Query 023044
Match_columns 288
No_of_seqs 142 out of 202
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 15:24:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023044.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023044hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1e2t_A NAT, N-hydroxyarylamine 89.6 0.75 2.6E-05 41.9 7.1 55 90-150 75-131 (284)
2 1w4t_A Arylamine N-acetyltrans 87.4 1.1 3.8E-05 41.2 6.7 55 90-150 96-154 (299)
3 2bsz_A Arylamine N-acetyltrans 86.9 1.2 4.2E-05 40.4 6.6 55 90-150 76-133 (278)
4 2vfb_A Arylamine N-acetyltrans 85.0 1.5 5E-05 39.9 6.1 55 90-150 73-133 (280)
5 1w5r_A Arylamine N-acetyltrans 84.6 1.3 4.5E-05 40.1 5.6 55 90-150 76-136 (278)
6 3lnb_A N-acetyltransferase fam 82.9 1.8 6.2E-05 40.3 5.9 55 90-150 102-159 (309)
7 3d9w_A Putative acetyltransfer 82.8 1.8 6.3E-05 39.6 5.8 53 90-148 85-140 (293)
8 2ija_A Arylamine N-acetyltrans 75.6 3.6 0.00012 37.4 5.4 56 90-151 76-134 (295)
9 4eg0_A D-alanine--D-alanine li 53.9 20 0.0007 31.5 5.7 94 92-206 35-128 (317)
10 1iow_A DD-ligase, DDLB, D-ALA\ 44.8 31 0.0011 29.4 5.3 94 92-206 24-117 (306)
11 3vot_A L-amino acid ligase, BL 37.7 1.3E+02 0.0045 27.4 8.6 23 92-114 18-40 (425)
12 3ici_C Calnexin, PP90; protein 37.2 10 0.00036 25.6 0.8 15 241-255 24-38 (38)
13 4fu0_A D-alanine--D-alanine li 36.5 38 0.0013 30.6 4.7 47 159-206 114-160 (357)
14 3kd4_A Putative protease; stru 29.4 84 0.0029 30.4 6.1 50 91-146 291-344 (506)
15 1gef_A Holliday junction resol 29.0 91 0.0031 25.1 5.3 45 91-151 9-53 (123)
16 1y88_A Hypothetical protein AF 28.5 75 0.0026 27.8 5.1 102 86-206 16-126 (199)
17 3se7_A VANA; alpha-beta struct 26.9 2.9E+02 0.01 24.5 8.9 48 159-207 107-154 (346)
18 3i12_A D-alanine-D-alanine lig 24.0 79 0.0027 28.6 4.6 47 159-206 115-161 (364)
19 1e4e_A Vancomycin/teicoplanin 23.9 1.1E+02 0.0036 27.2 5.4 47 159-206 107-153 (343)
20 2ebi_A DNA binding protein GT- 20.3 49 0.0017 24.4 2.0 28 87-114 32-61 (86)
No 1
>1e2t_A NAT, N-hydroxyarylamine O-acetyltransferase; acetyl COA dependent; 2.8A {Salmonella typhimurium} SCOP: d.3.1.5
Probab=89.62 E-value=0.75 Score=41.89 Aligned_cols=55 Identities=24% Similarity=0.291 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhCCCceEEeeec--CCCCCCCCCCccceEEEEEccCCCCCCeEEEEecCcccc
Q 023044 90 LKKWLVRKLKMDGFNASLCHTS--WATSSGCPAGDYEYIDIMVEDEQTEEPIRLIVDIDFKSQ 150 (288)
Q Consensus 90 lrr~v~~~Lr~~GydAaiCkSr--W~~s~~~paG~yEYIdVi~~~~~~~~~~r~IVD~dFR~q 150 (288)
+...+...|++.||++..+..+ |......++..|-.+-|.+. +.+||||+.|=..
