Query 023043
Match_columns 288
No_of_seqs 121 out of 217
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 08:02:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023043.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023043hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF08569 Mo25: Mo25-like; Int 100.0 1E-109 2E-114 792.3 22.2 283 1-287 1-285 (335)
2 KOG1566 Conserved protein Mo25 100.0 9E-107 2E-111 757.8 25.3 286 1-286 1-287 (342)
3 PF08767 CRM1_C: CRM1 C termin 83.8 26 0.00056 33.7 12.9 173 81-253 73-271 (319)
4 PF08064 UME: UME (NUC010) dom 83.1 0.58 1.3E-05 38.0 1.2 78 201-286 2-84 (107)
5 PF10508 Proteasom_PSMB: Prote 82.6 39 0.00084 34.4 14.2 145 124-276 75-222 (503)
6 cd00020 ARM Armadillo/beta-cat 82.6 1.9 4.2E-05 33.0 3.9 108 166-280 8-115 (120)
7 PLN03200 cellulose synthase-in 82.4 68 0.0015 38.7 17.5 190 71-278 438-631 (2102)
8 cd00020 ARM Armadillo/beta-cat 80.6 14 0.00031 28.0 8.2 97 138-238 21-118 (120)
9 KOG0946 ER-Golgi vesicle-tethe 76.3 35 0.00076 37.4 11.8 128 66-197 108-244 (970)
10 PF12717 Cnd1: non-SMC mitotic 75.7 5.2 0.00011 34.7 4.9 84 181-281 4-88 (178)
11 PTZ00446 vacuolar sorting prot 72.6 6.5 0.00014 35.6 4.8 28 1-28 1-41 (191)
12 PF10508 Proteasom_PSMB: Prote 71.3 1.2E+02 0.0027 30.8 14.1 151 121-279 114-266 (503)
13 KOG1525 Sister chromatid cohes 70.4 2.1E+02 0.0046 33.1 16.9 244 9-276 16-320 (1266)
14 KOG1566 Conserved protein Mo25 67.3 10 0.00023 37.1 5.2 133 125-257 38-180 (342)
15 KOG0946 ER-Golgi vesicle-tethe 66.9 38 0.00083 37.1 9.6 164 65-277 21-187 (970)
16 PF01602 Adaptin_N: Adaptin N 65.9 38 0.00082 33.4 9.0 100 169-280 156-255 (526)
17 PLN03200 cellulose synthase-in 65.2 1E+02 0.0023 37.2 13.4 189 75-278 526-716 (2102)
18 PF05952 ComX: Bacillus compet 59.0 6.7 0.00015 29.0 1.8 19 117-135 5-23 (57)
19 KOG1991 Nuclear transport rece 58.2 2.9E+02 0.0063 31.1 14.4 158 89-267 48-233 (1010)
20 PTZ00429 beta-adaptin; Provisi 57.5 2.8E+02 0.0062 30.1 14.9 69 176-255 308-380 (746)
21 PF12348 CLASP_N: CLASP N term 54.1 47 0.001 29.2 6.7 179 89-283 17-204 (228)
22 KOG0166 Karyopherin (importin) 53.0 1.3E+02 0.0027 31.5 10.3 113 72-189 357-481 (514)
23 PF12717 Cnd1: non-SMC mitotic 52.7 1E+02 0.0022 26.7 8.4 82 166-252 64-152 (178)
24 PF12783 Sec7_N: Guanine nucle 51.3 1.5E+02 0.0033 25.1 9.3 79 161-243 69-149 (168)
25 PF08569 Mo25: Mo25-like; Int 50.4 2.5E+02 0.0055 27.4 11.8 141 70-213 155-304 (335)
26 KOG1992 Nuclear export recepto 48.8 2.5E+02 0.0054 31.2 12.0 23 201-224 225-247 (960)
27 PF00514 Arm: Armadillo/beta-c 48.3 63 0.0014 21.0 5.1 37 71-107 4-40 (41)
28 PF01417 ENTH: ENTH domain; I 44.6 85 0.0018 25.6 6.4 91 58-152 14-112 (125)
29 PF07304 SRA1: Steroid recepto 44.4 67 0.0015 27.9 6.0 40 41-80 67-106 (157)
30 PF13646 HEAT_2: HEAT repeats; 44.2 8.5 0.00018 28.4 0.3 45 219-277 8-52 (88)
31 cd03572 ENTH_epsin_related ENT 43.9 1.9E+02 0.0041 24.3 8.4 85 65-152 19-110 (122)
32 KOG1655 Protein involved in va 42.5 97 0.0021 28.6 6.8 131 1-140 1-158 (218)
33 PF11262 Tho2: Transcription f 40.6 3.3E+02 0.0072 25.9 16.7 168 42-240 77-256 (298)
34 KOG1058 Vesicle coat complex C 36.5 5.3E+02 0.012 28.6 12.0 197 48-277 38-264 (948)
35 PF13646 HEAT_2: HEAT repeats; 36.0 35 0.00075 25.0 2.5 44 211-269 32-75 (88)
36 PF06757 Ins_allergen_rp: Inse 34.1 62 0.0013 28.3 4.2 24 157-180 24-47 (179)
37 PF06371 Drf_GBD: Diaphanous G 33.0 3E+02 0.0065 23.2 9.0 60 176-239 127-186 (187)
38 PF14680 FANCI_HD2: FANCI heli 32.1 46 0.001 30.8 3.2 46 145-213 36-84 (234)
39 PF13513 HEAT_EZ: HEAT-like re 31.7 28 0.00061 23.9 1.3 47 227-277 3-49 (55)
40 PHA02800 hypothetical protein; 30.3 2.9E+02 0.0064 24.4 7.5 84 132-216 44-138 (161)
41 PF04388 Hamartin: Hamartin pr 30.0 2.5E+02 0.0054 30.0 8.5 72 166-240 5-97 (668)
42 PF03224 V-ATPase_H_N: V-ATPas 27.6 1.7E+02 0.0038 27.5 6.3 63 178-245 70-139 (312)
43 PF03224 V-ATPase_H_N: V-ATPas 26.3 2.5E+02 0.0054 26.4 7.1 96 166-266 106-201 (312)
44 PF01602 Adaptin_N: Adaptin N 26.2 6.3E+02 0.014 24.8 14.3 103 125-242 305-408 (526)
45 KOG1920 IkappaB kinase complex 24.1 8.9E+02 0.019 28.2 11.6 96 7-117 862-959 (1265)
46 KOG0166 Karyopherin (importin) 22.8 9E+02 0.019 25.4 12.2 130 70-206 312-455 (514)
47 PF13929 mRNA_stabil: mRNA sta 22.7 7.1E+02 0.015 24.2 9.8 146 95-255 111-264 (292)
48 PTZ00464 SNF-7-like protein; P 22.4 4.3E+02 0.0094 24.2 7.6 27 1-27 1-31 (211)
49 PF12977 DUF3861: Domain of Un 21.9 98 0.0021 25.1 3.0 37 231-270 58-94 (94)
50 COG0255 RpmC Ribosomal protein 21.8 1.3E+02 0.0029 22.9 3.5 49 8-56 9-60 (69)
51 PF14771 DUF4476: Domain of un 21.7 3.2E+02 0.0069 21.1 5.8 30 165-196 8-37 (95)
52 PF06393 BID: BH3 interacting 21.5 2E+02 0.0044 26.3 5.2 70 41-116 85-166 (196)
53 COG0219 CspR Predicted rRNA me 21.4 46 0.001 29.3 1.1 17 137-153 9-25 (155)
54 KOG3230 Vacuolar assembly/sort 20.2 2.4E+02 0.0052 26.1 5.4 66 1-78 1-68 (224)
55 COG5657 CSE1 CAS/CSE protein i 20.2 5.6E+02 0.012 28.8 9.0 133 75-224 85-241 (947)
56 smart00802 UME Domain in UVSB 20.2 1.3E+02 0.0028 24.6 3.4 77 201-285 2-83 (107)
No 1
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=100.00 E-value=9.8e-110 Score=792.27 Aligned_cols=283 Identities=53% Similarity=0.839 Sum_probs=250.0
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHHHHHhhhccCCCCCCcHHHHHHHHHHHHhhch
Q 023043 1 MKGLFKSKPRTPVDIVRQTRDLIIYANRSADVRESKREDKMAELCKNIRELKSILYGNSESEPVSEACAQLTAEFFRENT 80 (288)
Q Consensus 1 M~~lF~~~~k~P~elVr~l~e~l~~L~~~~~~~~~K~~~k~eei~K~L~~mK~il~G~~e~~p~~e~~~qLa~ei~~~dl 80 (288)
|+||||++||||+|+||+++|+|.+|+ . ..++++++..|||+|+|++||.||+|++|.+|+||+|+||++|+|++|+
T Consensus 1 M~FlF~k~~KtP~ElVr~l~e~L~~L~-~--~~~~~~~k~~eeisK~L~~mK~IL~G~~e~ep~~e~v~qLa~Ei~~~dl 77 (335)
T PF08569_consen 1 MSFLFKKKPKTPAELVRSLREALEKLD-S--KSDKKREKAQEEISKYLQQMKEILYGDGEPEPNPEQVAQLAQEIYRSDL 77 (335)
T ss_dssp -----------HHHHHHHHHHHHHHHH-S--S-HHHHHHHHHHHHHHHHHHHHHHHS-SS----HHHHHHHHHHHHHHTH
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHhc-c--ccCcchhhHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHhCH
Confidence 999999999999999999999999998 2 2456666667999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCChhhhhhHHHHHHHHhhhcccCcc-chhhHhhcC-HhHHHHHHHhccCchhhhhHHHHHHHHHHHHHHH
Q 023043 81 LRLLITCLPKLNLEARKDATQVVANLQRQQVHSKL-IASDYLEAN-IDLLDILIAGYENTDMALHYGAMLRECIRHQSVA 158 (288)
Q Consensus 81 l~~Li~~l~~L~fE~RKdv~~If~~llr~~~~~r~-p~v~Yl~~~-peil~~L~~gY~~~dial~~G~mLRecik~e~la 158 (288)
+..||.+|+.||||+|||+++||++++|+++++++ |+|+||++| |||+++|+.||++||+|++||.|||||+|||++|
T Consensus 78 l~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~mlRec~k~e~l~ 157 (335)
T PF08569_consen 78 LYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGDMLRECIKHESLA 157 (335)
T ss_dssp HHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHHHHHHHTTSHHHH
T ss_pred HHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHHHHHHHHhhHHHH
Confidence 99999999999999999999999999999999999 999999999 9999999999999999999999999999999999
Q ss_pred HHHhcchhhHhhhhhccCCCchhhhhHHHHHHHHHhhChhHHHHHHHhhHHHHHHHHhHhhccCCCceehhchhhHHHHH
Q 023043 159 RYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLLGDI 238 (288)
Q Consensus 159 ~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefl~~nyd~Ff~~yn~~Ll~s~NYVTkRQSLKLLgel 238 (288)
++||++++||+||+|++.++||||||||+||+|+||+||++||+||.+|||+||+.|| +||+|+|||||||||||||||
T Consensus 158 ~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~-~Ll~s~NYvtkrqslkLL~el 236 (335)
T PF08569_consen 158 KIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYN-KLLESSNYVTKRQSLKLLGEL 236 (335)
T ss_dssp HHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHH-HHCT-SSHHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH-HHccCCCeEeehhhHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998 999999999999999999999
Q ss_pred hccCCchHHHHHhcCChhhHHHHHHHhhCCCCCcccccceeeeeecccC
Q 023043 239 LLDRSNSVVMTRYVSSRENLRILMNLLRQEYPDRSISCFQAVCCESKQT 287 (288)
Q Consensus 239 Lldr~N~~vM~rYi~~~~NLKl~M~LL~d~sknIQ~EAFhVf~~~~~~~ 287 (288)
|+||+|++||+|||+||+|||+||+||+|+|||||+|||||||+|||..
T Consensus 237 lldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp 285 (335)
T PF08569_consen 237 LLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANP 285 (335)
T ss_dssp HHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-S
T ss_pred HHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999999853
No 2
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=100.00 E-value=9.4e-107 Score=757.80 Aligned_cols=286 Identities=54% Similarity=0.851 Sum_probs=280.8
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHHHHHhhhccCCCCCCcHHHHHHHHHHHHhhch
Q 023043 1 MKGLFKSKPRTPVDIVRQTRDLIIYANRSADVRESKREDKMAELCKNIRELKSILYGNSESEPVSEACAQLTAEFFRENT 80 (288)
Q Consensus 1 M~~lF~~~~k~P~elVr~l~e~l~~L~~~~~~~~~K~~~k~eei~K~L~~mK~il~G~~e~~p~~e~~~qLa~ei~~~dl 80 (288)
|++||+++||||+|+||.++|+|..++..++..++|+++++|||+|++..+|+|+||++|.+|.+|+|+||++|+|+.|+
T Consensus 1 M~~~f~k~~ktP~d~Vr~~rd~l~~~~~~~~l~~~~~~k~~eevsk~l~~~k~il~Gn~e~eP~~e~~~qLtqef~~~~~ 80 (342)
T KOG1566|consen 1 MFFLFKKSPKTPADVVRRTRDKLKFLDKVRDLLDHKREKAVEEVSKNLDMLKSILYGNDEAEPFAEAVAQLTQEFYNADV 80 (342)
T ss_pred CCCccCCCCCCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHhhhHHheeCCCCCCCChHHHHHHHHHHHhCCc
Confidence 89999999999999999999999999998766788888888999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCChhhhhhHHHHHHHHhhhcccCccchhhHhhcCHhHHHHHHHhccC-chhhhhHHHHHHHHHHHHHHHH
Q 023043 81 LRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYEN-TDMALHYGAMLRECIRHQSVAR 159 (288)
Q Consensus 81 l~~Li~~l~~L~fE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~peil~~L~~gY~~-~dial~~G~mLRecik~e~la~ 159 (288)
+..||+++|+++||+|||+.+||++++||++|+|+|+|+|+++|||+++.|++||++ ||||++||+|||||+|||.||+
T Consensus 81 l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~~~~iaL~cg~mlrEcirhe~Lak 160 (342)
T KOG1566|consen 81 LSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYENTPEIALTCGNMLRECIRHEFLAK 160 (342)
T ss_pred hHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 999999999999999999999999999999999999999999999999999999996 9999999999999999999999
Q ss_pred HHhcchhhHhhhhhccCCCchhhhhHHHHHHHHHhhChhHHHHHHHhhHHHHHHHHhHhhccCCCceehhchhhHHHHHh
Q 023043 160 YVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLLGDIL 239 (288)
Q Consensus 160 ~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefl~~nyd~Ff~~yn~~Ll~s~NYVTkRQSLKLLgelL 239 (288)
++|+|++||+||.||+.|+||||||||+|||++||+||.+|||||.+|||+||.+|+++|++|+||||||||+|||||+|
T Consensus 161 iiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrqs~kllg~ll 240 (342)
T KOG1566|consen 161 IILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQSLKLLGELL 240 (342)
T ss_pred HHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHHHHHhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999996679999999999999999999999
Q ss_pred ccCCchHHHHHhcCChhhHHHHHHHhhCCCCCcccccceeeeeeccc
Q 023043 240 LDRSNSVVMTRYVSSRENLRILMNLLRQEYPDRSISCFQAVCCESKQ 286 (288)
Q Consensus 240 ldr~N~~vM~rYi~~~~NLKl~M~LL~d~sknIQ~EAFhVf~~~~~~ 286 (288)
+||+|+.+|++||++|+|||+||+||||||||||+|||||||+|||.
T Consensus 241 ldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAn 287 (342)
T KOG1566|consen 241 LDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVAN 287 (342)
T ss_pred hCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999985
No 3
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=83.83 E-value=26 Score=33.66 Aligned_cols=173 Identities=16% Similarity=0.177 Sum_probs=98.9
Q ss_pred HHHHHhhCCCCChhhhh-hHHHHHHHHhhhcccCccchhhHhhcC--HhHHHHHHHhc-cCchhhhhHHHHHHHHHHHHH
Q 023043 81 LRLLITCLPKLNLEARK-DATQVVANLQRQQVHSKLIASDYLEAN--IDLLDILIAGY-ENTDMALHYGAMLRECIRHQS 156 (288)
Q Consensus 81 l~~Li~~l~~L~fE~RK-dv~~If~~llr~~~~~r~p~v~Yl~~~--peil~~L~~gY-~~~dial~~G~mLRecik~e~ 156 (288)
+..++..-..-..++|- .|-.+++.+.++-.+.-.|.+.-+..+ --++.++-+.+ +.||.....=.+||-++++-.
