BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023048
(288 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BGH|A Chain A, Crystal Structure Of Vinorine Synthase
pdb|2BGH|B Chain B, Crystal Structure Of Vinorine Synthase
Length = 421
Score = 119 bits (298), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 91/288 (31%), Positives = 142/288 (49%), Gaps = 37/288 (12%)
Query: 2 IGDGTTFSSFMKSWAATARKTLEEAVCRPSFD-ASSLFPPRDAYPREATAKAQFARFKKT 60
I D + ++F+ +W AT R E + P+FD A+ FPP D P +
Sbjct: 162 IADVLSLATFLNAWTATCRG--ETEIVLPNFDLAARHFPPVDNTPSPELVPDE------- 212
Query: 61 GRFVTRRFVFEAKAIVDLKAKATSSSVQHP-TRVEVVSAILSKCIMTAVKTKTGSHKPTL 119
V +RFVF+ + I L+A+A+S+S + +RV++V A + K ++ + K G+ +
Sbjct: 213 -NVVMKRFVFDKEKIGALRAQASSASEEKNFSRVQLVVAYIWKHVIDVTRAKYGAKNKFV 271
Query: 120 LTHAVNLRRKARPPLSAHLVGNIICHANTL--CTDDEADLD--GLVSLLREAITKPDADF 175
+ AVNLR + PPL + +GNI A L D E D D L+ LR ++ K + D
Sbjct: 272 VVQAVNLRSRMNPPLPHYAMGNI---ATLLFAAVDAEWDKDFPDLIGPLRTSLEKTEDDH 328
Query: 176 VRSLQGAGGFRNYFQALKDEDEEYADVKDRITFTSSSSFGFYEIDFGWGKPIWVGLAGFG 235
L G ++ + ++ ++FTS GFY++DFGWGKP+ F
Sbjct: 329 NHEL--LKGMTCLYE---------LEPQELLSFTSWCRLGFYDLDFGWGKPLSACTTTFP 377
Query: 236 GSIISFATTVVLMNTRLGDGIEAYVFLLEDYMNFLQVDKELLAFATLD 283
+LM+TR GDG+EA++ + ED M L V ELL+ D
Sbjct: 378 KR-----NAALLMDTRSGDGVEAWLPMAEDEMAMLPV--ELLSLVDSD 418
>pdb|4G0B|A Chain A, Structure Of Native Hct From Coffea Canephora
pdb|4G0B|B Chain B, Structure Of Native Hct From Coffea Canephora
Length = 436
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 62/285 (21%), Positives = 113/285 (39%), Gaps = 30/285 (10%)
Query: 4 DGTTFSSFMKSWAATARKTLEEAVCRPSFDASSLF----PPRDAY-------PREATAKA 52
DG + F+ SW+ AR V P F +L PP+ + P
Sbjct: 159 DGFSGLHFINSWSDMARGL---DVTLPPFIDRTLLRARDPPQPQFQHIEYQPPPALKVSP 215
Query: 53 QFARFKKTGRFVTRRFVFEAKAIVDLKAKATS--SSVQHPTRVEVVSAILSKCIMTAVKT 110
Q A+ F + I LKAK+ +++ + + E+++ + +C A
Sbjct: 216 QTAKSDSVPETAVSIFKLTREQISALKAKSKEDGNTISY-SSYEMLAGHVWRCACKARGL 274
Query: 111 KTGSHKPTLLTHAVNLRRKARPPLSAHLVGNIICHANTLCTDDEADLDGL---VSLLREA 167
+ + T L A + R + RP L GN+I A + + + + S + +A
Sbjct: 275 EV--DQGTKLYIATDGRARLRPSLPPGYFGNVIFTATPIAIAGDLEFKPVWYAASKIHDA 332
Query: 168 ITKPDADFVRSLQGAGGFRNYFQALKDEDEEYADVKDRITFTSSSSFGFYEIDFGWGKPI 227
+ + D D++RS + +AL + + TS ++ DFGWG+PI
Sbjct: 333 LARMDNDYLRSALDYLELQPDLKALVRGAHTFK--CPNLGITSWVRLPIHDADFGWGRPI 390
Query: 228 WVGLAGFGGSIISFATTVVLMNTRLGDG-IEAYVFLLEDYMNFLQ 271
++G G +SF ++ + DG + + L ++M Q
Sbjct: 391 FMGPGGIAYEGLSF-----ILPSPTNDGSMSVAISLQGEHMKLFQ 430
>pdb|2E1T|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1T|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1U|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
pdb|2E1U|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Length = 454
