Query 023043
Match_columns 288
No_of_seqs 121 out of 217
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 15:23:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023043.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023043hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1upk_A MO25 protein; transfera 100.0 3E-114 9E-119 820.5 23.1 282 1-287 3-285 (341)
2 4hxt_A De novo protein OR329; 96.9 0.019 6.5E-07 48.1 12.8 197 72-280 37-236 (252)
3 4db8_A Armadillo-repeat protei 96.8 0.0093 3.2E-07 50.7 10.3 196 73-280 48-246 (252)
4 4hxt_A De novo protein OR329; 96.5 0.043 1.5E-06 45.9 12.2 190 80-281 3-195 (252)
5 2jdq_A Importin alpha-1 subuni 95.9 0.23 7.8E-06 45.3 15.1 194 75-281 145-343 (450)
6 1wa5_B Importin alpha subunit; 95.4 0.42 1.4E-05 45.5 15.2 194 76-281 212-408 (530)
7 4db6_A Armadillo repeat protei 95.3 0.076 2.6E-06 43.7 8.8 184 82-278 15-202 (210)
8 4db6_A Armadillo repeat protei 94.7 0.53 1.8E-05 38.6 12.2 159 72-239 47-208 (210)
9 4db8_A Armadillo-repeat protei 94.2 0.63 2.2E-05 39.1 11.8 180 90-281 23-205 (252)
10 1xqr_A HSPBP1 protein; armadil 93.3 4.5 0.00016 36.7 18.7 208 14-241 25-239 (296)
11 4b8j_A Importin subunit alpha- 92.7 0.48 1.6E-05 44.9 9.5 194 76-281 157-354 (528)
12 1wa5_B Importin alpha subunit; 92.4 0.6 2.1E-05 44.4 9.8 193 78-279 256-451 (530)
13 3tpo_A Importin subunit alpha- 92.3 0.47 1.6E-05 45.7 9.0 196 73-280 156-359 (529)
14 2jdq_A Importin alpha-1 subuni 92.1 0.88 3E-05 41.3 10.2 194 75-280 103-300 (450)
15 4fdd_A Transportin-1; heat rep 92.0 5.6 0.00019 40.1 16.8 181 82-280 93-280 (852)
16 4b8j_A Importin subunit alpha- 91.6 1.5 5E-05 41.5 11.5 192 76-280 199-395 (528)
17 2z6g_A B-catenin; FULL-length, 89.3 18 0.00062 36.7 17.9 181 78-270 149-332 (780)
18 4fdd_A Transportin-1; heat rep 88.1 1.4 4.6E-05 44.6 8.5 187 82-281 51-240 (852)
19 1jdh_A Beta-catenin; beta-cate 87.7 2.4 8.1E-05 39.4 9.3 134 137-279 323-483 (529)
20 3now_A UNC-45 protein, SD10334 86.5 11 0.00037 39.5 14.3 195 68-277 484-686 (810)
21 3tpo_A Importin subunit alpha- 85.9 15 0.0005 35.1 14.1 198 73-279 287-491 (529)
22 1ibr_B P95, importin beta-1 su 85.5 20 0.00069 32.1 14.1 143 124-280 126-283 (462)
23 2z6h_A Catenin beta-1, beta-ca 85.0 26 0.0009 34.1 15.6 181 76-269 11-195 (644)
24 2qk2_A LP04448P; mini spindles 84.3 11 0.00037 31.9 11.1 176 84-280 20-200 (242)
25 1jdh_A Beta-catenin; beta-cate 84.3 26 0.00087 32.3 15.2 181 77-269 15-198 (529)
26 1qgr_A Protein (importin beta 83.3 14 0.00048 36.5 12.9 185 80-281 218-433 (876)
27 3ul1_B Importin subunit alpha- 82.1 7.5 0.00026 37.1 10.2 194 74-279 180-381 (510)
28 1u6g_C TIP120 protein, CAND1; 82.0 6.2 0.00021 41.5 10.3 148 80-241 49-205 (1230)
29 3ul1_B Importin subunit alpha- 81.5 37 0.0013 32.2 17.8 184 79-273 232-418 (510)
30 3nmw_A APC variant protein; AR 81.0 15 0.00051 34.1 11.5 165 74-246 165-340 (354)
31 1qgr_A Protein (importin beta 80.0 40 0.0014 33.2 14.8 149 124-281 126-284 (876)
32 3nmz_A APC variant protein; pr 77.5 32 0.0011 33.2 13.0 162 74-243 281-453 (458)
33 3now_A UNC-45 protein, SD10334 76.6 19 0.00067 37.5 11.9 197 72-279 529-731 (810)
34 2bpt_A Importin beta-1 subunit 75.8 63 0.0022 31.7 16.8 182 80-278 225-433 (861)
35 2z6g_A B-catenin; FULL-length, 75.5 60 0.0021 32.9 15.0 160 74-243 483-666 (780)
36 2z6h_A Catenin beta-1, beta-ca 74.8 64 0.0022 31.3 16.2 178 75-268 348-549 (644)
37 1xqr_A HSPBP1 protein; armadil 73.9 19 0.00064 32.6 9.8 131 140-277 56-188 (296)
38 3qml_C Protein SLS1, nucleotid 70.3 12 0.0004 35.2 7.5 52 78-134 70-122 (315)
39 1ibr_B P95, importin beta-1 su 67.4 69 0.0023 28.6 12.4 185 81-282 219-434 (462)
40 2qk2_A LP04448P; mini spindles 67.2 35 0.0012 28.6 9.5 150 90-258 68-222 (242)
41 3grl_A General vesicular trans 66.2 1.2E+02 0.0042 31.0 16.3 151 46-199 81-246 (651)
42 2bpt_A Importin beta-1 subunit 65.5 27 0.00091 34.4 9.5 101 171-280 603-706 (861)
43 1b3u_A Protein (protein phosph 63.8 18 0.00062 33.6 7.6 100 169-281 445-544 (588)
44 3eg5_B Protein diaphanous homo 63.5 74 0.0025 29.9 11.8 103 8-140 64-176 (383)
45 1upk_A MO25 protein; transfera 63.5 96 0.0033 29.3 12.4 140 70-212 155-303 (341)
46 2bnx_A Diaphanous protein homo 60.7 72 0.0024 30.0 11.2 172 8-213 2-209 (386)
47 3ltj_A Alpharep-4; protein eng 59.0 67 0.0023 25.6 10.4 146 78-277 44-190 (201)
48 3ltm_A Alpha-REP4; protein eng 58.1 31 0.0011 27.9 7.3 83 167-278 83-165 (211)
49 2f31_A Diaphanous protein homo 57.7 92 0.0032 26.8 11.1 100 11-140 1-110 (233)
50 1u6g_C TIP120 protein, CAND1; 55.5 77 0.0026 33.2 11.3 192 78-281 254-502 (1230)
51 4hat_C Exportin-1; heat repeat 55.3 66 0.0023 34.1 10.9 79 136-216 816-905 (1023)
52 3ltm_A Alpha-REP4; protein eng 54.2 84 0.0029 25.2 13.1 148 79-279 50-197 (211)
53 2x19_B Importin-13; nuclear tr 53.7 1.9E+02 0.0065 29.2 17.2 93 179-274 787-882 (963)
54 3ltj_A Alpharep-4; protein eng 51.9 89 0.003 24.9 12.1 123 75-238 72-196 (201)
55 3gjx_A Exportin-1; transport, 49.9 74 0.0025 34.2 10.2 79 136-216 842-929 (1073)
56 1w9c_A CRM1 protein, exportin 48.9 1.7E+02 0.0058 27.2 14.6 92 125-216 114-221 (321)
57 2vgl_B AP-2 complex subunit be 47.5 1E+02 0.0034 29.9 10.1 137 80-243 50-192 (591)
58 1vdy_A Hypothetical protein (R 45.2 54 0.0018 27.0 6.6 89 61-152 25-121 (140)
59 1ddb_A Protein (BID); apoptosi 44.2 16 0.00054 32.0 3.3 80 39-124 81-181 (195)
60 1xm9_A Plakophilin 1; armadill 43.7 99 0.0034 28.9 9.1 116 72-193 323-448 (457)
61 1wa5_C Importin alpha RE-expor 41.4 3E+02 0.01 28.0 17.7 103 90-197 48-155 (960)
62 2qk1_A Protein STU2; STU2P, XM 41.1 63 0.0022 27.9 6.8 173 89-277 26-212 (249)
63 1w63_A Adapter-related protein 41.0 2.6E+02 0.009 27.2 15.4 42 173-215 187-228 (618)
64 1xm9_A Plakophilin 1; armadill 38.3 1.2E+02 0.0041 28.3 8.8 130 125-265 5-136 (457)
65 3grl_A General vesicular trans 38.1 29 0.00099 35.5 4.6 60 218-278 129-188 (651)
66 2yru_A Steroid receptor RNA ac 36.6 77 0.0026 25.3 6.1 42 40-81 37-78 (118)
67 3dad_A FH1/FH2 domain-containi 32.1 3.2E+02 0.011 25.6 17.0 139 42-195 133-287 (339)
68 2jqq_A Conserved oligomeric go 31.3 1.4E+02 0.0049 26.1 7.3 64 12-77 74-138 (204)
69 2bid_A Protein (BID); programm 30.8 1.1E+02 0.0038 26.7 6.4 79 40-124 84-183 (197)
70 1w63_A Adapter-related protein 27.0 3.2E+02 0.011 26.5 10.0 99 173-281 321-447 (618)
71 3r1f_A ESX-1 secretion-associa 25.0 84 0.0029 25.0 4.5 97 8-108 25-129 (135)
72 3nmz_A APC variant protein; pr 22.7 5E+02 0.017 24.7 12.4 187 78-276 242-441 (458)
73 1te4_A Conserved protein MTH18 21.3 27 0.00094 26.5 0.8 45 218-276 49-93 (131)
74 2prs_A High-affinity zinc upta 20.6 1.9E+02 0.0066 25.4 6.5 72 9-80 122-224 (284)
75 3ami_A Zinc peptidase; alpha/b 20.1 2.7E+02 0.0093 25.1 7.5 85 11-108 323-410 (445)
76 1b3u_A Protein (protein phosph 20.1 5E+02 0.017 23.7 12.6 178 77-281 400-583 (588)
No 1
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=100.00 E-value=2.6e-114 Score=820.48 Aligned_cols=282 Identities=40% Similarity=0.717 Sum_probs=258.4
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHhhcCCCchhhhhHHHH-HHHHHHHHHHHhhhccCCCCCCcHHHHHHHHHHHHhhc
Q 023043 1 MKGLFKSKPRTPVDIVRQTRDLIIYANRSADVRESKREDKM-AELCKNIRELKSILYGNSESEPVSEACAQLTAEFFREN 79 (288)
Q Consensus 1 M~~lF~~~~k~P~elVr~l~e~l~~L~~~~~~~~~K~~~k~-eei~K~L~~mK~il~G~~e~~p~~e~~~qLa~ei~~~d 79 (288)
|+ ||++||||+|+||+++|+|.+|+.++ ++++.++|+ |||+|+|++||.||||++|++|+||+|+|||+|+|++|
T Consensus 3 m~--F~~~~ktP~elVr~l~d~l~~l~~~~--~~~~~~~k~~ee~sK~l~~mK~iL~G~~e~ep~~e~~~qL~~ei~~~d 78 (341)
T 1upk_A 3 FP--FGKSHKSPADIVKNLKESMAVLEKQD--ISDKKAEKATEEVSKNLVAMKEILYGTNEKEPQTEAVAQLAQELYNSG 78 (341)
T ss_dssp ---------CCHHHHHHHHHHHHHHHHC-----CTHHHHHHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHS
T ss_pred CC--CCCCCCCHHHHHHHHHHHHHHHhccc--cccchhhHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHhC
Confidence 66 99999999999999999999999643 234444455 89999999999999999999999999999999999999
Q ss_pred hHHHHHhhCCCCChhhhhhHHHHHHHHhhhcccCccchhhHhhcCHhHHHHHHHhccCchhhhhHHHHHHHHHHHHHHHH
Q 023043 80 TLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYENTDMALHYGAMLRECIRHQSVAR 159 (288)
Q Consensus 80 ll~~Li~~l~~L~fE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~peil~~L~~gY~~~dial~~G~mLRecik~e~la~ 159 (288)
+|++||.+||+||||+|||+++||++++|+++|+++|+|+||++||||+++|++||++||+|++||+|||||+|||.+|+
T Consensus 79 ll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~diAl~~G~mLRecir~e~la~ 158 (341)
T 1upk_A 79 LLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGIMLRECIRHEPLAK 158 (341)
T ss_dssp HHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHHHHHHHHHHHTSHHHHH
T ss_pred HHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccchhHhHHHHHHHHHHHhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcchhhHhhhhhccCCCchhhhhHHHHHHHHHhhChhHHHHHHHhhHHHHHHHHhHhhccCCCceehhchhhHHHHHh
Q 023043 160 YVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLLGDIL 239 (288)
Q Consensus 160 ~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefl~~nyd~Ff~~yn~~Ll~s~NYVTkRQSLKLLgelL 239 (288)
+||+|++||+||+|++.|+||||||||+||||+||+||++||+||++|||+||++|| +||+|+||||||||||||||||
T Consensus 159 ~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~-~Ll~S~NYVTkRQSlKLLgelL 237 (341)
T 1upk_A 159 IILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYE-KLLHSENYVTKRQSLKLLGELL 237 (341)
T ss_dssp HHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHH-HHTTCSSHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHH-HHhcCCcchhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999 8999999999999999999999
Q ss_pred ccCCchHHHHHhcCChhhHHHHHHHhhCCCCCcccccceeeeeecccC
Q 023043 240 LDRSNSVVMTRYVSSRENLRILMNLLRQEYPDRSISCFQAVCCESKQT 287 (288)
Q Consensus 240 ldr~N~~vM~rYi~~~~NLKl~M~LL~d~sknIQ~EAFhVf~~~~~~~ 287 (288)
|||+|++||+|||+|++|||+||+||+|+|||||+|||||||+|||-.
T Consensus 238 ldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP 285 (341)
T 1upk_A 238 LDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANP 285 (341)
T ss_dssp HSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCS
T ss_pred hCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCC
Confidence 999999999999999999999999999999999999999999999853
No 2
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=96.85 E-value=0.019 Score=48.09 Aligned_cols=197 Identities=12% Similarity=0.196 Sum_probs=144.8
Q ss_pred HHHHHhhchHHHHHhhCCCCChhhhhhHHHHHHHHhhhcccCccchhhHhhcCHhHHHHHHHhc--cCchhhhhHHHHHH
Q 023043 72 TAEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGY--ENTDMALHYGAMLR 149 (288)
Q Consensus 72 a~ei~~~dll~~Li~~l~~L~fE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~peil~~L~~gY--~~~dial~~G~mLR 149 (288)
...+.+.+.+..|+..|..=+-+.|..++.+..++.....+ ..+.+.. ..++..|+.-. +++++-..+-..|.
T Consensus 37 ~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~----~~~~~~~-~~~i~~l~~ll~~~~~~v~~~a~~~L~ 111 (252)
T 4hxt_A 37 IKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDE----AIKAIVD-AGGVEVLVKLLTSTDSEVQKEAARALA 111 (252)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH----HHHHHHH-TTHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChH----HHHHHHH-CCCHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 34556678899999999888888899999988888763221 2233332 23344443333 45777778888888
Q ss_pred HHH-HHHHHHHHHhcchhhHhhhhhccCCCchhhhhHHHHHHHHHhhChhHHHHHHHhhHHHHHHHHhHhhccCCCceeh
Q 023043 150 ECI-RHQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITR 228 (288)
Q Consensus 150 eci-k~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefl~~nyd~Ff~~yn~~Ll~s~NYVTk 228 (288)
.+. ..+.....+.....+..+.+.+..++-++...|..++..+-..++.....+...+ .....- .++.+++--++
T Consensus 112 ~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~---~i~~L~-~ll~~~~~~v~ 187 (252)
T 4hxt_A 112 NIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAG---GVEVLV-KLLTSTDSEVQ 187 (252)
T ss_dssp HHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTT---HHHHHH-HHTTCSCHHHH
T ss_pred HHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCc---CHHHHH-HHHCCCCHHHH
Confidence 877 5677778888888888999999999999999999999998776666555555543 444553 78999999999
Q ss_pred hchhhHHHHHhccCCchHHHHHhcCChhhHHHHHHHhhCCCCCcccccceee
Q 023043 229 RQAVKLLGDILLDRSNSVVMTRYVSSRENLRILMNLLRQEYPDRSISCFQAV 280 (288)
Q Consensus 229 RQSLKLLgelLldr~N~~vM~rYi~~~~NLKl~M~LL~d~sknIQ~EAFhVf 280 (288)
+.++..|+.+... +-. ..+.+.+..-+..++.+|++++..+|-+|..+.
T Consensus 188 ~~a~~~L~~l~~~--~~~-~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L 236 (252)
T 4hxt_A 188 KEAARALANIASG--PTS-AIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRAL 236 (252)
T ss_dssp HHHHHHHHHHTTS--BHH-HHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC--CHH-HHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHH
Confidence 9999999999862 222 234455567889999999999888888776543
No 3
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=96.76 E-value=0.0093 Score=50.68 Aligned_cols=196 Identities=14% Similarity=0.126 Sum_probs=139.9
Q ss_pred HHHHhhchHHHHHhhCCCCChhhhhhHHHHHHHHhhhcccCccchhhHhhcCHhHHHHHHHhc--cCchhhhhHHHHHHH
Q 023043 73 AEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGY--ENTDMALHYGAMLRE 150 (288)
Q Consensus 73 ~ei~~~dll~~Li~~l~~L~fE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~peil~~L~~gY--~~~dial~~G~mLRe 150 (288)
..+...+.+..|+..|..=+-+.|..++.+..++.....+. .+.+.. ..++..|+.-- +++++--.+-..|..
T Consensus 48 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~----~~~i~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~~ 122 (252)
T 4db8_A 48 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ----IQAVID-AGALPALVQLLSSPNEQILQEALWALSN 122 (252)
T ss_dssp HHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHH----HHHHHH-TTHHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred HHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHH----HHHHHH-cCCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 35667789999999998888888888888888887532221 223322 23444444333 356677777777777
Q ss_pred HHHHHHHH-HHHhcchhhHhhhhhccCCCchhhhhHHHHHHHHHhhChhHHHHHHHhhHHHHHHHHhHhhccCCCceehh
Q 023043 151 CIRHQSVA-RYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRR 229 (288)
Q Consensus 151 cik~e~la-~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefl~~nyd~Ff~~yn~~Ll~s~NYVTkR 229 (288)
....+... ..+.....+..+.+.++.++-++...|..++..+-...+.........+ .....- .++.+++--++.
T Consensus 123 l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~---~i~~L~-~ll~~~~~~v~~ 198 (252)
T 4db8_A 123 IASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAG---ALPALV-QLLSSPNEQILQ 198 (252)
T ss_dssp HTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTT---CHHHHH-HGGGCSSHHHHH
T ss_pred hhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCC---CHHHHH-HHHCCCCHHHHH
Confidence 77766665 7777788888888999999999999999999998876665555544433 344443 788999999999
Q ss_pred chhhHHHHHhccCCchHHHHHhcCChhhHHHHHHHhhCCCCCcccccceee
Q 023043 230 QAVKLLGDILLDRSNSVVMTRYVSSRENLRILMNLLRQEYPDRSISCFQAV 280 (288)
Q Consensus 230 QSLKLLgelLldr~N~~vM~rYi~~~~NLKl~M~LL~d~sknIQ~EAFhVf 280 (288)
.++..|+.+... +-.. ...+-+..-+..++.+|++++..+|-+|..+.
T Consensus 199 ~a~~~L~~l~~~--~~~~-~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L 246 (252)
T 4db8_A 199 EALWALSNIASG--GNEQ-KQAVKEAGALEKLEQLQSHENEKIQKEAQEAL 246 (252)
T ss_dssp HHHHHHHHHTTS--CHHH-HHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHH
T ss_pred HHHHHHHHHhcC--CHHH-HHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHH
Confidence 999999999832 2222 22333556788899999999999988876543
No 4
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=96.46 E-value=0.043 Score=45.88 Aligned_cols=190 Identities=12% Similarity=0.204 Sum_probs=138.9
Q ss_pred hHHHHHhhCCCCChhhhhhHHHHHHHHhhhcccCccchhhHhhcCHhHHHHHHHhc--cCchhhhhHHHHHHHHHHH-HH
Q 023043 80 TLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGY--ENTDMALHYGAMLRECIRH-QS 156 (288)
Q Consensus 80 ll~~Li~~l~~L~fE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~peil~~L~~gY--~~~dial~~G~mLRecik~-e~ 156 (288)
.+..|+..|..=+-+.|..+.....++...... ..+.+.. ..++..|+.-- +++++-..+-..|..+..+ +.
T Consensus 3 ~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~----~~~~~~~-~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 77 (252)
T 4hxt_A 3 DVEKLVKLLTSTDSETQKEAARDLAEIASGPAS----AIKAIVD-AGGVEVLVKLLTSTDSEVQKEAARALANIASGPDE 77 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHH----HHHHHHH-TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcH----HHHHHHH-CCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChH
Confidence 466778888877888888888888888764321 2233322 23444444333 3467777777788887777 78
Q ss_pred HHHHHhcchhhHhhhhhccCCCchhhhhHHHHHHHHHhhChhHHHHHHHhhHHHHHHHHhHhhccCCCceehhchhhHHH
Q 023043 157 VARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLLG 236 (288)
Q Consensus 157 la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefl~~nyd~Ff~~yn~~Ll~s~NYVTkRQSLKLLg 236 (288)
....+.....+..+.+.++.++=++...|..++..+-..++.........+ .....- +++.+++--+++.++..|+
T Consensus 78 ~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~---~i~~L~-~~l~~~~~~~~~~a~~~L~ 153 (252)
T 4hxt_A 78 AIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAG---GVEVLV-KLLTSTDSEVQKEAARALA 153 (252)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTT---HHHHHH-HHTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCC---CHHHHH-HHHcCCCHHHHHHHHHHHH
Confidence 888888888888899999999999999999999998877776666666643 445553 7899999999999999999
Q ss_pred HHhccCCchHHHHHhcCChhhHHHHHHHhhCCCCCcccccceeee
Q 023043 237 DILLDRSNSVVMTRYVSSRENLRILMNLLRQEYPDRSISCFQAVC 281 (288)
Q Consensus 237 elLldr~N~~vM~rYi~~~~NLKl~M~LL~d~sknIQ~EAFhVf~ 281 (288)
.+.....+. .+.+-+..-+..++.+|++++..+|.+|..+..
T Consensus 154 ~l~~~~~~~---~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~ 195 (252)
T 4hxt_A 154 NIASGPDEA---IKAIVDAGGVEVLVKLLTSTDSEVQKEAARALA 195 (252)
T ss_dssp HHTTSCHHH---HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHcCCHHH---HHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 998643322 223334678899999999998888887765543
No 5
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=95.90 E-value=0.23 Score=45.28 Aligned_cols=194 Identities=14% Similarity=0.147 Sum_probs=134.1
Q ss_pred HHhhchHHHHHhhCCC-CChhhhhhHHHHHHHHhhhc-ccCccchhhHhhcCHhHHHHHHHhc--cCchhhhhHHHHHHH
Q 023043 75 FFRENTLRLLITCLPK-LNLEARKDATQVVANLQRQQ-VHSKLIASDYLEANIDLLDILIAGY--ENTDMALHYGAMLRE 150 (288)
Q Consensus 75 i~~~dll~~Li~~l~~-L~fE~RKdv~~If~~llr~~-~~~r~p~v~Yl~~~peil~~L~~gY--~~~dial~~G~mLRe 150 (288)
+...+.+..|+..+.. -+-+.|+.++..+.++.+.. ...+ ...+ ..++..|+..- +++++-..+-..|+.
T Consensus 145 ~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~---~~~~---~~~l~~L~~~l~~~~~~v~~~a~~~L~~ 218 (450)
T 2jdq_A 145 VLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPE---FAKV---SPCLNVLSWLLFVSDTDVLADACWALSY 218 (450)
T ss_dssp HHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCC---GGGT---GGGHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCC---HHHH---HHHHHHHHHHHccCCHHHHHHHHHHHHH
Confidence 3445788999999985 78899999999999998744 2111 1222 33444444433 345555566666776
Q ss_pred HHHH-HHHHHHHhcchhhHhhhhhccCCCchhhhhHHHHHHHHHhhChhHHHHHHHhhHHHHHHHHhHhhccCCCceehh
Q 023043 151 CIRH-QSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRR 229 (288)
Q Consensus 151 cik~-e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefl~~nyd~Ff~~yn~~Ll~s~NYVTkR 229 (288)
+..+ +.....+...+.+..+.+.+..++-++...|..++..+...........+..+ .....- .++.+++--+|+
T Consensus 219 l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~---~l~~L~-~ll~~~~~~vr~ 294 (450)
T 2jdq_A 219 LSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCS---ALQSLL-HLLSSPKESIKK 294 (450)
T ss_dssp HTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTT---HHHHHH-HHTTCSSHHHHH
T ss_pred HHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCc---cHHHHH-HHHcCCCHHHHH
Confidence 6654 34455566667788888888889999999999999998877665544444433 445553 789999999999
Q ss_pred chhhHHHHHhccCCchHHHHHhcCChhhHHHHHHHhhCCCCCcccccceeee
Q 023043 230 QAVKLLGDILLDRSNSVVMTRYVSSRENLRILMNLLRQEYPDRSISCFQAVC 281 (288)
Q Consensus 230 QSLKLLgelLldr~N~~vM~rYi~~~~NLKl~M~LL~d~sknIQ~EAFhVf~ 281 (288)
.++..||.+.. .+-..+...+ +..-+..++.+|+|+...+|-+|..+..
T Consensus 295 ~a~~~L~~l~~--~~~~~~~~~~-~~~~l~~L~~~l~~~~~~v~~~a~~~L~ 343 (450)
T 2jdq_A 295 EACWTISNITA--GNRAQIQTVI-DANIFPALISILQTAEFRTRKEAAWAIT 343 (450)
T ss_dssp HHHHHHHHHTT--SCHHHHHHHH-HTTHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHc--CCHHHHHHHH-HCCCHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 99999999984 2333333333 2466888899999998888888765543
No 6
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=95.35 E-value=0.42 Score=45.50 Aligned_cols=194 Identities=12% Similarity=0.099 Sum_probs=135.3
Q ss_pred HhhchHHHHHhhCCCCChhhhhhHHHHHHHHhhhcccCccchhhHhhcCHhHHHHHHHhc--cCchhhhhHHHHHHHHHH
Q 023043 76 FRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGY--ENTDMALHYGAMLRECIR 153 (288)
Q Consensus 76 ~~~dll~~Li~~l~~L~fE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~peil~~L~~gY--~~~dial~~G~mLRecik 153 (288)
...+.+..|+..+..-+-+.|+.++....++.+..... +..... ..++..|+.-- +++++-..+-..|..+..
