Query 023048
Match_columns 288
No_of_seqs 186 out of 1227
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 15:28:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023048.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023048hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bgh_A Vinorine synthase; VS, 100.0 2.4E-53 8.2E-58 393.4 25.1 256 1-285 161-420 (421)
2 4g22_A Hydroxycinnamoyl-COA sh 100.0 7E-52 2.4E-56 385.5 24.7 255 1-272 159-434 (439)
3 2rkv_A Trichothecene 3-O-acety 100.0 2.5E-48 8.7E-53 362.8 20.7 266 1-282 157-449 (451)
4 2xr7_A Malonyltransferase; xen 100.0 1.9E-48 6.6E-53 363.8 18.6 254 1-272 166-444 (453)
5 2e1v_A Acyl transferase; BAHD 100.0 8.1E-48 2.8E-52 359.6 18.2 254 1-278 171-448 (454)
6 1q9j_A PAPA5, polyketide synth 96.9 0.051 1.7E-06 48.7 16.8 98 63-170 211-313 (422)
7 3fot_A 15-O-acetyltransferase; 96.6 0.014 4.7E-07 54.7 10.8 87 63-149 277-364 (519)
8 2jgp_A Tyrocidine synthetase 3 95.8 0.29 1E-05 45.2 15.5 98 62-170 302-400 (520)
9 1l5a_A Amide synthase, VIBH; n 95.8 0.22 7.5E-06 44.8 14.3 97 62-170 207-304 (436)
10 2xhg_A Tyrocidine synthetase A 95.1 0.99 3.4E-05 40.8 16.5 103 62-171 232-336 (466)
11 4hvm_A Tlmii; PSI-biology, mid 93.2 0.58 2E-05 42.8 10.6 158 1-170 143-327 (493)
12 2vsq_A Surfactin synthetase su 92.0 2.5 8.7E-05 43.8 14.6 99 63-170 228-327 (1304)
13 2k1o_A Putative; repressor, tr 77.6 6.3 0.00022 24.6 5.1 46 61-113 13-58 (66)
14 1x93_A Hypothetical protein HP 59.6 12 0.0004 22.5 3.4 38 64-108 2-39 (55)
15 2xl1_A Arginine attenuator pep 53.8 8 0.00027 19.2 1.7 17 90-106 8-24 (26)
No 1
>2bgh_A Vinorine synthase; VS, BAHD, acetyltransferase, auto-rickshaw, transferase; 2.6A {Rauvolfia serpentina}
Probab=100.00 E-value=2.4e-53 Score=393.40 Aligned_cols=256 Identities=33% Similarity=0.537 Sum_probs=213.8
Q ss_pred CcchHhHHHHHHHHHHHHHhcCCcCCCCCCcccc-cccCCC-CCCCCCchhhhhhhhccccCCCeeEEEEEEcHHHHHHH
Q 023048 1 MIGDGTTFSSFMKSWAATARKTLEEAVCRPSFDA-SSLFPP-RDAYPREATAKAQFARFKKTGRFVTRRFVFEAKAIVDL 78 (288)
Q Consensus 1 ~v~Dg~~~~~fl~~Wa~~~rg~~~~~~~~P~~dr-~~l~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~f~f~~~~i~~L 78 (288)
.++||.|+++||++||++|||.. .. .+|++|| +.+.++ +++|. . ......++++++|+|++++|++|
T Consensus 161 ~v~Dg~~~~~fl~~wa~~~rg~~-~~-~~P~~dr~~~l~p~~~~~~~-~--------~~~~~~~~~~~~f~f~~~~i~~L 229 (421)
T 2bgh_A 161 KIADVLSLATFLNAWTATCRGET-EI-VLPNFDLAARHFPPVDNTPS-P--------ELVPDENVVMKRFVFDKEKIGAL 229 (421)
T ss_dssp TTCCHHHHHHHHHHHHHHHTTCS-CC-CCCBCSHHHHHSCCCTTCCC-C--------CCCCCSSEEEEEEEECHHHHHHH
T ss_pred EechHHHHHHHHHHHHHHhcCCC-CC-CCCccccccccCCCcccCCC-C--------ccCCccceEEEEEEECHHHHHHH
Confidence 37999999999999999999975 33 6899999 777665 44443 1 11234578999999999999999
Q ss_pred HHHhccCCC-CCCchHHHHHHHHHHHHHHhhcccCCCCCceEEEEEeccccccCCCCCcccccceeeeecccccCCC-CC
Q 023048 79 KAKATSSSV-QHPTRVEVVSAILSKCIMTAVKTKTGSHKPTLLTHAVNLRRKARPPLSAHLVGNIICHANTLCTDDE-AD 156 (288)
Q Consensus 79 k~~a~~~~~-~~~S~~d~l~A~iW~~~~~ar~~~~~~~~~~~l~~~vd~R~rl~p~lp~~y~GN~~~~~~~~~~~~e-~~ 156 (288)
|+++.++.. .++|+||+|+||+|+|+++||....+.++++.+.++||+|+|++||+|++||||++..+.+.+++++ .+
T Consensus 230 K~~a~~~~~~~~~St~d~l~A~iW~~~~~Ar~~~~~~~~~~~l~~~vd~R~rl~pplP~~y~GN~~~~~~~~~~~~~~~~ 309 (421)
T 2bgh_A 230 RAQASSASEEKNFSRVQLVVAYIWKHVIDVTRAKYGAKNKFVVVQAVNLRSRMNPPLPHYAMGNIATLLFAAVDAEWDKD 309 (421)
T ss_dssp HHHTC-----CCCCHHHHHHHHHHHHHHHHHHHHSCCCSCEEEEEEEESGGGSSSCCCTTBCSCCEEEEEEEECTTCCCC
T ss_pred HHHhhccCCCCCCchhHhHHHHHHHHHHHHhcccCCCCCceEEEEEecCccccCCCCCCCccceEEEEEEEEeccccccc
Confidence 999986543 5799999999999999999987643335789999999999999999999999999999999888876 89
Q ss_pred hHHHHHHHHHHhhCcchhHHhhhccCcchHhHHHHHhhhhhhccCCCCeEEEeccCCCCccccccCCCceeeeeecCCCC
Q 023048 157 LDGLVSLLREAITKPDADFVRSLQGAGGFRNYFQALKDEDEEYADVKDRITFTSSSSFGFYEIDFGWGKPIWVGLAGFGG 236 (288)
Q Consensus 157 l~~~a~~iR~ai~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~tsw~~~~~y~~DFG~G~P~~~~~~~~~~ 236 (288)
|+++|.+||++|.+++++|+++..+ +.+..... ...+.+.+|||++|++|++|||||||+++++...+.
