Query 023044
Match_columns 288
No_of_seqs 142 out of 202
Neff 4.0
Searched_HMMs 46136
Date Fri Mar 29 08:02:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023044.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023044hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04720 DUF506: Protein of un 100.0 1.6E-67 3.5E-72 475.7 21.0 207 10-219 1-218 (218)
2 TIGR01615 A_thal_3542 uncharac 100.0 5.2E-62 1.1E-66 410.8 14.6 131 91-221 1-131 (131)
3 PF00797 Acetyltransf_2: N-ace 91.7 0.54 1.2E-05 41.9 6.5 55 90-150 52-109 (240)
4 PRK15047 N-hydroxyarylamine O- 86.9 2.1 4.5E-05 40.7 6.9 55 90-150 72-128 (281)
5 PF08742 C8: C8 domain; Inter 84.6 1.2 2.7E-05 33.2 3.4 62 141-207 10-71 (74)
6 PF14475 Mso1_Sec1_bdg: Sec1-b 73.3 4 8.6E-05 29.0 2.8 20 184-203 21-40 (41)
7 smart00460 TGc Transglutaminas 65.6 37 0.0008 23.9 6.6 51 90-146 12-67 (68)
8 PRK14675 hypothetical protein; 60.2 54 0.0012 27.7 7.6 82 93-204 17-98 (125)
9 PF08774 VRR_NUC: VRR-NUC doma 56.0 15 0.00032 28.7 3.4 28 85-112 73-100 (100)
10 PF01841 Transglut_core: Trans 52.8 27 0.00058 26.8 4.3 52 89-145 56-113 (113)
11 COG2162 NhoA Arylamine N-acety 45.8 62 0.0013 31.4 6.4 59 90-154 73-134 (275)
12 cd00523 archeal_HJR Holliday j 43.3 1.1E+02 0.0023 26.0 6.8 50 90-150 8-57 (123)
13 PHA01753 Holliday junction res 42.2 1.1E+02 0.0024 26.3 6.7 51 89-150 9-59 (121)
14 smart00832 C8 C8 domain. This 41.9 22 0.00049 27.3 2.3 63 140-207 9-73 (76)
15 PRK08462 biotin carboxylase; V 37.7 93 0.002 30.5 6.4 113 87-204 12-136 (445)
16 TIGR00514 accC acetyl-CoA carb 37.1 73 0.0016 31.4 5.6 114 88-204 11-134 (449)
17 COG0439 AccC Biotin carboxylas 36.8 77 0.0017 32.4 5.8 113 90-204 13-134 (449)
18 TIGR01205 D_ala_D_alaTIGR D-al 34.9 1.4E+02 0.0029 27.4 6.7 47 159-206 80-126 (315)
19 PRK08463 acetyl-CoA carboxylas 33.9 59 0.0013 32.6 4.5 45 160-205 90-134 (478)
20 PF01927 Mut7-C: Mut7-C RNAse 33.8 32 0.0007 29.3 2.3 18 92-109 10-27 (147)
21 PF15645 Tox-PLDMTX: Dermonecr 33.6 1.6E+02 0.0035 25.6 6.5 72 90-179 10-84 (135)
22 PRK12413 phosphomethylpyrimidi 30.6 1.1E+02 0.0024 27.3 5.2 46 138-183 97-145 (253)
23 PRK08591 acetyl-CoA carboxylas 30.3 91 0.002 30.5 5.0 44 159-203 90-133 (451)
24 KOG1282 Serine carboxypeptidas 29.9 22 0.00047 36.4 0.7 36 241-284 57-96 (454)
25 COG5005 Mu-like prophage prote 29.5 55 0.0012 28.8 3.0 58 157-216 9-67 (140)
26 PRK07178 pyruvate carboxylase 28.9 95 0.0021 31.1 5.0 45 160-205 90-134 (472)
27 PRK10446 ribosomal protein S6 26.4 2.3E+02 0.0049 26.3 6.7 42 161-205 77-119 (300)
28 PRK01372 ddl D-alanine--D-alan 26.0 4.1E+02 0.0089 24.2 8.2 94 92-207 26-120 (304)
29 PRK15068 tRNA mo(5)U34 methylt 25.8 17 0.00038 34.7 -0.8 53 157-210 39-96 (322)
30 COG3349 Uncharacterized conser 25.3 68 0.0015 33.3 3.3 72 94-185 15-86 (485)
31 PF00450 Peptidase_S10: Serine 25.3 26 0.00057 32.9 0.3 15 270-284 49-63 (415)
32 cd01173 pyridoxal_pyridoxamine 25.1 1.3E+02 0.0027 26.9 4.6 46 138-183 103-152 (254)
33 PF12852 Cupin_6: Cupin 24.3 1.1E+02 0.0023 26.3 3.8 41 149-191 115-160 (186)
34 PRK14569 D-alanyl-alanine synt 23.7 4.4E+02 0.0096 24.5 8.1 45 160-205 74-118 (296)
35 TIGR01369 CPSaseII_lrg carbamo 23.3 2.2E+02 0.0048 31.9 6.9 106 93-207 31-149 (1050)
36 COG4633 Plastocyanin domain co 22.3 62 0.0014 31.1 2.2 54 97-150 169-234 (272)
37 PRK05586 biotin carboxylase; V 21.9 1.4E+02 0.003 29.5 4.6 44 159-203 90-133 (447)
38 PRK08654 pyruvate carboxylase 21.0 2E+02 0.0044 29.3 5.6 46 159-205 90-135 (499)
No 1
>PF04720 DUF506: Protein of unknown function (DUF506) ; InterPro: IPR006502 This family of uncharacterised plant proteins are defined by a region found toward the C terminus. This region is strongly conserved (greater than 30 % sequence identity between most pairs of members) but flanked by highly divergent regions including stretches of low-complexity sequence.
Probab=100.00 E-value=1.6e-67 Score=475.71 Aligned_cols=207 Identities=40% Similarity=0.747 Sum_probs=171.9
Q ss_pred HHHHHHHHhhCCCCCCCC-C--C---CCCccccccccC--CCchhHHHHHHHHhcCCChHHHH---HHHHHHHHHHHhhc
Q 023044 10 LVQMVHDFIESSESSSSS-S--P---SSSKCLLSLQHH--HQPSYFLTLQEILRSGNTEAEKE---VLERVKKHLVMRSR 78 (288)
Q Consensus 10 La~MV~dFiE~~~s~~~~-s--~---~ss~~~~~~~~~--~~~~~~~~Lq~il~~~~~~~E~~---ll~~v~~~l~~~~~ 78 (288)
|++||++|||++..+... + . .++.+..+.+.. ....+.+.||.||.+. +..|+. |+++|.++ +...
T Consensus 1 Ls~mV~~FlE~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~e~l~~Ll~~~-~~~e~~~~~l~~~v~~~--v~~~ 77 (218)
T PF04720_consen 1 LSDMVQGFLEEEESSAPSFSFSGNGDDSSDEDSDSDSGSSESAEFWEELQELLQCI-SERESSRRRLLADVRRA--VEEA 77 (218)
T ss_pred CHHHHHHHhccCCcccccccccccCCCCccccccccCcccchHHHHHHHHHHHhcc-ccccchHHHHHHHHHHH--HHHH
Confidence 789999999998443322 1 1 111121111010 1123567889999988 566766 99999988 4333
Q ss_pred cccccccchhhHHHHHHHHHHhCCCceEEeeecCCCCCCCCCCccceEEEEEccCCCCCCeEEEEecCcccceeeccCcH
Q 023044 79 RDGVLLKSSNGLKKWLVRKLKMDGFNASLCHTSWATSSGCPAGDYEYIDIMVEDEQTEEPIRLIVDIDFKSQFELARPTQ 158 (288)
Q Consensus 79 ~~~~~~~~~~~lrr~v~~~Lr~~GydAaiCkSrW~~s~~~paG~yEYIdVi~~~~~~~~~~r~IVD~dFR~qFeIArpT~ 158 (288)
......++++|+||.||++||.+||||+||||+|++++++|+|+||||||++.+++.++.+|||||||||+||||||||+
T Consensus 78 ~~~~~~~~~~~~rr~v~~~Lr~~GydAaiCkS~W~~s~~~p~g~yeyIdV~~~~~~~~~~~r~IVd~~fr~~FeiArpt~ 157 (218)
T PF04720_consen 78 KDEIKRGCRSCLRRSVMSRLRALGYDAAICKSRWESSGGIPAGEYEYIDVIVSGSSSGKSERYIVDPDFRSQFEIARPTP 157 (218)
T ss_pred HhhhcccchHHHHHHHHHHHHhCCCCEEEEEecCCCCCCCCCcceeEEEEEECCCCCCcceeEEEecchHhCeeecCCCH
Confidence 32111268999999999999999999999999999999999999999999999876778999999999999999999999
Q ss_pred HHHHHHhhCCCceeeChHHHHHHHHHHHHHHHHHHHHcCCCCCCCCchhhHhhhccCCCcc
Q 023044 159 AYKELTNILPSIFVGQEEKLNKIISLLCSAAKQSLKERGLHIPPWRTSTYMHSKWLSAGCQ 219 (288)
Q Consensus 159 ~Y~~ll~~LP~vFVG~~~rL~~lV~~mc~a~k~S~k~~Gm~lPPWRk~~ym~sKWl~~~~~ 219 (288)
+|++||+.||.||||+.++|++||++||+|||+|||++|||||||||.+|||+|||++|+|
T Consensus 158 ~Y~~ll~~lP~vfVG~~~~L~~iV~~~c~a~k~s~k~~g~~lPPWR~~~ym~aKW~~~y~R 218 (218)
T PF04720_consen 158 EYAALLAALPEVFVGTPERLKQIVRLMCDAAKRSFKERGMHLPPWRKNSYMQAKWLSPYKR 218 (218)
T ss_pred HHHHHHHhCCCceEcCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCchHHHHHhccCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999876
No 2
>TIGR01615 A_thal_3542 uncharacterized plant-specific domain TIGR01615. of a number of uncharacterized plant proteins. The domain is strongly conserved (greater than 30 % sequence identity between most pairs of members) but flanked by highly divergent regions including stretches of low-complexity sequence.
