Query 023045
Match_columns 288
No_of_seqs 133 out of 527
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 15:25:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023045.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023045hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3sng_A Nuclease; mainly alpha 100.0 9.3E-78 3.2E-82 542.2 19.1 263 24-288 1-266 (277)
2 1ak0_A P1 nuclease; endonuclea 100.0 4.6E-71 1.6E-75 498.2 14.9 254 24-288 1-265 (270)
3 1ah7_A Phospholipase C; phosph 100.0 1.2E-43 4E-48 315.2 6.3 213 25-288 10-240 (245)
4 2wxu_A Phospholipase C; cytoly 96.5 0.0046 1.6E-07 56.8 6.8 219 26-287 8-240 (370)
5 1olp_A Alpha-toxin; zinc phosp 95.9 0.0085 2.9E-07 55.1 5.5 220 26-287 8-240 (370)
6 1y71_A Kinase-associated prote 24.5 14 0.00049 28.4 -0.2 72 147-241 49-120 (130)
7 3lay_A Zinc resistance-associa 21.7 37 0.0013 27.5 1.7 36 17-53 44-81 (175)
8 2kix_A BM2 protein; channel, t 12.8 49 0.0017 18.5 0.2 25 4-29 3-27 (33)
9 2k8j_X P7TM2; P7 polypeptide, 10.4 1.3E+02 0.0045 16.8 1.5 13 11-23 17-29 (29)
10 3k67_A Putative dehydratase AF 9.6 1.1E+02 0.0039 23.8 1.5 18 138-156 52-69 (159)
No 1
>3sng_A Nuclease; mainly alpha helical, trinuclear metal centre, 3'-nucleotidase, nucleic acids, mononucleotid cytosol membrane associated; HET: NAG BMA MAN BTB; 2.16A {Solanum lycopersicum} PDB: 4dj4_A*
Probab=100.00 E-value=9.3e-78 Score=542.25 Aligned_cols=263 Identities=55% Similarity=1.067 Sum_probs=239.4
Q ss_pred cChhhHHHHHHHHHhccCHHHHHHHHhhCCCCCCCccccccccccccCc--cCCCCCCcccccCCCCCCCcccCCCcccc
Q 023045 24 WGNDGHVAVCRIAQSRLREAAADAVKQLLPESADNDLGSVCTWADHVKF--HYHWSSALHFIDTPDNLCTYQYNRDCKDE 101 (288)
Q Consensus 24 Wg~~GH~~Va~iA~~~L~~~~~~~l~~lL~~~~~~~~~~~a~WaD~ir~--~~~~~~~wHyid~p~~~~~~~~~~dc~~~ 101 (288)
||..|||+||+||+++|+|+++++|++||+...+.+|+++|+|||+||+ +++|+++|||+|+|++.|++++.+||++.
T Consensus 1 Wg~~GH~~Va~IA~~~L~~~~~~~v~~lL~~~~~~~l~~~a~WaD~ir~~~~~~~~~~wHyid~p~~~c~~~~~rdc~~~ 80 (277)
T 3sng_A 1 WSKEGHVMTCRIAQGLLNDEAAHAVKMLLPEYVNGDLSALCVWPDQVRHWYKYKWTSPLHFIDTPDKACNFDYERDCHDQ 80 (277)
T ss_dssp CCHHHHHHHHHHHHTTCCHHHHHHHHHHSCGGGTTCGGGTTTHHHHHTTSGGGGGGGGGGCCCBCTTTCCCCHHHHCBCT
T ss_pred CCcHHHHHHHHHHHHHCCHHHHHHHHHHhCcccccCHHHHhhhHhhhcccccccccCcceeecCCCCcCCCcccCCcccc
Confidence 9999999999999999999999999999986667899999999999996 78999999999999999999999999865
Q ss_pred CCCCCCcHHHHHHHHHHHhccCCCCCCCcccccHHHHHHHHHHHHhccCCCCccCCCCCCCCCceEEeeccccCCchhhh
Q 023045 102 DGVKGRCVAGAINNYTTQLLSYNSASSSHSEYNLTEALLFLSHFIGDIHQPLHVGFTSDRGGNTIDVHWYTRKQVLHHVW 181 (288)
Q Consensus 102 ~~~~~~cv~~ai~~~~~~L~~~~~~~~~~~~~~~~~aLk~LvHlvGDiHQPLH~~~~~D~GGN~~~V~~~g~~~nLH~~W 181 (288)
.+++++||++||.+++++|++.+.... .+.+++.+|||||||||||||||||+++.+|+|||+|+|.|+|+++|||+||
T Consensus 81 ~~~~~~cvv~aI~~~t~~L~~~~~~~~-~~~~~~~~aLkfLvHfvGDiHQPLH~g~~~D~GGN~i~V~~~g~~~NLH~vW 159 (277)