T Consensus 212 ~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~--~~~~~~---~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~ 286 (530)
T 1wa5_B 212 LQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQ--PDWSVV---SQALPTLAKLIYSMDTETLVDACWAISYLSD 286 (530)
T ss_dssp HHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSC--CCHHHH---GGGHHHHHHHTTCCCHHHHHHHHHHHHHHHS
T ss_pred HHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCC--CcHHHH---HhHHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 44578888999888888889999999999988744111 111122 23333333322 345666666666776665
Q ss_pred H-HHHHHHHhcchhhHhhhhhccCCCchhhhhHHHHHHHHHhhChhHHHHHHHhhHHHHHHHHhHhhccCCCceehhchh
Q 023043 154 H-QSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAV 232 (288)
Q Consensus 154 ~-e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefl~~nyd~Ff~~yn~~Ll~s~NYVTkRQSL 232 (288)
. +.....++....+..+.+.+..++-++...|..++..+.+........++..+ +....- .+|.+++.-++..++
T Consensus 287 ~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~---~l~~L~-~lL~~~~~~vr~~A~ 362 (530)
T 1wa5_B 287 GPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAG---VLPALR-LLLSSPKENIKKEAC 362 (530)
T ss_dssp SCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTT---HHHHHH-HHTTCSCHHHHHHHH
T ss_pred CCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcc---hHHHHH-HHHcCCCHHHHHHHH
Confidence 3 44556667777788888888888889999999999998877776666666544 444553 789999999999999
Q ss_pred hHHHHHhccCCchHHHHHhcCChhhHHHHHHHhhCCCCCcccccceeee
Q 023043 233 KLLGDILLDRSNSVVMTRYVSSRENLRILMNLLRQEYPDRSISCFQAVC 281 (288)
Q Consensus 233 KLLgelLldr~N~~vM~rYi~~~~NLKl~M~LL~d~sknIQ~EAFhVf~ 281 (288)
..||.|.. .+......++ +..-+..++.+|.+++..+|.+|..+..
T Consensus 363 ~aL~~l~~--~~~~~~~~~~-~~~~l~~L~~lL~~~~~~v~~~a~~aL~ 408 (530)
T 1wa5_B 363 WTISNITA--GNTEQIQAVI-DANLIPPLVKLLEVAEYKTKKEACWAIS 408 (530)
T ss_dssp HHHHHHTT--SCHHHHHHHH-HTTCHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHc--CCHHHHHHHH-HCCCHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 99999874 3334433333 4567888999999988888887765543
No 7
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=95.34 E-value=0.076 Score=43.73 Aligned_cols=184 Identities=13% Similarity=0.111 Sum_probs=126.1
Q ss_pred HHHHhhCCCCChhhhhhHHHHHHHHhhhcccCccchhhHhhcCHhHHHHHHHhc--cCchhhhhHHHHHHHHHH-HHHHH
Q 023043 82 RLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGY--ENTDMALHYGAMLRECIR-HQSVA 158 (288)
Q Consensus 82 ~~Li~~l~~L~fE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~peil~~L~~gY--~~~dial~~G~mLRecik-~e~la 158 (288)
..|+.-|..=+-+.|..++....++.+...+ ..+.+.. ..++..|+..- +++++-..+-..|..+.. .+...
T Consensus 15 ~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~----~~~~i~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 89 (210)
T 4db6_A 15 PQMVQQLNSPDQQELQSALRKLSQIASGGNE----QIQAVID-AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 89 (210)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHTSCHH----HHHHHHH-TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHcCCHH----HHHHHHH-cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHH
Confidence 4444555555677777777777777643221 1222222 13333333322 256666667777777664 55666
Q ss_pred HHHhcchhhHhhhhhccCCCchhhhhHHHHHHHHHhhChhHHHHHHHhhHHHHHHHHhHhhccCCCceehhchhhHHHHH
Q 023043 159 RYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLLGDI 238 (288)
Q Consensus 159 ~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefl~~nyd~Ff~~yn~~Ll~s~NYVTkRQSLKLLgel 238 (288)
..+.....+..+.+.++.++-++...|..++..+-...+......+..+ .+...- .++.+++.-+++.++..|+.+
T Consensus 90 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~---~i~~L~-~ll~~~~~~v~~~a~~aL~~l 165 (210)
T 4db6_A 90 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAG---ALPALV-QLLSSPNEQILQEALWALSNI 165 (210)
T ss_dssp HHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTT---HHHHHH-HHTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcC---cHHHHH-HHHcCCCHHHHHHHHHHHHHH
Confidence 7777777888899999999999999999999998876666655555543 445553 789999999999999999999
Q ss_pred hcc-CCchHHHHHhcCChhhHHHHHHHhhCCCCCcccccce
Q 023043 239 LLD-RSNSVVMTRYVSSRENLRILMNLLRQEYPDRSISCFQ 278 (288)
Q Consensus 239 Lld-r~N~~vM~rYi~~~~NLKl~M~LL~d~sknIQ~EAFh 278 (288)
... +.+. ..+.+..-+..+..+|.+++..+|-+|.-
T Consensus 166 ~~~~~~~~----~~~~~~g~i~~L~~ll~~~~~~v~~~a~~ 202 (210)
T 4db6_A 166 ASGGNEQK----QAVKEAGALEKLEQLQSHENEKIQKEAQE 202 (210)
T ss_dssp HTSCHHHH----HHHHHTTHHHHHHHGGGCSCHHHHHHHHH
T ss_pred HcCCcHHH----HHHHHCCCHHHHHHHHhCCCHHHHHHHHH
Confidence 975 3322 34444567888999999998888877653
No 8
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=94.71 E-value=0.53 Score=38.56 Aligned_cols=159 Identities=12% Similarity=0.114 Sum_probs=113.8
Q ss_pred HHHHHhhchHHHHHhhCCCCChhhhhhHHHHHHHHhhhcccCccchhhHhhcCHhHHHHHHHhcc--CchhhhhHHHHHH
Q 023043 72 TAEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYE--NTDMALHYGAMLR 149 (288)
Q Consensus 72 a~ei~~~dll~~Li~~l~~L~fE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~peil~~L~~gY~--~~dial~~G~mLR 149 (288)
...+...+.+..|+..|..=+-+.|..+.....++.....+. .+.+.. ...+..|+.--+ ++++--.+-..|.
T Consensus 47 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~----~~~i~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~ 121 (210)
T 4db6_A 47 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ----IQAVID-AGALPALVQLLSSPNEQILQEALWALS 121 (210)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH----HHHHHH-TTCHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHH----HHHHHH-CCCHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 355677789999999998888889999999888887532211 222222 223333333332 4556666666677
Q ss_pred HHHH-HHHHHHHHhcchhhHhhhhhccCCCchhhhhHHHHHHHHHhhChhHHHHHHHhhHHHHHHHHhHhhccCCCceeh
Q 023043 150 ECIR-HQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITR 228 (288)
Q Consensus 150 ecik-~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefl~~nyd~Ff~~yn~~Ll~s~NYVTk 228 (288)
.... .+...+.++....+..+.+.++.++-++...|...+..+...++.....+...+ .....- .++.+++.-++
T Consensus 122 ~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g---~i~~L~-~ll~~~~~~v~ 197 (210)
T 4db6_A 122 NIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAG---ALEKLE-QLQSHENEKIQ 197 (210)
T ss_dssp HHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTT---HHHHHH-HGGGCSCHHHH
T ss_pred HHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCC---CHHHHH-HHHhCCCHHHH
Confidence 6654 455566777888888999999999999999999999999887676666665554 445553 78999999999
Q ss_pred hchhhHHHHHh
Q 023043 229 RQAVKLLGDIL 239 (288)
Q Consensus 229 RQSLKLLgelL 239 (288)
++++..|+.|-
T Consensus 198 ~~a~~aL~~l~ 208 (210)
T 4db6_A 198 KEAQEALEKLQ 208 (210)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHh
Confidence 99999998763
No 9
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=94.19 E-value=0.63 Score=39.13 Aligned_cols=180 Identities=13% Similarity=0.118 Sum_probs=119.0
Q ss_pred CCChhhhhhHHHHHHHHhhhcccCccchhhHhhcCHhHHHHHHHhcc--CchhhhhHHHHHHHHHH-HHHHHHHHhcchh
Q 023043 90 KLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYE--NTDMALHYGAMLRECIR-HQSVARYVLESQH 166 (288)
Q Consensus 90 ~L~fE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~peil~~L~~gY~--~~dial~~G~mLRecik-~e~la~~iL~~~~ 166 (288)
.=+-+.|..++....+++.... +..+.+.. ..++..|+.--. ++++-..+-..|..+.. .+.....+.....
T Consensus 23 s~~~~~~~~a~~~L~~~l~~~~----~~~~~~~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~ 97 (252)
T 4db8_A 23 SDDMQEQLSATRKFSQILSDGN----EQIQAVID-AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGA 97 (252)
T ss_dssp SSCSSHHHHHHHHHHHHHHHHH----HHHHHHHH-TTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTH
T ss_pred CCCHHHHHHHHHHHHHHHcCCC----chHHHHHH-cCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCC
Confidence 3345566666666655554311 12222222 234444444332 35666677777777776 5666777777778
Q ss_pred hHhhhhhccCCCchhhhhHHHHHHHHHhhChhHHHHHHHhhHHHHHHHHhHhhccCCCceehhchhhHHHHHhccCCchH
Q 023043 167 MKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLLGDILLDRSNSV 246 (288)
Q Consensus 167 f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefl~~nyd~Ff~~yn~~Ll~s~NYVTkRQSLKLLgelLldr~N~~ 246 (288)
+-.+.+.++.++-++...|..++..+-..+..-...+...+ .....- .++.+++.-+++.++..|+.+......
T Consensus 98 i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~---~i~~L~-~lL~~~~~~v~~~a~~~L~~l~~~~~~-- 171 (252)
T 4db8_A 98 LPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAG---ALPALV-QLLSSPNEQILQEALWALSNIASGGNE-- 171 (252)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTT---HHHHHH-HGGGCSCHHHHHHHHHHHHHHTTSCHH--
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCC---CHHHHH-HHHhCCCHHHHHHHHHHHHHHHcCChH--
Confidence 88888999999999999999999988665554435555543 334443 789999999999999999999964321
Q ss_pred HHHHhcCChhhHHHHHHHhhCCCCCcccccceeee
Q 023043 247 VMTRYVSSRENLRILMNLLRQEYPDRSISCFQAVC 281 (288)
Q Consensus 247 vM~rYi~~~~NLKl~M~LL~d~sknIQ~EAFhVf~ 281 (288)
....+.+..-+..++.+|++++..++..|..+..
T Consensus 172 -~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~ 205 (252)
T 4db8_A 172 -QIQAVIDAGALPALVQLLSSPNEQILQEALWALS 205 (252)
T ss_dssp -HHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHH
T ss_pred -HHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 1223334567888899999988888877765443
No 10
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=93.34 E-value=4.5 Score=36.70 Aligned_cols=208 Identities=13% Similarity=0.102 Sum_probs=132.6
Q ss_pred HHHHHHHHHHHHhhcCCC-chhhhh-HHHHHHHHHHHHHHHhhhccCCCCCCcHHHHHHHHHHHHhhchHHHHHh-hCCC
Q 023043 14 DIVRQTRDLIIYANRSAD-VRESKR-EDKMAELCKNIRELKSILYGNSESEPVSEACAQLTAEFFRENTLRLLIT-CLPK 90 (288)
Q Consensus 14 elVr~l~e~l~~L~~~~~-~~~~K~-~~k~eei~K~L~~mK~il~G~~e~~p~~e~~~qLa~ei~~~dll~~Li~-~l~~ 90 (288)
+-++.+++++..|.++.. .+.... ..-.++-...+..+..++.+. .-++.+...+-++.|+. .|..
T Consensus 25 d~~~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~~-----------dna~~~~~~G~l~~Lv~~lL~s 93 (296)
T 1xqr_A 25 GEVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENM-----------DNAADFCQLSGMHLLVGRYLEA 93 (296)
T ss_dssp HHHHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTSH-----------HHHHHHHHTTHHHHHHHTTTTC
T ss_pred CHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhCh-----------hhHHHHHHcCCHHHHHHHHHcC
Confidence 447778888888886421 111110 000133444455555555421 24556777888889999 8988
Q ss_pred CChhhhhhHHHHHHHHhhhcccCccchhhHhhc---CHhHHHHHHHhccCchhhhhHHHHHHHHHHH-HHHHHHHhcchh
Q 023043 91 LNLEARKDATQVVANLQRQQVHSKLIASDYLEA---NIDLLDILIAGYENTDMALHYGAMLRECIRH-QSVARYVLESQH 166 (288)
Q Consensus 91 L~fE~RKdv~~If~~llr~~~~~r~p~v~Yl~~---~peil~~L~~gY~~~dial~~G~mLRecik~-e~la~~iL~~~~ 166 (288)
=+-+.|..++.+.+++...... .-+++.. -|-++..|-.+. ++++.-.+-.-|--++++ +.....+...+.
T Consensus 94 ~~~~vr~~Aa~~Lg~ia~~n~~----~~~~vv~~g~l~~Ll~LL~~~~-~~~v~~~A~~ALsnl~~~~~~~~~~~~~~gg 168 (296)
T 1xqr_A 94 GAAGLRWRAAQLIGTCSQNVAA----IQEQVLGLGALRKLLRLLDRDA-CDTVRVKALFAISCLVREQEAGLLQFLRLDG 168 (296)
T ss_dssp SSHHHHHHHHHHHHHHHTTCHH----HHHHHHHTTHHHHHHHHHHHCS-CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTH
T ss_pred CCHHHHHHHHHHHHHHHhCCHH----HHHHHHHCCCHHHHHHHHccCC-CHHHHHHHHHHHHHHHcCCcHHHHHHHHCCC
Confidence 8889999999999998753211 1223333 244444333222 233433333344444443 344445555566
Q ss_pred hHhhhhhccCCCchhhhhHHHHHHHHHhhChhHHHHHHHhhHHHHHHHHhHhhccCCCceehhchhhHHHHHhcc
Q 023043 167 MKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLLGDILLD 241 (288)
Q Consensus 167 f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefl~~nyd~Ff~~yn~~Ll~s~NYVTkRQSLKLLgelLld 241 (288)
+-.+...++.+++++-.+|...+..+...++.....+...+ ++... -.||.+++--++.+++..|+.|+.+
T Consensus 169 i~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g---~i~~L-v~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 169 FSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMG---MVQQL-VALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTT---HHHHH-HHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcC---CHHHH-HHHHcCCChhHHHHHHHHHHHHHhC
Confidence 66777778889999999999999999888777777777666 34455 3799999999999999999999976
No 11
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=92.66 E-value=0.48 Score=44.88 Aligned_cols=194 Identities=14% Similarity=0.167 Sum_probs=124.4
Q ss_pred HhhchHHHHHhhCCCCChhhhhhHHHHHHHHhhhcccCccchhhHhhcCHhHHHHHHHhc---cCchhhhhHHHHHHHHH
Q 023043 76 FRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGY---ENTDMALHYGAMLRECI 152 (288)
Q Consensus 76 ~~~dll~~Li~~l~~L~fE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~peil~~L~~gY---~~~dial~~G~mLReci 152 (288)
...+.+..|+..|..=+-+.|..++....++..... +..+.+... .++..|+..- .++++.-.+-..|..+.
T Consensus 157 ~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~----~~~~~i~~~-g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~ 231 (528)
T 4b8j_A 157 IDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSP----KCRDLVLAN-GALLPLLAQLNEHTKLSMLRNATWTLSNFC 231 (528)
T ss_dssp HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCH----HHHHHHHHT-TCHHHHHHTCCTTCCHHHHHHHHHHHHHHH
T ss_pred HhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCh----hhHHHHHHC-CcHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 344678888888888777888888888888764321 112233221 3344444333 34555555555555555
Q ss_pred HHHHHHHHHhcchhhHhhhhhccCCCchhhhhHHHHHHHHHhhChhHHHHHHHhhHHHHHHHHhHhhccCCCceehhchh
Q 023043 153 RHQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAV 232 (288)
Q Consensus 153 k~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefl~~nyd~Ff~~yn~~Ll~s~NYVTkRQSL 232 (288)
++.+-.......+.+..+...+..++=++..+|..++..+-......+...+... .....- .+|.+++--++..++
T Consensus 232 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g---~v~~Lv-~lL~~~~~~v~~~a~ 307 (528)
T 4b8j_A 232 RGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAG---VCPRLV-ELLLHPSPSVLIPAL 307 (528)
T ss_dssp CSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTT---CHHHHH-HHTTCSCHHHHHHHH
T ss_pred cCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcC---HHHHHH-HHHcCCChhHHHHHH
Confidence 5432222223345666677777788888999999999887765554444444432 334443 788899888999999
Q ss_pred hHHHHHhccCCchHHHHHhcCChhhHHHHHHHhhCC-CCCcccccceeee
Q 023043 233 KLLGDILLDRSNSVVMTRYVSSRENLRILMNLLRQE-YPDRSISCFQAVC 281 (288)
Q Consensus 233 KLLgelLldr~N~~vM~rYi~~~~NLKl~M~LL~d~-sknIQ~EAFhVf~ 281 (288)
..||.|... +-. ....+-+..-+..++.+|+++ +..++-+|..+..
T Consensus 308 ~~L~nl~~~--~~~-~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~ 354 (528)
T 4b8j_A 308 RTVGNIVTG--DDA-QTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTIS 354 (528)
T ss_dssp HHHHHHTTS--CHH-HHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHcC--CHH-HHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 999999852 222 333344567789999999999 8888888865543
No 12
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=92.37 E-value=0.6 Score=44.40 Aligned_cols=193 Identities=16% Similarity=0.160 Sum_probs=127.7
Q ss_pred hchHHHHHhhCCCCChhhhhhHHHHHHHHhhhcccCccchhhHhhcCHhHHHHHHHhc--cCchhhhhHHHHHHHHHH-H
Q 023043 78 ENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGY--ENTDMALHYGAMLRECIR-H 154 (288)
Q Consensus 78 ~dll~~Li~~l~~L~fE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~peil~~L~~gY--~~~dial~~G~mLRecik-~ 154 (288)
.+++..|+..|..=+-+.|.++..+..++..... ...+.+.. ..++..|+..- .++++-..+-..|..+.. .
T Consensus 256 ~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~----~~~~~~~~-~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~ 330 (530)
T 1wa5_B 256 SQALPTLAKLIYSMDTETLVDACWAISYLSDGPQ----EAIQAVID-VRIPKRLVELLSHESTLVQTPALRAVGNIVTGN 330 (530)
T ss_dssp GGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCH----HHHHHHHH-TTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCH----HHHHHHHh-cCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCC
Confidence 3578888888887778888888888888765321 12333322 12333333332 345555556566666554 3
Q ss_pred HHHHHHHhcchhhHhhhhhccCCCchhhhhHHHHHHHHHhhChhHHHHHHHhhHHHHHHHHhHhhccCCCceehhchhhH
Q 023043 155 QSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKL 234 (288)
Q Consensus 155 e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefl~~nyd~Ff~~yn~~Ll~s~NYVTkRQSLKL 234 (288)
+...+.++....+..+.++++.++.+|...|..++..+-...+..+..++..+ ++...- .+|.++++-+++.++..
T Consensus 331 ~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~---~l~~L~-~lL~~~~~~v~~~a~~a 406 (530)
T 1wa5_B 331 DLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDAN---LIPPLV-KLLEVAEYKTKKEACWA 406 (530)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTT---CHHHHH-HHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCC---CHHHHH-HHHhcCCHHHHHHHHHH
Confidence 55666777777788888899999999999999999997765555555555443 344442 67888999999999999
Q ss_pred HHHHhccCCchHHHHHhcCChhhHHHHHHHhhCCCCCccccccee
Q 023043 235 LGDILLDRSNSVVMTRYVSSRENLRILMNLLRQEYPDRSISCFQA 279 (288)
Q Consensus 235 LgelLldr~N~~vM~rYi~~~~NLKl~M~LL~d~sknIQ~EAFhV 279 (288)
|+.+...-....-..+|+-+..-+..+..+|.++...++..|...
T Consensus 407 L~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~a 451 (530)
T 1wa5_B 407 ISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDA 451 (530)
T ss_dssp HHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHH
Confidence 999987522100122344455678888889988877777655443
No 13
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=92.30 E-value=0.47 Score=45.69 Aligned_cols=196 Identities=14% Similarity=0.151 Sum_probs=115.1
Q ss_pred HHHHhhchHHHHHhhCCCCChhhhhhHHHHHHHHhhhcccCccchhhHhhcCHhHHHHHHHhccCchhhh-------hHH
Q 023043 73 AEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYENTDMAL-------HYG 145 (288)
Q Consensus 73 ~ei~~~dll~~Li~~l~~L~fE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~peil~~L~~gY~~~dial-------~~G 145 (288)
+.+...+.++.|+..|..=+-+.|..++....++....... -+.+..+ .++..|+.--..++... ++.
T Consensus 156 ~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~----r~~i~~~-g~i~~Ll~lL~~~~~~~~~~~~~~~a~ 230 (529)
T 3tpo_A 156 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAF----RDLVIKH-GAIDPLLALLAVPDLSTLACGYLRNLT 230 (529)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHH----HHHHHHT-TCHHHHHHTTCSSCGGGSCHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHH----HHHHHHc-CCcHHHHHHHhccchhHhHHHHHHHHH
Confidence 45566678888999888888888888888877776432211 1222221 12222222222222111 122
Q ss_pred HHHHHHHHHH-HHHHHHhcchhhHhhhhhccCCCchhhhhHHHHHHHHHhhChhHHHHHHHhhHHHHHHHHhHhhccCCC
Q 023043 146 AMLRECIRHQ-SVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSN 224 (288)
Q Consensus 146 ~mLRecik~e-~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefl~~nyd~Ff~~yn~~Ll~s~N 224 (288)
..|..+.++. .........+.+-.+...++.++-++-.||...+..+...+........... .....- .||.+++
T Consensus 231 ~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g---~i~~Lv-~lL~~~~ 306 (529)
T 3tpo_A 231 WTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKG---VVPQLV-KLLGATE 306 (529)
T ss_dssp HHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTT---CHHHHH-HHHTCSC
T ss_pred HHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhcc---chHHHH-HHhcCCC
Confidence 2222222211 0001111112233444566777888889999888887765544433333332 233442 7899999
Q ss_pred ceehhchhhHHHHHhccCCchHHHHHhcCChhhHHHHHHHhhCCCCCcccccceee
Q 023043 225 YITRRQAVKLLGDILLDRSNSVVMTRYVSSRENLRILMNLLRQEYPDRSISCFQAV 280 (288)
Q Consensus 225 YVTkRQSLKLLgelLldr~N~~vM~rYi~~~~NLKl~M~LL~d~sknIQ~EAFhVf 280 (288)
.-+++.++..||.|... ..-.+..+-+..-+..+..||++++..||-||..+.
T Consensus 307 ~~v~~~a~~aL~nl~~~---~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL 359 (529)
T 3tpo_A 307 LPIVTPALRAIGNIVTG---TDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTM 359 (529)
T ss_dssp HHHHHHHHHHHHHHTTS---CHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcc---chHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHH
Confidence 99999999999999843 233445555667788899999999999998886554
No 14
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=92.12 E-value=0.88 Score=41.33 Aligned_cols=194 Identities=14% Similarity=0.188 Sum_probs=119.7
Q ss_pred HHhhchHHHHHhhCCCCChhhhhhHHHHHHHHhhhcccCccchhhHhhcCHhHHHHHHHhcc---CchhhhhHHHHHHHH
Q 023043 75 FFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYE---NTDMALHYGAMLREC 151 (288)
Q Consensus 75 i~~~dll~~Li~~l~~L~fE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~peil~~L~~gY~---~~dial~~G~mLRec 151 (288)
+...+.+..|+..|..=+-+.|..+.....++...... ..+.+.. ..++..|+.--. ++++...+-..|...
T Consensus 103 ~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~----~~~~~~~-~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l 177 (450)
T 2jdq_A 103 VIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTM----CRDYVLD-CNILPPLLQLFSKQNRLTMTRNAVWALSNL 177 (450)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHH----HHHHHHH-TTCHHHHHHHTTSCCCHHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHH----HHHHHHH-CCCHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 34567899999999887888899888888888753211 1222221 233333333322 344544454555544
Q ss_pred HHHH-HHHHHHhcchhhHhhhhhccCCCchhhhhHHHHHHHHHhhChhHHHHHHHhhHHHHHHHHhHhhccCCCceehhc
Q 023043 152 IRHQ-SVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQ 230 (288)
Q Consensus 152 ik~e-~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefl~~nyd~Ff~~yn~~Ll~s~NYVTkRQ 230 (288)
.++. +-.+..+..+.+-.+.+.+..++=++..+|..++..+-.............. .+...- .++.+++--++..
T Consensus 178 ~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~---~i~~L~-~ll~~~~~~v~~~ 253 (450)
T 2jdq_A 178 CRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAG---VCRRLV-ELLMHNDYKVVSP 253 (450)
T ss_dssp HCCSSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTT---THHHHH-HHTTCSCHHHHHH
T ss_pred hCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcC---cHHHHH-HHHCCCchhHHHH
Confidence 4332 1001111134455566666667777888888888887655444443333332 344443 6888899889999
Q ss_pred hhhHHHHHhccCCchHHHHHhcCChhhHHHHHHHhhCCCCCcccccceee
Q 023043 231 AVKLLGDILLDRSNSVVMTRYVSSRENLRILMNLLRQEYPDRSISCFQAV 280 (288)
Q Consensus 231 SLKLLgelLldr~N~~vM~rYi~~~~NLKl~M~LL~d~sknIQ~EAFhVf 280 (288)
++..||.+.....+ ..+.+-+..-+..++.+|.+++..++.+|..+.
T Consensus 254 a~~~L~~l~~~~~~---~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L 300 (450)
T 2jdq_A 254 ALRAVGNIVTGDDI---QTQVILNCSALQSLLHLLSSPKESIKKEACWTI 300 (450)
T ss_dssp HHHHHHHHTTSCHH---HHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred HHHHHHHHhhCChH---HHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHH
Confidence 99999999864332 233444556888999999999888888876544
No 15
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=91.96 E-value=5.6 Score=40.10 Aligned_cols=181 Identities=13% Similarity=0.135 Sum_probs=114.3
Q ss_pred HHHHhhCCCCChhhhhhHHHHHHHHhhhcccCccchhhHhhcCHhHHHHHHHhccCchhhhhHHHH--HHHHHHH-H-HH
Q 023043 82 RLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYENTDMALHYGAM--LRECIRH-Q-SV 157 (288)
Q Consensus 82 ~~Li~~l~~L~fE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~peil~~L~~gY~~~dial~~G~m--LRecik~-e-~l 157 (288)
..++..|..=+-..|+.++.+.+.+.+.. +...-|+++..|+..-.+++...--|.+ |...++. . .+
T Consensus 93 ~~ll~~l~~~~~~vr~~~a~~i~~ia~~~---------~~~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~ 163 (852)
T 4fdd_A 93 SECLNNIGDSSPLIRATVGILITTIASKG---------ELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEIL 163 (852)
T ss_dssp HHHHTTTTCSSHHHHHHHHHHHHHHHHHT---------TTTTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHhc---------CccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHh
Confidence 44555555555566777777777777643 1234588999998888776544333332 1211111 1 01
Q ss_pred HHHHh---cchhhHhhhhhccCCCchhhhhHHHHHHHHHhhChhHHHHHHHhhHHHHHHHHhHhhccCCCceehhchhhH
Q 023043 158 ARYVL---ESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKL 234 (288)
Q Consensus 158 a~~iL---~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefl~~nyd~Ff~~yn~~Ll~s~NYVTkRQSLKL 234 (288)
.+.-+ -...+-.+++.++.++-+|-.-|...+..++..+.. -+..+.+.+....- +++.+++--+|+++++.
