Query 023045
Match_columns 288
No_of_seqs 133 out of 527
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 08:03:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023045.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023045hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02265 S1-P1_nuclease: S1/P1 100.0 4.7E-69 1E-73 481.7 11.8 246 24-288 1-252 (252)
2 smart00770 Zn_dep_PLPC Zinc de 96.8 0.0028 6E-08 56.3 6.2 114 27-156 38-154 (241)
3 KOG3189 Phosphomannomutase [Li 56.7 5.8 0.00013 34.4 1.3 39 132-180 191-236 (252)
4 PRK11546 zraP zinc resistance 47.9 8.4 0.00018 31.5 0.8 45 8-53 11-57 (143)
5 PF08048 RepA1_leader: Tap Rep 41.0 34 0.00073 19.0 2.2 22 3-24 2-23 (25)
6 PF08810 KapB: Kinase associat 34.7 17 0.00038 28.3 0.7 72 147-241 32-103 (112)
7 TIGR03475 tap_IncFII_lead RepA 32.0 57 0.0012 18.3 2.2 23 3-25 2-24 (26)
8 PRK12750 cpxP periplasmic repr 31.4 62 0.0013 27.2 3.6 25 29-53 42-66 (170)
9 PF07172 GRP: Glycine rich pro 31.2 35 0.00075 25.9 1.8 12 1-13 1-12 (95)
10 COG0158 Fbp Fructose-1,6-bisph 23.7 40 0.00086 31.2 1.1 40 111-156 211-250 (326)
11 PF13758 Prefoldin_3: Prefoldi 23.3 62 0.0013 24.8 1.9 22 259-280 78-99 (99)
12 PF13801 Metal_resist: Heavy-m 22.8 88 0.0019 23.4 2.9 23 31-53 33-55 (125)
13 PF00882 Zn_dep_PLPC: Zinc dep 21.1 93 0.002 24.8 2.8 45 133-186 80-124 (163)
14 KOG3688 Cyclic GMP phosphodies 20.4 2.3E+02 0.0051 27.7 5.5 52 111-189 337-388 (554)
No 1
>PF02265 S1-P1_nuclease: S1/P1 Nuclease; InterPro: IPR003154 This family contains both S1 and P1 nucleases (3.1.30.1 from EC) which cleave RNA and single stranded DNA with no base specificity. ; GO: 0003676 nucleic acid binding, 0004519 endonuclease activity, 0006308 DNA catabolic process; PDB: 1AK0_A.
Probab=100.00 E-value=4.7e-69 Score=481.70 Aligned_cols=246 Identities=39% Similarity=0.738 Sum_probs=190.9
Q ss_pred cChhhHHHHHHHHHhccCHHHHHHHHhhCCCCCCCccccccccccccCc---cCCCCCCcccccCCC--CCCCcccCCCc
Q 023045 24 WGNDGHVAVCRIAQSRLREAAADAVKQLLPESADNDLGSVCTWADHVKF---HYHWSSALHFIDTPD--NLCTYQYNRDC 98 (288)
Q Consensus 24 Wg~~GH~~Va~iA~~~L~~~~~~~l~~lL~~~~~~~~~~~a~WaD~ir~---~~~~~~~wHyid~p~--~~~~~~~~~dc 98 (288)
||..|||+||+||+++|+|+++++|+++|+..+..+|+++|+|||+||+ +++++++|||+|+|. .+|++.+..+|
T Consensus 1 Wg~~GH~~va~iA~~~L~~~~~~~v~~il~~~~~~~l~~~A~WaD~ir~~~~~~~~~~~wHyi~~~~~~~~~~~~~~~~~ 80 (252)
T PF02265_consen 1 WGAEGHRVVAEIAQRHLSPEARKKVDKILGGDSSESLAEAATWADDIRSDPAQYKWTAPWHYINQPDNKYPRDFQPARDC 80 (252)
T ss_dssp --HHHHHHHHHHHHHHS-HHHHHHHHHHHT--STTTTGGGTTHHHHHHT-STTTGGGGGGG------BTTB----HHHHS
T ss_pred CCcHHHHHHHHHHHHHCCHHHHHHHHHHhCccccccHHHHHHhHHHhhccccccCcCCCccccCCccccccccccccccC
Confidence 9999999999999999999999999999996545899999999999998 579999999999998 45566555778