T 3sng_A 81 HGVKDMCVAGAIQNFTTQLSHYREGTS-DRRYNMTEALLFLSHFMGDIHQPMHVGFTSDAGGNSIDLRWFRHKSNLHHVW 159 (277)
T ss_dssp TCCBTCSHHHHHHHHHHHHTTTTTCCC-CTTCCHHHHHHHHHHHHHHHHSGGGGCBTTTTTTTTCEEEETTEEEEHHHHH
T ss_pred cCCCcchHHHHHHHHHHHHcCCCCccc-CChHHHHHHHHHHHHHhccccCCccCCCCcCCCCCeEEEEECCccCchHHHH
Confidence 556799999999999999998752100 0145899999999999999999999999999999999999999999999999
Q ss_pred hhhhHhHHHHhccCCCHHHHHHHHHHhhhhh-hHHHHHhHhhccCCCCCChHHHHHHHHHHHHHhccCCCCCCCCCCHHH
Q 023045 182 DNNIIETAEERFYNSNIDGLVDAIQQNITTD-WADLVKKWETCSANNTACPDVYASEGIKAACDWAYKGVSEGSVLEDEY 260 (288)
Q Consensus 182 Ds~~~~~~~~~~~~~~~~~~~~~l~~~i~~~-~~~~~~~w~~~~~~~~~~~~~Wa~Es~~la~~~vY~~~~~~~~ls~~Y 260 (288)
|++|+++..+.++..++.+|++.|.++|+.+ |++++++|..|.+ ...||.+|+.||+++||++||+.++++.+|+++|
T Consensus 160 Ds~ii~~~~~~~~~~~~~~~a~~L~~~i~~~~~~~~~~~w~~~~~-~~~~~~~Wa~ES~~la~~~vY~~~~~~~~L~~~Y 238 (277)
T 3sng_A 160 DREIILTAAKDYYAKDINLLEEDIEGNFTDGIWSDDLASWRECGN-VFSCVNKFATESINIACKWGYKGVEAGETLSDDY 238 (277)
T ss_dssp HTHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTHHHHHCCCS-HHHHHHHHHHHHHHHHHHTTSTTCCTTCEECHHH
T ss_pred HhhhhhhhhccccccCHHHHHHHHHHHhhcccchhHHHHHhhccc-ccCCHHHHHHHHHHHHHHHhccCCCCCCccCHHH
Confidence 9999998877777778899999998888875 8888889987753 5679999999999999999999988888999999
Q ss_pred HhccHHHHHHHHHHHHHHHHHHHHHhhC
Q 023045 261 FNSRLPIVKLRLAQGGVRLAATLNRIFG 288 (288)
Q Consensus 261 ~~~~~~v~~~ql~~AG~RLA~~Ln~i~~ 288 (288)
+.+++|++|+||++||||||.+||+||+
T Consensus 239 ~~~~~~i~e~qla~aG~RLA~~LN~i~~ 266 (277)
T 3sng_A 239 FNSRLPIVMKRVAQGGIRLAMLLNNVFG 266 (277)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999985
No 2
>1ak0_A P1 nuclease; endonuclease, reaction mechanism, thiophosphory oligonucleotides, glycosylated protein; HET: NAG ADS THS; 1.80A {Penicillium citrinum} SCOP: a.124.1.2
Probab=100.00 E-value=4.6e-71 Score=498.16 Aligned_cols=254 Identities=31% Similarity=0.531 Sum_probs=223.9
Q ss_pred cChhhHHHHHHHHHhccCHHHHHHHHhhCCCCCCCccccccccccccCc--cCCCCCCcccccCCC---CCCCcccCCCc
Q 023045 24 WGNDGHVAVCRIAQSRLREAAADAVKQLLPESADNDLGSVCTWADHVKF--HYHWSSALHFIDTPD---NLCTYQYNRDC 98 (288)
Q Consensus 24 Wg~~GH~~Va~iA~~~L~~~~~~~l~~lL~~~~~~~~~~~a~WaD~ir~--~~~~~~~wHyid~p~---~~~~~~~~~dc 98 (288)
||.+|||+||+||+++|+++++++|+++|+.....+|+++|+|||+||+ .++++++|||+|+|. ..|++++.++|
T Consensus 1 Wg~~GH~~va~iA~~~L~~~~~~~v~~lL~~~~~~~l~~~a~WaD~ir~~~~~~~~~~wHyid~~~~p~~~c~~~~~rdc 80 (270)
T 1ak0_A 1 WGALGHATVAYVAQHYVSPEAASWAQGILGSSSSSYLASIASWADEYRLTSAGKWSASLHFIDAEDNPPTNCNVDYERDC 80 (270)
T ss_dssp CCHHHHHHHHHHHHHHSCHHHHHHHHHHHTCCSTTTTGGGTTHHHHHHTSTTTGGGGGGGCCCCCCBTTTBCCCCHHHHS
T ss_pred CCcHHHHHHHHHHHHHCCHHHHHHHHHHhCCCCcccHHHHccchhhcccCCCCCccccccCCCCcCCCCcCCCCcccCCC
Confidence 9999999999999999999999999999986655679999999999997 579999999999965 45899999999
