
T ss_dssp CSTTBCTTTCSBCS--SEEECSSC-----CEEETTHHHHHHHHTC-SSCTTTCCCCCG
T ss_pred CcccCCcCcCCHhc--CCeECCCC-----CEECHHHHHHHHHHCC-CCCcCCCCCCch
Confidence 46678999998764 58999986 5788999999998754 349999998863
No 57
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=96.94 E-value=9.8e-05 Score=58.46 Aligned_cols=46 Identities=20% Similarity=0.503 Sum_probs=38.5
Q ss_pred CCCCeeeEecccCCCCCeeec-cCccCCCcceecHHHHHHHHHhcCCCcccCCCcccc
Q 023042 197 EEEAVCRICLDICEEGNTLKM-ECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQ 253 (288)
Q Consensus 197 ee~~~CRICle~~e~g~~Li~-PC~CkGsl~~vH~~CL~kWL~~kg~~~CEICK~ey~ 253 (288)
++...|.||++... ++..+ +|. |.|+..||.+|+. ..|++|+..+.
T Consensus 20 ~~~~~C~IC~~~~~--~pv~~~~Cg-----H~fC~~Ci~~~~~----~~CP~Cr~~~~ 66 (117)
T 1jm7_B 20 EKLLRCSRCTNILR--EPVCLGGCE-----HIFCSNCVSDCIG----TGCPVCYTPAW 66 (117)
T ss_dssp HHTTSCSSSCSCCS--SCBCCCSSS-----CCBCTTTGGGGTT----TBCSSSCCBCS
T ss_pred hhCCCCCCCChHhh--CccEeCCCC-----CHHHHHHHHHHhc----CCCcCCCCcCc
Confidence 46789999998764 46666 887 6899999999997 58999999985
No 58
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=96.90 E-value=0.00036 Score=50.30 Aligned_cols=49 Identities=27% Similarity=0.428 Sum_probs=36.9
Q ss_pred CCCCeeeEecccCCCCCeeec--cCccCCCcce-ecHHHHHHHHHhcCCCcccCCCccccc
Q 023042 197 EEEAVCRICLDICEEGNTLKM--ECSCKGALRL-VHEECAIRWFSTKGNKNCEVCGKEVQN 254 (288)
Q Consensus 197 ee~~~CRICle~~e~g~~Li~--PC~CkGsl~~-vH~~CL~kWL~~kg~~~CEICK~ey~~ 254 (288)
+++..|.||++... +.... ||+ |. +=..|+.+|... +..||+|+..+..
T Consensus 6 ~~~~~C~IC~~~~~--~~~~~~~pCg-----H~~~C~~C~~~~~~~--~~~CPiCR~~i~~ 57 (64)
T 2vje_A 6 NAIEPCVICQGRPK--NGCIVHGKTG-----HLMACFTCAKKLKKR--NKPCPVCRQPIQM 57 (64)
T ss_dssp GGGSCCTTTSSSCS--CEEEEETTEE-----EEEECHHHHHHHHHT--TCCCTTTCCCCCE
T ss_pred CCcCCCCcCCCCCC--CEEEECCCCC-----ChhhHHHHHHHHHHc--CCcCCCcCcchhc
Confidence 35568999998753 44544 998 45 458999999975 4589999999864
No 59
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=96.85 E-value=0.00015 Score=50.70 Aligned_cols=46 Identities=13% Similarity=0.267 Sum_probs=36.7
Q ss_pred CCCCeeeEecccCCCCCeeeccCccCCCcceecHHHHHHHHHhcCCCcccCCCccccc
Q 023042 197 EEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (288)
Q Consensus 197 ee~~~CRICle~~e~g~~Li~PC~CkGsl~~vH~~CL~kWL~~kg~~~CEICK~ey~~ 254 (288)
++...|.||++.+. ++..+||. |.|+..|+.+| ...|++|+..+..
T Consensus 4 ~~~~~C~IC~~~~~--~p~~l~Cg-----H~fC~~Ci~~~-----~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 4 FQFLRCQQCQAEAK--CPKLLPCL-----HTLCSGCLEAS-----GMQCPICQAPWPL 49 (56)
T ss_dssp CCCSSCSSSCSSCB--CCSCSTTS-----CCSBTTTCSSS-----SSSCSSCCSSSSC
T ss_pred ccCCCceEeCCccC--CeEEcCCC-----CcccHHHHccC-----CCCCCcCCcEeec
Confidence 46678999998765 36778987 57899999884 4689999999764
No 60
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=96.84 E-value=0.00021 Score=59.22 Aligned_cols=51 Identities=22% Similarity=0.505 Sum_probs=40.7
Q ss_pred ccCCCCeeeEecccCCCCCeeeccCccCCCcceecHHHHHHHHHhcCCCcccCCCcccc
Q 023042 195 IAEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQ 253 (288)
Q Consensus 195 ~~ee~~~CRICle~~e~g~~Li~PC~CkGsl~~vH~~CL~kWL~~kg~~~CEICK~ey~ 253 (288)
..++.-.|.||++... +++.++|. |.|+..||.+|+.. +...|++|+.++.
T Consensus 27 ~l~~~~~C~IC~~~~~--~pv~~~Cg-----H~FC~~Ci~~~~~~-~~~~CP~Cr~~~~ 77 (141)
T 3knv_A 27 KLEAKYLCSACRNVLR--RPFQAQCG-----HRYCSFCLASILSS-GPQNCAACVHEGI 77 (141)
T ss_dssp GCCGGGBCTTTCSBCS--SEEECTTS-----CEEEHHHHHHHGGG-SCEECHHHHHTTC
T ss_pred cCCcCcCCCCCChhhc--CcEECCCC-----CccCHHHHHHHHhc-CCCCCCCCCCccc
Confidence 3456789999998764 46778887 68999999999975 3468999999753
No 61
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.59 E-value=0.0021 Score=49.37 Aligned_cols=48 Identities=17% Similarity=0.439 Sum_probs=39.2
Q ss_pred CCCCeeeEecccCCCCCeeecc-CccCCCcceecHHHHHHHHHhc----CCCcccC--CCcc
Q 023042 197 EEEAVCRICLDICEEGNTLKME-CSCKGALRLVHEECAIRWFSTK----GNKNCEV--CGKE 251 (288)
Q Consensus 197 ee~~~CRICle~~e~g~~Li~P-C~CkGsl~~vH~~CL~kWL~~k----g~~~CEI--CK~e 251 (288)
.++-.|.||++.+. +++++| |. |.|-+.||.+|+... +..+||+ |+..
T Consensus 5 ~~~~~CPI~~~~~~--dPV~~~~cG-----h~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 5 SSGFTCPITKEEMK--KPVKNKVCG-----HTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SSCCBCTTTCSBCS--SEEEESSSC-----CEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred CcEeECcCcCchhc--CCEEcCCCC-----CeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 56788999998765 588886 87 689999999999864 3579999 9865
No 62
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=96.58 E-value=0.0012 Score=54.93 Aligned_cols=51 Identities=22% Similarity=0.475 Sum_probs=41.0
Q ss_pred cCCCCeeeEecccCCCCCeeeccCccCCCcceecHHHHHHHHHhcCCCcccCCCccccc
Q 023042 196 AEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (288)
Q Consensus 196 ~ee~~~CRICle~~e~g~~Li~PC~CkGsl~~vH~~CL~kWL~~kg~~~CEICK~ey~~ 254 (288)
.++.-.|.||++... +++.++|. +.|...|+.+|+..++ ..|++|+..+..
T Consensus 15 ~~~~~~C~IC~~~~~--~pv~~~Cg-----H~fC~~Ci~~~~~~~~-~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 15 LESKYECPICLMALR--EAVQTPCG-----HRFCKACIIKSIRDAG-HKCPVDNEILLE 65 (170)
T ss_dssp CCGGGBCTTTCSBCS--SEEECTTS-----CEEEHHHHHHHHHHHC-SBCTTTCCBCCG
T ss_pred CCCCCCCCCCChhhc--CcEECCCC-----CHHHHHHHHHHHHhCC-CCCCCCccCcch
Confidence 356678999998764 46777876 6899999999998753 489999998764
No 63
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.54 E-value=0.0012 Score=48.39 Aligned_cols=50 Identities=22% Similarity=0.446 Sum_probs=37.7
Q ss_pred ccccCCCCeeeEecccCCCCCeeeccCccCCCcce-ecHHHHHHHHHhcCCCcccCCCcccccc
Q 023042 193 EEIAEEEAVCRICLDICEEGNTLKMECSCKGALRL-VHEECAIRWFSTKGNKNCEVCGKEVQNL 255 (288)
Q Consensus 193 ee~~ee~~~CRICle~~e~g~~Li~PC~CkGsl~~-vH~~CL~kWL~~kg~~~CEICK~ey~~v 255 (288)
+...++...|.||++.. .+.+.+||. |+ +-..|+.+ ...|++|+..+..+
T Consensus 9 e~~~~~~~~C~IC~~~~--~~~v~~pCg-----H~~~C~~C~~~------~~~CP~CR~~i~~~ 59 (68)
T 2ea5_A 9 EPSEENSKDCVVCQNGT--VNWVLLPCR-----HTCLCDGCVKY------FQQCPMCRQFVQES 59 (68)
T ss_dssp CCSCCCSSCCSSSSSSC--CCCEETTTT-----BCCSCTTHHHH------CSSCTTTCCCCCCE
T ss_pred cccCCCCCCCCCcCcCC--CCEEEECCC-----ChhhhHHHHhc------CCCCCCCCcchhce
Confidence 33445678899999864 357789998 45 78899883 35899999998753
No 64
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=96.49 E-value=0.0014 Score=58.97 Aligned_cols=55 Identities=20% Similarity=0.574 Sum_probs=41.4
Q ss_pred CCCeeeEecccCCCCCeeeccCc-cCCCcceecHHHHHHHHHhcCCCcccCCCccccccccee
Q 023042 198 EEAVCRICLDICEEGNTLKMECS-CKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQNLPVTL 259 (288)
Q Consensus 198 e~~~CRICle~~e~g~~Li~PC~-CkGsl~~vH~~CL~kWL~~kg~~~CEICK~ey~~vpv~l 259 (288)
....|.||.+-...| .-|. |. ..+|..|+.+|++..+...||.|+.....-.+.+
T Consensus 179 ~i~~C~iC~~iv~~g----~~C~~C~---~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~~~~~ 234 (238)
T 3nw0_A 179 AVKICNICHSLLIQG----QSCETCG---IRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIPKV 234 (238)
T ss_dssp TCCBCTTTCSBCSSC----EECSSSC---CEECHHHHHHHTTTCSSCBCTTTCCBCCSCCCCC
T ss_pred CCCcCcchhhHHhCC----cccCccC---hHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCC
Confidence 478999998776543 1232 43 5799999999999877889999999876554444
No 65
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=96.38 E-value=0.002 Score=56.11 Aligned_cols=50 Identities=6% Similarity=0.018 Sum_probs=41.6
Q ss_pred CCCCeeeEecccCCCCCeeeccCccCCCcceecHHHHHHHHHhcCCCcccCCCccccc
Q 023042 197 EEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (288)
Q Consensus 197 ee~~~CRICle~~e~g~~Li~PC~CkGsl~~vH~~CL~kWL~~kg~~~CEICK~ey~~ 254 (288)
.+.-.|.||++-.. +++++||+ +.|=+.||.+|+...+. +||+|+..+..