T Consensus 310 l~~~a~~ir~ai~~~~~~~~~~~~~----------~~~~~~~~-~~~~~~~vssw~~~~~y~~DFGwGkP~~v~~~~~~~ 378 (421)
T 2bgh_A 310 FPDLIGPLRTSLEKTEDDHNHELLK----------GMTCLYEL-EPQELLSFTSWCRLGFYDLDFGWGKPLSACTTTFPK 378 (421)
T ss_dssp GGGGHHHHHHHTCCCSSCHHHHHHH----------HHHHHHTS-CGGGEEEEEEETTSCGGGCCSSSCCCSEEECCCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHhhcc-CCCCeEEEeccccCCCcccccCCCccCeecccccCc
Confidence 9999999999999999988886443 22221111 223469999999999999999999999999877654
Q ss_pred cccccccEEEEeeCCCCCeEEEEEEcCHhHHHHhccchhhhhhhcCCCC
Q 023048 237 SIISFATTVVLMNTRLGDGIEAYVFLLEDYMNFLQVDKELLAFATLDPS 285 (288)
Q Consensus 237 ~~~~~~g~v~l~p~~~~~g~~v~v~L~~~~m~~l~~d~~~~~~~~~~~~ 285 (288)
+|.++++|+++++|++|.|+|++++|++|++ ||++|+++||+
T Consensus 379 -----~g~~~~~p~~~~~gi~v~v~L~~~~m~~f~~--e~~~~~~~~~~ 420 (421)
T 2bgh_A 379 -----RNAALLMDTRSGDGVEAWLPMAEDEMAMLPV--ELLSLVDSDFS 420 (421)
T ss_dssp -----TTEEEEEECTTSSSEEEEEEEEHHHHHHSCH--HHHTTBCCCCC
T ss_pred -----CCEEEEEecCCCCeEEEEEEcCHHHHHHHHH--HHHHhhcCCCC
Confidence 7999999999888999999999999999988 99999999997
No 2
>4g22_A Hydroxycinnamoyl-COA shikimate/quinate hydroxycinnamoyltransferase; BAHD superfamily; 1.70A {Coffea canephora} PDB: 4g2m_A 4g0b_A
Probab=100.00 E-value=7e-52 Score=385.52 Aligned_cols=255 Identities=21% Similarity=0.290 Sum_probs=203.5
Q ss_pred CcchHhHHHHHHHHHHHHHhcCCcCCCCCCcccccccCCCCCCCCCchhhhhhh------hcc----ccC-CCeeEEEEE
Q 023048 1 MIGDGTTFSSFMKSWAATARKTLEEAVCRPSFDASSLFPPRDAYPREATAKAQF------ARF----KKT-GRFVTRRFV 69 (288)
Q Consensus 1 ~v~Dg~~~~~fl~~Wa~~~rg~~~~~~~~P~~dr~~l~~~~~~p~~~~~~~~~~------~~~----~~~-~~~~~~~f~ 69 (288)
.++||.|+++||++||++|||.. ...+|++||+.+. ++++|.....+.+.. ... ... .++++++|+
T Consensus 159 ~v~Dg~~~~~Fl~~wa~~~rg~~--~~~~P~~dr~~l~-~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 235 (439)
T 4g22_A 159 HAADGFSGLHFINSWSDMARGLD--VTLPPFIDRTLLR-ARDPPQPQFQHIEYQPPPALAVSPQTAASDSVPETAVSIFK 235 (439)
T ss_dssp TTCCHHHHHHHHHHHHHHHTTCC--CSSCCBCCGGGGC-CCSSCCCSSCCGGGSCCC---------------CEEEEEEE
T ss_pred ccCcHHHHHHHHHHHHHHhCCCC--CCCCCcccccccc-CCCCCCCCcCcccccCCCCCcccccccccCCcccceEEEEE
Confidence 47999999999999999999975 4578999998664 333332211111100 000 111 578999999
Q ss_pred EcHHHHHHHHHHhccCC-CCCCchHHHHHHHHHHHHHHhhcccCCCCCceEEEEEeccccccCCCCCcccccceeeeecc
Q 023048 70 FEAKAIVDLKAKATSSS-VQHPTRVEVVSAILSKCIMTAVKTKTGSHKPTLLTHAVNLRRKARPPLSAHLVGNIICHANT 148 (288)
Q Consensus 70 f~~~~i~~Lk~~a~~~~-~~~~S~~d~l~A~iW~~~~~ar~~~~~~~~~~~l~~~vd~R~rl~p~lp~~y~GN~~~~~~~ 148 (288)
|++++|++||+++.++. ..++|+||+|+||+|+|+++||++.+ ++.+.+.++||+|+|++||+|++||||++..+.+
T Consensus 236 fs~~~i~~LK~~a~~~~~~~~~St~dal~A~iWr~~~rAr~~~~--~~~~~l~~~vd~R~rl~Pplp~~Y~GN~v~~~~~ 313 (439)
T 4g22_A 236 LTREQISALKAKSKEDGNTISYSSYEMLAGHVWRCACKARGLEV--DQGTKLYIATDGRARLRPSLPPGYFGNVIFTATP 313 (439)
T ss_dssp ECHHHHHHHHHGGGGGGCCCCCCHHHHHHHHHHHHHHHHTTCCT--TCEEEEEEEEECTTTSSSCCCTTBCSCCEEEECC
T ss_pred ECHHHHHHHHHHhhccCCCCCccHHHHHHHHHHHHHHHhcCCCC--CCcEEEEEEEcccCCCCCCCCCCcccceeehhhc
Confidence 99999999999997653 35799999999999999999998754 4799999999999999999999999999999999
Q ss_pred cccCCC---CChHHHHHHHHHHhhCcchhHHhhhccCcchHhHHHHHhhhhhhc-----cCCCCeEEEeccCCCCccccc
Q 023048 149 LCTDDE---ADLDGLVSLLREAITKPDADFVRSLQGAGGFRNYFQALKDEDEEY-----ADVKDRITFTSSSSFGFYEID 220 (288)
Q Consensus 149 ~~~~~e---~~l~~~a~~iR~ai~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-----~~~~~~~~~tsw~~~~~y~~D 220 (288)
.++++| .+|+++|.+||++|.+++++|+++.++ +++ ..++...+ ......+.+|||++|++|++|
T Consensus 314 ~~~~~el~~~~L~~~A~~Ir~ai~~~~~e~~~~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~vssw~r~~~y~~D 386 (439)
T 4g22_A 314 IAIAGDLEFKPVWYAASKIHDALARMDNDYLRSALD---YLE----LQPDLKALVRGAHTFKCPNLGITSWVRLPIHDAD 386 (439)
T ss_dssp EEEHHHHHHSCHHHHHHHHHHHHHTCSHHHHHHHHH---HHH----TCSCSTTCCCCHHHHCTTCEEEEECTTSCTTCCC
T ss_pred ceEHHHHhhCcHHHHHHHHHHHHHhhCHHHHHHHHH---HHH----hCccchhhcccCCcCcCCcEEEeecCcCCccccc
Confidence 988887 799999999999999999999998776 221 11111111 011235999999999999999
