BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023045
(288 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9C9G4|ENDO2_ARATH Endonuclease 2 OS=Arabidopsis thaliana GN=ENDO2 PE=2 SV=1
Length = 290
Score = 435 bits (1118), Expect = e-121, Method: Compositional matrix adjust.
Identities = 203/287 (70%), Positives = 237/287 (82%), Gaps = 2/287 (0%)
Query: 2 GLRAYQILTCVSFFVLFPVIHCWGNDGHVAVCRIAQSRLREAAADAVKQLLPESADNDLG 61
GL ++ V P IH WG +GH +C+IAQ+RL E AA AVK+LLPESA+ DL
Sbjct: 6 GLHVVMMIITVWLLYAAPNIHGWGKEGHEIICKIAQTRLDETAAKAVKELLPESAEGDLS 65
Query: 62 SVCTWADHVKFHYHWSSALHFIDTPDNLCTYQYNRDCKDEDGVKGRCVAGAINNYTTQLL 121
S+C WAD VKF YHWSS LH+I+TPD C+YQYNRDCKDE G KGRCVAGAI NYTTQLL
Sbjct: 66 SLCLWADRVKFRYHWSSPLHYINTPD-ACSYQYNRDCKDESGEKGRCVAGAIYNYTTQLL 124
Query: 122 SYNSASSSHSEYNLTEALLFLSHFIGDIHQPLHVGFTSDRGGNTIDVHWYTRKQVLHHVW 181
SY +A+SS S+YNLTEALLF+SHF+GDIHQPLHV + SD+GGNTI+VHWYTRK LHH+W
Sbjct: 125 SYKTAASSQSQYNLTEALLFVSHFMGDIHQPLHVSYASDKGGNTIEVHWYTRKANLHHIW 184
Query: 182 DNNIIETAEERFYNSNIDGLVDAIQQNITTDWADLVKKWETCSANNTACPDVYASEGIKA 241
D+NIIETAE YNS ++G+VDA+++NITT+WAD VK+WETC+ TACPD+YASEGI+A
Sbjct: 185 DSNIIETAEADLYNSALEGMVDALKKNITTEWADQVKRWETCT-KKTACPDIYASEGIQA 243
Query: 242 ACDWAYKGVSEGSVLEDEYFNSRLPIVKLRLAQGGVRLAATLNRIFG 288
ACDWAYKGV+EG LEDEYF SRLPIV RLAQGGVRLAATLNRIFG
Sbjct: 244 ACDWAYKGVTEGDTLEDEYFYSRLPIVYQRLAQGGVRLAATLNRIFG 290
>sp|F4JJL0|ENDO4_ARATH Endonuclease 4 OS=Arabidopsis thaliana GN=ENDO4 PE=3 SV=1
Length = 299
Score = 335 bits (860), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 156/268 (58%), Positives = 194/268 (72%), Gaps = 2/268 (0%)
Query: 23 CWGNDGHVAVCRIAQSRLREAAADAVKQLLPESADNDLGSVCTWADHVKFHYHW--SSAL 80
CWG +GH VC+IA+S E AVK+LLP+SAD DL SVC+W D +K H+ W +S L
Sbjct: 24 CWGKEGHYTVCKIAESYFEEETVAAVKKLLPKSADGDLASVCSWPDEIKHHWQWRWTSPL 83
Query: 81 HFIDTPDNLCTYQYNRDCKDEDGVKGRCVAGAINNYTTQLLSYNSASSSHSEYNLTEALL 140
H++DTPD C Y+Y RDC D + RCV GAI NYT QL+S + S + YNLTEAL+
Sbjct: 84 HYVDTPDYRCNYEYCRDCHDTHKNQDRCVTGAIFNYTMQLMSASENSDTIVHYNLTEALM 143
Query: 141 FLSHFIGDIHQPLHVGFTSDRGGNTIDVHWYTRKQVLHHVWDNNIIETAEERFYNSNIDG 200
FLSHFIGDIHQPLHVGF D GGNTI V WY RK LHHVWDN IIE+A + +YN ++
Sbjct: 144 FLSHFIGDIHQPLHVGFLGDEGGNTITVRWYRRKTNLHHVWDNMIIESALKTYYNKSLPL 203
Query: 201 LVDAIQQNITTDWADLVKKWETCSANNTACPDVYASEGIKAACDWAYKGVSEGSVLEDEY 260
+++A+Q N+T DW++ V WE+C N TACP+ YASE I AC +AY+ + G+ L D+Y