T Consensus 104 p~~f~CPI~~elm~--DPV~~~~G-----htfer~~I~~~l~~~~~-tcP~t~~~l~~ 153 (179)
T 2f42_A 104 PDYLCGKISFELMR--EPCITPSG-----ITYDRKDIEEHLQRVGH-FDPVTRSPLTQ 153 (179)
T ss_dssp CGGGBCTTTCSBCS--SEEECTTS-----CEEEHHHHHHHHHHTCS-BCTTTCCBCCG
T ss_pred cHhhcccCccccCC--CCeECCCC-----CEECHHHHHHHHHhCCC-CCCCCcCCCCh
Confidence 56789999998765 58999986 57899999999987554 79999998764
No 66
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.12 E-value=0.0023 Score=46.95 Aligned_cols=45 Identities=27% Similarity=0.630 Sum_probs=35.2
Q ss_pred CCCCeeeEecccCCCCCeeeccCccCCCcce-ecHHHHHHHHHhcCCCcccCCCccccc
Q 023042 197 EEEAVCRICLDICEEGNTLKMECSCKGALRL-VHEECAIRWFSTKGNKNCEVCGKEVQN 254 (288)
Q Consensus 197 ee~~~CRICle~~e~g~~Li~PC~CkGsl~~-vH~~CL~kWL~~kg~~~CEICK~ey~~ 254 (288)
++...|.||++... ++..+||. |. +...|+.++ ..|++|+..+..
T Consensus 23 ~~~~~C~IC~~~~~--~~~~~pCg-----H~~~C~~C~~~~------~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 23 QEEKLCKICMDRNI--AIVFVPCG-----HLVTCKQCAEAV------DKCPMCYTVITF 68 (75)
T ss_dssp HHHHSCSSSCSSCC--CBCCSSSC-----CCCBCHHHHHHC------SBCTTTCCBCCC
T ss_pred CCCCCCCcCCCCCC--CEEEecCC-----CHHHHHHHhhCC------CCCccCCceecC
Confidence 45568999998753 46778997 56 899999643 589999999875
No 67
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=95.91 E-value=0.0044 Score=47.02 Aligned_cols=51 Identities=18% Similarity=0.446 Sum_probs=38.7
Q ss_pred CCCeeeEecccCCCCCeee-ccCccCCCcceecHHHHHHHHHhc---C---CCcccC--CCcccc
Q 023042 198 EEAVCRICLDICEEGNTLK-MECSCKGALRLVHEECAIRWFSTK---G---NKNCEV--CGKEVQ 253 (288)
Q Consensus 198 e~~~CRICle~~e~g~~Li-~PC~CkGsl~~vH~~CL~kWL~~k---g---~~~CEI--CK~ey~ 253 (288)
+...|.||++.....+.+. .+|. |.|...||.+|+..+ + ...|+. |+..+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~Cg-----H~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~ 63 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQ-----CIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGH 63 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTT-----EEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCE
T ss_pred CCcCCcccCcccccccceEcCCCC-----CcccHHHHHHHHHHHhhcCCcccccCccccCCCCCc
Confidence 4668999998875444443 4797 689999999999764 2 368999 999843
No 68
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=95.71 E-value=0.008 Score=55.69 Aligned_cols=51 Identities=18% Similarity=0.392 Sum_probs=41.8
Q ss_pred CCCCeeeEecccCCCCCeeec-cCccCCCcceecHHHHHHHHHhcCCCcccC--CCccccc
Q 023042 197 EEEAVCRICLDICEEGNTLKM-ECSCKGALRLVHEECAIRWFSTKGNKNCEV--CGKEVQN 254 (288)
Q Consensus 197 ee~~~CRICle~~e~g~~Li~-PC~CkGsl~~vH~~CL~kWL~~kg~~~CEI--CK~ey~~ 254 (288)
..+..|.||++... +++.. .|+ |.|=+.||.+|+...+...||+ |+..+..
T Consensus 179 ~~el~CPIcl~~f~--DPVts~~CG-----HsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~ 232 (267)
T 3htk_C 179 KIELTCPITCKPYE--APLISRKCN-----HVFDRDGIQNYLQGYTTRDCPQAACSQVVSM 232 (267)
T ss_dssp BCCSBCTTTSSBCS--SEEEESSSC-----CEEEHHHHHHHSTTCSCEECSGGGCSCEECG
T ss_pred ceeeECcCccCccc--CCeeeCCCC-----CcccHHHHHHHHHhCCCCCCCcccccCcCch
Confidence 56689999998764 57764 787 6789999999998777789999 9998764
No 69
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=95.23 E-value=0.003 Score=59.75 Aligned_cols=45 Identities=29% Similarity=0.760 Sum_probs=37.4
Q ss_pred CCCCeeeEecccCCCCCeeeccCccCCCcce-ecHHHHHHHHHhcCCCcccCCCccccc
Q 023042 197 EEEAVCRICLDICEEGNTLKMECSCKGALRL-VHEECAIRWFSTKGNKNCEVCGKEVQN 254 (288)
Q Consensus 197 ee~~~CRICle~~e~g~~Li~PC~CkGsl~~-vH~~CL~kWL~~kg~~~CEICK~ey~~ 254 (288)
+++..|.||++... +++.+||. |. +...|+.+| ..||+|+..+..
T Consensus 293 ~~~~~C~IC~~~~~--~~v~lpCg-----H~~fC~~C~~~~------~~CP~CR~~i~~ 338 (345)
T 3t6p_A 293 QEERTCKVCMDKEV--SVVFIPCG-----HLVVCQECAPSL------RKCPICRGIIKG 338 (345)
T ss_dssp HTTCBCTTTSSSBC--CEEEETTC-----CEEECTTTGGGC------SBCTTTCCBCCE
T ss_pred cCCCCCCccCCcCC--ceEEcCCC-----ChhHhHHHHhcC------CcCCCCCCCccC
Confidence 45689999998754 57778998 56 999999998 589999999874
No 70
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=94.57 E-value=0.0056 Score=45.84 Aligned_cols=46 Identities=26% Similarity=0.623 Sum_probs=35.9
Q ss_pred CCCCeeeEecccCCCCCeeeccCccCCCcce-ecHHHHHHHHHhcCCCcccCCCcccccc
Q 023042 197 EEEAVCRICLDICEEGNTLKMECSCKGALRL-VHEECAIRWFSTKGNKNCEVCGKEVQNL 255 (288)
Q Consensus 197 ee~~~CRICle~~e~g~~Li~PC~CkGsl~~-vH~~CL~kWL~~kg~~~CEICK~ey~~v 255 (288)
+++..|.||++... +.+.+||. |. +=..|+.+| ..|++|+..+...
T Consensus 16 ~~~~~C~IC~~~~~--~~v~~pCg-----H~~~C~~C~~~~------~~CP~Cr~~i~~~ 62 (79)
T 2yho_A 16 KEAMLCMVCCEEEI--NSTFCPCG-----HTVCCESCAAQL------QSCPVCRSRVEHV 62 (79)
T ss_dssp HHHTBCTTTSSSBC--CEEEETTC-----BCCBCHHHHTTC------SBCTTTCCBCCEE
T ss_pred CCCCEeEEeCcccC--cEEEECCC-----CHHHHHHHHHhc------CcCCCCCchhhCe
Confidence 35578999998643 57789998 34 668999887 3899999998854
No 71
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=94.48 E-value=0.023 Score=40.88 Aligned_cols=46 Identities=9% Similarity=0.197 Sum_probs=36.7
Q ss_pred CeeeEecccCCCCCeeec-cCccCCCcceecHHHHHHHHHhcCCCcccCCCccccc
Q 023042 200 AVCRICLDICEEGNTLKM-ECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (288)
Q Consensus 200 ~~CRICle~~e~g~~Li~-PC~CkGsl~~vH~~CL~kWL~~kg~~~CEICK~ey~~ 254 (288)
-.|.||++... ++++. +|. +.+=+.|+++||...+ +|++++..+..
