Query 023046
Match_columns 288
No_of_seqs 138 out of 347
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 15:26:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023046.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023046hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dgl_A Casein kinase II subuni 100.0 6.7E-95 2.3E-99 651.3 13.6 193 95-287 2-194 (215)
2 1qf8_A Casein kinase II; casei 100.0 1.1E-87 3.9E-92 592.1 11.5 179 96-274 3-181 (182)
3 4esj_A Type-2 restriction enzy 70.4 0.89 3E-05 41.8 0.0 60 199-265 34-105 (257)
4 2kxe_A DNA polymerase II small 59.1 4.9 0.00017 30.5 2.1 29 172-200 8-36 (75)
5 2con_A RUH-035 protein, NIN on 33.1 13 0.00044 28.5 0.8 13 223-235 26-38 (79)
6 3vk8_A Probable formamidopyrim 31.5 29 0.001 31.8 3.1 14 223-236 275-288 (295)
7 3m7n_A Putative uncharacterize 27.4 30 0.001 29.2 2.3 31 195-237 136-166 (179)
8 2jmo_A Parkin; IBR, E3 ligase, 26.5 51 0.0017 24.3 3.2 36 201-239 27-70 (80)
9 3u5n_A E3 ubiquitin-protein li 25.3 36 0.0012 29.1 2.4 34 201-239 24-57 (207)
10 2lbm_A Transcriptional regulat 23.6 10 0.00036 31.7 -1.3 33 201-234 80-115 (142)
11 2jny_A Uncharacterized BCR; st 22.8 43 0.0015 24.6 2.1 13 226-238 27-39 (67)
12 3o36_A Transcription intermedi 22.5 45 0.0015 27.8 2.5 34 201-239 21-54 (184)
13 1f62_A Transcription factor WS 22.5 27 0.00091 23.3 0.8 21 212-235 29-49 (51)
14 1vk6_A NADH pyrophosphatase; 1 22.2 81 0.0028 28.1 4.2 34 198-241 106-139 (269)
15 1mm2_A MI2-beta; PHD, zinc fin 21.2 65 0.0022 22.6 2.7 30 201-235 26-55 (61)
16 1fp0_A KAP-1 corepressor; PHD 21.0 52 0.0018 25.4 2.3 30 201-235 42-71 (88)
No 1
>4dgl_A Casein kinase II subunit beta; protein kinase, transferase; 3.00A {Homo sapiens} PDB: 2r6m_A 1jwh_C 1ds5_E*
Probab=100.00 E-value=6.7e-95 Score=651.34 Aligned_cols=193 Identities=58% Similarity=1.125 Sum_probs=175.3
Q ss_pred CCCCCCChHHHHhCCCCCeeEEecCcccccCCCccCCCCCCCCCHHHHHHHHcCCCCCCCCCCChhhHHHHHHHHHHHhc
Q 023046 95 SDGDDTSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYG 174 (288)
Q Consensus 95 s~~e~~sWI~wFcsl~gneff~eVdedyI~D~FNL~GL~~~Vp~y~~AL~~ILd~e~~~~~~~~~~~~~~ie~~A~~LYG 174 (288)
|++++.+||+|||+++|||||||||+|||+|+|||+||+++||+|++||+||||.+++++++.++++.+.|+++|++|||