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 59/247 (23%), Positives = 104/247 (42%), Gaps = 38/247 (15%)
Query: 2 IGDGTTFSSFMKSWAATAR-----KTLEEAVCRPSFDASSLFPPRD-AYPREATAKA--- 52
+GD +T F+K+W + AR ++ RP +D +P D AY + A ++
Sbjct: 172 LGDASTRFCFLKAWTSIARSGNNDESFLANGTRPLYDRIIKYPMLDEAYLKRAKVESFNE 231
Query: 53 QFARFKKTGRFVTRR--FVFEAKAIVDLKAKATSSSVQHPTRVEVVSAILSKC-IMTAVK 109
+ G R F+ I LK + + Q PT +E VS+ C + +
Sbjct: 232 DYVTQSLAGPSDKLRATFILTRAVINQLKDRVLA---QLPT-LEYVSSFTVACAYIWSCI 287
Query: 110 TKTGSHKPTLLTHAVNLRRKARPPLSAHLVGNIICHANTLC-TDDEADLDGLVS---LLR 165
K+ + K L ++ R + +PP+ GN + + T+ +G ++ L+
Sbjct: 288 AKSRNDKLQLFGFPIDRRARMKPPIPTAYFGNCVGGCAAIAKTNLLIGKEGFITAAKLIG 347
Query: 166 EAITKPDADFVRSLQGAGGFRNYFQALKDEDEEYADVKDR-----ITFTSSS-SFGFYEI 219
E + K D+ + LKD+ E + D+ +T+ S + FY++
Sbjct: 348 ENLHKTLTDYKDGV------------LKDDMESFNDLVSEGMPTTMTWVSGTPKLRFYDM 395
Query: 220 DFGWGKP 226
DFGWGKP
Sbjct: 396 DFGWGKP 402
>pdb|4G2M|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 2)
Length = 439
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 57/254 (22%), Positives = 100/254 (39%), Gaps = 24/254 (9%)
Query: 4 DGTTFSSFMKSWAATARKTLEEAVCRPSFDASSLF----PPRDAY-------PREATAKA 52
DG + F+ SW+ AR V P F +L PP+ + P
Sbjct: 162 DGFSGLHFINSWSDMARGL---DVTLPPFIDRTLLRARDPPQPQFQHIEYQPPPALAVSP 218
Query: 53 QFARFKKTGRFVTRRFVFEAKAIVDLKAKAT--SSSVQHPTRVEVVSAILSKCIMTAVKT 110
Q A F + I LKAK+ +++ + + E+++ + +C A
Sbjct: 219 QTAASDSVPETAVSIFKLTREQISALKAKSKEDGNTISY-SSYEMLAGHVWRCACKARGL 277
Query: 111 KTGSHKPTLLTHAVNLRRKARPPLSAHLVGNIICHANTLCTDDEADLDGL---VSLLREA 167
+ + T L A + R + RP L GN+I A + + + + S + +A
Sbjct: 278 EV--DQGTKLYIATDGRARLRPSLPPGYFGNVIFTATPIAIAGDLEFKPVWYAASKIHDA 335
Query: 168 ITKPDADFVRSLQGAGGFRNYFQALKDEDEEYADVKDRITFTSSSSFGFYEIDFGWGKPI 227
+ + D D++RS + +AL + + TS ++ DFGWG+PI
Sbjct: 336 LARMDNDYLRSALDYLELQPDLKALVRGAHTFK--XPNLGITSWVRLPIHDADFGWGRPI 393
Query: 228 WVGLAGFGGSIISF 241
++G G +SF
Sbjct: 394 FMGPGGIAYEGLSF 407
>pdb|4G22|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
pdb|4G22|B Chain B, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
Length = 439
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 57/254 (22%), Positives = 100/254 (39%), Gaps = 24/254 (9%)
Query: 4 DGTTFSSFMKSWAATARKTLEEAVCRPSFDASSLF----PPRDAY-------PREATAKA 52
DG + F+ SW+ AR V P F +L PP+ + P
Sbjct: 162 DGFSGLHFINSWSDMARGL---DVTLPPFIDRTLLRARDPPQPQFQHIEYQPPPALAVSP 218
Query: 53 QFARFKKTGRFVTRRFVFEAKAIVDLKAKAT--SSSVQHPTRVEVVSAILSKCIMTAVKT 110
Q A F + I LKAK+ +++ + + E+++ + +C A
Sbjct: 219 QTAASDSVPETAVSIFKLTREQISALKAKSKEDGNTISY-SSYEMLAGHVWRCACKARGL 277
Query: 111 KTGSHKPTLLTHAVNLRRKARPPLSAHLVGNIICHANTLCTDDEADLDGL---VSLLREA 167
+ + T L A + R + RP L GN+I A + + + + S + +A
Sbjct: 278 EV--DQGTKLYIATDGRARLRPSLPPGYFGNVIFTATPIAIAGDLEFKPVWYAASKIHDA 335
Query: 168 ITKPDADFVRSLQGAGGFRNYFQALKDEDEEYADVKDRITFTSSSSFGFYEIDFGWGKPI 227