T Consensus 4 ~~CpIs~~~m~--dPV~~~~sG-----~~yer~~I~~~l~~~~--~cP~t~~~L~~ 50 (61)
T 2bay_A 4 MLCAISGKVPR--RPVLSPKSR-----TIFEKSLLEQYVKDTG--NDPITNEPLSI 50 (61)
T ss_dssp CCCTTTCSCCS--SEEEETTTT-----EEEEHHHHHHHHHHHS--BCTTTCCBCCG
T ss_pred EEecCCCCCCC--CCEEeCCCC-----cEEcHHHHHHHHHhCC--CCcCCcCCCCh
Confidence 57999988765 57777 666 5788999999998754 69999988753
No 72
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=93.03 E-value=0.038 Score=40.78 Aligned_cols=57 Identities=19% Similarity=0.391 Sum_probs=38.1
Q ss_pred ccccCCCCeeeEecccCCCCCeeeccCccCCCcceecHHHHHHHHHh--cCCCcccCCCccccccc
Q 023042 193 EEIAEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFST--KGNKNCEVCGKEVQNLP 256 (288)
Q Consensus 193 ee~~ee~~~CRICle~~e~g~~Li~PC~CkGsl~~vH~~CL~kWL~~--kg~~~CEICK~ey~~vp 256 (288)
++.+.....|.||.+. ++ |+ -|. +=-+.||..||.-.|.. .+.+.|+.|...-...|
T Consensus 6 ~~~~~~~~~C~vC~~~---~~-ll-~Cd--~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~~p~P 64 (66)
T 2lri_C 6 QQNLAPGARCGVCGDG---TD-VL-RCT--HCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDVTPAP 64 (66)
T ss_dssp TTCCCTTCCCTTTSCC---TT-CE-ECS--SSCCEECHHHHCTTTCCCCSSSCCCTTTTTCCCCCC
T ss_pred ccCCCCCCCcCCCCCC---Ce-EE-ECC--CCCCceecccCCCccCcCCCCCEECccccCCCccCC
Confidence 4455667789999753 33 32 222 22368999999888765 47899999987654443
No 73
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=87.57 E-value=0.5 Score=37.55 Aligned_cols=51 Identities=25% Similarity=0.478 Sum_probs=37.1
Q ss_pred CCCeeeEecccC---CCCCeee--ccCccCCCcceecHHHHHHHHHhcCCCcccCCCccccc
Q 023042 198 EEAVCRICLDIC---EEGNTLK--MECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (288)
Q Consensus 198 e~~~CRICle~~---e~g~~Li--~PC~CkGsl~~vH~~CL~kWL~~kg~~~CEICK~ey~~ 254 (288)
...+|.||-+.. ..|+.++ ..|. --|=+.|++-=.+. ++..|+.||.+|.-
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~-----FPvCrpCyEYErke-G~q~CpqCktrYkr 70 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECG-----FPACRPCYEYERRE-GTQNCPQCKTRYKR 70 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSC-----CCCCHHHHHHHHHT-SCSSCTTTCCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccC-----ChhhHHHHHHHHhc-cCccccccCCcccc
Confidence 568999998763 3466664 4454 23778998766554 78999999999984
No 74
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=85.15 E-value=0.15 Score=39.38 Aligned_cols=54 Identities=30% Similarity=0.495 Sum_probs=34.5
Q ss_pred cCCCCeeeEecccCC-CCCeeeccCccCCCcceecHHHHHHHHHhcCCCcccCCCccc
Q 023042 196 AEEEAVCRICLDICE-EGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEV 252 (288)
Q Consensus 196 ~ee~~~CRICle~~e-~g~~Li~PC~CkGsl~~vH~~CL~kWL~~kg~~~CEICK~ey 252 (288)
.++...|.||..... +++.|+ -|. +--..||..|+.-=+.-.+.+.|+.|....
T Consensus 22 ~~~~~~C~vC~~~~s~~~~~ll-~CD--~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~ 76 (88)
T 2l43_A 22 IDEDAVCSICMDGESQNSNVIL-FCD--MCNLAVHQECYGVPYIPEGQWLCRHCLQSR 76 (88)
T ss_dssp CCCCCCCSSCCSSSSCSEEEEE-ECS--SSCCCCCHHHHTCSSCCSSCCCCHHHHHHT
T ss_pred CCCCCcCCcCCCCCCCCCCCEE-ECC--CCCchhhcccCCCCccCCCceECccccCcc
Confidence 356789999987652 223333 332 222478999986433345789999997653
No 75
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=83.61 E-value=0.21 Score=39.21 Aligned_cols=52 Identities=23% Similarity=0.494 Sum_probs=33.6
Q ss_pred ccccCCCCeeeEecccCCCCCeee--ccCccCCCcceecHHHHHHHHHh--cCCCcccCCCcc
Q 023042 193 EEIAEEEAVCRICLDICEEGNTLK--MECSCKGALRLVHEECAIRWFST--KGNKNCEVCGKE 251 (288)
Q Consensus 193 ee~~ee~~~CRICle~~e~g~~Li--~PC~CkGsl~~vH~~CL~kWL~~--kg~~~CEICK~e 251 (288)
+..+++...| ||..... + .++ --|.|.. .+||..|+. |.. .+.+.|+.|...
T Consensus 30 ~~d~~e~~yC-iC~~~~~-g-~MI~CD~~dC~~--~WfH~~CVg--l~~~p~g~W~Cp~C~~~ 85 (91)
T 1weu_A 30 PVDPNEPTYC-LCHQVSY-G-EMIGCDNPDCSI--EWFHFACVG--LTTKPRGKWFCPRCSQE 85 (91)
T ss_dssp CCCSCCCBCS-TTCCBCC-S-CCCCCSCSSCSC--CCCCSTTTT--CSSCCCSSCCCTTTCCC
T ss_pred CcCCCCCcEE-ECCCCCC-C-CEeEecCCCCCC--CCEecccCC--cCcCCCCCEECcCccCc
Confidence 3344567788 9977543 3 333 2344642 589999987 433 368999999765
No 76
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=80.20 E-value=0.078 Score=40.85 Aligned_cols=54 Identities=22% Similarity=0.489 Sum_probs=35.9
Q ss_pred CCCCeeeEecccCCC-CCeeeccCccCCCcceecHHHHHHHHH------hcCCCcccCCCcccc
Q 023042 197 EEEAVCRICLDICEE-GNTLKMECSCKGALRLVHEECAIRWFS------TKGNKNCEVCGKEVQ 253 (288)
Q Consensus 197 ee~~~CRICle~~e~-g~~Li~PC~CkGsl~~vH~~CL~kWL~------~kg~~~CEICK~ey~ 253 (288)
++...|.||...... ++.|+.==.|. ..+|..||.-=|. -.+.+.|..|.....
T Consensus 14 e~~~~C~vC~~~~~~~~~~ll~CD~C~---~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~ 74 (88)
T 1wev_A 14 EMGLACVVCRQMTVASGNQLVECQECH---NLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMK 74 (88)
T ss_dssp HHCCSCSSSCCCCCCTTCCEEECSSSC---CEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHC
T ss_pred CCCCcCCCCCCCCCCCCCceEECCCCC---CeEcCccCCCcccccccCCCCCCeeCccccchhh
Confidence 467899999976532 34444211232 5889999876543 247899999977654
No 77
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=79.56 E-value=0.28 Score=36.53 Aligned_cols=52 Identities=31% Similarity=0.542 Sum_probs=33.0
Q ss_pred CCCCeeeEecccC-CCCCeeeccCccCCCcceecHHHHHHHHHhcCCCcccCCCcc
Q 023042 197 EEEAVCRICLDIC-EEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKE 251 (288)
Q Consensus 197 ee~~~CRICle~~-e~g~~Li~PC~CkGsl~~vH~~CL~kWL~~kg~~~CEICK~e 251 (288)
.+...|.||.... ++++.|+ -|. +=-..||..|+.-=..-.+.+.|+.|...
T Consensus 14 ~~~~~C~vC~~~~s~~~~~ll-~CD--~C~~~~H~~Cl~~~~vP~g~W~C~~C~~~ 66 (71)
T 2ku3_A 14 DEDAVCSICMDGESQNSNVIL-FCD--MCNLAVHQECYGVPYIPEGQWLCRHCLQS 66 (71)
T ss_dssp CSSCSCSSSCCCCCCSSSCEE-ECS--SSCCEEEHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCEE-ECC--CCCCccccccCCCCcCCCCCcCCccCcCc
Confidence 4667899998765 2333343 222 22258999998643334578999999654
No 78
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=79.36 E-value=0.37 Score=35.36 Aligned_cols=53 Identities=15% Similarity=0.275 Sum_probs=33.3
Q ss_pred cCCCCeeeEecccCCCCCeeeccCccCCCcceecHHHHHHHHHhc--CCCcccCCCccc
Q 023042 196 AEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTK--GNKNCEVCGKEV 252 (288)
Q Consensus 196 ~ee~~~CRICle~~e~g~~Li~PC~CkGsl~~vH~~CL~kWL~~k--g~~~CEICK~ey 252 (288)
.++...|.||....+ ++.++. | .+=-.++|..||.--.... +.+.|+.|....
T Consensus 15 ~~~~~~C~~C~~~~~-~~~mi~-C--D~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~ 69 (75)
T 2k16_A 15 GNQIWICPGCNKPDD-GSPMIG-C--DDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKI 69 (75)
T ss_dssp SCEEECBTTTTBCCS-SCCEEE-C--SSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHH
T ss_pred CCCCcCCCCCCCCCC-CCCEEE-c--CCCCcccccccCCCCccCCCCCCEEChhccCch
Confidence 345667999976654 333432 2 2223699999986443322 578999997654
No 79
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=79.20 E-value=0.2 Score=43.41 Aligned_cols=50 Identities=22% Similarity=0.518 Sum_probs=33.6
Q ss_pred cCCCCeeeEecccCCCCCeeeccCccCCCcceecHHHHHHHHHh--cCCCcccCCCccc
Q 023042 196 AEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFST--KGNKNCEVCGKEV 252 (288)
Q Consensus 196 ~ee~~~CRICle~~e~g~~Li~PC~CkGsl~~vH~~CL~kWL~~--kg~~~CEICK~ey 252 (288)
++.+..|.+|..+ |+ ++ -| .+--..+|..||...+.. .|.+.|+.|...-
T Consensus 4 d~~~~~C~~C~~~---g~-ll-~C--d~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 4 DPNEDWCAVCQNG---GD-LL-CC--EKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp CSSCSSBTTTCCC---EE-EE-EC--SSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCCCC---Cc-eE-Ec--CCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 3466789999754 22 32 23 333468999998766543 4789999998754
No 80
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=77.01 E-value=0.4 Score=35.61 Aligned_cols=52 Identities=23% Similarity=0.501 Sum_probs=33.4
Q ss_pred ccccCCCCeeeEecccCCCCCeee--ccCccCCCcceecHHHHHHHHHh--cCCCcccCCCcc
Q 023042 193 EEIAEEEAVCRICLDICEEGNTLK--MECSCKGALRLVHEECAIRWFST--KGNKNCEVCGKE 251 (288)
Q Consensus 193 ee~~ee~~~CRICle~~e~g~~Li--~PC~CkGsl~~vH~~CL~kWL~~--kg~~~CEICK~e 251 (288)
+..+++...| ||..... |+ ++ --|.|.. .+||..|+. |.. .+.+.|+.|...