Q ss_pred cccCCCCCCcHHHHHHHHHHHhccCCCCCCCcccccHHHHHHHHHHHHhccCCCCc-cCCCCCCCCCceEEeeccccCCc
Q 023045 99 KDEDGVKGRCVAGAINNYTTQLLSYNSASSSHSEYNLTEALLFLSHFIGDIHQPLH-VGFTSDRGGNTIDVHWYTRKQVL 177 (288)
Q Consensus 99 ~~~~~~~~~cv~~ai~~~~~~L~~~~~~~~~~~~~~~~~aLk~LvHlvGDiHQPLH-~~~~~D~GGN~~~V~~~g~~~nL 177 (288)
+ +++|++++|.+++++|++.+.+. .+++++||||+||||||||||| ++++||+|||+++|+++|+++||
T Consensus 81 ~-----~~~~~~~ai~~~~~~L~~~~~~~-----~~~~~aL~~LvH~vGDiHQPLH~~~~~~D~GGN~~~v~~~g~~~nL 150 (252)
T PF02265_consen 81 P-----NGGCVVSAIKNYTSRLKDTSTSK-----AERAFALKFLVHLVGDIHQPLHTVGRKGDRGGNDIKVKFNGKKTNL 150 (252)
T ss_dssp ------TT--HHHHHHHHHHHHT-TTS-H-----HHHHHHHHHHHHHHHHTTSGGGG--H--HHHTTT-EEEETTEEEEH
T ss_pred C-----CCCcHHHHHHHHHHHHhccCCCc-----HHHHHHHHHHHHHhhhccCccccccccccCCCCeeEEEecCCcCcH
Confidence 4 69999999999999999987663 4799999999999999999999 67899999999999999999999
Q ss_pred hhhhhhhhHhHHHHhccCCCHHHHHHHHHHhhhhhhHHHHHhHhhccCCCCCChHHHHHHHHHHHHHhccCCCCCCCCCC
Q 023045 178 HHVWDNNIIETAEERFYNSNIDGLVDAIQQNITTDWADLVKKWETCSANNTACPDVYASEGIKAACDWAYKGVSEGSVLE 257 (288)
Q Consensus 178 H~~WDs~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~w~~~~~~~~~~~~~Wa~Es~~la~~~vY~~~~~~~~ls 257 (288)
|++||++|++......+..+..++++.|.+.++. +..+.|.+ .+|.+|++||++++|+++|+.++.+.+|+
T Consensus 151 H~~WD~~l~~~~~~~~~~~~~~~~a~~L~~~~~~---~~~~~~~~------~~~~~Wa~ES~~la~~~~y~~~~~~~~l~ 221 (252)
T PF02265_consen 151 HSVWDSGLINYMIKNKYQSSWQEYADELDRKITK---ESFKSWQP------GDPEDWANESHELACNIVYPGIKNGTELS 221 (252)
T ss_dssp HHHHHTHHHHHHHS--SHHHHHHHHHHHHHHHHH-------HHHH------HHHHHHHHHHHHHHHHTTSTT-SGGGS-T
T ss_pred HHHHHHHHHHhhccccchhhHHHHHHHHHhhccc---hhhhhhhh------hhHHHHHHHHHHHHHHHHhccCCCCCccC
Confidence 9999999998765533333566788888766653 45566754 48999999999999999998888888999
Q ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHHhhC
Q 023045 258 DEYFNSRLPIVKLRLAQGGVRLAATLNRIFG 288 (288)
Q Consensus 258 ~~Y~~~~~~v~~~ql~~AG~RLA~~Ln~i~~ 288 (288)
++|++++++++++||++||+|||.+||+||+
T Consensus 222 ~~Y~~~~~~~~~~ql~~AG~RLA~~Ln~i~~ 252 (252)
T PF02265_consen 222 DEYYTKARPVAEEQLAKAGYRLAAVLNEIFD 252 (252)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999995
No 2
>smart00770 Zn_dep_PLPC Zinc dependent phospholipase C (alpha toxin). This domain conveys a zinc dependent phospholipase C activity (EC 3.1.4.3). It is found in a monomeric phospholipase C of Bacillus cereus as well as in the alpha toxin of Clostridium perfringens and Clostridium bifermentans, which is involved in haemolysis and cell rupture. It is also found in a lecithinase of Listeria monocytogenes, which is involved in breaking the 2-membrane vacuoles that surround the bacterium. Structure information: PDB 1ca1.