Q ss_pred cCCCceeeeeecCCCCcccccccEEEEeeCCCC-CeEEEEEEcCHhHHHHhcc
Q 023048 221 FGWGKPIWVGLAGFGGSIISFATTVVLMNTRLG-DGIEAYVFLLEDYMNFLQV 272 (288)
Q Consensus 221 FG~G~P~~~~~~~~~~~~~~~~g~v~l~p~~~~-~g~~v~v~L~~~~m~~l~~ 272 (288)
||||||+++++..... +|.++++|++++ ||++|.|+|++++|++|++
T Consensus 387 FGwGkP~~~~~~~~~~-----~g~~~~~p~~~~~ggi~v~v~L~~~~m~~f~~ 434 (439)
T 4g22_A 387 FGWGRPIFMGPGGIAY-----EGLSFILPSPTNDGSMSVAISLQGEHMKLFQS 434 (439)
T ss_dssp CSSCCCSEEEESSCCS-----TTEEEEEECTTCSSCEEEEEEEEHHHHHHHHH
T ss_pred cCCCCcceeeccccCC-----CcEEEEeecCCCCCcEEEEEECCHHHHHHHHH
Confidence 9999999999876655 799999999754 4799999999999999986
No 3
>2rkv_A Trichothecene 3-O-acetyltransferase; BAHD superfamily, deoxyniv T-2, acetyl COA, fusarium; HET: COA MPO ZBA; 1.60A {Gibberella zeae} PDB: 3b2s_A* 3b30_A* 2rkt_A* 2zba_A*
Probab=100.00 E-value=2.5e-48 Score=362.76 Aligned_cols=266 Identities=19% Similarity=0.197 Sum_probs=203.9
Q ss_pred CcchHhHHHHHHHHHHHHHhcCCcCC---CCCCcccccccCCCC--CCCCCchhhhhh--hh----ccccCCCeeEEEEE
Q 023048 1 MIGDGTTFSSFMKSWAATARKTLEEA---VCRPSFDASSLFPPR--DAYPREATAKAQ--FA----RFKKTGRFVTRRFV 69 (288)
Q Consensus 1 ~v~Dg~~~~~fl~~Wa~~~rg~~~~~---~~~P~~dr~~l~~~~--~~p~~~~~~~~~--~~----~~~~~~~~~~~~f~ 69 (288)
.++||.|+++||++||++|||.. .+ ..+|++||+.+.+.. .+|.....+... .. ......++++++|+
T Consensus 157 ~v~Dg~g~~~Fl~awa~~~rg~~-~~~~~~~~p~~dr~~~~p~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 235 (451)
T 2rkv_A 157 GAMDMVGQDAVIRLLSKACRNDP-FTEEEMTAMNLDRKTIVPYLENYTIGPEVDHQIVKADVAGGDAVLTPVSASWAFFT 235 (451)
T ss_dssp TTCCHHHHHHHHHHHHHHHHTCC-CCHHHHHHTTCCSTTSSCCCTTCCCCGGGTTCBCCTTSCC-------CCEEEEEEE
T ss_pred ccccHHHHHHHHHHHHHHhcCCC-CCccccccccCchhhccccccccCCCccccccccCCCCCCCCCCCCCCCceEEEEE
Confidence 47999999999999999999964 11 125889987555321 122111000000 00 11123568899999
Q ss_pred EcHHHHHHHHHHhccCC---CCCCchHHHHHHHHHHHHHHhh-c-ccCCCCCceEEEEEeccccccCCCCCcccccceee
Q 023048 70 FEAKAIVDLKAKATSSS---VQHPTRVEVVSAILSKCIMTAV-K-TKTGSHKPTLLTHAVNLRRKARPPLSAHLVGNIIC 144 (288)
Q Consensus 70 f~~~~i~~Lk~~a~~~~---~~~~S~~d~l~A~iW~~~~~ar-~-~~~~~~~~~~l~~~vd~R~rl~p~lp~~y~GN~~~ 144 (288)
|++++|++||+++.++. ..++|+||+|+||+|||+++|| . ..+ ++++.+.++||+|+|++ +|++||||++.
T Consensus 236 f~~~~i~~LK~~a~~~~~~~~~~~St~d~l~A~~Wr~~~~Ar~~~~~~--~~~~~l~~~vd~R~rl~--lP~~y~GN~~~ 311 (451)
T 2rkv_A 236 FSPKAMSELKDAATKTLDASTKFVSTDDALSAFIWKSASRVRLERIDG--SAPTEFCRAVDARPAMG--VSNNYPGLLQN 311 (451)
T ss_dssp ECHHHHHHHHHHHHTTCCTTCSCCCHHHHHHHHHHHHHHHHHTTTSCT--TSEEEEEEEEECHHHHT--CCTTCCSCCEE
T ss_pred ECHHHHHHHHHHHhhhccCCCCCccHHHHHHHHHHHHHHHHHhccCCC--CCceEEEEEecccccCC--CCCCCccccee
Confidence 99999999999998654 3579999999999999999998 2 333 57999999999999998 89999999999
Q ss_pred eecccccCCC---CChHHHHHHHHHHhhCcchhH-HhhhccCcchHhHHHHHhhhhhhc--c---CCCCeEEEeccCCCC
Q 023048 145 HANTLCTDDE---ADLDGLVSLLREAITKPDADF-VRSLQGAGGFRNYFQALKDEDEEY--A---DVKDRITFTSSSSFG 215 (288)
Q Consensus 145 ~~~~~~~~~e---~~l~~~a~~iR~ai~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~--~---~~~~~~~~tsw~~~~ 215 (288)
.+.+.++++| .+|+++|.+||++|.+++++| +++.++ ++ + ...+...+ . .....+.+|||++|+
T Consensus 312 ~~~~~~~~~el~~~~L~~~a~~ir~ai~~~~~~~~~~~~~~---~~---~-~~~~~~~~~~~~~~~~~~~~~~ssw~~~~ 384 (451)
T 2rkv_A 312 MTYHNSTIGEIANESLGATASRLRSELDPASMRQRTRGLAT---YL---H-NNPDKSNVSLTADADPSTSVMLSSWAKVG 384 (451)
T ss_dssp EEEEEEEHHHHHHSCHHHHHHHHHTTCCHHHHHHHHHHHHH---HH---H-HCSCCTTBCTTTTCCTTTCEEEEECTTCC
T ss_pred eecccCcHHHhccchHHHHHHHHHHHhcccCchhHHHHHHH---HH---h-cCCCccccccccccCCCCCEEEeccccCC
Confidence 9998887776 899999999999999998888 888766 22 1 11111111 1 112249999999999
Q ss_pred ccccccC--CCceeeeeecCCCCcccccccEEEEeeCCCCCeEEEEEEcCHhHHHHhccchhhhhhhcC
Q 023048 216 FYEIDFG--WGKPIWVGLAGFGGSIISFATTVVLMNTRLGDGIEAYVFLLEDYMNFLQVDKELLAFATL 282 (288)
Q Consensus 216 ~y~~DFG--~G~P~~~~~~~~~~~~~~~~g~v~l~p~~~~~g~~v~v~L~~~~m~~l~~d~~~~~~~~~ 282 (288)
+|++||| ||||++++.+..... +|.++++|..+++|++|.|+|++++|++|++|++|++|++.