T Consensus 10 ~~d~~~~~~C-~C~~~~~-g~-MI~CD~~~C~~--~wfH~~Cvg--l~~~p~g~w~Cp~C~~~ 65 (71)
T 1wen_A 10 PVDPNEPTYC-LCHQVSY-GE-MIGCDNPDCSI--EWFHFACVG--LTTKPRGKWFCPRCSQE 65 (71)
T ss_dssp CCCTTSCCCS-TTCCCSC-SS-EECCSCSSCSC--CCEETTTTT--CSSCCSSCCCCTTTSSC
T ss_pred ccCCCCCCEE-ECCCCCC-CC-EeEeeCCCCCC--ccEecccCC--cCcCCCCCEECCCCCcc
Confidence 3344567788 8976543 33 44 2344642 489999987 433 368999999765
No 81
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=72.52 E-value=0.9 Score=32.48 Aligned_cols=49 Identities=24% Similarity=0.554 Sum_probs=32.2
Q ss_pred cCCCCeeeEecccCCCCCeeeccCccCCCcceecHHHHHHHHHh--cCCCcccCCCcc
Q 023042 196 AEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFST--KGNKNCEVCGKE 251 (288)
Q Consensus 196 ~ee~~~CRICle~~e~g~~Li~PC~CkGsl~~vH~~CL~kWL~~--kg~~~CEICK~e 251 (288)
.+....|.||... ++.+. | .+=-..+|..||.-=+.. ++.+.|+.|..+
T Consensus 8 ~~~~~~C~vC~~~---g~ll~--C--D~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 8 TDHQDYCEVCQQG---GEIIL--C--DTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp SCCCSSCTTTSCC---SSEEE--C--SSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCCCccCCCC---CcEEE--C--CCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 3566789999763 33332 2 222368999998864432 478999999754
No 82
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=71.89 E-value=0.6 Score=38.96 Aligned_cols=52 Identities=19% Similarity=0.298 Sum_probs=33.8
Q ss_pred CCCCeeeEecccCCCCCeeeccCccCCCcceecHHHHHHHHH---hcCCCcccCCCccc
Q 023042 197 EEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFS---TKGNKNCEVCGKEV 252 (288)
Q Consensus 197 ee~~~CRICle~~e~g~~Li~PC~CkGsl~~vH~~CL~kWL~---~kg~~~CEICK~ey 252 (288)
++...| ||....+++..++.=-.|. .++|..|+.--.. ..+.+.|+.|+..-
T Consensus 6 ~~~~~C-~C~~~~~~~~~mi~Cd~C~---~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~~ 60 (174)
T 2ri7_A 6 DTKLYC-ICKTPEDESKFYIGCDRCQ---NWYHGRCVGILQSEAELIDEYVCPQCQSTE 60 (174)
T ss_dssp -CCEET-TTTEECCTTSCEEECTTTC---CEEEHHHHTCCHHHHTTCSSCCCHHHHHHH
T ss_pred CCCcEe-eCCCCCCCCCCEeECCCCC---chhChhhcCCchhhccCccCeecCCCcchh
Confidence 567789 9987765444455322443 7999999853222 24578999998653
No 83
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=71.42 E-value=3.4 Score=34.25 Aligned_cols=49 Identities=20% Similarity=0.421 Sum_probs=32.4
Q ss_pred cCCCCeeeEecccCCCCCeeeccCccCCCcceecHHHHHHH------HH---hcCCCcccCCCcc
Q 023042 196 AEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRW------FS---TKGNKNCEVCGKE 251 (288)
Q Consensus 196 ~ee~~~CRICle~~e~g~~Li~PC~CkGsl~~vH~~CL~kW------L~---~kg~~~CEICK~e 251 (288)
+..+..|+||.++ ..|+ - |.+--+.||..||..= -. ..+.+.|.+|...
T Consensus 54 Dg~~~~C~vC~dG----G~Ll-c--Cd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 54 DGMDEQCRWCAEG----GNLI-C--CDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp TSCBSSCTTTCCC----SEEE-E--CSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred CCCCCcCeecCCC----CeeE-e--cCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 3456689999764 2333 1 2233478999999974 22 3578999999543
No 84
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=70.35 E-value=0.31 Score=38.14 Aligned_cols=51 Identities=24% Similarity=0.501 Sum_probs=31.7
Q ss_pred ccccCCCCeeeEecccCCCCCeee--ccCccCCCcceecHHHHHHHHHh--cCCCcccC-CCc
Q 023042 193 EEIAEEEAVCRICLDICEEGNTLK--MECSCKGALRLVHEECAIRWFST--KGNKNCEV-CGK 250 (288)
Q Consensus 193 ee~~ee~~~CRICle~~e~g~~Li--~PC~CkGsl~~vH~~CL~kWL~~--kg~~~CEI-CK~ 250 (288)
++.+++...| ||..... |+ ++ --|.|.. .+||..|+. |.. .+.+.|+. |..
T Consensus 20 ~~~~~~~~yC-iC~~~~~-g~-MI~CD~c~C~~--eWfH~~CVg--l~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 20 GNNNQEEVYC-FCRNVSY-GP-MVACDNPACPF--EWFHYGCVG--LKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp ----CCSCCS-TTTCCCS-SS-EECCCSSSCSC--SCEETTTSS--CSSCTTSCCCSSHHHHH
T ss_pred CCCCCCCcEE-EeCCCCC-CC-EEEecCCCCcc--ccCcCccCC--CCcCCCCCccCChhhcc
Confidence 3445677888 9976533 33 44 3466753 589999986 322 36899999 963
No 85
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=70.34 E-value=1.2 Score=30.24 Aligned_cols=47 Identities=21% Similarity=0.492 Sum_probs=28.7
Q ss_pred CeeeEecccCCCCCeeeccCccCCCcceecHHHHHHHHHh--cCCCcccCCCc
Q 023042 200 AVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFST--KGNKNCEVCGK 250 (288)
Q Consensus 200 ~~CRICle~~e~g~~Li~PC~CkGsl~~vH~~CL~kWL~~--kg~~~CEICK~ 250 (288)
+.|.||....++++.+. |. +=-..+|..||.-=+.. ++.+.|+.|..
T Consensus 1 a~C~vC~~~~~~~~ll~--Cd--~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 1 ARCKVCRKKGEDDKLIL--CD--ECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCCTTTCCSSCCSCCEE--CT--TTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCCEEE--CC--CCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 36889987654433332 21 22368999998532222 36789999964
No 86
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=69.34 E-value=0.73 Score=36.05 Aligned_cols=38 Identities=16% Similarity=0.147 Sum_probs=24.4
Q ss_pred CCCCeeeEecccCCCCCeeeccCccCCCcceecHHHHHHHHH
Q 023042 197 EEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFS 238 (288)
Q Consensus 197 ee~~~CRICle~~e~g~~Li~PC~CkGsl~~vH~~CL~kWL~ 238 (288)
.++.+|.||.+..+.++ |+ -| .+=-+.+|..||.-++.
T Consensus 5 ~~~~~C~~C~~~g~~~~-ll-~C--~~C~~~~H~~Cl~~~~~ 42 (111)
T 2ysm_A 5 SSGANCAVCDSPGDLLD-QF-FC--TTCGQHYHGMCLDIAVT 42 (111)
T ss_dssp CCCSCBTTTCCCCCTTT-SE-EC--SSSCCEECTTTTTCCCC
T ss_pred CCCCCCcCCCCCCCCcC-Ce-EC--CCCCCCcChHHhCCccc
Confidence 56789999987654322 22 22 22236899999987664
No 87
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=69.13 E-value=2.3 Score=31.56 Aligned_cols=53 Identities=15% Similarity=0.211 Sum_probs=33.8
Q ss_pred cCCCCeeeEecccCCCCCeeeccCccCCCcceecHHHHHHHHHh---cCCCcccCCCccc
Q 023042 196 AEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFST---KGNKNCEVCGKEV 252 (288)
Q Consensus 196 ~ee~~~CRICle~~e~g~~Li~PC~CkGsl~~vH~~CL~kWL~~---kg~~~CEICK~ey 252 (288)
+++...| ||....+++..+|.=-.|. .++|..|+.-=... -....|+.|....
T Consensus 9 ~~~~~~C-~C~~~~d~~~~MIqCd~C~---~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 9 ALVPVYC-LCRQPYNVNHFMIECGLCQ---DWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCCCCS-TTSCSCCSSSCEEEBTTTC---CEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred cCCccEE-EcCCccCCCCceEEcCCCC---CcEEeeecCcccccccCCCeEECCCccccc
Confidence 3566777 8987665444555322353 69999998532221 2568999998764
No 88
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=68.05 E-value=0.28 Score=38.01 Aligned_cols=52 Identities=21% Similarity=0.408 Sum_probs=32.4
Q ss_pred ccCCCCeeeEecccCCCCCeeeccC-ccCCCcceecHHHHHHHH--HhcCCCcccCCCcc
Q 023042 195 IAEEEAVCRICLDICEEGNTLKMEC-SCKGALRLVHEECAIRWF--STKGNKNCEVCGKE 251 (288)
Q Consensus 195 ~~ee~~~CRICle~~e~g~~Li~PC-~CkGsl~~vH~~CL~kWL--~~kg~~~CEICK~e 251 (288)
...+...|.||....+++. |+ -| .|. ..+|..||.-=| .-++.+.|+.|...
T Consensus 12 ~~~~~~~C~vC~~~~~~~~-ll-~CD~C~---~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 12 QFIDSYICQVCSRGDEDDK-LL-FCDGCD---DNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCCCSSSCCSGGGGG-CE-ECTTTC---CEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred hccCCCCCccCCCcCCCCC-EE-EcCCCC---chhccccCCCCcccCCCCCcCCccCcCc
Confidence 3456678999987654322 22 22 233 589999985211 12467899999764
No 89
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=67.88 E-value=0.32 Score=34.89 Aligned_cols=48 Identities=23% Similarity=0.550 Sum_probs=29.7
Q ss_pred cCCCCeeeEecccCCCCCeeec--cCccCCCcceecHHHHHHHHHh--cCCCcccCCCc
Q 023042 196 AEEEAVCRICLDICEEGNTLKM--ECSCKGALRLVHEECAIRWFST--KGNKNCEVCGK 250 (288)
Q Consensus 196 ~ee~~~CRICle~~e~g~~Li~--PC~CkGsl~~vH~~CL~kWL~~--kg~~~CEICK~ 250 (288)
+++...| ||..... | .++. -|.|.. .++|..|+. |.. .+.+.|+.|..