Probab=96.82 E-value=0.0028 Score=56.28 Aligned_cols=114 Identities=19% Similarity=0.181 Sum_probs=65.6
Q ss_pred hhHHHHHHHHHhccCHHHHHHHH---hhCCCCCCCccccccccccccCccCCCCCCcccccCCCCCCCcccCCCccccCC
Q 023045 27 DGHVAVCRIAQSRLREAAADAVK---QLLPESADNDLGSVCTWADHVKFHYHWSSALHFIDTPDNLCTYQYNRDCKDEDG 103 (288)
Q Consensus 27 ~GH~~Va~iA~~~L~~~~~~~l~---~lL~~~~~~~~~~~a~WaD~ir~~~~~~~~wHyid~p~~~~~~~~~~dc~~~~~ 103 (288)
.-|..|..=|.+.|..+.-..-. ++|... ...+..-..|||.-...+.. ..+||.|...+ .+|-+.
T Consensus 38 ~tH~~I~~qAi~iL~nd~~~~~~~~~~~l~~y-~~~l~~G~~~aD~~~~~~~~-~~~HFydp~~~-~~yL~~-------- 106 (241)
T smart00770 38 NTHLFIVNQALEILKNDNNKNEYKLVEILKKN-YKELKLGSTYADYDNKYYDL-SQDHFYDPDTG-KNYLPG-------- 106 (241)
T ss_pred cHHHHHHHHHHHHHHhcCchhHHHHHHHHHHH-HHHHHcCCcccccCcccccc-ccccccCCCCC-CCCCCC--------
Confidence 56999999999999654221111 344321 24677889999986654442 36799986543 232111
Q ss_pred CCCCcHHHHHHHHHHHhccCCCCCCCcccccHHHHHHHHHHHHhccCCCCccC
Q 023045 104 VKGRCVAGAINNYTTQLLSYNSASSSHSEYNLTEALLFLSHFIGDIHQPLHVG 156 (288)
Q Consensus 104 ~~~~cv~~ai~~~~~~L~~~~~~~~~~~~~~~~~aLk~LvHlvGDiHQPLH~~ 156 (288)
..........+...-.+.-.... ...--+.|-.-.|+++|+-||+|+.