T Consensus 73 ~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f 152 (319)
T PF08767_consen 73 LDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEAVFECTLPMINKDFEEYPEHRVNFFKLLRAINEHCF 152 (319)
T ss_dssp HHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhH
Confidence 33333344444555565 455666666664332222222222111 12223333334 369999999999999998733
Q ss_pred HHHHHhcchhhHhhhhhc----cCCCchhhhhHHHHHHHHHhhCh----hHHHHHHHhhHHHHHHHHhHhhccCCCceeh
Q 023043 157 VARYVLESQHMKKFFDYI----QLPNFDIAADAAATFKELLTRHK----STVAEFLSKNYDWFFAEYNSKLLESSNYITR 228 (288)
Q Consensus 157 la~~iL~~~~f~~fF~yv----~~~~FdiasDAf~TfkelLt~Hk----~lvaefl~~nyd~Ff~~yn~~Ll~s~NYVTk 228 (288)
-+=.-|..+.|..+++.+ ..++-||+..++.++.+++++-. ..+.+|..+.|-.+..+.=.-|..+..=.-=
T Consensus 153 ~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~~~~~~~~~F~~~y~~~il~~if~vltD~~Hk~gf 232 (319)
T PF08767_consen 153 PALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSKTNPEFANQFYQQYYLDILQDIFSVLTDSDHKSGF 232 (319)
T ss_dssp HHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHHHHHHSTT-GGGH
T ss_pred HHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCcccHHHH
Confidence 222236777888888765 68999999999999999999643 4555888888777666644344443322222
Q ss_pred hchhhHHHHHhc--------------cCCchHHHHHhcC
Q 023043 229 RQAVKLLGDILL--------------DRSNSVVMTRYVS 253 (288)
Q Consensus 229 RQSLKLLgelLl--------------dr~N~~vM~rYi~ 253 (288)
++.-.+|..|+- ..+|..++..|++
T Consensus 233 ~~q~~iL~~Lf~~ve~~~i~~~l~~~~~~n~~~v~~~i~ 271 (319)
T PF08767_consen 233 KLQSQILSNLFRLVESGSIQVPLFDPGMSNQEFVSEYIA 271 (319)
T ss_dssp HHHHHHHHHHHHHHHTT-SSSSSSSTTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcccccccccCCCCccHHHHHHHHH
Confidence 233366666661 2356666666654
No 4
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=83.11 E-value=0.58 Score=37.99 Aligned_cols=78 Identities=17% Similarity=0.259 Sum_probs=56.5
Q ss_pred HHHHHhhHHHHHHHHhHhhcc---CCCceehhchhhHHHHHhccCCchHHHHHhcCChhhHHHHHHHhhC--CCCCcccc
Q 023043 201 AEFLSKNYDWFFAEYNSKLLE---SSNYITRRQAVKLLGDILLDRSNSVVMTRYVSSRENLRILMNLLRQ--EYPDRSIS 275 (288)
Q Consensus 201 aefl~~nyd~Ff~~yn~~Ll~---s~NYVTkRQSLKLLgelLldr~N~~vM~rYi~~~~NLKl~M~LL~d--~sknIQ~E 275 (288)
++||..|+=..+..+|..|.. +..|..|+++++=||+++- .+..||+.. +=-||..|+. ..+.++.+
T Consensus 2 ~~fL~~~~Lgil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~------~~~~~i~~~--~pQI~a~L~sal~~~~l~~~ 73 (107)
T PF08064_consen 2 ADFLQPHILGILTRFSDVLNDLRGKKPIPEKKRALRSIEELIK------LGGSHISSA--RPQIMACLQSALEIPELREE 73 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHH------HhHHHHHHH--HHHHHHHHHHHhCChhhHHH
Confidence 689999988888888766666 7999999999999999993 333444332 2224444443 34589999
Q ss_pred cceeeeeeccc
Q 023043 276 CFQAVCCESKQ 286 (288)
Q Consensus 276 AFhVf~~~~~~ 286 (288)
|+.++++|+..
T Consensus 74 al~~W~~fi~~ 84 (107)
T PF08064_consen 74 ALSCWNCFIKT 84 (107)
T ss_pred HHHHHHHHHHH
Confidence 99999888754
No 5
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=82.64 E-value=39 Score=34.42 Aligned_cols=145 Identities=17% Similarity=0.231 Sum_probs=101.0
Q ss_pred CHhHHHHHHHhccCchhhh--hHHHHHHHHHHHHHH-HHHHhcchhhHhhhhhccCCCchhhhhHHHHHHHHHhhChhHH
Q 023043 124 NIDLLDILIAGYENTDMAL--HYGAMLRECIRHQSV-ARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTV 200 (288)
Q Consensus 124 ~peil~~L~~gY~~~dial--~~G~mLRecik~e~l-a~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lv 200 (288)
-|++...|..|..+|+-.. .+=..|+-|+++... +..+...+.+-.+...+..++-+||..|...++.+.. |+.-.
T Consensus 75 ~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~-~~~~~ 153 (503)
T PF10508_consen 75 LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLAS-HPEGL 153 (503)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhC-CchhH
Confidence 5777788888877665433 222337778887665 5556666667777789999999999999999999886 55455
Q ss_pred HHHHHhhHHHHHHHHhHhhccCCCceehhchhhHHHHHhccCCchHHHHHhcCChhhHHHHHHHhhCCCCCccccc
Q 023043 201 AEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLLGDILLDRSNSVVMTRYVSSRENLRILMNLLRQEYPDRSISC 276 (288)
Q Consensus 201 aefl~~nyd~Ff~~yn~~Ll~s~NYVTkRQSLKLLgelLldr~N~~vM~rYi~~~~NLKl~M~LL~d~sknIQ~EA 276 (288)
+..+..|- ..+.. .++..+|=+.|.+.+-++.++- +.+-..+ .++.+..-+..+...|.++---+|.-|
T Consensus 154 ~~l~~~~~---~~~L~-~l~~~~~~~vR~Rv~el~v~i~--~~S~~~~-~~~~~sgll~~ll~eL~~dDiLvqlna 222 (503)
T PF10508_consen 154 EQLFDSNL---LSKLK-SLMSQSSDIVRCRVYELLVEIA--SHSPEAA-EAVVNSGLLDLLLKELDSDDILVQLNA 222 (503)
T ss_pred HHHhCcch---HHHHH-HHHhccCHHHHHHHHHHHHHHH--hcCHHHH-HHHHhccHHHHHHHHhcCccHHHHHHH
Confidence 55656654 45664 7888877788888999999986 3333443 555555678888887877544445443
No 6
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=82.61 E-value=1.9 Score=32.98 Aligned_cols=108 Identities=13% Similarity=0.120 Sum_probs=76.4
Q ss_pred hhHhhhhhccCCCchhhhhHHHHHHHHHhhChhHHHHHHHhhHHHHHHHHhHhhccCCCceehhchhhHHHHHhccCCch
Q 023043 166 HMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLLGDILLDRSNS 245 (288)
Q Consensus 166 ~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefl~~nyd~Ff~~yn~~Ll~s~NYVTkRQSLKLLgelLldr~N~ 245 (288)
.+..+.+.+..++-++-..|..++..+-..-+.....++..+ ++... .+++.++|+-.++.++..|+.|..+..
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~---~i~~l-~~~l~~~~~~v~~~a~~~L~~l~~~~~-- 81 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAG---GLPAL-VQLLKSEDEEVVKAALWALRNLAAGPE-- 81 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCC---ChHHH-HHHHhCCCHHHHHHHHHHHHHHccCcH--
Confidence 444555666666778888999999886666577777777644 34444 367888999999999999999986543
Q ss_pred HHHHHhcCChhhHHHHHHHhhCCCCCcccccceee
Q 023043 246 VVMTRYVSSRENLRILMNLLRQEYPDRSISCFQAV 280 (288)
Q Consensus 246 ~vM~rYi~~~~NLKl~M~LL~d~sknIQ~EAFhVf 280 (288)
.....+ -+..-++.+..+|.+++..++-.|..++
T Consensus 82 ~~~~~~-~~~g~l~~l~~~l~~~~~~~~~~a~~~l 115 (120)
T cd00020 82 DNKLIV-LEAGGVPKLVNLLDSSNEDIQKNATGAL 115 (120)
T ss_pred HHHHHH-HHCCChHHHHHHHhcCCHHHHHHHHHHH
Confidence 222223 2345788899999988777666555443
No 7
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=82.36 E-value=68 Score=38.70 Aligned_cols=190 Identities=17% Similarity=0.153 Sum_probs=127.0
Q ss_pred HHHHHHhhchHHHHHhhCCCCChhhhhhHHHHHHHHhhhcccCccchhhHhhc--CHhHHHHHHHhccCchhhhhHHHHH
Q 023043 71 LTAEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEA--NIDLLDILIAGYENTDMALHYGAML 148 (288)
Q Consensus 71 La~ei~~~dll~~Li~~l~~L~fE~RKdv~~If~~llr~~~~~r~p~v~Yl~~--~peil~~L~~gY~~~dial~~G~mL 148 (288)
..+.|.+.+.++.|+..|..=+-+.|+.++....++-....+.+ .--+.. =|-++..|-.| ++++--.+=..|
T Consensus 438 ~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr---~aIieaGaIP~LV~LL~s~--~~~iqeeAawAL 512 (2102)
T PLN03200 438 LWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESK---WAITAAGGIPPLVQLLETG--SQKAKEDSATVL 512 (2102)
T ss_pred HHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHH---HHHHHCCCHHHHHHHHcCC--CHHHHHHHHHHH
Confidence 44667777889999999988788888888888877764222111 111111 14444444322 333333333333
Q ss_pred HHHHHHHH-HHHHHhcchhhHhhhhhccCCCchhhhhHHHHHHHHHhh-ChhHHHHHHHhhHHHHHHHHhHhhccCCCce
Q 023043 149 RECIRHQS-VARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTR-HKSTVAEFLSKNYDWFFAEYNSKLLESSNYI 226 (288)
Q Consensus 149 Recik~e~-la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~-Hk~lvaefl~~nyd~Ff~~yn~~Ll~s~NYV 226 (288)
-.+..|+. ..+.|.....+-.+++.+..+++++--.|..++..++.. ++..+ ..+ ..|+.+++--
T Consensus 513 ~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I------------~~L-v~LLlsdd~~ 579 (2102)
T PLN03200 513 WNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATI------------SQL-TALLLGDLPE 579 (2102)
T ss_pred HHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHH------------HHH-HHHhcCCChh
Confidence 33333443 444455667788888888888999988888888887543 22222 334 2678888888
Q ss_pred ehhchhhHHHHHhccCCchHHHHHhcCChhhHHHHHHHhhCCCCCcccccce
Q 023043 227 TRRQAVKLLGDILLDRSNSVVMTRYVSSRENLRILMNLLRQEYPDRSISCFQ 278 (288)
Q Consensus 227 TkRQSLKLLgelLldr~N~~vM~rYi~~~~NLKl~M~LL~d~sknIQ~EAFh 278 (288)
++-.+++.||.++---....+.+.-+.+..=+..+..||++.++.+|=+|..
T Consensus 580 ~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~ 631 (2102)
T PLN03200 580 SKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAAS 631 (2102)
T ss_pred HHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHH
Confidence 8888999999998766666666666667789999999999999999999873
No 8
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=80.61 E-value=14 Score=27.99 Aligned_cols=97 Identities=13% Similarity=0.130 Sum_probs=70.1
Q ss_pred chhhhhHHHHHHHHHHH-HHHHHHHhcchhhHhhhhhccCCCchhhhhHHHHHHHHHhhChhHHHHHHHhhHHHHHHHHh
Q 023043 138 TDMALHYGAMLRECIRH-QSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYN 216 (288)
Q Consensus 138 ~dial~~G~mLRecik~-e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefl~~nyd~Ff~~yn 216 (288)
+++-..+-..|.....+ +.....++..+.+..+.+++..++-++.-.|..++..+....+.....+...+ +.....
T Consensus 21 ~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g---~l~~l~ 97 (120)
T cd00020 21 ENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIVLEAG---GVPKLV 97 (120)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHHHHCC---ChHHHH
Confidence 45555555666666665 77777888888888888899889999999999999998766554333333333 344443
Q ss_pred HhhccCCCceehhchhhHHHHH
Q 023043 217 SKLLESSNYITRRQAVKLLGDI 238 (288)
Q Consensus 217 ~~Ll~s~NYVTkRQSLKLLgel 238 (288)
+++.+++.=++++++-+|+.|
T Consensus 98 -~~l~~~~~~~~~~a~~~l~~l 118 (120)
T cd00020 98 -NLLDSSNEDIQKNATGALSNL 118 (120)
T ss_pred -HHHhcCCHHHHHHHHHHHHHh
Confidence 677788888888988888765
No 9
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.27 E-value=35 Score=37.39 Aligned_cols=128 Identities=15% Similarity=0.212 Sum_probs=79.9
Q ss_pred HHHHHHHHHHH-hhchHHHHHhhCCCCChhhhhhHHHHHHHHhhhcccCccchhh-HhhcCHhHHHHHHHhccC-chhhh
Q 023043 66 EACAQLTAEFF-RENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASD-YLEANIDLLDILIAGYEN-TDMAL 142 (288)
Q Consensus 66 e~~~qLa~ei~-~~dll~~Li~~l~~L~fE~RKdv~~If~~llr~~~~~r~p~v~-Yl~~~peil~~L~~gY~~-~dial 142 (288)
+.-.++|..++ +.|.+..|+..+...||-.|.-..++++++++.+ ++-+. -|..+|-=+..|+.--.+ .|+.=
T Consensus 108 d~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r----~~e~q~~ll~~P~gIS~lmdlL~DsrE~IR 183 (970)
T KOG0946|consen 108 DLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCR----PTELQDALLVSPMGISKLMDLLRDSREPIR 183 (970)
T ss_pred HHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcC----CHHHHHHHHHCchhHHHHHHHHhhhhhhhc
Confidence 33567888775 4589999999999999999999999999999844 33344 556677777777654432 11111
Q ss_pred hHHH-HHHHHHHH-HHHHHHHhcchhhHhhhhhccC----CCchhhhhHHHHHHHHHhhCh
Q 023043 143 HYGA-MLRECIRH-QSVARYVLESQHMKKFFDYIQL----PNFDIAADAAATFKELLTRHK 197 (288)
Q Consensus 143 ~~G~-mLRecik~-e~la~~iL~~~~f~~fF~yv~~----~~FdiasDAf~TfkelLt~Hk 197 (288)
+-|. +|-|..|. ..+-+++-....|.++|+-++- ..==|.=|++.-+.-||..|-
T Consensus 184 Ne~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~ 244 (970)
T KOG0946|consen 184 NEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNI 244 (970)
T ss_pred hhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCc
Confidence 1111 11222221 1233444444567777776652 222356688888888887774
No 10
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=75.69 E-value=5.2 Score=34.73 Aligned_cols=84 Identities=19% Similarity=0.326 Sum_probs=64.2
Q ss_pred hhhhHHHHHHHHHhhChhHHHHHHHhhHHHHHHHHhHhhccCCCceehhchhhHHHHHhccCCchHHHHHhcCChhhH-H
Q 023043 181 IAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLLGDILLDRSNSVVMTRYVSSRENL-R 259 (288)
Q Consensus 181 iasDAf~TfkelLt~Hk~lvaefl~~nyd~Ff~~yn~~Ll~s~NYVTkRQSLKLLgelLldr~N~~vM~rYi~~~~NL-K 259 (288)
|-+-|..++-||..||+.+|-.|+. .. ...|.+++=..|++++..|..|++. -||--...+ -
T Consensus 4 vR~n~i~~l~DL~~r~~~~ve~~~~--------~l-~~~L~D~~~~VR~~al~~Ls~Li~~--------d~ik~k~~l~~ 66 (178)
T PF12717_consen 4 VRNNAIIALGDLCIRYPNLVEPYLP--------NL-YKCLRDEDPLVRKTALLVLSHLILE--------DMIKVKGQLFS 66 (178)
T ss_pred HHHHHHHHHHHHHHhCcHHHHhHHH--------HH-HHHHCCCCHHHHHHHHHHHHHHHHc--------CceeehhhhhH
Confidence 4567889999999999999866554 22 2578888889999999999999864 455556666 7
Q ss_pred HHHHHhhCCCCCcccccceeee
Q 023043 260 ILMNLLRQEYPDRSISCFQAVC 281 (288)
Q Consensus 260 l~M~LL~d~sknIQ~EAFhVf~ 281 (288)
.++.+|.|++..|+--|=..|.