T Consensus 7 ~~e~~~C-~C~~~~~-g-~mi~CD~cdC~~--~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 7 PNEPTYC-LCHQVSY-G-EMIGCDNPDCSI--EWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp --CCEET-TTTEECC-S-EEEECSCTTCSS--CEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCCCEE-ECCCcCC-C-CEEEeCCCCCCC--ceEehhcCC--CCcCCCCCEECcCccC
Confidence 4566777 8976543 3 3442 344541 589999987 443 36789998854
No 90
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=67.60 E-value=0.66 Score=39.29 Aligned_cols=49 Identities=22% Similarity=0.580 Sum_probs=32.5
Q ss_pred CCCCeeeEecccCCCCCeeeccCccCCCcceecHHHHHHHHHh--cCCCcccCCCccc
Q 023042 197 EEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFST--KGNKNCEVCGKEV 252 (288)
Q Consensus 197 ee~~~CRICle~~e~g~~Li~PC~CkGsl~~vH~~CL~kWL~~--kg~~~CEICK~ey 252 (288)
+++..|.+|..+ |+ + +-| .+--..+|..||..-+.. ++.+.|+.|+..-
T Consensus 2 ~~~~~C~~C~~~---g~-l-l~C--d~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 2 PNEDWCAVCQNG---GE-L-LCC--EKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp CSCSSCTTTCCC---SS-C-EEC--SSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCccccCCCC---Ce-e-eec--CCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 355779999754 33 2 222 223368999998766543 4689999998753
No 91
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=66.52 E-value=2 Score=34.48 Aligned_cols=46 Identities=20% Similarity=0.463 Sum_probs=33.6
Q ss_pred CCCeeeEecccCCCCCeeeccCccCCCcceecHHHHHHHHHhcCCCcccCCCcccc
Q 023042 198 EEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQ 253 (288)
Q Consensus 198 e~~~CRICle~~e~g~~Li~PC~CkGsl~~vH~~CL~kWL~~kg~~~CEICK~ey~ 253 (288)
....|..|+.... -|| .|+ -||+=..||..-|..+ ..|+||++.+.
T Consensus 27 G~~nCKsCWf~~k---~LV-~C~----dHYLCl~CLtlmL~~S--drCpIC~~pLP 72 (99)
T 2ko5_A 27 GPQFCKSCWFENK---GLV-ECN----NHYLCLNCLTLLLSVS--NRCPICKMPLP 72 (99)
T ss_dssp CCCCCCSSCSCCS---SEE-ECS----SCEEEHHHHHHTCSSS--SEETTTTEECC
T ss_pred CcccChhhccccC---Cee-eec----chhhHHHHHHHHHhhc--cCCcccCCcCC
Confidence 3467999987543 355 343 2799999999888765 59999999965
No 92
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=66.52 E-value=3.6 Score=34.56 Aligned_cols=48 Identities=23% Similarity=0.522 Sum_probs=32.5
Q ss_pred CCCCeeeEecccCCCCCeeeccCccCCCcceecHHHHHHHHH---------hcCCCcccCCCcc
Q 023042 197 EEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFS---------TKGNKNCEVCGKE 251 (288)
Q Consensus 197 ee~~~CRICle~~e~g~~Li~PC~CkGsl~~vH~~CL~kWL~---------~kg~~~CEICK~e 251 (288)
..+..|+||.++ |+.+. | .+=-+.||..||..=+. ..+.+.|.+|...
T Consensus 61 g~~d~C~vC~~G---G~Llc--C--D~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~ 117 (142)
T 2lbm_A 61 GMDEQCRWCAEG---GNLIC--C--DFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPE 117 (142)
T ss_dssp SCBCSCSSSCCC---SSEEE--C--SSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCC
T ss_pred CCCCeecccCCC---CcEEe--C--CCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCc
Confidence 456799999864 33222 2 22236899999996552 3578999999753
No 93
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=62.92 E-value=0.53 Score=33.60 Aligned_cols=53 Identities=19% Similarity=0.370 Sum_probs=33.4
Q ss_pred cCCCCeeeEecccCC-CCCeeeccCccCCCcceecHHHHHHHHH-----hcCCCcccCCCcc
Q 023042 196 AEEEAVCRICLDICE-EGNTLKMECSCKGALRLVHEECAIRWFS-----TKGNKNCEVCGKE 251 (288)
Q Consensus 196 ~ee~~~CRICle~~e-~g~~Li~PC~CkGsl~~vH~~CL~kWL~-----~kg~~~CEICK~e 251 (288)
++++..|.||..... .++.|+ -|. +=-..||..|+.-=+. -.+.+.|..|...
T Consensus 3 ~~~~~~C~vC~~~~~~~~~~ll-~Cd--~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 3 SGSSGVCTICQEEYSEAPNEMV-ICD--KCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCCCCBSSSCCCCCBTTBCEE-ECS--SSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCCCEE-ECC--CCChHHHhhhCCCcccccccCCCCCEECCCCcCc
Confidence 467789999987642 223332 222 2225799999875332 3578999999654
No 94
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=61.47 E-value=1.8 Score=33.62 Aligned_cols=50 Identities=20% Similarity=0.294 Sum_probs=29.2
Q ss_pred CCCCeeeEecccCCCCCeeeccCccCCCcceecHHHHHHHHH-hcCCCcccCCCcc
Q 023042 197 EEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFS-TKGNKNCEVCGKE 251 (288)
Q Consensus 197 ee~~~CRICle~~e~g~~Li~PC~CkGsl~~vH~~CL~kWL~-~kg~~~CEICK~e 251 (288)
++...| ||....+++ .++.==.| -.++|..|+.-=+. ....+.|+.|+..
T Consensus 26 ~d~vrC-iC~~~~~~~-~mi~Cd~C---~~w~H~~C~~~~~~~~p~~w~C~~C~~~ 76 (98)
T 2lv9_A 26 TDVTRC-ICGFTHDDG-YMICCDKC---SVWQHIDCMGIDRQHIPDTYLCERCQPR 76 (98)
T ss_dssp CCBCCC-TTSCCSCSS-CEEEBTTT---CBEEETTTTTCCTTSCCSSBCCTTTSSS
T ss_pred CCCEEe-ECCCccCCC-cEEEcCCC---CCcCcCcCCCCCccCCCCCEECCCCcCC
Confidence 445567 886655443 44432223 36999999742111 1246899999754
No 95
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=60.99 E-value=1.6 Score=34.93 Aligned_cols=49 Identities=24% Similarity=0.351 Sum_probs=28.5
Q ss_pred ccccCCCCeeeEecccCCCCCeeeccCccCCCcceecHHHHHHHHHh--cCCCcccCC
Q 023042 193 EEIAEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFST--KGNKNCEVC 248 (288)
Q Consensus 193 ee~~ee~~~CRICle~~e~g~~Li~PC~CkGsl~~vH~~CL~kWL~~--kg~~~CEIC 248 (288)
+...+++..|.+|.+. | . ..-|..++--+.+|..||. |.. +|.+.|+-|
T Consensus 9 ~~~~~~~~~C~~C~~~---G-~-ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c 59 (107)
T 4gne_A 9 EPKQMHEDYCFQCGDG---G-E-LVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWH 59 (107)
T ss_dssp -CCCSSCSSCTTTCCC---S-E-EEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGG
T ss_pred CCcCCCCCCCCcCCCC---C-c-EeEECCCCCCcccccccCc--CCcCCCCCEECCCC
Confidence 3344677889999742 3 3 3346511223689999997 433 355666644
No 96
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=60.91 E-value=6.4 Score=31.61 Aligned_cols=37 Identities=24% Similarity=0.478 Sum_probs=30.5
Q ss_pred eccCccCCCcceecHHHHHHHHHhcCCCcccCCCcccccccce
Q 023042 216 KMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQNLPVT 258 (288)
Q Consensus 216 i~PC~CkGsl~~vH~~CL~kWL~~kg~~~CEICK~ey~~vpv~ 258 (288)
..||+ |.+=.+|+..|...+ .+.|+.|+..+..+-..
T Consensus 17 mIPCk-----HvFCydCa~~~~~~~-~k~Cp~C~~~V~rVe~~ 53 (101)
T 3vk6_A 17 MIPCK-----HVFCYDCAILHEKKG-DKMCPGCSDPVQRIEQC 53 (101)
T ss_dssp EETTC-----CEEEHHHHHHHHHTT-CCBCTTTCCBCSEEEEE
T ss_pred ecccc-----ccHHHHHHHHHHhcc-CCCCcCcCCeeeeeEEe
Confidence 57998 688899999998753 57999999999877653
No 97
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=57.05 E-value=4.6 Score=29.35 Aligned_cols=34 Identities=24% Similarity=0.633 Sum_probs=21.3
Q ss_pred cCCCCeeeEecccCCCCCeeeccC--ccCCCcceecHHHH
Q 023042 196 AEEEAVCRICLDICEEGNTLKMEC--SCKGALRLVHEECA 233 (288)
Q Consensus 196 ~ee~~~CRICle~~e~g~~Li~PC--~CkGsl~~vH~~CL 233 (288)
++....|.+|.....++..++ -| .|. .+||..|+
T Consensus 5 ~~~~~~C~~C~~p~~~~~~mI-~CD~~C~---~WfH~~Cv 40 (65)
T 2vpb_A 5 SDPVYPCGICTNEVNDDQDAI-LCEASCQ---KWFHRICT 40 (65)
T ss_dssp ----CBCTTTCSBCCTTSCEE-EBTTTTC---CEEEHHHH
T ss_pred CCCcCcCccCCCccCCCCCeE-ecccCcc---ccCchhcc
Confidence 566779999998875544443 34 343 69999997
No 98
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=54.95 E-value=1 Score=32.22 Aligned_cols=48 Identities=25% Similarity=0.455 Sum_probs=30.6
Q ss_pred CCCCeeeEecccCCCCCeeeccCccCCCcceecHHHHHHHHHh--cCCCcccCCCcc
Q 023042 197 EEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFST--KGNKNCEVCGKE 251 (288)
Q Consensus 197 ee~~~CRICle~~e~g~~Li~PC~CkGsl~~vH~~CL~kWL~~--kg~~~CEICK~e 251 (288)
.++..|.||.+. ++ |+ -|. +--..+|..||.-=+.. .+.+.|+.|...