T Consensus 164 ~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~----~~~~~~~~~l~~l~-~~~~d~~~~vr~~a~~~ 238 (852)
T 4fdd_A 164 DSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQ----ALMLHIDSFIENLF-ALAGDEEPEVRKNVCRA 238 (852)
T ss_dssp HHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCH----HHHTSHHHHHHHHH-HHHTCCCHHHHHHHHHH
T ss_pred chhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccH----HHHHHHHHHHHHHH-HHcCCCCHHHHHHHHHH
Confidence 10000 011344566667778888888888888766654332 23445666777664 78889999999999999
Q ss_pred HHHHhccCCchHHHHHhcCChhhHHHHHHHhhCCCCCcccccceee
Q 023043 235 LGDILLDRSNSVVMTRYVSSRENLRILMNLLRQEYPDRSISCFQAV 280 (288)
Q Consensus 235 LgelLldr~N~~vM~rYi~~~~NLKl~M~LL~d~sknIQ~EAFhVf 280 (288)
|+++.- .....+..|+. .=+..++.+++|+...++.+|...+
T Consensus 239 L~~l~~--~~~~~~~~~l~--~l~~~l~~~~~~~~~~vr~~a~e~l 280 (852)
T 4fdd_A 239 LVMLLE--VRMDRLLPHMH--NIVEYMLQRTQDQDENVALEACEFW 280 (852)
T ss_dssp HHHHHH--HCHHHHGGGHH--HHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred HHHHHH--hCHHHHHHHHH--HHHHHHHHHccCCcHHHHHHHHHHH
Confidence 999984 34566666764 3567788888998888888886543
No 16
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=91.61 E-value=1.5 Score=41.51 Aligned_cols=192 Identities=15% Similarity=0.119 Sum_probs=131.4
Q ss_pred HhhchHHHHHhhC-CCCChhhhhhHHHHHHHHhhhcccCccchhhHhhcCHhHHHHHHHhc--cCchhhhhHHHHHHHHH
Q 023043 76 FRENTLRLLITCL-PKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGY--ENTDMALHYGAMLRECI 152 (288)
Q Consensus 76 ~~~dll~~Li~~l-~~L~fE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~peil~~L~~gY--~~~dial~~G~mLReci 152 (288)
...+.+..|+..| ..-+.+.++.++....++.+.... +..... +.++..|+.-- +++++...+-..|..+.
T Consensus 199 ~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~---~~~~~~---~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~ 272 (528)
T 4b8j_A 199 LANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQ---PSFEQT---RPALPALARLIHSNDEEVLTDACWALSYLS 272 (528)
T ss_dssp HHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSC---CCHHHH---TTHHHHHHHHTTCCCHHHHHHHHHHHHHHT
T ss_pred HHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCC---CcHHHH---HHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 3456788899888 667888999999999999875422 112222 34444444333 34555555555666555
Q ss_pred HH-HHHHHHHhcchhhHhhhhhccCCCchhhhhHHHHHHHHHhhChhHHHHHHHhhHHHHHHHHhHhhccCC-Cceehhc
Q 023043 153 RH-QSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESS-NYITRRQ 230 (288)
Q Consensus 153 k~-e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefl~~nyd~Ff~~yn~~Ll~s~-NYVTkRQ 230 (288)
.+ +.....++....+..+...+..++-+|...|..++..+.+.........+..+ ....+- .+|.++ +--+++.
T Consensus 273 ~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~---~l~~L~-~lL~~~~~~~v~~~ 348 (528)
T 4b8j_A 273 DGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQ---ALPCLL-SLLTQNLKKSIKKE 348 (528)
T ss_dssp SSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTT---HHHHHH-HHHHSCCCHHHHHH
T ss_pred cCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhh---hHHHHH-HHHcCCCcHHHHHH
Confidence 43 33445666777788888888888889999999999998887666665555543 344453 788888 8999999
Q ss_pred hhhHHHHHhccCCchHHHHHhcCChhhHHHHHHHhhCCCCCcccccceee
Q 023043 231 AVKLLGDILLDRSNSVVMTRYVSSRENLRILMNLLRQEYPDRSISCFQAV 280 (288)
Q Consensus 231 SLKLLgelLldr~N~~vM~rYi~~~~NLKl~M~LL~d~sknIQ~EAFhVf 280 (288)
+...|+.|... +..... ++-+..-+..++.+|.+....+|-+|.-+.
T Consensus 349 A~~~L~nl~~~--~~~~~~-~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL 395 (528)
T 4b8j_A 349 ACWTISNITAG--NKDQIQ-AVINAGIIGPLVNLLQTAEFDIKKEAAWAI 395 (528)
T ss_dssp HHHHHHHHHTS--CHHHHH-HHHHTTCHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHCC--CHHHHH-HHHHCCCHHHHHHHHhcCCHHHHHHHHHHH
Confidence 99999999853 333332 333346688889999988878887775544
No 17
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=89.26 E-value=18 Score=36.71 Aligned_cols=181 Identities=12% Similarity=0.115 Sum_probs=124.5
Q ss_pred hchHHHHHhhCCCCChhhhhhHHHHHHHHhhhcccCccchhhHhhcCHhHHHHHHHhc---cCchhhhhHHHHHHHHHHH
Q 023043 78 ENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGY---ENTDMALHYGAMLRECIRH 154 (288)
Q Consensus 78 ~dll~~Li~~l~~L~fE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~peil~~L~~gY---~~~dial~~G~mLRecik~ 154 (288)
.+.+..|+..|..=+-+.|..++....++-.... ...-+...|+++..|+..- +++++-..+-..|+.+.++
T Consensus 149 ~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~-----~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~ 223 (780)
T 2z6g_A 149 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEA-----SRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHH 223 (780)
T ss_dssp HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHH-----HHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS
T ss_pred hCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCCh-----hHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC
Confidence 5667777777766677788888887777765321 1234445677888776544 4788888999999998887
Q ss_pred HHHHHHHhcchhhHhhhhhccCCCchhhhhHHHHHHHHHhhChhHHHHHHHhhHHHHHHHHhHhhccCCCceehhchhhH
Q 023043 155 QSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKL 234 (288)
Q Consensus 155 e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefl~~nyd~Ff~~yn~~Ll~s~NYVTkRQSLKL 234 (288)
+.-...+.....+..+.+.++.++=++--.|..++..+-..+......+...+ .+...- .||.++|--.++.++..
T Consensus 224 ~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g---~v~~Lv-~lL~~~~~~v~~~a~~a 299 (780)
T 2z6g_A 224 REGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAG---GLQKMV-ALLNKTNVKFLAITTDC 299 (780)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTT---HHHHHH-HGGGCCCHHHHHHHHHH
T ss_pred chhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcC---CHHHHH-HHHhcCCHHHHHHHHHH
Confidence 77666777778888899999999888999999999998876544433333333 234443 78888876667777777
Q ss_pred HHHHhccCCchHHHHHhcCChhhHHHHHHHhhCCCC
Q 023043 235 LGDILLDRSNSVVMTRYVSSRENLRILMNLLRQEYP 270 (288)
Q Consensus 235 LgelLldr~N~~vM~rYi~~~~NLKl~M~LL~d~sk 270 (288)
|..+-. .|-......+. ...+..++.+|++.+.
T Consensus 300 L~~La~--~~~e~~~~i~~-~~~i~~Lv~lL~~~~~ 332 (780)
T 2z6g_A 300 LQILAY--GNQESKLIILA-SGGPQALVNIMRTYTY 332 (780)
T ss_dssp HHHHHT--TCHHHHHHHHT-TTHHHHHHHHHTTCCC
T ss_pred HHHHhc--CChHHHHHHHH-cCCHHHHHHHHhcCCH
Confidence 875553 34344333343 3567777778877643
No 18
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=88.08 E-value=1.4 Score=44.64 Aligned_cols=187 Identities=10% Similarity=0.162 Sum_probs=113.9
Q ss_pred HHHHhhCCCCChhhhhhHHHHHHHHhhhcccCccchhhHhhcCHhHHHHHHHhcc--CchhhhhHHHHHHHHHHHHHHHH
Q 023043 82 RLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYE--NTDMALHYGAMLRECIRHQSVAR 159 (288)
Q Consensus 82 ~~Li~~l~~L~fE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~peil~~L~~gY~--~~dial~~G~mLRecik~e~la~ 159 (288)
..++.++..-+-+.|.-++..+.+.+++.-.. .| . ..+..|-..|+.+-. ++.+-..++..+.+.++++...
T Consensus 51 ~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w~~-~~-~---~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~- 124 (852)
T 4fdd_A 51 IFVLTKLKSEDEPTRSLSGLILKNNVKAHFQN-FP-N---GVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQ- 124 (852)
T ss_dssp HHHHHTCTTSCHHHHHHHHHHHHHHTTTSGGG-CC-H---HHHHHHHHHHHTTTTCSSHHHHHHHHHHHHHHHHHTTTT-
T ss_pred HHHHhccCCCChHHHHHHHHHHHHHHHHccCC-CC-H---HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCcc-
Confidence 34444555667788887777777777543211 00 0 112344444544443 4566667777777777665211
Q ss_pred HHhcchhhHhhhhhccCCCchhhhhHHHHHHHHHhhChhHHH-HHHHhhHHHHHHHHhHhhccCCCceehhchhhHHHHH
Q 023043 160 YVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVA-EFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLLGDI 238 (288)
Q Consensus 160 ~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lva-efl~~nyd~Ff~~yn~~Ll~s~NYVTkRQSLKLLgel 238 (288)
-+.+.+-.+++.++.++..+---|+.++..+....+.... +.+....+.++..+- +++.+++--.|..+++-|+.+
T Consensus 125 --~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~-~~l~~~~~~vR~~A~~aL~~~ 201 (852)
T 4fdd_A 125 --NWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFL-QFFKHSSPKIRSHAVACVNQF 201 (852)
T ss_dssp --TCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHT-TTTTCSSHHHHHHHHHHHHTT
T ss_pred --ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHH-HHhcCCCHHHHHHHHHHHHHH
Confidence 1222344556677777777766777777777654433221 122233566666664 788899999999999999988
Q ss_pred hccCCchHHHHHhcCChhhHHHHHHHhhCCCCCcccccceeee
Q 023043 239 LLDRSNSVVMTRYVSSRENLRILMNLLRQEYPDRSISCFQAVC 281 (288)
Q Consensus 239 Lldr~N~~vM~rYi~~~~NLKl~M~LL~d~sknIQ~EAFhVf~ 281 (288)
+-... ..+..++ ++-+..+..++.|++..++-.|++.+.
T Consensus 202 ~~~~~--~~~~~~~--~~~l~~l~~~~~d~~~~vr~~a~~~L~ 240 (852)
T 4fdd_A 202 IISRT--QALMLHI--DSFIENLFALAGDEEPEVRKNVCRALV 240 (852)
T ss_dssp TTTTC--HHHHTSH--HHHHHHHHHHHTCCCHHHHHHHHHHHH
T ss_pred Hhccc--HHHHHHH--HHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 74432 2222222 456788888889988888888877654
No 19
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=87.72 E-value=2.4 Score=39.45 Aligned_cols=134 Identities=13% Similarity=0.114 Sum_probs=80.7
Q ss_pred CchhhhhHHHHHHHHHHH----HHHHHHHhcchhhHhhhhhccCCCc-hhhhhHHHHHHHHHhhChhHHHHHHHhhHHHH
Q 023043 137 NTDMALHYGAMLRECIRH----QSVARYVLESQHMKKFFDYIQLPNF-DIAADAAATFKELLTRHKSTVAEFLSKNYDWF 211 (288)
Q Consensus 137 ~~dial~~G~mLRecik~----e~la~~iL~~~~f~~fF~yv~~~~F-diasDAf~TfkelLt~Hk~lvaefl~~nyd~F 211 (288)
++++-..+-..|+....+ +.....+.....+..+.+.++.++. ++...|..++..+-. +......+...+ +
T Consensus 323 ~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~-~~~~~~~~~~~~---~ 398 (529)
T 1jdh_A 323 REDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL-CPANHAPLREQG---A 398 (529)
T ss_dssp CHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTT-SGGGHHHHHHTT---H
T ss_pred HHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhc-ChhhhHHHHHcC---C
Confidence 355555555555544432 2234455555566777778887774 888888888888764 443334444443 2
Q ss_pred HHHHhHhhccCCCceehh----------------------chhhHHHHHhccCCchHHHHHhcCChhhHHHHHHHhhCCC
Q 023043 212 FAEYNSKLLESSNYITRR----------------------QAVKLLGDILLDRSNSVVMTRYVSSRENLRILMNLLRQEY 269 (288)
Q Consensus 212 f~~yn~~Ll~s~NYVTkR----------------------QSLKLLgelLldr~N~~vM~rYi~~~~NLKl~M~LL~d~s 269 (288)
....- .++.++++-+|+ .++.-|+.+..+..|...+. +..-+..+..+|.|+.
T Consensus 399 i~~L~-~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~~~~~~~l~----~~~~v~~l~~ll~~~~ 473 (529)
T 1jdh_A 399 IPRLV-QLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIR----GLNTIPLFVQLLYSPI 473 (529)
T ss_dssp HHHHH-HHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTSHHHHHHHH----HTTCHHHHHHGGGCSC
T ss_pred HHHHH-HHHHHHhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhcCchHHHHHh----ccCCccHHHHHHcCCc
Confidence 33332 566666666665 34556666665554443333 3456788889999999
Q ss_pred CCccccccee
Q 023043 270 PDRSISCFQA 279 (288)
Q Consensus 270 knIQ~EAFhV 279 (288)
.+||..|-.+
T Consensus 474 ~~v~~~a~~~ 483 (529)
T 1jdh_A 474 ENIQRVAAGV 483 (529)
T ss_dssp HHHHHHHHHH
T ss_pred hHHHHHHHHH
Confidence 9998877554
No 20
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=86.54 E-value=11 Score=39.48 Aligned_cols=195 Identities=11% Similarity=0.132 Sum_probs=121.7
Q ss_pred HHHHHHHHHhhchHHHHHhhCCCCChhhhhhHHHHHHHHhhhcccCccchhhHhhcC---HhHHHHHHHhccCchhhhhH
Q 023043 68 CAQLTAEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEAN---IDLLDILIAGYENTDMALHY 144 (288)
Q Consensus 68 ~~qLa~ei~~~dll~~Li~~l~~L~fE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~---peil~~L~~gY~~~dial~~ 144 (288)
+..-++.+...+.++.|+..+..=+-+.|+.++.+..++-..+ +..+.+..+ |-++..|-.|.... --.-+
T Consensus 484 v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~-----~~r~~Vv~~Gaip~Lv~LL~s~~~~~-k~~Aa 557 (810)
T 3now_A 484 INKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLK-----ELRGKVVQEGGVKALLRMALEGTEKG-KRHAT 557 (810)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSH-----HHHHHHHHTTHHHHHHHHHHSSCHHH-HHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH-----HHHHHHHHCCCHHHHHHHHccCCHHH-HHHHH
Confidence 3333478899999999999999888899999999999996421 234555553 55555555553210 01111
Q ss_pred HHHHHHHHHHHHHHHHHhc----chhhHhhhhhccCCCc-hhhhhHHHHHHHHHhhChhHHHHHHHhhHHHHHHHHhHhh
Q 023043 145 GAMLRECIRHQSVARYVLE----SQHMKKFFDYIQLPNF-DIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKL 219 (288)
Q Consensus 145 G~mLRecik~e~la~~iL~----~~~f~~fF~yv~~~~F-diasDAf~TfkelLt~Hk~lvaefl~~nyd~Ff~~yn~~L 219 (288)
..+-+=|+-.++ ..++. .+.+-.+.+.+..+.- ....+|...+.-|.+.........+... .+...- .|
T Consensus 558 ~AL~nL~~~~~p--~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG---~l~~Lv-~L 631 (810)
T 3now_A 558 QALARIGITINP--EVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQ---GVSKIE-YY 631 (810)
T ss_dssp HHHHHHHHHSCH--HHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTT---HHHHHH-HH
T ss_pred HHHHHHhcCCCh--hhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcC---CHHHHH-HH
Confidence 222222221111 01110 0123344444443322 2234677777776665544444444433 355563 78
Q ss_pred ccCCCceehhchhhHHHHHhccCCchHHHHHhcCChhhHHHHHHHhhCCCCCcccccc
Q 023043 220 LESSNYITRRQAVKLLGDILLDRSNSVVMTRYVSSRENLRILMNLLRQEYPDRSISCF 277 (288)
Q Consensus 220 l~s~NYVTkRQSLKLLgelLldr~N~~vM~rYi~~~~NLKl~M~LL~d~sknIQ~EAF 277 (288)
+.++|--.++.++.+|+.|...+. ...+++.+..-++.+..||.+++..+|-+|-
T Consensus 632 L~s~~~~Vq~~A~~~L~NLa~~~~---~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa 686 (810)
T 3now_A 632 LMEDHLYLTRAAAQCLCNLVMSED---VIKMFEGNNDRVKFLALLCEDEDEETATACA 686 (810)
T ss_dssp HHSCCTTHHHHHHHHHHHHTTSHH---HHHHHHSSSSHHHHHHHGGGCSSHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHhCChH---HHHHHHhccCcHHHHHHHhcCCCHHHHHHHH
Confidence 889999999999999999997654 5667776678999999999999988888763
No 21
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=85.90 E-value=15 Score=35.14 Aligned_cols=198 Identities=10% Similarity=0.111 Sum_probs=119.8
Q ss_pred HHHHhhchHHHHHhhCCCCChhhhhhHHHHHHHHhhhcccCccchhhHhhcC--HhHHHHHHHhccCchhhhhHHHHHHH
Q 023043 73 AEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEAN--IDLLDILIAGYENTDMALHYGAMLRE 150 (288)
Q Consensus 73 ~ei~~~dll~~Li~~l~~L~fE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~--peil~~L~~gY~~~dial~~G~mLRe 150 (288)
+.+...+.+..|+..|..=+.+.+..+.....++..... .....+... -..|..|+.. .++++--.+...|..
T Consensus 287 ~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~----~~~~~i~~~g~l~~L~~LL~~-~~~~i~~~a~~aL~n 361 (529)
T 3tpo_A 287 EMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTD----EQTQKVIDAGALAVFPSLLTN-PKTNIQKEATWTMSN 361 (529)
T ss_dssp HHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCH----HHHHHHHHTTGGGGHHHHTTC-SSHHHHHHHHHHHHH
T ss_pred HHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccch----HHHHHHhhcccHHHHHHHHcC-CCHHHHHHHHHHHHH
Confidence 345677888999999888888888888888888764221 111222211 1122222221 234444444455555
Q ss_pred HHH-HHHHHHHHhcchhhHhhhhhccCCCchhhhhHHHHHHHHHhhCh-hHHHHHHHhhHHHHHHHHhHhhccCCCceeh
Q 023043 151 CIR-HQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHK-STVAEFLSKNYDWFFAEYNSKLLESSNYITR 228 (288)
Q Consensus 151 cik-~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk-~lvaefl~~nyd~Ff~~yn~~Ll~s~NYVTk 228 (288)
+.. .+.....+.....+..+...+..+++++-..|..++.-+..... .-+......+ ..... ..||.+++-=+.
T Consensus 362 l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g---~i~~L-~~LL~~~d~~i~ 437 (529)
T 3tpo_A 362 ITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCG---IIEPL-MNLLSAKDTKII 437 (529)
T ss_dssp HHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTT---CHHHH-HHGGGCSCHHHH
T ss_pred HhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCc---CHHHH-HHHhcCCCHHHH
Confidence 444 45556667777788888889999999999999888888765432 2222222322 23333 378888887778
Q ss_pred hchhhHHHHHhc---cCCchHHHHHhcCChhhHHHHHHHhhCCCCCccccccee
Q 023043 229 RQAVKLLGDILL---DRSNSVVMTRYVSSRENLRILMNLLRQEYPDRSISCFQA 279 (288)
Q Consensus 229 RQSLKLLgelLl---dr~N~~vM~rYi~~~~NLKl~M~LL~d~sknIQ~EAFhV 279 (288)
+.+|.-|..|+- .-.+.+-+..+|.+..=++.+-.|..+++..|+=-|+.+
T Consensus 438 ~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~i 491 (529)
T 3tpo_A 438 QVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNL 491 (529)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHH
Confidence 888888887762 112333444555555556666666666666665555444
No 22
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=85.45 E-value=20 Score=32.14 Aligned_cols=143 Identities=10% Similarity=0.122 Sum_probs=80.0
Q ss_pred CHhHHHHHHHhccCc--hhhh--hHHHHHHHHHH---HHHHHHHHhcchhhHhhhhhccCC--CchhhhhHHHHHHHHHh
Q 023043 124 NIDLLDILIAGYENT--DMAL--HYGAMLRECIR---HQSVARYVLESQHMKKFFDYIQLP--NFDIAADAAATFKELLT 194 (288)
Q Consensus 124 ~peil~~L~~gY~~~--dial--~~G~mLRecik---~e~la~~iL~~~~f~~fF~yv~~~--~FdiasDAf~TfkelLt 194 (288)
-|+++..|+....++ +... .+=..|+...+ .+.+..++ .+.+..+...++.+ +=+|-.-|..++..++.
T Consensus 126 w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~--~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~ 203 (462)
T 1ibr_B 126 WPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS--NEILTAIIQGMRKEEPSNNVKLAATNALLNSLE 203 (462)
T ss_dssp CTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH--HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH--HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH
Confidence 488888888877654 3222 22223333332 11110000 11233444555555 56666667666666542
Q ss_pred hChhHHHHHHHhhH-----HH-HHHHHhHhhccCCCceehhchhhHHHHHhccCCchHHHHHhcCChhhHHHHHHHhhCC
Q 023043 195 RHKSTVAEFLSKNY-----DW-FFAEYNSKLLESSNYITRRQAVKLLGDILLDRSNSVVMTRYVSSRENLRILMNLLRQE 268 (288)
Q Consensus 195 ~Hk~lvaefl~~ny-----d~-Ff~~yn~~Ll~s~NYVTkRQSLKLLgelLldr~N~~vM~rYi~~~~NLKl~M~LL~d~ 268 (288)
|+..+. .. +.... ..++.+++--.|+++++.|+++.-.. ...+..|+.. .-+..++..++|.
T Consensus 204 --------~~~~~~~~~~~~~~l~~~l-~~~~~~~~~~vr~~~~~~l~~l~~~~--~~~~~~~~~~-~l~~~~~~~~~~~ 271 (462)
T 1ibr_B 204 --------FTKANFDKESERHFIMQVV-CEATQCPDTRVRVAALQNLVKIMSLY--YQYMETYMGP-ALFAITIEAMKSD 271 (462)
T ss_dssp --------TTHHHHTSHHHHHHHHHHH-HHHTTCSSHHHHHHHHHHHHHHHHHC--GGGCTTTTTT-THHHHHHHHHHCS
T ss_pred --------HHHHhhhhhHHHHHHHHHH-HHhcCCCCHHHHHHHHHHHHHHHHHH--HHHHHHHHHH-HHHHHHHHHHcCC
Confidence 111111 12 23333 25678888888999999999998543 3444455542 4566777888888
Q ss_pred CCCcccccceee
Q 023043 269 YPDRSISCFQAV 280 (288)
Q Consensus 269 sknIQ~EAFhVf 280 (288)
...++..|+..+
T Consensus 272 ~~~v~~~a~~~l 283 (462)
T 1ibr_B 272 IDEVALQGIEFW 283 (462)
T ss_dssp SHHHHHHHHHHH
T ss_pred chHHHHHHHHHH
Confidence 888887777644
No 23
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=84.98 E-value=26 Score=34.14 Aligned_cols=181 Identities=12% Similarity=0.136 Sum_probs=117.8
Q ss_pred HhhchHHHHHhhCCCCChhhhhhHHHHHHHHhhhcccCccchhhHhhcCHhHHHHHHHhc---cCchhhhhHHHHHHHHH
Q 023043 76 FRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGY---ENTDMALHYGAMLRECI 152 (288)
Q Consensus 76 ~~~dll~~Li~~l~~L~fE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~peil~~L~~gY---~~~dial~~G~mLReci 152 (288)
+..+.+..|+..|..=+-+.|..++....++-... +...-+..++.++..|+..- +++++-..+-..|+.+.
T Consensus 11 ~~~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~-----~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls 85 (644)
T 2z6h_A 11 LATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKE-----ASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLS 85 (644)
T ss_dssp -CTTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTST-----THHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHT
T ss_pred hhhchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCC-----hhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHh
Confidence 34556777777776667778888888887776532 12333445566666665543 36778788888899888
Q ss_pred HHHHHHHHHhcchhhHhhhhhccCCCchhhhhHHHHHHHHHhhChhHHHHHHHhhHHHHHHHHhHhhccCCCceehhchh
Q 023043 153 RHQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAV 232 (288)
Q Consensus 153 k~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefl~~nyd~Ff~~yn~~Ll~s~NYVTkRQSL 232 (288)
+++.....+.....+-.+.+.++.++-++-..|..++..+...+......+.... .....- .+|.++|--.+..++
T Consensus 86 ~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g---~i~~Lv-~lL~~~~~~~~~~a~ 161 (644)
T 2z6h_A 86 HHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAG---GLQKMV-ALLNKTNVKFLAITT 161 (644)
T ss_dssp TSHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTT---HHHHHH-HGGGCCCHHHHHHHH
T ss_pred cChhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCC---ChHHHH-HHHCcCCHHHHHHHH
Confidence 8877777777888888899999999888999999999998876544443444333 233442 678887754455556
Q ss_pred hHHHHHhc-cCCchHHHHHhcCChhhHHHHHHHhhCCC
Q 023043 233 KLLGDILL-DRSNSVVMTRYVSSRENLRILMNLLRQEY 269 (288)
Q Consensus 233 KLLgelLl-dr~N~~vM~rYi~~~~NLKl~M~LL~d~s 269 (288)
..|+.+-. +..|...+ .+..-+..++.+|++.+
T Consensus 162 ~~L~~La~~~~~~~~~i----~~~g~v~~Lv~lL~~~~ 195 (644)
T 2z6h_A 162 DCLQILAYGNQESKLII----LASGGPQALVNIMRTYT 195 (644)
T ss_dssp HHHHHHHTTCHHHHHHH----HHTTHHHHHHHHHTTCC
T ss_pred HHHHHHHhcCcHHHHHH----HHcCChHHHHHHHHcCC
Confidence 67777664 22222222 12244666666776654
No 24
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=84.31 E-value=11 Score=31.88 Aligned_cols=176 Identities=12% Similarity=0.138 Sum_probs=106.8
Q ss_pred HHhhCCCCChhhhhhHHHHHHHHhhhcccCccchhhHhhcCHhHHHHHHHhcc-Cchhhh--hHHHHHHHHHHH--HHHH
Q 023043 84 LITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYE-NTDMAL--HYGAMLRECIRH--QSVA 158 (288)
Q Consensus 84 Li~~l~~L~fE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~peil~~L~~gY~-~~dial--~~G~mLRecik~--e~la 158 (288)
+...+..=+|..|+.+..-...++....+ ... ....+++..|...-. +++... .+-..|-.+++. +.+.