T Consensus 385 ~y~~DFG~gwG~P~~v~~~~~~~~----~g~~~~~p~~~~ggi~v~v~L~~~~m~~f~~d~ef~~~~~~ 449 (451)
T 2rkv_A 385 LWDYDFGLGLGKPETVRRPIFEPV----ESLMYFMPKKPDGEFCAALSLRDEDMDRLKADKEWTKYAQY 449 (451)
T ss_dssp GGGCCTTCSSCSCSEEECCBCSCC----TTEEEECCCCTTSCEEEEEEEEHHHHHHHHHCHHHHTTCEE
T ss_pred ccccccCCCCCCceEEEcCCccCC----CCEEEEecCCCCCCEEEEEEeCHHHHHHHhcCHHHHhhhee
Confidence 9999998 899999986553322 78999998765668999999999999999999999999875
No 4
>2xr7_A Malonyltransferase; xenobiotics, naphthols; HET: MLC; 3.10A {Nicotiana tabacum}
Probab=100.00 E-value=1.9e-48 Score=363.77 Aligned_cols=254 Identities=21% Similarity=0.298 Sum_probs=197.9
Q ss_pred CcchHhHHHHHHHHHHHHHh-cCCc---CCCCCCcccccccCCCCCCCC-Cchhhhhhhhc-c----ccCCCeeEEEEEE
Q 023048 1 MIGDGTTFSSFMKSWAATAR-KTLE---EAVCRPSFDASSLFPPRDAYP-REATAKAQFAR-F----KKTGRFVTRRFVF 70 (288)
Q Consensus 1 ~v~Dg~~~~~fl~~Wa~~~r-g~~~---~~~~~P~~dr~~l~~~~~~p~-~~~~~~~~~~~-~----~~~~~~~~~~f~f 70 (288)
.++||.|+++||++||++|| |... .+..+|++||+.+.+|..++. +.......... . ....++++++|+|
T Consensus 166 ~v~Dg~~~~~Fl~~wa~~~r~G~~~~~~~~~~~P~~dr~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~f 245 (453)
T 2xr7_A 166 VAGDGATIVKFVRAWALLNKFGGDEQFLANEFIPFYDRSVIKDPNGVGMSIWNEMKKYKHMMKMSDVVTPPDKVRGTFII 245 (453)
T ss_dssp TTCCSHHHHHHHHHHHHHHHTTTCGGGSCGGGSCBCCCSSSCCSSCHHHHTTTTGGGCTTTSCCSCCCCCCSCCCEEEEE
T ss_pred eeechhHHHHHHHHHHHHhhcCCCcccCCCCCCCccccccccCCCCcchHHHHhccccCCccccccccCCCCceEEEEEE
Confidence 47999999999999999999 7621 134578999988775432100 00000000000 0 1234678999999
Q ss_pred cHHHHHHHHHHhccCCC--CCCchHHHHHHHHHHHHHHhhccc--C-CCCCceEEEEEeccccccCCCCCcccccceeee
Q 023048 71 EAKAIVDLKAKATSSSV--QHPTRVEVVSAILSKCIMTAVKTK--T-GSHKPTLLTHAVNLRRKARPPLSAHLVGNIICH 145 (288)
Q Consensus 71 ~~~~i~~Lk~~a~~~~~--~~~S~~d~l~A~iW~~~~~ar~~~--~-~~~~~~~l~~~vd~R~rl~p~lp~~y~GN~~~~ 145 (288)
++++|++||+++.++.. .++|+||+|+||+|+|+++||... . +.++++.+.++||+|+|++||+|++||||++..
T Consensus 246 ~~~~i~~Lk~~a~~~~~~~~~~St~~~l~A~lW~~~~~Ar~~~~~~~~~~~~~~l~~~vd~R~rl~pplP~~Y~GN~~~~ 325 (453)
T 2xr7_A 246 TRHDIGKLKNLVLTRRPKLTHVTSFTVTCAYVWTCIIKSEAATGEEIDENGMEFFGCAADCRAQFNPPLPPSYFGNALVG 325 (453)
T ss_dssp CHHHHHHHHHHHHHHSCCCSCCCHHHHHHHHHHHHHHHHHHHTTCCCCTTSEEEEEEECCTTSCSSSCCCTTBCSCCCCE
T ss_pred CHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHHHHHHhccccccCCCCcceEEEEEecccccCCCCCCcccccceeee
Confidence 99999999999976432 579999999999999999999762 0 125789999999999999999999999999999
Q ss_pred ecccccCCC----CChHHHHHHHHHHhhC--cchh-HHhhhccCcchHhHHHHHhhhhhhccCCCCeEEEeccCCCCccc
Q 023048 146 ANTLCTDDE----ADLDGLVSLLREAITK--PDAD-FVRSLQGAGGFRNYFQALKDEDEEYADVKDRITFTSSSSFGFYE 218 (288)
Q Consensus 146 ~~~~~~~~e----~~l~~~a~~iR~ai~~--~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~tsw~~~~~y~ 218 (288)
+.+.++++| .+|+++|.+||++|.+ .+++ |+++ + |++....+... ..+.+|||++|++|+
T Consensus 326 ~~~~~~~~el~~~~~l~~~a~~Ir~ai~~~~~~~e~~~~~--~----------~~~~~~~~~~~-~~~~vssw~~~~~y~ 392 (453)
T 2xr7_A 326 YVARTRQVDLAGKEGFTIAVELIGEAIRKRMKDEEWILSG--S----------WFKEYDKVDAK-RSLSVAGSPKLDLYA 392 (453)
T ss_dssp EEEEEEHHHHTSSSHHHHHHHHHHHHHTTSSSCHHHHHSS--C----------TTSCCCCSCGG-GEEEECSCSSCCGGG
T ss_pred eeeeeeHHHhcCcchHHHHHHHHHHHHHhhccCCccchhh--H----------HHHHHHhhccC-CcEEEeccccCCccc
Confidence 988887764 6899999999999999 5777 8887 4 33322222122 369999999999999
Q ss_pred cccCCCceeeeeecCCCCccccccc--EEEEeeCCCCC-eEEEEEEcCHhHHHHhcc
Q 023048 219 IDFGWGKPIWVGLAGFGGSIISFAT--TVVLMNTRLGD-GIEAYVFLLEDYMNFLQV 272 (288)
Q Consensus 219 ~DFG~G~P~~~~~~~~~~~~~~~~g--~v~l~p~~~~~-g~~v~v~L~~~~m~~l~~ 272 (288)
+|||||||+++++...+. +| .++++|+++++ |++|.|+|++++|++|++
T Consensus 393 ~DFG~G~P~~v~~~~~~~-----~g~~~~~l~~~~~~~ggi~v~v~L~~~~m~~f~~ 444 (453)
T 2xr7_A 393 ADFGWGRPEKLEFVSIDN-----DDGISMSLSKSKDSDGDLEIGLSLSKTRMNAFAA 444 (453)
T ss_dssp CCCSSCSCSEEEEGGGSS-----CSSCEEEEEECSSSTTCEEEEECCCHHHHHHHHH
T ss_pred cccCCCcceEEEeeeecC-----CCceEEEEeecCCCCCCEEEEEEeCHHHHHHHHH
Confidence 999999999999877654 68 88899887665 799999999999999964
No 5
>2e1v_A Acyl transferase; BAHD superfamily, seleno-methionine derivative, dendranthema morifolium, DMAT; 1.80A {Chrysanthemum x morifolium} PDB: 2e1u_A 2e1t_A