T Consensus 7 ~~~~~C~vC~~~---g~-ll-~Cd--~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 7 HHMEFCRVCKDG---GE-LL-CCD--TCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp SSCSSCTTTCCC---SS-CB-CCS--SSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred CCCCcCCCCCCC---CC-EE-EcC--CCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 567789999753 22 22 222 22357999998743332 367899999764
No 99
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=51.28 E-value=7.1 Score=30.68 Aligned_cols=35 Identities=23% Similarity=0.381 Sum_probs=21.3
Q ss_pred CCCeeeEecccCC-----CCCeeeccCccCCCcceecHHHHHH
Q 023042 198 EEAVCRICLDICE-----EGNTLKMECSCKGALRLVHEECAIR 235 (288)
Q Consensus 198 e~~~CRICle~~e-----~g~~Li~PC~CkGsl~~vH~~CL~k 235 (288)
...+|.||+...+ .++.|+.==.| -..+|..||..
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C---~~~~H~~Cl~~ 43 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADC---GNSGHPSCLKF 43 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTT---CCEECHHHHTC
T ss_pred cCccccccCCchhhCcCCCchhceEhhhc---CCCCCCchhcC
Confidence 4578999997642 22345422122 26899999953
No 100
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=50.17 E-value=4.1 Score=32.12 Aligned_cols=51 Identities=20% Similarity=0.407 Sum_probs=34.0
Q ss_pred CeeeEecccCCCCCeeeccC-ccCCCcceecHHHHHH----HHH----hcCCCcccCCCcccc
Q 023042 200 AVCRICLDICEEGNTLKMEC-SCKGALRLVHEECAIR----WFS----TKGNKNCEVCGKEVQ 253 (288)
Q Consensus 200 ~~CRICle~~e~g~~Li~PC-~CkGsl~~vH~~CL~k----WL~----~kg~~~CEICK~ey~ 253 (288)
..|.||...+.+++.++.=| .|. .+||..|+.- .-. ..+.+.|+.|...-.
T Consensus 4 ~~C~iC~~p~~~~~~mi~Cdd~C~---~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~~ 63 (105)
T 2xb1_A 4 YPCGACRSEVNDDQDAILCEASCQ---KWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKE 63 (105)
T ss_dssp CBCTTTCSBCCTTSCEEECTTTTC---CEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTTT
T ss_pred CCCCCCCCccCCCCCEEEecCCcc---cccccccCCcCHHHHHhhccCCCCCEECccccCcCC
Confidence 47999998865544566555 685 6999999731 111 114689999987643
No 101
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=48.98 E-value=10 Score=29.89 Aligned_cols=49 Identities=20% Similarity=0.552 Sum_probs=32.1
Q ss_pred CCCCeeeEecccCCCCCeeeccCc-cCCCcceecHHHHHHH------------HHh--cCCCcccCCCcc
Q 023042 197 EEEAVCRICLDICEEGNTLKMECS-CKGALRLVHEECAIRW------------FST--KGNKNCEVCGKE 251 (288)
Q Consensus 197 ee~~~CRICle~~e~g~~Li~PC~-CkGsl~~vH~~CL~kW------------L~~--kg~~~CEICK~e 251 (288)
..+..|-||-.- +. ..+.||+ |. +.+|..||.+= +.. ..-+.|.-|..-
T Consensus 13 ~~D~~C~VC~~~-t~--~~l~pCRvC~---RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~CenL 76 (89)
T 1wil_A 13 VNDEMCDVCEVW-TA--ESLFPCRVCT---RVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCDNI 76 (89)
T ss_dssp CCSCCCTTTCCC-CS--SCCSSCSSSS---SCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTCCC
T ss_pred CCCcccCccccc-cc--cceecccccc---ccccHhhcccccccccHHHHHHHHccCCCCCccccccchh
Confidence 467789999532 22 2357877 43 68999999985 111 135899999544
No 102
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=48.45 E-value=5.8 Score=27.95 Aligned_cols=53 Identities=13% Similarity=0.236 Sum_probs=33.8
Q ss_pred cCCCCeeeEecccCCCCCeeeccCccCCCcceecHHHHHHHHHh---cCCCcccCCCcc
Q 023042 196 AEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFST---KGNKNCEVCGKE 251 (288)
Q Consensus 196 ~ee~~~CRICle~~e~g~~Li~PC~CkGsl~~vH~~CL~kWL~~---kg~~~CEICK~e 251 (288)
+++...|.||....+++..+|.==.| -.++|..|+.--... -....|+.|...
T Consensus 3 ~~e~~~C~~C~~~~~~~~~mI~Cd~C---~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 3 SGSSGQCGACGESYAADEFWICCDLC---EMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp CSSCCCCSSSCCCCCSSSCEEECSSS---CCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCCccCCCCCEEEccCC---CCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 46778899998776544445531123 379999997543221 146789988654
No 103
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=48.35 E-value=1 Score=31.51 Aligned_cols=48 Identities=29% Similarity=0.571 Sum_probs=29.7
Q ss_pred cCCCCeeeEecccCCCCCeeeccCccCCCcceecHHHHHHHHHh--cCCCcccCCCc
Q 023042 196 AEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFST--KGNKNCEVCGK 250 (288)
Q Consensus 196 ~ee~~~CRICle~~e~g~~Li~PC~CkGsl~~vH~~CL~kWL~~--kg~~~CEICK~ 250 (288)
+.++..|.||... ++.+. |. +=-..+|..||..=+.. ++.+.|+.|..
T Consensus 6 ~~~~~~C~vC~~~---g~ll~--Cd--~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 6 SGHEDFCSVCRKS---GQLLM--CD--TCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp CSSCCSCSSSCCS---SCCEE--CS--SSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCCccCCCC---CeEEE--cC--CCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 3567789999864 23222 22 22368999998743322 35788888853
No 104
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=47.38 E-value=2.5 Score=31.14 Aligned_cols=52 Identities=21% Similarity=0.407 Sum_probs=31.1
Q ss_pred cCCCCeeeEecccCCCCCeee--ccCccCCCcceecHHHHHHHHHhcCCCcccCCCccc
Q 023042 196 AEEEAVCRICLDICEEGNTLK--MECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEV 252 (288)
Q Consensus 196 ~ee~~~CRICle~~e~g~~Li--~PC~CkGsl~~vH~~CL~kWL~~kg~~~CEICK~ey 252 (288)
+++...| ||.... .| .+| .-|.|.. .+||..|+.-=-.-.+.+.|+.|....
T Consensus 3 ~~~~~yC-~C~~~~-~g-~MI~CD~cdC~~--~WfH~~Cvgl~~~p~~~w~Cp~C~~~~ 56 (70)
T 1x4i_A 3 SGSSGYC-ICNQVS-YG-EMVGCDNQDCPI--EWFHYGCVGLTEAPKGKWYCPQCTAAM 56 (70)
T ss_dssp CSCCCCS-TTSCCC-CS-SEECCSCTTCSC--CCEEHHHHTCSSCCSSCCCCHHHHHHH
T ss_pred CCCCeEE-EcCCCC-CC-CEeEeCCCCCCc--cCCcccccccCcCCCCCEECCCCCccc
Confidence 3456677 476543 33 344 3455643 599999986211113578999997653
No 105
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=47.17 E-value=4.1 Score=31.73 Aligned_cols=49 Identities=18% Similarity=0.533 Sum_probs=32.5
Q ss_pred cCCCCeeeEecccCCCCCeeeccCccCCCcceecHHHHHHHHHh--cCCCcccCCCcc
Q 023042 196 AEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFST--KGNKNCEVCGKE 251 (288)
Q Consensus 196 ~ee~~~CRICle~~e~g~~Li~PC~CkGsl~~vH~~CL~kWL~~--kg~~~CEICK~e 251 (288)
.++...|.+|... |+.|. |.+--+.||..||..=+.. .+.+.|+.|...
T Consensus 22 d~n~~~C~vC~~~---g~LL~----CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 22 DDSATICRVCQKP---GDLVM----CNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSSCCSSSCSS---SCCEE----CTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCCcCcCcCCC---CCEEE----CCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 3566799999864 23222 3333468999998543322 468999999865
No 106
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=45.80 E-value=18 Score=26.60 Aligned_cols=55 Identities=24% Similarity=0.463 Sum_probs=32.5
Q ss_pred CcccccCCCCeeeEecccCCCCCeeeccCc---cCCCcceecHHHHHHHHHh-------cCCCcccCCCcc
Q 023042 191 NDEEIAEEEAVCRICLDICEEGNTLKMECS---CKGALRLVHEECAIRWFST-------KGNKNCEVCGKE 251 (288)
Q Consensus 191 ~~ee~~ee~~~CRICle~~e~g~~Li~PC~---CkGsl~~vH~~CL~kWL~~-------kg~~~CEICK~e 251 (288)
+++..+++...| ||....+.+ .+| -|. |. .++|..|+.-=-.. -..+.|+.|+..
T Consensus 8 dd~~~~~~~~~C-iC~~~~~~g-~MI-~CD~~~C~---~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~ 72 (78)
T 1wew_A 8 EDPFQPEIKVRC-VCGNSLETD-SMI-QCEDPRCH---VWQHVGCVILPDKPMDGNPPLPESFYCEICRLT 72 (78)
T ss_dssp CCSSSCCCCCCC-SSCCCCCCS-CEE-ECSSTTTC---CEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHC
T ss_pred ccccCCCCCEEe-ECCCcCCCC-CEE-EECCccCC---ccccCEEEccccccccccccCCCCEECCCCCcc
Confidence 334444677888 897764333 333 233 54 49999997421111 136889999754
No 107
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=45.65 E-value=0.82 Score=33.09 Aligned_cols=49 Identities=22% Similarity=0.532 Sum_probs=29.5
Q ss_pred ccCCCCeeeEecccCCCCCeee--ccCccCCCcceecHHHHHHHHHh--cCCCcccCCCc
Q 023042 195 IAEEEAVCRICLDICEEGNTLK--MECSCKGALRLVHEECAIRWFST--KGNKNCEVCGK 250 (288)
Q Consensus 195 ~~ee~~~CRICle~~e~g~~Li--~PC~CkGsl~~vH~~CL~kWL~~--kg~~~CEICK~ 250 (288)
++++...| ||..... | .++ --|.|. ..+||..|+. |.. .+.+.|+.|..