T Consensus 107 --~~~A~~~~~ky~~~A~~~~~~g~---~~~A~~~LG~a~Hy~~D~~~P~Ha~ 154 (241)
T smart00770 107 --FSNAKDTGRKYFKLALNEWKKGN---YKKAFFYLGRACHYLGDLSTPYHAN 154 (241)
T ss_pred --CCcHHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHhcCCccccc
Confidence 11233333334333322111110 1123466888899999999999985
No 3
>KOG3189 consensus Phosphomannomutase [Lipid transport and metabolism]
Probab=56.72 E-value=5.8 Score=34.39 Aligned_cols=39 Identities=33% Similarity=0.563 Sum_probs=27.6
Q ss_pred cccHHHHHHHH-------HHHHhccCCCCccCCCCCCCCCceEEeeccccCCchhh
Q 023045 132 EYNLTEALLFL-------SHFIGDIHQPLHVGFTSDRGGNTIDVHWYTRKQVLHHV 180 (288)
Q Consensus 132 ~~~~~~aLk~L-------vHlvGDiHQPLH~~~~~D~GGN~~~V~~~g~~~nLH~~ 180 (288)
-|++.++|+.| |||+||.-.| |||++.+-- ...|-=|+|
T Consensus 191 GWDKtyCLqhle~dgf~~IhFFGDkT~~---------GGNDyEIf~-dprtiGhsV 236 (252)
T KOG3189|consen 191 GWDKTYCLQHLEKDGFDTIHFFGDKTMP---------GGNDYEIFA-DPRTIGHSV 236 (252)
T ss_pred CcchhHHHHHhhhcCCceEEEeccccCC---------CCCcceeee-CCccccccc
Confidence 68999999987 5777776666 899999843 334444443
No 4
>PRK11546 zraP zinc resistance protein; Provisional
Probab=47.93 E-value=8.4 Score=31.50 Aligned_cols=45 Identities=9% Similarity=0.053 Sum_probs=29.4
Q ss_pred HHHHHHHHhhcccccccC--hhhHHHHHHHHHhccCHHHHHHHHhhCC
Q 023045 8 ILTCVSFFVLFPVIHCWG--NDGHVAVCRIAQSRLREAAADAVKQLLP 53 (288)
Q Consensus 8 ~~~~~~l~~~~~~a~AWg--~~GH~~Va~iA~~~L~~~~~~~l~~lL~ 53 (288)
+++|.+|+++.+.++||. -.||-. +.=.+..|||+.++++++|..
T Consensus 11 ~~ala~~~~~s~~a~A~~~~G~~~G~-~~~~~~~LT~EQQa~~q~I~~ 57 (143)
T PRK11546 11 LMALSALAMGSGSAFAHHHWGGGHGM-WQQNAAPLTTEQQAAWQKIHN 57 (143)
T ss_pred HHHHHHHHHhhhHHHHhhccCCCCCC-CccccccCCHHHHHHHHHHHH
Confidence 344555555666777772 233321 245677899999999999986
No 5
>PF08048 RepA1_leader: Tap RepA1 leader peptide; InterPro: IPR012605 This entry represents of the RepA1 leader peptide known as Tap found in IncFII plasmids. The frequency of replication of IncFII plasmid NR1 during the cell division cycle is regulated by the control of the synthesis of the plasmid-specific replication initiation protein (RepA1). When RepA1 is synthesised, it binds to the plasmid replication origin (ori) and effects the assembly of a replication complex composed of host proteins that mediate the replication of the plasmid [, ]. The tap gene encodes a 24-amino acid peptide whose translation is required for the translation of repA.
Probab=41.03 E-value=34 Score=19.04 Aligned_cols=22 Identities=18% Similarity=0.123 Sum_probs=14.0
Q ss_pred chHHHHHHHHHHHhhccccccc
Q 023045 3 LRAYQILTCVSFFVLFPVIHCW 24 (288)
Q Consensus 3 ~~~~~~~~~~~l~~~~~~a~AW 24 (288)
+||.|-.+++.+++.-..+..|
T Consensus 2 lrK~Q~~FLc~lLL~CniSAg~ 23 (25)
T PF08048_consen 2 LRKVQYLFLCHLLLPCNISAGR 23 (25)
T ss_pred chhHHHHHHHHHHhhhhccccc
Confidence 6899999888665543333344
No 6
>PF08810 KapB: Kinase associated protein B; InterPro: IPR014916 This bacterial protein forms an anti-parallel beta sheet with an extending alpha helical region. ; PDB: 1Y71_B.