Sbjct: 204 MIEALQANLTNDWSNDVPLWESCQLNQTACPNPYASESINLACKYAYRNATPGTTLGDDY 263
Query: 261 FNSRLPIVKLRLAQGGVRLAATLNRIFG 288
F SRLPIV+ RLAQGG+RLAATLNRIF
Sbjct: 264 FLSRLPIVEKRLAQGGIRLAATLNRIFS 291
>sp|Q8LDW6|ENDO3_ARATH Endonuclease 3 OS=Arabidopsis thaliana GN=ENDO3 PE=2 SV=1
Length = 294
Score = 308 bits (788), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 150/281 (53%), Positives = 192/281 (68%), Gaps = 10/281 (3%)
Query: 12 VSFFVLFPVIH---CWGNDGHVAVCRIAQSRLREAAADAVKQLLPESADNDLGSVCTWAD 68
VS VL +++ CWG+ GH AVC+IAQS E AVK+LLPESA+ +L +VC+W D
Sbjct: 10 VSILVLTQLVNGALCWGDAGHYAVCKIAQSYFEEDTVVAVKKLLPESANGELAAVCSWPD 69
Query: 69 HVKF--HYHWSSALHFIDTPDNLCTYQYNRDCKDEDGVKGRCVAGAINNYTTQLLSYNSA 126
+K + W+SALHF DTPD C Y+Y+RDC K CV GAI NYT QL+S +
Sbjct: 70 EIKKLPQWRWTSALHFADTPDYKCNYEYSRDCP-----KDWCVTGAIFNYTNQLMSTSEN 124
Query: 127 SSSHSEYNLTEALLFLSHFIGDIHQPLHVGFTSDRGGNTIDVHWYTRKQVLHHVWDNNII 186
S S YNLTEAL+FLSH++GDIHQPLH GF D GGN I VHWY ++ LH VWD+ II
Sbjct: 125 SQSIVHYNLTEALMFLSHYMGDIHQPLHEGFIGDLGGNKIKVHWYNQETNLHRVWDDMII 184
Query: 187 ETAEERFYNSNIDGLVDAIQQNITTDWADLVKKWETCSANNTACPDVYASEGIKAACDWA 246
E+A E +YNS++ ++ +Q + W++ V WE+C N TACP+ YASE I AC +A
Sbjct: 185 ESALETYYNSSLPRMIHELQAKLKNGWSNDVPSWESCQLNQTACPNPYASESIDLACKYA 244
Query: 247 YKGVSEGSVLEDEYFNSRLPIVKLRLAQGGVRLAATLNRIF 287
Y+ + G+ L D YF SRLP+V+ RLAQGG+RLA TLNRIF
Sbjct: 245 YRNATAGTTLGDYYFVSRLPVVEKRLAQGGIRLAGTLNRIF 285
>sp|Q9SXA6|ENDO1_ARATH Endonuclease 1 OS=Arabidopsis thaliana GN=ENDO1 PE=1 SV=1
Length = 305
Score = 302 bits (774), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 143/270 (52%), Positives = 182/270 (67%), Gaps = 5/270 (1%)
Query: 21 IHCWGNDGHVAVCRIAQSRLREAAADAVKQLLPESADNDLGSVCTWADHVK--FHYHWSS 78
+ W +GH+ CRIAQ+ L A V+ LLP+ DL ++C W D ++ + Y W+S
Sbjct: 26 VRSWSKEGHILTCRIAQNLLEAGPAHVVENLLPDYVKGDLSALCVWPDQIRHWYKYRWTS 85
Query: 79 ALHFIDTPDNLCTYQYNRDCKDEDGVKGRCVAGAINNYTTQLLSYNSASSSHSEYNLTEA 138
LH+IDTPD C+Y+Y+RDC D+ G+K CV GAI N+T+QL Y +S YN+TEA
Sbjct: 86 HLHYIDTPDQACSYEYSRDCHDQHGLKDMCVDGAIQNFTSQLQHYGEGTSD-RRYNMTEA 144
Query: 139 LLFLSHFIGDIHQPLHVGFTSDRGGNTIDVHWYTRKQVLHHVWDNNIIETAEERFYNSNI 198
LLFLSHF+GDIHQP+HVGFTSD GGNTID+ WY K LHHVWD II TA + Y+ N+
Sbjct: 145 LLFLSHFMGDIHQPMHVGFTSDEGGNTIDLRWYKHKSNLHHVWDREIILTALKENYDKNL 204
Query: 199 DGLVDAIQQNITTD-WADLVKKWETCSANNTACPDVYASEGIKAACDWAYKGVSEGSVLE 257
D L + +++NIT W D + W C+ + ACP YASE IK AC W YKGV G L