T Consensus 2 s~s~~~sWI~wFc~~~gneffceVd~dyI~D~FNL~GL~~~Vp~y~~aLd~Ild~~~~~~~~~~~~~~~~ie~~A~~LYG 81 (215)
T 4dgl_A 2 SSSEEVSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEELEDNPNQSDLIEQAAEMLYG 81 (215)
T ss_dssp ------CHHHHHHTSTTCTTCCCCCHHHHHSTTTTTTGGGTSSSHHHHHHHHTTC--------CTTHHHHHHHHHHHHHH
T ss_pred CCcccCcHHHHHhCCCCCeEEEEeCHHHhcCcccccCchhccccHHHHHHHHcCCCCcchhcccchhHHHHHHHHHHHhh
Confidence 34457799999999999999999999999999999999999999999999999998765444445567889999999999
Q ss_pred ccccccccChHHHHHHHHHhhcCccCCCCcccCCCCCccccccCCCCCCccceeecCCCCccccCCCCCCCcccccccCC
Q 023046 175 LIHVRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGT 254 (288)
Q Consensus 175 LIHARYIlT~~GL~~M~eKY~~g~FG~CPRv~C~gq~lLPiGlSD~pg~stVKlYCP~C~DVY~P~s~~~~~IDGAyFGt 254 (288)
|||||||+|++||++|++||++|+||+||||+|++|+|||||+||+||+++||||||+|+|||+|+++++.+||||||||
T Consensus 82 LIHARYIlT~~Gl~~M~eKY~~g~FG~CPRv~C~~q~~LPvGlSD~pg~~~VKlyCP~C~DvY~P~s~r~~~iDGAyFGt 161 (215)
T 4dgl_A 82 LIHARYILTNRGIAQMLEKYQQGDFGYCPRVYCENQPMLPIGLSDIPGEAMVKLYCPKCMDVYTPKSSRHHHTDGAYFGT 161 (215)
T ss_dssp HHHHHHTTSHHHHHHHHHHHHTTTTCBCCBGGGTSCBCEEEESCSSTTSCBEEEECTTTCCEECCSSTTSTTSBGGGTTT
T ss_pred hhhHhheecHHHHHHHHHHHhcCCCCcCCccccCCCceeccccCCCCCccceeEeCCCcccccCCCcccccccccceecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHhCCCCCCCCCCCcceeEeeeeecC
Q 023046 255 TFPHLFLMTYGHLKPQKATQSYVPRVFGFKLHK 287 (288)
Q Consensus 255 sFpH~Fl~~yP~l~P~~~~~~YvPrIFGFKIh~ 287 (288)
||||||||+||++.|+++.++|+|||||||||+
T Consensus 162 sFph~f~~~~p~l~p~~~~~~yvPrifGFkih~ 194 (215)
T 4dgl_A 162 GFPHMLFMVHPEYRPKRPANQFVPRLYGFKIHP 194 (215)
T ss_dssp THHHHHHHHCGGGCCCSCSCCCCCEETTEEECT
T ss_pred cchHHHHHHcccccCCCCCCcccCeEeEEEecH
Confidence 999999999999999999999999999999996
No 2
>1qf8_A Casein kinase II; casein kinase beta subunit (1-182), Ser/Thr protein kinase, Zn finger, transferase; HET: MSE; 1.74A {Homo sapiens} SCOP: g.41.4.1 PDB: 3eed_A 1rqf_A
Probab=100.00 E-value=1.1e-87 Score=592.06 Aligned_cols=179 Identities=58% Similarity=1.111 Sum_probs=162.6
Q ss_pred CCCCCChHHHHhCCCCCeeEEecCcccccCCCccCCCCCCCCCHHHHHHHHcCCCCCCCCCCChhhHHHHHHHHHHHhcc
Q 023046 96 DGDDTSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGL 175 (288)
Q Consensus 96 ~~e~~sWI~wFcsl~gneff~eVdedyI~D~FNL~GL~~~Vp~y~~AL~~ILd~e~~~~~~~~~~~~~~ie~~A~~LYGL 175 (288)