Probab=34.72 E-value=17 Score=28.25 Aligned_cols=72 Identities=22% Similarity=0.396 Sum_probs=19.1
Q ss_pred hccCCCCccCCCCCCCCCceEEeeccccCCchhhhhhhhHhHHHHhccCCCHHHHHHHHHHhhhhhhHHHHHhHhhccCC
Q 023045 147 GDIHQPLHVGFTSDRGGNTIDVHWYTRKQVLHHVWDNNIIETAEERFYNSNIDGLVDAIQQNITTDWADLVKKWETCSAN 226 (288)
Q Consensus 147 GDiHQPLH~~~~~D~GGN~~~V~~~g~~~nLH~~WDs~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~w~~~~~~ 226 (288)
||+|.|--+ .|.|+....-|...=-..++..+++. |.....+|.+.|...+.. ...+
T Consensus 32 GDLHnP~q~-----------dvpfFHERkALs~~Ek~~ip~~~vk~-y~geip~Y~~SLq~A~~~----~~~~------- 88 (112)
T PF08810_consen 32 GDLHNPKQT-----------DVPFFHERKALSYREKTNIPKSMVKP-YEGEIPDYEESLQQALEK----LKEK------- 88 (112)
T ss_dssp --------------------------------TT-EEEEEGGGEEE---S----HHHHHHHHHHH----HHHT-------
T ss_pred cCCCCCCcC-----------CCcceehhhhcchHHHhcCCHHhccc-CCCCCCChHHHHHHHHHH----HHHH-------
Confidence 788888543 24454433333222112222222222 334455666777655542 2222
Q ss_pred CCCChHHHHHHHHHH
Q 023045 227 NTACPDVYASEGIKA 241 (288)
Q Consensus 227 ~~~~~~~Wa~Es~~l 241 (288)
.......||+-|.+.
T Consensus 89 L~~~~~~~a~~sL~~ 103 (112)
T PF08810_consen 89 LKEDDSEWAQRSLEN 103 (112)
T ss_dssp TTT--SHHHHHHHHH
T ss_pred HhccCcHHHHHHHHH
Confidence 113445799887764
No 7
>TIGR03475 tap_IncFII_lead RepA leader peptide Tap. This protein is a translated leader peptide that actis in the regulation of the expression of the plasmid replication protein RepA in incF2 group plasmids.
Probab=31.99 E-value=57 Score=18.33 Aligned_cols=23 Identities=17% Similarity=0.089 Sum_probs=14.3
Q ss_pred chHHHHHHHHHHHhhcccccccC
Q 023045 3 LRAYQILTCVSFFVLFPVIHCWG 25 (288)
Q Consensus 3 ~~~~~~~~~~~l~~~~~~a~AWg 25 (288)
+||.|-++++.++++--.+..|.
T Consensus 2 ~rKvQ~~FLc~~LL~cniSAg~c 24 (26)
T TIGR03475 2 LRKVQYLFLCHLLLPCNISAGRC 24 (26)
T ss_pred chhHHHHHHHHHHhhhccccccc
Confidence 58999888776555433334443
No 8
>PRK12750 cpxP periplasmic repressor CpxP; Reviewed
Probab=31.40 E-value=62 Score=27.18 Aligned_cols=25 Identities=16% Similarity=0.179 Sum_probs=19.2
Q ss_pred HHHHHHHHHhccCHHHHHHHHhhCC
Q 023045 29 HVAVCRIAQSRLREAAADAVKQLLP 53 (288)
Q Consensus 29 H~~Va~iA~~~L~~~~~~~l~~lL~ 53 (288)
|..-..+..=.||++.+.+|+.|..