T Consensus 75 lN~Lf~~~L~~LGF~V~~~~~rV~~~~~~~~~~~~H~~l~V~id------g~~ylvDVGFG~~ 131 (284)
T 1e2t_A 75 LNGLFERALRDIGFNVRSLLGRVILSHPASLPPRTHRLLLVDVE------DEQWIADVGFGGQ 131 (284)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEEECTTCCSSCCCSCEEEEEEEET------TEEEEECSCSCTT
T ss_pred HHHHHHHHHHHCCCeEEEEEEEEecCCCCCCCCCccEEEEEEEC------CceEEEecCCCcc
Confidence 3566888999999999998864 55444455788998888775 3599999999763
No 2
>1w4t_A Arylamine N-acetyltransferase; 5- aminosalicylic acid, NAT, xenobiotic metabolism, acyltransferase; 1.95A {Pseudomonas aeruginosa} SCOP: d.3.1.5
Probab=87.43 E-value=1.1 Score=41.25 Aligned_cols=55 Identities=18% Similarity=0.329 Sum_probs=42.8
Q ss_pred HHHHHHHHHHhCCCceEEeeec--CCCCCCC--CCCccceEEEEEccCCCCCCeEEEEecCcccc
Q 023044 90 LKKWLVRKLKMDGFNASLCHTS--WATSSGC--PAGDYEYIDIMVEDEQTEEPIRLIVDIDFKSQ 150 (288)
Q Consensus 90 lrr~v~~~Lr~~GydAaiCkSr--W~~s~~~--paG~yEYIdVi~~~~~~~~~~r~IVD~dFR~q 150 (288)
+...+...|+++||++..+..+ |...... ++..|-.+-|.+. +.+||||+.|=..
T Consensus 96 lN~Lf~~~L~~LGF~V~~l~arV~~~~~~~~~~~~~~H~~l~V~id------g~~ylvDVGFG~~ 154 (299)
T 1w4t_A 96 LNSLFARLLLALGYELELLVARVRWGLPDDAPLTQQSHLMLRLYLA------EGEFLVDVGFGSA 154 (299)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEEECTTCCTTSCCCCEEEEEEEEEET------TEEEEECSCSGGG
T ss_pred HHHHHHHHHHHcCCeEEEEEEEEEeCCCCcCCCCCCccEEEEEEEC------CceEEEeCCCCCc
Confidence 3566888999999999998864 5554444 5678988888775 3599999999774
No 3
>2bsz_A Arylamine N-acetyltransferase 1; acyltransferase, complete proteome; 2.0A {Rhizobium loti} SCOP: d.3.1.5
Probab=86.86 E-value=1.2 Score=40.39 Aligned_cols=55 Identities=18% Similarity=0.288 Sum_probs=42.5
Q ss_pred HHHHHHHHHHhCCCceEEeeec--CCCCCCC-CCCccceEEEEEccCCCCCCeEEEEecCcccc
Q 023044 90 LKKWLVRKLKMDGFNASLCHTS--WATSSGC-PAGDYEYIDIMVEDEQTEEPIRLIVDIDFKSQ 150 (288)
Q Consensus 90 lrr~v~~~Lr~~GydAaiCkSr--W~~s~~~-paG~yEYIdVi~~~~~~~~~~r~IVD~dFR~q 150 (288)
+...+...|+++||++..+..+ |...... ++..|-.+-|.+. +.+||||+.|=..
T Consensus 76 lN~Lf~~~L~~LGF~V~~~~arV~~~~~~~~~~~~~H~~l~V~id------g~~ylvDVGFG~~ 133 (278)
T 2bsz_A 76 HNLLFMHALKALGFEVGGLAARVLWGQSEDAITARSHMLLRVELD------GRTYIADVGFGGL 133 (278)
T ss_dssp HHHHHHHHHHHHTCEEEEEEEEECSSCCSSSSCCCCEEEEEEEET------TEEEEECSCCSSS
T ss_pred HHHHHHHHHHHCCCeEEEEEEEEeeCCCCCCCCCCccEEEEEEEC------CceEEEeCCCCcc
Confidence 3566888999999999998874 5444444 4678988888775 3599999999774
No 4
>2vfb_A Arylamine N-acetyltransferase; NAT, acetyl COA, mycobacteria, actyltransferase; 2.00A {Mycobacterium marinum} PDB: 2vfc_A* 3ltw_A*
Probab=84.98 E-value=1.5 Score=39.88 Aligned_cols=55 Identities=15% Similarity=0.256 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhCCCceEEeeec--CCCCCCC--CCCccceEEEEEccCCCCCCeE--EEEecCcccc
Q 023044 90 LKKWLVRKLKMDGFNASLCHTS--WATSSGC--PAGDYEYIDIMVEDEQTEEPIR--LIVDIDFKSQ 150 (288)
Q Consensus 90 lrr~v~~~Lr~~GydAaiCkSr--W~~s~~~--paG~yEYIdVi~~~~~~~~~~r--~IVD~dFR~q 150 (288)
+...+...|+++||++..+..+ |...... ++..|-.+-|.+.+ .+ ||||+.|=+.