++++.+||+|||+++|||||||||+|||+|+|||+||+++||+|++||+||||.+..++++.++++.+.++++|++||||
T Consensus 3 ~~~~~sWI~wF~~~~gneffceVd~dyI~D~FNL~GL~~~vp~y~~aLd~Ild~~~~~~~~~~~~~~~~ie~~a~~LYGL 82 (182)
T 1qf8_A 3 SSEEVSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEELEDNPNQSDLIEQAAEMLYGL 82 (182)
T ss_dssp ----CCHHHHHHHSTTCTTCCCCCHHHHHSGGGGTTGGGTSTTHHHHHHHHTTCCCC------CHHHHHHHHHHHHHHHH
T ss_pred CCccCcHHHHHhCCCCCeEEEEeCHHHhcCcchhhCccccccCHHHHHHHHhCCCCccccccchhhhHHHHHHHHHHhch
Confidence 44577899999999999999999999999999999999999999999999999987655445555678999999999999
Q ss_pred cccccccChHHHHHHHHHhhcCccCCCCcccCCCCCccccccCCCCCCccceeecCCCCccccCCCCCCCcccccccCCc
Q 023046 176 IHVRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTT 255 (288)
Q Consensus 176 IHARYIlT~~GL~~M~eKY~~g~FG~CPRv~C~gq~lLPiGlSD~pg~stVKlYCP~C~DVY~P~s~~~~~IDGAyFGts 255 (288)
||||||+|++||++|++||++|+||+||||+|++|+|||||+||+||+++||||||+|+|||+|++.++.+|||||||||
T Consensus 83 IHaRyIlT~~Gl~~M~eKy~~g~FG~CPRv~C~~q~~LPvGlSd~pg~~~VKlyCP~C~DvY~p~s~~~~~iDGAyFGts 162 (182)
T 1qf8_A 83 IHARYILTNRGIAQMLEKYQQGDFGYCPRVYCENQPMLPIGLSDIPGEAMVKLYCPKCMDVYTPKSSRHHHTDGAYFGTG 162 (182)
T ss_dssp HHHHHTTSHHHHHHHHHHHHTTTTCBCCBGGGTTCBCEEECSCSSTTSCBCEEECTTTCCEECCSSGGGTTSBGGGTCSS
T ss_pred hhhhhcccHHHHHHHHHhhhcCcCCCCCccccCCCcccCCccCCCCCCCceEEECCCccceeCCCcccccccccceecCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999889999999999
Q ss_pred hhHHHHHHhCCCCCCCCCC
Q 023046 256 FPHLFLMTYGHLKPQKATQ 274 (288)
Q Consensus 256 FpH~Fl~~yP~l~P~~~~~ 274 (288)
|||||||+||++.|+++.+
T Consensus 163 Fph~f~~~~p~l~p~~~~~ 181 (182)
T 1qf8_A 163 FPHMLFMVHPEYRPKRPAN 181 (182)
T ss_dssp HHHHHHHHCGGGSCSCC--
T ss_pred hHHHHHHHcccccCCCCCC
Confidence 9999999999999987654
No 3
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=70.45 E-value=0.89 Score=41.85 Aligned_cols=60 Identities=30% Similarity=0.626 Sum_probs=37.2
Q ss_pred cCCCCcccCCCCCccccccCCCCCCccce-eecCCCCccccCCCCC----CCcccccccC-------CchhHHHHHHhC
Q 023046 199 FGRCPRVYCCGQPCLPVGQSDIPRSSTVK-IYCPKCEDIYYPRSKY----QGNIDGAYFG-------TTFPHLFLMTYG 265 (288)
Q Consensus 199 FG~CPRv~C~gq~lLPiGlSD~pg~stVK-lYCP~C~DVY~P~s~~----~~~IDGAyFG-------tsFpH~Fl~~yP 265 (288)
-+.||+ |..-++- .-+...+|. .|||.|.+-|.-+|.. ....||||-- .+=|.+|||+|.