T Consensus 67 ~~l~~l~D~~~~Ir~~A~~~~~ 88 (178)
T PF12717_consen 67 RILKLLVDENPEIRSLARSFFS 88 (178)
T ss_pred HHHHHHcCCCHHHHHHHHHHHH
Confidence 7788889998888766544443
No 11
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=72.59 E-value=6.5 Score=35.59 Aligned_cols=28 Identities=18% Similarity=0.204 Sum_probs=19.9
Q ss_pred CCCCCCCCCCC-------------hHHHHHHHHHHHHHhhc
Q 023043 1 MKGLFKSKPRT-------------PVDIVRQTRDLIIYANR 28 (288)
Q Consensus 1 M~~lF~~~~k~-------------P~elVr~l~e~l~~L~~ 28 (288)
|.|||||+.++ |.+-+-.+++++..|..
T Consensus 1 m~~~fgk~~~~~~~~~~~~~~~~~~~~AIl~Lk~~~~~L~k 41 (191)
T PTZ00446 1 MRFWFGKKKNSSECSDNKKKNNDEIYKAILKNREAIDALEK 41 (191)
T ss_pred CccccCCCCCCCcchhhhhccCCCHHHHHHHHHHHHHHHHH
Confidence 88999766444 55666677888877764
No 12
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=71.29 E-value=1.2e+02 Score=30.81 Aligned_cols=151 Identities=17% Similarity=0.213 Sum_probs=100.4
Q ss_pred hhcCHhHHHHHHHhcc--CchhhhhHHHHHHHHHHHHHHHHHHhcchhhHhhhhhccCCCchhhhhHHHHHHHHHhhChh
Q 023043 121 LEANIDLLDILIAGYE--NTDMALHYGAMLRECIRHQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKS 198 (288)
Q Consensus 121 l~~~peil~~L~~gY~--~~dial~~G~mLRecik~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~ 198 (288)
+...++++..++.+-. +.++|-.+..+|+...+++.-...++.++..-.+-+.+..++=.+-.=+++.+-.+.. |..
T Consensus 114 ~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~-~S~ 192 (503)
T PF10508_consen 114 LLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIAS-HSP 192 (503)
T ss_pred HhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHh-cCH
Confidence 4456777777766654 5678889999999999998888777776654455444444332333334444444433 333
Q ss_pred HHHHHHHhhHHHHHHHHhHhhccCCCceehhchhhHHHHHhccCCchHHHHHhcCChhhHHHHHHHhhCCCCCcccccce
Q 023043 199 TVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLLGDILLDRSNSVVMTRYVSSRENLRILMNLLRQEYPDRSISCFQ 278 (288)
Q Consensus 199 lvaefl~~nyd~Ff~~yn~~Ll~s~NYVTkRQSLKLLgelLldr~N~~vM~rYi~~~~NLKl~M~LL~d~sknIQ~EAFh 278 (288)
-++++.... .++...- +.+.++--..+.-++.+|++|-...++. .|+.+..=++.+.++|.+.+..-.+-+++
T Consensus 193 ~~~~~~~~s--gll~~ll-~eL~~dDiLvqlnalell~~La~~~~g~----~yL~~~gi~~~L~~~l~~~~~dp~~~~~~ 265 (503)
T PF10508_consen 193 EAAEAVVNS--GLLDLLL-KELDSDDILVQLNALELLSELAETPHGL----QYLEQQGIFDKLSNLLQDSEEDPRLSSLL 265 (503)
T ss_pred HHHHHHHhc--cHHHHHH-HHhcCccHHHHHHHHHHHHHHHcChhHH----HHHHhCCHHHHHHHHHhccccCCcccchh
Confidence 344444431 2555553 5677788888999999999999988775 56666788889999988776655555555
Q ss_pred e
Q 023043 279 A 279 (288)
Q Consensus 279 V 279 (288)
|
T Consensus 266 l 266 (503)
T PF10508_consen 266 L 266 (503)
T ss_pred h
Confidence 4
No 13
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=70.37 E-value=2.1e+02 Score=33.08 Aligned_cols=244 Identities=14% Similarity=0.173 Sum_probs=135.1
Q ss_pred CCChHHHHHHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHH-HHHhhhccCCCCCCcHHHHHHHHHHHHhhchHHHHHhh
Q 023043 9 PRTPVDIVRQTRDLIIYANRSADVRESKREDKMAELCKNIR-ELKSILYGNSESEPVSEACAQLTAEFFRENTLRLLITC 87 (288)
Q Consensus 9 ~k~P~elVr~l~e~l~~L~~~~~~~~~K~~~k~eei~K~L~-~mK~il~G~~e~~p~~e~~~qLa~ei~~~dll~~Li~~ 87 (288)
+=|-.|+++.|++...-|.+.. .+. .. .+.+.+... -++..+....+++- +|--..|=+|+|.. .
T Consensus 16 ~~s~~ell~rLk~l~~~l~~~~--qd~--~~-~~~~~pl~~~l~~~~~L~h~d~dv------rllvacCvseilRi---~ 81 (1266)
T KOG1525|consen 16 PISKDELLKRLKKLANCLASLD--QDN--LD-LASLLPLADHLIKDFLLKHKDKDV------RLLVACCVSEILRI---Y 81 (1266)
T ss_pred cccHHHHHHHHHHHHHHHhhcc--cCc--hh-HHHHHHHHHHHhhHHHhcCCCcCh------hHHHHHHHHHHHHH---h
Confidence 4556788888888766665432 111 11 123333322 24555554544443 34555565556554 3
Q ss_pred CCCCChhhhhhHHHHHHHHhhhcccCccchhhHhhcCHhHHHHHHHh--------c-------------------cCchh
Q 023043 88 LPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAG--------Y-------------------ENTDM 140 (288)
Q Consensus 88 l~~L~fE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~peil~~L~~g--------Y-------------------~~~di 140 (288)
-|.+||+.- +...||..++++.-|=.-+.--|.-+++.|+..|... + .+|..
T Consensus 82 aPeaPy~~~-~lkdIf~~~~~q~~gL~d~~sp~f~r~~~lletl~~~k~~l~~~l~d~~e~~~~~f~~f~d~~~~~~~~~ 160 (1266)
T KOG1525|consen 82 APEAPYTDE-QLKDIFQLILSQFSGLGDVESPYFKRYFYLLETLAKVKFCLLMLLEDCQELVHELFRTFFDLARKGHPKK 160 (1266)
T ss_pred CCCCCCcHH-HHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHhHHHheeeccchHHHHHHHHHHHHHHHhccccHH
Confidence 578888877 8899999999977554444445666666666665321 1 13333
Q ss_pred hhhHHHHHHHHHHH-----HHHHHHHhcc----------------------------hhhHhhhhhccCCCchhhhhHHH
Q 023043 141 ALHYGAMLRECIRH-----QSVARYVLES----------------------------QHMKKFFDYIQLPNFDIAADAAA 187 (288)
Q Consensus 141 al~~G~mLRecik~-----e~la~~iL~~----------------------------~~f~~fF~yv~~~~FdiasDAf~ 187 (288)
..+-+.|++..|-- ..+..++|++ +...+|+.-.=..-+-.-+.-..
T Consensus 161 v~~~~~i~~~li~e~d~v~~e~L~~ll~~lv~~~~~~~~~a~~la~~li~~~a~~~~~~i~~f~~~~~~~~~s~~~~~~~ 240 (1266)
T KOG1525|consen 161 VFNMLDIAIMLITEEDTVQSELLDVLLENLVKPGRDTIKEADKLASDLIERCADNLEDTIANFLNSCLTEYKSRQSSLKI 240 (1266)
T ss_pred HHHHHHHHHHHHHhhccchHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHhhhhhchhHHHHHHHHHhhccccccchhh
Confidence 44455555554431 1222222221 12233332111111113344445
Q ss_pred HHHHHHhhChhHHHHHHHhhHHHHHHHHhHhhccCCCceehhchhhHHHHHhccCCchHHHHHhcCChhhHHHHHHHhhC
Q 023043 188 TFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLLGDILLDRSNSVVMTRYVSSRENLRILMNLLRQ 267 (288)
Q Consensus 188 TfkelLt~Hk~lvaefl~~nyd~Ff~~yn~~Ll~s~NYVTkRQSLKLLgelLldr~N~~vM~rYi~~~~NLKl~M~LL~d 267 (288)
.+.+++-.+-.++.+-|..=-- +. ..=|.|+|=-+|-++++|+|.++.+.+..-. =..++-.+...+-+.|
T Consensus 241 ~~he~i~~L~~~~p~ll~~vip----~l-~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~----~~~~~~~~~fl~r~~D 311 (1266)
T KOG1525|consen 241 KYHELILELWRIAPQLLLAVIP----QL-EFELLSEQEEVRLKAVKLVGRMFSDKDSQLS----ETYDDLWSAFLGRFND 311 (1266)
T ss_pred HHHHHHHHHHHhhHHHHHHHHH----HH-HHHHhcchHHHHHHHHHHHHHHHhcchhhhc----ccchHHHHHHHHHhcc
Confidence 5555555555555555543222 21 1236788888999999999999988775433 2256666777788888
Q ss_pred CCCCccccc
Q 023043 268 EYPDRSISC 276 (288)
Q Consensus 268 ~sknIQ~EA 276 (288)
.|-.+++|+
T Consensus 312 ~~~~vR~~~ 320 (1266)
T KOG1525|consen 312 ISVEVRMEC 320 (1266)
T ss_pred CChhhhhhH
Confidence 888888775
No 14
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=67.34 E-value=10 Score=37.10 Aligned_cols=133 Identities=15% Similarity=0.174 Sum_probs=84.9
Q ss_pred HhHHHHHHHhccCchhhhhHHHHHHHHHH-HHHHHHHHhcchhhHhhhhhccCCCchhhhhHHHHHHHHHhhCh---hHH
Q 023043 125 IDLLDILIAGYENTDMALHYGAMLRECIR-HQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHK---STV 200 (288)
Q Consensus 125 peil~~L~~gY~~~dial~~G~mLRecik-~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk---~lv 200 (288)
-++++.+-+||..+...+......+.-.. .-+|+.-+-.++.+.....+...-.||--=|+...|.-++.++. ..+
T Consensus 38 ~k~~eevsk~l~~~k~il~Gn~e~eP~~e~~~qLtqef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~t 117 (342)
T KOG1566|consen 38 EKAVEEVSKNLDMLKSILYGNDEAEPFAEAVAQLTQEFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPT 117 (342)
T ss_pred HHHHHHHHHHHhhhHHheeCCCCCCCChHHHHHHHHHHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchH
Confidence 34444444554444333333333332221 12355555566677788888888888888899888888888765 567
Q ss_pred HHHHHhhHHHHHH---HHh---HhhccCCCceehhchhhHHHHHhccCCchHHHHHhcCChhh
Q 023043 201 AEFLSKNYDWFFA---EYN---SKLLESSNYITRRQAVKLLGDILLDRSNSVVMTRYVSSREN 257 (288)
Q Consensus 201 aefl~~nyd~Ff~---~yn---~~Ll~s~NYVTkRQSLKLLgelLldr~N~~vM~rYi~~~~N 257 (288)
++||..|.+-.+. .|. ...|+.+|..----+-+-|.+++|.-.|+.-.-.||..|..
T Consensus 118 v~Yl~t~~e~~~~lv~~~~~~~~iaL~cg~mlrEcirhe~LakiiL~s~~~~~FF~~vq~p~F 180 (342)
T KOG1566|consen 118 VEYLETNPEILDNLVKGYENTPEIALTCGNMLRECIRHEFLAKIILESTNFEKFFLYVQLPNF 180 (342)
T ss_pred HHHHHhCHHHHHHHHhhhccchHHHHHHHHHHHHHHhhHHHHHHHHcchhHHHHHHHHhccch
Confidence 7888887665432 221 24566666655445557788888888888888888887755
No 15
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.95 E-value=38 Score=37.09 Aligned_cols=164 Identities=18% Similarity=0.235 Sum_probs=107.6
Q ss_pred HHHHHHHHHHHHhhchHHHHHhhCCCCChhhhhhHHHHHHHHhhhc---ccCccchhhHhhcCHhHHHHHHHhccCchhh
Q 023043 65 SEACAQLTAEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQ---VHSKLIASDYLEANIDLLDILIAGYENTDMA 141 (288)
Q Consensus 65 ~e~~~qLa~ei~~~dll~~Li~~l~~L~fE~RKdv~~If~~llr~~---~~~r~p~v~Yl~~~peil~~L~~gY~~~dia 141 (288)
.|-+..|...+..+-+ +|-|||++.=...+-|.. +|.. -=+-++..|=+-|.+||+-
T Consensus 21 aETI~kLcDRvessTL------------~eDRR~A~rgLKa~srkYR~~Vga~--------Gmk~li~vL~~D~~D~E~i 80 (970)
T KOG0946|consen 21 AETIEKLCDRVESSTL------------LEDRRDAVRGLKAFSRKYREEVGAQ--------GMKPLIQVLQRDYMDPEII 80 (970)
T ss_pred HhHHHHHHHHHhhccc------------hhhHHHHHHHHHHHHHHHHHHHHHc--------ccHHHHHHHhhccCCHHHH
Confidence 3556667766666544 367888876555544421 2211 1366777888888888765
Q ss_pred hhHHHHHHHHHHHHHHHHHHhcchhhHhhhhhccCCCchhhhhHHHHHHHHHhhChhHHHHHHHhhHHHHHHHHhHhhcc
Q 023043 142 LHYGAMLRECIRHQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLE 221 (288)
Q Consensus 142 l~~G~mLRecik~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefl~~nyd~Ff~~yn~~Ll~ 221 (288)
-.+=..+--.++|+. +-.-++.+. .+.|-=.-|-|.++..+..+.--+. +.++|+
T Consensus 81 k~~LdTl~il~~~dd-------------~~~v~dds~--qsdd~g~~iae~fik~qd~I~lll~-----~~e~~D----- 135 (970)
T KOG0946|consen 81 KYALDTLLILTSHDD-------------SPEVMDDST--QSDDLGLWIAEQFIKNQDNITLLLQ-----SLEEFD----- 135 (970)
T ss_pred HHHHHHHHHHHhcCc-------------chhhcccch--hhhHHHHHHHHHHHcCchhHHHHHH-----HHHhhc-----
Confidence 433333332333332 222344555 6667777788888887765543222 223443
Q ss_pred CCCceehhchhhHHHHHhccCCchHHHHHhcCChhhHHHHHHHhhCCCCCcccccc
Q 023043 222 SSNYITRRQAVKLLGDILLDRSNSVVMTRYVSSRENLRILMNLLRQEYPDRSISCF 277 (288)
Q Consensus 222 s~NYVTkRQSLKLLgelLldr~N~~vM~rYi~~~~NLKl~M~LL~d~sknIQ~EAF 277 (288)
+-.||-+++||..+|-.|. -++-..-+.+|--.--||-+|+|....|+=||-
T Consensus 136 ---F~VR~~aIqLlsalls~r~-~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~i 187 (970)
T KOG0946|consen 136 ---FHVRLYAIQLLSALLSCRP-TELQDALLVSPMGISKLMDLLRDSREPIRNEAI 187 (970)
T ss_pred ---hhhhhHHHHHHHHHHhcCC-HHHHHHHHHCchhHHHHHHHHhhhhhhhchhHH
Confidence 7789999999999999988 567777888999999999999999999887764
No 16
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=65.94 E-value=38 Score=33.38 Aligned_cols=100 Identities=12% Similarity=0.175 Sum_probs=61.6
Q ss_pred hhhhhccCCCchhhhhHHHHHHHHHhhChhHHHHHHHhhHHHHHHHHhHhhccCCCceehhchhhHHHHHhccCCchHHH
Q 023043 169 KFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLLGDILLDRSNSVVM 248 (288)
Q Consensus 169 ~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefl~~nyd~Ff~~yn~~Ll~s~NYVTkRQSLKLLgelLldr~N~~vM 248 (288)
.+.+.+.-++-.|.+.|...+.++ ...+.....++. .++.... +++..++--.+...+++|+.+. +.+..-.