T Consensus 73 lN~Lf~~~L~~LGF~V~~~~arV~~~~~~~~~~~~~~H~~l~V~idg------~~~~ylvDVGFG~~ 133 (280)
T 2vfb_A 73 HNGLIGYVLAELGYRVRRLAGRVVWLAPPDAPTPAQTHTVLAVTFPG------CQGPYLVDVGFGGM 133 (280)
T ss_dssp HHHHHHHHHHHHTCEEEEEEEEECTTCCTTSCCCCSCEEEEEEECTT------CSSCEEECSCSGGG
T ss_pred HHHHHHHHHHHCCCeEEEEEEEEEeCCCCCCCCCCCCcEEEEEEECC------eEEEEEEecCCCcc
Confidence 3566888999999999998874 6555555 47889888887642 36 9999999774
No 5
>1w5r_A Arylamine N-acetyltransferase; acyltransferase; 1.45A {Mycobacterium smegmatis} SCOP: d.3.1.5 PDB: 1w6f_A* 1gx3_A
Probab=84.62 E-value=1.3 Score=40.15 Aligned_cols=55 Identities=22% Similarity=0.340 Sum_probs=42.0
Q ss_pred HHHHHHHHHHhCCCceEEeeec--CCCCCCC--CCCccceEEEEEccCCCCCCeE--EEEecCcccc
Q 023044 90 LKKWLVRKLKMDGFNASLCHTS--WATSSGC--PAGDYEYIDIMVEDEQTEEPIR--LIVDIDFKSQ 150 (288)
Q Consensus 90 lrr~v~~~Lr~~GydAaiCkSr--W~~s~~~--paG~yEYIdVi~~~~~~~~~~r--~IVD~dFR~q 150 (288)
+...+...|+++||++..+..+ |...... ++..|-.+-|.+.+ .+ ||||+.|=+.
T Consensus 76 lN~Lf~~~L~~LGF~V~~~~arV~~~~~~~~~~~~~~H~~l~V~idg------~~~~ylvDVGFG~~ 136 (278)
T 1w5r_A 76 HNGLLGYVLEELGFEVERLSGRVVWMRADDAPLPAQTHNVLSVAVPG------ADGRYLVDVGFGGQ 136 (278)
T ss_dssp HHHHHHHHHHHHTCEEEEEEEEECTTCCTTCCCCCEEEEEEEEECSS------CSCCEEECSCSCTT
T ss_pred HHHHHHHHHHHcCCeEEEEEEEEeeCCCCCCCCCCCccEEEEEEECC------eEEEEEEecCCCcc
Confidence 3566888999999999998874 6555555 36788888887642 36 9999999764
No 6
>3lnb_A N-acetyltransferase family protein; arylamine N-acetyltransferase, NAT, acetyltrans acyltransferase; HET: COA; 2.01A {Bacillus anthracis}
Probab=82.88 E-value=1.8 Score=40.31 Aligned_cols=55 Identities=18% Similarity=0.123 Sum_probs=42.0
Q ss_pred HHHHHHHHHHhCCCceEEeeec--CCCCCCC-CCCccceEEEEEccCCCCCCeEEEEecCcccc
Q 023044 90 LKKWLVRKLKMDGFNASLCHTS--WATSSGC-PAGDYEYIDIMVEDEQTEEPIRLIVDIDFKSQ 150 (288)
Q Consensus 90 lrr~v~~~Lr~~GydAaiCkSr--W~~s~~~-paG~yEYIdVi~~~~~~~~~~r~IVD~dFR~q 150 (288)
+...+...|++.||++..+..+ |...... +.+.|--+-|.+. +.+||||+.|-..