Q ss_pred cccCCCCCCcHHHHHHHHHHHhccCCCCCCCcccccHHHHHHHHHHHHhccCCCCccCCCCCCCCCceEEeeccccCCch
Q 023045 99 KDEDGVKGRCVAGAINNYTTQLLSYNSASSSHSEYNLTEALLFLSHFIGDIHQPLHVGFTSDRGGNTIDVHWYTRKQVLH 178 (288)
Q Consensus 99 ~~~~~~~~~cv~~ai~~~~~~L~~~~~~~~~~~~~~~~~aLk~LvHlvGDiHQPLH~~~~~D~GGN~~~V~~~g~~~nLH 178 (288)
+ +++||+++|++++++|++.+.+ .+++.++||||+|||||||||||++ .+|+|||+|+|+|+|+++|||
T Consensus 81 ~-----~~~cv~~ai~~~~~~L~~~~~s-----~~~~~~aL~fLvH~vGDiHQPLH~~-~~D~GGN~i~V~~~g~~~nLH 149 (270)
T 1ak0_A 81 G-----SSGCSISAIANYTQRVSDSSLS-----SENHAEALRFLVHFIGDMTQPLHDE-AYAVGGNKINVTFDGYHDNLH 149 (270)
T ss_dssp C-----TTCCHHHHHHHHHHHHTCTTSC-----HHHHHHHHHHHHHHHHHTTSGGGGC-CHHHHTTTCEEEETTEEEEHH
T ss_pred C-----CcccHHHHHHHHHHHHccCCCC-----HHHHHHHHHHHHHHcccccCcccCc-CcCCCCCeEEEEECCccCccH
Confidence 5 4899999999999999987654 4589999999999999999999998 689999999999999999999
Q ss_pred hhhhhhhHhHHHHhccCCCHHHHHHHHHHhhhhh-hHHHHHhHhhccC--CCCCChHHHHHHHHHHHHHhccCCC---CC
Q 023045 179 HVWDNNIIETAEERFYNSNIDGLVDAIQQNITTD-WADLVKKWETCSA--NNTACPDVYASEGIKAACDWAYKGV---SE 252 (288)
Q Consensus 179 ~~WDs~~~~~~~~~~~~~~~~~~~~~l~~~i~~~-~~~~~~~w~~~~~--~~~~~~~~Wa~Es~~la~~~vY~~~---~~ 252 (288)
+|||++|+++..+.++..+..+|++.|.+.++.+ |+++.+.|.+|.. ....||.+|+.||++++|++||+.. .+
T Consensus 150 ~vWDs~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~wa~ES~~la~~~vY~~~~~~~~ 229 (270)
T 1ak0_A 150 SDWDTYMPQKLIGGHALSDAESWAKTLVQNIESGNYTAQAIGWIKGDNISEPITTATRWASDANALVCTVVMPHGAAALQ 229 (270)
T ss_dssp HHHHTHHHHHHHSCCSHHHHHHHHHHHHHHHHHSTTHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHHHHTTSTTCSGGGS
T ss_pred HHHhccchhhhccccCcchHHHHHHHHHHhcccCCCchhHHHhhcCccccccccCHHHHHHHHHHHHHHHhcccCccccc
Confidence 9999999988655443335567888888777766 8888999987632 2346899999999999999999753 35
Q ss_pred CCCCCHHHHhccHHHHHHHHHHHHHHHHHHHHHhhC
Q 023045 253 GSVLEDEYFNSRLPIVKLRLAQGGVRLAATLNRIFG 288 (288)
Q Consensus 253 ~~~ls~~Y~~~~~~v~~~ql~~AG~RLA~~Ln~i~~ 288 (288)
+.+|+++|+.+++|++++||++||+|||.+||+||+
T Consensus 230 ~~~l~~~Y~~~~~~v~e~qla~aG~RLA~~Ln~i~~ 265 (270)
T 1ak0_A 230 TGDLYPTYYDSVIDTIELQIAKGGYRLANWINEIHG 265 (270)
T ss_dssp SSBCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 678999999999999999999999999999999985
No 3
>1ah7_A Phospholipase C; phospholipid hydrolysis, hydrolase; 1.50A {Bacillus cereus} SCOP: a.124.1.1 PDB: 2ffz_A 1p5x_A 1p6d_A* 1p6e_A* 2fgn_A 2huc_A
Probab=100.00 E-value=1.2e-43 Score=315.20 Aligned_cols=213 Identities=18% Similarity=0.231 Sum_probs=163.0
Q ss_pred ChhhHHHHHHHHHhccCHHHHHHHHh---hCCCCCCCccccccccccccCcc-C-CCCCCcccccCCCCCCCcccCCCcc
Q 023045 25 GNDGHVAVCRIAQSRLREAAADAVKQ---LLPESADNDLGSVCTWADHVKFH-Y-HWSSALHFIDTPDNLCTYQYNRDCK 99 (288)
Q Consensus 25 g~~GH~~Va~iA~~~L~~~~~~~l~~---lL~~~~~~~~~~~a~WaD~ir~~-~-~~~~~wHyid~p~~~~~~~~~~dc~ 99 (288)
|..||+.|+++|.+.|+.+....+++ .++.. .+.+...|+|||+ |.. + +++.+|||+|+|.+ |++.+.++|.