T Consensus 156 ~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~~~----~~~~~L~-~~l~~~~~~~q~~il~~l~~~~--~~~~~~~ 227 (526)
T PF01602_consen 156 KLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSLIP----KLIRILC-QLLSDPDPWLQIKILRLLRRYA--PMEPEDA 227 (526)
T ss_dssp HHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTHHH----HHHHHHH-HHHTCCSHHHHHHHHHHHTTST--SSSHHHH
T ss_pred HHhhhccCCcchhHHHHHHHHHHH-ccCcchhhhhHH----HHHHHhh-hcccccchHHHHHHHHHHHhcc--cCChhhh
Confidence 333455677788888899888888 222222122222 2344442 5567777778888888888665 4444443
Q ss_pred HHhcCChhhHHHHHHHhhCCCCCcccccceee
Q 023043 249 TRYVSSRENLRILMNLLRQEYPDRSISCFQAV 280 (288)
Q Consensus 249 ~rYi~~~~NLKl~M~LL~d~sknIQ~EAFhVf 280 (288)
.. ...+..+..+|++.+..|.+||...+
T Consensus 228 ~~----~~~i~~l~~~l~s~~~~V~~e~~~~i 255 (526)
T PF01602_consen 228 DK----NRIIEPLLNLLQSSSPSVVYEAIRLI 255 (526)
T ss_dssp HH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hH----HHHHHHHHHHhhccccHHHHHHHHHH
Confidence 22 45667777777777777877776543
No 17
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=65.24 E-value=1e+02 Score=37.23 Aligned_cols=189 Identities=10% Similarity=0.084 Sum_probs=122.1
Q ss_pred HHhhchHHHHHhhCCCCChhhhhhHHHHHHHHhhhcccCc-cchhhHhhc-CHhHHHHHHHhccCchhhhhHHHHHHHHH
Q 023043 75 FFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSK-LIASDYLEA-NIDLLDILIAGYENTDMALHYGAMLRECI 152 (288)
Q Consensus 75 i~~~dll~~Li~~l~~L~fE~RKdv~~If~~llr~~~~~r-~p~v~Yl~~-~peil~~L~~gY~~~dial~~G~mLReci 152 (288)
+.+.+.+..|+.-|..=+++.|+.++..-.++.+...... .|.++.+.. .|++....++ ..|.|+-.+-
T Consensus 526 V~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~---------vLgnIlsl~~ 596 (2102)
T PLN03200 526 VESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLD---------VLGHVLSVAS 596 (2102)
T ss_pred HHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHH---------HHHHHHhhcc
Confidence 3466888889999988899999999988888876321110 111221111 2222222211 2344444333
Q ss_pred HHHHHHHHHhcchhhHhhhhhccCCCchhhhhHHHHHHHHHhhChhHHHHHHHhhHHHHHHHHhHhhccCCCceehhchh
Q 023043 153 RHQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAV 232 (288)
Q Consensus 153 k~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefl~~nyd~Ff~~yn~~Ll~s~NYVTkRQSL 232 (288)
.++.....+.....+..+.+.++.++=++--+|..++-.+.+.+++.....+..+- +.-.- .||.+++--+++++-
T Consensus 597 ~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~aga---IpPLV-~LLss~~~~v~keAA 672 (2102)
T PLN03200 597 LEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEI---INPCI-KLLTNNTEAVATQSA 672 (2102)
T ss_pred hhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCC---HHHHH-HHHhcCChHHHHHHH
Confidence 44434343444566777888888888889999999999999988887777666542 22332 689999999999999
Q ss_pred hHHHHHhccCCchHHHHHhcCChhhHHHHHHHhhCCCCCcccccce
Q 023043 233 KLLGDILLDRSNSVVMTRYVSSRENLRILMNLLRQEYPDRSISCFQ 278 (288)
Q Consensus 233 KLLgelLldr~N~~vM~rYi~~~~NLKl~M~LL~d~sknIQ~EAFh 278 (288)
.-|+.+... ...--..++-...=++-.+.+|++++-.+.-+|-.
T Consensus 673 ~AL~nL~~~--~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ 716 (2102)
T PLN03200 673 RALAALSRS--IKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVC 716 (2102)
T ss_pred HHHHHHHhC--CCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHH
Confidence 999999942 22222223345667899999999987766655543
No 18
>PF05952 ComX: Bacillus competence pheromone ComX; InterPro: IPR009233 Competence is the ability of a cell to take up exogenous DNA from its environment, resulting in transformation. It is widespread among bacteria and is probably an important mechanism for the horizontal transfer of genes. Cells that take up DNA inevitably acquire the nucleotides the DNA consists of, and, because nucleotides are needed for DNA and RNA synthesis and are expensive to synthesise, these may make a significant contribution to the cell's energy budget []. The lateral gene transfer caused by competence also contributes to the genetic diversity that makes evolution possible. DNA usually becomes available by the death and lysis of other cells. Competent bacteria use components of extracellular filaments called type 4 pili to create pores in their membranes and pull DNA through the pores into the cytoplasm. This process, including the development of competence and the expression of the uptake machinery, is regulated in response to cell-cell signalling and/or nutritional conditions []. Natural genetic competence in Bacillus subtilis is controlled by quorum-sensing (QS). The ComP- ComA two-component system detects the signalling molecule ComX, and this signal is transduced by a conserved phosphotransfer mechanism. ComX is synthesised as an inactive precursor and is then cleaved and modified by ComQ before export to the extracellular environment [].
Probab=59.03 E-value=6.7 Score=29.03 Aligned_cols=19 Identities=32% Similarity=0.461 Sum_probs=16.6
Q ss_pred hhhHhhcCHhHHHHHHHhc
Q 023043 117 ASDYLEANIDLLDILIAGY 135 (288)
Q Consensus 117 ~v~Yl~~~peil~~L~~gY 135 (288)
.|.||..|||++.-|..|=
T Consensus 5 iV~YLv~nPevl~kl~~g~ 23 (57)
T PF05952_consen 5 IVNYLVQNPEVLEKLKEGE 23 (57)
T ss_pred HHHHHHHChHHHHHHHcCC
Confidence 3889999999999998764
No 19
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=58.24 E-value=2.9e+02 Score=31.14 Aligned_cols=158 Identities=18% Similarity=0.217 Sum_probs=83.9
Q ss_pred CCCChhhhhhHHHHHHHHhhhcccCc-cchhh-------HhhcCHhHHHHHHHhccCchhhhhHHHHHHHHHHHHHHHHH
Q 023043 89 PKLNLEARKDATQVVANLQRQQVHSK-LIASD-------YLEANIDLLDILIAGYENTDMALHYGAMLRECIRHQSVARY 160 (288)
Q Consensus 89 ~~L~fE~RKdv~~If~~llr~~~~~r-~p~v~-------Yl~~~peil~~L~~gY~~~dial~~G~mLRecik~e~la~~ 160 (288)
...|+-.|..++.-|.|.+.++-+++ .|... =-.=+..|+++++++.+. +-...|. |+ +.
T Consensus 48 d~~~l~vrqaaaIYlKN~I~~~W~~~~~~g~~~~I~e~dk~~irenIl~~iv~~p~~--iRvql~~----~l------~~ 115 (1010)
T KOG1991|consen 48 DGVPLPVRQAAAIYLKNKITKSWSSHEAPGRPFGIPEEDKAVIRENILETIVQVPEL--IRVQLTA----CL------NT 115 (1010)
T ss_pred cCCchhHHHHHHHHHHHHHHhcCCccCCCCCcCCCChHHHHHHHHHHHHHHHhCchH--HHHHHHH----HH------HH
Confidence 34556566666666666665554333 22211 111145677777776321 1111222 22 33
Q ss_pred Hhcch---hhHhhhhhc----cCCCchhhhhHHHHHHHHHhhCh-----------hHHHHHHHhhHHHHHHHHhHhhccC
Q 023043 161 VLESQ---HMKKFFDYI----QLPNFDIAADAAATFKELLTRHK-----------STVAEFLSKNYDWFFAEYNSKLLES 222 (288)
Q Consensus 161 iL~~~---~f~~fF~yv----~~~~FdiasDAf~TfkelLt~Hk-----------~lvaefl~~nyd~Ff~~yn~~Ll~s 222 (288)
|++.+ ..|.+++++ +++.=-.-=-|.-.+.+|...|+ .++.+++-.= -+..+ +|+..
T Consensus 116 Ii~~D~p~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k~ye~k~~eeR~~l~~~v~~~fP~i----l~~~~-~ll~~ 190 (1010)
T KOG1991|consen 116 IIKADYPEQWPGLLDKIKNLLQSQDANHVYGALLCLYQLFKTYEWKKDEERQPLGEAVEELFPDI----LQIFN-GLLSQ 190 (1010)
T ss_pred HHhcCCcccchhHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHH----HHHHH-hhccc
Confidence 44443 456677655 33322122246667777776665 3344444333 33444 89999
Q ss_pred CCceehhchhhHHHHHhc--cCCchHHHHHhcCChhhHHHHHHHhhC
Q 023043 223 SNYITRRQAVKLLGDILL--DRSNSVVMTRYVSSRENLRILMNLLRQ 267 (288)
Q Consensus 223 ~NYVTkRQSLKLLgelLl--dr~N~~vM~rYi~~~~NLKl~M~LL~d 267 (288)
+|| ||.+++--+|- --..+--+-+++.+++..---|.++..
T Consensus 191 ~s~----~s~el~klIlKifks~~~~~LP~~L~~~~~f~~W~~l~l~ 233 (1010)
T KOG1991|consen 191 ESY----QSVELQKLILKIFKSLIYYELPLELSAPETFTSWMELFLS 233 (1010)
T ss_pred cch----HHHHHHHHHHHHHHHHHHHhCCHHhhCchhHHHHHHHHHH
Confidence 988 78777766662 122333345677888888888887654
No 20
>PTZ00429 beta-adaptin; Provisional
Probab=57.54 E-value=2.8e+02 Score=30.12 Aligned_cols=69 Identities=16% Similarity=0.290 Sum_probs=52.7
Q ss_pred CCCchhhhhHHHHHHHHHhhChhHHHHHHHhhHHHHHHHHhHhhccCCCceehhchhhHHHHHhccCCchHH----HHHh
Q 023043 176 LPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLLGDILLDRSNSVV----MTRY 251 (288)
Q Consensus 176 ~~~FdiasDAf~TfkelLt~Hk~lvaefl~~nyd~Ff~~yn~~Ll~s~NYVTkRQSLKLLgelLldr~N~~v----M~rY 251 (288)
.+.-+|.-=++.++..++.+|+.+. ..+++.||-.|| .++|| |+..|.+|..+. +..|... +..|
T Consensus 308 ss~~eiqyvaLr~I~~i~~~~P~lf----~~~~~~Ff~~~~-----Dp~yI-K~~KLeIL~~La-ne~Nv~~IL~EL~eY 376 (746)
T PTZ00429 308 RRDAETQYIVCKNIHALLVIFPNLL----RTNLDSFYVRYS-----DPPFV-KLEKLRLLLKLV-TPSVAPEILKELAEY 376 (746)
T ss_pred CCCccHHHHHHHHHHHHHHHCHHHH----HHHHHhhhcccC-----CcHHH-HHHHHHHHHHHc-CcccHHHHHHHHHHH
Confidence 4567888889999999999998665 456888997775 68896 999999999665 6667655 3456
Q ss_pred cCCh
Q 023043 252 VSSR 255 (288)
Q Consensus 252 i~~~ 255 (288)
+.+.
T Consensus 377 a~d~ 380 (746)
T PTZ00429 377 ASGV 380 (746)
T ss_pred hhcC
Confidence 6554
No 21
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=54.11 E-value=47 Score=29.19 Aligned_cols=179 Identities=16% Similarity=0.191 Sum_probs=89.0
Q ss_pred CCCChhhhhhHHHHHHHHhhhcccCccchhhHhhcCHhHHHHHHHhccCchh--hhhHHHHHHHHHHH-----HHHHHHH
Q 023043 89 PKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYENTDM--ALHYGAMLRECIRH-----QSVARYV 161 (288)
Q Consensus 89 ~~L~fE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~peil~~L~~gY~~~di--al~~G~mLRecik~-----e~la~~i 161 (288)
+.-+|+.|.+..+-...+++....... .-+|+..=.+++..+...-.+... +-.+-..+.++.++ ++.+..
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~-~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~- 94 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDF-PPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADI- 94 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B------HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHH-
T ss_pred CccCHHHHHHHHHHHHHHHHcCCcccc-HHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHH-
Confidence 667899999888888888875521111 112222212555666666554433 23333333333322 111111
Q ss_pred hcchhhHhhhhhccCCCchhhhhHHHHHHHHHhhChhHHHHHHHhhHHHH-HHHHhHhhccCCCceehhchhhHHHHHhc
Q 023043 162 LESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWF-FAEYNSKLLESSNYITRRQAVKLLGDILL 240 (288)
Q Consensus 162 L~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefl~~nyd~F-f~~yn~~Ll~s~NYVTkRQSLKLLgelLl 240 (288)
.+-.+++-+..++=-|+..|-.++..+...=. . ..+. +.... ....+.|=-.|+.++..|..++-
T Consensus 95 ----~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~-~--------~~~~~~~~l~-~~~~~Kn~~vR~~~~~~l~~~l~ 160 (228)
T PF12348_consen 95 ----LLPPLLKKLGDSKKFIREAANNALDAIIESCS-Y--------SPKILLEILS-QGLKSKNPQVREECAEWLAIILE 160 (228)
T ss_dssp ----HHHHHHHGGG---HHHHHHHHHHHHHHHTTS--H----------HHHHHHHH-HHTT-S-HHHHHHHHHHHHHHHT
T ss_pred ----HHHHHHHHHccccHHHHHHHHHHHHHHHHHCC-c--------HHHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHHH
Confidence 12233343344444466777777777665321 0 1233 44443 67889999999999999988874
Q ss_pred cCC-chHHHHHhcCChhhHHHHHHHhhCCCCCcccccceeeeee
Q 023043 241 DRS-NSVVMTRYVSSRENLRILMNLLRQEYPDRSISCFQAVCCE 283 (288)
Q Consensus 241 dr~-N~~vM~rYi~~~~NLKl~M~LL~d~sknIQ~EAFhVf~~~ 283 (288)
.-. +...+..-..=+.-.+.+...|.|++..++-.|..+|..+
T Consensus 161 ~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l 204 (228)
T PF12348_consen 161 KWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWAL 204 (228)
T ss_dssp T-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHH
T ss_pred HccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 332 1233222111156778999999999999988777666544
No 22
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.01 E-value=1.3e+02 Score=31.46 Aligned_cols=113 Identities=18% Similarity=0.192 Sum_probs=69.1
Q ss_pred HHHHHhhchHHHHHhhCCCCChhhhhhHHHHHHHHhhhcccCccchhhHhhcCHhHHHHHHHhcc--Cchhhh-------
Q 023043 72 TAEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYE--NTDMAL------- 142 (288)
Q Consensus 72 a~ei~~~dll~~Li~~l~~L~fE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~peil~~L~~gY~--~~dial------- 142 (288)
++.+...++++.|+..|..=||..||.++-..+|+.- ++..--+.||..+. ++.-|+.-.. +.++..
T Consensus 357 iqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts---~g~~~qi~yLv~~g-iI~plcdlL~~~D~~ii~v~Ld~l~ 432 (514)
T KOG0166|consen 357 IQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTS---SGTPEQIKYLVEQG-IIKPLCDLLTCPDVKIILVALDGLE 432 (514)
T ss_pred HHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcc---cCCHHHHHHHHHcC-CchhhhhcccCCChHHHHHHHHHHH
Confidence 4678888999999999999999999999999999875 44434467776654 4444433222 222222
Q ss_pred ---hHHHHHHHHHHHHHHHHHHhcchhhHhhhhhccCCCchhhhhHHHHH
Q 023043 143 ---HYGAMLRECIRHQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATF 189 (288)
Q Consensus 143 ---~~G~mLRecik~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~Tf 189 (288)
-.|.+..+-=. +.++.+|=+.+...++-..=...|=||..-|+...