T Consensus 20 l~~~l~s~~w~~R~~a~~~L~~l~~~~~~--~~~----~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~ 93 (242)
T 2qk2_A 20 FYDKLEEKKWTLRKESLEVLEKLLTDHPK--LEN----GEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFS 93 (242)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHCSS--BCC----CCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGH
T ss_pred HHhhhccCCHHHHHHHHHHHHHHHccCCC--CCC----CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHH
Confidence 44445577899999998888888764111 111 113567777766663 444332 111111111110 0011
Q ss_pred HHHhcchhhHhhhhhccCCCchhhhhHHHHHHHHHhhChhHHHHHHHhhHHHHHHHHhHhhccCCCceehhchhhHHHHH
Q 023043 159 RYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLLGDI 238 (288)
Q Consensus 159 ~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefl~~nyd~Ff~~yn~~Ll~s~NYVTkRQSLKLLgel 238 (288)
.++ ...+-.+++.+.-++=.|..-|..++..+.... +++.+....- ..+.+.|.-+|.+++.+|+.+
T Consensus 94 ~~~--~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~----------~~~~ll~~l~-~~l~~~~~~vr~~~l~~l~~~ 160 (242)
T 2qk2_A 94 NYA--SACVPSLLEKFKEKKPNVVTALREAIDAIYAST----------SLEAQQESIV-ESLSNKNPSVKSETALFIARA 160 (242)
T ss_dssp HHH--HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTS----------CHHHHHHHHH-HHTTCSCHHHHHHHHHHHHHH
T ss_pred HHH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcC----------CHHHHHHHHH-HHHcCCChHHHHHHHHHHHHH
Confidence 100 012334455556677778888888888876632 3566677774 788899999999999999998
Q ss_pred hccCCchHHHHHhcCChhhHHHHHHHhhCCCCCcccccceee
Q 023043 239 LLDRSNSVVMTRYVSSRENLRILMNLLRQEYPDRSISCFQAV 280 (288)
Q Consensus 239 Lldr~N~~vM~rYi~~~~NLKl~M~LL~d~sknIQ~EAFhVf 280 (288)
+..-..-..+..|+ +.-+..++.+|.|+...++-.|+-.+
T Consensus 161 l~~~~~~~~~~~~l--~~l~p~l~~~l~D~~~~VR~~A~~~l 200 (242)
T 2qk2_A 161 LTRTQPTALNKKLL--KLLTTSLVKTLNEPDPTVRDSSAEAL 200 (242)
T ss_dssp HTTCCGGGCCHHHH--HHHHHHHHHHHTSSCHHHHHHHHHHH
T ss_pred HHHcCCCCccHHHH--HHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 85432233445566 46778888899999888887776543
No 25
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=84.26 E-value=26 Score=32.34 Aligned_cols=181 Identities=12% Similarity=0.106 Sum_probs=114.2
Q ss_pred hhchHHHHHhhCCCCChhhhhhHHHHHHHHhhhcccCccchhhHhhcCHhHHHHHHHh---ccCchhhhhHHHHHHHHHH
Q 023043 77 RENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAG---YENTDMALHYGAMLRECIR 153 (288)
Q Consensus 77 ~~dll~~Li~~l~~L~fE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~peil~~L~~g---Y~~~dial~~G~mLRecik 153 (288)
..+.+..|+.-|..=+-+.|..++....++-+.. +..+-+...+.++..|+.. -+++++-..+-..|+.+.+
T Consensus 15 ~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~-----~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~ 89 (529)
T 1jdh_A 15 ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKE-----ASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH 89 (529)
T ss_dssp --CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSH-----HHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT
T ss_pred hHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCC-----ccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHc
Confidence 3455666666666667777888887777776432 1223344445555555433 2467888888888999888
Q ss_pred HHHHHHHHhcchhhHhhhhhccCCCchhhhhHHHHHHHHHhhChhHHHHHHHhhHHHHHHHHhHhhccCCCceehhchhh
Q 023043 154 HQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVK 233 (288)
Q Consensus 154 ~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefl~~nyd~Ff~~yn~~Ll~s~NYVTkRQSLK 233 (288)
.+.....+.....+-.+.+.+..++-++-..|..++..+...+......+...+ .....- .++.+++--.+..+..
T Consensus 90 ~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g---~i~~L~-~ll~~~~~~~~~~~~~ 165 (529)
T 1jdh_A 90 HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAG---GLQKMV-ALLNKTNVKFLAITTD 165 (529)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHT---HHHHHH-HGGGCCCHHHHHHHHH
T ss_pred CchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcC---CHHHHH-HHHhcCCHHHHHHHHH
Confidence 877777777888888899999999988989999999998776543333333332 233442 6788877666666677
Q ss_pred HHHHHhccCCchHHHHHhcCChhhHHHHHHHhhCCC
Q 023043 234 LLGDILLDRSNSVVMTRYVSSRENLRILMNLLRQEY 269 (288)
Q Consensus 234 LLgelLldr~N~~vM~rYi~~~~NLKl~M~LL~d~s 269 (288)
.|+.+-.+ |-......+. ..-+..++.+|++.+
T Consensus 166 ~L~~la~~--~~~~~~~i~~-~~~i~~L~~ll~~~~ 198 (529)
T 1jdh_A 166 CLQILAYG--NQESKLIILA-SGGPQALVNIMRTYT 198 (529)
T ss_dssp HHHHHHTT--CHHHHHHHHH-TTHHHHHHHHHHHCC
T ss_pred HHHHHHhC--CHHHHHHHHH-CCCHHHHHHHHHhCC
Confidence 77766542 2222111221 234556666666553
No 26
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=83.33 E-value=14 Score=36.48 Aligned_cols=185 Identities=13% Similarity=0.105 Sum_probs=109.9
Q ss_pred hHHHHHhhCCCCChhhhhhHHHHHHHHhhhcccCccchhhHhhcCHhHHHHHHHhc--cCchhhhhHHHHHHHHHHHHHH
Q 023043 80 TLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGY--ENTDMALHYGAMLRECIRHQSV 157 (288)
Q Consensus 80 ll~~Li~~l~~L~fE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~peil~~L~~gY--~~~dial~~G~mLRecik~e~l 157 (288)
++..+...+..-+.+.|+.+..++..+....... ...|+. ++++..++.+. +++++...+-..+..+.+++.-
T Consensus 218 il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~--~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~ 292 (876)
T 1qgr_A 218 IMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQY---METYMG--PALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMD 292 (876)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGG---CHHHHT--TTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHH---HHHHHH--HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHh
Confidence 5666666777778899999999999888754321 123442 46777777654 4456677766666666665421
Q ss_pred ----------------------HHHHhcchhhHhhhhhcc-------CCCchhhhhHHHHHHHHHhhChhHHHHHHHhhH
Q 023043 158 ----------------------ARYVLESQHMKKFFDYIQ-------LPNFDIAADAAATFKELLTRHKSTVAEFLSKNY 208 (288)
Q Consensus 158 ----------------------a~~iL~~~~f~~fF~yv~-------~~~FdiasDAf~TfkelLt~Hk~lvaefl~~ny 208 (288)
.+..+ .+.+-.+++.+. ..++.+.-.|...+..+-..-.. .-.
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~-------~~~ 364 (876)
T 1qgr_A 293 LAIEASEAAEQGRPPEHTSKFYAKGAL-QYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED-------DIV 364 (876)
T ss_dssp HHHHHHHHHHHSSCCSSCCCCHHHHHH-HHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG-------GGH
T ss_pred HhhhhccccccCCCccchhHHHHHHHH-HHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcH-------hhH
Confidence 00000 111122233321 23445544444444444322111 123
Q ss_pred HHHHHHHhHhhccCCCceehhchhhHHHHHhccCCchHHHHHhcCChhhHHHHHHHhhCCCCCcccccceeee
Q 023043 209 DWFFAEYNSKLLESSNYITRRQAVKLLGDILLDRSNSVVMTRYVSSRENLRILMNLLRQEYPDRSISCFQAVC 281 (288)
Q Consensus 209 d~Ff~~yn~~Ll~s~NYVTkRQSLKLLgelLldr~N~~vM~rYi~~~~NLKl~M~LL~d~sknIQ~EAFhVf~ 281 (288)
+.++.... ..+.+++.-.|..++..||.+.-.-. -..+..|+ +.-+..+...|.|++..++..|..++.
T Consensus 365 ~~~l~~l~-~~l~~~~~~~r~~a~~~l~~i~~~~~-~~~~~~~~--~~~l~~l~~~l~d~~~~vr~~a~~~l~ 433 (876)
T 1qgr_A 365 PHVLPFIK-EHIKNPDWRYRDAAVMAFGCILEGPE-PSQLKPLV--IQAMPTLIELMKDPSVVVRDTAAWTVG 433 (876)
T ss_dssp HHHHHHHH-HHTTCSSHHHHHHHHHHHHHTSSSSC-HHHHHHHH--HHHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHccCCChHHHHHHHHHHHHHHcCCC-HHHHHHHH--HHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 44555554 67889999999999999999884322 12344555 456778888999999888877766543
No 27
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=82.12 E-value=7.5 Score=37.12 Aligned_cols=194 Identities=12% Similarity=0.142 Sum_probs=127.0
Q ss_pred HHHhhchHHHHHhhCCCCChhh-----hhhHHHHHHHHhhhcccCccchhhHhhcCHhHHHHHHHh--ccCchhhhhHHH
Q 023043 74 EFFRENTLRLLITCLPKLNLEA-----RKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAG--YENTDMALHYGA 146 (288)
Q Consensus 74 ei~~~dll~~Li~~l~~L~fE~-----RKdv~~If~~llr~~~~~r~p~v~Yl~~~peil~~L~~g--Y~~~dial~~G~ 146 (288)
.+.+.+.+..|+..|..-+.+. .+.++....++.+.+.. .+....+ ..++..|+.. .+++++-..+-.
T Consensus 180 ~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~--~~~~~~~---~~~lp~L~~LL~~~~~~v~~~A~~ 254 (510)
T 3ul1_B 180 LVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNP--APPLDAV---EQILPTLVRLLHHNDPEVLADSCW 254 (510)
T ss_dssp HHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSS--CCCHHHH---HHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred HHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccc--hhHHHHH---HhHHHHHHHHHhcCCHHHHHHHHH
Confidence 3455667788888887655543 33444455555553321 1112222 2344444443 345566666666
Q ss_pred HHHHHHHH-HHHHHHHhcchhhHhhhhhccCCCchhhhhHHHHHHHHHhhChhHHHHHHHhhHHHHHHHHhHhhccCCCc
Q 023043 147 MLRECIRH-QSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNY 225 (288)
Q Consensus 147 mLRecik~-e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefl~~nyd~Ff~~yn~~Ll~s~NY 225 (288)
.|+.+..+ +.....+........+.+++..++-++..-|..++..+.+.........+... ....+- .||.+++-
T Consensus 255 aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g---~l~~L~-~LL~~~~~ 330 (510)
T 3ul1_B 255 AISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAG---ALAVFP-SLLTNPKT 330 (510)
T ss_dssp HHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTT---GGGGCC--CTTCSSH
T ss_pred HHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhcc---chHHHH-HHhcCCCH
Confidence 67766654 34455677777888888999999999999999999998887766555555443 233443 78999999
Q ss_pred eehhchhhHHHHHhccCCchHHHHHhcCChhhHHHHHHHhhCCCCCccccccee
Q 023043 226 ITRRQAVKLLGDILLDRSNSVVMTRYVSSRENLRILMNLLRQEYPDRSISCFQA 279 (288)
Q Consensus 226 VTkRQSLKLLgelLldr~N~~vM~rYi~~~~NLKl~M~LL~d~sknIQ~EAFhV 279 (288)
-+++.+...|+.|.....+ ....|-+..-+..+..+|++.+..+|-||-.+
T Consensus 331 ~v~~~A~~aL~nl~a~~~~---~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~a 381 (510)
T 3ul1_B 331 NIQKEATWTMSNITAGRQD---QIQQVVNHGLVPFLVGVLSKADFKTQKEAAWA 381 (510)
T ss_dssp HHHHHHHHHHHHHTTSCHH---HHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCcHH---HHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHH
Confidence 9999999999999854322 23344455678889999999998888887544
No 28
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=82.01 E-value=6.2 Score=41.53 Aligned_cols=148 Identities=13% Similarity=0.146 Sum_probs=91.7
Q ss_pred hHHHHHhhCCCCChhhhhhHHHHHHHHhhhcccCccchhhHhhcCHhHHHHHHHhccC--chhhhhHHHHHHHHHHHHHH
Q 023043 80 TLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYEN--TDMALHYGAMLRECIRHQSV 157 (288)
Q Consensus 80 ll~~Li~~l~~L~fE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~peil~~L~~gY~~--~dial~~G~mLRecik~e~l 157 (288)
++..|+..|..=+.+.|+-++.....+...- +. . ..+.|+..|+.+..+ +.+-..++.-|..++.+-.-
T Consensus 49 il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~-----~~-~---~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~ 119 (1230)
T 1u6g_C 49 VVKMILKLLEDKNGEVQNLAVKCLGPLVSKV-----KE-Y---QVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPP 119 (1230)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHHTTS-----CH-H---HHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHhC-----CH-H---HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCC
Confidence 4555666677778889998888888776521 11 2 237788888888654 34434455555554432110
Q ss_pred H------HHHhcchhhHhhhhhcc-CCCchhhhhHHHHHHHHHhhChhHHHHHHHhhHHHHHHHHhHhhccCCCceehhc
Q 023043 158 A------RYVLESQHMKKFFDYIQ-LPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQ 230 (288)
Q Consensus 158 a------~~iL~~~~f~~fF~yv~-~~~FdiasDAf~TfkelLt~Hk~lvaefl~~nyd~Ff~~yn~~Ll~s~NYVTkRQ 230 (288)
. ..-...+.+-.+++.++ .++.++...|+.++.+++....+.+.. ..+.+...+- .++.+++-.+|++
T Consensus 120 ~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~----~~~~ll~~l~-~~L~~~~~~vR~~ 194 (1230)
T 1u6g_C 120 ASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVN----FHPSILTCLL-PQLTSPRLAVRKR 194 (1230)
T ss_dssp ----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTT----THHHHHHHHG-GGGGCSSHHHHHH
T ss_pred cccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHH----HHHHHHHHHH-HHHcCCcHHHHHH
Confidence 0 00011223445666676 588999999999999998654432222 3355666663 6777777778888
Q ss_pred hhhHHHHHhcc
Q 023043 231 AVKLLGDILLD 241 (288)
Q Consensus 231 SLKLLgelLld 241 (288)
+++-||.+...
T Consensus 195 a~~al~~l~~~ 205 (1230)
T 1u6g_C 195 TIIALGHLVMS 205 (1230)
T ss_dssp HHHHHHHHTTT
T ss_pred HHHHHHHHHHh
Confidence 88888887743
No 29
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=81.47 E-value=37 Score=32.22 Aligned_cols=184 Identities=13% Similarity=0.163 Sum_probs=119.5
Q ss_pred chHHHHHhhCCCCChhhhhhHHHHHHHHhhhcccCccchhhHhhcCHhHHHHHHH--hccCchhhhhHHHHHHHHHH-HH
Q 023043 79 NTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIA--GYENTDMALHYGAMLRECIR-HQ 155 (288)
Q Consensus 79 dll~~Li~~l~~L~fE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~peil~~L~~--gY~~~dial~~G~mLRecik-~e 155 (288)
..++.|+..+..=+-+.+.+++....+|.....+ ..+.+.. ..++..|+. +..++++-..+-..|..+.. .+
T Consensus 232 ~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~----~~~~i~~-~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~ 306 (510)
T 3ul1_B 232 QILPTLVRLLHHNDPEVLADSCWAISYLTDGPNE----RIEMVVK-KGVVPQLVKLLGATELPIVTPALRAIGNIVTGTD 306 (510)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHH----HHHHHHT-TTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCH
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhh----hHHHHHh-cccchhhhhhhcCCChhhhhHHHHHHHHhhcCCH
Confidence 4567778888887888888888877777642211 1122211 112222211 23445555555556665544 45
Q ss_pred HHHHHHhcchhhHhhhhhccCCCchhhhhHHHHHHHHHhhChhHHHHHHHhhHHHHHHHHhHhhccCCCceehhchhhHH
Q 023043 156 SVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLL 235 (288)
Q Consensus 156 ~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefl~~nyd~Ff~~yn~~Ll~s~NYVTkRQSLKLL 235 (288)
..+..++....+..+...+..++=+|-..|..++..+....+......+..+ .+...- .++.++++-+|+.+...|
T Consensus 307 ~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g---~i~~Lv-~lL~~~~~~v~~~Aa~aL 382 (510)
T 3ul1_B 307 EQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHG---LVPFLV-GVLSKADFKTQKEAAWAI 382 (510)
T ss_dssp HHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTT---HHHHHH-HHHHSSCHHHHHHHHHHH
T ss_pred HHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcC---CHHHHH-HHHcCCCHHHHHHHHHHH
Confidence 6677788887788888888999999999999999998776666665555554 344553 788999999999999999
Q ss_pred HHHhccCCchHHHHHhcCChhhHHHHHHHhhCCCCCcc
Q 023043 236 GDILLDRSNSVVMTRYVSSRENLRILMNLLRQEYPDRS 273 (288)
Q Consensus 236 gelLldr~N~~vM~rYi~~~~NLKl~M~LL~d~sknIQ 273 (288)
+.+......-. .+|+-+..-++.++.||+++...|+
T Consensus 383 ~Nl~~~~~~~~--~~~L~~~g~i~~L~~LL~~~d~~i~ 418 (510)
T 3ul1_B 383 TNYTSGGTVEQ--IVYLVHCGIIEPLMNLLSAKDTKII 418 (510)
T ss_dssp HHHHHHCCHHH--HHHHHHTTCHHHHHHGGGCSCHHHH
T ss_pred HHHHccCCHHH--HHHHHHCCCHHHHHHHhcCCCHHHH
Confidence 99886543322 2344455667777777776655444
No 30
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=81.05 E-value=15 Score=34.06 Aligned_cols=165 Identities=13% Similarity=0.197 Sum_probs=108.3
Q ss_pred HHHhhchHHHHHhhC-CCCChhhhhhHHHHHHHHhhhcccCccchhhHhhcCHhHHHHHHH----hccCc--hhhhhHHH
Q 023043 74 EFFRENTLRLLITCL-PKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIA----GYENT--DMALHYGA 146 (288)
Q Consensus 74 ei~~~dll~~Li~~l-~~L~fE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~peil~~L~~----gY~~~--dial~~G~ 146 (288)
.+...+.++.|+..| ..=+-+.++.++....+|-....+.+ . -+......+..|+. +.+.+ ++.-.+..
T Consensus 165 ~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk---~-~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~ 240 (354)
T 3nmw_A 165 TLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENK---A-DICAVDGALAFLVGTLTYRSQTNTLAIIESGGG 240 (354)
T ss_dssp HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHH---H-HHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhh---H-HHHHhcCcHHHHHHHhccCCCcccHHHHHHHHH
Confidence 345566777777764 33456777766554444432111111 1 12212223333322 22211 46666677
Q ss_pred HHHHHHH----HHHHHHHHhcchhhHhhhhhccCCCchhhhhHHHHHHHHHhhChhHHHHHHHhhHHHHHHHHhHhhccC
Q 023043 147 MLRECIR----HQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLES 222 (288)
Q Consensus 147 mLRecik----~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefl~~nyd~Ff~~yn~~Ll~s 222 (288)
.||.... .+.-...+.+...+-.+.+.+..+++++-..|..++..+-...+.-.......+- +... ..|+.+
T Consensus 241 aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~---i~~L-v~LL~s 316 (354)
T 3nmw_A 241 ILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGA---VSML-KNLIHS 316 (354)
T ss_dssp HHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTH---HHHH-HTTTTC
T ss_pred HHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCC---HHHH-HHHHhC
Confidence 7887665 5666677888888999999999999999999999999987666666666665553 3344 379999
Q ss_pred CCceehhchhhHHHHHhccCCchH
Q 023043 223 SNYITRRQAVKLLGDILLDRSNSV 246 (288)
Q Consensus 223 ~NYVTkRQSLKLLgelLldr~N~~ 246 (288)
++--+++.+..-|..|..++.+..
T Consensus 317 ~~~~i~~~A~~aL~nL~~~~~~~~ 340 (354)
T 3nmw_A 317 KHKMIAMGSAAALRNLMANRPAKY 340 (354)
T ss_dssp SSHHHHHHHHHHHHHHHTTCCGGG
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999998877643
No 31
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=80.02 E-value=40 Score=33.21 Aligned_cols=149 Identities=10% Similarity=0.119 Sum_probs=81.6
Q ss_pred CHhHHHHHHHhccCc--hhhhhHH--HHHHHHHHH---HHHHHHHhcchh-hHhhhhhccCC--CchhhhhHHHHHHHHH
Q 023043 124 NIDLLDILIAGYENT--DMALHYG--AMLRECIRH---QSVARYVLESQH-MKKFFDYIQLP--NFDIAADAAATFKELL 193 (288)
Q Consensus 124 ~peil~~L~~gY~~~--dial~~G--~mLRecik~---e~la~~iL~~~~-f~~fF~yv~~~--~FdiasDAf~TfkelL 193 (288)
-|+++..|+..-+++ +...--| ..|..+++. +.+.. +.+. +..+.+.+..+ +-++...|+..+..+.
T Consensus 126 w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~---~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~ 202 (876)
T 1qgr_A 126 WPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQD---KSNEILTAIIQGMRKEEPSNNVKLAATNALLNSL 202 (876)
T ss_dssp CTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGG---GHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHG
T ss_pred cHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHh---HHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHH
Confidence 588888888777655 3222111 122222221 11100 0111 22334455555 6788888888888776
Q ss_pred hhChhHHHHHHHhhHHHHHHHHhHhhccCCCceehhchhhHHHHHhccCCchHHHHHhcCChhhHHHHHHHhhCCCCCcc
Q 023043 194 TRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLLGDILLDRSNSVVMTRYVSSRENLRILMNLLRQEYPDRS 273 (288)
Q Consensus 194 t~Hk~lvaefl~~nyd~Ff~~yn~~Ll~s~NYVTkRQSLKLLgelLldr~N~~vM~rYi~~~~NLKl~M~LL~d~sknIQ 273 (288)
..-..-....... +.+....- .++.+++.-.|+++++.|+.++-. ....+..|+. +.-+..+...+.|....++
T Consensus 203 ~~~~~~~~~~~~~--~~il~~l~-~~~~~~~~~vr~~a~~~l~~l~~~--~~~~~~~~~~-~~l~~~~~~~~~~~~~~v~ 276 (876)
T 1qgr_A 203 EFTKANFDKESER--HFIMQVVC-EATQCPDTRVRVAALQNLVKIMSL--YYQYMETYMG-PALFAITIEAMKSDIDEVA 276 (876)
T ss_dssp GGCHHHHTSHHHH--HHHHHHHH-HHTTCSSHHHHHHHHHHHHHHHHH--SGGGCHHHHT-TTHHHHHHHHHTCSSHHHH
T ss_pred HHHHHHHHhHHHH--HHHHHHHH-HHcCCCCHHHHHHHHHHHHHHHHH--hHHHHHHHHH-HHHHHHHHHHhcCCchHHH
Confidence 4211110000000 12444443 567788888889999999999853 3445566665 2346667777777777777
Q ss_pred cccceeee
Q 023043 274 ISCFQAVC 281 (288)
Q Consensus 274 ~EAFhVf~ 281 (288)
.+|+..+.
T Consensus 277 ~~al~~l~ 284 (876)
T 1qgr_A 277 LQGIEFWS 284 (876)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77765543
No 32
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=77.54 E-value=32 Score=33.15 Aligned_cols=162 Identities=14% Similarity=0.209 Sum_probs=106.3
Q ss_pred HHHhhchHHHHHhh-CCCCChhhhhhHHHHHHHHhhhcccCccchhhHhhcCHhHHHHHHH----hccCc--hhhhhHHH
Q 023043 74 EFFRENTLRLLITC-LPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIA----GYENT--DMALHYGA 146 (288)
Q Consensus 74 ei~~~dll~~Li~~-l~~L~fE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~peil~~L~~----gY~~~--dial~~G~ 146 (288)
.+...+.++.|+.. +..=+-+.++.++....+|-....+.+. -+......+..|+. +-+.+ ++.-.+..