T Consensus 10 ~~~tH~~I~~~A~~~L~~~~~~~~~~~~~~~~~w-~D~i~~~~~w~D~-k~~~~~~~~~~~Hy~d~~~~-~~~~~~~~~~ 86 (245)
T 1ah7_A 10 GVNSHLWIVNRAIDIMSRNTTLVKQDRVAQLNEW-RTELENGIYAADY-ENPYYDNSTFASHFYDPDNG-KTYIPFAKQA 86 (245)
T ss_dssp GGCHHHHHHHHHHHHHHHCCSSCCHHHHHHHHHT-HHHHHHHHHHTTT-STTTTTTTTCGGGCCBTTTT-BCSSTTCCCH
T ss_pred CCcHHHHHHHHHHHHhccccchHHHHHHHHHHhC-HHHHHhcCcCCCc-ccccccccCCCcccccCCCC-CCCCCCCCCc
Confidence 67899999999999997764221221 12211 3467777889999 753 3 78999999999975 8988889995
Q ss_pred ccCCCCCCcHHHHHHHHHHHhccCCCCCCCcccccHHHHHHHHHHHHhccCCCCccCCCCCCCCCceEEeeccccCCchh
Q 023045 100 DEDGVKGRCVAGAINNYTTQLLSYNSASSSHSEYNLTEALLFLSHFIGDIHQPLHVGFTSDRGGNTIDVHWYTRKQVLHH 179 (288)
Q Consensus 100 ~~~~~~~~cv~~ai~~~~~~L~~~~~~~~~~~~~~~~~aLk~LvHlvGDiHQPLH~~~~~D~GGN~~~V~~~g~~~nLH~ 179 (288)
.+|++.+|.++++.+++.+ ..++.++|+||+||||||||||| |||.+. +|+.+|||+
T Consensus 87 ------~~~~~~~~~~~~~~l~~~~-------~~~~~~aL~~l~H~vGDiHQPlH-------~gn~~~---~~~~~nlH~ 143 (245)
T 1ah7_A 87 ------KETGAKYFKLAGESYKNKD-------MKQAFFYLGLSLHYLGDVNQPMH-------AANFTN---LSYPQGFHS 143 (245)
T ss_dssp ------HHHHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHHHHHHTSTTT-------TTTCCT---TSSSTTHHH
T ss_pred ------chHHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHHHHhcCCCCC-------CCcccc---CCCCCCchH
Confidence 3399999999999998854 23789999999999999999999 678876 578899999
Q ss_pred hhhhhhHhHHHHhccCCCHHHHHHHHHHhhhhhhHHHHHhHhhccCCCCCChHHHHHHHHHHHHHhccCCCCCCCCCCHH
Q 023045 180 VWDNNIIETAEERFYNSNIDGLVDAIQQNITTDWADLVKKWETCSANNTACPDVYASEGIKAACDWAYKGVSEGSVLEDE 259 (288)
Q Consensus 180 ~WDs~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~w~~~~~~~~~~~~~Wa~Es~~la~~~vY~~~~~~~~ls~~ 259 (288)
+|| .+++..... +.. ... .+...| ...||.+|+.||+++ |+.+|+.+..+.. +.+
T Consensus 144 ~WD-~~i~~~~~~-y~~------------~~~---~~~~~~------~~~~~~~W~~Es~~~-a~~~Y~~~~~~~~-~~~ 198 (245)
T 1ah7_A 144 KYE-NFVDTIKDN-YKV------------TDG---NGYWNW------KGTNPEEWIHGAAVV-AKQDYSGIVNDNT-KDW 198 (245)
T ss_dssp HHH-HHHHHHGGG-GCC------------CSS---CCCTTC------SCSCHHHHHHHHHHH-HHHTGGGTSSHHH-HHH
T ss_pred HHH-HHHHHHhhc-ccc------------cch---HHHHHH------hcCCHHHHHHHHHHH-HHHHhccccCCCc-ccc
Confidence 999 788763222 211 000 112223 236999999999999 6679987655544 666
Q ss_pred HHh---------c----cHHHHHHHHHHHHHHHHHHHHHhhC
Q 023045 260 YFN---------S----RLPIVKLRLAQGGVRLAATLNRIFG 288 (288)
Q Consensus 260 Y~~---------~----~~~v~~~ql~~AG~RLA~~Ln~i~~ 288 (288)
|+. + ++|++++||++||+|||.+||.||+
T Consensus 199 Y~~~~~~~~~~~~~~~~~~~v~~~qL~~aG~RLA~~Ln~i~~ 240 (245)