Probab=100.00 E-value=8.1e-48 Score=359.64 Aligned_cols=254 Identities=19% Similarity=0.306 Sum_probs=196.7
Q ss_pred CcchHhHHHHHHHHHHHHHh-cCC-c---CCCCCCcccccccCCCCCCCCCchhh-hhh----------hhccccCCCee
Q 023048 1 MIGDGTTFSSFMKSWAATAR-KTL-E---EAVCRPSFDASSLFPPRDAYPREATA-KAQ----------FARFKKTGRFV 64 (288)
Q Consensus 1 ~v~Dg~~~~~fl~~Wa~~~r-g~~-~---~~~~~P~~dr~~l~~~~~~p~~~~~~-~~~----------~~~~~~~~~~~ 64 (288)
.++||.|+++||++||++|| |.. . .+..+|++|| .+..| + +.... ... +.......+++
T Consensus 171 ~v~Dg~~~~~Fl~awa~~~r~g~~~~~~~~~~~~P~~dr-~l~~p---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (454)
T 2e1v_A 171 CLGDASTRFCFLKAWTSIARSGNNDESFLANGTRPLYDR-IIKYP---M-LDEAYLKRAKVESFNEDYVTQSLAGPSDKL 245 (454)
T ss_dssp GGCCHHHHHHHHHHHHHHHHTTSCCHHHHHHSCCCBCCC-CCCCH---H-HHHHHHHHTTCTTHHHHCCCCCCCCCCCEE
T ss_pred eecchhHHHHHHHHHHHHhccCCCccccCCCCCCCcccc-cCCCC---C-cchHHHHhhhccccccccCcccCCCCCCce
Confidence 37999999999999999999 752 1 1245799999 65421 2 11000 000 00001235678
Q ss_pred EEEEEEcHHHHHHHHHHhccCCC--CCCchHHHHHHHHHHHHHHhhcccCCCCCceEEEEEeccccccCCCCCcccccce
Q 023048 65 TRRFVFEAKAIVDLKAKATSSSV--QHPTRVEVVSAILSKCIMTAVKTKTGSHKPTLLTHAVNLRRKARPPLSAHLVGNI 142 (288)
Q Consensus 65 ~~~f~f~~~~i~~Lk~~a~~~~~--~~~S~~d~l~A~iW~~~~~ar~~~~~~~~~~~l~~~vd~R~rl~p~lp~~y~GN~ 142 (288)
+++|+|++++|++||+++.++.. .++|+||+|+||+|+|+++|| + ++.+.+.++||+|+|++||+|++||||+
T Consensus 246 ~~~f~f~~~~i~~LK~~a~~~~~~~~~~St~d~l~A~lWr~~~~Ar---~--~~~~~l~~~vd~R~rl~pplP~~Y~GN~ 320 (454)
T 2e1v_A 246 RATFILTRAVINQLKDRVLAQLPTLEYVSSFTVACAYIWSCIAKSR---N--DKLQLFGFPIDRRARMKPPIPTAYFGNC 320 (454)
T ss_dssp EEEEEECHHHHHHHHHHHHHHCTTCSCCCHHHHHHHHHHHHHHHHH---C--CSEEEEEEEEECGGGSSSCCCTTBCSCC
T ss_pred EEEEEECHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHHHhhhc---C--CCceEEEEEecchhccCCCCCcccccce
Confidence 99999999999999999976542 579999999999999999998 3 4799999999999999999999999999
Q ss_pred eeeecccccCCC----CChHHHHHHHHHHhhCcchhHHhhhccCcchHhH-HHHHhhhhhhccCCCCeEEEeccCCCCcc
Q 023048 143 ICHANTLCTDDE----ADLDGLVSLLREAITKPDADFVRSLQGAGGFRNY-FQALKDEDEEYADVKDRITFTSSSSFGFY 217 (288)
Q Consensus 143 ~~~~~~~~~~~e----~~l~~~a~~iR~ai~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~tsw~~~~~y 217 (288)
+..+.+.++++| .+|+++|.+||++|.+++++|+++.+. . ..+|++....+... ..+.+|||++|++|
T Consensus 321 ~~~~~~~~~~~el~~~~~l~~~a~~Ir~ai~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~-~~~~vssw~~~~~y 393 (454)
T 2e1v_A 321 VGGCAAIAKTNLLIGKEGFITAAKLIGENLHKTLTDYKDGVLK------DDMESFNDLVSEGMPT-TMTWVSGTPKLRFY 393 (454)
T ss_dssp EEEEEEEEEGGGTSHHHHHHHHHHHHHHHHHHHHHHHHTTCCC------C-----CHHHHHCCCS-EEEEEECCTTSCGG
T ss_pred eeeEEeecchhhccccccHHHHHHHHHHHHHhhhhhhhHHHHH------HHHHHHHHHHHhhcCC-ceEEEecCCCCCcc
Confidence 999998888876 579999999999999998666665443 1 22244432223222 25999999999999
Q ss_pred ccccCCCceeeeeecCCCCcccccccEEEEeeCCCCC-eEEEEEEcCHhHHHHhccchhhhh
Q 023048 218 EIDFGWGKPIWVGLAGFGGSIISFATTVVLMNTRLGD-GIEAYVFLLEDYMNFLQVDKELLA 278 (288)
Q Consensus 218 ~~DFG~G~P~~~~~~~~~~~~~~~~g~v~l~p~~~~~-g~~v~v~L~~~~m~~l~~d~~~~~ 278 (288)
++|||||||+++++...+. +|.++++|+++++ |++|.|+|++++|++|++ +|.+
T Consensus 394 ~~DFG~G~P~~v~~~~~~~-----~g~~~l~p~~~~~ggi~v~v~L~~~~m~~f~~--~~~~ 448 (454)
T 2e1v_A 394 DMDFGWGKPKKLETVSIDH-----NGAISINSCKESNEDLEIGVCISATQMEDFVH--IFDD 448 (454)
T ss_dssp GCCSSSCSCSEEEEGGGGG-----SSEEEEEECSSCTTSEEEEEEEEHHHHHHHHH--HHHH
T ss_pred cccccCccceEEEeeeeCC-----CCeEEEEecCCCCCCEEEEEEECHHHHHHHHH--HHHH
Confidence 9999999999999877654 7899999987765 799999999999999964 4443
No 6
>1q9j_A PAPA5, polyketide synthase associated protein 5; conjugating enzyme PAPA5, structural genomics, PSI protein structure initiative; 2.75A {Mycobacterium tuberculosis} SCOP: c.43.1.2 c.43.1.2
Probab=96.87 E-value=0.051 Score=48.66 Aligned_cols=98 Identities=21% Similarity=0.208 Sum_probs=67.3
Q ss_pred eeEEEEEEcHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHhhcccCCCCCceEEEEEeccccccCCCCC----ccc
Q 023048 63 FVTRRFVFEAKAIVDLKAKATSSSVQHPTRVEVVSAILSKCIMTAVKTKTGSHKPTLLTHAVNLRRKARPPLS----AHL 138 (288)
Q Consensus 63 ~~~~~f~f~~~~i~~Lk~~a~~~~~~~~S~~d~l~A~iW~~~~~ar~~~~~~~~~~~l~~~vd~R~rl~p~lp----~~y 138 (288)
.....+.++.+..++|++.|... .+|.+.++.|.+-..+.+-+.. + .....+.++++.|....|+++ ++.