T Consensus 102 lN~lf~~~L~~lGf~v~~~~arV~~~~~~~~~~~~~H~~l~V~~~------g~~ylvDVGFG~~ 159 (309)
T 3lnb_A 102 LNSLLYYFLMDCGFQVYKVAGTVYDLYDNKWKPDDGHVIIILHHN------KKDYVIDAGFASH 159 (309)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEEEEETTTTEECSTTCEEEEEEEET------TEEEEECSCSTTC
T ss_pred HHHHHHHHHHHcCCeEEEEeEEEecCCCCCCCCCCccEEEEEEEC------CeEEEEecCCCCc
Confidence 4667899999999999999875 3222222 5678988888775 3599999999875
No 7
>3d9w_A Putative acetyltransferase; arylamine N-acetyltransferase, NAT, X-RAY diffraction, acyltransferase; 2.70A {Nocardia farcinica}
Probab=82.82 E-value=1.8 Score=39.60 Aligned_cols=53 Identities=11% Similarity=0.178 Sum_probs=39.9
Q ss_pred HHHHHHHHHHhCCCceEEeeec--CCCCCCCCCCccceEEE-EEccCCCCCCeEEEEecCcc
Q 023044 90 LKKWLVRKLKMDGFNASLCHTS--WATSSGCPAGDYEYIDI-MVEDEQTEEPIRLIVDIDFK 148 (288)
Q Consensus 90 lrr~v~~~Lr~~GydAaiCkSr--W~~s~~~paG~yEYIdV-i~~~~~~~~~~r~IVD~dFR 148 (288)
+...+...|+++||++..+..+ |.. ...++..|--+-| .+. .+.+||||+.|=
T Consensus 85 lN~Lf~~~L~~LGF~V~~~~arV~~~~-~~~~~~~H~~l~V~~l~-----dg~~ylvDVGFG 140 (293)
T 3d9w_A 85 NAGLFAAALERLGFGVTGHTGRVTMGA-GGLRPATHALLRVTTAD-----DDRVWMCDVGFG 140 (293)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEEECTTC-CSCCCEEEEEEEEECSS-----CSCEEEECCSSS
T ss_pred HHHHHHHHHHHcCCeEEEEEEEEecCC-CCCCCCccEEEEEEEcC-----CCCeEEEecCCC
Confidence 4667899999999999998875 433 2345678888777 554 135999999998
No 8
>2ija_A Arylamine N-acetyltransferase 1; arylamide acetylase 1, structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens} PDB: 2pqt_A* 2pfr_A*
Probab=75.61 E-value=3.6 Score=37.41 Aligned_cols=56 Identities=13% Similarity=0.138 Sum_probs=41.6
Q ss_pred HHHHHHHHHHhCCCceEEeeec--CCCCCCC-CCCccceEEEEEccCCCCCCeEEEEecCcccce
Q 023044 90 LKKWLVRKLKMDGFNASLCHTS--WATSSGC-PAGDYEYIDIMVEDEQTEEPIRLIVDIDFKSQF 151 (288)
Q Consensus 90 lrr~v~~~Lr~~GydAaiCkSr--W~~s~~~-paG~yEYIdVi~~~~~~~~~~r~IVD~dFR~qF 151 (288)
+...+...|+++||++..+..+ |...... +...|--+-|.+. +.+||||+.|=...
T Consensus 76 lN~Lf~~~L~~LGF~V~~~~~rV~~~~~~~~~~~~~H~~l~V~id------g~~ylvDVGFG~~~ 134 (295)
T 2ija_A 76 VNHLLYWALTTIGFETTMLGGYVYSTPAKKYSTGMIHLLLQVTID------GRNYIVDAGSGRSY 134 (295)
T ss_dssp HHHHHHHHHHHHTCEEEEEEEEEEETTTTEECSSCCEEEEEEEET------TEEEEECSCCCGGG
T ss_pred HHHHHHHHHHHcCCcEEEEEEEEeeCCCCCCCCCCCcEEEEEEEC------CceEEEeCCCCCcc
Confidence 4567888999999999998765 3222322 3578988888775 35999999998765
No 9
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A
Probab=53.87 E-value=20 Score=31.49 Aligned_cols=94 Identities=12% Similarity=0.087 Sum_probs=54.6
Q ss_pred HHHHHHHHhCCCceEEeeecCCCCCCCCCCccceEEEEEccCCCCCCeEEEEecCcccceeeccCcHHHHHHHhhCCCce
Q 023044 92 KWLVRKLKMDGFNASLCHTSWATSSGCPAGDYEYIDIMVEDEQTEEPIRLIVDIDFKSQFELARPTQAYKELTNILPSIF 171 (288)
Q Consensus 92 r~v~~~Lr~~GydAaiCkSrW~~s~~~paG~yEYIdVi~~~~~~~~~~r~IVD~dFR~qFeIArpT~~Y~~ll~~LP~vF 171 (288)
+.|++.|++.||++.++-++ . ........+-+|+++.... ..|- -....+.+++.+-.-|
T Consensus 35 ~~v~~al~~~g~~v~~i~~~--~-~~~~~l~~~~~D~v~~~~h--------------g~~g---e~~~~~~~le~~gip~ 94 (317)
T 4eg0_A 35 RLVLQGLRDAGIDAHPFDPA--E-RPLSALKDEGFVRAFNALH--------------GGYG---ENGQIQGALDFYGIRY 94 (317)
T ss_dssp HHHHHHHHHTTCEEEEECTT--T-SCTTHHHHTTCCEEEECCC--------------SGGG---TSSHHHHHHHHHTCEE
T ss_pred HHHHHHHHHCCCEEEEEeCC--C-chHHHhhhcCCCEEEEcCC--------------CCCC---chHHHHHHHHHcCCCe
Confidence 57999999999999998732 1 1011111122344443211 0110 0113468888888889
Q ss_pred eeChHHHHHHHHHHHHHHHHHHHHcCCCCCCCCch
Q 023044 172 VGQEEKLNKIISLLCSAAKQSLKERGLHIPPWRTS 206 (288)
Q Consensus 172 VG~~~rL~~lV~~mc~a~k~S~k~~Gm~lPPWRk~ 206 (288)
+|+.....++.. ==..+|+-|++.|.++|||+..