+ + D D++RS + +AL + + TS ++ DFGWG+PI
Sbjct: 336 LARMDNDYLRSALDYLELQPDLKALVRGAHTFK--XPNLGITSWVRLPIHDADFGWGRPI 393
Query: 228 WVGLAGFGGSIISF 241
++G G +SF
Sbjct: 394 FMGPGGIAYEGLSF 407
>pdb|2E1V|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
pdb|2E1V|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
Length = 454
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/247 (23%), Positives = 102/247 (41%), Gaps = 38/247 (15%)
Query: 2 IGDGTTFSSFMKSWAATAR-----KTLEEAVCRPSFDASSLFPPRD-AYPREATAKA--- 52
+GD +T F+K+W + AR ++ RP +D +P D AY + A ++
Sbjct: 172 LGDASTRFCFLKAWTSIARSGNNDESFLANGTRPLYDRIIKYPXLDEAYLKRAKVESFNE 231
Query: 53 QFARFKKTGRFVTRR--FVFEAKAIVDLKAKATSSSVQHPTRVEVVSAILSKC-IMTAVK 109
+ G R F+ I LK + + Q PT +E VS+ C + +
Sbjct: 232 DYVTQSLAGPSDKLRATFILTRAVINQLKDRVLA---QLPT-LEYVSSFTVACAYIWSCI 287
Query: 110 TKTGSHKPTLLTHAVNLRRKARPPLSAHLVGNIICHANTLC-TDDEADLDGLVS---LLR 165
K+ + K L ++ R + +PP+ GN + + T+ +G ++ L+
Sbjct: 288 AKSRNDKLQLFGFPIDRRARXKPPIPTAYFGNCVGGCAAIAKTNLLIGKEGFITAAKLIG 347
Query: 166 EAITKPDADFVRSLQGAGGFRNYFQALKDEDEEYADVKDR-----ITFTSSS-SFGFYEI 219
E + K D+ + LKD+ E + D+ T+ S + FY+
Sbjct: 348 ENLHKTLTDYKDGV------------LKDDXESFNDLVSEGXPTTXTWVSGTPKLRFYDX 395
Query: 220 DFGWGKP 226
DFGWGKP
Sbjct: 396 DFGWGKP 402
>pdb|2XR7|A Chain A, Crystal Structure Of Nicotiana Tabacum Malonyltransferase
(Ntmat1) Complexed With Malonyl-Coa
Length = 453
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/245 (23%), Positives = 85/245 (34%), Gaps = 33/245 (13%)
Query: 3 GDGTTFSSFMKSWAATARKTLEEAVCR----PSFDASSLFPPRDAYPREATAKAQFARFK 58
GDG T F+++WA + +E P +D S + P ++
Sbjct: 168 GDGATIVKFVRAWALLNKFGGDEQFLANEFIPFYDRSVIKDPNGVGXSIWNEXKKYKHXX 227
Query: 59 KTGRFVTR------RFVFEAKAIVDLKAKATS--SSVQHPTRVEVVSAILSKCIM---TA 107
K VT F+ I LK + + H T V A + CI+ A
Sbjct: 228 KXSDVVTPPDKVRGTFIITRHDIGKLKNLVLTRRPKLTHVTSFTVTCAYVWTCIIKSEAA 287
Query: 108 VKTKTGSHKPTLLTHAVNLRRKARPPLSAHLVGNIICHANTLCTDDEADLDG------LV 161
+ + A + R + PPL GN + + + DL G V
Sbjct: 288 TGEEIDENGXEFFGCAADCRAQFNPPLPPSYFGNAL--VGYVARTRQVDLAGKEGFTIAV 345
Query: 162 SLLREAITKPDADFVRSLQGAGGFRNYFQALKDEDEEYADVKDRITFTSSSSFGFYEIDF 221
L+ EAI K D L G+ F+ Y + D K ++ S Y DF
Sbjct: 346 ELIGEAIRKRXKDEEWILSGSW-FKEY---------DKVDAKRSLSVAGSPKLDLYAADF 395
Query: 222 GWGKP 226
GWG+P
Sbjct: 396 GWGRP 400
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,109,281
Number of Sequences: 62578
Number of extensions: 314340
Number of successful extensions: 695
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 680
Number of HSP's gapped (non-prelim): 11
length of query: 288
length of database: 14,973,337
effective HSP length: 98
effective length of query: 190
effective length of database: 8,840,693
effective search space: 1679731670
effective search space used: 1679731670
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)