Probab=100.00 E-value=5.2e-62 Score=410.84 Aligned_cols=131 Identities=43% Similarity=0.932 Sum_probs=126.4
Q ss_pred HHHHHHHHHhCCCceEEeeecCCCCCCCCCCccceEEEEEccCCCCCCeEEEEecCcccceeeccCcHHHHHHHhhCCCc
Q 023044 91 KKWLVRKLKMDGFNASLCHTSWATSSGCPAGDYEYIDIMVEDEQTEEPIRLIVDIDFKSQFELARPTQAYKELTNILPSI 170 (288)
Q Consensus 91 rr~v~~~Lr~~GydAaiCkSrW~~s~~~paG~yEYIdVi~~~~~~~~~~r~IVD~dFR~qFeIArpT~~Y~~ll~~LP~v 170 (288)
||.||++||.+||||+||||+|++++++|+|+||||||++.+.++++.+|||||+|||+||||||||++|++||+.||.|
T Consensus 1 ~r~v~~~Lr~~Gy~AaiCkS~W~~s~~~p~G~yeyidV~~~~~~~~~~~R~iVd~dFr~~FeiARpt~~Y~~ll~~LP~v 80 (131)
T TIGR01615 1 RRIVMSLLRSLGYDAAICKSKWDSSGDIPAGKYEYIDVVDGDGSKKQEMRVIIDLDFRSEFEIARPTEEYKRLLESLPEV 80 (131)
T ss_pred ChhHHHHHHHCCCCeeeEEeecCCCCCCCCCceeeEEEEecCCCCCCcceEEEeccchhhceecCCCHHHHHHHHhCCcc
Confidence 57899999999999999999999999999999999999998765567899999999999999999999999999999999
Q ss_pred eeeChHHHHHHHHHHHHHHHHHHHHcCCCCCCCCchhhHhhhccCCCcccc
Q 023044 171 FVGQEEKLNKIISLLCSAAKQSLKERGLHIPPWRTSTYMHSKWLSAGCQKC 221 (288)
Q Consensus 171 FVG~~~rL~~lV~~mc~a~k~S~k~~Gm~lPPWRk~~ym~sKWl~~~~~~~ 221 (288)
|||+.++|++||++||+|||+|||++|||||||||.+|||+|||++|+|++
T Consensus 81 FVG~~~rL~~iV~~mc~Aak~Slk~~gmhlPPWRk~~ym~aKWl~~~~R~~ 131 (131)
T TIGR01615 81 FVGTTERLRQLVRLMCDAAKKSLKKKGMPLPPWRKNRYMQSKWLGPYKRTS 131 (131)
T ss_pred eECCHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCchHHHHHhccCCccCCC
Confidence 999999999999999999999999999999999999999999999999873
No 3
>PF00797 Acetyltransf_2: N-acetyltransferase; InterPro: IPR001447 Arylamine N-acetyltransferase (NAT) is a cytosolic enzyme of approximately 30 kDa. It facilitates the transfer of an acetyl group from acetyl coenzyme A on to a wide range of arylamine, N-hydroxyarylamines and hydrazines. Acetylation of these compounds generally results in inactivation. NAT is found in many species from Mycobacteria (Mycobacterium tuberculosis, Mycobacterium smegmatis etc) to Homo sapiens (Human). It was the first enzyme to be observed to have polymorphic activity amongst human individuals. NAT is responsible for the inactivation of Isoniazid (a drug used to treat tuberculosis) in humans. The NAT protein has also been shown to be involved in the breakdown of folic acid. NAT catalyses the reaction: Acetyl-coA + arylamine = coA + N-acetylarylamine NAT is the target of a common genetic polymorphism of clinical relevance in humans. The N-acetylation polymorphism is determined by low or high NAT activity in liver. NAT has been implicated in the action and toxicity of amine-containing drugs, and in the susceptibility to cancer and systematic lupus erythematosus. Two highly similar human genes for NAT, termed NAT1 and NAT2, encode genetically invariant and variant NAT proteins, respectively. ; GO: 0016407 acetyltransferase activity, 0008152 metabolic process; PDB: 1W6F_A 1W5R_A 1GX3_D 2PQT_A 2IJA_A 1W4T_A 2BSZ_B 3D9W_B 3LTW_A 3LNB_A ....
Probab=91.66 E-value=0.54 Score=41.91 Aligned_cols=55 Identities=18% Similarity=0.325 Sum_probs=40.7
Q ss_pred HHHHHHHHHHhCCCceEEeeec-CCCCCC--CCCCccceEEEEEccCCCCCCeEEEEecCcccc
Q 023044 90 LKKWLVRKLKMDGFNASLCHTS-WATSSG--CPAGDYEYIDIMVEDEQTEEPIRLIVDIDFKSQ 150 (288)
Q Consensus 90 lrr~v~~~Lr~~GydAaiCkSr-W~~s~~--~paG~yEYIdVi~~~~~~~~~~r~IVD~dFR~q 150 (288)
+...+...|++.||++.++..+ +..... .+.+.|--|-|.+. +.+|+||+.|=..
T Consensus 52 lN~lf~~lL~~lGf~v~~~~arv~~~~~~~~~~~~~H~~liV~~~------~~~ylvDvGfG~~ 109 (240)
T PF00797_consen 52 LNGLFYWLLRELGFDVTLVSARVYSPGGPDYWPPRTHLVLIVTLD------GERYLVDVGFGGP 109 (240)
T ss_dssp HHHHHHHHHHHCT-EEEEEEEEEETTTTTCCSSSEEEEEEEEEET------TEEEEE-SSSTTC
T ss_pred HHHHHHHHHHHCCCeEEEEEEEEEeCCCCCCCCCCceEEEEEEEC------CEEEEEeccCCCc
Confidence 4667899999999999999985 322222 46788988888775 3499999999876
No 4
>PRK15047 N-hydroxyarylamine O-acetyltransferase; Provisional
Probab=86.90 E-value=2.1 Score=40.66 Aligned_cols=55 Identities=20% Similarity=0.253 Sum_probs=42.2
Q ss_pred HHHHHHHHHHhCCCceEEeeec--CCCCCCCCCCccceEEEEEccCCCCCCeEEEEecCcccc
Q 023044 90 LKKWLVRKLKMDGFNASLCHTS--WATSSGCPAGDYEYIDIMVEDEQTEEPIRLIVDIDFKSQ 150 (288)
Q Consensus 90 lrr~v~~~Lr~~GydAaiCkSr--W~~s~~~paG~yEYIdVi~~~~~~~~~~r~IVD~dFR~q 150 (288)
+...+...|+++||++.....+ |......++..|-.+-|.+. +.+|+||+.|-..
T Consensus 72 ~N~Lf~~~L~~LGF~v~~~~arV~~~~~~~~~~~tH~~l~V~i~------~~~yLvDVGFG~~ 128 (281)
T PRK15047 72 QNGLFERVLRELGFNVRSLLGRVVLSNPPALPPRTHRLLLVELE------GEKWIADVGFGGQ 128 (281)
T ss_pred HHHHHHHHHHHcCCcEEEEEEEEEecCCCCCCCcCcEEEEEEEC------CeeEEEEecCCCC
Confidence 4667889999999999987775 43333346678999888775 3499999999863
No 5
>PF08742 C8: C8 domain; InterPro: IPR014853 The proteins in this entry contained a domain rich in positionally conserved cysteine residues. Most proteins contains 7 or 8 cysteine residues. The domain is found in disease-related proteins including von Willebrand factor, Alpha tectorin, Zonadhesin and Mucin. It is often found on proteins containing IPR001846 from INTERPRO and IPR002919 from INTERPRO.