T Consensus 433 nil~~~e~~~~~~~-n~~~~~IEe~ggldkiE~LQ~hen~~Iy~~A~~II 481 (514)
T KOG0166|consen 433 NILKVGEAEKNRGT-NPLAIMIEEAGGLDKIENLQSHENEEIYKKAYKII 481 (514)
T ss_pred HHHHHHHHhccccc-cHHHHHHHHccChhHHHHhhccccHHHHHHHHHHH
Confidence 22222221111 45566666666666655444455556665555543
No 23
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=52.71 E-value=1e+02 Score=26.67 Aligned_cols=82 Identities=18% Similarity=0.297 Sum_probs=53.5
Q ss_pred hhHhhhhhccCCCchhhhhHHHHHHHHHhh-ChhHHHHHHHhhHHHHHHHHhHhhccCC-----CceehhchhhHHHHHh
Q 023043 166 HMKKFFDYIQLPNFDIAADAAATFKELLTR-HKSTVAEFLSKNYDWFFAEYNSKLLESS-----NYITRRQAVKLLGDIL 239 (288)
Q Consensus 166 ~f~~fF~yv~~~~FdiasDAf~TfkelLt~-Hk~lvaefl~~nyd~Ff~~yn~~Ll~s~-----NYVTkRQSLKLLgelL 239 (288)
.|+.+...+.-++=+|++-|-.-|.+++.+ ++..+ .+++-.....+| .-.+.+ +.-.++.-.+.|-+.+
T Consensus 64 l~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~~~~~~i----~~~~~e~i~~l~-~~~~~~~~~~~~~~~~~~I~~fll~~i 138 (178)
T PF12717_consen 64 LFSRILKLLVDENPEIRSLARSFFSELLKKRNPNII----YNNFPELISSLN-NCYEHPVYGPLSREKRKKIYKFLLDFI 138 (178)
T ss_pred hhHHHHHHHcCCCHHHHHHHHHHHHHHHHhccchHH----HHHHHHHHHHHh-CccccccccccCHHHHHHHHHHHHHHc
Confidence 458999999999999999999999999998 66655 344444444554 333322 3334455555555555
Q ss_pred c-cCCchHHHHHhc
Q 023043 240 L-DRSNSVVMTRYV 252 (288)
Q Consensus 240 l-dr~N~~vM~rYi 252 (288)
- |+..+++..|..
T Consensus 139 ~~d~~~~~l~~kl~ 152 (178)
T PF12717_consen 139 DKDKQKESLVEKLC 152 (178)
T ss_pred CcHHHHHHHHHHHH
Confidence 5 555555555443
No 24
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=51.30 E-value=1.5e+02 Score=25.12 Aligned_cols=79 Identities=20% Similarity=0.359 Sum_probs=55.8
Q ss_pred HhcchhhHhhhhhccCCCchhhhhHHHHHHHHHhhChhHHHHHHHhhHHHHHHHHhHhhccCCC--ceehhchhhHHHHH
Q 023043 161 VLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSN--YITRRQAVKLLGDI 238 (288)
Q Consensus 161 iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefl~~nyd~Ff~~yn~~Ll~s~N--YVTkRQSLKLLgel 238 (288)
++.++...-+.+.+..+.|.|..-+...|.-++.+++ .+|..-.+.|+......++++++ |=-|.-+|..+.++
T Consensus 69 ~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~----~~Lk~ele~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l 144 (168)
T PF12783_consen 69 LLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFR----SHLKLELEVFLSHIILRILESDNSSLWQKELALEILREL 144 (168)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHH
Confidence 3344444455555666779999999999999997765 45566678889887645788776 55556688888888
Q ss_pred hccCC
Q 023043 239 LLDRS 243 (288)
Q Consensus 239 Lldr~ 243 (288)
.-++.
T Consensus 145 ~~~p~ 149 (168)
T PF12783_consen 145 CKDPQ 149 (168)
T ss_pred HhChh
Confidence 75543
No 25
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=50.41 E-value=2.5e+02 Score=27.40 Aligned_cols=141 Identities=16% Similarity=0.240 Sum_probs=97.4
Q ss_pred HHHHHHHhhchHHHHHhhCCCCChhhhhhHHHHHHHHhhhcccCccchhhHhhcCHhHHHHHHHhccCchhh-------h
Q 023043 70 QLTAEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYENTDMA-------L 142 (288)
Q Consensus 70 qLa~ei~~~dll~~Li~~l~~L~fE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~peil~~L~~gY~~~dia-------l 142 (288)
.++.-+..++.+..+......=.||.-=|+-..|..++-+. +..+.+||..|-+-++....+-=..+-. =
T Consensus 155 ~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~h---k~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslk 231 (335)
T PF08569_consen 155 SLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRH---KKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLK 231 (335)
T ss_dssp HHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSS---HHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHH
T ss_pred HHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHH
Confidence 35555556666777778888889999999999999988753 2356889988876665544333222222 2
Q ss_pred hHHHHHHHHHHHHHHHHHHhcchhhHhhhhhccCCCchhhhhHHHHHHHHHhh-Ch-hHHHHHHHhhHHHHHH
Q 023043 143 HYGAMLRECIRHQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTR-HK-STVAEFLSKNYDWFFA 213 (288)
Q Consensus 143 ~~G~mLRecik~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~-Hk-~lvaefl~~nyd~Ff~ 213 (288)
..|.+|-+=.-++.+.+|+=..+.+.-+...+..++=-|..+||..||-...+ || +-|.+.|..|=++...
T Consensus 232 LL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~~I~~iL~~Nr~kLl~ 304 (335)
T PF08569_consen 232 LLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPPPIVDILIKNREKLLR 304 (335)
T ss_dssp HHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHH
Confidence 34666666556677778887777788777888888888999999999987764 33 5677999988776443
No 26
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=48.75 E-value=2.5e+02 Score=31.23 Aligned_cols=23 Identities=30% Similarity=0.576 Sum_probs=19.6
Q ss_pred HHHHHhhHHHHHHHHhHhhccCCC
Q 023043 201 AEFLSKNYDWFFAEYNSKLLESSN 224 (288)
Q Consensus 201 aefl~~nyd~Ff~~yn~~Ll~s~N 224 (288)
.||+++|-+.|...+. ++++.+|
T Consensus 225 PEFFEdnm~~wM~~F~-k~l~~~~ 247 (960)
T KOG1992|consen 225 PEFFEDNMKTWMGAFH-KLLTYDN 247 (960)
T ss_pred hHHHHhhHHHHHHHHH-HHHhccC
Confidence 3899999999999996 8888655
No 27
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=48.28 E-value=63 Score=20.96 Aligned_cols=37 Identities=16% Similarity=0.213 Sum_probs=32.1
Q ss_pred HHHHHHhhchHHHHHhhCCCCChhhhhhHHHHHHHHh
Q 023043 71 LTAEFFRENTLRLLITCLPKLNLEARKDATQVVANLQ 107 (288)
Q Consensus 71 La~ei~~~dll~~Li~~l~~L~fE~RKdv~~If~~ll 107 (288)
-.+.+...+.++.|+..|..-+.+.++.++-...|+-
T Consensus 4 ~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 4 NKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 4566788999999999999999999999988887764
No 28
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=44.63 E-value=85 Score=25.60 Aligned_cols=91 Identities=19% Similarity=0.208 Sum_probs=47.3
Q ss_pred CCCCCCcHHHHHHHHHHHHhhc----hHHHHHhhC---CCCChhhhhhHHHHHHHHhhhcccCccchhhHhhcCHhHHHH
Q 023043 58 NSESEPVSEACAQLTAEFFREN----TLRLLITCL---PKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDI 130 (288)
Q Consensus 58 ~~e~~p~~e~~~qLa~ei~~~d----ll~~Li~~l---~~L~fE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~peil~~ 130 (288)
+++..|.+....+|++..++++ ++..|...| +.=.+-..-.+-.+...|++. +..-.++.+..+-++|..
T Consensus 14 ~d~~gp~~~~l~eIa~~t~~~~~~~~I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~n---G~~~~~~~~~~~~~~I~~ 90 (125)
T PF01417_consen 14 NDPWGPPGKLLAEIAQLTYNSKDCQEIMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKN---GSERFVDELRDHIDIIRE 90 (125)
T ss_dssp SSSSS--HHHHHHHHHHTTSCHHHHHHHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHH---S-HHHHHHHHHTHHHHHG
T ss_pred CCCCCcCHHHHHHHHHHHhccccHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHH---CCHHHHHHHHHHHHHHhh
Confidence 4455788888999999988843 344455555 333333333444455555552 222346666667677777
Q ss_pred HHHhccCch-hhhhHHHHHHHHH
Q 023043 131 LIAGYENTD-MALHYGAMLRECI 152 (288)
Q Consensus 131 L~~gY~~~d-ial~~G~mLReci 152 (288)
| ..|..+| -.-..|.-+|+-.
T Consensus 91 l-~~f~~~d~~g~d~~~~VR~~A 112 (125)
T PF01417_consen 91 L-QDFQYVDPKGKDQGQNVREKA 112 (125)
T ss_dssp G-GG---BBTTSTBHHHHHHHHH
T ss_pred c-ceeeccCCCCccHHHHHHHHH
Confidence 6 3333222 2444555566544
No 29
>PF07304 SRA1: Steroid receptor RNA activator (SRA1); InterPro: IPR009917 This entry consists of several hypothetical mammalian steroid receptor RNA activator proteins. The SRA-RNAs encode stable proteins that are widely expressed and upregulated in breast cancer cell lines. SRA-RNA is a steroid receptor co-activator which acts as a functional RNA. This domain is also found at the C terminus of Sec31, a component of the coat protein complex II (COPII, which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). COPII has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. ; PDB: 2YRU_A.
Probab=44.40 E-value=67 Score=27.93 Aligned_cols=40 Identities=20% Similarity=0.230 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHhhhccCCCCCCcHHHHHHHHHHHHhhch
Q 023043 41 MAELCKNIRELKSILYGNSESEPVSEACAQLTAEFFRENT 80 (288)
Q Consensus 41 ~eei~K~L~~mK~il~G~~e~~p~~e~~~qLa~ei~~~dl 80 (288)
.+|+.|.|.-+-.-+-.+.=..|..+...+|++++-+.|+
T Consensus 67 ~~D~~KRL~iLfd~ln~g~Ls~~v~~~L~~L~~aL~~~d~ 106 (157)
T PF07304_consen 67 VDDIEKRLNILFDHLNNGKLSKPVVDKLHQLAQALQARDY 106 (157)
T ss_dssp HHHHHHHHHHHHHHHHHT-S-HHHHHHHHHHHHHHHHT-H
T ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCH
Confidence 5899999999988887655566777888899988877765
No 30
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=44.22 E-value=8.5 Score=28.37 Aligned_cols=45 Identities=24% Similarity=0.330 Sum_probs=28.8
Q ss_pred hccCCCceehhchhhHHHHHhccCCchHHHHHhcCChhhHHHHHHHhhCCCCCcccccc
Q 023043 219 LLESSNYITRRQAVKLLGDILLDRSNSVVMTRYVSSRENLRILMNLLRQEYPDRSISCF 277 (288)
Q Consensus 219 Ll~s~NYVTkRQSLKLLgelLldr~N~~vM~rYi~~~~NLKl~M~LL~d~sknIQ~EAF 277 (288)
|..++|.-.|+.+++.|| .+.+++-+..+..+|+|++..++..|.
T Consensus 8 l~~~~~~~vr~~a~~~L~--------------~~~~~~~~~~L~~~l~d~~~~vr~~a~ 52 (88)
T PF13646_consen 8 LQNDPDPQVRAEAARALG--------------ELGDPEAIPALIELLKDEDPMVRRAAA 52 (88)
T ss_dssp HHTSSSHHHHHHHHHHHH--------------CCTHHHHHHHHHHHHTSSSHHHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHH--------------HcCCHhHHHHHHHHHcCCCHHHHHHHH
Confidence 336777777777777777 233445566666666776666665553
No 31
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=43.93 E-value=1.9e+02 Score=24.34 Aligned_cols=85 Identities=11% Similarity=0.037 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHhh-----chHHHHHhhCCCCChhhhhhHHHHHHHHhhhcccCccchhhHhhcCHhHHHHHHHhccCch
Q 023043 65 SEACAQLTAEFFRE-----NTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYENTD 139 (288)
Q Consensus 65 ~e~~~qLa~ei~~~-----dll~~Li~~l~~L~fE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~peil~~L~~gY~~~d 139 (288)
--...+||+..+.+ +++..|...|..=+--.+-.+-.|...|.+. ++...+.++..|..++..+...-.-||
T Consensus 19 gy~~~Eia~~t~~s~~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~---G~~~f~~~~~~~~~~Ik~~~~f~g~~D 95 (122)
T cd03572 19 GYLYEEIAKLTRKSVGSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEK---GNSDFKRELQRNSAQIRECANYKGPPD 95 (122)
T ss_pred hHHHHHHHHHHHcCHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhh---CCHHHHHHHHHhHHHHHHHHHcCCCCC
Confidence 35566777777775 4567777777776655656677788888774 344568899999999999854333233
Q ss_pred --hhhhHHHHHHHHH
Q 023043 140 --MALHYGAMLRECI 152 (288)
Q Consensus 140 --ial~~G~mLReci 152 (288)
-+-.-|...|+-.
T Consensus 96 p~~Gd~~~~~VR~~A 110 (122)
T cd03572 96 PLKGDSLNEKVREEA 110 (122)
T ss_pred cccCcchhHHHHHHH
Confidence 5566778888655
No 32
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.46 E-value=97 Score=28.62 Aligned_cols=131 Identities=24% Similarity=0.400 Sum_probs=66.9
Q ss_pred CCCCCC-CCCCChHHHHHHHHHHHHHhhcCCCchhhhhHHHH-HHHHHHHHHHHhhhccCCCCCCcHHHHHHHHHHHHhh
Q 023043 1 MKGLFK-SKPRTPVDIVRQTRDLIIYANRSADVRESKREDKM-AELCKNIRELKSILYGNSESEPVSEACAQLTAEFFRE 78 (288)
Q Consensus 1 M~~lF~-~~~k~P~elVr~l~e~l~~L~~~~~~~~~K~~~k~-eei~K~L~~mK~il~G~~e~~p~~e~~~qLa~ei~~~ 78 (288)
|.-+|+ ++||.|.- +|.|+...++..+..- .++-.|+ .|++|+=.+|+.+=-| |....+.|=|-.+.+.
T Consensus 1 MnRiFG~~k~k~p~p---sL~dai~~v~~r~dSv-e~KIskLDaeL~k~~~Qi~k~R~g-----paq~~~KqrAlrVLkQ 71 (218)
T KOG1655|consen 1 MNRIFGRGKPKEPPP---SLQDAIDSVNKRSDSV-EKKISKLDAELCKYKDQIKKTRPG-----PAQNALKQRALRVLKQ 71 (218)
T ss_pred CcccccCCCCCCCCh---hHHHHHHHHHHhhhhH-HHHHHHHHHHHHHHHHHHHhcCCC-----cchhHHHHHHHHHHHH
Confidence 667895 55788854 4556666665533212 2233334 5899999999988333 4445555544444332
Q ss_pred c--------hHHHHHhhCCC--CChhhhhhHHHHHHHHhh--hc--ccCccc-----------hhhHhhcCHhHHHHHHH
Q 023043 79 N--------TLRLLITCLPK--LNLEARKDATQVVANLQR--QQ--VHSKLI-----------ASDYLEANIDLLDILIA 133 (288)
Q Consensus 79 d--------ll~~Li~~l~~--L~fE~RKdv~~If~~llr--~~--~~~r~p-----------~v~Yl~~~peil~~L~~ 133 (288)
. -|..=--||.. +.-|+-||..+-.+.+-- .. ....-. ..+++...-||=..|-+
T Consensus 72 KK~yE~q~d~L~~QsfNMeQa~~t~e~LKdtq~Tv~AmK~~~k~mK~~ykkvnId~IedlQDem~Dlmd~a~EiQE~Lgr 151 (218)
T KOG1655|consen 72 KKMYENQKDSLDQQSFNMEQANFTAESLKDTQATVAAMKDTNKEMKKQYKKVNIDKIEDLQDEMEDLMDQADEIQEVLGR 151 (218)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 2 12222222222 222455665555544421 00 011111 13455556666677777
Q ss_pred hccCchh
Q 023043 134 GYENTDM 140 (288)
Q Consensus 134 gY~~~di 140 (288)
-|..|||
T Consensus 152 ~y~~pei 158 (218)
T KOG1655|consen 152 NYNTPDI 158 (218)
T ss_pred ccCCCCc
Confidence 7887773
No 33
>PF11262 Tho2: Transcription factor/nuclear export subunit protein 2; InterPro: IPR021418 THO and TREX form a eukaryotic complex which functions in messenger ribonucleoprotein metabolism and plays a role in preventing the transcription-associated genetic instability [],[]. Tho2, along with four other subunits forms THO []. This entry represents a conserved domain found towards the C terminus of these proteins.