T Consensus 7 d~~e~~yC-~C~~~~~-g-~MI~CD~c~C~--~~WfH~~Cvg--l~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 7 DPNEPTYC-LCNQVSY-G-EMIGCDNEQCP--IEWFHFSCVS--LTYKPKGKWYCPKCRG 59 (62)
T ss_dssp ---CCEET-TTTEECC-S-EEEECSCTTCS--SCEEETGGGT--CSSCCSSCCCCHHHHT
T ss_pred CCCCCcEE-ECCCCCC-C-CeeeeeCCCCC--cccEecccCC--cCcCCCCCEECcCccc
Confidence 34566777 8876532 3 444 234464 2599999987 332 35788998864
No 108
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=45.16 E-value=1.7 Score=31.34 Aligned_cols=47 Identities=28% Similarity=0.601 Sum_probs=30.3
Q ss_pred CCCCeeeEecccCCCCCeeeccCccCCCcceecHHHHHHHHH--hcCCCcccCCCc
Q 023042 197 EEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFS--TKGNKNCEVCGK 250 (288)
Q Consensus 197 ee~~~CRICle~~e~g~~Li~PC~CkGsl~~vH~~CL~kWL~--~kg~~~CEICK~ 250 (288)
.++..|.||... ++.+. | .+--..+|..||..=+. -++.+.|+.|..
T Consensus 6 ~~~~~C~vC~~~---g~ll~--C--D~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~ 54 (66)
T 1xwh_A 6 KNEDECAVCRDG---GELIC--C--DGCPRAFHLACLSPPLREIPSGTWRCSSCLQ 54 (66)
T ss_dssp SCCCSBSSSSCC---SSCEE--C--SSCCCEECTTTSSSCCSSCCSSCCCCHHHHH
T ss_pred CCCCCCccCCCC---CCEEE--c--CCCChhhcccccCCCcCcCCCCCeECccccC
Confidence 567789999864 33222 2 22235899999874332 236889999964
No 109
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=44.47 E-value=4.7 Score=31.85 Aligned_cols=35 Identities=23% Similarity=0.397 Sum_probs=20.8
Q ss_pred CeeeEecccCC------CCCeeeccCccCCCcceecHHHHHHHH
Q 023042 200 AVCRICLDICE------EGNTLKMECSCKGALRLVHEECAIRWF 237 (288)
Q Consensus 200 ~~CRICle~~e------~g~~Li~PC~CkGsl~~vH~~CL~kWL 237 (288)
..|.||+.... +++.|+.==.|. ..+|..||.-+.
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~---~~~H~~Cl~~~~ 42 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCG---RSGHPTCLQFTL 42 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSC---CEECTTTTTCCH
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCC---CccchhhCCChh
Confidence 57999987641 123444211232 579999997653
No 110
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=43.24 E-value=18 Score=26.36 Aligned_cols=52 Identities=15% Similarity=0.264 Sum_probs=31.4
Q ss_pred ccCCCCeeeEecccCCCCCeeeccCccCCCcceecHHHHHHHHH-------hcCCCcccCCCcc
Q 023042 195 IAEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFS-------TKGNKNCEVCGKE 251 (288)
Q Consensus 195 ~~ee~~~CRICle~~e~g~~Li~PC~CkGsl~~vH~~CL~kWL~-------~kg~~~CEICK~e 251 (288)
.++....| ||....+ +..+|.==.|. .++|..|+.-=.. ....+.|+.|...
T Consensus 12 ~d~~~~~C-~C~~~~~-~~~MI~Cd~C~---~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~ 70 (76)
T 1wem_A 12 YDPNALYC-ICRQPHN-NRFMICCDRCE---EWFHGDCVGISEARGRLLERNGEDYICPNCTIL 70 (76)
T ss_dssp CCTTCCCS-TTCCCCC-SSCEEECSSSC---CEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHH
T ss_pred cCCCCCEE-ECCCccC-CCCEEEeCCCC---CcEeCeEEccchhhhhhccCCCCeEECcCCcCc
Confidence 33456778 8876654 33454322343 6999999842111 2357899999754
No 111
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=39.78 E-value=4 Score=32.10 Aligned_cols=47 Identities=28% Similarity=0.542 Sum_probs=28.3
Q ss_pred eeeEecccCCCCCeeeccCccCCCcceecHHHHHHHHHh--cCCCcccCCCc
Q 023042 201 VCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFST--KGNKNCEVCGK 250 (288)
Q Consensus 201 ~CRICle~~e~g~~Li~PC~CkGsl~~vH~~CL~kWL~~--kg~~~CEICK~ 250 (288)
+|.||....++++.|+.==.|. +.+|..||.-=|.. ++.+.|+.|+.
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~---~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCD---RGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTC---CEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccCcCCCccceEEcCCCC---CeeecccCCCCCCCCCCCCeECCCCCC
Confidence 6778876533323333211233 68999998644433 46789999974
No 112
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=39.04 E-value=3.6 Score=30.91 Aligned_cols=46 Identities=22% Similarity=0.357 Sum_probs=27.9
Q ss_pred eeeEecccCCCCCeeeccCccCCCcceecHHHHHHHHHh--cC-CCcccCCCc
Q 023042 201 VCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFST--KG-NKNCEVCGK 250 (288)
Q Consensus 201 ~CRICle~~e~g~~Li~PC~CkGsl~~vH~~CL~kWL~~--kg-~~~CEICK~ 250 (288)
.|.||....+.++.|. | .+=-..+|..||.-=|.. ++ .+.|+.|..
T Consensus 28 ~C~vC~~~~~~~~ll~--C--D~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 28 SCRVCGGKHEPNMQLL--C--DECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SCSSSCCCCCSTTEEE--C--SSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCcCcCCcCCCCCEEE--c--CCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 7888976544444332 2 122257899998632222 35 788999864
No 113
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=36.12 E-value=6.4 Score=35.49 Aligned_cols=49 Identities=18% Similarity=0.350 Sum_probs=26.3
Q ss_pred CCeeeEecccCCCCCeeeccCccCCCcceecHHHHHHHHHh--cC-CCcccCCCcc
Q 023042 199 EAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFST--KG-NKNCEVCGKE 251 (288)
Q Consensus 199 ~~~CRICle~~e~g~~Li~PC~CkGsl~~vH~~CL~kWL~~--kg-~~~CEICK~e 251 (288)
...|.+|....+.+..| -| .+--..+|..||.-=|.. +| .+.|+.|..+
T Consensus 174 ~c~C~vC~~~~~~~~lL--~C--D~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~~ 225 (226)
T 3ask_A 174 VCACHLCGGRQDPDKQL--MC--DECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 225 (226)
T ss_dssp TTSCSSSCCCCC--CCE--EC--SSSCCEECSCC--CCCCSCCSSSCCCCGGGC--
T ss_pred CCCCcCCCCCCCCCCeE--Ec--CCCCcceeCccCCCCcccCCCCCCCCCcCCcCc
Confidence 34788887654433322 22 222358999998732222 46 7899999753
No 114
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=35.33 E-value=1.5 Score=31.37 Aligned_cols=47 Identities=26% Similarity=0.540 Sum_probs=29.2
Q ss_pred CCCCeeeEecccCCCCCeee--ccCccCCCcceecHHHHHHHHHh--cCCCcccCCCc
Q 023042 197 EEEAVCRICLDICEEGNTLK--MECSCKGALRLVHEECAIRWFST--KGNKNCEVCGK 250 (288)
Q Consensus 197 ee~~~CRICle~~e~g~~Li--~PC~CkGsl~~vH~~CL~kWL~~--kg~~~CEICK~ 250 (288)
++...| ||..... | .++ --|.|.. .++|..|+. |.. .+.+.|+.|..
T Consensus 7 ~e~~yC-~C~~~~~-g-~mi~CD~~~C~~--~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 7 NEPTYC-LCHQVSY-G-EMIGCDNPDCPI--EWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp -CCEET-TTTEECC-S-EEEECSCTTCSS--CEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCcEE-ECCCCCC-C-CeeEeeCCCCCC--CCEecccCC--cccCCCCCEECcCccC
Confidence 456677 8876542 3 344 2344642 489999987 433 25788998854
No 115
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=34.54 E-value=2.8 Score=29.53 Aligned_cols=48 Identities=27% Similarity=0.536 Sum_probs=30.2
Q ss_pred CCCCeeeEecccCCCCCeeeccCccCCCcceecHHHHHHHHH--hcCCCcccCCCcc
Q 023042 197 EEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFS--TKGNKNCEVCGKE 251 (288)
Q Consensus 197 ee~~~CRICle~~e~g~~Li~PC~CkGsl~~vH~~CL~kWL~--~kg~~~CEICK~e 251 (288)
..+..|.||... ++ |+ -|. +--..+|..||..=+. -++.+.|+.|...
T Consensus 3 ~~~~~C~vC~~~---g~-ll-~Cd--~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 52 (60)
T 2puy_A 3 IHEDFCSVCRKS---GQ-LL-MCD--TCSRVYHLDCLDPPLKTIPKGMWICPRCQDQ 52 (60)
T ss_dssp CCCSSCTTTCCC---SS-CE-ECS--SSSCEECGGGSSSCCSSCCCSCCCCHHHHHH
T ss_pred CCCCCCcCCCCC---Cc-EE-EcC--CCCcCEECCcCCCCcCCCCCCceEChhccCh
Confidence 356789999764 33 22 222 2336899999874332 2367899999654
No 116
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=34.07 E-value=5.6 Score=39.23 Aligned_cols=52 Identities=15% Similarity=0.215 Sum_probs=32.3
Q ss_pred CCCCeeeEecccCCCCCeeeccCccCCCcceecHHHHHHHHHh---cCCCcccCCCccc
Q 023042 197 EEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFST---KGNKNCEVCGKEV 252 (288)
Q Consensus 197 ee~~~CRICle~~e~g~~Li~PC~CkGsl~~vH~~CL~kWL~~---kg~~~CEICK~ey 252 (288)
.+...| ||....+.+..++.=..|. .++|..|+.-=-.. -+...|+.|....