T Consensus 95 ~g~~~~~~~~~~-dK~~~k~~l~~~Gip~p~~~~~ 128 (317)
T 4eg0_A 95 TGSGVLGSALGL-DKFRTKLVWQQTGVPTPPFETV 128 (317)
T ss_dssp SSCCHHHHHHHH-CHHHHHHHHHHTTCCCCCEEEE
T ss_pred eCcCHHHHHHHh-CHHHHHHHHHHCCcCCCCEEEE
Confidence 987644333221 0135677899999999999854
No 10
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Probab=44.78 E-value=31 Score=29.39 Aligned_cols=94 Identities=10% Similarity=0.067 Sum_probs=51.8
Q ss_pred HHHHHHHHhCCCceEEeeecCCCCCCCCCCccceEEEEEccCCCCCCeEEEEecCcccceeeccCcHHHHHHHhhCCCce
Q 023044 92 KWLVRKLKMDGFNASLCHTSWATSSGCPAGDYEYIDIMVEDEQTEEPIRLIVDIDFKSQFELARPTQAYKELTNILPSIF 171 (288)
Q Consensus 92 r~v~~~Lr~~GydAaiCkSrW~~s~~~paG~yEYIdVi~~~~~~~~~~r~IVD~dFR~qFeIArpT~~Y~~ll~~LP~vF 171 (288)
+.|+..|++.||++.++... + .....-..+-+|+++..... .+.+ ....+.+++.+-..|
T Consensus 24 ~~l~~al~~~G~~v~~~~~~-~--~~~~~~~~~~~d~v~~~~~~----------~~~e-------~~~~~~~~e~~g~~~ 83 (306)
T 1iow_A 24 AAVLAGLREGGIDAYPVDPK-E--VDVTQLKSMGFQKVFIALHG----------RGGE-------DGTLQGMLELMGLPY 83 (306)
T ss_dssp HHHHHHHHHTTCEEEEECTT-T--SCGGGTTTTTEEEEEECCCS----------TTTS-------SSHHHHHHHHHTCCB
T ss_pred HHHHHHHHHCCCeEEEEecC-c--hHHHHhhccCCCEEEEcCCC----------CCCc-------chHHHHHHHHcCCCc
Confidence 57999999999999887643 1 10111111235655532210 0100 012345676666567
Q ss_pred eeChHHHHHHHHHHHHHHHHHHHHcCCCCCCCCch
Q 023044 172 VGQEEKLNKIISLLCSAAKQSLKERGLHIPPWRTS 206 (288)
Q Consensus 172 VG~~~rL~~lV~~mc~a~k~S~k~~Gm~lPPWRk~ 206 (288)
+|+......+.. ==..+++-|++.|.++|||+..
T Consensus 84 ~g~~~~~~~~~~-dK~~~~~~l~~~gi~~p~~~~~ 117 (306)
T 1iow_A 84 TGSGVMASALSM-DKLRSKLLWQGAGLPVAPWVAL 117 (306)
T ss_dssp SSCCHHHHHHHH-CHHHHHHHHHHTTCCBCCEEEE
T ss_pred cCCCHHHHHHHc-CHHHHHHHHHHCCCCCCCeEEE
Confidence 776543322211 0124677789999999999754
No 11
>3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis}
Probab=37.74 E-value=1.3e+02 Score=27.36 Aligned_cols=23 Identities=9% Similarity=0.160 Sum_probs=18.6
Q ss_pred HHHHHHHHhCCCceEEeeecCCC
Q 023044 92 KWLVRKLKMDGFNASLCHTSWAT 114 (288)
Q Consensus 92 r~v~~~Lr~~GydAaiCkSrW~~ 114 (288)
..+++..+++||.+.++.+..+.