T Consensus 211 ~~~~~~~l~~~~~~~l~~~a~~~---~~t~~~~l~aa~~~~l~r~~~~--~-~~~v~~g~~~~~R~~~~~~~~~~~~~~~ 284 (422)
T 1q9j_A 211 VPVTRLWLSKQQTSDLMAFGREH---RLSLNAVVAAAILLTEWQLRNT--P-HVPIPYVYPVDLRFVLAPPVAPTEATNL 284 (422)
T ss_dssp CCEEEECCCHHHHHHHHHHHTTT---TCCHHHHHHHHHHHHHHHHHTC--S-SCCEEEEEEEETTTTSSSCCCTTTBSCC
T ss_pred ccceEEEeCHHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHHhcccC--C-CceEEEeeeeecccccCCCCChhhhhhh
Confidence 45688899999999999999754 5889999888765555543212 1 367889999999998765543 234
Q ss_pred ccceeeeecccccCC-CCChHHHHHHHHHHhhC
Q 023048 139 VGNIICHANTLCTDD-EADLDGLVSLLREAITK 170 (288)
Q Consensus 139 ~GN~~~~~~~~~~~~-e~~l~~~a~~iR~ai~~ 170 (288)
+|.++... +.. +.++.+++..+++.+.+
T Consensus 285 vG~f~n~l----p~~~~~~~~~~l~~v~~~~~~ 313 (422)
T 1q9j_A 285 LGAASYLA----EIGPNTDIVDLASDIVATLRA 313 (422)
T ss_dssp EEEEEEEE----CCCSSCCHHHHHHHHHHHHHH
T ss_pred heeeeeee----eccCCCCHHHHHHHHHHHHHH
Confidence 55544322 223 25677888888887755
No 7
>3fot_A 15-O-acetyltransferase; fusarium head blight, trichothecene mycotoxin, deoxynivaleno toxin, fusarium graminearum, coenzyme A; 1.75A {Fusarium sporotrichioides} PDB: 3fp0_A*
Probab=96.56 E-value=0.014 Score=54.71 Aligned_cols=87 Identities=11% Similarity=0.043 Sum_probs=61.5
Q ss_pred eeEEEEEEcHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHhhcc-cCCCCCceEEEEEeccccccCCCCCcccccc
Q 023048 63 FVTRRFVFEAKAIVDLKAKATSSSVQHPTRVEVVSAILSKCIMTAVKT-KTGSHKPTLLTHAVNLRRKARPPLSAHLVGN 141 (288)
Q Consensus 63 ~~~~~f~f~~~~i~~Lk~~a~~~~~~~~S~~d~l~A~iW~~~~~ar~~-~~~~~~~~~l~~~vd~R~rl~p~lp~~y~GN 141 (288)
-....+.|+.++.++|++.|.+...+.+|-..+|.|.+-.++.+.... .........+..+||+|+.+.++.-.+|||.
T Consensus 277 ~~~~~~~ls~~~t~~L~~~ck~~~~~g~Tvt~~l~Aa~~~al~~~~~~~~~~~~~~~~~~~pvnlR~~l~~~~~~n~~~~ 356 (519)
T 3fot_A 277 PRCVIHKLSADESIDIVKAVKTRLGPGFTISHLTQAAIVLALLDHLKPNDLSDDEVFISPTSVDGRRWLREDIASNFYAM 356 (519)
T ss_dssp EEEEEEECCHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHC----CCTTCCEEEEEEEECGGGBCHHHHTSCCSC
T ss_pred cceEEEEcCHHHHHHHHHHHHhcCCCCeeHHHHHHHHHHHHHHhhcCCcccCCCccEEEEeeeeccccCCCcccccccce
Confidence 345788999999999999998765557888888877665555553211 0111246788999999999986555578888
Q ss_pred eeeeeccc
Q 023048 142 IICHANTL 149 (288)
Q Consensus 142 ~~~~~~~~ 149 (288)
+.......
T Consensus 357 ~~~~~~~~ 364 (519)
T 3fot_A 357 CQTAAVVR 364 (519)
T ss_dssp CEEEEEEE
T ss_pred eeeeeeeE
Confidence 77655443
No 8
>2jgp_A Tyrocidine synthetase 3; multifunctional enzyme, antibiotic biosynthesis, condensatio domain, peptide bond formation, ligase; 1.85A {Brevibacillus brevis}
Probab=95.77 E-value=0.29 Score=45.20 Aligned_cols=98 Identities=9% Similarity=0.009 Sum_probs=68.4
Q ss_pred CeeEEEEEEcHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHhhcccCCCCCceEEEEEeccccccCCCCCcccccc
Q 023048 62 RFVTRRFVFEAKAIVDLKAKATSSSVQHPTRVEVVSAILSKCIMTAVKTKTGSHKPTLLTHAVNLRRKARPPLSAHLVGN 141 (288)
Q Consensus 62 ~~~~~~f~f~~~~i~~Lk~~a~~~~~~~~S~~d~l~A~iW~~~~~ar~~~~~~~~~~~l~~~vd~R~rl~p~lp~~y~GN 141 (288)
......+.++.+..++|++.|... .+|.+.++.|.+-..+.+-.+ ...+.+..+++.|..- --++.+|+
T Consensus 302 ~~~~~~~~l~~~~~~~l~~~a~~~---~~T~~~~l~aa~a~~L~~~~~-----~~dv~~g~~~~gR~~~---~~~~~vG~ 370 (520)
T 2jgp_A 302 AGDQCTIGAGKALTEGLHQLAQAT---GTTLYMVLLAAYNVLLAKYAG-----QEDIIVGTPITGRSHA---DLEPIVGM 370 (520)
T ss_dssp BEEEEEEECCHHHHHHHHHHHHHH---TCCHHHHHHHHHHHHHHHHHT-----CSCEEEEEEECCCCSG---GGTTCCSC
T ss_pred CccEEEEeCCHHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHHhcC-----CCCeEEEeccCCCCch---hhhccEEe
Confidence 345678899999999999988654 578898888765444443322 3578999999999752 12456777
Q ss_pred eeeeecccccCCC-CChHHHHHHHHHHhhC
Q 023048 142 IICHANTLCTDDE-ADLDGLVSLLREAITK 170 (288)
Q Consensus 142 ~~~~~~~~~~~~e-~~l~~~a~~iR~ai~~ 170 (288)
++-....+..... .++.+++..+++.+.+
T Consensus 371 f~n~lplr~~~~~~~~~~~~l~~v~~~~~~ 400 (520)
T 2jgp_A 371 FVNTLAMRNKPQREKTFSEFLQEVKQNALD 400 (520)
T ss_dssp CCEEEEEEECCCTTSBHHHHHHHHHHHHHH
T ss_pred eeeeeeEEecCCCCCCHHHHHHHHHHHHHH