T 1ah7_A 199 FVKAAVSQEYADKWRAEVTPMTGKRLMDAQRVTAGYIQLWFD 240 (245)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 773 5 9999999999999999999999984
No 4
>2wxu_A Phospholipase C; cytolysis, hydrolase, hemolysis, membrane binding, virulence gangrene determinant, C2 domain; 1.80A {Clostridium perfringens} PDB: 2wy6_A 2wxt_A 1qm6_A 1qmd_A 1ca1_A 1gyg_A 1kho_A
Probab=96.48 E-value=0.0046 Score=56.84 Aligned_cols=219 Identities=18% Similarity=0.140 Sum_probs=105.1
Q ss_pred hhhHHHHHHHHHhccCHHH-------HHHHHhhCCCCCCCccccccccccccCccCCCCCCcccccCCCCCCCcccCCCc
Q 023045 26 NDGHVAVCRIAQSRLREAA-------ADAVKQLLPESADNDLGSVCTWADHVKFHYHWSSALHFIDTPDNLCTYQYNRDC 98 (288)
Q Consensus 26 ~~GH~~Va~iA~~~L~~~~-------~~~l~~lL~~~~~~~~~~~a~WaD~ir~~~~~~~~wHyid~p~~~~~~~~~~dc 98 (288)
..-|..|+.=|.+.|..+. .+.-.++|... ...|-.-++|||.=...+. .-.-||.|...+ .++......
T Consensus 8 ~~TH~~I~~qAl~iL~nd~~~~~~~~~k~~~~~L~~y-~~~l~~Gs~~pD~d~k~~~-~f~~Hfydp~~~-~~~~~~~~w 84 (370)
T 2wxu_A 8 TGTHAMIVTQGVSILENDLSKNEPESVRKNLEILKEN-MHELQLGSTYPDYDKNAYD-LYQDHFWDPDID-NNFSKDNSW 84 (370)
T ss_dssp BSHHHHHHHHHHHHHHHHCCTTSCHHHHHHHHHHHHT-HHHHHHHHHGGGTCTTCCT-TCGGGCCCTTC----------C
T ss_pred CchHHHHHHHHHHHHhhcCccchhHHHHHHHHHHHHH-HHHHHcCCcccccCCcccc-ccccccccCCCC-CCccccccc
Confidence 4569999998888884322 22222333211 2367788999998333221 223488876443 222111000
Q ss_pred cccCCCCCCcHHHHHHHHHHHhccCCCCCCCcccccHHHHHHHHHHHHhccCCCCccC--CCCCCCCCceEEeeccccCC
Q 023045 99 KDEDGVKGRCVAGAINNYTTQLLSYNSASSSHSEYNLTEALLFLSHFIGDIHQPLHVG--FTSDRGGNTIDVHWYTRKQV 176 (288)
Q Consensus 99 ~~~~~~~~~cv~~ai~~~~~~L~~~~~~~~~~~~~~~~~aLk~LvHlvGDiHQPLH~~--~~~D~GGN~~~V~~~g~~~n 176 (288)
--.. .-.....+....+...-.+.-.... ...-.+.|-..+|+|+|+.||+|+. ..-|.+
T Consensus 85 ~~~~-~~~~tA~~~~~ky~~~A~~~~~~g~---~~~A~~~LG~a~Hy~~D~~~P~Ha~n~t~~~~~-------------- 146 (370)
T 2wxu_A 85 YLAY-SIPDTGESQIRKFSALARYEWQRGN---YKQATFYLGEAMHYFGDIDTPYHPANVTAVDSA-------------- 146 (370)
T ss_dssp TTTB-CBCCCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHHTSSTTTTTCCTTTCT--------------
T ss_pred cccc-CCCCcHHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHhhcCCCCcccccccccCCc--------------
Confidence 0000 0011233444444443222111110 1134588999999999999999994 111111
Q ss_pred chhhhhhhhHhHHHHhccCCCHHHHHHHHHHhhhhh-hHHHHHhHhhccCCCCCChHHHHHHHHHH----HHHhccCCCC
Q 023045 177 LHHVWDNNIIETAEERFYNSNIDGLVDAIQQNITTD-WADLVKKWETCSANNTACPDVYASEGIKA----ACDWAYKGVS 251 (288)
Q Consensus 177 LH~~WDs~~~~~~~~~~~~~~~~~~~~~l~~~i~~~-~~~~~~~w~~~~~~~~~~~~~Wa~Es~~l----a~~~vY~~~~ 251 (288)
-|.-.++-+.... ..+ .-+.... ..... |.+ .+ ...++.+|..|.... |.+..|+...