T Consensus 34 n~yCPn--CG~~~l~-----~f~nN~PVaDF~C~~C~EeyELKSk~~~~~~~I~dGAY~Tmi~Ri~s~~NPnFffL~Y~ 105 (257)
T 4esj_A 34 QSYCPN--CGNNPLN-----HFENNRPVADFYCNHCSEEFELKSKKGNFSSTINDGAYATMMKRVQADNNPNFFFLTYT 105 (257)
T ss_dssp HCCCTT--TCCSSCE-----EC----CCCEEECTTTCCEEEEEEEESSCCSEEEEEEHHHHHHHHHTTCCCEEEEEEEC
T ss_pred CCcCCC--CCChhhh-----hccCCCcccccccCCcchhheeccccCccCccccCchHHHHHHHHhccCCCCEEEEEec
Confidence 357885 4333332 223455665 8999999999987743 2247999963 255777888885
No 4
>2kxe_A DNA polymerase II small subunit; D-family, archara, helical BU transferase; HET: DNA; NMR {Pyrococcus horikoshii}
Probab=59.08 E-value=4.9 Score=30.46 Aligned_cols=29 Identities=17% Similarity=0.445 Sum_probs=26.6
Q ss_pred HhcccccccccChHHHHHHHHHhhcCccC
Q 023046 172 LYGLIHVRYILTSKGMAAMLEKYKNYDFG 200 (288)
Q Consensus 172 LYGLIHARYIlT~~GL~~M~eKY~~g~FG 200 (288)
.=+|+-++|++||..--.+.+-|++|+|-
T Consensus 8 Vk~L~~n~YLiTPsAYyLL~~~ykkg~Fs 36 (75)
T 2kxe_A 8 VKGLMKNGYLITPSAYYLLVGHFNEGKFS 36 (75)
T ss_dssp HHHHHTTTCEECHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHCCceeCchHHHHHHHHhhccccc
Confidence 45789999999999999999999999985
No 5
>2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding protein, unknown function, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.15.1
Probab=33.12 E-value=13 Score=28.49 Aligned_cols=13 Identities=23% Similarity=0.876 Sum_probs=10.6
Q ss_pred CccceeecCCCCc
Q 023046 223 SSTVKIYCPKCED 235 (288)
Q Consensus 223 ~stVKlYCP~C~D 235 (288)
..+-|.|||+|.-
T Consensus 26 ~~~~k~FCp~CGn 38 (79)
T 2con_A 26 SDMNRVFCGHCGN 38 (79)
T ss_dssp SCSSCCSCSSSCC
T ss_pred CCcccccccccCc
Confidence 4467999999976
No 6
>3vk8_A Probable formamidopyrimidine-DNA glycosylase; DNA glycosylase, hneil1 ortholog, DNA lesion, thymine glycol zincless finger; HET: DNA CTG; 2.00A {Acanthamoeba polyphaga mimivirus} PDB: 3vk7_A* 3a42_A 3a46_A* 3a45_A*
Probab=31.53 E-value=29 Score=31.82 Aligned_cols=14 Identities=7% Similarity=0.380 Sum_probs=11.0
Q ss_pred CccceeecCCCCcc
Q 023046 223 SSTVKIYCPKCEDI 236 (288)
Q Consensus 223 ~stVKlYCP~C~DV 236 (288)
....--|||.|+..
T Consensus 275 ~~R~t~~CP~CQ~~ 288 (295)
T 3vk8_A 275 NKRTTYWAPAIQKL 288 (295)
T ss_dssp CCCEEEECTTTCBC
T ss_pred CCCccEECCCCCCC
Confidence 45667899999874
No 7
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=27.44 E-value=30 Score=29.25 Aligned_cols=31 Identities=23% Similarity=0.540 Sum_probs=22.7
Q ss_pred hcCccCCCCcccCCCCCccccccCCCCCCccceeecCCCCccc
Q 023046 195 KNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIY 237 (288)
Q Consensus 195 ~~g~FG~CPRv~C~gq~lLPiGlSD~pg~stVKlYCP~C~DVY 237 (288)
.-..+..|++ | |.++.|++ + .+.||.|.-+-
T Consensus 136 lGvv~a~~~~--~-g~~m~~~~--~-------~~~cp~~g~~e 166 (179)
T 3m7n_A 136 MGVLRALCSN--C-KTEMVREG--D-------ILKCPECGRVE 166 (179)
T ss_dssp CEEEECBCTT--T-CCBCEECS--S-------SEECSSSCCEE
T ss_pred CCEEEecccc--c-CCceEECC--C-------EEECCCCCCEE
Confidence 3445557874 4 78899977 3 79999998764
No 8
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=26.51 E-value=51 Score=24.32 Aligned_cols=36 Identities=22% Similarity=0.457 Sum_probs=20.6
Q ss_pred CCCcccCCCCCccccccCCCCCC--------ccceeecCCCCccccC
Q 023046 201 RCPRVYCCGQPCLPVGQSDIPRS--------STVKIYCPKCEDIYYP 239 (288)
Q Consensus 201 ~CPRv~C~gq~lLPiGlSD~pg~--------stVKlYCP~C~DVY~P 239 (288)
-||+..|...-... + +.... .-=..||.+|..-||.