Probab=84.57 E-value=1.2 Score=33.15 Aligned_cols=62 Identities=19% Similarity=0.406 Sum_probs=43.5
Q ss_pred EEEecCcccceeeccCcHHHHHHHhhCCCceeeChHHHHHHHHHHHHHHHHHHHHcCCCCCCCCchh
Q 023044 141 LIVDIDFKSQFELARPTQAYKELTNILPSIFVGQEEKLNKIISLLCSAAKQSLKERGLHIPPWRTST 207 (288)
Q Consensus 141 ~IVD~dFR~qFeIArpT~~Y~~ll~~LP~vFVG~~~rL~~lV~~mc~a~k~S~k~~Gm~lPPWRk~~ 207 (288)
+|.|+.|+.=+.+.-|++-|+..+..+=.. -+.. ..+-..|.+-++.+ +..|..+++||+..
T Consensus 10 ~l~~~~F~~C~~~v~~~~f~~~C~~d~C~~-~~~~---~~~C~~l~~Ya~~C-~~~g~~~~~WR~~~ 71 (74)
T PF08742_consen 10 ILLDPEFAPCHSVVDPDPFYEACVYDMCAC-PGSQ---QCLCEALSAYAREC-QRAGICVGDWRTPT 71 (74)
T ss_pred HHcCchhhhhcccCccHHHHHHHHHHHcCC-CCCc---chhhHHHHHHHHHH-HHCcCCCCCCCCcC
Confidence 456888999999999999999988766442 2222 23333444444444 67899999999874
No 6
>PF14475 Mso1_Sec1_bdg: Sec1-binding region of Mso1
Probab=73.33 E-value=4 Score=29.03 Aligned_cols=20 Identities=20% Similarity=0.509 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHcCCCCCCC
Q 023044 184 LLCSAAKQSLKERGLHIPPW 203 (288)
Q Consensus 184 ~mc~a~k~S~k~~Gm~lPPW 203 (288)
++|.++++-.+++|.++|+|
T Consensus 21 ~v~r~l~~yY~~k~~~~P~W 40 (41)
T PF14475_consen 21 HVHRVLRKYYTEKGRPFPGW 40 (41)
T ss_pred HHHHHHHHHHHHcCCCCCCc
Confidence 68999999999999999999
No 7
>smart00460 TGc Transglutaminase/protease-like homologues. Transglutaminases are enzymes that establish covalent links between proteins. A subset of transglutaminase homologues appear to catalyse the reverse reaction, the hydrolysis of peptide bonds. Proteins with this domain are both extracellular and intracellular, and it is likely that the eukaryotic intracellular proteins are involved in signalling events.
Probab=65.64 E-value=37 Score=23.90 Aligned_cols=51 Identities=16% Similarity=0.069 Sum_probs=35.9
Q ss_pred HHHHHHHHHHhCCCceEEeee-cCCCCCC----CCCCccceEEEEEccCCCCCCeEEEEecC
Q 023044 90 LKKWLVRKLKMDGFNASLCHT-SWATSSG----CPAGDYEYIDIMVEDEQTEEPIRLIVDID 146 (288)
Q Consensus 90 lrr~v~~~Lr~~GydAaiCkS-rW~~s~~----~paG~yEYIdVi~~~~~~~~~~r~IVD~d 146 (288)
+=..++..||.+|+.|.++.. .+..... -+...|.+++|-+. +.-+.+||.
T Consensus 12 ~a~l~~~llr~~GIpar~v~g~~~~~~~~~~~~~~~~~H~W~ev~~~------~~W~~~D~~ 67 (68)
T smart00460 12 FAALFVALLRSLGIPARVVSGYLKAPDTIGGLRSIWEAHAWAEVYLE------GGWVPVDPT 67 (68)
T ss_pred HHHHHHHHHHHCCCCeEEEeeeecCCCCCcccccCCCcEEEEEEEEC------CCeEEEeCC
Confidence 344678899999999999987 3322221 13577999998764 348888885
No 8
>PRK14675 hypothetical protein; Provisional
Probab=60.20 E-value=54 Score=27.73 Aligned_cols=82 Identities=21% Similarity=0.216 Sum_probs=51.7
Q ss_pred HHHHHHHhCCCceEEeeecCCCCCCCCCCccceEEEEEccCCCCCCeEEEEecCcccceeeccCcHHHHHHHhhCCCcee
Q 023044 93 WLVRKLKMDGFNASLCHTSWATSSGCPAGDYEYIDIMVEDEQTEEPIRLIVDIDFKSQFELARPTQAYKELTNILPSIFV 172 (288)
Q Consensus 93 ~v~~~Lr~~GydAaiCkSrW~~s~~~paG~yEYIdVi~~~~~~~~~~r~IVD~dFR~qFeIArpT~~Y~~ll~~LP~vFV 172 (288)
..+..|+..||. |....|.. + |-.||+|.... ..-++||+-.|..-..+.|-.. |
T Consensus 17 ~A~~~L~~~G~~--il~rn~r~----~---~GEIDlIa~d~----~~lvFVEVK~R~~~~~g~~~~a------------V 71 (125)
T PRK14675 17 IAVTYLKGLRYK--IVERNFRC----R---CGEIDIIARDG----KTLVFVEVKTRKNYAYGVPQLA------------V 71 (125)
T ss_pred HHHHHHHHCCCE--EEEEEEeC----C---CCeEEEEEEeC----CEEEEEEEEeccCCCCcChHHc------------C
Confidence 578899999996 45667754 2 55799998743 4899999999976554444221 1
Q ss_pred eChHHHHHHHHHHHHHHHHHHHHcCCCCCCCC
Q 023044 173 GQEEKLNKIISLLCSAAKQSLKERGLHIPPWR 204 (288)
Q Consensus 173 G~~~rL~~lV~~mc~a~k~S~k~~Gm~lPPWR 204 (288)
.. .+.+ -|..+|+.-|.++++.-.|+|
T Consensus 72 ~~-~K~~----ri~~~A~~yL~~~~~~~~~~R 98 (125)
T PRK14675 72 TP-FKQR----QISKAALTWLAKKKLLDAEAR 98 (125)
T ss_pred CH-HHHH----HHHHHHHHHHHHCCCCCCCEE
Confidence 11 1122 455667777777665333443
No 9
>PF08774 VRR_NUC: VRR-NUC domain; InterPro: IPR014883 This entry contains proteins with the VRR-NUC domain. It is associated with members of the PD-(D/E)XK nuclease superfamily, which include the type III restriction modification enzymes, for example StyLTI: (P40815 from SWISSPROT).; GO: 0016788 hydrolase activity, acting on ester bonds
Probab=55.98 E-value=15 Score=28.73 Aligned_cols=28 Identities=21% Similarity=0.356 Sum_probs=23.5
Q ss_pred cchhhHHHHHHHHHHhCCCceEEeeecC
Q 023044 85 KSSNGLKKWLVRKLKMDGFNASLCHTSW 112 (288)
Q Consensus 85 ~~~~~lrr~v~~~Lr~~GydAaiCkSrW 112 (288)
++-+..++...+.|+..|+++.||.+.|
T Consensus 73 ~~ls~~Q~~~~~~l~~~G~~v~V~~~~~ 100 (100)
T PF08774_consen 73 DRLSPNQKEWIDKLREAGFRVAVCRSVE 100 (100)
T ss_pred CCcCHHHHHHHHHHHHCCCEEEEEEccC
Confidence 4556667778899999999999999987
No 10
>PF01841 Transglut_core: Transglutaminase-like superfamily; InterPro: IPR002931 This domain is found in many proteins known to have transglutaminase activity, i.e. which cross-link proteins through an acyl-transfer reaction between the gamma-carboxamide group of peptide-bound glutamine and the epsilon-amino group of peptide-bound lysine, resulting in a epsilon-(gamma-glutamyl)lysine isopeptide bond. Tranglutaminases have been found in a diverse range of species, from bacteria through to mammals. The enzymes require calcium binding and their activity leads to post-translational modification of proteins through acyl-transfer reactions, involving peptidyl glutamine residues as acyl donors and a variety of primary amines as acyl acceptors, with the generation of proteinase resistant isopeptide bonds []. Sequence conservation in this superfamily primarily involves three motifs that centre around conserved cysteine, histidine, and aspartate residues that form the catalytic triad in the structurally characterised transglutaminase, the human blood clotting factor XIIIa' []. On the basis of the experimentally demonstrated activity of the Methanobacterium phage psiM2 pseudomurein endoisopeptidase [], it is proposed that many, if not all, microbial homologs of the transglutaminases are proteases and that the eukaryotic transglutaminases have evolved from an ancestral protease []. A subunit of plasma Factor XIII revealed that each Factor XIIIA subunit is composed of four domains (termed N-terminal beta-sandwich, core domain (containing the catalytic and the regulatory sites), and C-terminal beta-barrels 1 and 2) and that two monomers assemble into the native dimer through the surfaces in domains 1 and 2, in opposite orientation. This organisation in four domains is highly conserved during evolution among transglutaminase isoforms [].; PDB: 2F4M_A 2F4O_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B ....