T Consensus 18 ~~i~~aa~~lG~~vv~v~~~~~~ 40 (425)
T 3vot_A 18 PFIFEEAERLGLKVTFFYNSAED 40 (425)
T ss_dssp CHHHHHHHHTTCEEEEEEETTSC
T ss_pred HHHHHHHHHCCCEEEEEECCCcc
Confidence 46889999999999988776543
No 12
>3ici_C Calnexin, PP90; protein-protein complex, endoplasmic reticulum, glycoprotein isomerase, rotamase, chaperone, lectin, membrane; HET: MES; 1.70A {Canis lupus familiaris}
Probab=37.17 E-value=10 Score=25.56 Aligned_cols=15 Identities=20% Similarity=0.277 Sum_probs=12.6
Q ss_pred ccccccccccccCCC
Q 023044 241 ASVGNVAISMVKNPK 255 (288)
Q Consensus 241 ~~~~~~~~~~~~~~~ 255 (288)
..-+.|.+||+.||+
T Consensus 24 e~DGeWe~P~I~NPk 38 (38)
T 3ici_C 24 DMDGEWEAPRISNPA 38 (38)
T ss_pred CcCCcccCCcCCCcC
Confidence 345799999999996
No 13
>4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis}
Probab=36.51 E-value=38 Score=30.63 Aligned_cols=47 Identities=13% Similarity=0.124 Sum_probs=34.2
Q ss_pred HHHHHHhhCCCceeeChHHHHHHHHHHHHHHHHHHHHcCCCCCCCCch
Q 023044 159 AYKELTNILPSIFVGQEEKLNKIISLLCSAAKQSLKERGLHIPPWRTS 206 (288)
Q Consensus 159 ~Y~~ll~~LP~vFVG~~~rL~~lV~~mc~a~k~S~k~~Gm~lPPWRk~ 206 (288)
..+.+|+.+=--|||+...-.++- .==..+|+-|++.|.++|||...
T Consensus 114 ~~q~~le~~gip~~G~~~~a~~~~-~DK~~~k~~l~~~Gip~p~~~~~ 160 (357)
T 4fu0_A 114 TLQGIFELAGIPVVGCDTLSSALC-MDKDRAHKLVSLAGISVPKSVTF 160 (357)
T ss_dssp HHHHHHHHTTCCBSSCCHHHHHHH-HCHHHHHHHHHHTTCBCCCEEEE
T ss_pred HHHHHHHHCCCcEECcCHHHHHHH-hCHHHHHHHHHHCCCCCCCEEee
Confidence 467899999999999865433321 00135788999999999999753
No 14
>3kd4_A Putative protease; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE; 2.00A {Parabacteroides distasonis atcc 8503}
Probab=29.38 E-value=84 Score=30.40 Aligned_cols=50 Identities=12% Similarity=0.020 Sum_probs=37.1
Q ss_pred HHHHHHHHHhCCCceEEeeecCCCC----CCCCCCccceEEEEEccCCCCCCeEEEEecC
Q 023044 91 KKWLVRKLKMDGFNASLCHTSWATS----SGCPAGDYEYIDIMVEDEQTEEPIRLIVDID 146 (288)
Q Consensus 91 rr~v~~~Lr~~GydAaiCkSrW~~s----~~~paG~yEYIdVi~~~~~~~~~~r~IVD~d 146 (288)
-..++..||.+|..|..|--.-... .++|+.+|-.+.|.+. +..|++|+-
T Consensus 291 a~Ll~AllRa~GIpA~~v~~~t~~~~~~~~~lp~~nh~i~~v~~~------g~~y~lDat 344 (506)
T 3kd4_A 291 AQLLNVMLNAAGIPSEVLAVYPGHLDTDACGLAAIQTLAVKATVD------GKDQYLSAS 344 (506)
T ss_dssp HHHHHHHHHHTTCCEEEEEEEETTSCGGGCCSTTCCEEEEEEEET------TEEEEESSS
T ss_pred HHHHHHHHHHCCCCcEEEEEEcCCCCCccCCCCCCCEEEEEEEEC------CEEEEEecC
Confidence 4568999999999999887653222 3567678888777765 458999983
No 15
>1gef_A Holliday junction resolvase; HJC, hydrolase; 2.00A {Pyrococcus furiosus} SCOP: c.52.1.18 PDB: 1ipi_A
Probab=28.96 E-value=91 Score=25.10 Aligned_cols=45 Identities=16% Similarity=0.291 Sum_probs=34.6
Q ss_pred HHHHHHHHHhCCCceEEeeecCCCCCCCCCCccceEEEEEccCCCCCCeEEEEecCcccce
Q 023044 91 KKWLVRKLKMDGFNASLCHTSWATSSGCPAGDYEYIDIMVEDEQTEEPIRLIVDIDFKSQF 151 (288)
Q Consensus 91 rr~v~~~Lr~~GydAaiCkSrW~~s~~~paG~yEYIdVi~~~~~~~~~~r~IVD~dFR~qF 151 (288)
-+.++..|+..||..- ..|.. + -||+|... ++.-++||+-.|...