T Consensus 27 ~CP~p~C~~~v~~~-~--~~~~v~C~~~~~~~C~~~FC~~C~~~wH~ 70 (80)
T 2jmo_A 27 LCPRPGCGAGLLPE-P--DQRKVTCEGGNGLGCGFAFCRECKEAYHE 70 (80)
T ss_dssp CCCSSSCCCCCCCC-S--CTTSBCTTSSSTTCCSCCEETTTTEECCS
T ss_pred ECCCCCCCcccEEC-C--CCCcCCCCCCCCCCCCCeeccccCccccC
Confidence 59999997653332 1 11111 1124578888888776
No 9
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=25.25 E-value=36 Score=29.10 Aligned_cols=34 Identities=29% Similarity=0.667 Sum_probs=22.4
Q ss_pred CCCcccCCCCCccccccCCCCCCccceeecCCCCccccC
Q 023046 201 RCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYP 239 (288)
Q Consensus 201 ~CPRv~C~gq~lLPiGlSD~pg~stVKlYCP~C~DVY~P 239 (288)
.|||.+.-. ||.-+++.+|.. ..|||.|...-.+
T Consensus 24 ~C~~~~H~~--Cl~p~l~~~p~~---~W~C~~C~~~~~~ 57 (207)
T 3u5n_A 24 KCPKVFHLT--CHVPTLLSFPSG---DWICTFCRDIGKP 57 (207)
T ss_dssp SSSCEECTT--TSSSCCSSCCSS---CCCCTTTSCSSSC
T ss_pred CCCCccCCc--cCCCCCCCCCCC---CEEeCceeCcccc
Confidence 588887754 443355555532 5999999886544
No 10
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=23.65 E-value=10 Score=31.75 Aligned_cols=33 Identities=24% Similarity=0.497 Sum_probs=23.6
Q ss_pred CCCcccCCCCCcccccc---CCCCCCccceeecCCCC
Q 023046 201 RCPRVYCCGQPCLPVGQ---SDIPRSSTVKIYCPKCE 234 (288)
Q Consensus 201 ~CPRv~C~gq~lLPiGl---SD~pg~stVKlYCP~C~ 234 (288)
.|||++|..+...|+|. +++. ...-+.+||.|.
T Consensus 80 ~Cpr~Fh~~Cl~p~l~~~~l~~i~-~p~~~W~C~~C~ 115 (142)
T 2lbm_A 80 FCHNAFCKKCILRNLGRKELSTIM-DENNQWYCYICH 115 (142)
T ss_dssp SSCCEEEHHHHHHHTCHHHHHHHH-TSTTCCCCTTTC
T ss_pred CCCCeeeHhhcCCCCChhhhhhcc-cCCCCCEeeccc
Confidence 89999999998888883 2210 012278999995
No 11
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=22.78 E-value=43 Score=24.61 Aligned_cols=13 Identities=8% Similarity=-0.021 Sum_probs=10.8
Q ss_pred ceeecCCCCcccc
Q 023046 226 VKIYCPKCEDIYY 238 (288)
Q Consensus 226 VKlYCP~C~DVY~ 238 (288)
=.|.|+.|.-.|-
T Consensus 27 g~LvC~~c~~~YP 39 (67)
T 2jny_A 27 QLLVNERLNLAYR 39 (67)
T ss_dssp TEEEETTTTEEEE
T ss_pred CEEEcCCCCcccc
Confidence 3689999999883
No 12
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=22.52 E-value=45 Score=27.81 Aligned_cols=34 Identities=24% Similarity=0.613 Sum_probs=22.2
Q ss_pred CCCcccCCCCCccccccCCCCCCccceeecCCCCccccC
Q 023046 201 RCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYP 239 (288)
Q Consensus 201 ~CPRv~C~gq~lLPiGlSD~pg~stVKlYCP~C~DVY~P 239 (288)
.|||++.-.+ |--++...|.. ..|||.|...=.|
T Consensus 21 ~C~~~~H~~C--~~p~l~~~p~~---~W~C~~C~~~~~~ 54 (184)
T 3o36_A 21 KCPKVFHLSC--HVPTLTNFPSG---EWICTFCRDLSKP 54 (184)
T ss_dssp SSSCEECTTT--SSSCCSSCCSS---CCCCTTTSCSSSC
T ss_pred CCCcccCccc--cCCCCCCCCCC---CEECccccCcccc
Confidence 5888887654 33344455532 5999999986544
No 13
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=22.47 E-value=27 Score=23.34 Aligned_cols=21 Identities=29% Similarity=0.828 Sum_probs=11.3
Q ss_pred ccccccCCCCCCccceeecCCCCc
Q 023046 212 CLPVGQSDIPRSSTVKIYCPKCED 235 (288)
Q Consensus 212 lLPiGlSD~pg~stVKlYCP~C~D 235 (288)
+|-.++..+|.. ..|||.|..