T Consensus 147 gH~~fE~~V~~~~-~~y-~~~t~g~------~~~~~~y~~---~~------~~~~~~~Wv~e~ak~~Ak~a~~~Y~~~~~ 209 (370)
T 2wxu_A 147 GHVKFETFAEERK-EQY-KINTAGC------KTNEAFYTD---IL------KNKDFNAWSKEYARGFAKTGKSIYYSHAS 209 (370)
T ss_dssp HHHHHHHHHHHHG-GGG-CCSCCSS------CTTSHHHHH---HH------HCSCHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHHHhh-hhe-eeccCCc------ccccceeec---cc------ccCCHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 1887777644321 111 1000000 00000 000 01 125788999988774 5542233221
Q ss_pred CCCCCCHHHHhccHHHHHHHHHHHHHHHHHHHHHhh
Q 023045 252 EGSVLEDEYFNSRLPIVKLRLAQGGVRLAATLNRIF 287 (288)
Q Consensus 252 ~~~~ls~~Y~~~~~~v~~~ql~~AG~RLA~~Ln~i~ 287 (288)
......+| ..+++.+|..|=..+|..|-..|
T Consensus 210 -~~~~~~~~----~~~a~~~L~~AQ~~TAGfl~~f~ 240 (370)
T 2wxu_A 210 -MSHSWDDW----DYAAKVTLANSQKGTAGYIYRFL 240 (370)
T ss_dssp -TTSCHHHH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -ccCcHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 22233455 56666777777777777775543
No 5
>1olp_A Alpha-toxin; zinc phospholipase C, GAS gangrene determinant, membrane binding, calcium binding, hydrolase; 2.5A {Clostridium absonum} SCOP: a.124.1.1 b.12.1.3
Probab=95.92 E-value=0.0085 Score=55.10 Aligned_cols=220 Identities=14% Similarity=0.088 Sum_probs=107.2
Q ss_pred hhhHHHHHHHHHhccCHHH-------HHHHHhhCCCCCCCccccccccccccCccCCCCCCcccccCCCCCCCcccCCCc
Q 023045 26 NDGHVAVCRIAQSRLREAA-------ADAVKQLLPESADNDLGSVCTWADHVKFHYHWSSALHFIDTPDNLCTYQYNRDC 98 (288)
Q Consensus 26 ~~GH~~Va~iA~~~L~~~~-------~~~l~~lL~~~~~~~~~~~a~WaD~ir~~~~~~~~wHyid~p~~~~~~~~~~dc 98 (288)
..-|..|+.=|.+.|..+. .+.-.++|... ...|-.-++|||.=...+. .-.-||.|...+ .++......