T Consensus 42 ~~~~~m~~~L~LTdeQk~qik~i~~ 66 (170)
T PRK12750 42 GMDRGIMRQLDLTDAQKEQLKEMRE 66 (170)
T ss_pred cchhhhHhhCCCCHHHHHHHHHHHH
Confidence 3444556777899999999999874
No 9
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=31.25 E-value=35 Score=25.87 Aligned_cols=12 Identities=17% Similarity=0.075 Sum_probs=7.0
Q ss_pred CCchHHHHHHHHH
Q 023045 1 MGLRAYQILTCVS 13 (288)
Q Consensus 1 ~~~~~~~~~~~~~ 13 (288)
|+ +|.+|++.++
T Consensus 1 Ma-SK~~llL~l~ 12 (95)
T PF07172_consen 1 MA-SKAFLLLGLL 12 (95)
T ss_pred Cc-hhHHHHHHHH
Confidence 88 6655555443
No 10
>COG0158 Fbp Fructose-1,6-bisphosphatase [Carbohydrate transport and metabolism]
Probab=23.66 E-value=40 Score=31.16 Aligned_cols=40 Identities=13% Similarity=0.373 Sum_probs=31.0
Q ss_pred HHHHHHHHHhccCCCCCCCcccccHHHHHHHHHHHHhccCCCCccC
Q 023045 111 GAINNYTTQLLSYNSASSSHSEYNLTEALLFLSHFIGDIHQPLHVG 156 (288)
Q Consensus 111 ~ai~~~~~~L~~~~~~~~~~~~~~~~~aLk~LvHlvGDiHQPLH~~ 156 (288)
.+++.|.+.+......+ -|.+.+||+.-+|+|+|+=|==|
T Consensus 211 ~~v~~yI~~~~~~~~~~------~r~y~~RyigSmVADvHRiL~~G 250 (326)
T COG0158 211 EGVKKYIKDCFAEDKGT------RRPYNMRYIGSMVADVHRILLKG 250 (326)
T ss_pred HHHHHHHHHHhccCCCc------CCCcchhhHHHHHHHHHHHHHcC
Confidence 57888888887654332 27899999999999999988643
No 11
>PF13758 Prefoldin_3: Prefoldin subunit
Probab=23.32 E-value=62 Score=24.76 Aligned_cols=22 Identities=18% Similarity=0.400 Sum_probs=20.4
Q ss_pred HHHhccHHHHHHHHHHHHHHHH
Q 023045 259 EYFNSRLPIVKLRLAQGGVRLA 280 (288)
Q Consensus 259 ~Y~~~~~~v~~~ql~~AG~RLA 280 (288)
+|+.++...+++||..|=-|||
T Consensus 78 DYV~~Ni~tleKql~~aE~kla 99 (99)
T PF13758_consen 78 DYVQQNIETLEKQLEAAENKLA 99 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC
Confidence 8999999999999999988876
No 12
>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H.
Probab=22.84 E-value=88 Score=23.43 Aligned_cols=23 Identities=9% Similarity=0.046 Sum_probs=18.7
Q ss_pred HHHHHHHhccCHHHHHHHHhhCC
Q 023045 31 AVCRIAQSRLREAAADAVKQLLP 53 (288)
Q Consensus 31 ~Va~iA~~~L~~~~~~~l~~lL~ 53 (288)
.........||++.+.++++++.