Confidence 6665555555543 6788888888887654
No 9
>1l5a_A Amide synthase, VIBH; nonribosomal peptide synthetase, NRPS condensation domain, vibriobactin, biosynthetic protein; 2.55A {Vibrio cholerae} SCOP: c.43.1.2 c.43.1.2
Probab=95.77 E-value=0.22 Score=44.76 Aligned_cols=97 Identities=13% Similarity=0.094 Sum_probs=68.4
Q ss_pred CeeEEEEEEcHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHhhcccCCCCCceEEEEEeccccccCCCCCcccccc
Q 023048 62 RFVTRRFVFEAKAIVDLKAKATSSSVQHPTRVEVVSAILSKCIMTAVKTKTGSHKPTLLTHAVNLRRKARPPLSAHLVGN 141 (288)
Q Consensus 62 ~~~~~~f~f~~~~i~~Lk~~a~~~~~~~~S~~d~l~A~iW~~~~~ar~~~~~~~~~~~l~~~vd~R~rl~p~lp~~y~GN 141 (288)
......+.++.+..++|++.|... .+|.+.++.|.+-..+.+-. + ..+.+..+++.|.. + --++.+|+
T Consensus 207 ~~~~~~~~l~~~~~~~l~~~a~~~---~~t~~~~l~aa~~~~L~~~~----g--~dv~ig~~~~~R~~--~-~~~~~vG~ 274 (436)
T 1l5a_A 207 HAVSLSYTLNSQLNHLLLKLANAN---QIGWPDALVALCALYLESAE----P--DAPWLWLPFMNRWG--S-VAANVPGL 274 (436)
T ss_dssp CEEEEEEECCHHHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHHHS----T--TCCEEEEEECCCTT--S-GGGGSCSC
T ss_pred cceeeEEecCHHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHHHhh----C--CceEEeeecccCCC--h-HHhcCcce
Confidence 345788899999999999998754 58889988886544444332 1 36789999999964 2 22456677
Q ss_pred eeeeecccccCCC-CChHHHHHHHHHHhhC
Q 023048 142 IICHANTLCTDDE-ADLDGLVSLLREAITK 170 (288)
Q Consensus 142 ~~~~~~~~~~~~e-~~l~~~a~~iR~ai~~ 170 (288)
++-.......... .++.+++..+++.+.+
T Consensus 275 f~n~lplr~~~~~~~t~~~~l~~v~~~~~~ 304 (436)
T 1l5a_A 275 MVNSLPLLRLSAQQTSLGNYLKQSGQAIRS 304 (436)
T ss_dssp CCEEEEEECCCCTTCBHHHHHHHHHHHHHH
T ss_pred EEEEEEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 6655555555443 6788888888887755
No 10
>2xhg_A Tyrocidine synthetase A; isomerase, nonribosomal peptide synthesis, cofactor-independ epimerization; 1.50A {Brevibacillus brevis}
Probab=95.12 E-value=0.99 Score=40.76 Aligned_cols=103 Identities=16% Similarity=0.102 Sum_probs=70.6
Q ss_pred CeeEEEEEEcHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHhhcccCCCCCceEEEEEeccccccCC-CCCccccc
Q 023048 62 RFVTRRFVFEAKAIVDLKAKATSSSVQHPTRVEVVSAILSKCIMTAVKTKTGSHKPTLLTHAVNLRRKARP-PLSAHLVG 140 (288)
Q Consensus 62 ~~~~~~f~f~~~~i~~Lk~~a~~~~~~~~S~~d~l~A~iW~~~~~ar~~~~~~~~~~~l~~~vd~R~rl~p-~lp~~y~G 140 (288)
......+.++.+..++|++.+... ..+|.++++.|.+-..+.+-.+ .....+.++++.|....+ +--.+.+|
T Consensus 232 ~~~~~~~~l~~~~~~~l~~~~~~~--~~~t~~~~llaa~~~~l~~~~~-----~~dv~ig~~~~gR~~~~~~~~~~~~vG 304 (466)
T 2xhg_A 232 SVRNMRIRLHPEETEQLLKHANQA--YQTEINDLLLAALGLAFAEWSK-----LAQIVIHLEGHGREDIIEQANVARTVG 304 (466)
T ss_dssp GEEEEEEECCHHHHHHHHHTGGGT--TTCCHHHHHHHHHHHHHHHHHC-----CSEEEEEEEECCCCSCSTTCCCTTCCS
T ss_pred cceEEEEEcCHHHHHHHHHHhHHh--hCCCHHHHHHHHHHHHHHHHhC-----CCceEEEecCCCCCccccCCCcccccc
Confidence 345678899999999999877532 2478888888865555544432 357889999999976421 11245667
Q ss_pred ceeeeecccccCCC-CChHHHHHHHHHHhhCc
Q 023048 141 NIICHANTLCTDDE-ADLDGLVSLLREAITKP 171 (288)
Q Consensus 141 N~~~~~~~~~~~~e-~~l~~~a~~iR~ai~~~ 171 (288)
+++-.......... .++.+++..+++.+..+
T Consensus 305 ~f~n~lplr~~~~~~~~~~~~l~~v~~~~~~~ 336 (466)
T 2xhg_A 305 WFTSQYPVLLDLKQTAPLSDYIKLTKENMRKI 336 (466)
T ss_dssp CCCEEEEEEEECSCCCSHHHHHHHHHHHHHHS
T ss_pred ceeeeccEEEecCCCCCHHHHHHHHHHHHHhC
Confidence 76655555554443 68899999999988765
No 11
>4hvm_A Tlmii; PSI-biology, midwest center for structural genomics, MCSG, N product biosynthesis, natPro; 2.70A {Streptoalloteichus hindustanus}
Probab=93.18 E-value=0.58 Score=42.83 Aligned_cols=158 Identities=13% Similarity=-0.032 Sum_probs=85.0
Q ss_pred CcchHhHHHHHHHHHHHHHhcCCcCCCCCCcccccccCCCCCCCCCch----hh----h----hhhh--cc-ccCCCeeE
Q 023048 1 MIGDGTTFSSFMKSWAATARKTLEEAVCRPSFDASSLFPPRDAYPREA----TA----K----AQFA--RF-KKTGRFVT 65 (288)
Q Consensus 1 ~v~Dg~~~~~fl~~Wa~~~rg~~~~~~~~P~~dr~~l~~~~~~p~~~~----~~----~----~~~~--~~-~~~~~~~~ 65 (288)
.++||.|+..|++.+.+...|.. .+ .+..+ .....+....... .. . +.+. .. ........