Probab=52.81 E-value=27 Score=26.78 Aligned_cols=52 Identities=10% Similarity=0.069 Sum_probs=33.9
Q ss_pred hHHHHHHHHHHhCCCceEEeeecCCCCC------CCCCCccceEEEEEccCCCCCCeEEEEec
Q 023044 89 GLKKWLVRKLKMDGFNASLCHTSWATSS------GCPAGDYEYIDIMVEDEQTEEPIRLIVDI 145 (288)
Q Consensus 89 ~lrr~v~~~Lr~~GydAaiCkSrW~~s~------~~paG~yEYIdVi~~~~~~~~~~r~IVD~ 145 (288)
.+-..++..||.+|+.|.+......... ......|-..+|-+++ +.-+.+||
T Consensus 56 ~~a~l~~allr~~Gipar~v~g~~~~~~~~~~~~~~~~~~H~w~ev~~~~-----~~W~~~Dp 113 (113)
T PF01841_consen 56 DYASLFVALLRALGIPARVVSGYVKGPDPDGDYSVDGNDNHAWVEVYLPG-----GGWIPLDP 113 (113)
T ss_dssp HHHHHHHHHHHHHT--EEEEEEEEEECSSTTCTSTSSEEEEEEEEEEETT-----TEEEEEET
T ss_pred HHHHHHHHHHhhCCCceEEEEEEcCCccccccccCCCCCCEEEEEEEEcC-----CcEEEcCC
Confidence 3455689999999999998876443221 2234568888887732 35888887
No 11
>COG2162 NhoA Arylamine N-acetyltransferase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=45.83 E-value=62 Score=31.40 Aligned_cols=59 Identities=24% Similarity=0.358 Sum_probs=46.2
Q ss_pred HHHHHHHHHHhCCCceEE--eeecCCCCCC-CCCCccceEEEEEccCCCCCCeEEEEecCcccceeec
Q 023044 90 LKKWLVRKLKMDGFNASL--CHTSWATSSG-CPAGDYEYIDIMVEDEQTEEPIRLIVDIDFKSQFELA 154 (288)
Q Consensus 90 lrr~v~~~Lr~~GydAai--CkSrW~~s~~-~paG~yEYIdVi~~~~~~~~~~r~IVD~dFR~qFeIA 154 (288)
+...+...|+++||+... |.=.|....+ .|.+.|.-+-|.+.+ +.+|+|..|=.+--.|
T Consensus 73 lNglf~~vL~~lGF~v~~l~arV~~g~~~~a~~~~tH~~L~v~~~~------~~~l~DvGFGg~~l~A 134 (275)
T COG2162 73 LNGLFGRVLRELGFNVRLLLARVVWGLAPDALPPRTHRLLLVELEG------ETWLADVGFGGQTLTA 134 (275)
T ss_pred hhhHHHHHHHHcCCcceeeEEEEEecCCCCCCCcccceEEEEEecC------ceeEEecCCCCCCcCC
Confidence 355678889999999987 4447987554 457999999888764 4899999999776666
No 12
>cd00523 archeal_HJR Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain eukaryotes, however this CD includes only the archeal HJR's. The bacterial and archeal HJRs perform a similar function but differ in both sequence and structure. Structural similarity does however, exist between the archeal HJRs and type II restriction endonucleases, such as EcoRV, BglII, and Fok, and this similarity includes their active site configurations.
Probab=43.25 E-value=1.1e+02 Score=25.96 Aligned_cols=50 Identities=20% Similarity=0.272 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhCCCceEEeeecCCCCCCCCCCccceEEEEEccCCCCCCeEEEEecCcccc
Q 023044 90 LKKWLVRKLKMDGFNASLCHTSWATSSGCPAGDYEYIDIMVEDEQTEEPIRLIVDIDFKSQ 150 (288)
Q Consensus 90 lrr~v~~~Lr~~GydAaiCkSrW~~s~~~paG~yEYIdVi~~~~~~~~~~r~IVD~dFR~q 150 (288)
.-+.+++.|++.||.+- ++..++ ++.+-.||+|... ++.-++||+-.|..
T Consensus 8 ~E~~a~~~L~~~G~~vl----R~~~sG---~~~~~eiDIIA~~----~~~lvfVEVK~r~~ 57 (123)
T cd00523 8 AERELVKILEEKGFAVV----RAPGSG---GGPRPLPDIVAGN----GGTYLAIEVKSTKK 57 (123)
T ss_pred HHHHHHHHHHhCCCEEE----EEcCCC---CCCCCceeEEEec----CCEEEEEEEEecCC
Confidence 34679999999999887 222222 2346789999863 36889999998865
No 13
>PHA01753 Holliday junction resolvase
Probab=42.19 E-value=1.1e+02 Score=26.26 Aligned_cols=51 Identities=14% Similarity=0.172 Sum_probs=36.9
Q ss_pred hHHHHHHHHHHhCCCceEEeeecCCCCCCCCCCccceEEEEEccCCCCCCeEEEEecCcccc
Q 023044 89 GLKKWLVRKLKMDGFNASLCHTSWATSSGCPAGDYEYIDIMVEDEQTEEPIRLIVDIDFKSQ 150 (288)
Q Consensus 89 ~lrr~v~~~Lr~~GydAaiCkSrW~~s~~~paG~yEYIdVi~~~~~~~~~~r~IVD~dFR~q 150 (288)
..-+.+++.|++.|| .+....|..+ +.+-.||+|... ++.-++||+-.|..
T Consensus 9 ~~E~~a~~~L~~~G~--~il~rn~~~~-----~~~GEiDIIA~~----~~~lvfVEVKtR~~ 59 (121)
T PHA01753 9 YYEYKTLEILESNGF--KALRIPVSGT-----GKQALPDIIATK----NNTIYPIEVKSTSK 59 (121)
T ss_pred HHHHHHHHHHHHCCC--EEEEeccccC-----CCCCCccEEEee----CCEEEEEEEEeCCC
Confidence 345679999999999 5556666443 135679998863 35789999988865
No 14
>smart00832 C8 C8 domain. This domain contains 8 conserved cysteine residues, but this family only contains 7 of them to overlaps with other domains. It is found in disease-related proteins including von Willebrand factor, Alpha tectorin, Zonadhesin and Mucin.
Probab=41.92 E-value=22 Score=27.27 Aligned_cols=63 Identities=22% Similarity=0.345 Sum_probs=41.9
Q ss_pred EEEEec--CcccceeeccCcHHHHHHHhhCCCceeeChHHHHHHHHHHHHHHHHHHHHcCCCCCCCCchh
Q 023044 140 RLIVDI--DFKSQFELARPTQAYKELTNILPSIFVGQEEKLNKIISLLCSAAKQSLKERGLHIPPWRTST 207 (288)
Q Consensus 140 r~IVD~--dFR~qFeIArpT~~Y~~ll~~LP~vFVG~~~rL~~lV~~mc~a~k~S~k~~Gm~lPPWRk~~ 207 (288)
.+|.++ -|+.--.+--|++-|+..+..+=.. =|..+.|-..+ ..-++.+. +.|..+.+||+..
T Consensus 9 ~~l~~~~g~F~~Ch~~V~p~~f~~~Cv~D~C~~-~~~~~~lC~al---~aYa~aC~-~~Gv~v~~WR~~~ 73 (76)
T smart00832 9 GILLSPRGPFAACHSVVDPEPFFENCVYDTCAC-GGDCECLCDAL---AAYAAACA-EAGVCISPWRTPT 73 (76)
T ss_pred HhhcCCCCChHHHhCcCChHHHHHHHHHHHhCC-CCCCcccCHHH---HHHHHHHH-HCcCcCCCCCCCC
Confidence 456677 3777777788999999998766332 24444444433 33344444 5899999999875
No 15
>PRK08462 biotin carboxylase; Validated
Probab=37.68 E-value=93 Score=30.49 Aligned_cols=113 Identities=16% Similarity=0.112 Sum_probs=63.6
Q ss_pred hhhHHHHHHHHHHhCCCceEEeeecCCCCCCCCCCccceEEEEEccCCCCCCeEE-----EEecCcccceeeccCc----
Q 023044 87 SNGLKKWLVRKLKMDGFNASLCHTSWATSSGCPAGDYEYIDIMVEDEQTEEPIRL-----IVDIDFKSQFELARPT---- 157 (288)
Q Consensus 87 ~~~lrr~v~~~Lr~~GydAaiCkSrW~~s~~~paG~yEYIdVi~~~~~~~~~~r~-----IVD~dFR~qFeIArpT---- 157 (288)
+..+-..+++.+|++||.+..|-|.-+.....-.--++++.+ .+. .....| |+++--+.++....|+
T Consensus 12 ~g~~~~~~~~~~~~~G~~~v~~~~~~d~~~~~~~~ad~~~~~--~~~--~~~~~y~~~~~l~~~~~~~~~D~i~pg~g~l 87 (445)
T PRK08462 12 RGEIALRAIRTIQEMGKEAIAIYSTADKDALYLKYADAKICI--GGA--KSSESYLNIPAIISAAEIFEADAIFPGYGFL 87 (445)
T ss_pred CcHHHHHHHHHHHHcCCCEEEEechhhcCCchhhhCCEEEEe--CCC--chhcccCCHHHHHHHHHHcCCCEEEECCCcc
Confidence 344566899999999999999876544422111112333322 111 011122 3333333344333343
Q ss_pred ---HHHHHHHhhCCCceeeChHHHHHHHHHHHHHHHHHHHHcCCCCCCCC
Q 023044 158 ---QAYKELTNILPSIFVGQEEKLNKIISLLCSAAKQSLKERGLHIPPWR 204 (288)
Q Consensus 158 ---~~Y~~ll~~LP~vFVG~~~rL~~lV~~mc~a~k~S~k~~Gm~lPPWR 204 (288)
.....+++.+-..|+|+..+...+..- =..+++-|++.|.+.|||.