Sbjct: 205 DLLQEDLEKNITNGLWHDDLSSWTECN-DLIACPHKYASESIKLACKWGYKGVKSGETLS 263
Query: 258 DEYFNSRLPIVKLRLAQGGVRLAATLNRIF 287
+EYFN+RLPIV R+ QGGVRLA LNR+F
Sbjct: 264 EEYFNTRLPIVMKRIVQGGVRLAMILNRVF 293
>sp|F4JJL3|ENDO5_ARATH Endonuclease 5 OS=Arabidopsis thaliana GN=ENDO5 PE=2 SV=1
Length = 296
Score = 298 bits (763), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 145/285 (50%), Positives = 191/285 (67%), Gaps = 6/285 (2%)
Query: 9 LTCVSFFVLFPVIH---CWGNDGHVAVCRIAQSRLREAAADAVKQLLPESADND-LGSVC 64
L VS VL ++H CWG DGH VC++A+ + AVK+LLPES D L C
Sbjct: 3 LWIVSVLVLTHLVHGALCWGKDGHYTVCKLAEGFFEDDTIAAVKKLLPESVDGGGLADFC 62
Query: 65 TWADHVK--FHYHWSSALHFIDTPDNLCTYQYNRDCKDEDGVKGRCVAGAINNYTTQLLS 122
+W D +K + W+S LH+++TP+ C Y+Y RDC D K CV GAI NYT QL+S
Sbjct: 63 SWPDEIKKLSQWQWTSTLHYVNTPEYRCNYEYCRDCHDTHKHKDWCVTGAIFNYTNQLMS 122
Query: 123 YNSASSSHSEYNLTEALLFLSHFIGDIHQPLHVGFTSDRGGNTIDVHWYTRKQVLHHVWD 182
+ S + YNLTEALLFLSH++GD+HQPLH GF D GGNTI V+WY K LHHVWD
Sbjct: 123 ASENSQNIVHYNLTEALLFLSHYMGDVHQPLHTGFLGDLGGNTIIVNWYHNKSNLHHVWD 182
Query: 183 NNIIETAEERFYNSNIDGLVDAIQQNITTDWADLVKKWETCSANNTACPDVYASEGIKAA 242
N II++A E +YNS++ ++ A+Q + W++ V W++C + ACP++YASE I A
Sbjct: 183 NMIIDSALETYYNSSLPHMIQALQAKLKNGWSNDVPSWKSCHFHQKACPNLYASESIDLA 242
Query: 243 CDWAYKGVSEGSVLEDEYFNSRLPIVKLRLAQGGVRLAATLNRIF 287
C +AY+ + G+ L DEYF SRLP+V+ RLAQGG+RLAATLNRIF
Sbjct: 243 CKYAYRNATPGTTLGDEYFLSRLPVVEKRLAQGGIRLAATLNRIF 287
>sp|P24021|NUS1_ASPOR Nuclease S1 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40)
GN=nucS PE=1 SV=2
Length = 287
Score = 112 bits (279), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 95/293 (32%), Positives = 131/293 (44%), Gaps = 43/293 (14%)
Query: 15 FVLFPVIHCWGNDGHVAVCRIAQSRLREAAADAVKQLLPESADNDLGSVCTWADHVKF-- 72
L + + WGN GH V IAQS + + + +L + + + L +V TWAD K+
Sbjct: 12 LALAQLTYGWGNLGHETVAYIAQSFVASSTESFCQNILGDDSTSYLANVATWADTYKYTD 71
Query: 73 HYHWSSALHFIDTPDNL---CTYQYNRDCKDEDGVKGRCVAGAINNYTTQLLSYNSASSS 129
+S HFID DN C Y+RDC G G C AI NYT LL + S +
Sbjct: 72 AGEFSKPYHFIDAQDNPPQSCGVDYDRDC----GSAG-CSISAIQNYTNILLESPNGSEA 126
Query: 130 HSEYNLTEALLFLSHFIGDIHQPLHVGFTSDRGGNTIDVHWYTRKQVLHHVWDNNIIETA 189
AL F+ H IGDIHQPLH + GGN IDV + LHH+WD N+ E A
Sbjct: 127 ------LNALKFVVHIIGDIHQPLH-DENLEAGGNGIDVTYDGETTNLHHIWDTNMPEEA 179
Query: 190 EERFYNSNIDGLVDAIQQNITT--------DWADLVKKWETCS--------ANNTACPDV 233