T Consensus 281 ~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~----~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~ 356 (458)
T 3nmz_A 281 TLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKA----DICAVDGALAFLVGTLTYRSQTNTLAIIESGGG 356 (458)
T ss_dssp HHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHH----HHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHH----HHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHH
Confidence 44556778888886 4444667777655444444321111111 12212233333322 22222 36666777
Q ss_pred HHHHHHH----HHHHHHHHhcchhhHhhhhhccCCCchhhhhHHHHHHHHHhhChhHHHHHHHhhHHHHHHHHhHhhccC
Q 023043 147 MLRECIR----HQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLES 222 (288)
Q Consensus 147 mLRecik----~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefl~~nyd~Ff~~yn~~Ll~s 222 (288)
.||.+.. .+.-...+.+...+-.+.+.+..+++++-..|..++..+-...+..........- +.-. ..||.+
T Consensus 357 aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~---I~~L-v~LL~s 432 (458)
T 3nmz_A 357 ILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGA---VSML-KNLIHS 432 (458)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTH---HHHH-HTTTTC
T ss_pred HHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCC---HHHH-HHHHhC
Confidence 8888764 5666677788888899999999999999999999999987677766666666553 3344 379999
Q ss_pred CCceehhchhhHHHHHhccCC
Q 023043 223 SNYITRRQAVKLLGDILLDRS 243 (288)
Q Consensus 223 ~NYVTkRQSLKLLgelLldr~ 243 (288)
++--.++.+..-|..|+.+++
T Consensus 433 ~~~~v~~~Aa~AL~nL~~~~p 453 (458)
T 3nmz_A 433 KHKMIAMGSAAALRNLMANRP 453 (458)
T ss_dssp SSHHHHHHHHHHHHHHHTCCS
T ss_pred CCHHHHHHHHHHHHHHHcCCH
Confidence 999999999999999987653
No 33
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=76.65 E-value=19 Score=37.52 Aligned_cols=197 Identities=15% Similarity=0.135 Sum_probs=128.5
Q ss_pred HHHHHhhchHHHHHhhCCCCChhhhhhHHHHHHHHhhhcccCccchhh-HhhcCHhHHHHHHHhccCc-h-h-hhhHHHH
Q 023043 72 TAEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASD-YLEANIDLLDILIAGYENT-D-M-ALHYGAM 147 (288)
Q Consensus 72 a~ei~~~dll~~Li~~l~~L~fE~RKdv~~If~~llr~~~~~r~p~v~-Yl~~~peil~~L~~gY~~~-d-i-al~~G~m 147 (288)
.+.+.+.+.++.|+.-|..=+.+.|+.++...+++.+... |... +...-.+++.-|+.--... + . -..+=.-
T Consensus 529 r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~----p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~A 604 (810)
T 3now_A 529 RGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITIN----PEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMA 604 (810)
T ss_dssp HHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSC----HHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCC----hhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 4456777888899988888888999999988888876321 1100 0000012333333322211 1 1 0112223
Q ss_pred HHHHHHH-HHHHHHHhcchhhHhhhhhccCCCchhhhhHHHHHHHHHhhChhHHHHHHHhhHHHHHHHHhHhhccCCCce
Q 023043 148 LRECIRH-QSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYI 226 (288)
Q Consensus 148 LRecik~-e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefl~~nyd~Ff~~yn~~Ll~s~NYV 226 (288)
|+-+..+ +.....+.....+-.+.+++..++-.|-.-|..++..+.+ ++.....|.. +.+ -.... -+|+.+++.-
T Consensus 605 L~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~-~~~~~~~~v~-~~g-~l~~L-v~LL~s~d~~ 680 (810)
T 3now_A 605 LTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVM-SEDVIKMFEG-NND-RVKFL-ALLCEDEDEE 680 (810)
T ss_dssp HHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTT-SHHHHHHHHS-SSS-HHHHH-HHGGGCSSHH
T ss_pred HHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhC-ChHHHHHHHh-ccC-cHHHH-HHHhcCCCHH
Confidence 4444444 5666677777777888888888899999999999988765 7777777773 222 23344 2789999999
Q ss_pred ehhchhhHHHHHhc-cCCchHHHHHhcCChhhHHHHHHHhhCCCCCccccccee
Q 023043 227 TRRQAVKLLGDILL-DRSNSVVMTRYVSSRENLRILMNLLRQEYPDRSISCFQA 279 (288)
Q Consensus 227 TkRQSLKLLgelLl-dr~N~~vM~rYi~~~~NLKl~M~LL~d~sknIQ~EAFhV 279 (288)
+++.+.-.|+.|-. ++.+ -..-+.+..-+..+..||++++..+|-+|--.
T Consensus 681 vq~~Aa~ALanLt~~s~~~---~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~a 731 (810)
T 3now_A 681 TATACAGALAIITSVSVKC---CEKILAIASWLDILHTLIANPSPAVQHRGIVI 731 (810)
T ss_dssp HHHHHHHHHHHHHHHCHHH---HHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHH---HHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHH
Confidence 99999999999986 3332 22233337788899999999999998887543
No 34
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=75.81 E-value=63 Score=31.68 Aligned_cols=182 Identities=14% Similarity=0.187 Sum_probs=108.1
Q ss_pred hHHHHHhhCCCCChhhhhhHHHHHHHHhhhcccCccchhhHhhcCHhHHHHHHHhcc--CchhhhhHHHHHHHHHHHHH-
Q 023043 80 TLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYE--NTDMALHYGAMLRECIRHQS- 156 (288)
Q Consensus 80 ll~~Li~~l~~L~fE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~peil~~L~~gY~--~~dial~~G~mLRecik~e~- 156 (288)
++..|...+..-+.+.|+.+..++..+.....+. ...|+. ++++..++.+-+ ++++...+-..+..+++...
T Consensus 225 ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~---~~~~l~--~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~ 299 (861)
T 2bpt_A 225 LMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTF---MKPYME--QALYALTIATMKSPNDKVASMTVEFWSTICEEEID 299 (861)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGG---CHHHHH--HTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH---HHHHHH--HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHh
Confidence 4555555566668888998888888887644211 122332 267777766655 35666666666766666532
Q ss_pred -----------------HHHHHhcchhhHhhhhhccC-------CCchhhhhHHHHHHHHHhhChhHHHHHHHhhHHHHH
Q 023043 157 -----------------VARYVLESQHMKKFFDYIQL-------PNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFF 212 (288)
Q Consensus 157 -----------------la~~iL~~~~f~~fF~yv~~-------~~FdiasDAf~TfkelLt~Hk~lvaefl~~nyd~Ff 212 (288)
..+..+ .+.+..++..+.- ..+.+...|..++..+-..-. ..-...+.
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~-~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~-------~~~~~~l~ 371 (861)
T 2bpt_A 300 IAYELAQFPQSPLQSYNFALSSI-KDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCG-------NHILEPVL 371 (861)
T ss_dssp HHHHHHHCTTCSCCCCCHHHHHH-HHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHG-------GGGHHHHH
T ss_pred hhhhhhhccCCchhhHHHHHHHH-HHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHcc-------HhHHHHHH
Confidence 111111 2233344444432 346676667777766544322 12234455
Q ss_pred HHHhHhhccCCCceehhchhhHHHHHhccCCchHHHHHhcCChhhHHHHHHHhhCCCCCcccccce
Q 023043 213 AEYNSKLLESSNYITRRQAVKLLGDILLDRSNSVVMTRYVSSRENLRILMNLLRQEYPDRSISCFQ 278 (288)
Q Consensus 213 ~~yn~~Ll~s~NYVTkRQSLKLLgelLldr~N~~vM~rYi~~~~NLKl~M~LL~d~sknIQ~EAFh 278 (288)
.... .++.+++.-.|..++..||.+.-.- ....+..|+. .=+..+...|+|++..++-.|..
T Consensus 372 ~~l~-~~l~~~~~~~r~~a~~~l~~i~~~~-~~~~~~~~l~--~il~~l~~~l~d~~~~vr~~a~~ 433 (861)
T 2bpt_A 372 EFVE-QNITADNWRNREAAVMAFGSIMDGP-DKVQRTYYVH--QALPSILNLMNDQSLQVKETTAW 433 (861)
T ss_dssp HHHH-HHTTCSSHHHHHHHHHHHHHTSSSS-CHHHHHHHHH--HHHHHHHHGGGCSCHHHHHHHHH
T ss_pred HHHH-HHcCCCChhHHHHHHHHHHHHHcCC-CHHHHHHHHH--HHHHHHHHHcCCCcHHHHHHHHH
Confidence 5664 7788999999999999999998321 1244455553 34566677788888777765543
No 35
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=75.48 E-value=60 Score=32.85 Aligned_cols=160 Identities=16% Similarity=0.111 Sum_probs=106.6
Q ss_pred HHHhhchHHHHHhhCCCCC-hhhhhhHHHHHHHHhhhcccCccchhhHhhc-C--HhHHHHHHHhc--------------
Q 023043 74 EFFRENTLRLLITCLPKLN-LEARKDATQVVANLQRQQVHSKLIASDYLEA-N--IDLLDILIAGY-------------- 135 (288)
Q Consensus 74 ei~~~dll~~Li~~l~~L~-fE~RKdv~~If~~llr~~~~~r~p~v~Yl~~-~--peil~~L~~gY-------------- 135 (288)
.+...+.+..|+..|..=+ .+.|+.++.+..++.+... ....+.. . |.++..|-.+.
T Consensus 483 ~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~-----~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq 557 (780)
T 2z6g_A 483 AVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA-----NHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQ 557 (780)
T ss_dssp HHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHH-----HHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------
T ss_pred HHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHH-----HHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccc
Confidence 4455677888888887655 4788999888888875221 1122222 1 44444443322
Q ss_pred ------cCchhhhhHHHHHHHHHHHHHHHHHHhcchhhHhhhhhccCCCchhhhhHHHHHHHHHhhChhHHHHHHHhhHH
Q 023043 136 ------ENTDMALHYGAMLRECIRHQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYD 209 (288)
Q Consensus 136 ------~~~dial~~G~mLRecik~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefl~~nyd 209 (288)
...++...+...|+.+.+++.....+.....+..+.+.+..++-+|..-|...+..+. .++.....+....
T Consensus 558 ~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~-~~~~~~~~i~~~g-- 634 (780)
T 2z6g_A 558 QFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA-QDKEAAEAIEAEG-- 634 (780)
T ss_dssp CCSTTCCHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHH-TSHHHHHHHHHTT--
T ss_pred hhhcccChHHHHHHHHHHHHHHhcChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHh-cCHHHHHHHHHCC--
Confidence 1234444555667777777766666667778888889999999999888888888775 4454443333322
Q ss_pred HHHHHHhHhhccCCCceehhchhhHHHHHhccCC
Q 023043 210 WFFAEYNSKLLESSNYITRRQAVKLLGDILLDRS 243 (288)
Q Consensus 210 ~Ff~~yn~~Ll~s~NYVTkRQSLKLLgelLldr~ 243 (288)
..... ..|+.++|--.|+.++..|+.+.-++.
T Consensus 635 -~i~~L-~~Ll~~~~~~Vr~~A~~aL~~l~~~~~ 666 (780)
T 2z6g_A 635 -ATAPL-TELLHSRNEGVATYAAAVLFRMSEDKP 666 (780)
T ss_dssp -CHHHH-HHGGGCSCHHHHHHHHHHHHHHHTTSC
T ss_pred -CHHHH-HHHHcCCCHHHHHHHHHHHHHHHcCCh
Confidence 22334 378999999999999999999998886
No 36
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=74.84 E-value=64 Score=31.33 Aligned_cols=178 Identities=17% Similarity=0.133 Sum_probs=116.0
Q ss_pred HHhhchHHHHHhhCCCCC-hhhhhhHHHHHHHHhhhcccCccchhhHhhc-C--HhHHHHHHHhc---------------
Q 023043 75 FFRENTLRLLITCLPKLN-LEARKDATQVVANLQRQQVHSKLIASDYLEA-N--IDLLDILIAGY--------------- 135 (288)
Q Consensus 75 i~~~dll~~Li~~l~~L~-fE~RKdv~~If~~llr~~~~~r~p~v~Yl~~-~--peil~~L~~gY--------------- 135 (288)
+...+.+..|+..|..=. .+.|+.++.+..++..... ....+.. . |.++..|-.+.
T Consensus 348 v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~-----~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~ 422 (644)
T 2z6h_A 348 VRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA-----NHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQ 422 (644)
T ss_dssp HHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGG-----GHHHHHHTTHHHHHHHHHHHHHHHHTTC---------
T ss_pred HHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHH-----HHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccch
Confidence 455677888888887653 6789999988888875221 1122222 1 33444443321
Q ss_pred -----cCchhhhhHHHHHHHHHHHHHHHHHHhcchhhHhhhhhccCCCchhhhhHHHHHHHHHhhChhHHHHHHHhhHHH
Q 023043 136 -----ENTDMALHYGAMLRECIRHQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDW 210 (288)
Q Consensus 136 -----~~~dial~~G~mLRecik~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefl~~nyd~ 210 (288)
...++...+-..|+.+.+++.....+.....+..+.+++..++-+|..-|...+..+. .++.....+....
T Consensus 423 ~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~-~~~~~~~~i~~~g--- 498 (644)
T 2z6h_A 423 FVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA-QDKEAAEAIEAEG--- 498 (644)
T ss_dssp -CCSSCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHH-TSHHHHHHHHHTT---
T ss_pred hcccccHHHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHH-cCHHHHHHHHHcC---
Confidence 2344555666777888888876666667778888889999999999888888888854 4555443333322
Q ss_pred HHHHHhHhhccCCCceehhchhhHHHHHhccCCchHHHHHhcCChhhHHHHHHHhhCC
Q 023043 211 FFAEYNSKLLESSNYITRRQAVKLLGDILLDRSNSVVMTRYVSSRENLRILMNLLRQE 268 (288)
Q Consensus 211 Ff~~yn~~Ll~s~NYVTkRQSLKLLgelLldr~N~~vM~rYi~~~~NLKl~M~LL~d~ 268 (288)
-.... ..|+.++|--++..+...|+.+.-++. .....+. -+.++..++++.
T Consensus 499 ~l~~L-~~ll~~~~~~vr~~A~~aL~~l~~~~~-~~~~~~~-----~~~il~~~~~~~ 549 (644)
T 2z6h_A 499 ATAPL-TELLHSRNEGVATYAAAVLFRMSEDKP-QDYKKRL-----SVELTSSLFRTE 549 (644)
T ss_dssp CHHHH-HHHTTCSCHHHHHHHHHHHHHHTTTSC-HHHHHHH-----HHHHHHHHSCCS
T ss_pred ChhHH-HHHHcCCCHHHHHHHHHHHHHHhccCc-Hhhhccc-----chHHHHHHHhCC
Confidence 23344 378999999999999999999987774 2222221 255666666544
No 37
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=73.91 E-value=19 Score=32.58 Aligned_cols=131 Identities=11% Similarity=0.122 Sum_probs=91.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhcchhhHhhhh-hccCCCchhhhhHHHHHHHHHhhChhHHHHHHHhhHHHHHHHHhHh
Q 023043 140 MALHYGAMLRECIRHQSVARYVLESQHMKKFFD-YIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSK 218 (288)
Q Consensus 140 ial~~G~mLRecik~e~la~~iL~~~~f~~fF~-yv~~~~FdiasDAf~TfkelLt~Hk~lvaefl~~nyd~Ff~~yn~~ 218 (288)
--..+-..|.+++.....+..+.....+-.++. .+..++=+|-..|..++-.+-+..+..-..++..+ -.... -.
T Consensus 56 ~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g---~l~~L-l~ 131 (296)
T 1xqr_A 56 EREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLG---ALRKL-LR 131 (296)
T ss_dssp HHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTT---HHHHH-HH
T ss_pred HHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCC---CHHHH-HH
Confidence 344455566666665556665655566667777 88889999999999999998887765554555444 22333 25
Q ss_pred hccC-CCceehhchhhHHHHHhccCCchHHHHHhcCChhhHHHHHHHhhCCCCCcccccc
Q 023043 219 LLES-SNYITRRQAVKLLGDILLDRSNSVVMTRYVSSRENLRILMNLLRQEYPDRSISCF 277 (288)
Q Consensus 219 Ll~s-~NYVTkRQSLKLLgelLldr~N~~vM~rYi~~~~NLKl~M~LL~d~sknIQ~EAF 277 (288)
||.+ ++=-.++.++--|+.|. |.|-.....++. ..-+..+..+|++++..+|-+|-
T Consensus 132 LL~~~~~~~v~~~A~~ALsnl~--~~~~~~~~~~~~-~ggi~~L~~lL~~~d~~v~~~A~ 188 (296)
T 1xqr_A 132 LLDRDACDTVRVKALFAISCLV--REQEAGLLQFLR-LDGFSVLMRAMQQQVQKLKVKSA 188 (296)
T ss_dssp HHHHCSCHHHHHHHHHHHHHHH--TTCHHHHHHHHH-TTHHHHHHHHHHSSCHHHHHHHH
T ss_pred HHccCCCHHHHHHHHHHHHHHH--cCCcHHHHHHHH-CCCHHHHHHHHcCCCHHHHHHHH
Confidence 7775 46567899999999988 445444444554 34688999999999888888764
No 38
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=70.34 E-value=12 Score=35.22 Aligned_cols=52 Identities=17% Similarity=0.167 Sum_probs=43.3
Q ss_pred hchHHHHHhhCCCCChhhhhhHHHHHHHHhhhcccCccchhhHhhc-CHhHHHHHHHh
Q 023043 78 ENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEA-NIDLLDILIAG 134 (288)
Q Consensus 78 ~dll~~Li~~l~~L~fE~RKdv~~If~~llr~~~~~r~p~v~Yl~~-~peil~~L~~g 134 (288)
.++|..|+ +...+|.+.|.-++.|.+.+|| +.+|+++++.+ +|..+..++..
T Consensus 70 f~lL~nL~-~~~~~~~~~rE~aarII~ssLR----NNP~Al~~V~~~~p~fv~~lf~~ 122 (315)
T 3qml_C 70 FALLANLS-LNENLPLTLRELSTRVITSCLR----NNPPVVEFINESFPNFKSKIMAA 122 (315)
T ss_dssp HHHHHHHH-HCTTSCHHHHHHHHHHHHHHHT----TCHHHHHHHHHHCTTHHHHHHHH
T ss_pred HHHHHHHH-hhccCChhHHHHHHHHHHHHHc----cCHHHHHHHHHhChhHHHHHHHH
Confidence 35777777 5555999999999999999999 55688999988 89999999854
No 39
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=67.36 E-value=69 Score=28.56 Aligned_cols=185 Identities=12% Similarity=0.091 Sum_probs=106.9
Q ss_pred HHHHHhhCCCCChhhhhhHHHHHHHHhhhcccCccchhhHhhcCHhHHHHHHHhc--cCchhhhhHHHHHHHHHHHHHHH
Q 023043 81 LRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGY--ENTDMALHYGAMLRECIRHQSVA 158 (288)
Q Consensus 81 l~~Li~~l~~L~fE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~peil~~L~~gY--~~~dial~~G~mLRecik~e~la 158 (288)
+..+...+..-+.+.|+.+..++..+.....+. ...|+.. +++..++.+- .++++...+-..+..+.+.+.-.
T Consensus 219 ~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~---~~~~~~~--~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~ 293 (462)
T 1ibr_B 219 MQVVCEATQCPDTRVRVAALQNLVKIMSLYYQY---METYMGP--ALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDL 293 (462)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGG---CTTTTTT--THHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH---HHHHHHH--HHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHH
Confidence 555555666778899999999999888754211 0123221 5666665443 34566665555555555543100
Q ss_pred HHHhc----------------------chhhHhhhhhcc-------CCCchhhhhHHHHHHHHHhhChhHHHHHHHhhHH
Q 023043 159 RYVLE----------------------SQHMKKFFDYIQ-------LPNFDIAADAAATFKELLTRHKSTVAEFLSKNYD 209 (288)
Q Consensus 159 ~~iL~----------------------~~~f~~fF~yv~-------~~~FdiasDAf~TfkelLt~Hk~lvaefl~~nyd 209 (288)
..+. ...+-.+++.+. -....+...|..++..+-..-.+- -..
T Consensus 294 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~-------~~~ 365 (462)
T 1ibr_B 294 -AIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDD-------IVP 365 (462)
T ss_dssp -HHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTT-------HHH
T ss_pred -HHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHH-------HHH
Confidence 0000 111122223332 123345555555555544432211 122
Q ss_pred HHHHHHhHhhccCCCceehhchhhHHHHHhccCCchHHHHHhcCChhhHHHHHHHhhCCCCCcccccceeeee
Q 023043 210 WFFAEYNSKLLESSNYITRRQAVKLLGDILLDRSNSVVMTRYVSSRENLRILMNLLRQEYPDRSISCFQAVCC 282 (288)
Q Consensus 210 ~Ff~~yn~~Ll~s~NYVTkRQSLKLLgelLldr~N~~vM~rYi~~~~NLKl~M~LL~d~sknIQ~EAFhVf~~ 282 (288)
.+..... ..+.++++-.|.-++..||.+.-.-. -..+..++ ++-+..+..+|.|+...++..|.....-
T Consensus 366 ~~~~~l~-~~l~~~~~~~r~aal~~l~~l~~~~~-~~~~~~~l--~~~~~~l~~~l~d~~~~Vr~~a~~~l~~ 434 (462)
T 1ibr_B 366 HVLPFIK-EHIKNPDWRYRDAAVMAFGCILEGPE-PSQLKPLV--IQAMPTLIELMKDPSVVVRDTAAWTVGR 434 (462)
T ss_dssp HHHHHHH-HHTTCSSHHHHHHHHHHHHHTSSSSC-TTTTCTTT--TTHHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHhcCCChHHHHHHHHHHHHHhcCCc-HHHHHHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 3455554 78889999999999999999985321 12333444 5678889999999999999888776543
No 40
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=67.24 E-value=35 Score=28.62 Aligned_cols=150 Identities=12% Similarity=0.148 Sum_probs=105.2
Q ss_pred CCChhhhhhHHHHHHHHhhhcccCccchhhHhhc-CHhHHHHHHHhccCc--hhhhhHHHHHHHHHHHHHHHHHHhcchh
Q 023043 90 KLNLEARKDATQVVANLQRQQVHSKLIASDYLEA-NIDLLDILIAGYENT--DMALHYGAMLRECIRHQSVARYVLESQH 166 (288)
Q Consensus 90 ~L~fE~RKdv~~If~~llr~~~~~r~p~v~Yl~~-~peil~~L~~gY~~~--dial~~G~mLRecik~e~la~~iL~~~~ 166 (288)
.-+...|+.+...+..+.+.- +. .+.. .+.++..|+....++ .+--.+..-|+.|+..-.+ ++.
T Consensus 68 d~~~~V~~~a~~~l~~la~~l-~~------~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~------~~l 134 (242)
T 2qk2_A 68 DSNVVLVAMAGKCLALLAKGL-AK------RFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL------EAQ 134 (242)
T ss_dssp CSCHHHHHHHHHHHHHHHHHH-GG------GGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH------HHH
T ss_pred CCCHHHHHHHHHHHHHHHHHH-hh------hHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH------HHH
Confidence 556778888888888887532 21 1222 477888898888764 4556677777777764332 123
Q ss_pred hHhhhhhccCCCchhhhhHHHHHHHHHhhCh-h-HHHHHHHhhHHHHHHHHhHhhccCCCceehhchhhHHHHHhccCCc
Q 023043 167 MKKFFDYIQLPNFDIAADAAATFKELLTRHK-S-TVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLLGDILLDRSN 244 (288)
Q Consensus 167 f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk-~-lvaefl~~nyd~Ff~~yn~~Ll~s~NYVTkRQSLKLLgelLldr~N 244 (288)
+..+..+++..+-.+-..+...+..++.+|. . ....+ +..+....- .++..+++-.|..+...||.+..-=.
T Consensus 135 l~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~----l~~l~p~l~-~~l~D~~~~VR~~A~~~l~~l~~~vg- 208 (242)
T 2qk2_A 135 QESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKL----LKLLTTSLV-KTLNEPDPTVRDSSAEALGTLIKLMG- 208 (242)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHH----HHHHHHHHH-HHHTSSCHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHH----HHHHHHHHH-HHhcCCChHHHHHHHHHHHHHHHHcC-
Confidence 4456677888899999999999999999884 2 23333 456666663 88999999999999999999874332
Q ss_pred hHHHHHhcCChhhH
Q 023043 245 SVVMTRYVSSRENL 258 (288)
Q Consensus 245 ~~vM~rYi~~~~NL 258 (288)
...+..|+.+-+..
T Consensus 209 ~~~~~~~l~~L~~~ 222 (242)
T 2qk2_A 209 DKAVTPLLADVDPL 222 (242)
T ss_dssp HHHHGGGGTTSCHH
T ss_pred HHHHHHHHHhcCHH
Confidence 35677888765443
No 41
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=66.17 E-value=1.2e+02 Score=30.98 Aligned_cols=151 Identities=16% Similarity=0.256 Sum_probs=94.8
Q ss_pred HHHHHHHhhhccCCCCCC------c-HHHHHHHHHHHH-hhchHHHHHhhCCCCChhhhhhHHHHHHHHhhhcccCccch
Q 023043 46 KNIRELKSILYGNSESEP------V-SEACAQLTAEFF-RENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIA 117 (288)
Q Consensus 46 K~L~~mK~il~G~~e~~p------~-~e~~~qLa~ei~-~~dll~~Li~~l~~L~fE~RKdv~~If~~llr~~~~~r~p~ 117 (288)
-.|.-+-.++.++++.+. + .+...+++.++. +.+-+..|+..|..=+|..|--+.++...|+..+... +
T Consensus 81 ~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~---~ 157 (651)
T 3grl_A 81 YALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQ---V 157 (651)
T ss_dssp HHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHH---H
T ss_pred HHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHH---H
Confidence 334445556665554221 1 223456777764 4478999999999999999999999999999744321 3
Q ss_pred hhHhhcCHhHHHHHHHhccCc-hhhhhHHH-HHHHHHH-HHHHHHHHhcchhhHhhhhhccCCCc----hhhhhHHHHHH
Q 023043 118 SDYLEANIDLLDILIAGYENT-DMALHYGA-MLRECIR-HQSVARYVLESQHMKKFFDYIQLPNF----DIAADAAATFK 190 (288)
Q Consensus 118 v~Yl~~~peil~~L~~gY~~~-dial~~G~-mLRecik-~e~la~~iL~~~~f~~fF~yv~~~~F----diasDAf~Tfk 190 (288)
=+++.+.|.-+..|+.--+++ |+-=+-+. +|-+..+ +..+-+++=.-.-|.++|+-++...- .|..|++..+.
T Consensus 158 Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~ 237 (651)
T 3grl_A 158 QQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQ 237 (651)
T ss_dssp HHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHH
T ss_pred HHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHH
Confidence 457888899999998877654 22211111 1222222 23334444343468888887765555 78889999999
Q ss_pred HHHhhChhH
Q 023043 191 ELLTRHKST 199 (288)
Q Consensus 191 elLt~Hk~l 199 (288)
.||..+.+-
T Consensus 238 nLLr~N~sN 246 (651)
T 3grl_A 238 NLLKNNNSN 246 (651)
T ss_dssp HHHTTCHHH
T ss_pred HHHhcCHHH
Confidence 988776533
No 42
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=65.50 E-value=27 Score=34.38 Aligned_cols=101 Identities=15% Similarity=0.166 Sum_probs=58.9
Q ss_pred hhhccCCCc-hhhhhHHHHHHHHHhhChhHHHHHHHhhHHHHHHHHhHhhccCCCceehhchhhHHHHHhccCCchHHHH
Q 023043 171 FDYIQLPNF-DIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLLGDILLDRSNSVVMT 249 (288)
Q Consensus 171 F~yv~~~~F-diasDAf~TfkelLt~Hk~lvaefl~~nyd~Ff~~yn~~Ll~s~NYVTkRQSLKLLgelLldr~N~~vM~ 249 (288)
...++.++- .+-.+++..+..+......-...|+ +.++...- ..+.++++-+|+.++.++|++... .-.-+.
T Consensus 603 ~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l----~~i~~~l~-~~l~~~~~~vr~~a~~~l~~l~~~--~~~~~~ 675 (861)
T 2bpt_A 603 FRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYL----ETFSPYLL-KALNQVDSPVSITAVGFIADISNS--LEEDFR 675 (861)
T ss_dssp HHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHH----HHHHHHHH-HHHHCTTSHHHHHHHHHHHHHHHH--TGGGGH
T ss_pred HHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHH----HHHHHHHH-HHhccccHHHHHHHHHHHHHHHHH--hchhcc
Confidence 334444444 5666777666665544332223333 44555553 556788999999999999998732 222233
Q ss_pred HhcCChhhHHHHHHHhhCCC--CCcccccceee
Q 023043 250 RYVSSRENLRILMNLLRQEY--PDRSISCFQAV 280 (288)
Q Consensus 250 rYi~~~~NLKl~M~LL~d~s--knIQ~EAFhVf 280 (288)
.|+ +.-+..++..|.++. ..++-.|+..+
T Consensus 676 ~~~--~~l~~~l~~~l~~~~~~~~vr~~~~~~l 706 (861)
T 2bpt_A 676 RYS--DAMMNVLAQMISNPNARRELKPAVLSVF 706 (861)
T ss_dssp HHH--HHHHHHHHHHHHCTTCCTTHHHHHHHHH
T ss_pred chH--HHHHHHHHHHhCCccccHhhhHHHHHHH
Confidence 443 344556667777764 55665555544
No 43
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=63.84 E-value=18 Score=33.62 Aligned_cols=100 Identities=9% Similarity=0.115 Sum_probs=67.1
Q ss_pred hhhhhccCCCchhhhhHHHHHHHHHhhChhHHHHHHHhhHHHHHHHHhHhhccCCCceehhchhhHHHHHhccCCchHHH
Q 023043 169 KFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLLGDILLDRSNSVVM 248 (288)
Q Consensus 169 ~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefl~~nyd~Ff~~yn~~Ll~s~NYVTkRQSLKLLgelLldr~N~~vM 248 (288)
.++.+++.++-+|-..|..++..+...... ++. .+.+..... .++.++||-+|..++..+|.+.-.=. ..