T Consensus 35 ~~~~yC-~C~~~~d~~~~MIqCd~C~---~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 89 (488)
T 3kv5_D 35 PPPVYC-VCRQPYDVNRFMIECDICK---DWFHGSCVGVEEHHAVDIDLYHCPNCAVLH 89 (488)
T ss_dssp CCCEET-TTTEECCTTSCEEEBTTTC---CEEEHHHHTCCGGGGGGEEEBCCHHHHHHH
T ss_pred CCCeEE-eCCCcCCCCCCeEEccCCC---CceeeeecCcCcccccCCCEEECCCCcCCc
Confidence 445556 8876655455566544564 69999998422111 1358999998653
No 117
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=33.79 E-value=3.8 Score=30.06 Aligned_cols=47 Identities=17% Similarity=0.321 Sum_probs=26.6
Q ss_pred eeeEecccCCCCCeeeccCccCCCcceecHHHHHHHHHh--cC-CCcccCCCcc
Q 023042 201 VCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFST--KG-NKNCEVCGKE 251 (288)
Q Consensus 201 ~CRICle~~e~g~~Li~PC~CkGsl~~vH~~CL~kWL~~--kg-~~~CEICK~e 251 (288)
.|.||....++++ |+ -|. +=-..+|..||.-=|.. +| .+.|+.|..+
T Consensus 20 ~C~~C~~~~~~~~-ll-~CD--~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~~ 69 (70)
T 3asl_A 20 ACHLCGGRQDPDK-QL-MCD--ECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 69 (70)
T ss_dssp SBTTTCCCSCGGG-EE-ECT--TTCCEEEGGGSSSCCSSCCSSSCCCCTTTSCC
T ss_pred CCcCCCCcCCCCC-EE-EcC--CCCCceecccCCCCcCCCCCCCCcCCcCccCc
Confidence 4566665433332 32 332 22368999998632222 35 7899999754
No 118
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=32.06 E-value=5.1 Score=34.38 Aligned_cols=46 Identities=22% Similarity=0.582 Sum_probs=30.1
Q ss_pred CCeeeEecccCCCCCeeeccCccCCCcceecHHHHHHHHH--hcCCCcccCCCcc
Q 023042 199 EAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFS--TKGNKNCEVCGKE 251 (288)
Q Consensus 199 ~~~CRICle~~e~g~~Li~PC~CkGsl~~vH~~CL~kWL~--~kg~~~CEICK~e 251 (288)
+..|.+|..+ |+ | +-| .+--..+|..||.-=+. -.|.+.|+.|...
T Consensus 2 ~~~C~~C~~~---g~-l-l~C--d~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 2 ATICRVCQKP---GD-L-VMC--NQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCCBTTTCCC---SS-C-CCC--TTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CCcCccCCCC---Cc-e-eEC--CCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 4679999754 23 2 223 33346899999854332 2478999999876
No 119
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=29.88 E-value=13 Score=26.93 Aligned_cols=51 Identities=16% Similarity=0.159 Sum_probs=30.8
Q ss_pred CCCCeeeEecccCCCCCeeeccCccCCCcceecHHHHHHHHH--hcCCCcccCCCcc
Q 023042 197 EEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFS--TKGNKNCEVCGKE 251 (288)
Q Consensus 197 ee~~~CRICle~~e~g~~Li~PC~CkGsl~~vH~~CL~kWL~--~kg~~~CEICK~e 251 (288)
++...| ||....++++.++.==.| ..++|..|+.-=.. ......|+.|+..
T Consensus 14 ~~~~~C-~C~~~~~~g~~mI~Cd~C---~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~ 66 (72)
T 1wee_A 14 NWKVDC-KCGTKDDDGERMLACDGC---GVWHHTRCIGINNADALPSKFLCFRCIEL 66 (72)
T ss_dssp SSEECC-TTCCCSCCSSCEEECSSS---CEEEETTTTTCCTTSCCCSCCCCHHHHHH
T ss_pred CcceEe-eCCCccCCCCcEEECCCC---CCccCCeeeccCccccCCCcEECCCccCC
Confidence 456778 787665555455532234 37999999753211 1246789888653
No 120
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=28.69 E-value=10 Score=25.98 Aligned_cols=46 Identities=15% Similarity=0.297 Sum_probs=27.6
Q ss_pred eeeEecccCCCCCeeeccC-ccCCCcceecHHHHHHHHH--hcCCCcccCCC
Q 023042 201 VCRICLDICEEGNTLKMEC-SCKGALRLVHEECAIRWFS--TKGNKNCEVCG 249 (288)
Q Consensus 201 ~CRICle~~e~g~~Li~PC-~CkGsl~~vH~~CL~kWL~--~kg~~~CEICK 249 (288)
.|-||...++++..++.=- .|. .++|..|+.-=.. ......|+.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~---~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCD---EWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTC---CEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCC---ccCcccccCCCccccCCCCEECCCCC
Confidence 3667777665555555311 254 6999999753221 12568898885
No 121
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=28.07 E-value=72 Score=30.65 Aligned_cols=40 Identities=15% Similarity=0.263 Sum_probs=25.0
Q ss_pred CCeeeccCccCCCcceecHHHHHH--HHH---hcCCCcccCCCccccc
Q 023042 212 GNTLKMECSCKGALRLVHEECAIR--WFS---TKGNKNCEVCGKEVQN 254 (288)
Q Consensus 212 g~~Li~PC~CkGsl~~vH~~CL~k--WL~---~kg~~~CEICK~ey~~ 254 (288)
...+..||+-. .=-|.+|++. ||. .++.+.||+|...+..
T Consensus 256 ~~ri~~PvRg~---~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~ 300 (371)
T 3i2d_A 256 YTRMKYPSKSI---NCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIAL 300 (371)
T ss_dssp SSBCSSEEEET---TCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCG
T ss_pred cccccccCcCC---cCCCcceECHHHHHHHhhcCCceeCCCCCcccCH
Confidence 34566776532 1246667533 543 3578999999988743
No 122
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=24.71 E-value=5.5 Score=29.99 Aligned_cols=47 Identities=17% Similarity=0.325 Sum_probs=26.1
Q ss_pred eeeEecccCCCCCeeeccCccCCCcceecHHHHHHHHHh--cCC-CcccCCCcc
Q 023042 201 VCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFST--KGN-KNCEVCGKE 251 (288)
Q Consensus 201 ~CRICle~~e~g~~Li~PC~CkGsl~~vH~~CL~kWL~~--kg~-~~CEICK~e 251 (288)
.|.||....+++ .++ -|. +--+.+|..||.-=|.. .+. +.|+.|+.+
T Consensus 28 ~C~vC~~~~d~~-~ll-~CD--~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~d 77 (77)
T 3shb_A 28 ACHLCGGRQDPD-KQL-MCD--ECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 77 (77)
T ss_dssp SBTTTCCCSCGG-GEE-ECT--TTCCEEETTTSSSCCSSCCSSSCCCCTTTC--
T ss_pred cCCccCCCCCCc-cee-EeC--CCCCccCcccCCCcccCCCCCCceECcCcccc
Confidence 466665443332 232 222 22368999998754433 345 899999753
No 123
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=23.96 E-value=20 Score=25.67 Aligned_cols=49 Identities=22% Similarity=0.495 Sum_probs=27.4
Q ss_pred cCCCCeeeEecccCCCCCeeeccC---ccCCCcceecHHHHHHHHHh------cCCCcccCCCc
Q 023042 196 AEEEAVCRICLDICEEGNTLKMEC---SCKGALRLVHEECAIRWFST------KGNKNCEVCGK 250 (288)
Q Consensus 196 ~ee~~~CRICle~~e~g~~Li~PC---~CkGsl~~vH~~CL~kWL~~------kg~~~CEICK~ 250 (288)
+++...| ||....+.+. +| -| .|. .++|..|+--=-.. -..+.|+.|+.
T Consensus 7 ~e~~v~C-~C~~~~~~g~-mI-~CD~~~C~---~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 7 PEAKVRC-ICSSTMVNDS-MI-QCEDQRCQ---VWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp SSCEECC-TTCCCSCCSC-EE-ECSCTTTC---EEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred CCCCEEe-ECCCCcCCCC-EE-EECCCCCC---CeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 3455567 7865544443 33 34 465 59999996310000 02478999974
No 124
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=22.44 E-value=41 Score=24.42 Aligned_cols=51 Identities=18% Similarity=0.249 Sum_probs=30.3
Q ss_pred CCCCeeeEecccCCCCCeeeccCccCCCcceecHHHHHHHHHh---cCCCcccCCCcc
Q 023042 197 EEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFST---KGNKNCEVCGKE 251 (288)
Q Consensus 197 ee~~~CRICle~~e~g~~Li~PC~CkGsl~~vH~~CL~kWL~~---kg~~~CEICK~e 251 (288)
.+...| ||...++++..+|.=-.|. .++|..|+.---.. -....|+.|...
T Consensus 8 ~~~~yC-iC~~~~~~~~~MI~Cd~C~---~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~ 61 (75)
T 3kqi_A 8 TVPVYC-VCRLPYDVTRFMIECDACK---DWFHGSCVGVEEEEAPDIDIYHCPNCEKT 61 (75)
T ss_dssp CCCEET-TTTEECCTTSCEEECTTTC---CEEEHHHHTCCTTTGGGBSSCCCHHHHHH
T ss_pred CCeeEE-ECCCcCCCCCCEEEcCCCC---CCEecccccccccccCCCCEEECCCCccc
Confidence 344455 7766554444555433454 69999998532211 146889999754
No 125
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=20.06 E-value=30 Score=25.11 Aligned_cols=53 Identities=17% Similarity=0.360 Sum_probs=30.8
Q ss_pred cccccCCCCeeeEecccCCCCCeeeccCccCCCcceecHHHHHHHH-HhcCCCcccCCC
Q 023042 192 DEEIAEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWF-STKGNKNCEVCG 249 (288)
Q Consensus 192 ~ee~~ee~~~CRICle~~e~g~~Li~PC~CkGsl~~vH~~CL~kWL-~~kg~~~CEICK 249 (288)
+.+...+...| ||....+ ++.+|.==.|. .++|..|+.-=. ...+...|+.|.
T Consensus 12 ~~~~~~~~~~C-iC~~~~~-~~~MIqCd~C~---~WfH~~Cvgi~~~~~~~~~~C~~C~ 65 (68)
T 3o70_A 12 ENLYFQGLVTC-FCMKPFA-GRPMIECNECH---TWIHLSCAKIRKSNVPEVFVCQKCR 65 (68)
T ss_dssp --CTTTTCCCS-TTCCCCT-TCCEEECTTTC---CEEETTTTTCCTTSCCSSCCCHHHH
T ss_pred ccCCCCCceEe-ECCCcCC-CCCEEECCCCC---ccccccccCcCcccCCCcEECCCCC
Confidence 33444677888 9976544 44555422343 699999974211 112467888875
Done!