Probab=40.57 E-value=3.3e+02 Score=25.92 Aligned_cols=168 Identities=21% Similarity=0.287 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHhhhccCCCCCCcHHHHHHHHHHHHhhchHHHHHhhCCCCChhhhhhHHHHHH--HHhhhcccCccchhh
Q 023043 42 AELCKNIRELKSILYGNSESEPVSEACAQLTAEFFRENTLRLLITCLPKLNLEARKDATQVVA--NLQRQQVHSKLIASD 119 (288)
Q Consensus 42 eei~K~L~~mK~il~G~~e~~p~~e~~~qLa~ei~~~dll~~Li~~l~~L~fE~RKdv~~If~--~llr~~~~~r~p~v~ 119 (288)
+.+-+.|++.|.-.. ...+++++.. +..+.+.=+++-.+.. ++ |+.-... .++....-..+.++.
T Consensus 77 ~~v~~~L~~~k~~wf----~~~~~~~i~~-~~~flq~Ci~PR~~~S----~~----DA~ycakFi~~lh~~~tp~F~~l~ 143 (298)
T PF11262_consen 77 EKVKKRLQEEKDSWF----SSKDPEKIEA-ITAFLQHCILPRALFS----PF----DALYCAKFIKLLHELGTPNFSTLS 143 (298)
T ss_pred HHHHHHHHHhhhhhh----ccCChhhHHH-HHHHHHHHHHHHhhCC----HH----HHHHHHHHHHHHHhcCCCCCCHHH
Confidence 456677777776666 2233444432 4444444345544443 22 2222221 122221122234455
Q ss_pred Hhhc--CHhHHHHHHHhccCchhhhhHHHHHHHHHHHHHHHHHHhcchhhHhhhhhccCCCchhhhhH-------HHHHH
Q 023043 120 YLEA--NIDLLDILIAGYENTDMALHYGAMLRECIRHQSVARYVLESQHMKKFFDYIQLPNFDIAADA-------AATFK 190 (288)
Q Consensus 120 Yl~~--~peil~~L~~gY~~~dial~~G~mLRecik~e~la~~iL~~~~f~~fF~yv~~~~FdiasDA-------f~Tfk 190 (288)
++-. +..+|..++...... =|-+.|.-|.+.++ .+.+.-=..+.|.+-- -..|.|-..-++ ++.|+
T Consensus 144 ~~d~lf~~~~l~~~ifscTe~-EA~nlG~Fl~~iL~--~l~~W~~d~~~f~~e~--~~~pGF~~~~~~~~~~~l~~~~f~ 218 (298)
T PF11262_consen 144 LYDRLFNSKMLSPLIFSCTEN-EAENLGRFLNEILE--DLNRWHRDEEVFEKEC--ANLPGFATTFKSKPSDFLSYEDFR 218 (298)
T ss_pred HHHHHHhhhhhhhHHhccCHH-HHHHHHHHHHHHHH--HHHHHHhChHHHHHHc--cCCCchhhhccccccccCCHHHHH
Confidence 4433 344555555554322 24455555554442 1222111111121111 245556544433 55665
Q ss_pred HHHhh-ChhHHHHHHHhhHHHHHHHHhHhhccCCCceehhchhhHHHHHhc
Q 023043 191 ELLTR-HKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLLGDILL 240 (288)
Q Consensus 191 elLt~-Hk~lvaefl~~nyd~Ff~~yn~~Ll~s~NYVTkRQSLKLLgelLl 240 (288)
.++-+ |+.+... . ...|.|+||+..|=+|=.|..++-
T Consensus 219 ~~~~kWh~~i~~~------------l-~~~L~s~eym~iRNai~vL~~i~~ 256 (298)
T PF11262_consen 219 KVLYKWHKRITKA------------L-ISCLESKEYMHIRNAIIVLKKISP 256 (298)
T ss_pred HHHHHHHHHHHHH------------H-HHHhcchhHHHHHHHHHHHHHHHh
Confidence 55443 5555443 3 256799999999999999988873
No 34
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.47 E-value=5.3e+02 Score=28.64 Aligned_cols=197 Identities=18% Similarity=0.246 Sum_probs=98.6
Q ss_pred HHHHHhhhccCCCCCCcHHHHHHHHHHH--Hhhc----hHHHHHhhCCCCChhhhh-hHHHHHHHHhhhcc-----cCcc
Q 023043 48 IRELKSILYGNSESEPVSEACAQLTAEF--FREN----TLRLLITCLPKLNLEARK-DATQVVANLQRQQV-----HSKL 115 (288)
Q Consensus 48 L~~mK~il~G~~e~~p~~e~~~qLa~ei--~~~d----ll~~Li~~l~~L~fE~RK-dv~~If~~llr~~~-----~~r~ 115 (288)
+..||.++.-=-.+|+-|+..--+.... -+.+ +|+.-....|+.+=+++= .=..+.++.+|... =-|.
T Consensus 38 IeamK~ii~~mlnGe~~p~Llm~IiRfvlps~~~elKKLly~ywE~vPKt~~dgkl~~EMILvcna~RkDLQHPNEyiRG 117 (948)
T KOG1058|consen 38 IEAMKKIIALMLNGEDLPSLLMTIIRFVLPSRNHELKKLLYYYWELVPKTDSDGKLLHEMILVCNAYRKDLQHPNEYIRG 117 (948)
T ss_pred HHHHHHHHHHHHcCCCchHHHHHHhheeeccCchHHHHHHHHHHHHccccCCCcccHHHHHHHHHHHhhhccCchHhhcc
Confidence 3445544332222334454444444443 2223 345555667777653321 12233344444221 1234
Q ss_pred chhhHhhc--CHhHHHHHHHhccCchhhhhHHHHHHHHHHHHHH-HH--HHhcchhhHhhhhhccCCCchhhhhHHHH--
Q 023043 116 IASDYLEA--NIDLLDILIAGYENTDMALHYGAMLRECIRHQSV-AR--YVLESQHMKKFFDYIQLPNFDIAADAAAT-- 188 (288)
Q Consensus 116 p~v~Yl~~--~peil~~L~~gY~~~dial~~G~mLRecik~e~l-a~--~iL~~~~f~~fF~yv~~~~FdiasDAf~T-- 188 (288)
.|.++|++ .||++.-|+. -+|.|+.|.-- .| -+|.=-..|+-|+++=-..=|+..++..+
T Consensus 118 ~TLRFLckLkE~ELlepl~p-------------~IracleHrhsYVRrNAilaifsIyk~~~~L~pDapeLi~~fL~~e~ 184 (948)
T KOG1058|consen 118 STLRFLCKLKEPELLEPLMP-------------SIRACLEHRHSYVRRNAILAIFSIYKNFEHLIPDAPELIESFLLTEQ 184 (948)
T ss_pred hhhhhhhhcCcHHHhhhhHH-------------HHHHHHhCcchhhhhhhheeehhHHhhhhhhcCChHHHHHHHHHhcc
Confidence 56888988 6999998864 35778765421 11 11111123444444433333444444333
Q ss_pred --------HHHHHhhChhHHHHHHHhhHHHHHHHHhHhhccCCCceehhchhhH-HHHHhccC--CchHHHHHhcCChhh
Q 023043 189 --------FKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKL-LGDILLDR--SNSVVMTRYVSSREN 257 (288)
Q Consensus 189 --------fkelLt~Hk~lvaefl~~nyd~Ff~~yn~~Ll~s~NYVTkRQSLKL-LgelLldr--~N~~vM~rYi~~~~N 257 (288)
|--|++.-+..+-.||..|.|.+= .+|. +|.+ +-|++-+- .|-.-- ...
T Consensus 185 DpsCkRNAFi~L~~~D~ErAl~Yl~~~idqi~-~~~~-------------~LqlViVE~Irkv~~~~p~~~------~~~ 244 (948)
T KOG1058|consen 185 DPSCKRNAFLMLFTTDPERALNYLLSNIDQIP-SFND-------------SLQLVIVELIRKVCLANPAEK------ARY 244 (948)
T ss_pred CchhHHHHHHHHHhcCHHHHHHHHHhhHhhcc-CccH-------------HHHHHHHHHHHHHHhcCHHHh------hHH
Confidence 344666777777788887776632 2220 1111 12222111 111111 224
Q ss_pred HHHHHHHhhCCCCCcccccc
Q 023043 258 LRILMNLLRQEYPDRSISCF 277 (288)
Q Consensus 258 LKl~M~LL~d~sknIQ~EAF 277 (288)
.+.+|++|...|..+.|||-
T Consensus 245 i~~i~~lL~stssaV~fEaa 264 (948)
T KOG1058|consen 245 IRCIYNLLSSTSSAVIFEAA 264 (948)
T ss_pred HHHHHHHHhcCCchhhhhhc
Confidence 68999999999999999984
No 35
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=36.03 E-value=35 Score=25.02 Aligned_cols=44 Identities=27% Similarity=0.443 Sum_probs=32.2
Q ss_pred HHHHHhHhhccCCCceehhchhhHHHHHhccCCchHHHHHhcCChhhHHHHHHHhhCCC
Q 023043 211 FFAEYNSKLLESSNYITRRQAVKLLGDILLDRSNSVVMTRYVSSRENLRILMNLLRQEY 269 (288)
Q Consensus 211 Ff~~yn~~Ll~s~NYVTkRQSLKLLgelLldr~N~~vM~rYi~~~~NLKl~M~LL~d~s 269 (288)
....+- .++.++|..+|++++.-||.+ .+++-...+..+|.|.+
T Consensus 32 ~~~~L~-~~l~d~~~~vr~~a~~aL~~i--------------~~~~~~~~L~~~l~~~~ 75 (88)
T PF13646_consen 32 AIPALI-ELLKDEDPMVRRAAARALGRI--------------GDPEAIPALIKLLQDDD 75 (88)
T ss_dssp HHHHHH-HHHTSSSHHHHHHHHHHHHCC--------------HHHHTHHHHHHHHTC-S
T ss_pred HHHHHH-HHHcCCCHHHHHHHHHHHHHh--------------CCHHHHHHHHHHHcCCC
Confidence 344553 778999999999999999976 35666666677676654
No 36
>PF06757 Ins_allergen_rp: Insect allergen related repeat, nitrile-specifier detoxification; InterPro: IPR010629 This entry represents several insect specific allergen repeats. These repeats are commonly found in various proteins from cockroaches, fruit flies and mosquitos. It has been suggested that the repeat sequences have evolved by duplication of an ancestral amino acid domain, which may have arisen from the mitochondrial energy transfer proteins []. This family exemplifies a case of novel gene evolution. The case in point is the arms-race between plants and their infective insective herbivores in the area of the glucosinolate-myrosinase system. Brassicas have developed the glucosinolate-myrosinase system as chemical defence mechanism against the insects, and consequently the insects have adapted to produce a detoxifying molecule, nitrile-specifier protein (NSP). NSP is present in the Pieris rapae (Cabbage white butterfly). NSP is structurally different from and has no amino acid homology to any known detoxifying enzymes, and it appears to have arisen by a process of domain and gene duplication of a sequence of unknown function that is widespread in insect species and referred to as insect-allergen-repeat protein. Thus this family is found either as a single domain or as a multiple repeat-domain [].
Probab=34.09 E-value=62 Score=28.31 Aligned_cols=24 Identities=29% Similarity=0.571 Sum_probs=14.4
Q ss_pred HHHHHhcchhhHhhhhhccCCCch
Q 023043 157 VARYVLESQHMKKFFDYIQLPNFD 180 (288)
Q Consensus 157 la~~iL~~~~f~~fF~yv~~~~Fd 180 (288)
..+|+.+|+.|.++++|++.+.|.
T Consensus 24 ~~~Y~~~D~efq~~~~yl~s~~f~ 47 (179)
T PF06757_consen 24 VQRYYLEDAEFQAAVRYLNSSEFK 47 (179)
T ss_pred HHHHHHcCHHHHHHHHHHcChHHH
Confidence 345566666666666666655543
No 37
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=32.96 E-value=3e+02 Score=23.19 Aligned_cols=60 Identities=22% Similarity=0.240 Sum_probs=39.6
Q ss_pred CCCchhhhhHHHHHHHHHhhChhHHHHHHHhhHHHHHHHHhHhhccCCCceehhchhhHHHHHh
Q 023043 176 LPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLLGDIL 239 (288)
Q Consensus 176 ~~~FdiasDAf~TfkelLt~Hk~lvaefl~~nyd~Ff~~yn~~Ll~s~NYVTkRQSLKLLgelL 239 (288)
....++...+...+|.++..+..+ ...+. + ...+..+ ...|.|+++=||.+++.+|+-+-
T Consensus 127 ~~~~~~~~~~l~Clkal~n~~~G~-~~v~~-~-~~~v~~i-~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 127 EEDIDIEHECLRCLKALMNTKYGL-EAVLS-H-PDSVNLI-ALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp TTCHHHHHHHHHHHHHHTSSHHHH-HHHHC-S-SSHHHHH-HHT--TTSHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHccHHHH-HHHHc-C-cHHHHHH-HHHHCCCCHHHHHHHHHHHHHHH
Confidence 355677778888888887766542 23333 2 2234445 37788999999999999998653
No 38
>PF14680 FANCI_HD2: FANCI helical domain 2; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=32.10 E-value=46 Score=30.81 Aligned_cols=46 Identities=20% Similarity=0.470 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHhcchhhHhhhhhccCCCchhhhhHHHHHHHHHhhChhHHH---HHHHhhHHHHHH
Q 023043 145 GAMLRECIRHQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVA---EFLSKNYDWFFA 213 (288)
Q Consensus 145 G~mLRecik~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lva---efl~~nyd~Ff~ 213 (288)
=.+||-|+-++.-.|.+||.. |-+++++.+.++. ++|..|+..||.
T Consensus 36 lg~LRRCL~QQa~VR~~LY~g-----------------------l~~~v~~n~~l~~~iLd~L~~hf~~y~~ 84 (234)
T PF14680_consen 36 LGILRRCLTQQADVRLMLYEG-----------------------LYDVVTRNPQLAPHILDMLLSHFKQYYE 84 (234)
T ss_dssp HHHHHGGGGS-HHHHHHHHHH-----------------------HHHHHHHSGGGHHHHHHHHHHHHHHHB-
T ss_pred HHHHHHHhcChHHHHHHHHHH-----------------------HHHHHHcCcccHHHHHHHHHHHHHHHhC
Confidence 357899999999999999873 4456677776666 666788887776
No 39
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=31.65 E-value=28 Score=23.86 Aligned_cols=47 Identities=26% Similarity=0.326 Sum_probs=36.2
Q ss_pred ehhchhhHHHHHhccCCchHHHHHhcCChhhHHHHHHHhhCCCCCcccccc
Q 023043 227 TRRQAVKLLGDILLDRSNSVVMTRYVSSRENLRILMNLLRQEYPDRSISCF 277 (288)
Q Consensus 227 TkRQSLKLLgelLldr~N~~vM~rYi~~~~NLKl~M~LL~d~sknIQ~EAF 277 (288)
+|+.++.-||+ +-......+..|+ ++-+..++.+|+|++..++-.|.
T Consensus 3 vR~~A~~aLg~--l~~~~~~~~~~~~--~~~~~~L~~~L~d~~~~VR~~A~ 49 (55)
T PF13513_consen 3 VRRAAAWALGR--LAEGCPELLQPYL--PELLPALIPLLQDDDDSVRAAAA 49 (55)
T ss_dssp HHHHHHHHHHC--TTTTTHHHHHHHH--HHHHHHHHHHTTSSSHHHHHHHH
T ss_pred HHHHHHHHHhh--HhcccHHHHHHHH--HHHHHHHHHHHcCCCHHHHHHHH
Confidence 47888899998 4466777777766 67788889999998887776553
No 40
>PHA02800 hypothetical protein; Provisional
Probab=30.30 E-value=2.9e+02 Score=24.41 Aligned_cols=84 Identities=14% Similarity=0.171 Sum_probs=48.4
Q ss_pred HHhccCchhhhhHHHHHHHHHHHHHHHHHHhcchhh---Hhhhhhcc---CCCchh----hhhHHHHHHHHHhhChhHHH
Q 023043 132 IAGYENTDMALHYGAMLRECIRHQSVARYVLESQHM---KKFFDYIQ---LPNFDI----AADAAATFKELLTRHKSTVA 201 (288)
Q Consensus 132 ~~gY~~~dial~~G~mLRecik~e~la~~iL~~~~f---~~fF~yv~---~~~Fdi----asDAf~TfkelLt~Hk~lva 201 (288)
-+|+.++ +-=.||.+..|..+++.+|+.-.....+ .+.+.-.. .+.-+| --|-....|+++.---.++.