T Consensus 445 ~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~---~~~---~~~llp~l~-~~~~~~~~~~R~~a~~~l~~l~~~~~-~~-- 514 (588)
T 1b3u_A 445 LCMAWLVDHVYAIREAATSNLKKLVEKFGK---EWA---HATIIPKVL-AMSGDPNYLHRMTTLFCINVLSEVCG-QD-- 514 (588)
T ss_dssp HHHHGGGCSSHHHHHHHHHHHHHHHHHHCH---HHH---HHHTHHHHH-HTTTCSCHHHHHHHHHHHHHHHHHHH-HH--
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHHHhCc---hhH---HHHHHHHHH-HHhhCCCHHHHHHHHHHHHHHHHhcC-HH--
Confidence 344567778888888888888887765332 221 345555664 67889999999999999998863100 00
Q ss_pred HHhcCChhhHHHHHHHhhCCCCCcccccceeee
Q 023043 249 TRYVSSRENLRILMNLLRQEYPDRSISCFQAVC 281 (288)
Q Consensus 249 ~rYi~~~~NLKl~M~LL~d~sknIQ~EAFhVf~ 281 (288)
.|. +.-+..++.+|+|+..+++..|...+.
T Consensus 515 -~~~--~~~~~~l~~~l~d~~~~Vr~~a~~~l~ 544 (588)
T 1b3u_A 515 -ITT--KHMLPTVLRMAGDPVANVRFNVAKSLQ 544 (588)
T ss_dssp -HHH--HHTHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred -HHH--HHHHHHHHhhCCCCCchHHHHHHHHHH
Confidence 011 345667778888888888877765544
No 44
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=63.53 E-value=74 Score=29.86 Aligned_cols=103 Identities=13% Similarity=0.203 Sum_probs=58.9
Q ss_pred CCCChHHHHHHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHHHHHhhhccCCCCCCcHHHHHHHHHHHHhhc--hHHHHH
Q 023043 8 KPRTPVDIVRQTRDLIIYANRSADVRESKREDKMAELCKNIRELKSILYGNSESEPVSEACAQLTAEFFREN--TLRLLI 85 (288)
Q Consensus 8 ~~k~P~elVr~l~e~l~~L~~~~~~~~~K~~~k~eei~K~L~~mK~il~G~~e~~p~~e~~~qLa~ei~~~d--ll~~Li 85 (288)
+.++|+++|+.+++.. .+ +.+.+.|..++..|-. .|. ...+++...+ .|..++
T Consensus 64 ~~~sP~~yi~~L~~~~---------~~-------~kl~~~L~sL~v~Lrt----~~~-----sWV~~F~~~Gl~~Ll~iL 118 (383)
T 3eg5_B 64 SSRSAMMYIQELRSGL---------RD-------MHLLSCLESLRVSLTS----HPV-----SWVQTFGAEGLASLLDIL 118 (383)
T ss_dssp -CCCHHHHHHHHTTTC---------CH-------HHHHHHHHHHHHHHHH----SCH-----HHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHhcc---------cc-------hhHHHHHHHHHHHHhh----Ccc-----HHHHHHHHccHHHHHHHH
Confidence 3578999998886421 11 2455677777777752 222 2334444333 233333
Q ss_pred hhCC--------CCChhhhhhHHHHHHHHhhhcccCccchhhHhhcCHhHHHHHHHhccCchh
Q 023043 86 TCLP--------KLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYENTDM 140 (288)
Q Consensus 86 ~~l~--------~L~fE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~peil~~L~~gY~~~di 140 (288)
..+. .-|.+-.-.+..++..++..+. ..+++..||+.+..|..+-+.+..
T Consensus 119 ~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~-----G~~~vl~~~~~i~~l~~~L~s~~~ 176 (383)
T 3eg5_B 119 KRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKF-----GIKTMLETEEGILLLVRAMDPAVP 176 (383)
T ss_dssp HHHHTCC-------CHHHHHHHHHHHHHHTSSHH-----HHHHHHTCSSHHHHHHHTCCTTSH
T ss_pred HHHhhccccccchhhHHHHHHHHHHHHHHhcchh-----hHHHHHcChHHHHHHHHHhCCCch
Confidence 3321 2233333455666666666554 478899999999999888765544
No 45
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=63.47 E-value=96 Score=29.28 Aligned_cols=140 Identities=14% Similarity=0.231 Sum_probs=103.0
Q ss_pred HHHHHHHhhchHHHHHhhCCCCChhhhhhHHHHHHHHhhhcccCccchhhHhhcCHhHHHHHHHhccCch-------hhh
Q 023043 70 QLTAEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYENTD-------MAL 142 (288)
Q Consensus 70 qLa~ei~~~dll~~Li~~l~~L~fE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~peil~~L~~gY~~~d-------ial 142 (288)
.+|.-+..++.+..+...+..=.||.--|+-..|.-++-+.. ..+.+||.+|-|.++....+-=..+ .-=
T Consensus 155 ~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk---~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlK 231 (341)
T 1upk_A 155 PLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHK---LLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLK 231 (341)
T ss_dssp HHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSH---HHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccH---HHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHH
Confidence 344445555566677788888899999999999999997533 3567999999877665544332222 222
Q ss_pred hHHHHHHHHHHHHHHHHHHhcchhhHhhhhhccCCCchhhhhHHHHHHHHHhh-Ch-hHHHHHHHhhHHHHH
Q 023043 143 HYGAMLRECIRHQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTR-HK-STVAEFLSKNYDWFF 212 (288)
Q Consensus 143 ~~G~mLRecik~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~-Hk-~lvaefl~~nyd~Ff 212 (288)
..|.+|-+=.-+..+.+||-..+.+.-+...+..++=-|.-+||..||-...+ || +-|...|..|=++..
T Consensus 232 LLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~~~I~~IL~~Nr~kLl 303 (341)
T 1upk_A 232 LLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKLI 303 (341)
T ss_dssp HHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTHHHHH
T ss_pred HHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCChHHHHHHHHHHHHHH
Confidence 35677777666788888888888888888888999999999999999976654 33 677799998877643
No 46
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=60.73 E-value=72 Score=29.96 Aligned_cols=172 Identities=13% Similarity=0.214 Sum_probs=86.4
Q ss_pred CCCChHHHHHHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHHHHHhhhccCCCCCCcHHHHHHHHHHHHhhchHHHHHhh
Q 023043 8 KPRTPVDIVRQTRDLIIYANRSADVRESKREDKMAELCKNIRELKSILYGNSESEPVSEACAQLTAEFFRENTLRLLITC 87 (288)
Q Consensus 8 ~~k~P~elVr~l~e~l~~L~~~~~~~~~K~~~k~eei~K~L~~mK~il~G~~e~~p~~e~~~qLa~ei~~~dll~~Li~~ 87 (288)
++.+|..+|+.+++.. . + +.+.+.|..++..|-.. |. .-++++...+ +..|+..
T Consensus 2 ~~~~P~~yv~~L~~~~---------~-~------~~~~~~L~~L~v~Lrt~----~~-----~Wv~~F~~~G-l~~Ll~~ 55 (386)
T 2bnx_A 2 SSRSAMMYIQELRSGL---------R-D------MHLLSCLESLRVSLNNN----PV-----SWVQTFGAEG-LASLLDI 55 (386)
T ss_dssp -CCCHHHHHHHHTSCC---------C-H------HHHHHHHHHHHHHHHHS----CH-----HHHHHHHHHH-HHHHHHH
T ss_pred CCCCHHHHHHHHHhcc---------c-h------HHHHHHHHHHhHHHhcC----Cc-----HHHHHHHHhH-HHHHHHH
Confidence 5789999999987521 1 0 23567777777777633 21 2333333332 2222222
Q ss_pred CCCC-----------ChhhhhhHHHHHHHHhhhcccCccchhhHhhcCHhHHHHHHHhccCchhhhhH------------
Q 023043 88 LPKL-----------NLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYENTDMALHY------------ 144 (288)
Q Consensus 88 l~~L-----------~fE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~peil~~L~~gY~~~dial~~------------ 144 (288)
|..+ +.+-.-.+..++..++..+. ..+++..||+.+..|..+-+.+....-+
T Consensus 56 L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~-----Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~ 130 (386)
T 2bnx_A 56 LKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKF-----GIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCIL 130 (386)
T ss_dssp HHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHH-----HHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTC
T ss_pred HHHHHhcccccccchhHHHHHHHHHHHHHHhCCHH-----HHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcC
Confidence 2222 12222234445555554443 4777888888887777776544332111
Q ss_pred ----H--HHHHHHHHHHHHHHHHhcchhhHhhhhhcc-CCCchhhhhHHHHHHHHHhhCh------hHHHHHHHhhHHHH
Q 023043 145 ----G--AMLRECIRHQSVARYVLESQHMKKFFDYIQ-LPNFDIAADAAATFKELLTRHK------STVAEFLSKNYDWF 211 (288)
Q Consensus 145 ----G--~mLRecik~e~la~~iL~~~~f~~fF~yv~-~~~FdiasDAf~TfkelLt~Hk------~lvaefl~~nyd~F 211 (288)
| ..+-+.+.+-. . .=+...||.+.+.+. ..+-|..+-++.-+..++..-+ .+-+||.....++.
T Consensus 131 ~~~~G~~~~VL~Al~~~~--~-~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~~i 207 (386)
T 2bnx_A 131 PQPEDMNERVLEAMTERA--E-MDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQV 207 (386)
T ss_dssp CSSTTHHHHHHHHHHHHH--H-HHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHH
T ss_pred CCCCChHHHHHHHHHHHH--H-hCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHH
Confidence 1 11222222211 1 113346777777765 4444555556665666555433 35556666555554
Q ss_pred HH
Q 023043 212 FA 213 (288)
Q Consensus 212 f~ 213 (288)
++
T Consensus 208 l~ 209 (386)
T 2bnx_A 208 LQ 209 (386)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 47
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=58.97 E-value=67 Score=25.60 Aligned_cols=146 Identities=14% Similarity=0.166 Sum_probs=88.6
Q ss_pred hchHHHHHhhCCCCChhhhhhHHHHHHHHhhhcccCccchhhHhhcCHhHHHHHHHhccCchhhhhHHHHHHHHHHHHHH
Q 023043 78 ENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYENTDMALHYGAMLRECIRHQSV 157 (288)
Q Consensus 78 ~dll~~Li~~l~~L~fE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~peil~~L~~gY~~~dial~~G~mLRecik~e~l 157 (288)
...+..|+..|..=+.+.|..+......+ ..|+.+..|+...++++-..-.. ++ +.|
T Consensus 44 ~~~~~~L~~~l~~~~~~vr~~a~~~L~~~----------------~~~~~~~~L~~~l~d~~~~vr~~-----a~--~aL 100 (201)
T 3ltj_A 44 ERAVEPLIKALKDEDAWVRRAAADALGQI----------------GDERAVEPLIKALKDEDGWVRQS-----AA--VAL 100 (201)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHH----------------CCGGGHHHHHHHTTCSSHHHHHH-----HH--HHH
T ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHhh----------------CCHHHHHHHHHHHcCCCHHHHHH-----HH--HHH
Confidence 35677777777666666666554443322 13566666766666655321110 11 112
Q ss_pred HHHHhcch-hhHhhhhhccCCCchhhhhHHHHHHHHHhhChhHHHHHHHhhHHHHHHHHhHhhccCCCceehhchhhHHH
Q 023043 158 ARYVLESQ-HMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLLG 236 (288)
Q Consensus 158 a~~iL~~~-~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefl~~nyd~Ff~~yn~~Ll~s~NYVTkRQSLKLLg 236 (288)
.+ +.++ .+..+.+.+..++-+|-.-|...+..+= .+. ....+ ..++.+++.-+|+.++.-||
T Consensus 101 ~~--~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~--~~~------------~~~~L-~~~l~d~~~~vr~~A~~aL~ 163 (201)
T 3ltj_A 101 GQ--IGDERAVEPLIKALKDEDWFVRIAAAFALGEIG--DER------------AVEPL-IKALKDEDGWVRQSAADALG 163 (201)
T ss_dssp HH--HCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHT--CGG------------GHHHH-HHHTTCSSHHHHHHHHHHHH
T ss_pred HH--hCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC--CHH------------HHHHH-HHHHcCCCHHHHHHHHHHHH
Confidence 22 1233 4445556667777777666666665541 111 22334 26788889999999999999
Q ss_pred HHhccCCchHHHHHhcCChhhHHHHHHHhhCCCCCcccccc
Q 023043 237 DILLDRSNSVVMTRYVSSRENLRILMNLLRQEYPDRSISCF 277 (288)
Q Consensus 237 elLldr~N~~vM~rYi~~~~NLKl~M~LL~d~sknIQ~EAF 277 (288)
.+ .+++-+..+..+|.|++..++..|-
T Consensus 164 ~~--------------~~~~~~~~L~~~l~d~~~~vr~~A~ 190 (201)
T 3ltj_A 164 EI--------------GGERVRAAMEKLAETGTGFARKVAV 190 (201)
T ss_dssp HH--------------CSHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred Hh--------------CchhHHHHHHHHHhCCCHHHHHHHH
Confidence 87 5678888899999998887776654
No 48
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=58.08 E-value=31 Score=27.90 Aligned_cols=83 Identities=16% Similarity=0.155 Sum_probs=52.5
Q ss_pred hHhhhhhccCCCchhhhhHHHHHHHHHhhChhHHHHHHHhhHHHHHHHHhHhhccCCCceehhchhhHHHHHhccCCchH
Q 023043 167 MKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLLGDILLDRSNSV 246 (288)
Q Consensus 167 f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefl~~nyd~Ff~~yn~~Ll~s~NYVTkRQSLKLLgelLldr~N~~ 246 (288)
+..+.+.++.++-+|-.-|...+..+=. + ...... ..++.+++.-+|+.++..||.+
T Consensus 83 ~~~L~~~l~~~~~~vr~~a~~aL~~~~~--~------------~~~~~L-~~~l~d~~~~vr~~a~~aL~~~-------- 139 (211)
T 3ltm_A 83 VEPLIKALKDEDGWVRQSAAVALGQIGD--E------------RAVEPL-IKALKDEDWFVRIAAAFALGEI-------- 139 (211)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHCC--G------------GGHHHH-HHHTTCSSHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCc--H------------HHHHHH-HHHHhCCCHHHHHHHHHHHHHc--------
Confidence 3344445555555555555555544311 1 122333 2677888888888888888875
Q ss_pred HHHHhcCChhhHHHHHHHhhCCCCCcccccce
Q 023043 247 VMTRYVSSRENLRILMNLLRQEYPDRSISCFQ 278 (288)
Q Consensus 247 vM~rYi~~~~NLKl~M~LL~d~sknIQ~EAFh 278 (288)
.+++-+..+..+|.|++..++..|..
T Consensus 140 ------~~~~~~~~L~~~l~d~~~~vr~~a~~ 165 (211)
T 3ltm_A 140 ------GDERAVEPLIKALKDEDGWVRQSAAD 165 (211)
T ss_dssp ------CCGGGHHHHHHHTTCSSHHHHHHHHH
T ss_pred ------CCHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 34677888888999988888877654
No 49
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=57.70 E-value=92 Score=26.81 Aligned_cols=100 Identities=13% Similarity=0.200 Sum_probs=53.9
Q ss_pred ChHHHHHHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHHHHHhhhccCCCCCCcHHHHHHHHHHHHhhc--hHHHHHhhC
Q 023043 11 TPVDIVRQTRDLIIYANRSADVRESKREDKMAELCKNIRELKSILYGNSESEPVSEACAQLTAEFFREN--TLRLLITCL 88 (288)
Q Consensus 11 ~P~elVr~l~e~l~~L~~~~~~~~~K~~~k~eei~K~L~~mK~il~G~~e~~p~~e~~~qLa~ei~~~d--ll~~Li~~l 88 (288)
+|.++|+.+++.+ . + +.+.+.|..++..|-.. |. .-++++.+.+ .|..++..+
T Consensus 1 ~P~~yi~~L~~~~---------~-~------~~~~~~L~~L~v~Lrt~----~~-----~Wv~~F~~~Gl~~L~~~L~~~ 55 (233)
T 2f31_A 1 SAMMYIQELRSGL---------R-D------MHLLSCLESLRVSLNNN----PV-----SWVQTFGAEGLASLLDILKRL 55 (233)
T ss_dssp CHHHHHHHHTTTC---------C-H------HHHHHHHHHHHHHHHHS----CH-----HHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcc---------c-h------HHHHHHHHHHhHhHhcC----Cc-----HHHHHHHHhHHHHHHHHHHHH
Confidence 6889988887531 0 0 13566777777777532 21 2333332222 222333322
Q ss_pred CC--------CChhhhhhHHHHHHHHhhhcccCccchhhHhhcCHhHHHHHHHhccCchh
Q 023043 89 PK--------LNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYENTDM 140 (288)
Q Consensus 89 ~~--------L~fE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~peil~~L~~gY~~~di 140 (288)
.. .+.+-.-.+..++..++..+ +..+++.+||+.+..|..+-+.+..
T Consensus 56 ~~~~~~~~~~~~~~~~~~~l~CLkalmn~~-----~G~~~vl~~~~~i~~l~~~L~s~~~ 110 (233)
T 2f31_A 56 HDEKEETSGNYDSRNQHEIIRCLKAFMNNK-----FGIKTMLETEEGILLLVRAMDPAVP 110 (233)
T ss_dssp HTCC-----CCHHHHHHHHHHHHHHHTSSH-----HHHHHHHTSSSHHHHHHTTCCTTSH
T ss_pred HhcccccchhhhHHHHHHHHHHHHHHhCCh-----HHHHHHHcCcHHHHHHHHHhCCCCc
Confidence 11 12222234445555555444 4578888999999888888766554
No 50
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=55.46 E-value=77 Score=33.25 Aligned_cols=192 Identities=12% Similarity=0.148 Sum_probs=107.1
Q ss_pred hchHHHHHhhCCCCChhhhhhHHHHHHHHhhhcccCccchhhHhhcCHhHHHHHHHhcc-Cchhhh--------------
Q 023043 78 ENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYE-NTDMAL-------------- 142 (288)
Q Consensus 78 ~dll~~Li~~l~~L~fE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~peil~~L~~gY~-~~dial-------------- 142 (288)
.+++..++..+..-+-+.|.-+...+..+.+.-... ...|+ |+++..++.+.. +|+...
T Consensus 254 ~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~---~~~~l---~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~ 327 (1230)
T 1u6g_C 254 EKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKE---VYPHV---STIINICLKYLTYDPNYNYDDEDEDENAMDADG 327 (1230)
T ss_dssp TTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCC---CHHHH---HHHHHHHTTCCCCC-------------------
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHH---HHHhH---HHHHHHHHHHhCCCCCCCCcccccccccccccc
Confidence 567888888887777888888888888887743211 12243 556666655432 111000
Q ss_pred ----------hHH------HHHHHHHHHHHHHHHHhcch-h--------hHhhhhhccCCCchhhhhHHHHHHHHHhhCh
Q 023043 143 ----------HYG------AMLRECIRHQSVARYVLESQ-H--------MKKFFDYIQLPNFDIAADAAATFKELLTRHK 197 (288)
Q Consensus 143 ----------~~G------~mLRecik~e~la~~iL~~~-~--------f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk 197 (288)
.++ .-+|++.- +.+..+.-..+ . +-.+.+++.-++=+|-..|+.++..++..-.
T Consensus 328 ~~~~~~~~~~~~~~~~d~~~~vR~~A~-~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~ 406 (1230)
T 1u6g_C 328 GDDDDQGSDDEYSDDDDMSWKVRRAAA-KCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTR 406 (1230)
T ss_dssp -----------------CTTHHHHHHH-HHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHC
T ss_pred cccchhhcccccccccccCHHHHHHHH-HHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhc
Confidence 000 01232221 11111111111 1 1223334445566788889999888876321
Q ss_pred h---------------HHHHHHHhhHHHHHHHHhHhhccCCCceehhchhhHHHHHhccCCchHHHHHhcCChhhHHHHH
Q 023043 198 S---------------TVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLLGDILLDRSNSVVMTRYVSSRENLRILM 262 (288)
Q Consensus 198 ~---------------lvaefl~~nyd~Ff~~yn~~Ll~s~NYVTkRQSLKLLgelLldr~N~~vM~rYi~~~~NLKl~M 262 (288)
. -+...+......++..+. +.+.+++.-+|.-++.+||+++-. .-..+..|+ +.-+..++
T Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~-~~l~~~~~~vr~~~~~~L~~l~~~--~~~~l~~~l--~~ll~~l~ 481 (1230)
T 1u6g_C 407 PVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALH-KQMKEKSVKTRQCCFNMLTELVNV--LPGALTQHI--PVLVPGII 481 (1230)
T ss_dssp CC------------CCCHHHHHHHHTTHHHHHHH-HHTTCSCHHHHHHHHHHHHHHHHH--STTTTGGGH--HHHHHHHH
T ss_pred cccccccCccccccccchHHHHHHHhhHHHHHHH-HHhccCCHHHHHHHHHHHHHHHHH--chhhhHHHH--HHHHHHHH
Confidence 1 012233444445565664 678889988888899999999854 223333343 45567888
Q ss_pred HHhhCCCC--Ccccccceeee
Q 023043 263 NLLRQEYP--DRSISCFQAVC 281 (288)
Q Consensus 263 ~LL~d~sk--nIQ~EAFhVf~ 281 (288)
.+|.|+.. .++.+|...+.
T Consensus 482 ~~L~d~~~~~~v~~~a~~~l~ 502 (1230)
T 1u6g_C 482 FSLNDKSSSSNLKIDALSCLY 502 (1230)
T ss_dssp HHTTCSSSCHHHHHHHHHHHH
T ss_pred HHHcCCCCcchHHHHHHHHHH
Confidence 89999875 77777655443
No 51
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=55.34 E-value=66 Score=34.13 Aligned_cols=79 Identities=19% Similarity=0.226 Sum_probs=57.4
Q ss_pred cCchhhhhHHHHHHHHHHHHHHHHHHhc--chhhHhhhhhc----cCCCchhhhhHHHHHHHHHhh-----ChhHHHHHH
Q 023043 136 ENTDMALHYGAMLRECIRHQSVARYVLE--SQHMKKFFDYI----QLPNFDIAADAAATFKELLTR-----HKSTVAEFL 204 (288)
Q Consensus 136 ~~~dial~~G~mLRecik~e~la~~iL~--~~~f~~fF~yv----~~~~FdiasDAf~TfkelLt~-----Hk~lvaefl 204 (288)
++||.-..-=.+||.++.|-.- .+|. ++.|..+++.+ ..+.-||+.-++..+.+++.+ ....+.+|.
T Consensus 816 ~~Pe~r~~ff~ll~~~~~~~f~--~~~~~~~~~~~~~~~~~~~a~~h~~r~~~~~~l~~~~~ll~~~~~~~~~~~~~~f~ 893 (1023)
T 4hat_C 816 EYPEHRVEFYKLLKVINEKSFA--AFLELPPAAFKLFVDAICWAFKHNNRDVEVNGLQIALDLVKNIERMGNVPFANEFH 893 (1023)
T ss_dssp SSHHHHHHHHHHHHHHHHHCTH--HHHTSCHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHCSSHHHHHHH
T ss_pred cChHHHHHHHHHHHHHHHHChH--HHHcCCHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 4677777777777777766322 3444 44788888743 689999999999999999973 234677999
Q ss_pred HhhHHHHHHHHh
Q 023043 205 SKNYDWFFAEYN 216 (288)
Q Consensus 205 ~~nyd~Ff~~yn 216 (288)
.+.|-.++.+.-
T Consensus 894 ~~~~~~~~~~~~ 905 (1023)
T 4hat_C 894 KNYFFIFVSETF 905 (1023)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 998888866643
No 52
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=54.18 E-value=84 Score=25.23 Aligned_cols=148 Identities=14% Similarity=0.173 Sum_probs=87.4
Q ss_pred chHHHHHhhCCCCChhhhhhHHHHHHHHhhhcccCccchhhHhhcCHhHHHHHHHhccCchhhhhHHHHHHHHHHHHHHH
Q 023043 79 NTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYENTDMALHYGAMLRECIRHQSVA 158 (288)
Q Consensus 79 dll~~Li~~l~~L~fE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~peil~~L~~gY~~~dial~~G~mLRecik~e~la 158 (288)
+.+..|+..|..=+.+.|..+......+- .|+.+..|+...++++-. +|... -+.|+
T Consensus 50 ~~~~~L~~~l~~~~~~vr~~a~~aL~~~~----------------~~~~~~~L~~~l~~~~~~------vr~~a-~~aL~ 106 (211)
T 3ltm_A 50 RAVEPLIKALKDEDAWVRRAAADALGQIG----------------DERAVEPLIKALKDEDGW------VRQSA-AVALG 106 (211)
T ss_dssp GGHHHHHHHTTCSCHHHHHHHHHHHHHHC----------------CGGGHHHHHHHTTCSSHH------HHHHH-HHHHH
T ss_pred cHHHHHHHHHcCCCHHHHHHHHHHHHhhC----------------CHHHHHHHHHHHcCCCHH------HHHHH-HHHHH
Confidence 45666667666666667766655444331 244555555555544321 11111 01111
Q ss_pred HHHhcchhhHhhhhhccCCCchhhhhHHHHHHHHHhhChhHHHHHHHhhHHHHHHHHhHhhccCCCceehhchhhHHHHH
Q 023043 159 RYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLLGDI 238 (288)
Q Consensus 159 ~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefl~~nyd~Ff~~yn~~Ll~s~NYVTkRQSLKLLgel 238 (288)
++ =..+.+..+.+.++.++-+|-.-|...+..+ .++..+ ... ..++.+++.-+|+.++.-||.+
T Consensus 107 ~~-~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~--~~~~~~------------~~L-~~~l~d~~~~vr~~a~~aL~~~ 170 (211)
T 3ltm_A 107 QI-GDERAVEPLIKALKDEDWFVRIAAAFALGEI--GDERAV------------EPL-IKALKDEDGWVRQSAADALGEI 170 (211)
T ss_dssp HH-CCGGGHHHHHHHTTCSSHHHHHHHHHHHHHH--CCGGGH------------HHH-HHHTTCSSHHHHHHHHHHHHHH
T ss_pred Hh-CcHHHHHHHHHHHhCCCHHHHHHHHHHHHHc--CCHHHH------------HHH-HHHHcCCCHHHHHHHHHHHHHh
Confidence 11 1112344455566677777777777777665 222222 233 2677888888999999999987
Q ss_pred hccCCchHHHHHhcCChhhHHHHHHHhhCCCCCccccccee
Q 023043 239 LLDRSNSVVMTRYVSSRENLRILMNLLRQEYPDRSISCFQA 279 (288)
Q Consensus 239 Lldr~N~~vM~rYi~~~~NLKl~M~LL~d~sknIQ~EAFhV 279 (288)
.+++-+..+..+|.|++..++-.|-..