T Consensus 33 ~~~~~~~l~Lt~eQ~~~l~~~~~ 55 (125)
T PF13801_consen 33 HPMLADMLNLTPEQQAKLRALMD 55 (125)
T ss_dssp HHHHHHHS-TTHHHHHHHHHHHH
T ss_pred chhhhhhcCCCHHHHHHHHHHHH
Confidence 66667778999999999999985
No 13
>PF00882 Zn_dep_PLPC: Zinc dependent phospholipase C; InterPro: IPR001531 Bacillus cereus contains a monomeric phospholipase C 3.1.4.3 from EC (PLC) of 245 amino-acid residues that binds three zinc ions []. Although PLC prefers to act on phosphatidylcholine, it also shows weak catalytic activity with sphingomyelin and phosphatidylinositol []. Sequence studies have shown the PLC protein to be similar to the following: Alpha toxin from Clostridium perfringens and Clostridium bifermentans, which are zinc-dependent phospholipases C involved in haemolysis and cell rupture []. Lecithinase C from Listeria monocytogenes, which aids cell-to-cell spread by breaking down the 2-membrane vacuoles that surround the bacterium during transfer []. Each of these proteins is a zinc-dependent enzyme, binding 3 zinc ions per molecule []. The enzymes catalyse the conversion of phosphatidylcholine and water to 1,2-diacylglycerol and choline phosphate [, , ]. In B. cereus, there are nine residues known to be involved in binding the zinc ions: 5 His, 2 Asp, 1 Glu and 1 Trp. These residues are all conserved in the Clostridium alpha-toxin [].; GO: 0004629 phospholipase C activity, 0008270 zinc ion binding; PDB: 2WXU_A 1QMD_A 2WY6_C 1QM6_B 2WXT_A 1KHO_B 1P6E_A 2HUC_A 1P5X_A 2FFZ_A ....
Probab=21.15 E-value=93 Score=24.81 Aligned_cols=45 Identities=18% Similarity=0.260 Sum_probs=29.6
Q ss_pred ccHHHHHHHHHHHHhccCCCCccCCCCCCCCCceEEeeccccCCchhhhhhhhH
Q 023045 133 YNLTEALLFLSHFIGDIHQPLHVGFTSDRGGNTIDVHWYTRKQVLHHVWDNNII 186 (288)
Q Consensus 133 ~~~~~aLk~LvHlvGDiHQPLH~~~~~D~GGN~~~V~~~g~~~nLH~~WDs~~~ 186 (288)
...++.|-++.|++.|.-. |..+... + ...+....-|...|+.+-
T Consensus 80 ~~~a~~lG~~~H~~~D~~~--H~~~~~~---~----~~~~~~~~~H~~~E~~ld 124 (163)
T PF00882_consen 80 KEAAFLLGYLCHYIADSFC--HPVPANH---N----KIFSGNLLQHRYYETYLD 124 (163)
T ss_dssp HHHHHHHHHHHHHHHHHTS--H---HTT---T----TTTTTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH--hcccccc---c----cccccchHHHHHHHHHHH
Confidence 3678999999999999999 8100000 0 012345677998998755
No 14
>KOG3688 consensus Cyclic GMP phosphodiesterase [Signal transduction mechanisms]
Probab=20.42 E-value=2.3e+02 Score=27.68 Aligned_cols=52 Identities=27% Similarity=0.412 Sum_probs=38.1
Q ss_pred HHHHHHHHHhccCCCCCCCcccccHHHHHHHHHHHHhccCCCCccCCCCCCCCCceEEeeccccCCchhhhhhhhHhHH
Q 023045 111 GAINNYTTQLLSYNSASSSHSEYNLTEALLFLSHFIGDIHQPLHVGFTSDRGGNTIDVHWYTRKQVLHHVWDNNIIETA 189 (288)
Q Consensus 111 ~ai~~~~~~L~~~~~~~~~~~~~~~~~aLk~LvHlvGDiHQPLH~~~~~D~GGN~~~V~~~g~~~nLH~~WDs~~~~~~ 189 (288)
..|+.+...|..... .++.-+|+.|+| .+||-.|- +.-+||.-|--++.+..
T Consensus 337 qqiktmk~~L~~~e~-------iDk~k~lsLllh-~aDIshPa-------------------K~w~lH~rWT~~llEEF 388 (554)
T KOG3688|consen 337 QQIKTMKERLQQPEG-------IDKLKALSLLLH-AADISHPA-------------------KPWGLHHRWTMALLEEF 388 (554)
T ss_pred HHHHHHHHHhhChhh-------hhhHHHHHHHHH-HhccCCCc-------------------ccccHHHHHHHHHHHHH
Confidence 356666666654332 268899999999 67999983 45599999999988654
Done!