T Consensus 44 WR~ng~~-~~~~cGKIFKELmKyD~lAkk~~~~~d~~~~KNM~l~~Dk~~syvLni~e~~~~D~i~~~Ke~IG~~AILse 122 (161)
T PHA02800 44 WRFNGGK-VDENTGKIFKEFFKYDTLAKWRFSKRDFEQCKNMLLENDKNTSYVLDVPKPEKNDPLLNLKELIGFLAILSE 122 (161)
T ss_pred hhcCCCh-hhHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHhhccccchhccchhhccccHHHHHHHHHHHHHHHHH
Confidence 4555444 5569999999999999999977533333 22221111 111111 13566677777765444444
Q ss_pred HH-HHhhHHHHHHHHh
Q 023043 202 EF-LSKNYDWFFAEYN 216 (288)
Q Consensus 202 ef-l~~nyd~Ff~~yn 216 (288)
|. +..||+..|...|
T Consensus 123 eIk~D~~F~~lFn~l~ 138 (161)
T PHA02800 123 EIKKDTKFFALFNIMN 138 (161)
T ss_pred HhhhhhhHHHHHHHHH
Confidence 54 4566666666665
No 41
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=30.01 E-value=2.5e+02 Score=30.03 Aligned_cols=72 Identities=21% Similarity=0.396 Sum_probs=54.8
Q ss_pred hhHhhhhhccCCCchhhhhHHHHHHHHHhhCh------hHHHHHHHh---------------hHHHHHHHHhHhhccCCC
Q 023043 166 HMKKFFDYIQLPNFDIAADAAATFKELLTRHK------STVAEFLSK---------------NYDWFFAEYNSKLLESSN 224 (288)
Q Consensus 166 ~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk------~lvaefl~~---------------nyd~Ff~~yn~~Ll~s~N 224 (288)
.+..+|.+++.+.-.+.=|+=+-++|+|+.-+ .+|--|++. |--.||...| ..+..+.
T Consensus 5 ~~~~l~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~y~~~t~s~~~~~il~~~~~P~~K~~~~~l~-~~~~~~~ 83 (668)
T PF04388_consen 5 SITELLSLLESNDLSVLEEIKALLQELLNSDREPWLVNGLVDYYLSTNSQRALEILVGVQEPHDKHLFDKLN-DYFVKPS 83 (668)
T ss_pred cHHHHHHHhcCCchhhHHHHHHHHHHHhhccchHHHHHHHHHHHhhcCcHHHHHHHHhcCCccHHHHHHHHH-HHHcCch
Confidence 46778888888888888899999999988764 233344442 2356999998 6777775
Q ss_pred ceehhchhhHHHHHhc
Q 023043 225 YITRRQAVKLLGDILL 240 (288)
Q Consensus 225 YVTkRQSLKLLgelLl 240 (288)
+|-++|-|||.++-
T Consensus 84 --~Rl~~L~Ll~~~v~ 97 (668)
T PF04388_consen 84 --YRLQALTLLGHFVR 97 (668)
T ss_pred --hHHHHHHHHHHHHh
Confidence 58899999999994
No 42
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=27.55 E-value=1.7e+02 Score=27.47 Aligned_cols=63 Identities=25% Similarity=0.330 Sum_probs=40.9
Q ss_pred CchhhhhHHHHHHHHHhhChhHHHHHHHh-------hHHHHHHHHhHhhccCCCceehhchhhHHHHHhccCCch
Q 023043 178 NFDIAADAAATFKELLTRHKSTVAEFLSK-------NYDWFFAEYNSKLLESSNYITRRQAVKLLGDILLDRSNS 245 (288)
Q Consensus 178 ~FdiasDAf~TfkelLt~Hk~lvaefl~~-------nyd~Ff~~yn~~Ll~s~NYVTkRQSLKLLgelLldr~N~ 245 (288)
+-|+--=....+-|++.-++..+.-|+.. .|..|+ +++++++-.+..+|.++|+.++..+...
T Consensus 70 ~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl-----~ll~~~D~~i~~~a~~iLt~Ll~~~~~~ 139 (312)
T PF03224_consen 70 NDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFL-----KLLDRNDSFIQLKAAFILTSLLSQGPKR 139 (312)
T ss_dssp -HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHH-----HH-S-SSHHHHHHHHHHHHHHHTSTTT-
T ss_pred cHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHH-----HHhcCCCHHHHHHHHHHHHHHHHcCCcc
Confidence 33333344567788888888666655551 355555 5788899999999999999999776543
No 43
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=26.32 E-value=2.5e+02 Score=26.42 Aligned_cols=96 Identities=18% Similarity=0.221 Sum_probs=53.8
Q ss_pred hhHhhhhhccCCCchhhhhHHHHHHHHHhhChhHHHHHHHhhHHHHHHHHhHhhccCCCceehhchhhHHHHHhccCCch
Q 023043 166 HMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLLGDILLDRSNS 245 (288)
Q Consensus 166 ~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefl~~nyd~Ff~~yn~~Ll~s~NYVTkRQSLKLLgelLldr~N~ 245 (288)
.|..|+...+.+.=-|.-=|...+-.++...+.--...-..-...||+... ..+++++-=...-++..|+++|-.+.+.
T Consensus 106 ~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~-~~l~~~~~~~~~~av~~L~~LL~~~~~R 184 (312)
T PF03224_consen 106 PYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLS-SQLSSSDSELQYIAVQCLQNLLRSKEYR 184 (312)
T ss_dssp -HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH--TT-HHHH---HHHHHHHHHHHTSHHHH
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHH-HhhcCCCcchHHHHHHHHHHHhCcchhH
Confidence 466777777766555555666666666664332222211222345665553 5555532212256789999999666655
Q ss_pred HHHHHhcCChhhHHHHHHHhh
Q 023043 246 VVMTRYVSSRENLRILMNLLR 266 (288)
Q Consensus 246 ~vM~rYi~~~~NLKl~M~LL~ 266 (288)
.+ |+. .+.+..++.+|+
T Consensus 185 ~~---f~~-~~~v~~l~~iL~ 201 (312)
T PF03224_consen 185 QV---FWK-SNGVSPLFDILR 201 (312)
T ss_dssp HH---HHT-HHHHHHHHHHHH
T ss_pred HH---HHh-cCcHHHHHHHHH
Confidence 55 444 999999999993
No 44
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=26.25 E-value=6.3e+02 Score=24.79 Aligned_cols=103 Identities=15% Similarity=0.304 Sum_probs=62.3
Q ss_pred HhHHHHHHHhccCchhhhhHHHHHHHHHHHHHHHHHHhcchhhHhhhhhc-cCCCchhhhhHHHHHHHHHhhChhHHHHH
Q 023043 125 IDLLDILIAGYENTDMALHYGAMLRECIRHQSVARYVLESQHMKKFFDYI-QLPNFDIAADAAATFKELLTRHKSTVAEF 203 (288)
Q Consensus 125 peil~~L~~gY~~~dial~~G~mLRecik~e~la~~iL~~~~f~~fF~yv-~~~~FdiasDAf~TfkelLt~Hk~lvaef 203 (288)
+.+....+..-+++.|-...=.+|-.++..+.... .+..+.+|+ +.+..++..++..++..+-.++
T Consensus 305 ~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~n~~~------Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~------- 371 (526)
T PF01602_consen 305 QSLILFFLLYDDDPSIRKKALDLLYKLANESNVKE------ILDELLKYLSELSDPDFRRELIKAIGDLAEKF------- 371 (526)
T ss_dssp HHHHHHHHHCSSSHHHHHHHHHHHHHH--HHHHHH------HHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH-------
T ss_pred hhhhhheecCCCChhHHHHHHHHHhhcccccchhh------HHHHHHHHHHhccchhhhhhHHHHHHHHHhcc-------
Confidence 33333333333445555544445554444333333 456788888 6778888888888888765555
Q ss_pred HHhhHHHHHHHHhHhhccCCCceehhchhhHHHHHhccC
Q 023043 204 LSKNYDWFFAEYNSKLLESSNYITRRQAVKLLGDILLDR 242 (288)
Q Consensus 204 l~~nyd~Ff~~yn~~Ll~s~NYVTkRQSLKLLgelLldr 242 (288)
...++|+++..- +++..++..+...++--+.+++-+-
T Consensus 372 -~~~~~~~v~~l~-~ll~~~~~~~~~~~~~~i~~ll~~~ 408 (526)
T PF01602_consen 372 -PPDAEWYVDTLL-KLLEISGDYVSNEIINVIRDLLSNN 408 (526)
T ss_dssp -GSSHHHHHHHHH-HHHHCTGGGCHCHHHHHHHHHHHHS
T ss_pred -CchHHHHHHHHH-HhhhhccccccchHHHHHHHHhhcC
Confidence 566778887775 7777655555778888888887543
No 45
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=24.09 E-value=8.9e+02 Score=28.17 Aligned_cols=96 Identities=18% Similarity=0.154 Sum_probs=48.8
Q ss_pred CCCCChHHHHHHHHHHHHHhhcCCCchhhhhHHHHHH-HHHHHHHHHhhh-ccCCCCCCcHHHHHHHHHHHHhhchHHHH
Q 023043 7 SKPRTPVDIVRQTRDLIIYANRSADVRESKREDKMAE-LCKNIRELKSIL-YGNSESEPVSEACAQLTAEFFRENTLRLL 84 (288)
Q Consensus 7 ~~~k~P~elVr~l~e~l~~L~~~~~~~~~K~~~k~ee-i~K~L~~mK~il-~G~~e~~p~~e~~~qLa~ei~~~dll~~L 84 (288)
+++|-|.|++--+.+. .+++.. .+.=++++ +.+|-.++.++- +| ++.- || + -+=|-++++....
T Consensus 862 ~SqkDPkEyLP~L~el-~~m~~~------~rkF~ID~~L~ry~~AL~hLs~~~-~~~~--~e-~---~n~I~kh~Ly~~a 927 (1265)
T KOG1920|consen 862 KSQKDPKEYLPFLNEL-KKMETL------LRKFKIDDYLKRYEDALSHLSECG-ETYF--PE-C---KNYIKKHGLYDEA 927 (1265)
T ss_pred HhccChHHHHHHHHHH-hhchhh------hhheeHHHHHHHHHHHHHHHHHcC-cccc--HH-H---HHHHHhcccchhh
Confidence 5678899998877763 343321 11112333 566666666663 33 1111 11 1 1112233333222
Q ss_pred HhhCCCCChhhhhhHHHHHHHHhhhcccCccch
Q 023043 85 ITCLPKLNLEARKDATQVVANLQRQQVHSKLIA 117 (288)
Q Consensus 85 i~~l~~L~fE~RKdv~~If~~llr~~~~~r~p~ 117 (288)
.-|-+=+-|.+|++..+|...|++..-.+.-+
T Consensus 928 -L~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aa 959 (1265)
T KOG1920|consen 928 -LALYKPDSEKQKVIYEAYADHLREELMSDEAA 959 (1265)
T ss_pred -hheeccCHHHHHHHHHHHHHHHHHhccccHHH
Confidence 22334566778888888888777664444333
No 46
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.84 E-value=9e+02 Score=25.37 Aligned_cols=130 Identities=16% Similarity=0.229 Sum_probs=84.0
Q ss_pred HHHHHHHhhchHHHHHhhCCCCChh-hhhhHHHHHHHHhhhcccCccchhhHhhcCHhHHHHHHHhccCc------hhhh
Q 023043 70 QLTAEFFRENTLRLLITCLPKLNLE-ARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYENT------DMAL 142 (288)
Q Consensus 70 qLa~ei~~~dll~~Li~~l~~L~fE-~RKdv~~If~~llr~~~~~r~p~v~Yl~~~peil~~L~~gY~~~------dial 142 (288)
+.+|++++.+.|+.|...+..-+=+ -||.++=+.+|+-. |+ ...++++... .++..|+++++.. |.|-
T Consensus 312 ~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItA---G~-~~qiqaVida-~l~p~Li~~l~~~ef~~rKEAaw 386 (514)
T KOG0166|consen 312 EQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITA---GN-QEQIQAVIDA-NLIPVLINLLQTAEFDIRKEAAW 386 (514)
T ss_pred HHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhc---CC-HHHHHHHHHc-ccHHHHHHHHhccchHHHHHHHH
Confidence 5788999999998888888877777 47778888888876 22 2346666653 5555555555543 4555
Q ss_pred hHHHHHHHHHHHHHHHHHHhcchhhHhhhhhccCCCchhhh---hHHHHHHHHHhhCh----hHHHHHHHh
Q 023043 143 HYGAMLRECIRHQSVARYVLESQHMKKFFDYIQLPNFDIAA---DAAATFKELLTRHK----STVAEFLSK 206 (288)
Q Consensus 143 ~~G~mLRecik~e~la~~iL~~~~f~~fF~yv~~~~Fdias---DAf~TfkelLt~Hk----~lvaefl~~ 206 (288)
..+...-.+. ...-+||.+.+++..|-+++..+.=++.. ||+.++...--..+ ..++.+++.
T Consensus 387 aIsN~ts~g~--~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe 455 (514)
T KOG0166|consen 387 AISNLTSSGT--PEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAEKNRGTNPLAIMIEE 455 (514)
T ss_pred HHHhhcccCC--HHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHH
Confidence 5555555555 44457788777777777777666555544 55555554333333 566666664
No 47
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=22.72 E-value=7.1e+02 Score=24.17 Aligned_cols=146 Identities=11% Similarity=0.179 Sum_probs=73.8
Q ss_pred hhhhHHHHHHHHhhhcccCccchhhHhhcCHhHHHHHHHhcc--Cch-hhhhHHHHH----HHHHH-HHHHHHHHhcchh
Q 023043 95 ARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYE--NTD-MALHYGAML----RECIR-HQSVARYVLESQH 166 (288)
Q Consensus 95 ~RKdv~~If~~llr~~~~~r~p~v~Yl~~~peil~~L~~gY~--~~d-ial~~G~mL----Recik-~e~la~~iL~~~~ 166 (288)
+|+|...-+..+..+-..+..+--.-|..+-.++.-+++-|+ +++ .-+.-|.++ +-++. .+. ....
T Consensus 111 t~~Dli~FL~~~i~~~~~~k~~~Y~~LVk~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~------~l~a 184 (292)
T PF13929_consen 111 TKEDLISFLKLVIINLSSNKSFNYWDLVKRNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENT------KLNA 184 (292)
T ss_pred cHHHHHHHHHHHHhccccccchHHHHHHHhhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhcccc------chhh
Confidence 477887777777766555544333334555555555666677 665 222222222 22332 111 2236
Q ss_pred hHhhhhhccCCCchhhhhHHHHHHHHHhhChhHHHHHHHhhHHHHHHHHhHhhccCCCceehhchhhHHHHHhccCCchH
Q 023043 167 MKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLLGDILLDRSNSV 246 (288)
Q Consensus 167 f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefl~~nyd~Ff~~yn~~Ll~s~NYVTkRQSLKLLgelLldr~N~~ 246 (288)
+|.+.+|+. .+|+ .+..-.+...++. +-++ .++|+++|+-.. +.+....|-.-=-==.-.=+++.+--...
T Consensus 185 lYEvV~~l~-~t~~-~~l~~~vi~~Il~----~L~~--~~dW~kl~~fW~-~~~~~~~~~~D~rpW~~FI~li~~sgD~~ 255 (292)
T PF13929_consen 185 LYEVVDFLV-STFS-KSLTRNVIISILE----ILAE--SRDWNKLFQFWE-QCIPNSVPGNDPRPWAEFIKLIVESGDQE 255 (292)
T ss_pred HHHHHHHHH-hccc-cCCChhHHHHHHH----HHHh--cccHHHHHHHHH-HhcccCCCCCCCchHHHHHHHHHHcCCHH
Confidence 899999985 4444 2221111211111 1111 268999998886 55555344322111222334445566666
Q ss_pred HHHHhcCCh
Q 023043 247 VMTRYVSSR 255 (288)
Q Consensus 247 vM~rYi~~~ 255 (288)
+|.+.|++.