T Consensus 171 --------------~~~~~~~~L~~~l~d~~~~vr~~A~~a 197 (211)
T 3ltm_A 171 --------------GGERVRAAMEKLAETGTGFARKVAVNY 197 (211)
T ss_dssp --------------CSHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred --------------CchhHHHHHHHHHhCCCHHHHHHHHHH
Confidence 457778888888999888888776543
No 53
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=53.66 E-value=1.9e+02 Score=29.17 Aligned_cols=93 Identities=12% Similarity=0.063 Sum_probs=60.9
Q ss_pred chhhhhHHHHHHHHHhhChhHHHHHHHhh-HHHHHHHHhHhhccCCCceehhchhhHHHHHhccCCchHHHHHhcCC--h
Q 023043 179 FDIAADAAATFKELLTRHKSTVAEFLSKN-YDWFFAEYNSKLLESSNYITRRQAVKLLGDILLDRSNSVVMTRYVSS--R 255 (288)
Q Consensus 179 FdiasDAf~TfkelLt~Hk~lvaefl~~n-yd~Ff~~yn~~Ll~s~NYVTkRQSLKLLgelLldr~N~~vM~rYi~~--~ 255 (288)
=|+.-++|.-+..++..++..+-. ... ++.++...- ..+.+++.-+.+.+++.|.+++..-.+......++.. +
T Consensus 787 pd~~~~~f~ll~~~~~~~~~~~~~--~~~~~~~i~~~~~-~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~ 863 (963)
T 2x19_B 787 PDIVDSFMQLLAQALKRKPDLFLC--ERLDVKAVFQCAV-LALKFPEAPTVKASCGFFTELLPRCGEVESVGKVVQEDGR 863 (963)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGGGC--TTSCHHHHHHHHH-HHTTCSCHHHHHHHHHHHHHHGGGTTSSCHHHHHTTTSHH
T ss_pred chHHHHHHHHHHHHHHhCcHHHcC--CcccHHHHHHHHH-HHcCCCCHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Confidence 478889999999999888866521 222 677777764 6778899999999999999999653322344444431 1
Q ss_pred hhHHHHHHHhhCCCCCccc
Q 023043 256 ENLRILMNLLRQEYPDRSI 274 (288)
Q Consensus 256 ~NLKl~M~LL~d~sknIQ~ 274 (288)
.=+..+|..+.+....-.+
T Consensus 864 ~l~~~l~~~l~~~~~~~~~ 882 (963)
T 2x19_B 864 MLLIAVLEAIGGQASRSLM 882 (963)
T ss_dssp HHHHHHHHHHTTTSCGGGH
T ss_pred HHHHHHHHHhcccCChhHH
Confidence 2233445555655444443
No 54
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=51.92 E-value=89 Score=24.86 Aligned_cols=123 Identities=17% Similarity=0.168 Sum_probs=73.7
Q ss_pred HHhhchHHHHHhhCCCCChhhhhhHHHHHHHHhhhcccCccchhhHhhcCHhHHHHHHHhccCchh--hhhHHHHHHHHH
Q 023043 75 FFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYENTDM--ALHYGAMLRECI 152 (288)
Q Consensus 75 i~~~dll~~Li~~l~~L~fE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~peil~~L~~gY~~~di--al~~G~mLReci 152 (288)
+-..+.+..|+..|..=+.+.|..+......+ ..|+.+..|+...++++- -..+-..|.
T Consensus 72 ~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~----------------~~~~~~~~L~~~l~d~~~~vr~~a~~aL~--- 132 (201)
T 3ltj_A 72 IGDERAVEPLIKALKDEDGWVRQSAAVALGQI----------------GDERAVEPLIKALKDEDWFVRIAAAFALG--- 132 (201)
T ss_dssp HCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHH----------------CCGGGHHHHHHHTTCSSHHHHHHHHHHHH---
T ss_pred hCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHh----------------CcHHHHHHHHHHHcCCCHHHHHHHHHHHH---
Confidence 33445777888877776666666555544332 135677777777766553 222222222
Q ss_pred HHHHHHHHHhcchhhHhhhhhccCCCchhhhhHHHHHHHHHhhChhHHHHHHHhhHHHHHHHHhHhhccCCCceehhchh
Q 023043 153 RHQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAV 232 (288)
Q Consensus 153 k~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefl~~nyd~Ff~~yn~~Ll~s~NYVTkRQSL 232 (288)
++ =..+....+.+.++.++-+|-..|...+..+ ..+ ...... ..++.+++...|+.+.
T Consensus 133 ------~~-~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~--~~~------------~~~~~L-~~~l~d~~~~vr~~A~ 190 (201)
T 3ltj_A 133 ------EI-GDERAVEPLIKALKDEDGWVRQSAADALGEI--GGE------------RVRAAM-EKLAETGTGFARKVAV 190 (201)
T ss_dssp ------HH-TCGGGHHHHHHHTTCSSHHHHHHHHHHHHHH--CSH------------HHHHHH-HHHHHHCCHHHHHHHH
T ss_pred ------Hh-CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHh--Cch------------hHHHHH-HHHHhCCCHHHHHHHH
Confidence 21 1223445556677778888888887777776 122 223334 2677888888898888
Q ss_pred hHHHHH
Q 023043 233 KLLGDI 238 (288)
Q Consensus 233 KLLgel 238 (288)
.-|+.+
T Consensus 191 ~aL~~l 196 (201)
T 3ltj_A 191 NYLETH 196 (201)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 888875
No 55
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=49.88 E-value=74 Score=34.19 Aligned_cols=79 Identities=14% Similarity=0.147 Sum_probs=57.1
Q ss_pred cCchhhhhHHHHHHHHHHHHHHHHHHhc--chhhHhhhhhc----cCCCchhhhhHHHHHHHHHhh---ChhHHHHHHHh
Q 023043 136 ENTDMALHYGAMLRECIRHQSVARYVLE--SQHMKKFFDYI----QLPNFDIAADAAATFKELLTR---HKSTVAEFLSK 206 (288)
Q Consensus 136 ~~~dial~~G~mLRecik~e~la~~iL~--~~~f~~fF~yv----~~~~FdiasDAf~TfkelLt~---Hk~lvaefl~~ 206 (288)
+.||.-..-=..||.+..|=. ..+|. .+.|..+++-+ ..+.-||+.-+..++.++|.+ +...+.+|..+
T Consensus 842 ~~Pe~r~~ff~ll~~~~~~~f--~~l~~l~~~~~~~~i~~i~wa~kh~~r~i~~~~l~~~~~ll~~~~~~~~~~~~F~~~ 919 (1073)
T 3gjx_A 842 EYPEHRTNFFLLLQAVNSHCF--PAFLAIPPAQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQEEAAAQSFYQT 919 (1073)
T ss_dssp SCHHHHHHHHHHHHHHHHHCG--GGTTTSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHh--HHHHcCCHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHH
Confidence 457777777778888777611 12333 44667777532 689999999999999999975 65677799998
Q ss_pred hHHHHHHHHh
Q 023043 207 NYDWFFAEYN 216 (288)
Q Consensus 207 nyd~Ff~~yn 216 (288)
.|-.+....-
T Consensus 920 ~~~~~~~~i~ 929 (1073)
T 3gjx_A 920 YFCDILQHIF 929 (1073)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888866543
No 56
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=48.86 E-value=1.7e+02 Score=27.21 Aligned_cols=92 Identities=12% Similarity=0.130 Sum_probs=69.8
Q ss_pred HhHHHHHHHh---------ccCchhhhhHHHHHHHHHHHHHHHHHHhcchhhHhhhhh----ccCCCchhhhhHHHHHHH
Q 023043 125 IDLLDILIAG---------YENTDMALHYGAMLRECIRHQSVARYVLESQHMKKFFDY----IQLPNFDIAADAAATFKE 191 (288)
Q Consensus 125 peil~~L~~g---------Y~~~dial~~G~mLRecik~e~la~~iL~~~~f~~fF~y----v~~~~FdiasDAf~Tfke 191 (288)
|.|++.+..+ .+.||.-..-=.+||.|..|---+=.-|-.+.|..+.+- +..+.-+||--++.++.+
T Consensus 114 p~Il~~VFe~TL~MI~~df~eyPehR~~Ff~LL~ai~~~cF~al~~lp~~~fklvidsiiWa~kH~~r~V~e~gL~il~~ 193 (321)
T 1w9c_A 114 PQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKLVLDSIIWAFKHTMRNVADTGLQILFT 193 (321)
T ss_dssp HHHHHHHHHHHHHHHSSTTTCSHHHHHHHHHHHHHHHHHCTTHHHHSCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHH
Confidence 7777776543 478999999999999999873333333677778877775 479999999999999999
Q ss_pred HHhh---ChhHHHHHHHhhHHHHHHHHh
Q 023043 192 LLTR---HKSTVAEFLSKNYDWFFAEYN 216 (288)
Q Consensus 192 lLt~---Hk~lvaefl~~nyd~Ff~~yn 216 (288)
+|.+ +...+.+|..+.|-....+.-
T Consensus 194 ll~n~~~~~~~~~~Fy~~fy~~il~~if 221 (321)
T 1w9c_A 194 LLQNVAQEEAAAQSFYQTYFCDILQHIF 221 (321)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcChHHHHHHHHHHHHHHHHHHH
Confidence 9985 455666887777777666654
No 57
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=47.54 E-value=1e+02 Score=29.87 Aligned_cols=137 Identities=17% Similarity=0.219 Sum_probs=73.1
Q ss_pred hHHHHHhhCCCCChhhhhhHHHHHHHHhhhcccCccchhhHhhcCHhHHH----HHHHhccCchhhhhHHHHHHHHH--H
Q 023043 80 TLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLD----ILIAGYENTDMALHYGAMLRECI--R 153 (288)
Q Consensus 80 ll~~Li~~l~~L~fE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~peil~----~L~~gY~~~dial~~G~mLReci--k 153 (288)
++..++..++.=+++.||-+..-...+.+ .+||.+. .+.+.-.+++-.. -|.-||-.. .
T Consensus 50 ~~~~vi~l~~s~~~~~Krl~yl~l~~~~~--------------~~~e~~~l~~n~l~kdL~~~n~~i-r~~AL~~L~~i~ 114 (591)
T 2vgl_B 50 LFPDVVNCMQTDNLELKKLVYLYLMNYAK--------------SQPDMAIMAVNSFVKDCEDPNPLI-RALAVRTMGCIR 114 (591)
T ss_dssp GHHHHHHTTSSSCHHHHHHHHHHHHHHHH--------------HSHHHHHTTHHHHGGGSSSSSHHH-HHHHHHHHHTCC
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHcc--------------cCchHHHHHHHHHHHHcCCCCHHH-HHHHHHHHHcCC
Confidence 45566667777788877766554444433 2344432 2223333333221 122233211 1
Q ss_pred HHHHHHHHhcchhhHhhhhhccCCCchhhhhHHHHHHHHHhhChhHHHHHHHhhHHHHHHHHhHhhccCCCceehhchhh
Q 023043 154 HQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVK 233 (288)
Q Consensus 154 ~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefl~~nyd~Ff~~yn~~Ll~s~NYVTkRQSLK 233 (288)
.+.+++.+. -.+.+.+..++-.|-.-|...+-.+....+.++-+ +.++.... .+|.++|...++.++.
T Consensus 115 ~~~~~~~l~-----~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~------~~~~~~l~-~lL~d~d~~V~~~A~~ 182 (591)
T 2vgl_B 115 VDKITEYLC-----EPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVED------QGFLDSLR-DLIADSNPMVVANAVA 182 (591)
T ss_dssp SGGGHHHHH-----HHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHH------HHHHHHHH-HTTSCSCHHHHHHHHH
T ss_pred hHHHHHHHH-----HHHHHHcCCCChHHHHHHHHHHHHHHhhChhhccc------ccHHHHHH-HHhCCCChhHHHHHHH
Confidence 222333222 11233344555566556666665555555554421 35666774 8888889899999999
Q ss_pred HHHHHhccCC
Q 023043 234 LLGDILLDRS 243 (288)
Q Consensus 234 LLgelLldr~ 243 (288)
.|+++--+.+
T Consensus 183 aL~~i~~~~~ 192 (591)
T 2vgl_B 183 ALSEISESHP 192 (591)
T ss_dssp HHHHHTTSCC
T ss_pred HHHHHHhhCC
Confidence 9999876543
No 58
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=45.22 E-value=54 Score=26.99 Aligned_cols=89 Identities=9% Similarity=-0.001 Sum_probs=60.9
Q ss_pred CCCcHHHHHHHHHHHHhh------chHHHHHhhCCCCChhhhhhHHHHHHHHhhhcccCccchhhHhhcCHhHHHHHH--
Q 023043 61 SEPVSEACAQLTAEFFRE------NTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILI-- 132 (288)
Q Consensus 61 ~~p~~e~~~qLa~ei~~~------dll~~Li~~l~~L~fE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~peil~~L~-- 132 (288)
..|..-...++|+..+++ .++..|..-|..=+...+-.+-+|...|++ .+....++.+..|..+|..|.
T Consensus 25 ~~~pgylm~EIA~~T~~s~~~~~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~---~Gs~~f~~~~r~~~~~Ik~l~~F 101 (140)
T 1vdy_A 25 KVAPVYKLEEICDLLRSSHVSIVKEFSEFILKRLDNKSPIVKQKALRLIKYAVG---KSGSEFRREMQRNSVAVRNLFHY 101 (140)
T ss_dssp SCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTT---TSCHHHHHHHHHTTHHHHTTTTC
T ss_pred CCCcHHHHHHHHHHHHhcchhHHHHHHHHHHHHhcCCCcceeehHHHHHHHHHH---hCCHHHHHHHHHhHHHHHHHHhc
Confidence 334445678888888774 356778888877776666677777777776 233456888888888888874
Q ss_pred HhccCchhhhhHHHHHHHHH
Q 023043 133 AGYENTDMALHYGAMLRECI 152 (288)
Q Consensus 133 ~gY~~~dial~~G~mLReci 152 (288)
+|..+|--+-.-|...|+-.
T Consensus 102 ~g~~dp~~G~d~g~~VR~~A 121 (140)
T 1vdy_A 102 KGHPDPLKGDALNKAVRETA 121 (140)
T ss_dssp CCCCCTTTSSCHHHHHHHHH
T ss_pred CCCCCcccccchhHHHHHHH
Confidence 44444445666778888755
No 59
>1ddb_A Protein (BID); apoptosis, programmed cell death, BCL-2 family, BH3 domain; NMR {Mus musculus} SCOP: f.1.4.1
Probab=44.25 E-value=16 Score=31.98 Aligned_cols=80 Identities=18% Similarity=0.325 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHHhhhccCCCCCCcHHHHHHHHHHHHhhc------------hHHHHHhhCCCCChhhhhhHHHHHHHH
Q 023043 39 DKMAELCKNIRELKSILYGNSESEPVSEACAQLTAEFFREN------------TLRLLITCLPKLNLEARKDATQVVANL 106 (288)
Q Consensus 39 ~k~eei~K~L~~mK~il~G~~e~~p~~e~~~qLa~ei~~~d------------ll~~Li~~l~~L~fE~RKdv~~If~~l 106 (288)
+..-+|++.|.+|-.-+.+.. .|..+..|+..+-+.+ .+..|++..| -|+| +-.+..+++-|
T Consensus 81 e~ir~IA~qLa~igD~le~sI----~p~~v~~L~~~~~N~slsEEdrr~~LAaaleql~Qt~P-~dme-kEk~~L~lamL 154 (195)
T 1ddb_A 81 EIIHNIARHLAQIGDEMDHNI----QPTLVRQLAAQFMNGSLSEEDKRNCLAKALDEVKTAFP-RDME-NDKAMLIMTML 154 (195)
T ss_dssp CSHHHHHHHHHHHHHHHGGGC----CSSSHHHHHHHHCCSSSSSSSTTHHHHHHHHHHHHHSC-STHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccc----CHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHcC-chHH-HHHHHHHHHHH
Confidence 335689999999999998743 3456777777775332 3678899998 7888 56688899999
Q ss_pred hhhcccCccch---------hhHhhcC
Q 023043 107 QRQQVHSKLIA---------SDYLEAN 124 (288)
Q Consensus 107 lr~~~~~r~p~---------v~Yl~~~ 124 (288)
|-.++-+..|. |.||..|
T Consensus 155 LaKKVa~htPsLLrdVf~TTVnFInqN 181 (195)
T 1ddb_A 155 LAKKVASHAPSLLRDVFHTTVNFINQN 181 (195)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhChHHHHHHHHHHHHHHHHh
Confidence 99888777763 6666553
No 60
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=43.65 E-value=99 Score=28.88 Aligned_cols=116 Identities=12% Similarity=0.160 Sum_probs=72.0
Q ss_pred HHHHH-hhchHHHHHhhCCCCChhhhhhHHHHHHHHhhhcccCccchhhHhhcC---HhHHHHHHHhcc----Cchhhhh
Q 023043 72 TAEFF-RENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEAN---IDLLDILIAGYE----NTDMALH 143 (288)
Q Consensus 72 a~ei~-~~dll~~Li~~l~~L~fE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~---peil~~L~~gY~----~~dial~ 143 (288)
++.+. ..+.++.|+..|..=+++.||.++...+++-+.. ...++... |.++..|-.+-. .+++...
T Consensus 323 ~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~------~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~ 396 (457)
T 1xm9_A 323 SQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP------LLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSS 396 (457)
T ss_dssp HHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSG------GGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHH
T ss_pred HHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCH------HHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHH
Confidence 34444 4688999999999999999999999999997632 23333331 344443332211 1245544
Q ss_pred HHHHHHHHHH-HHHHHHHHhcchhhHhhhhhccCC-CchhhhhHHHHHHHHH
Q 023043 144 YGAMLRECIR-HQSVARYVLESQHMKKFFDYIQLP-NFDIAADAAATFKELL 193 (288)
Q Consensus 144 ~G~mLRecik-~e~la~~iL~~~~f~~fF~yv~~~-~FdiasDAf~TfkelL 193 (288)
+-..|..+++ ....++.+.+...+.++.+....+ +=+|.-.|..++..++
T Consensus 397 ~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~ 448 (457)
T 1xm9_A 397 ACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMW 448 (457)
T ss_dssp HHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 5445666554 345677777777777777766666 5566666666654433
No 61
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=41.43 E-value=3e+02 Score=28.04 Aligned_cols=103 Identities=9% Similarity=0.129 Sum_probs=64.9
Q ss_pred CCChhhhhhHHHHHHHHhhhcccCc-----cchhhHhhcCHhHHHHHHHhccCchhhhhHHHHHHHHHHHHHHHHHHhcc
Q 023043 90 KLNLEARKDATQVVANLQRQQVHSK-----LIASDYLEANIDLLDILIAGYENTDMALHYGAMLRECIRHQSVARYVLES 164 (288)
Q Consensus 90 ~L~fE~RKdv~~If~~llr~~~~~r-----~p~v~Yl~~~peil~~L~~gY~~~dial~~G~mLRecik~e~la~~iL~~ 164 (288)
..+-+.|--++.++.+.+++.-..+ .|.-+.-.=+..++..|... .+.+....|..+...++++--. =+.
T Consensus 48 ~~~~~vR~~A~i~lkn~i~~~w~~~~~~~~l~~~~k~~ik~~ll~~l~~~--~~~ir~~l~~~ia~ia~~d~p~---~Wp 122 (960)
T 1wa5_C 48 NLPLSTRLAGALFFKNFIKRKWVDENGNHLLPANNVELIKKEIVPLMISL--PNNLQVQIGEAISSIADSDFPD---RWP 122 (960)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHHHHHHHHHHHHHHHHS--CHHHHHHHHHHHHHHHHHHSTT---TCT
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHhhCcc---chh
Confidence 3467888888888888887654321 11111111145566666653 3667777777777777664321 123
Q ss_pred hhhHhhhhhccCCCchhhhhHHHHHHHHHhhCh
Q 023043 165 QHMKKFFDYIQLPNFDIAADAAATFKELLTRHK 197 (288)
Q Consensus 165 ~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk 197 (288)
+.+..+++.++.++...---|+.++.+++.+.+
T Consensus 123 ~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~ 155 (960)
T 1wa5_C 123 TLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWR 155 (960)
T ss_dssp THHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGT
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 455667777887777777788999999887543
No 62
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=41.10 E-value=63 Score=27.94 Aligned_cols=173 Identities=10% Similarity=0.141 Sum_probs=89.1
Q ss_pred CCCChhhhhhHHHHHHH-HhhhcccCccchhhHhhcCHhHHHHHHHhc-cCchhhh--hHHHHHHHHHHHHHHHHHHhcc
Q 023043 89 PKLNLEARKDATQVVAN-LQRQQVHSKLIASDYLEANIDLLDILIAGY-ENTDMAL--HYGAMLRECIRHQSVARYVLES 164 (288)
Q Consensus 89 ~~L~fE~RKdv~~If~~-llr~~~~~r~p~v~Yl~~~peil~~L~~gY-~~~dial--~~G~mLRecik~e~la~~iL~~ 164 (288)
..=+|..||.+..-... ++... .+... --....++++.|..+- +++++.. .+...|.. +|+-+ ..
T Consensus 26 ~s~~w~eRk~al~~L~~~~~~~~--~~i~~--~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~------la~~l-~~ 94 (249)
T 2qk1_A 26 TSSKWKDRVEALEEFWDSVLSQT--KKLKS--TSQNYSNLLGIYGHIIQKDANIQAVALAAQSVEL------ICDKL-KT 94 (249)
T ss_dssp TCSSHHHHHHHHHHHHHHTGGGC--CCBCC--TTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHH------HHHHH-CT
T ss_pred hcCCHHHHHHHHHHHHHHHHhcC--Ccccc--CcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHH------HHHhc-cc
Confidence 45588899988877777 76421 11110 0011268888888887 4555433 22222222 22211 10
Q ss_pred hh---------hHhhhhhccCCCchhhhhHHHHHHHHHhhChhHHHHHHHhhHHHHHHHHhHhhccCCCceehhchhhHH
Q 023043 165 QH---------MKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLL 235 (288)
Q Consensus 165 ~~---------f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefl~~nyd~Ff~~yn~~Ll~s~NYVTkRQSLKLL 235 (288)
+. +-.+++.+.-..=.|..-|...+..+...-.+ ++.+ ...+....... ..|.++|.=+|.+++..|
T Consensus 95 ~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~-~~~~--~~l~~ll~~l~-~~l~~k~~~vk~~al~~l 170 (249)
T 2qk1_A 95 PGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDP-LASS--GRNEDMLKDIL-EHMKHKTPQIRMECTQLF 170 (249)
T ss_dssp TTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCT-TCTT--CTTHHHHHHHH-HHTTCSSHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccc-cccC--CcHHHHHHHHH-HHHcCCChHHHHHHHHHH
Confidence 11 22333444433333433333333332221100 0000 01344555554 678899999999999999
Q ss_pred HHHhccCCch-HHHHHhcCChhhHHHHHHHhhCCCCCcccccc
Q 023043 236 GDILLDRSNS-VVMTRYVSSRENLRILMNLLRQEYPDRSISCF 277 (288)
Q Consensus 236 gelLldr~N~-~vM~rYi~~~~NLKl~M~LL~d~sknIQ~EAF 277 (288)
+.++-.-.-. ..+..|+ ++.-+..++.+|.|..+.++-.|+
T Consensus 171 ~~~~~~~~~~~~~l~~~l-~~~iip~l~~~l~D~~~~VR~aA~ 212 (249)
T 2qk1_A 171 NASMKEEKDGYSTLQRYL-KDEVVPIVIQIVNDTQPAIRTIGF 212 (249)
T ss_dssp HHHHHHCCSCSHHHHHHH-TTTHHHHHHHHHTCSSHHHHHHHH
T ss_pred HHHHHHcCCcchhHHHHH-HHHHHHHHHHHhcCCCHHHHHHHH
Confidence 9999542221 4445555 134556677777887766665443
No 63
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=41.01 E-value=2.6e+02 Score=27.17 Aligned_cols=42 Identities=10% Similarity=0.087 Sum_probs=27.4
Q ss_pred hccCCCchhhhhHHHHHHHHHhhChhHHHHHHHhhHHHHHHHH
Q 023043 173 YIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEY 215 (288)
Q Consensus 173 yv~~~~FdiasDAf~TfkelLt~Hk~lvaefl~~nyd~Ff~~y 215 (288)
.+..++-.|.+.|...+.++...++.. .+.+....+.++...
T Consensus 187 lL~D~d~~V~~~Al~~L~~i~~~~~~~-~~~~~~~v~~l~~~L 228 (618)
T 1w63_A 187 LLNEKNHGVLHTSVVLLTEMCERSPDM-LAHFRKLVPQLVRIL 228 (618)
T ss_dssp STTCCCHHHHHHHHHHHHHHCCSHHHH-HHHHHTTHHHHHHHH
T ss_pred HhCCCCHhHHHHHHHHHHHHHHhChHH-HHHHHHHHHHHHHHH
Confidence 445778889999999999987765543 333344444455443
No 64
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=38.31 E-value=1.2e+02 Score=28.28 Aligned_cols=130 Identities=17% Similarity=0.182 Sum_probs=87.3
Q ss_pred HhHHHHHHHhccCchhhhhHHHHHHHHHHH-HHHHHHHhcchhhHhhhhhccCCCchhhhhHHHHHHHHHhhChhHHHHH
Q 023043 125 IDLLDILIAGYENTDMALHYGAMLRECIRH-QSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEF 203 (288)
Q Consensus 125 peil~~L~~gY~~~dial~~G~mLRecik~-e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaef 203 (288)
|.++..|-+ +++++-..+-..|+....+ +.....+.....+-.+.+.+..++=++.-.|...++.|...+...-...