T Consensus 8 ~~TH~~I~~qAl~iL~nd~~~~~~~~~k~~~~~L~~y-~~~l~~Gs~~pD~d~k~~~-~f~~Hfydp~~~-~~~~~~~~w 84 (370)
T 1olp_A 8 TGTHSVIVTQAIEMLKHDLSKDEPEAIRNDLSILEKN-LHKFQLGSTFPDYDPNAYS-LYQDHFWDPDTD-HNFTQDNKW 84 (370)
T ss_dssp BSHHHHHHHHHHHHHHHHCCTTSCHHHHHHHHHHHHT-HHHHHHHHHGGGGCTTCCT-TCGGGCCBTTTT-BCHHHHSGG
T ss_pred CchHHHHHHHHHHHHhhcCccchhhHHHHHHHHHHHH-HHHHHcCCcccccCCcccc-ccccccccCCCC-CCccccccc
Confidence 4569999999999994322 23333333321 2457788999998333221 223488876443 222111000
Q ss_pred cccCCCCCCcHHHHHHHHHHHhccCCCCCCCcccccHHHHHHHHHHHHhccCCCCccC--CCCCCCCCceEEeeccccCC
Q 023045 99 KDEDGVKGRCVAGAINNYTTQLLSYNSASSSHSEYNLTEALLFLSHFIGDIHQPLHVG--FTSDRGGNTIDVHWYTRKQV 176 (288)
Q Consensus 99 ~~~~~~~~~cv~~ai~~~~~~L~~~~~~~~~~~~~~~~~aLk~LvHlvGDiHQPLH~~--~~~D~GGN~~~V~~~g~~~n 176 (288)
--.. .-.....+....+...-.+.-.... ...-.+.|-..+|+|+|+.||+|+. ..-|.+
T Consensus 85 ~~~~-~~~~tA~~~~~ky~~~A~~~~~~g~---~~~A~~~LG~a~Hy~~D~~~P~Ha~n~t~~~~~-------------- 146 (370)
T 1olp_A 85 YLSY-AVPDNAESQTRKFATLAKNEWDKGN---YEKAAWYLGQGMHYFGDLNTPYHAANVTAVDSP-------------- 146 (370)
T ss_dssp GGGG-CCSCCHHHHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHHHHTSHHHHTTCCTTTCH--------------
T ss_pred cccc-CCCCcHHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHhhcCCCCcccccccccCCc--------------
Confidence 0000 0011233333444443222111110 1134588999999999999999994 111111
Q ss_pred chhhhhhhhHhHHHHhccCCCHHHHHHHHHHhhhhhhHHHHHhHhhccCCCCCChHHHHHHHHHH----HHHhccCCCCC
Q 023045 177 LHHVWDNNIIETAEERFYNSNIDGLVDAIQQNITTDWADLVKKWETCSANNTACPDVYASEGIKA----ACDWAYKGVSE 252 (288)
Q Consensus 177 LH~~WDs~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~w~~~~~~~~~~~~~Wa~Es~~l----a~~~vY~~~~~ 252 (288)
-|.-.++-+.... ..+ .-. +.++.....-+.. .....+|.+|..|.... |.+.-|+...
T Consensus 147 gH~~yE~~V~~~~-~~y-~i~------------t~g~~~~~~~y~~--~~~~~~~~~Wi~e~a~~~Ak~a~~~Y~~~~~- 209 (370)
T 1olp_A 147 GHVKFETYAEERK-DTY-RLD------------TTGYNTDDAFYKD--TLKNDNFNEWSKGYCKYWAKKAKNLYYSHAT- 209 (370)
T ss_dssp HHHHHHHHHHHHG-GGG-CCS------------CCSSCTTSHHHHG--GGSCSCHHHHHHHHHHHHHHHHHHHHHHHCS-
T ss_pred CHHHHHHHHHHhh-hhe-eec------------cCCcccccceeec--ccccCCHHHHHHHHHHHHHHHHHHHHHhccc-
Confidence 1777777544321 111 100 0000000000000 01236889999987774 4432222111
Q ss_pred CCCCCHHHHhccHHHHHHHHHHHHHHHHHHHHHhh
Q 023045 253 GSVLEDEYFNSRLPIVKLRLAQGGVRLAATLNRIF 287 (288)
Q Consensus 253 ~~~ls~~Y~~~~~~v~~~ql~~AG~RLA~~Ln~i~ 287 (288)
......+| ..+++.+|..|=..+|..|-..|
T Consensus 210 ~~~~~~~~----~~~a~~~L~~AQ~~TAGfl~~f~ 240 (370)
T 1olp_A 210 MSNSWDDW----EYAASHGVGNAQKGVAGYLYRFL 240 (370)
T ss_dssp TTSCHHHH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCcHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 11223444 57777888888888888876543
No 6
>1y71_A Kinase-associated protein B; structural genomics, midwest CE structural genomics, MCSG, protein structure initiative, PS unknown function; 1.95A {Bacillus cereus} SCOP: b.34.16.1
Probab=24.51 E-value=14 Score=28.35 Aligned_cols=72 Identities=17% Similarity=0.354 Sum_probs=25.2
Q ss_pred hccCCCCccCCCCCCCCCceEEeeccccCCchhhhhhhhHhHHHHhccCCCHHHHHHHHHHhhhhhhHHHHHhHhhccCC
Q 023045 147 GDIHQPLHVGFTSDRGGNTIDVHWYTRKQVLHHVWDNNIIETAEERFYNSNIDGLVDAIQQNITTDWADLVKKWETCSAN 226 (288)
Q Consensus 147 GDiHQPLH~~~~~D~GGN~~~V~~~g~~~nLH~~WDs~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~w~~~~~~ 226 (288)
||+|.|=-+ .|.|+....-|...=-..++...++. |..+...|.+.|...+.. +..+
T Consensus 49 GDLHnP~q~-----------dvpfFHERkALs~~Ek~~ip~~~vk~-yegeipdY~~SLq~Al~~----~~~~------- 105 (130)
T 1y71_A 49 GDLHNVKQA-----------NVPFFHERRALAFREQTNIPEQMVKK-YEGEIPDYTESLKLALET----QMNS------- 105 (130)
T ss_dssp --------------------------CCCCCCTTCEEEEEGGGEEE-CCSCCCCHHHHHHHHHHH----HHHT-------
T ss_pred cCCCCCCcC-----------CCcceeehhhccHHHHhcCCHHhccc-cCCCCCCHHHHHHHHHHH----HHHH-------
Confidence 788888433 24454444333332222222232222 333444566666554442 2222
Q ss_pred CCCChHHHHHHHHHH
Q 023045 227 NTACPDVYASEGIKA 241 (288)
Q Consensus 227 ~~~~~~~Wa~Es~~l 241 (288)
....-..||+-|.+.