T Consensus 88 se~~~~a~~~e~~Gi~~~g~~~~~~~~~~d-K~~~r~~l~~~gIp~pp~~ 136 (445)
T PRK08462 88 SENQNFVEICSHHNIKFIGPSVEVMALMSD-KSKAKEVMKRAGVPVIPGS 136 (445)
T ss_pred ccCHHHHHHHHHCCCeEECcCHHHHHHhCC-HHHHHHHHHHCCCCCCCCc
Confidence 233356677777788887654443321 1367788999999999985
No 16
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=37.14 E-value=73 Score=31.37 Aligned_cols=114 Identities=14% Similarity=0.105 Sum_probs=63.1
Q ss_pred hhHHHHHHHHHHhCCCceEEeeecCCCC-CCCCCCccceEEEEEccCC--CCCCeEEEEecCcccceeeccCc-------
Q 023044 88 NGLKKWLVRKLKMDGFNASLCHTSWATS-SGCPAGDYEYIDIMVEDEQ--TEEPIRLIVDIDFKSQFELARPT------- 157 (288)
Q Consensus 88 ~~lrr~v~~~Lr~~GydAaiCkSrW~~s-~~~paG~yEYIdVi~~~~~--~~~~~r~IVD~dFR~qFeIArpT------- 157 (288)
..+-..++..+|+.||...+|-+.-+.. ..+ .-.++++.+- .... ..-...-|+++-++.+..+-.|+
T Consensus 11 g~~~~~~~~aa~~lG~~vv~~~~~~d~~a~~~-~~aD~~~~~~-~~~~~~~y~d~~~l~~~a~~~~id~I~pg~g~~se~ 88 (449)
T TIGR00514 11 GEIALRILRACKELGIKTVAVHSTADRDALHV-LLADEAVCIG-PAPSAKSYLNIPNIISAAEITGADAIHPGYGFLSEN 88 (449)
T ss_pred CHHHHHHHHHHHHcCCeEEEEEChhhhccccc-ccCCEEEEcC-CCCchhchhCHHHHHHHHHHhCCCEEEeCCCccccC
Confidence 4456679999999999999987643221 111 1223433220 0000 00000114444444444444332
Q ss_pred HHHHHHHhhCCCceeeChHHHHHHHHHHHHHHHHHHHHcCCCCCCCC
Q 023044 158 QAYKELTNILPSIFVGQEEKLNKIISLLCSAAKQSLKERGLHIPPWR 204 (288)
Q Consensus 158 ~~Y~~ll~~LP~vFVG~~~rL~~lV~~mc~a~k~S~k~~Gm~lPPWR 204 (288)
..+..+++.+-..|+|+..+..++..- =..+++-|++.|.+.|||-
T Consensus 89 ~~~a~~~e~~Gi~~~g~~~~~~~~~~D-K~~~r~~l~~~gip~pp~~ 134 (449)
T TIGR00514 89 ANFAEQCERSGFTFIGPSAESIRLMGD-KVSAIETMKKAGVPCVPGS 134 (449)
T ss_pred HHHHHHHHHCCCcEECcCHHHHHHhCC-HHHHHHHHHHCCCCCCCCc
Confidence 124567788877788876554443321 1357888999999999984
No 17
>COG0439 AccC Biotin carboxylase [Lipid metabolism]
Probab=36.77 E-value=77 Score=32.44 Aligned_cols=113 Identities=12% Similarity=0.097 Sum_probs=62.9
Q ss_pred HHHHHHHHHHhCCCceEEeeecCCCCCCCCCCccceEEEEEccCC--CCCCeEEEEecCccc-------ceeeccCcHHH
Q 023044 90 LKKWLVRKLKMDGFNASLCHTSWATSSGCPAGDYEYIDIMVEDEQ--TEEPIRLIVDIDFKS-------QFELARPTQAY 160 (288)
Q Consensus 90 lrr~v~~~Lr~~GydAaiCkSrW~~s~~~paG~yEYIdVi~~~~~--~~~~~r~IVD~dFR~-------qFeIArpT~~Y 160 (288)
+--.+++..++.|.....+-|.-+...-+-....|+|-|- .... +-....-|++..-+. -+.+..-.+..
T Consensus 13 ia~ri~ra~~~lGi~tvav~s~~d~~~~~~~~adeav~i~-~~~~~~syl~i~~ii~~a~~~gadai~pGygflsen~~f 91 (449)
T COG0439 13 IAVRIIRACRELGIETVAVYSEADADALHVALADEAVCIG-PAPSADSYLNIDAIIAAAEETGADAIHPGYGFLSENAAF 91 (449)
T ss_pred hHHHHHHHHHHhCCeEEEEeccccccchhhhhCceEEEcC-CccchhhhhhHHHHHHHHHhcCCceEcccchhhhCCHHH
Confidence 4556888889999988555544333332223333443332 1000 000111111111111 11223344567
Q ss_pred HHHHhhCCCceeeChHHHHHHHHHHHHHHHHHHHHcCCCCCCCC
Q 023044 161 KELTNILPSIFVGQEEKLNKIISLLCSAAKQSLKERGLHIPPWR 204 (288)
Q Consensus 161 ~~ll~~LP~vFVG~~~rL~~lV~~mc~a~k~S~k~~Gm~lPPWR 204 (288)
.++.+..=-.|+|+..+..+...- ...|++-+++.|.++|||+
T Consensus 92 ae~~~~~gl~fiGP~~~~i~~mgd-K~~ar~~~~~aGVP~vpgs 134 (449)
T COG0439 92 AEACAEAGLTFIGPSAEAIRRMGD-KITARRLMAKAGVPVVPGS 134 (449)
T ss_pred HHHHHHcCCeeeCcCHHHHHHhhh-HHHHHHHHHHcCCCcCCCC
Confidence 788888889999999865443211 3578999999999999998
No 18
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model.
Probab=34.91 E-value=1.4e+02 Score=27.45 Aligned_cols=47 Identities=15% Similarity=0.112 Sum_probs=32.2
Q ss_pred HHHHHHhhCCCceeeChHHHHHHHHHHHHHHHHHHHHcCCCCCCCCch
Q 023044 159 AYKELTNILPSIFVGQEEKLNKIISLLCSAAKQSLKERGLHIPPWRTS 206 (288)
Q Consensus 159 ~Y~~ll~~LP~vFVG~~~rL~~lV~~mc~a~k~S~k~~Gm~lPPWRk~ 206 (288)
...++++.+=.-|+|+......+.. ==..+++-|++.|.++|||+..
T Consensus 80 ~~~~~le~~gip~~g~~~~~~~~~~-dK~~~~~~l~~~gip~p~~~~~ 126 (315)
T TIGR01205 80 TIQGLLELMGIPYTGSGVLASALSM-DKLLTKLLWKALGLPTPDYIVL 126 (315)
T ss_pred HHHHHHHHcCCCccCCCHHHHHHHH-CHHHHHHHHHHCCCCCCCEEEE
Confidence 3567888888888897543333211 1125678889999999999854
No 19
>PRK08463 acetyl-CoA carboxylase subunit A; Validated
Probab=33.86 E-value=59 Score=32.64 Aligned_cols=45 Identities=18% Similarity=0.301 Sum_probs=32.7
Q ss_pred HHHHHhhCCCceeeChHHHHHHHHHHHHHHHHHHHHcCCCCCCCCc
Q 023044 160 YKELTNILPSIFVGQEEKLNKIISLLCSAAKQSLKERGLHIPPWRT 205 (288)
Q Consensus 160 Y~~ll~~LP~vFVG~~~rL~~lV~~mc~a~k~S~k~~Gm~lPPWRk 205 (288)
....+..+-..|+|+..+..++..-= ..+|+-|++.|.++|||-.
T Consensus 90 ~a~~~e~~Gi~~iGps~~~i~~~~DK-~~~k~~l~~~gIpvpp~~~ 134 (478)
T PRK08463 90 FAKAVEDAGIIFIGPKSEVIRKMGNK-NIARYLMKKNGIPIVPGTE 134 (478)
T ss_pred HHHHHHHCCCceecCCHHHHHhhCcH-HHHHHHHHHcCCCCCCCcc
Confidence 45666778888899866544444332 5788889999999999854
No 20
>PF01927 Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 This prokaryotic family of proteins have no known function. The proteins contain four conserved cysteines that may be involved in metal binding or disulphide bridges.
Probab=33.79 E-value=32 Score=29.27 Aligned_cols=18 Identities=22% Similarity=0.394 Sum_probs=15.9
Q ss_pred HHHHHHHHhCCCceEEee
Q 023044 92 KWLVRKLKMDGFNASLCH 109 (288)
Q Consensus 92 r~v~~~Lr~~GydAaiCk 109 (288)
..|+++||..||||..+.