T Consensus 5 ~~lv~~L~s--~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i 82 (457)
T 1xm9_A 5 PKAVQYLSS--QDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLET 82 (457)
T ss_dssp HHHHHHHHS--SCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred HHHHHHHCC--CCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 344444433 3567777777777775544 3444477788888888899998988999999999999887555554444
Q ss_pred HHhhHHHHHHHHhHhhcc-CCCceehhchhhHHHHHhccCCchHHHHHhcCChhhHHHHHHHh
Q 023043 204 LSKNYDWFFAEYNSKLLE-SSNYITRRQAVKLLGDILLDRSNSVVMTRYVSSRENLRILMNLL 265 (288)
Q Consensus 204 l~~nyd~Ff~~yn~~Ll~-s~NYVTkRQSLKLLgelLldr~N~~vM~rYi~~~~NLKl~M~LL 265 (288)
....-= ... -+||. +++.-+++++.-.|+.|-.+..|...+. + .=+..++.+|
T Consensus 83 ~~~G~i---~~L-v~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~----~-g~i~~Lv~ll 136 (457)
T 1xm9_A 83 RRQNGI---REA-VSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELI----A-DALPVLADRV 136 (457)
T ss_dssp HHTTCH---HHH-HHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHH----H-HHHHHHHHHT
T ss_pred HHcCCH---HHH-HHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHH----h-ccHHHHHHHH
Confidence 444322 222 26777 8888889999999999888866655332 2 4455555555
No 65
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=38.09 E-value=29 Score=35.53 Aligned_cols=60 Identities=25% Similarity=0.219 Sum_probs=48.3
Q ss_pred hhccCCCceehhchhhHHHHHhccCCchHHHHHhcCChhhHHHHHHHhhCCCCCcccccce
Q 023043 218 KLLESSNYITRRQAVKLLGDILLDRSNSVVMTRYVSSRENLRILMNLLRQEYPDRSISCFQ 278 (288)
Q Consensus 218 ~Ll~s~NYVTkRQSLKLLgelLldr~N~~vM~rYi~~~~NLKl~M~LL~d~sknIQ~EAFh 278 (288)
.||++++|-+|.-+++||.-|+..|... +-...++.|.-.-.+|.+|.|++.-||=||--
T Consensus 129 ~lL~~~df~vR~~alqlL~~L~~~r~~~-~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneall 188 (651)
T 3grl_A 129 SLLEEFDFHVRWPGVKLLTSLLKQLGPQ-VQQIILVSPMGVSRLMDLLADSREVIRNDGVL 188 (651)
T ss_dssp HHTTCCCHHHHHHHHHHHHHHHHHSHHH-HHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHH
T ss_pred HHhcCccHHHHHHHHHHHHHHHhcCcHH-HHHHHHhCcccHHHHHHHHhCchHHHHHHHHH
Confidence 5789999999999999999999776642 22333447899999999999999888887743
No 66
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=36.63 E-value=77 Score=25.25 Aligned_cols=42 Identities=19% Similarity=0.226 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCCcHHHHHHHHHHHHhhchH
Q 023043 40 KMAELCKNIRELKSILYGNSESEPVSEACAQLTAEFFRENTL 81 (288)
Q Consensus 40 k~eei~K~L~~mK~il~G~~e~~p~~e~~~qLa~ei~~~dll 81 (288)
+.+|++|.|..+-.-|-..+=.++..+...+|++++-+.|+-
T Consensus 37 ~~~D~~KRL~~LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~ 78 (118)
T 2yru_A 37 VCDDISRRLALLREQWAGGKLSIPVKKRMALLVQELLHHQWD 78 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCHH
Confidence 368999999999888875554555567788999998877764
No 67
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=32.10 E-value=3.2e+02 Score=25.59 Aligned_cols=139 Identities=13% Similarity=0.098 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHhhhccCCCCCCcHHHHHHHHHHHHhhchHHHHHhhCCCCChhhhhhHHHHHHHHhhhcccCccchhhHh
Q 023043 42 AELCKNIRELKSILYGNSESEPVSEACAQLTAEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYL 121 (288)
Q Consensus 42 eei~K~L~~mK~il~G~~e~~p~~e~~~qLa~ei~~~dll~~Li~~l~~L~fE~RKdv~~If~~llr~~~~~r~p~v~Yl 121 (288)
+|.-+.|..+|.++..|.+ +|+|+++.|=+..|+.....-+-+...-+-.-|..++-+-.| .+=+
T Consensus 133 ~~lr~aLfsLk~~~q~D~~----------Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~G-----m~gv 197 (339)
T 3dad_A 133 PELRRSLFSLKQIFQEDKD----------LVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDG-----MLGV 197 (339)
T ss_dssp HHHHHHHHHHHHHHHTCTT----------HHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHH-----HHHH
T ss_pred HHHHHHHHHHHHHhhcchH----------HHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhcccc-----ccch
Confidence 4778889999999885543 999999999888888888888777766666666666543211 1223
Q ss_pred hcCHhHHHHHHHhccC--chhhhhHHHHHHHHHHH-HHHHHHHhcchh----------hHhhhhhcc---CCCchhhhhH
Q 023043 122 EANIDLLDILIAGYEN--TDMALHYGAMLRECIRH-QSVARYVLESQH----------MKKFFDYIQ---LPNFDIAADA 185 (288)
Q Consensus 122 ~~~peil~~L~~gY~~--~dial~~G~mLRecik~-e~la~~iL~~~~----------f~~fF~yv~---~~~FdiasDA 185 (288)
..||+.+..+..--+. +.+.=.+-.+|.-++-+ |..+..+...-. +..+...++ .++=|+..-|
T Consensus 198 vs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~a 277 (339)
T 3dad_A 198 VAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYT 277 (339)
T ss_dssp HHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHH
T ss_pred hCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHH
Confidence 4488888888654332 33333455555554443 223332222111 445555554 5566666666
Q ss_pred HHHHHHHHhh
Q 023043 186 AATFKELLTR 195 (288)
Q Consensus 186 f~TfkelLt~ 195 (288)
++-+..+|..
T Consensus 278 mtLIN~lL~~ 287 (339)
T 3dad_A 278 VTLINKTLAA 287 (339)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 6666666553
No 68
>2jqq_A Conserved oligomeric golgi complex subunit 2; protein, helical bundle, vesicular transport, tethering, protein transport; NMR {Saccharomyces cerevisiae}
Probab=31.29 E-value=1.4e+02 Score=26.14 Aligned_cols=64 Identities=13% Similarity=0.234 Sum_probs=42.0
Q ss_pred hHHHHHHHHHHHHHhhcCCCc-hhhhhHHHHHHHHHHHHHHHhhhccCCCCCCcHHHHHHHHHHHHh
Q 023043 12 PVDIVRQTRDLIIYANRSADV-RESKREDKMAELCKNIRELKSILYGNSESEPVSEACAQLTAEFFR 77 (288)
Q Consensus 12 P~elVr~l~e~l~~L~~~~~~-~~~K~~~k~eei~K~L~~mK~il~G~~e~~p~~e~~~qLa~ei~~ 77 (288)
..|.|....|-|.+||.-.+. .+-+.-...-+++|.|..--+.++|++. -.+|.|..|+.++++
T Consensus 74 Tre~v~d~l~YLkkLD~l~~~Lq~h~~Lse~l~l~kqLs~sLh~mC~~~p--ld~eLc~~l~~qL~~ 138 (204)
T 2jqq_A 74 TQEIIKDVLEYLKKLDEIYGSLRNHSQLTEALSLGKRLSKSLHEMCGIEP--LEEEICSGLIEQLYK 138 (204)
T ss_dssp THHHHHHHHHHHHHHHHHHHTCSSSSHHHHHHHHHHHHHHHHHHHHTSSC--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCC--CcHHHHHHHHHHHHH
Confidence 378888888888888862110 0001111124688888888889999875 556788888888764
No 69
>2bid_A Protein (BID); programmed cell death, apoptosis regulation and amplification; NMR {Homo sapiens} SCOP: f.1.4.1
Probab=30.77 E-value=1.1e+02 Score=26.65 Aligned_cols=79 Identities=13% Similarity=0.252 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCCcHHHHHHHHHHHHhhchHH------------HHHhhCCCCChhhhhhHHHHHHHHh
Q 023043 40 KMAELCKNIRELKSILYGNSESEPVSEACAQLTAEFFRENTLR------------LLITCLPKLNLEARKDATQVVANLQ 107 (288)
Q Consensus 40 k~eei~K~L~~mK~il~G~~e~~p~~e~~~qLa~ei~~~dll~------------~Li~~l~~L~fE~RKdv~~If~~ll 107 (288)
....|++.|.+|-.-+.+. ..|..+..|+..+-+.++-. .+++..|. |.| +-...-+.+-||
T Consensus 84 iir~IA~qLAqiGD~md~s----I~P~lV~~La~qf~N~~lsEEdrr~~LAaaleql~Qt~P~-Dme-qEKtmLvlamLL 157 (197)
T 2bid_A 84 IIRNIARHLAQVGDSMDRS----IPPGLVNGLALQLRNTSRSEEDRNRDLATALEQLLQAYPR-DME-KEKTMLVLALLL 157 (197)
T ss_dssp HHHHHHHHHHHHHHHHHTT----CCTTCHHHHHHHHHSGGGHHHHHHHHHHHHHHHHHTTSCC-SSC-SHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcc----CChHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHCCC-cHh-HHHHHHHHHHHH
Confidence 3467999999999999874 44577888888877766543 34444442 444 335677788888
Q ss_pred hhcccCccc---------hhhHhhcC
Q 023043 108 RQQVHSKLI---------ASDYLEAN 124 (288)
Q Consensus 108 r~~~~~r~p---------~v~Yl~~~ 124 (288)
-.++-+-.| ||.||..|
T Consensus 158 AKKVa~htPSLLrdVF~TTVnfInqN 183 (197)
T 2bid_A 158 AKKVASHTPSLLRDVFHTTVNFINQN 183 (197)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHhcChHHHHHHHHHHHHHHHHH
Confidence 877766555 36676554
No 70
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=27.02 E-value=3.2e+02 Score=26.53 Aligned_cols=99 Identities=12% Similarity=0.137 Sum_probs=51.1
Q ss_pred hccCCCchhhhhHHHHHHHHHhhChhHHHHHHHhhHHHHHHHHhHhhccCCCceehhchhhHHHHHhccCCchHH----H
Q 023043 173 YIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLLGDILLDRSNSVV----M 248 (288)
Q Consensus 173 yv~~~~FdiasDAf~TfkelLt~Hk~lvaefl~~nyd~Ff~~yn~~Ll~s~NYVTkRQSLKLLgelLldr~N~~v----M 248 (288)
+++.+.=+|--=|..++..+...|+.++.+ +.+.++ ..+.+++--.||.++.+|+.+. +..|... +
T Consensus 321 ~L~~~d~~vr~~aL~~L~~i~~~~p~~~~~----~~~~i~-----~~l~d~d~~Ir~~alelL~~l~-~~~nv~~iv~eL 390 (618)
T 1w63_A 321 FLLNNDKNIRYVALTSLLKTVQTDHNAVQR----HRSTIV-----DCLKDLDVSIKRRAMELSFALV-NGNNIRGMMKEL 390 (618)
T ss_dssp HHTCSSTTTHHHHHHHHHHHHHHHHHHHGG----GHHHHH-----HGGGSSCHHHHHHHHHHHHHHC-CSSSTHHHHHHH
T ss_pred HHhCCCCchHHHHHHHHHHHHhhCHHHHHH----HHHHHH-----HHccCCChhHHHHHHHHHHHHc-ccccHHHHHHHH
Confidence 344444455555666666666666554432 333333 2334444445556666665554 2333221 2
Q ss_pred HHhcCC------------------------hhhHHHHHHHhhCCCCCcccccceeee
Q 023043 249 TRYVSS------------------------RENLRILMNLLRQEYPDRSISCFQAVC 281 (288)
Q Consensus 249 ~rYi~~------------------------~~NLKl~M~LL~d~sknIQ~EAFhVf~ 281 (288)
..|+.+ ...+..++.+|++....++-|+-++++
T Consensus 391 ~~~l~~~d~e~r~~~v~~I~~la~k~~~~~~~~v~~ll~lL~~~~~~v~~~~~~~l~ 447 (618)
T 1w63_A 391 LYFLDSCEPEFKADCASGIFLAAEKYAPSKRWHIDTIMRVLTTAGSYVRDDAVPNLI 447 (618)
T ss_dssp HHHHHHCCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTGGGSCSSHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHhccchhHHHHHHHHH
Confidence 223221 124566777788877667777666554
No 71
>3r1f_A ESX-1 secretion-associated regulator ESPR; helix-turn-helix, transcription factor, helix-turn-helix transcription factor; 2.50A {Mycobacterium tuberculosis}
Probab=25.04 E-value=84 Score=25.03 Aligned_cols=97 Identities=14% Similarity=0.210 Sum_probs=52.2
Q ss_pred CCCChHHHHHHHH--------HHHHHhhcCCCchhhhhHHHHHHHHHHHHHHHhhhccCCCCCCcHHHHHHHHHHHHhhc
Q 023043 8 KPRTPVDIVRQTR--------DLIIYANRSADVRESKREDKMAELCKNIRELKSILYGNSESEPVSEACAQLTAEFFREN 79 (288)
Q Consensus 8 ~~k~P~elVr~l~--------e~l~~L~~~~~~~~~K~~~k~eei~K~L~~mK~il~G~~e~~p~~e~~~qLa~ei~~~d 79 (288)
++-|-.|+.+.+. ..+..++.+.. .... .+.+..|++++.-=-..+.|+...++..+. .++..++ +..
T Consensus 25 ~~~T~~elA~~~~~~G~~is~s~is~~E~G~r-~~Ps-~~~l~~iA~~f~V~~~yl~~~~~~~~~~~e-l~ll~~~-rd~ 100 (135)
T 3r1f_A 25 GPHTSAEVIAALKAEGITMSAPYLSQLRSGNR-TNPS-GATMAALANFFRIKAAYFTDDEYYEKLDKE-LQWLCTM-RDD 100 (135)
T ss_dssp CCCCHHHHHHHHHTTTCCCCHHHHHHHHHTSS-CCCC-HHHHHHHHHHHTSCTHHHHCHHHHHHHHHH-HHHHHHT-TST
T ss_pred CCCCHHHHHHHHcccCCCcCHHHHHHHHCCCC-CCCC-HHHHHHHHHHhCCCHHHHcCCcchhhHHHH-HHHHHHH-hhh
Confidence 4567788887764 55777765321 0111 123567888777666666664321111111 1222222 223
Q ss_pred hHHHHHhhCCCCChhhhhhHHHHHHHHhh
Q 023043 80 TLRLLITCLPKLNLEARKDATQVVANLQR 108 (288)
Q Consensus 80 ll~~Li~~l~~L~fE~RKdv~~If~~llr 108 (288)
-+..+......|+=|+++.+..+...+.+
T Consensus 101 ~v~~l~~r~~~Ls~e~~~~l~~ii~~l~~ 129 (135)
T 3r1f_A 101 GVRRIAQRAHGLPSAAQQKVLDRIDELRR 129 (135)
T ss_dssp THHHHHHHHTSCCHHHHHHHHHHHHHHC-
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 33444445557888888888888877654
No 72
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=22.67 E-value=5e+02 Score=24.67 Aligned_cols=187 Identities=10% Similarity=0.090 Sum_probs=106.7
Q ss_pred hchHHHHHhhCCCCChhhhhhHHHHHHHHhhhcccCccchhhHhhc-C--HhHHHHHHHhccCchhhhhHHHHHHHHHH-
Q 023043 78 ENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEA-N--IDLLDILIAGYENTDMALHYGAMLRECIR- 153 (288)
Q Consensus 78 ~dll~~Li~~l~~L~fE~RKdv~~If~~llr~~~~~r~p~v~Yl~~-~--peil~~L~~gY~~~dial~~G~mLRecik- 153 (288)
.+.++.|+..|..=+-+.+.+++....+|-.. .....-+.+.. . |-++..|.++ .++++--.+-..|+.+..
T Consensus 242 ~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~---~~~~~k~~I~~~GaI~~LV~lLl~s-~~~~v~~~A~~aL~nLs~~ 317 (458)
T 3nmz_A 242 KGCMRALVAQLKSESEDLQQVIASVLRNLSWR---ADVNSKKTLREVGSVKALMECALEV-KKESTLKSVLSALWNLSAH 317 (458)
T ss_dssp HHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSS---CCHHHHHHHHHTTHHHHHHHHHTTC-CSHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcC---CCHHHHHHHHHcCCHHHHHHHHhcC-CCHHHHHHHHHHHHHHccC
Confidence 34577777777766667777777666665321 01111122322 1 3344433332 233443333345555554
Q ss_pred HHHHHH-HHhcchhhHhhhhhccCCCc----hhhhhHHHHHHHHH---hhChhHHHHHHHhhHHHHHHHHhHhhccCCCc
Q 023043 154 HQSVAR-YVLESQHMKKFFDYIQLPNF----DIAADAAATFKELL---TRHKSTVAEFLSKNYDWFFAEYNSKLLESSNY 225 (288)
Q Consensus 154 ~e~la~-~iL~~~~f~~fF~yv~~~~F----diasDAf~TfkelL---t~Hk~lvaefl~~nyd~Ff~~yn~~Ll~s~NY 225 (288)
.+.... ++.....+--+.+.+..+.= +|..+|..+++-|= +.+........+.+. +... -.||.+++.
T Consensus 318 ~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~---i~~L-v~LL~~~~~ 393 (458)
T 3nmz_A 318 CTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNC---LQTL-LQHLKSHSL 393 (458)
T ss_dssp CHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTH---HHHH-HHHSSCSCH
T ss_pred CHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHccc---HHHH-HHHHcCCCh
Confidence 222222 22245555555555543332 46666666666543 356655555555542 3444 378999999
Q ss_pred eehhchhhHHHHHhc-cCCchHHHHHhcCChhhHHHHHHHhhCCCCCccccc
Q 023043 226 ITRRQAVKLLGDILL-DRSNSVVMTRYVSSRENLRILMNLLRQEYPDRSISC 276 (288)
Q Consensus 226 VTkRQSLKLLgelLl-dr~N~~vM~rYi~~~~NLKl~M~LL~d~sknIQ~EA 276 (288)
-+++++...|+.+-. ++.|. .+|-+..-+..+..||++++..++-+|
T Consensus 394 ~v~~~A~~aL~nLa~~~~~~~----~~i~~~G~I~~Lv~LL~s~~~~v~~~A 441 (458)
T 3nmz_A 394 TIVSNACGTLWNLSARNPKDQ----EALWDMGAVSMLKNLIHSKHKMIAMGS 441 (458)
T ss_dssp HHHHHHHHHHHHHHSSCHHHH----HHHHHHTHHHHHHTTTTCSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHH----HHHHHCCCHHHHHHHHhCCCHHHHHHH
Confidence 999999999999974 44443 344455668888899998888877665
No 73
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=21.27 E-value=27 Score=26.54 Aligned_cols=45 Identities=16% Similarity=0.251 Sum_probs=0.0
Q ss_pred hhccCCCceehhchhhHHHHHhccCCchHHHHHhcCChhhHHHHHHHhhCCCCCccccc
Q 023043 218 KLLESSNYITRRQAVKLLGDILLDRSNSVVMTRYVSSRENLRILMNLLRQEYPDRSISC 276 (288)
Q Consensus 218 ~Ll~s~NYVTkRQSLKLLgelLldr~N~~vM~rYi~~~~NLKl~M~LL~d~sknIQ~EA 276 (288)
.+|.+++.-.|+.++..||. +.+++-+..+..+|+|++..++.+|
T Consensus 49 ~~L~d~~~~vR~~A~~aL~~--------------~~~~~a~~~L~~~L~d~~~~VR~~A 93 (131)
T 1te4_A 49 ESLSNEDWRIRGAAAWIIGN--------------FQDERAVEPLIKLLEDDSGFVRSGA 93 (131)
T ss_dssp HGGGCSCHHHHHHHHHHHGG--------------GCSHHHHHHHHHHHHHCCTHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHh--------------cCCHHHHHHHHHHHcCCCHHHHHHH
No 74
>2prs_A High-affinity zinc uptake system protein ZNUA; protein consists of two (beta/ALFA)4 domains, metal transport; 1.70A {Escherichia coli} PDB: 2osv_A 2ps0_A 2ps3_A 2ps9_A 2ogw_A 2xy4_A* 2xqv_A* 2xh8_A
Probab=20.63 E-value=1.9e+02 Score=25.41 Aligned_cols=72 Identities=8% Similarity=0.176 Sum_probs=40.8
Q ss_pred CCChHHHHHHHHHHHHHhhcCCCchhhhhH----HHHHHHHHHHHHHHh------hh------------cc---------
Q 023043 9 PRTPVDIVRQTRDLIIYANRSADVRESKRE----DKMAELCKNIRELKS------IL------------YG--------- 57 (288)
Q Consensus 9 ~k~P~elVr~l~e~l~~L~~~~~~~~~K~~----~k~eei~K~L~~mK~------il------------~G--------- 57 (288)
|+.-..+|+.+.+.|.+++......=.++. ++++++.+.+.+... ++ ||
T Consensus 122 p~~~~~~a~~I~~~L~~~dP~~a~~y~~N~~~~~~~L~~Ld~~~~~~l~~~~~~~~v~~H~af~Yf~~~yGl~~~~~~~~ 201 (284)
T 2prs_A 122 PEIARATAVAIHGKLVELMPQSRAKLDANLKDFEAQLASTETQVGNELAPLKGKGYFVFHDAYGYFEKQFGLTPLGHFTV 201 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTCCEEEEESCCHHHHHHHTCCCCEEEES
T ss_pred HHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEECccHHHHHHHCCCeEeEeecc
Confidence 334557899999999999853210001111 112333333333211 11 12
Q ss_pred CCCCCCcHHHHHHHHHHHHhhch
Q 023043 58 NSESEPVSEACAQLTAEFFRENT 80 (288)
Q Consensus 58 ~~e~~p~~e~~~qLa~ei~~~dl 80 (288)
.++.+|+|.++++|.+.+-..++
T Consensus 202 ~~~~eps~~~l~~l~~~ik~~~v 224 (284)
T 2prs_A 202 NPEIQPGAQRLHEIRTQLVEQKA 224 (284)
T ss_dssp STTSCCCHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCHHHHHHHHHHHHHcCC
Confidence 34678999999999988866653
No 75
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C
Probab=20.10 E-value=2.7e+02 Score=25.10 Aligned_cols=85 Identities=11% Similarity=0.006 Sum_probs=50.9
Q ss_pred ChHHHHHHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHHHHHhhhccCCCCCCcHHHHHHHHHHHHhh---chHHHHHhh
Q 023043 11 TPVDIVRQTRDLIIYANRSADVRESKREDKMAELCKNIRELKSILYGNSESEPVSEACAQLTAEFFRE---NTLRLLITC 87 (288)
Q Consensus 11 ~P~elVr~l~e~l~~L~~~~~~~~~K~~~k~eei~K~L~~mK~il~G~~e~~p~~e~~~qLa~ei~~~---dll~~Li~~ 87 (288)
+..++++.+.+.|.++...+- . .+|+.+.-.+++.-+....+ .....+..++...... +.+......
T Consensus 323 ~~~~~~~~i~~~l~~l~~~g~-t-------~~el~~ak~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 392 (445)
T 3ami_A 323 TIAQLETDLRAQVRDIAAKGV-T-------EAELSRVKSQMVAGKVYEQD--SLMGQATQIGGLEVLGLSWRDDDRFYQQ 392 (445)
T ss_dssp CHHHHHHHHHHHHHHHHHHCC-C-------HHHHHHHHHHHHHHHHHTTT--SHHHHHHHHHHHHTTTCCTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCC-C-------HHHHHHHHHHHHHHHHHHhh--CHHHHHHHHHHHHHcCCChHHHHHHHHH
Confidence 588899999999988865321 1 14666655555544432222 2234455566555332 446666777
Q ss_pred CCCCChhhhhhHHHHHHHHhh
Q 023043 88 LPKLNLEARKDATQVVANLQR 108 (288)
Q Consensus 88 l~~L~fE~RKdv~~If~~llr 108 (288)
+..++-| ||..+....+.
T Consensus 393 i~~vt~~---dv~~~a~~~l~ 410 (445)
T 3ami_A 393 LRSVTAA---EVKAAAARLLT 410 (445)
T ss_dssp HHTCCHH---HHHHHHHTTSC
T ss_pred HHcCCHH---HHHHHHHHHcC
Confidence 7777554 78887776664
No 76
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=20.06 E-value=5e+02 Score=23.66 Aligned_cols=178 Identities=12% Similarity=0.058 Sum_probs=99.4
Q ss_pred hhchHHHHHhhCCCCChhhhhhHHHHHHHHhhhcccCccchhhHhhcCHhHHHHHHHhccCchhh-----h-hHHHHHHH
Q 023043 77 RENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYENTDMA-----L-HYGAMLRE 150 (288)
Q Consensus 77 ~~dll~~Li~~l~~L~fE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~peil~~L~~gY~~~dia-----l-~~G~mLRe 150 (288)
...+++.|+..+..=++..|..+......+.+.- +.. . -.|.++..++.+-.+++-. . ..|.+...
T Consensus 400 ~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~-~~~-----~--~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~ 471 (588)
T 1b3u_A 400 SQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQL-GVE-----F--FDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEK 471 (588)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHH-CGG-----G--CCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHc-CHH-----H--HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHH
Confidence 3456777777777778888888777777765422 211 1 1467788887776655321 1 22222221
Q ss_pred HHHHHHHHHHHhcchhhHhhhhhccCCCchhhhhHHHHHHHHHhhChhHHHHHHHhhHHHHHHHHhHhhccCCCceehhc
Q 023043 151 CIRHQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQ 230 (288)
Q Consensus 151 cik~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefl~~nyd~Ff~~yn~~Ll~s~NYVTkRQ 230 (288)
+..+... +..+-.+.+..+.++..+-.-|..++..+..... .++ ..+.++...- +++..++--.|..
T Consensus 472 -~~~~~~~-----~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~---~~~---~~~~~~~~l~-~~l~d~~~~Vr~~ 538 (588)
T 1b3u_A 472 -FGKEWAH-----ATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCG---QDI---TTKHMLPTVL-RMAGDPVANVRFN 538 (588)
T ss_dssp -HCHHHHH-----HHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHH---HHH---HHHHTHHHHH-HGGGCSCHHHHHH
T ss_pred -hCchhHH-----HHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcC---HHH---HHHHHHHHHH-hhCCCCCchHHHH
Confidence 1111111 1111222334566777776666666666543211 111 1234444553 6788888889999
Q ss_pred hhhHHHHHhccCCchHHHHHhcCChhhHHHHHHHhhCCCCCcccccceeee
Q 023043 231 AVKLLGDILLDRSNSVVMTRYVSSRENLRILMNLLRQEYPDRSISCFQAVC 281 (288)
Q Consensus 231 SLKLLgelLldr~N~~vM~rYi~~~~NLKl~M~LL~d~sknIQ~EAFhVf~ 281 (288)
+++.||++...= .-.. +. +.-+..+..++.|+...++.-|...+.
T Consensus 539 a~~~l~~l~~~~-~~~~----~~-~~~~p~l~~l~~d~d~~vr~~a~~al~ 583 (588)
T 1b3u_A 539 VAKSLQKIGPIL-DNST----LQ-SEVKPILEKLTQDQDVDVKYFAQEALT 583 (588)
T ss_dssp HHHHHHHHGGGS-CHHH----HH-HHHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-chhh----hH-HHHHHHHHHHcCCCchhHHHHHHHHHH
Confidence 999999998321 1111 11 334455666788888888877765544
Done!