BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 023047
         (288 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4AK9|A Chain A, Structure Of Chloroplast Ftsy From Physcomitrella Patens
 pdb|4AK9|B Chain B, Structure Of Chloroplast Ftsy From Physcomitrella Patens
          Length = 318

 Score = 31.6 bits (70), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 3/56 (5%)

Query: 17  EIVTNTCPKPASAAALERKARPQKEQALNCPRCNSTNTKFCYYNNYSLTQPRYFCK 72
           EIV    PKP  AA L +  R   E+  +   C+++      + NY+L +    CK
Sbjct: 173 EIVMAEGPKPRPAAVLSQAVRRAVEEDFDVVLCDTSGR---LHTNYNLMEELRGCK 225


>pdb|1B7G|O Chain O, Glyceraldehyde 3-phosphate Dehydrogenase
 pdb|1B7G|Q Chain Q, Glyceraldehyde 3-phosphate Dehydrogenase
          Length = 340

 Score = 27.7 bits (60), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 14/57 (24%), Positives = 26/57 (45%)

Query: 106 LPDPATPPSHHPHQNPKIHDHGEDLNLSFPAATTQGYRSFSELVQLPNIDNKSQIPI 162
           +PDPAT PSHH      +  + +   ++  A TT  +  F  +     ++ K  + +
Sbjct: 183 VPDPATVPSHHAKDVNSVIRNLDIATMAVIAPTTLMHMHFINITLKDKVEKKDILSV 239


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.133    0.427 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,454,451
Number of Sequences: 62578
Number of extensions: 297667
Number of successful extensions: 582
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 580
Number of HSP's gapped (non-prelim): 4
length of query: 288
length of database: 14,973,337
effective HSP length: 98
effective length of query: 190
effective length of database: 8,840,693
effective search space: 1679731670
effective search space used: 1679731670
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)