T Consensus 10 ~~Lar~LR~lG~Dt~~~~ 27 (147)
T PF01927_consen 10 GRLARWLRLLGYDTLYSR 27 (147)
T ss_pred HHHHHHHHHCCCcEEEeC
Confidence 579999999999999755
No 21
>PF15645 Tox-PLDMTX: Dermonecrotoxin of the Papain-like fold
Probab=33.64 E-value=1.6e+02 Score=25.58 Aligned_cols=72 Identities=13% Similarity=0.102 Sum_probs=44.1
Q ss_pred HHHHHHHHHHhCCC-ceEEeee-cCCCCCCCCCCccceEEEEEccCCCCCCeEEEEecCcccceeeccCcHHHHHHHhhC
Q 023044 90 LKKWLVRKLKMDGF-NASLCHT-SWATSSGCPAGDYEYIDIMVEDEQTEEPIRLIVDIDFKSQFELARPTQAYKELTNIL 167 (288)
Q Consensus 90 lrr~v~~~Lr~~Gy-dAaiCkS-rW~~s~~~paG~yEYIdVi~~~~~~~~~~r~IVD~dFR~qFeIArpT~~Y~~ll~~L 167 (288)
..+.|+..||..|| |..+-.= -|+.......-+|-=+.+. ..++-|||||--. ||.=--.
T Consensus 10 a~~~v~~~lk~~g~~~~k~~~l~~W~~~~~~~p~NH~vv~~k------~~g~eyV~D~Ta~-QF~~~~~----------- 71 (135)
T PF15645_consen 10 AMKEVADFLKDKGYEDIKYRGLLIWENANDDSPTNHFVVVAK------KNGKEYVFDPTAH-QFSNKGN----------- 71 (135)
T ss_pred HHHHHHHHHHhCCCCcceeeEEEEecCCCccCCcceEEEEEE------ECCEEEEEeCcHH-HhhccCC-----------
Confidence 35689999999999 4343322 5866554444555333222 3367999998643 4432221
Q ss_pred C-CceeeChHHHH
Q 023044 168 P-SIFVGQEEKLN 179 (288)
Q Consensus 168 P-~vFVG~~~rL~ 179 (288)
+ ..|+++.+.=.
T Consensus 72 ~~~p~i~~~~~W~ 84 (135)
T PF15645_consen 72 DNGPIILPEDAWK 84 (135)
T ss_pred CCCceEecHHHHH
Confidence 2 68999888655
No 22
>PRK12413 phosphomethylpyrimidine kinase; Provisional
Probab=30.56 E-value=1.1e+02 Score=27.33 Aligned_cols=46 Identities=7% Similarity=0.094 Sum_probs=30.6
Q ss_pred CeEEEEecCcccceeeccCcHHHHHHH-hhCC--CceeeChHHHHHHHH
Q 023044 138 PIRLIVDIDFKSQFELARPTQAYKELT-NILP--SIFVGQEEKLNKIIS 183 (288)
Q Consensus 138 ~~r~IVD~dFR~qFeIArpT~~Y~~ll-~~LP--~vFVG~~~rL~~lV~ 183 (288)
+.++|+||.++...--.-..+.+.+.+ ..+| .++..+.+++..+..
T Consensus 97 ~~~vv~DPv~~~~~~~~~~~~~~~~~l~~ll~~~dli~pN~~E~~~L~g 145 (253)
T PRK12413 97 GIPVVLDPVLVCKETHDVEVSELRQELIQFFPYVTVITPNLVEAELLSG 145 (253)
T ss_pred CCCEEEcCceecCCCCccccHHHHHHHHHHhccCcEECCCHHHHHHHhC
Confidence 568999999998653111123344334 5678 788888888888764
No 23
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=30.32 E-value=91 Score=30.47 Aligned_cols=44 Identities=18% Similarity=0.312 Sum_probs=31.9
Q ss_pred HHHHHHhhCCCceeeChHHHHHHHHHHHHHHHHHHHHcCCCCCCC
Q 023044 159 AYKELTNILPSIFVGQEEKLNKIISLLCSAAKQSLKERGLHIPPW 203 (288)
Q Consensus 159 ~Y~~ll~~LP~vFVG~~~rL~~lV~~mc~a~k~S~k~~Gm~lPPW 203 (288)
.+..+++.+-..|+|+..+...+..= =..+++-|++.|.+.|||
T Consensus 90 ~~~~~~e~~gi~~~g~~~~~~~~~~D-K~~~r~~l~~~gIp~pp~ 133 (451)
T PRK08591 90 DFAEICEDSGFTFIGPSAETIRLMGD-KVTAKATMKKAGVPVVPG 133 (451)
T ss_pred HHHHHHHHCCCceECcCHHHHHHhcC-HHHHHHHHHHcCCCCCCC
Confidence 35677888888888876554444322 235788999999999998
No 24
>KOG1282 consensus Serine carboxypeptidases (lysosomal cathepsin A) [Posttranslational modification, protein turnover, chaperones; Amino acid transport and metabolism]
Probab=29.92 E-value=22 Score=36.42 Aligned_cols=36 Identities=31% Similarity=0.569 Sum_probs=24.8
Q ss_pred ccccccccccccCCCCCCC----CCCCCCCCCCCCCCCcccccccccc
Q 023044 241 ASVGNVAISMVKNPKRSAF----GGGSASAAGAGPGCSGLSSQFSNMG 284 (288)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~l~s~~~~~~ 284 (288)
...==|.-+-.+||++.-| =| |||||.|+-.|...|
T Consensus 57 ~~LFYwf~eS~~~P~~dPlvLWLnG--------GPGCSSl~G~~~E~G 96 (454)
T KOG1282|consen 57 RQLFYWFFESENNPETDPLVLWLNG--------GPGCSSLGGLFEENG 96 (454)
T ss_pred ceEEEEEEEccCCCCCCCEEEEeCC--------CCCccchhhhhhhcC
Confidence 3344577776788887654 33 489999997777665
No 25
>COG5005 Mu-like prophage protein gpG [General function prediction only]
Probab=29.49 E-value=55 Score=28.80 Aligned_cols=58 Identities=17% Similarity=0.348 Sum_probs=44.9
Q ss_pred cHHHHHHHhhCCCceeeChHHHHHHHHHHHHHHHHHHHHcCCCCCCCCchhh-HhhhccCC
Q 023044 157 TQAYKELTNILPSIFVGQEEKLNKIISLLCSAAKQSLKERGLHIPPWRTSTY-MHSKWLSA 216 (288)
Q Consensus 157 T~~Y~~ll~~LP~vFVG~~~rL~~lV~~mc~a~k~S~k~~Gm~lPPWRk~~y-m~sKWl~~ 216 (288)
|..-++-+.+|-.+.=|+.+=.+++-..|-.|++..|+.-|.| -|++.+| +.-|=|.-
T Consensus 9 ~~~i~~~~~~laq~~~~rk~Lmr~vA~~m~sav~~nF~~~grP--~w~~~Ky~r~Gk~L~~ 67 (140)
T COG5005 9 TSTIQQKLEALAQVTDGRKDLMRSVAGTMRSAVEKNFELEGRP--KWKKRKYGRTGKILQD 67 (140)
T ss_pred HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCCc--chhhcccCCCCCceee
Confidence 3444555666666677777888999999999999999999986 8999999 66555543
No 26
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=28.85 E-value=95 Score=31.07 Aligned_cols=45 Identities=13% Similarity=0.242 Sum_probs=31.0
Q ss_pred HHHHHhhCCCceeeChHHHHHHHHHHHHHHHHHHHHcCCCCCCCCc
Q 023044 160 YKELTNILPSIFVGQEEKLNKIISLLCSAAKQSLKERGLHIPPWRT 205 (288)
Q Consensus 160 Y~~ll~~LP~vFVG~~~rL~~lV~~mc~a~k~S~k~~Gm~lPPWRk 205 (288)
...+++.+-..|+|+..+..++..= =..+|+-|++.|.++|||..