T Consensus 29 Cl~p~l~~~P~g---~W~C~~C~~ 49 (51)
T 1f62_A 29 CLRPALYEVPDG---EWQCPACQP 49 (51)
T ss_dssp HHCTTCCSCCSS---CCSCTTTSC
T ss_pred cCCCCcCCCCCC---cEECcCccc
Confidence 443345555532 577777753
No 14
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=22.24 E-value=81 Score=28.11 Aligned_cols=34 Identities=26% Similarity=0.779 Sum_probs=24.6
Q ss_pred ccCCCCcccCCCCCccccccCCCCCCccceeecCCCCccccCCC
Q 023046 198 DFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRS 241 (288)
Q Consensus 198 ~FG~CPRv~C~gq~lLPiGlSD~pg~stVKlYCP~C~DVY~P~s 241 (288)
.+-.||+ | |.++.+ .....+.+||.|..++.|+.
T Consensus 106 ~~~fC~~--C-G~~~~~-------~~~~~~~~C~~C~~~~yp~~ 139 (269)
T 1vk6_A 106 SHKYCGY--C-GHEMYP-------SKTEWAMLCSHCRERYYPQI 139 (269)
T ss_dssp TTSBCTT--T-CCBEEE-------CSSSSCEEESSSSCEECCCC
T ss_pred cCCcccc--C-CCcCcc-------CCCceeeeCCCCCCEecCCC
Confidence 3668887 4 444444 35677999999999998864
No 15
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=21.17 E-value=65 Score=22.56 Aligned_cols=30 Identities=27% Similarity=0.565 Sum_probs=17.5
Q ss_pred CCCcccCCCCCccccccCCCCCCccceeecCCCCc
Q 023046 201 RCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCED 235 (288)
Q Consensus 201 ~CPRv~C~gq~lLPiGlSD~pg~stVKlYCP~C~D 235 (288)
.|||.+.-...-. .++.+|. -+.|||.|..
T Consensus 26 ~C~~~fH~~Cl~p--pl~~~p~---g~W~C~~C~~ 55 (61)
T 1mm2_A 26 TCPSSYHIHCLNP--PLPEIPN---GEWLCPRCTC 55 (61)
T ss_dssp SSCCCBCSSSSSS--CCSSCCS---SCCCCTTTTT
T ss_pred CCCHHHcccccCC--CcCcCCC---CccCChhhcC
Confidence 4777765443332 2444553 2789999953
No 16
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=21.04 E-value=52 Score=25.37 Aligned_cols=30 Identities=20% Similarity=0.525 Sum_probs=19.2
Q ss_pred CCCcccCCCCCccccccCCCCCCccceeecCCCCc
Q 023046 201 RCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCED 235 (288)
Q Consensus 201 ~CPRv~C~gq~lLPiGlSD~pg~stVKlYCP~C~D 235 (288)
.|||+|--. ||.-++..+|.. ..|||.|.-
T Consensus 42 ~C~~~fH~~--Cl~PpL~~~P~g---~W~C~~C~~ 71 (88)
T 1fp0_A 42 QCEFCFHLD--CHLPALQDVPGE---EWSCSLCHV 71 (88)
T ss_dssp TSSCEECTT--SSSTTCCCCCSS---SCCCCSCCC
T ss_pred CCCCceecc--cCCCCCCCCcCC---CcCCccccC
Confidence 588877654 342345555643 689999964
Done!