+ S D + + I T W D + + S AN C V
Sbjct: 180 AGGYSLSVAKTYADLLTERIKTGTYSSKKDSWTDGIDIKDPVSTSMIWAADANTYVCSTV 239
Query: 234 YASEGIKAACDWAYKGVSEGSVLEDEYFNSRLPIVKLRLAQGGVRLAATLNRI 286
+G+ AY ++ L EY++ P+ + +A+ G RLAA L+ I
Sbjct: 240 L-DDGL------AYINSTD---LSGEYYDKSQPVFEELIAKAGYRLAAWLDLI 282
>sp|P24504|NUP3_PENSQ Nuclease PA3 OS=Penicillium sp. PE=1 SV=1
Length = 270
Score = 91.7 bits (226), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 93/292 (31%), Positives = 129/292 (44%), Gaps = 54/292 (18%)
Query: 24 WGNDGHVAVCRIAQSRLREAAADAVKQLLPESADNDLGSVCTWADHVKFHY--HWSSALH 81
WG GH V +AQ + AA + +L S+ + L S+ +WAD + WS++LH
Sbjct: 1 WGALGHATVAYVAQHYVSPEAASWAQGILGSSSSSYLASIASWADEYRLTSAGKWSASLH 60
Query: 82 FIDTPDNL---CTYQYNRDCKDEDGVKGRCVAGAINNYTTQLLSYNSASSSHSEYNLTEA 138
FID DN C Y RDC G G C AI NYT ++ + SS S N EA
Sbjct: 61 FIDAEDNPPTNCNVDYERDC----GSSG-CSISAIANYTQRV-----SDSSLSSENHAEA 110
Query: 139 LLFLSHFIGDIHQPLHVGFTSDRGGNTIDVHWYTRKQVLHHVWD---------------- 182
L FL HFIGD+ QPLH + GGN I+V + LH WD
Sbjct: 111 LRFLVHFIGDMTQPLHDEAYA-VGGNKINVTFDGYHDNLHSDWDTYMPQKLIGGHALSDA 169
Query: 183 ----NNIIETAEERFYNSNIDGLV--DAIQQNITTDWADLVKKWETCSANNTACPDVYAS 236
+++ E Y + G + D I + ITT +W + AN C V
Sbjct: 170 ESWAKTLVQNIESGNYTAQATGWIKGDNISEPITT-----ATRWAS-DANALVCT-VVMP 222
Query: 237 EGIKAACDWAYKGVSEGSVLEDEYFNSRLPIVKLRLAQGGVRLAATLNRIFG 288
G A + L Y++S + ++L++A+GG RLA +N I G
Sbjct: 223 HGAAAL---------QTGDLYPTYYDSVIDTIELQIAKGGYRLANWINEIHG 265
>sp|P24289|NUP1_PENCI Nuclease P1 OS=Penicillium citrinum PE=1 SV=1
Length = 270
Score = 90.5 bits (223), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 93/292 (31%), Positives = 129/292 (44%), Gaps = 54/292 (18%)
Query: 24 WGNDGHVAVCRIAQSRLREAAADAVKQLLPESADNDLGSVCTWADHVKFHY--HWSSALH 81
WG GH V +AQ + AA + +L S+ + L S+ +WAD + WS++LH
Sbjct: 1 WGALGHATVAYVAQHYVSPEAASWAQGILGSSSSSYLASIASWADEYRLTSAGKWSASLH 60
Query: 82 FIDTPDNL---CTYQYNRDCKDEDGVKGRCVAGAINNYTTQLLSYNSASSSHSEYNLTEA 138
FID DN C Y RDC G G C AI NYT ++ + SS S N EA
Sbjct: 61 FIDAEDNPPTNCNVDYERDC----GSSG-CSISAIANYTQRV-----SDSSLSSENHAEA 110
Query: 139 LLFLSHFIGDIHQPLHVGFTSDRGGNTIDVHWYTRKQVLHHVWD---------------- 182
L FL HFIGD+ QPLH + GGN I+V + LH WD
Sbjct: 111 LRFLVHFIGDMTQPLHDEAYA-VGGNKINVTFDGYHDNLHSDWDTYMPQKLIGGHALSDA 169
Query: 183 ----NNIIETAEERFYNSNIDGLV--DAIQQNITTDWADLVKKWETCSANNTACPDVYAS 236
+++ E Y + G + D I + ITT +W + AN C V