T Consensus 90 ~a~~~e~~Gi~~igps~~~i~~~~D-K~~~r~~l~~~GIp~pp~~~ 134 (472)
T PRK07178 90 LAEICAERGIKFIGPSAEVIRRMGD-KTEARRAMIKAGVPVTPGSE 134 (472)
T ss_pred HHHHHHHcCCCccCCCHHHHHHhcC-HHHHHHHHHHCCCCCCCCcC
Confidence 4466777777788886654443322 23577889999999999853
No 27
>PRK10446 ribosomal protein S6 modification protein; Provisional
Probab=26.40 E-value=2.3e+02 Score=26.29 Aligned_cols=42 Identities=14% Similarity=0.028 Sum_probs=26.8
Q ss_pred HHHHhhCCCceeeChHHHHHHHHHHH-HHHHHHHHHcCCCCCCCCc
Q 023044 161 KELTNILPSIFVGQEEKLNKIISLLC-SAAKQSLKERGLHIPPWRT 205 (288)
Q Consensus 161 ~~ll~~LP~vFVG~~~rL~~lV~~mc-~a~k~S~k~~Gm~lPPWRk 205 (288)
..+++.+- ++|++...-.++ .+= ..+++-|++.|.++|||.-
T Consensus 77 ~~~le~~g-~~v~n~~~a~~~--~~dK~~~~~~l~~~gip~P~t~~ 119 (300)
T PRK10446 77 LRQFEMLG-SYPLNESVAIAR--ARDKLRSMQLLARQGIDLPVTGI 119 (300)
T ss_pred HHHHHHCC-CceecCHHHHHh--hhcHHHHHHHHHHcCCCCCCEEE
Confidence 45666665 677776541111 111 2457889999999999974
No 28
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=25.97 E-value=4.1e+02 Score=24.23 Aligned_cols=94 Identities=15% Similarity=0.170 Sum_probs=51.5
Q ss_pred HHHHHHHHhCCCceEEeeecCCCCCCCCC-CccceEEEEEccCCCCCCeEEEEecCcccceeeccCcHHHHHHHhhCCCc
Q 023044 92 KWLVRKLKMDGFNASLCHTSWATSSGCPA-GDYEYIDIMVEDEQTEEPIRLIVDIDFKSQFELARPTQAYKELTNILPSI 170 (288)
Q Consensus 92 r~v~~~Lr~~GydAaiCkSrW~~s~~~pa-G~yEYIdVi~~~~~~~~~~r~IVD~dFR~qFeIArpT~~Y~~ll~~LP~v 170 (288)
+.+.+.|++.||++.+-. |.... +.- -.+. +|+++... -.++-. ...+.++++.+---
T Consensus 26 ~~i~~al~~~g~~v~~i~--~~~~~-~~~~~~~~-~D~v~~~~--------------~g~~~~---~~~~~~~le~~gi~ 84 (304)
T PRK01372 26 AAVLAALREAGYDAHPID--PGEDI-AAQLKELG-FDRVFNAL--------------HGRGGE---DGTIQGLLELLGIP 84 (304)
T ss_pred HHHHHHHHHCCCEEEEEe--cCcch-HHHhccCC-CCEEEEec--------------CCCCCC---ccHHHHHHHHcCCC
Confidence 578999999999987753 32211 000 0111 23333211 011110 01245678888777
Q ss_pred eeeChHHHHHHHHHHHHHHHHHHHHcCCCCCCCCchh
Q 023044 171 FVGQEEKLNKIISLLCSAAKQSLKERGLHIPPWRTST 207 (288)
Q Consensus 171 FVG~~~rL~~lV~~mc~a~k~S~k~~Gm~lPPWRk~~ 207 (288)
|+|+......+.. ==..+++-|++.|.+.|||+...
T Consensus 85 ~~g~~~~~~~~~~-dK~~~k~~l~~~gIp~p~~~~~~ 120 (304)
T PRK01372 85 YTGSGVLASALAM-DKLRTKLVWQAAGLPTPPWIVLT 120 (304)
T ss_pred ccCCCHHHHHHHh-CHHHHHHHHHHCCCCCCCEEEEe
Confidence 8888533322221 01256777999999999998543
No 29
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=25.80 E-value=17 Score=34.68 Aligned_cols=53 Identities=13% Similarity=0.327 Sum_probs=40.3
Q ss_pred cHHHHHHHhhCCCceeeChHHHHHHHHH-----HHHHHHHHHHHcCCCCCCCCchhhHh
Q 023044 157 TQAYKELTNILPSIFVGQEEKLNKIISL-----LCSAAKQSLKERGLHIPPWRTSTYMH 210 (288)
Q Consensus 157 T~~Y~~ll~~LP~vFVG~~~rL~~lV~~-----mc~a~k~S~k~~Gm~lPPWRk~~ym~ 210 (288)
.+.|.+.|+.||.+-. ..-.|..-|.+ |..+.++.+......+.|||+-.|-.
T Consensus 39 ~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pwrkg~~~~ 96 (322)
T PRK15068 39 FKKWEKALEQLPELTP-DRLDLLDSVTIGSEEPLSEGQRKRIENLLRALMPWRKGPFSL 96 (322)
T ss_pred HHHHHHHHHhccCCCc-ceeccCCceEeccCCCCCHHHHHHHHHHHHhhcCcccCCccc
Confidence 3678999999997643 32345554544 58888899999999999999998765
No 30
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=25.31 E-value=68 Score=33.32 Aligned_cols=72 Identities=13% Similarity=0.153 Sum_probs=50.5
Q ss_pred HHHHHHhCCCceEEeeecCCCCCCCCCCccceEEEEEccCCCCCCeEEEEecCcccceeeccCcHHHHHHHhhCCCceee
Q 023044 94 LVRKLKMDGFNASLCHTSWATSSGCPAGDYEYIDIMVEDEQTEEPIRLIVDIDFKSQFELARPTQAYKELTNILPSIFVG 173 (288)
Q Consensus 94 v~~~Lr~~GydAaiCkSrW~~s~~~paG~yEYIdVi~~~~~~~~~~r~IVD~dFR~qFeIArpT~~Y~~ll~~LP~vFVG 173 (288)
-+..|-++|||..||.++|.--+++.+..- . + --++|-.||-=| ..|..+++.++++...
T Consensus 15 ~a~~La~~g~~vt~~ea~~~~GGk~~s~~~-------~-d------g~~~E~glh~f~------~~Y~n~~~ll~~~~~~ 74 (485)
T COG3349 15 AAYELADAGYDVTLYEARDRLGGKVASWRD-------S-D------GNHVEHGLHVFF------GCYYNLLTLLKELPIE 74 (485)
T ss_pred HHHHHHhCCCceEEEeccCccCceeeeeec-------C-C------CCeeeeeeEEec------hhHHHHHHHhhhCCch
Confidence 467899999999999999977666654322 1 1 123333443333 3599999999999988
Q ss_pred ChHHHHHHHHHH
Q 023044 174 QEEKLNKIISLL 185 (288)
Q Consensus 174 ~~~rL~~lV~~m 185 (288)
...+++..+.+.
T Consensus 75 ~~~~~~~~~~~~ 86 (485)
T COG3349 75 DRLQLREHTKTF 86 (485)
T ss_pred heeehHhhhhhh
Confidence 777887777766
No 31
>PF00450 Peptidase_S10: Serine carboxypeptidase; InterPro: IPR001563 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S10 (clan SC). The type example is carboxypeptidase Y from Saccharomyces cerevisiae (Baker's yeast) []. All known carboxypeptidases are either metallo carboxypeptidases or serine carboxypeptidases (3.4.16.5 from EC and 3.4.16.6 from EC). The catalytic activity of the serine carboxypeptidases, like that of the trypsin family serine proteases, is provided by a charge relay system involving an aspartic acid residue hydrogen-bonded to a histidine, which is itself hydrogen-bonded to a serine []. The sequences surrounding the active site serine and histidine residues are highly conserved in all the serine carboxypeptidases.; GO: 0004185 serine-type carboxypeptidase activity, 0006508 proteolysis; PDB: 1AC5_A 1WHS_B 3SC2_B 1WHT_A 1BCR_A 1BCS_A 1GXS_A 1IVY_A 1WPX_A 1YSC_A ....
Probab=25.26 E-value=26 Score=32.94 Aligned_cols=15 Identities=47% Similarity=1.019 Sum_probs=10.6
Q ss_pred CCCCCcccccccccc
Q 023044 270 GPGCSGLSSQFSNMG 284 (288)
Q Consensus 270 ~~~~~~l~s~~~~~~ 284 (288)
|||||++...|-.+|
T Consensus 49 GPG~SS~~g~f~e~G 63 (415)
T PF00450_consen 49 GPGCSSMWGLFGENG 63 (415)
T ss_dssp TTTB-THHHHHCTTS
T ss_pred CceeccccccccccC
Confidence 689999887776665
No 32
>cd01173 pyridoxal_pyridoxamine_kinase Pyridoxal kinase plays a key role in the synthesis of the active coenzyme pyridoxal-5'-phosphate (PLP), by catalyzing the phosphorylation of the precursor vitamin B6 in the presence of Zn2+ and ATP. Mammals are unable to synthesize PLP de novo and require its precursors in the form of vitamin B6 (pyridoxal, pyridoxine, and pyridoxamine) from their diet. Pyridoxal kinase encoding genes are also found in many other species including yeast and bacteria.
Probab=25.05 E-value=1.3e+02 Score=26.85 Aligned_cols=46 Identities=15% Similarity=0.173 Sum_probs=31.2
Q ss_pred CeEEEEecCcccceeec----cCcHHHHHHHhhCCCceeeChHHHHHHHH
Q 023044 138 PIRLIVDIDFKSQFELA----RPTQAYKELTNILPSIFVGQEEKLNKIIS 183 (288)
Q Consensus 138 ~~r~IVD~dFR~qFeIA----rpT~~Y~~ll~~LP~vFVG~~~rL~~lV~ 183 (288)
+..+|+||.+++.-..- ...+.+..+|...+.++..+.+++..+..