T Consensus 9 E~~A~~~L~~~Gy~il---rn~r~------~---EIDIIA~~----~~~lvfVEVK~R~~~ 53 (123)
T 1gef_A 9 ERELIKLLEKHGFAVV---RSAGS------K---KVDLVAGN----GKKYLCIEVKVTKKD 53 (123)
T ss_dssp HHHHHHHHHHTTCEEE---EBGGG------S---SCSEEEEC----SSCEEEEEEEEESSS
T ss_pred HHHHHHHHHHCCCEEE---EecCC------C---CceEEEEe----CCEEEEEEEEeCCCC
Confidence 3568899999999966 46753 1 78998863 357899999998865
No 16
>1y88_A Hypothetical protein AF1548; APC5567, structural genomics, protein structure INIT PSI, midwest center for structural genomics center, MCSG; 1.85A {Archaeoglobus fulgidus} SCOP: a.60.4.3 c.52.1.30
Probab=28.47 E-value=75 Score=27.76 Aligned_cols=102 Identities=15% Similarity=0.179 Sum_probs=61.7
Q ss_pred chhhHHHHHHHHHHhCCCceEEeee-cCCCCCCCCCCccceEEEEEccCCCCCCeEEEEecCcccceeeccCc--HHHH-
Q 023044 86 SSNGLKKWLVRKLKMDGFNASLCHT-SWATSSGCPAGDYEYIDIMVEDEQTEEPIRLIVDIDFKSQFELARPT--QAYK- 161 (288)
Q Consensus 86 ~~~~lrr~v~~~Lr~~GydAaiCkS-rW~~s~~~paG~yEYIdVi~~~~~~~~~~r~IVD~dFR~qFeIArpT--~~Y~- 161 (288)
....+-+.++..|+..||.+..... .|.+ + +-=|||+... .+..++|+.-.|. -....+. +.|.
T Consensus 16 ~g~~fE~~va~~L~~~Gy~i~~~v~v~~r~------~-dggIDIIA~k----~~~~v~VEvK~r~-~v~~~~V~~~~~~~ 83 (199)
T 1y88_A 16 NLYFQGHMVARLLEEHGFETKTNVIVQGNC------V-EQEIDVVAER----DGERYMIECKFHN-IPVYTGLKEAMYTY 83 (199)
T ss_dssp CHHHHHHHHHHHHHTTTCEEEEEEEEECSS------S-EEEEEEEEEE----TTEEEEEEECCCS-SSCEECHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCEEEEeecccCCC------C-CCcEEEEEEE----CCEEEEEEecccc-CCCCcchhHHHHhh
Confidence 3455677899999999999664211 5643 2 3348998863 3589999999988 4444444 3452
Q ss_pred HHHhhCC-----CceeeChHHHHHHHHHHHHHHHHHHHHcCCCCCCCCch
Q 023044 162 ELTNILP-----SIFVGQEEKLNKIISLLCSAAKQSLKERGLHIPPWRTS 206 (288)
Q Consensus 162 ~ll~~LP-----~vFVG~~~rL~~lV~~mc~a~k~S~k~~Gm~lPPWRk~ 206 (288)
.....+. ..+|-|-.++.+ .|++-.+..++.|=-|...
T Consensus 84 ~~~~d~~~~~a~~g~VVTn~~FT~-------~A~~~A~~~~I~Li~wd~p 126 (199)
T 1y88_A 84 ARFLDVEKHGFTQPWIFTNTKFSE-------EAKKYAGCVGIKLTGWSYP 126 (199)
T ss_dssp HHHHHHGGGTCSEEEEECSSEECH-------HHHHHHHHHTCEEECSSCS
T ss_pred hhhhhhhccCCCEEEEEECCCCCH-------HHHHHHHHCCcEEEECCCC
Confidence 2222221 224444444432 4555667788888777543
No 17
>3se7_A VANA; alpha-beta structure, D-alanine-D-lactate ligase, ligase; HET: ATP; 3.07A {}
Probab=26.85 E-value=2.9e+02 Score=24.45 Aligned_cols=48 Identities=19% Similarity=0.179 Sum_probs=32.2
Q ss_pred HHHHHHhhCCCceeeChHHHHHHHHHHHHHHHHHHHHcCCCCCCCCchh
Q 023044 159 AYKELTNILPSIFVGQEEKLNKIISLLCSAAKQSLKERGLHIPPWRTST 207 (288)
Q Consensus 159 ~Y~~ll~~LP~vFVG~~~rL~~lV~~mc~a~k~S~k~~Gm~lPPWRk~~ 207 (288)
..+.+++.+-.-|+|+.....++.. ==..+|+-|++.|.++|||+...