T Consensus 256 ~~~kiI~~G 264 (292)
T PF13929_consen 256 VMRKIIDDG 264 (292)
T ss_pred HHHHHhhCC
Confidence 777766664
No 48
>PTZ00464 SNF-7-like protein; Provisional
Probab=22.42 E-value=4.3e+02 Score=24.17 Aligned_cols=27 Identities=22% Similarity=0.177 Sum_probs=18.7
Q ss_pred CCCCCCCC----CCChHHHHHHHHHHHHHhh
Q 023043 1 MKGLFKSK----PRTPVDIVRQTRDLIIYAN 27 (288)
Q Consensus 1 M~~lF~~~----~k~P~elVr~l~e~l~~L~ 27 (288)
|..||+++ +.||.|-++.+++.+..|+
T Consensus 1 M~rlFG~~k~~p~~t~~d~~~~l~~r~~~l~ 31 (211)
T PTZ00464 1 MNRLFGKKNKTPKPTLEDASKRIGGRSEVVD 31 (211)
T ss_pred CccccCCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 77899754 2367777777777777664
No 49
>PF12977 DUF3861: Domain of Unknown Function with PDB structure (DUF3861); InterPro: IPR024476 This entry represents a family of proteins of unknown function which are found predominantly in the proteobacteria. The structurally characterised member of this family (Q6D5X8 from SWISSPROT) adopts a novel fold consisting of a long N-terminal beta-hairpin followed by three alpha helices. This structure shows some resemblance to three-helical bundle folds such as the serum albumin-like fold.; PDB: 3CJL_B.
Probab=21.92 E-value=98 Score=25.06 Aligned_cols=37 Identities=22% Similarity=0.435 Sum_probs=23.3
Q ss_pred hhhHHHHHhccCCchHHHHHhcCChhhHHHHHHHhhCCCC
Q 023043 231 AVKLLGDILLDRSNSVVMTRYVSSRENLRILMNLLRQEYP 270 (288)
Q Consensus 231 SLKLLgelLldr~N~~vM~rYi~~~~NLKl~M~LL~d~sk 270 (288)
+|||+||+++.-.+-...- .=.-.++..|.-|+...|
T Consensus 58 GLKLfgevml~~R~~PLF~---~~~P~f~~Fmk~LK~~~k 94 (94)
T PF12977_consen 58 GLKLFGEVMLKNRKHPLFA---DFRPAFREFMKNLKSGVK 94 (94)
T ss_dssp HHHHHHHHHHHTTTSHHHH---TTHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHhccCCcchH---HHHHHHHHHHHHHHhccC
Confidence 6999999998776665432 224556677777766543
No 50
>COG0255 RpmC Ribosomal protein L29 [Translation, ribosomal structure and biogenesis]
Probab=21.77 E-value=1.3e+02 Score=22.94 Aligned_cols=49 Identities=10% Similarity=0.208 Sum_probs=29.3
Q ss_pred CCCChHHHHHHHHHHHHHhhc---CCCchhhhhHHHHHHHHHHHHHHHhhhc
Q 023043 8 KPRTPVDIVRQTRDLIIYANR---SADVRESKREDKMAELCKNIRELKSILY 56 (288)
Q Consensus 8 ~~k~P~elVr~l~e~l~~L~~---~~~~~~~K~~~k~eei~K~L~~mK~il~ 56 (288)
+.+|+.|+...+.|.-..|-. ....+...++.++-++-|.+.+++.++.
T Consensus 9 R~~s~eeL~~~l~eLK~ELf~LR~q~a~g~l~n~~~ir~vRr~IARi~Tv~~ 60 (69)
T COG0255 9 REKSVEELEEELRELKKELFNLRFQLATGQLENPHRIREVRRDIARILTVLR 60 (69)
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 467899998887776333321 1111112233446788888888888764
No 51
>PF14771 DUF4476: Domain of unknown function (DUF4476)
Probab=21.68 E-value=3.2e+02 Score=21.12 Aligned_cols=30 Identities=13% Similarity=0.394 Sum_probs=15.0
Q ss_pred hhhHhhhhhccCCCchhhhhHHHHHHHHHhhC
Q 023043 165 QHMKKFFDYIQLPNFDIAADAAATFKELLTRH 196 (288)
Q Consensus 165 ~~f~~fF~yv~~~~FdiasDAf~TfkelLt~H 196 (288)
..|..|.+-+....|| +|-...++.+..++
T Consensus 8 ~~f~~~~~~lk~~~fd--~dkl~~l~~~~~~~ 37 (95)
T PF14771_consen 8 NDFEQFLEQLKKESFD--SDKLKVLEAAAKTN 37 (95)
T ss_pred HHHHHHHHHHHcCCCc--HHHHHHHHHHHhcC
Confidence 3455555555554444 45555555544443
No 52
>PF06393 BID: BH3 interacting domain (BID); InterPro: IPR010479 Apoptosis, or programmed cell death (PCD), is a common and evolutionarily conserved property of all metazoans []. In many biological processes, apoptosis is required to eliminate supernumerary or dangerous (such as pre-cancerous) cells and to promote normal development. Dysregulation of apoptosis can, therefore, contribute to the development of many major diseases including cancer, autoimmunity and neurodegenerative disorders. In most cases, proteins of the caspase family execute the genetic programme that leads to cell death. Bcl-2 proteins are central regulators of caspase activation, and play a key role in cell death by regulating the integrity of the mitochondrial and endoplasmic reticulum (ER) membranes []. At least 20 Bcl-2 proteins have been reported in mammals, and several others have been identified in viruses. Bcl-2 family proteins fall roughly into three subtypes, which either promote cell survival (anti-apoptotic) or trigger cell death (pro-apoptotic). All members contain at least one of four conserved motifs, termed Bcl-2 Homology (BH) domains. Bcl-2 subfamily proteins, which contain at least BH1 and BH2, promote cell survival by inhibiting the adapters needed for the activation of caspases. Pro-apoptotic members potentially exert their effects by displacing the adapters from the pro-survival proteins; these proteins belong either to the Bax subfamily, which contain BH1-BH3, or to the BH3 subfamily, which mostly only feature BH3 []. Thus, the balance between antagonistic family members is believed to play a role in determining cell fate. Members of the wider Bcl-2 family, which also includes Bcl-x, Bcl-w and Mcl-1, are described by their similarity to Bcl-2 protein, a member of the pro-survival Bcl-2 subfamily []. Full-length Bcl-2 proteins feature all four BH domains, seven alpha-helices, and a C-terminal hydrophobic motif that targets the protein to the outer mitochondrial membrane, ER and nuclear envelope. BID is a member of the Bcl-2 superfamily of proteins that are key regulators of programmed cell death, hence this family is related to the Apoptosis regulator Bcl-2 protein BH domain. BID is a pro-apoptotic member of the Bcl-2 superfamily and as such posses the ability to target intracellular membranes and contains the BH3 death domain. The activity of BID is regulated by a Caspase 8-mediated cleavage event, exposing the BH3 domain and significantly changing the surface charge and hydrophobicity, which causes a change of cellular localisation [].; GO: 0043065 positive regulation of apoptosis, 0005737 cytoplasm; PDB: 2BID_A 1ZY3_B 2KBW_B 1DDB_A 2VOI_B.
Probab=21.46 E-value=2e+02 Score=26.32 Aligned_cols=70 Identities=14% Similarity=0.267 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHhhhccCCCCCCcHHHHHHHHHHHHhhch------------HHHHHhhCCCCChhhhhhHHHHHHHHhh
Q 023043 41 MAELCKNIRELKSILYGNSESEPVSEACAQLTAEFFRENT------------LRLLITCLPKLNLEARKDATQVVANLQR 108 (288)
Q Consensus 41 ~eei~K~L~~mK~il~G~~e~~p~~e~~~qLa~ei~~~dl------------l~~Li~~l~~L~fE~RKdv~~If~~llr 108 (288)
+.+|+..|.+|=.-+-+ +-.|+.|..||+.+-+.++ +..+++..| .|+| +-.+.-+++-+|-
T Consensus 85 ir~IA~qLAqIGD~me~----sI~p~lV~~La~qf~n~~LseEdrr~~LAaavq~lmqt~P-~Dme-~Eka~L~ltMLLa 158 (196)
T PF06393_consen 85 IRRIARQLAQIGDRMER----SIQPSLVNNLAQQFRNSNLSEEDRRRCLAAAVQQLMQTVP-KDME-QEKAMLVLTMLLA 158 (196)
T ss_dssp HHHHHHHHHHHHHHHHC----C-TTTTHHHHHHHHHSCCCCCCCCCHHHHHHHHHHHCCS--STCH-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc----cCCHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHCC-ccHH-HHHHHHHHHHHHH
Confidence 45688888888777764 4567789999999987743 556666664 4666 4457788899998
Q ss_pred hcccCccc
Q 023043 109 QQVHSKLI 116 (288)
Q Consensus 109 ~~~~~r~p 116 (288)
.++-+..|
T Consensus 159 KKVa~htP 166 (196)
T PF06393_consen 159 KKVADHTP 166 (196)
T ss_dssp HHHHHH-T
T ss_pred HHHHHhCc
Confidence 88766655
No 53
>COG0219 CspR Predicted rRNA methylase (SpoU class) [Translation, ribosomal structure and biogenesis]
Probab=21.43 E-value=46 Score=29.35 Aligned_cols=17 Identities=18% Similarity=0.581 Sum_probs=15.7
Q ss_pred CchhhhhHHHHHHHHHH
Q 023043 137 NTDMALHYGAMLRECIR 153 (288)
Q Consensus 137 ~~dial~~G~mLRecik 153 (288)
+|+|.-++|+|+|-|.-
T Consensus 9 ~PeIP~NTGNI~R~ca~ 25 (155)
T COG0219 9 QPEIPPNTGNIIRTCAA 25 (155)
T ss_pred CCCCCCchhHHHHHHHh
Confidence 79999999999999983
No 54
>KOG3230 consensus Vacuolar assembly/sorting protein DID4 [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.25 E-value=2.4e+02 Score=26.14 Aligned_cols=66 Identities=26% Similarity=0.418 Sum_probs=36.0
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHhhcCCCchhhhhHHH-HH-HHHHHHHHHHhhhccCCCCCCcHHHHHHHHHHHHhh
Q 023043 1 MKGLFKSKPRTPVDIVRQTRDLIIYANRSADVRESKREDK-MA-ELCKNIRELKSILYGNSESEPVSEACAQLTAEFFRE 78 (288)
Q Consensus 1 M~~lF~~~~k~P~elVr~l~e~l~~L~~~~~~~~~K~~~k-~e-ei~K~L~~mK~il~G~~e~~p~~e~~~qLa~ei~~~ 78 (288)
|. +|+++ +||+|+.|.-+-.|.+--. +-.+++. ++ +=-|-+..||..-- .-+-+++.-+|..+.+.
T Consensus 1 m~-lFgk~-~tp~e~Lr~nqRal~~a~R-----eleRer~~le~qeKklvaeIKk~AK-----~gq~~A~KimAkdLvRt 68 (224)
T KOG3230|consen 1 MD-LFGKK-KTPAELLRENQRALNKATR-----ELERERQKLELQEKKLVAEIKKTAK-----QGQMDAVKIMAKDLVRT 68 (224)
T ss_pred CC-cccCC-CCHHHHHHHhHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH-----cccHHHHHHHHHHHHHH
Confidence 45 88887 8999999988777775322 2112111 22 22334556665432 23334555566655543
No 55
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=20.19 E-value=5.6e+02 Score=28.76 Aligned_cols=133 Identities=20% Similarity=0.276 Sum_probs=75.3
Q ss_pred HHhhchHHHHHhhCCCCChhhhhhHHHHHHHHhhhcccCccchhhHhhcCHhHHHHHHHhccCchhhhhH------HH--
Q 023043 75 FFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYENTDMALHY------GA-- 146 (288)
Q Consensus 75 i~~~dll~~Li~~l~~L~fE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~peil~~L~~gY~~~dial~~------G~-- 146 (288)
.++..++.+++. .+..-+= .++..++.+-|.--+.+.|+ ++.-|+.--.+.|+--+. ..
T Consensus 85 ~IR~~l~~lii~-s~n~l~i---q~a~avs~IA~~DfPdeWpT---------L~~DL~~~Ls~~D~~tn~~~L~~~h~If 151 (947)
T COG5657 85 LIRDELFSLIIS-SSNQLQI---QNALAVSRIARLDFPDEWPT---------LVPDLLSLLSEKDMVTNENSLRVLHHIF 151 (947)
T ss_pred HHHHHHHHHHHc-ccchHHH---HHHHHHHHHHhccCcccchh---------HHHHHHhhhcccchHHHHHHHHHHHHHH
Confidence 445555544443 3333221 55666666666555556554 233332222222222222 22
Q ss_pred -HHHHHHHHHH------------HHHHHhcchhhHhhhh---hccCCCchhhhhHHHHHHHHHhhChhHHHHHHHhhHHH
Q 023043 147 -MLRECIRHQS------------VARYVLESQHMKKFFD---YIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDW 210 (288)
Q Consensus 147 -mLRecik~e~------------la~~iL~~~~f~~fF~---yv~~~~FdiasDAf~TfkelLt~Hk~lvaefl~~nyd~ 210 (288)
-+|.|.|-++ ++.+++.++.+|.... +--++-|+|+=-+..-+.|+=--|.. +|+++|-+.
T Consensus 152 k~~r~l~Rsd~lf~ei~p~L~~~l~pfl~~~~~~~s~~~~~~~~llslfqv~L~~~r~~~~~~~qdi~---eFfEd~l~~ 228 (947)
T COG5657 152 KRLRRLFRSDALFLEIAPVLLSILCPFLFSSAYFWSMSENLDESLLSLFQVCLKLIRRYYDLGFQDIP---EFFEDNLDK 228 (947)
T ss_pred HHHhhhhccHHHHHHHHHHHHHHHHHHHHhccchhHHhhcchhhHHHHHHHHHHHHHHHHHhcCCChh---HHHHHHHHH
Confidence 2345555443 4667777888887765 44466677755555555555445554 999999999
Q ss_pred HHHHHhHhhccCCC
Q 023043 211 FFAEYNSKLLESSN 224 (288)
Q Consensus 211 Ff~~yn~~Ll~s~N 224 (288)
|.+++- +|++-.|
T Consensus 229 ~m~~F~-klls~~~ 241 (947)
T COG5657 229 FMEHFC-KLLSYSN 241 (947)
T ss_pred HHHHHH-HHHhhcc
Confidence 999994 8887443
No 56
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=20.18 E-value=1.3e+02 Score=24.62 Aligned_cols=77 Identities=22% Similarity=0.334 Sum_probs=53.8
Q ss_pred HHHHHhhHHHHHHHHhHhhccCC---CceehhchhhHHHHHhccCCchHHHHHhcCChhhHHHHHHHhhCC--CCCcccc
Q 023043 201 AEFLSKNYDWFFAEYNSKLLESS---NYITRRQAVKLLGDILLDRSNSVVMTRYVSSRENLRILMNLLRQE--YPDRSIS 275 (288)
Q Consensus 201 aefl~~nyd~Ff~~yn~~Ll~s~---NYVTkRQSLKLLgelLldr~N~~vM~rYi~~~~NLKl~M~LL~d~--sknIQ~E 275 (288)
++||..|.=..+..++..+..+. .|.-|+++++=+|+++- +|-.+|++.- =-||..|+.- .+.+|.+
T Consensus 2 ~~fL~~~~LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~------~~g~~i~~a~--pQI~acL~saL~~~eL~~~ 73 (107)
T smart00802 2 ADFLKDHFLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIK------LMGKHISSAL--PQIMACLQSALEIPELRSL 73 (107)
T ss_pred hHHHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHH------HHHHHHHHHH--HHHHHHHHHHhCchhHHHH
Confidence 67899998777777776666666 78899999999999992 4555555432 2344444432 3448888
Q ss_pred cceeeeeecc
Q 023043 276 CFQAVCCESK 285 (288)
Q Consensus 276 AFhVf~~~~~ 285 (288)
||-+.++|+.
T Consensus 74 al~~W~~~i~ 83 (107)
T smart00802 74 ALRCWHVLIK 83 (107)
T ss_pred HHHHHHHHHH
Confidence 8877777764
Done!