T Consensus 143 ~i~Dg~S~~~l~~~l~~~Y~g~~-~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~W~~~l~~~~~l~~~~~~~~~~~~ 217 (493)
T 4hvm_A 143 MLLDARSRYMVLGAVWQAYYGRF-RP--AQYRD--FAEVADFHPLDRETVRVARHRWWSRRLPALPVRGGDGGPVGPPET 217 (493)
T ss_dssp TTCCHHHHHHHHHHHHHHHTTCC-CG--GGSBC--GGGTTTCCTTCSHHHHHHHHHHHHHHGGGSCCCC-------CCEE
T ss_pred hhccHHHHHHHHHHHHHHhCCCC-CC--cCHHH--HHHHHhhhhcccChhhHHHHHHHHHhccCCCCCCCCCCCCCCCee
Confidence 37999999999999999997763 11 11111 1110111000000 00 0 0000 00 00112567
Q ss_pred EEEEEcHHHHHHHHHHhccCCCCCCc--hHHHHHHHHHHHHHHhhcc-------cCCCCCceEEEEEeccccccCCCCCc
Q 023048 66 RRFVFEAKAIVDLKAKATSSSVQHPT--RVEVVSAILSKCIMTAVKT-------KTGSHKPTLLTHAVNLRRKARPPLSA 136 (288)
Q Consensus 66 ~~f~f~~~~i~~Lk~~a~~~~~~~~S--~~d~l~A~iW~~~~~ar~~-------~~~~~~~~~l~~~vd~R~rl~p~lp~ 136 (288)
..+.++.+..++|++.|... .+| .+.++.|.+-..+.+-+.- ..+ ...+.+..+++.|..- --+
T Consensus 218 ~~~~l~~~~~~~l~~~a~~~---~vt~~~~~~l~aa~a~~L~~~~~~~~~~~~~~~g-~~dv~~g~~~~gR~~~---~~~ 290 (493)
T 4hvm_A 218 SRLRVPGSRWQALTEPGGPL---GGNGSLAMAALTAWWLWTQGAGTGTDTGAGTGTG-KDSLYLSTEVDLRDHL---QLG 290 (493)
T ss_dssp EEEEEEHHHHHHHHCC---------CHHHHHHHHHHHHHHHC-----------------CEEEEEEEEEHHHHT---TCC
T ss_pred EEEEcCHHHHHHHHHHHHHc---CCCchHHHHHHHHHHHHHHHhhhcccccccCcCC-CCCEEEEeeccCCCCc---chh
Confidence 78999999999999988754 578 8888887654444333000 012 3678999999999652 234
Q ss_pred ccccceeeeecccccCC---CCChHHHHHHHHHHhhC
Q 023048 137 HLVGNIICHANTLCTDD---EADLDGLVSLLREAITK 170 (288)
Q Consensus 137 ~y~GN~~~~~~~~~~~~---e~~l~~~a~~iR~ai~~ 170 (288)
+.+|+++-......... +.++.+++..+++.+.+
T Consensus 291 ~~vG~f~n~lplr~~~~~~~~~t~~~~l~~v~~~~~~ 327 (493)
T 4hvm_A 291 SVVGPLTDRVVFGVDLTGLREPSFRDLMSRTQAGFLD 327 (493)
T ss_dssp SBCSCCEEEEEEEEECTTCSSCBHHHHHHHHHHHHHH
T ss_pred cCeEeeeceeEEEEecCCCcCCCHHHHHHHHHHHHHH
Confidence 56777665544444332 35788888888877654
No 12
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=91.97 E-value=2.5 Score=43.83 Aligned_cols=99 Identities=19% Similarity=0.120 Sum_probs=67.7
Q ss_pred eeEEEEEEcHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHhhcccCCCCCceEEEEEeccccccCCCCCcccccce
Q 023048 63 FVTRRFVFEAKAIVDLKAKATSSSVQHPTRVEVVSAILSKCIMTAVKTKTGSHKPTLLTHAVNLRRKARPPLSAHLVGNI 142 (288)
Q Consensus 63 ~~~~~f~f~~~~i~~Lk~~a~~~~~~~~S~~d~l~A~iW~~~~~ar~~~~~~~~~~~l~~~vd~R~rl~p~lp~~y~GN~ 142 (288)
.....+.++++..++||+.|... .+|.+.+|.|.+-..+.+-. + ...+.+..+++.|..-.+.+ ++.+|+.
T Consensus 228 ~~~~~~~l~~~~~~~L~~~a~~~---~~T~~~vllaa~a~~L~r~t----g-~~dvv~G~pvsgR~~~~~~~-~~~vG~f 298 (1304)
T 2vsq_A 228 PKELLFSPSEAETKAFTELAKSQ---HTTLSTALQAVWSVLISRYQ----Q-SGDLAFGTVVSGRPAEIKGV-EHMVGLF 298 (1304)
T ss_dssp EEEEEECCCHHHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHHHH----T-CSEEEEEEEECCCCTTSTTG-GGCCSSC
T ss_pred cceEEEecCHHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHHhc----C-CCCEEEEEEeCCCCccchhh-hcccccc
Confidence 45677889999999999998754 57888888775433333332 1 36789999999997532222 3556666
Q ss_pred eeeecccccCCC-CChHHHHHHHHHHhhC
Q 023048 143 ICHANTLCTDDE-ADLDGLVSLLREAITK 170 (288)
Q Consensus 143 ~~~~~~~~~~~e-~~l~~~a~~iR~ai~~ 170 (288)
+-....+..... .++.++...+++...+
T Consensus 299 vntlplr~~~~~~~s~~~ll~~v~~~~~~ 327 (1304)
T 2vsq_A 299 INVVPRRVKLSEGITFNGLLKRLQEQSLQ 327 (1304)
T ss_dssp CEEEEEEEECCTTCBHHHHHHHHHHHHHH
T ss_pred eeEEEEEecCCCCCcHHHHHHHHHHHHHH
Confidence 555555554443 6888888888887654
No 13
>2k1o_A Putative; repressor, transcriptional regulator, D binding, ribbon-helix-helix, HP0564, JHP0511, unknown funct regulation; NMR {Helicobacter pylori}
Probab=77.59 E-value=6.3 Score=24.58 Aligned_cols=46 Identities=22% Similarity=0.290 Sum_probs=35.8
Q ss_pred CCeeEEEEEEcHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHhhcccCC
Q 023048 61 GRFVTRRFVFEAKAIVDLKAKATSSSVQHPTRVEVVSAILSKCIMTAVKTKTG 113 (288)
Q Consensus 61 ~~~~~~~f~f~~~~i~~Lk~~a~~~~~~~~S~~d~l~A~iW~~~~~ar~~~~~ 113 (288)
.+.-+..|+||.++-+.|++.|.++ .|.+..+|=+.+.++.....+
T Consensus 13 k~~~~Vs~Y~SkEey~~L~klA~eE-------~eSV~sfIKR~IlK~l~ykkg 58 (66)
T 2k1o_A 13 KRNFSVTFYLSKEEHDVLRRLADEE-------VESVNSFVKRHILKTIIYKKG 58 (66)
T ss_dssp CCCEEEEEEEEHHHHHHHHHHHHTT-------CSCHHHHHHHHHHHHHCSSCS
T ss_pred ccceEEEEEecHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhcC
Confidence 3456779999999999999999865 455778888888888765443
No 14
>1x93_A Hypothetical protein HP0222; JHP0208, transcription, regula METJ, MNT, PArg, COPG, REPA; NMR {Helicobacter pylori} SCOP: a.43.1.3
Probab=59.57 E-value=12 Score=22.53 Aligned_cols=38 Identities=18% Similarity=0.276 Sum_probs=27.7
Q ss_pred eEEEEEEcHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHhh
Q 023048 64 VTRRFVFEAKAIVDLKAKATSSSVQHPTRVEVVSAILSKCIMTAV 108 (288)
Q Consensus 64 ~~~~f~f~~~~i~~Lk~~a~~~~~~~~S~~d~l~A~iW~~~~~ar 108 (288)
.+..|+||.++-+.|++.|.++ .|.+..+|=+.+.++.
T Consensus 2 ~~Vs~Y~SkEey~~L~klA~eE-------~eSV~sfIKR~IlK~l 39 (55)
T 1x93_A 2 RAVSLYFSDEQYQKLEKMANEE-------EESVGSYIKRYILKAL 39 (55)
T ss_dssp EEEEEEECHHHHHHHHHHHHHT-------TSCTTHHHHHHHHHHH
T ss_pred ceEEEEecHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 3568999999999999999765 2334455556666664
No 15
>2xl1_A Arginine attenuator peptide; translation, antibiotic, ribosome, cytomegalovirus; NMR {Neurospora crassa}
Probab=53.81 E-value=8 Score=19.24 Aligned_cols=17 Identities=18% Similarity=0.104 Sum_probs=14.1
Q ss_pred CchHHHHHHHHHHHHHH
Q 023048 90 PTRVEVVSAILSKCIMT 106 (288)
Q Consensus 90 ~S~~d~l~A~iW~~~~~ 106 (288)
++..|-|+-|+|+++..
T Consensus 8 ftsqdylsdhlwralna 24 (26)
T 2xl1_A 8 FTSQDYLSDHLWRALNA 24 (26)
T ss_pred eecHHHHHHHHHHHHhc
Confidence 56789999999998753
Done!