T Consensus 107 ~iq~~le~~gip~~g~~~~a~~~~~-dK~~~k~~l~~~Gip~p~~~~~~ 154 (346)
T 3se7_A 107 AIQGLLELSGIPYVGCDIQSSALCM-DKSLTYLVARSAGIATPNFWTVT 154 (346)
T ss_dssp HHHHHHHHHCCCBSSCCHHHHHHHH-SHHHHHHHHHHTTCBCCCEEEEE
T ss_pred HHHHHHHHcCCCeeCcCHHHHHHHh-CHHHHHHHHHHcCcCcCCEEEEc
Confidence 4678888877779998543322210 01246778899999999998543
No 18
>3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, A binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium} PDB: 3q1k_A*
Probab=24.02 E-value=79 Score=28.64 Aligned_cols=47 Identities=23% Similarity=0.312 Sum_probs=32.9
Q ss_pred HHHHHHhhCCCceeeChHHHHHHHHHHHHHHHHHHHHcCCCCCCCCch
Q 023044 159 AYKELTNILPSIFVGQEEKLNKIISLLCSAAKQSLKERGLHIPPWRTS 206 (288)
Q Consensus 159 ~Y~~ll~~LP~vFVG~~~rL~~lV~~mc~a~k~S~k~~Gm~lPPWRk~ 206 (288)
..+.+++.+---|+|+...-.++.. ==..+|+-|++.|.++|||+..
T Consensus 115 ~iq~~le~~gip~~G~~~~a~~~~~-DK~~~k~~l~~~Gip~p~~~~~ 161 (364)
T 3i12_A 115 SLQGMLRVANLPFVGSDVLSSAACM-DKDVAKRLLRDAGLNIAPFITL 161 (364)
T ss_dssp HHHHHHHHTTCCBSSCCHHHHHHHH-CHHHHHHHHHHTTCCBCCEEEE
T ss_pred HHHHHHHHcCCCccCCCHHHHHHHH-CHHHHHHHHHHCCCCCCCEEEE
Confidence 3678998888889998643332211 1135677899999999999754
No 19
>1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B*
Probab=23.93 E-value=1.1e+02 Score=27.20 Aligned_cols=47 Identities=19% Similarity=0.163 Sum_probs=30.4
Q ss_pred HHHHHHhhCCCceeeChHHHHHHHHHHHHHHHHHHHHcCCCCCCCCch
Q 023044 159 AYKELTNILPSIFVGQEEKLNKIISLLCSAAKQSLKERGLHIPPWRTS 206 (288)
Q Consensus 159 ~Y~~ll~~LP~vFVG~~~rL~~lV~~mc~a~k~S~k~~Gm~lPPWRk~ 206 (288)
..+.+++.+-.-|+|+......+.. ==..+++-|++.|.++|||+..
T Consensus 107 ~~~~~le~~gip~~g~~~~~~~~~~-dK~~~k~~l~~~Gip~p~~~~~ 153 (343)
T 1e4e_A 107 SIQGLFELSGIPFVGCDIQSSAICM-DKSLTYIVAKNAGIATPAFWVI 153 (343)
T ss_dssp HHHHHHHHHTCCBSSCCHHHHHHHH-SHHHHHHHHHHTTCBCCCEEEE
T ss_pred HHHHHHHHcCCCccCCCHHHHHHHh-CHHHHHHHHHHCCCCcCCEEEE
Confidence 3567777776667887543322211 0135677889999999999753
No 20
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=20.26 E-value=49 Score=24.36 Aligned_cols=28 Identities=25% Similarity=0.579 Sum_probs=21.8
Q ss_pred hhhHHHHHHHHHHhCCCceEE--eeecCCC
Q 023044 87 SNGLKKWLVRKLKMDGFNASL--CHTSWAT 114 (288)
Q Consensus 87 ~~~lrr~v~~~Lr~~GydAai--CkSrW~~ 114 (288)
...+=..|+..|+..||+-+- |+.+|+.
T Consensus 32 ~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~n 61 (86)
T 2ebi_A 32 NKHLWEQISSKMREKGFDRSPDMCTDKWRN 61 (86)
T ss_dssp CHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 455667899999999987554 8888854
Done!