Sbjct: 170 ESWAKTLVQNIESGNYTAQAIGWIKGDNISEPITT-----ATRWAS-DANALVCT-VVMP 222
Query: 237 EGIKAACDWAYKGVSEGSVLEDEYFNSRLPIVKLRLAQGGVRLAATLNRIFG 288
G A + L Y++S + ++L++A+GG RLA +N I G
Sbjct: 223 HGAAAL---------QTGDLYPTYYDSVIDTIELQIAKGGYRLANWINEIHG 265
>sp|P33376|PHLD_BACCE Phospholipase C OS=Bacillus cereus GN=cerA PE=3 SV=1
Length = 283
Score = 33.5 bits (75), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 22/81 (27%)
Query: 79 ALHFIDTPDNLCTY-QYNRDCKDEDGVKGRCVAGAINNYTTQLLSYNSASSSHSEYNLTE 137
A HF D PDN TY Y + K E G K +AG S+ ++ +
Sbjct: 105 ASHFYD-PDNGKTYIPYAKQAK-ETGAKYFKLAG----------------ESYKNKDMKQ 146
Query: 138 ALLFLS---HFIGDIHQPLHV 155
A +L H++GD++QP+H
Sbjct: 147 AFFYLGLSLHYLGDVNQPMHA 167
>sp|C5DGT3|BLI1_LACTC Biogenesis of lysosome-related organelles complex 1 subunit BLI1
OS=Lachancea thermotolerans (strain ATCC 56472 / CBS
6340 / NRRL Y-8284) GN=BLI1 PE=3 SV=1
Length = 113
Score = 32.3 bits (72), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Query: 191 ERFYNSNIDGLVDAIQQNITTDWADLVKKWETCSANNTACPDVYASEGIKAACDWAYKGV 250
ER +I+G +D +Q+ + + A + +E+ + ++ C D G+KA + +
Sbjct: 9 ERVLRQHIEGCIDQVQEYVDLESAQAISSFESKAVDHFRCLD-----GLKAQYNTREDKI 63
Query: 251 SEGSVLEDEY 260
SE L+ EY
Sbjct: 64 SEFKRLQSEY 73
>sp|O75452|RDH16_HUMAN Retinol dehydrogenase 16 OS=Homo sapiens GN=RDH16 PE=1 SV=2
Length = 317
Score = 31.2 bits (69), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 40/90 (44%), Gaps = 6/90 (6%)
Query: 168 VHWYTRKQVLHHVWDNNIIETAEERFYNSNIDGLVDA-----IQQNITTDWADLVKKWET 222
+HWY +QVL H+ D + T + + + +DA + +T A+ ++ +T
Sbjct: 15 LHWYRERQVLSHLRDKYVFITGCDSGFGKLLARQLDARGLRVLAACLTEKGAEQLRG-QT 73
Query: 223 CSANNTACPDVYASEGIKAACDWAYKGVSE 252
T DV +E + AA W + V +
Sbjct: 74 SDRLETVTLDVTKTESVAAAAQWVKECVRD 103
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.135 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 109,452,048
Number of Sequences: 539616
Number of extensions: 4502482
Number of successful extensions: 10011
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 9977
Number of HSP's gapped (non-prelim): 19
length of query: 288
length of database: 191,569,459
effective HSP length: 116
effective length of query: 172
effective length of database: 128,974,003
effective search space: 22183528516
effective search space used: 22183528516
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)