T Consensus 103 ~~~vv~Dpv~~~~~~~~~~~~~~~~~~~~~l~~~~dvi~pN~~Ea~~l~g 152 (254)
T cd01173 103 NLLYVCDPVMGDNGKLYVVAEEIVPVYRDLLVPLADIITPNQFELELLTG 152 (254)
T ss_pred CceEEECCCCCcCCcceecChhHHHHHHHHHHhcCCEECCcHHHHHHHcC
Confidence 46899999886532221 12234556666678999999999888764
No 33
>PF12852 Cupin_6: Cupin
Probab=24.33 E-value=1.1e+02 Score=26.28 Aligned_cols=41 Identities=24% Similarity=0.315 Sum_probs=31.6
Q ss_pred cceeeccCcHHHHHHHhhCCCceee-----ChHHHHHHHHHHHHHHHH
Q 023044 149 SQFELARPTQAYKELTNILPSIFVG-----QEEKLNKIISLLCSAAKQ 191 (288)
Q Consensus 149 ~qFeIArpT~~Y~~ll~~LP~vFVG-----~~~rL~~lV~~mc~a~k~ 191 (288)
.+|++..+. -..|++.||++++= ..+.|..++++|-+|+..
T Consensus 115 g~~~~~~~~--~~~Ll~~LP~~i~i~~~~~~~~~L~~~l~~l~~E~~~ 160 (186)
T PF12852_consen 115 GRFEFDPGA--AHPLLAALPPVIHIRADDAAAPWLAALLALLRSESAQ 160 (186)
T ss_pred EEEEECCcc--cchhHhhCCCeEEEecCCCCchhHHHHHHHHHHHHhc
Confidence 456666554 34799999998886 678899999999888764
No 34
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=23.65 E-value=4.4e+02 Score=24.50 Aligned_cols=45 Identities=16% Similarity=0.083 Sum_probs=30.5
Q ss_pred HHHHHhhCCCceeeChHHHHHHHHHHHHHHHHHHHHcCCCCCCCCc
Q 023044 160 YKELTNILPSIFVGQEEKLNKIISLLCSAAKQSLKERGLHIPPWRT 205 (288)
Q Consensus 160 Y~~ll~~LP~vFVG~~~rL~~lV~~mc~a~k~S~k~~Gm~lPPWRk 205 (288)
.+.+++.+=--|+|+..+-.++- .==..+|+-|++.|.+.|||+-
T Consensus 74 i~~~le~~gip~~Gs~~~a~~l~-~DK~~~k~~l~~~gIptp~~~~ 118 (296)
T PRK14569 74 VSALLEMLEIKHTSSSMKSSVIT-MDKMISKEILMHHRMPTPMAKF 118 (296)
T ss_pred HHHHHHHcCCCeeCCCHHHHHHH-HCHHHHHHHHHHCCCCCCCeEE
Confidence 56788887777888664332221 1113567789999999999964
No 35
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=23.28 E-value=2.2e+02 Score=31.85 Aligned_cols=106 Identities=19% Similarity=0.144 Sum_probs=57.1
Q ss_pred HHHHHHHhCCCceEEeeecCCCCCCCC-CCccceEEEEEccCCCCCCeEEEEecCcccceeeccCcH------------H
Q 023044 93 WLVRKLKMDGFNASLCHTSWATSSGCP-AGDYEYIDIMVEDEQTEEPIRLIVDIDFKSQFELARPTQ------------A 159 (288)
Q Consensus 93 ~v~~~Lr~~GydAaiCkSrW~~s~~~p-aG~yEYIdVi~~~~~~~~~~r~IVD~dFR~qFeIArpT~------------~ 159 (288)
++++.|++.||.+.++.+...+-...+ -.++.|++ +.+ ...|.++-=+.++...-|+- .
T Consensus 31 q~~kalke~G~~vi~v~~np~~~~~~~~~aD~~y~~----p~~----~~~v~~ii~~e~~DaIlp~~gg~~~l~la~~l~ 102 (1050)
T TIGR01369 31 QACKALKEEGYRVILVNSNPATIMTDPEMADKVYIE----PLT----PEAVEKIIEKERPDAILPTFGGQTALNLAVELE 102 (1050)
T ss_pred HHHHHHHHcCCEEEEEecchhhccCChhcCCEEEEC----CCC----HHHHHHHHHHhCCCEEEECCCChhHHHHHhhHH
Confidence 689999999999999988754311111 12333432 110 01111111122222222221 2
Q ss_pred HHHHHhhCCCceeeChHHHHHHHHHHHHHHHHHHHHcCCCCCCCCchh
Q 023044 160 YKELTNILPSIFVGQEEKLNKIISLLCSAAKQSLKERGLHIPPWRTST 207 (288)
Q Consensus 160 Y~~ll~~LP~vFVG~~~rL~~lV~~mc~a~k~S~k~~Gm~lPPWRk~~ 207 (288)
.+.+++.+-..|+|+..+..++.+= =..+|+-|++.|.++|||+...
T Consensus 103 ~~~~le~~Gv~~~G~~~~ai~~~~D-K~~~k~~l~~~Gipvp~~~~v~ 149 (1050)
T TIGR01369 103 ESGVLEKYGVEVLGTPVEAIKKAED-RELFREAMKEIGEPVPESEIAH 149 (1050)
T ss_pred HHhHHHHCCCEEECCCHHHHHHhCC-HHHHHHHHHHCCCCCCCeeecC
Confidence 2456677766678876544333211 1246888999999999997653
No 36
>COG4633 Plastocyanin domain containing protein [General function prediction only]
Probab=22.33 E-value=62 Score=31.07 Aligned_cols=54 Identities=24% Similarity=0.327 Sum_probs=33.9
Q ss_pred HHHhCCCceEEeeecCCC-----------CCCCCCCccceEEEEEccCC-CCCCeEEEEecCcccc
Q 023044 97 KLKMDGFNASLCHTSWAT-----------SSGCPAGDYEYIDIMVEDEQ-TEEPIRLIVDIDFKSQ 150 (288)
Q Consensus 97 ~Lr~~GydAaiCkSrW~~-----------s~~~paG~yEYIdVi~~~~~-~~~~~r~IVD~dFR~q 150 (288)
-|-..||.++.-.|--.+ +..-|-|+|+-||.....+- +..+++.|||+||.-.
T Consensus 169 t~~~~~~~~~~~iS~s~~~ve~~ls~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~k~ivev~~~i~ 234 (272)
T COG4633 169 TLTGKGYEFQPLISVSNKGVETKLSVDLNGFDNPNGEYSIIDLNTRQTVTTFNGKKGIVEVDFKID 234 (272)
T ss_pred ecCCcceeeeeeeeeccccccceeecccccccCCCCCccceeeeeEEEEeecCCceEEEEecceee
Confidence 355667777766552111 11224699999986543221 5678999999999744
No 37
>PRK05586 biotin carboxylase; Validated
Probab=21.90 E-value=1.4e+02 Score=29.52 Aligned_cols=44 Identities=14% Similarity=0.326 Sum_probs=31.1
Q ss_pred HHHHHHhhCCCceeeChHHHHHHHHHHHHHHHHHHHHcCCCCCCC
Q 023044 159 AYKELTNILPSIFVGQEEKLNKIISLLCSAAKQSLKERGLHIPPW 203 (288)
Q Consensus 159 ~Y~~ll~~LP~vFVG~~~rL~~lV~~mc~a~k~S~k~~Gm~lPPW 203 (288)
.-..+.+.+--.|+|+..+...+..= =..+|+-|++.|.++|||
T Consensus 90 ~~a~~~~~~gi~~~g~s~~~~~~~~D-K~~~k~~l~~~GIpvp~~ 133 (447)
T PRK05586 90 KFAKMCKECNIVFIGPDSETIELMGN-KSNAREIMIKAGVPVVPG 133 (447)
T ss_pred HHHHHHHHCCCcEECcCHHHHHhhCC-HHHHHHHHHHCCCCCCCC
Confidence 34456677777788877654444322 146788899999999998
No 38
>PRK08654 pyruvate carboxylase subunit A; Validated
Probab=20.96 E-value=2e+02 Score=29.33 Aligned_cols=46 Identities=15% Similarity=0.271 Sum_probs=31.4
Q ss_pred HHHHHHhhCCCceeeChHHHHHHHHHHHHHHHHHHHHcCCCCCCCCc
Q 023044 159 AYKELTNILPSIFVGQEEKLNKIISLLCSAAKQSLKERGLHIPPWRT 205 (288)
Q Consensus 159 ~Y~~ll~~LP~vFVG~~~rL~~lV~~mc~a~k~S~k~~Gm~lPPWRk 205 (288)
...+.++.+=..|+|+....-++..- =..+++-|++.|.++|||..
T Consensus 90 ~~a~~~e~~gi~~iGps~~~i~~~~D-K~~~k~~l~~~GVpv~p~~~ 135 (499)
T PRK08654 90 EFAKACEKAGIVFIGPSSDVIEAMGS-KINAKKLMKKAGVPVLPGTE 135 (499)
T ss_pred HHHHHHHHCCCcEECCCHHHHHHhCC-HHHHHHHHHHcCcCCCCCcC
Confidence 34566777778899976544333211 12478889999999999975
Done!