T Consensus 106 L~~~~s~~A~~sL~~ 120 (130)
T 1y71_A 106 FSEDDSPFAERSLET 120 (130)
T ss_dssp TTTCCSHHHHHHHHH
T ss_pred HhccCcHHHHHHHHH
Confidence 123446899887764
No 7
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=21.67 E-value=37 Score=27.50 Aligned_cols=36 Identities=6% Similarity=-0.011 Sum_probs=13.1
Q ss_pred hcccccccCh--hhHHHHHHHHHhccCHHHHHHHHhhCC
Q 023045 17 LFPVIHCWGN--DGHVAVCRIAQSRLREAAADAVKQLLP 53 (288)
Q Consensus 17 ~~~~a~AWg~--~GH~~Va~iA~~~L~~~~~~~l~~lL~ 53 (288)
.+++|+|.|. .|+- +..=.+..||++.++++++|..
T Consensus 44 ~s~~A~A~g~~~~g~g-m~~q~~LnLT~EQq~ql~~I~~ 81 (175)
T 3lay_A 44 SSGAAFAGHHWGNNDG-MWQQGGSPLTTEQQATAQKIYD 81 (175)
T ss_dssp -------------------------CCHHHHHHHHHHHH
T ss_pred HhHHHHhcCCCCCCCC-ccccccccCCHHHHHHHHHHHH
Confidence 3456777533 2221 1122346899999999999975
No 8
>2kix_A BM2 protein; channel, transport protein; NMR {Influenza b virus}
Probab=12.80 E-value=49 Score=18.46 Aligned_cols=25 Identities=32% Similarity=0.539 Sum_probs=17.5
Q ss_pred hHHHHHHHHHHHhhcccccccChhhH
Q 023045 4 RAYQILTCVSFFVLFPVIHCWGNDGH 29 (288)
Q Consensus 4 ~~~~~~~~~~l~~~~~~a~AWg~~GH 29 (288)
...||+.+++++++.---.||. .||
T Consensus 3 ep~qilsi~sfilsalhf~awt-igh 27 (33)
T 2kix_A 3 EPFQILSISSFILSALHFIAWT-IGH 27 (33)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHH-HHH
T ss_pred chhHHHHHHHHHHHHHHHHHHH-HHH
Confidence 3468888888887776667773 455
No 9
>2k8j_X P7TM2; P7 polypeptide, HCV, ION chaneling, transmembrane, viral Pro; NMR {Synthetic}
Probab=10.43 E-value=1.3e+02 Score=16.75 Aligned_cols=13 Identities=15% Similarity=0.145 Sum_probs=7.2
Q ss_pred HHHHHhhcccccc
Q 023045 11 CVSFFVLFPVIHC 23 (288)
Q Consensus 11 ~~~l~~~~~~a~A 23 (288)
++++++++..++|
T Consensus 17 lLllLaLP~rAyA 29 (29)
T 2k8j_X 17 LLLLLALPPRAYA 29 (29)
T ss_dssp HHHHHTCCCTTCC
T ss_pred HHHHHhCchhccC
Confidence 3445566666654
No 10
>3k67_A Putative dehydratase AF1124; hypothetical protein AF1124, structural genomics, PSI, protein structure initiative; 1.25A {Archaeoglobus fulgidus} PDB: 2b3m_A
Probab=9.64 E-value=1.1e+02 Score=23.82 Aligned_cols=18 Identities=22% Similarity=0.506 Sum_probs=14.6
Q ss_pred HHHHHHHHHhccCCCCccC
Q 023045 138 ALLFLSHFIGDIHQPLHVG 156 (288)
Q Consensus 138 aLk~LvHlvGDiHQPLH~~ 156 (288)
-+..+..+.|| ++|+|+.
T Consensus 52 di~~FA~~sGD-~nPiH~D 69 (159)
T 3k67_A 52 DVAMFGLISGD-LNPVHFD 69 (159)
T ss_dssp HHHHHHHHHCC-CCGGGTC
T ss_pred HHHHHHHHHCC-CCccccC
Confidence 35667889999 7899985
Done!