BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023049
(288 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XMB|A Chain A, X-ray Structure Of Iaa-aminoacid Hydrolase From
Arabidopsis Thaliana Gene At5g56660
pdb|2Q43|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Iaa-Aminoacid Hydrolase From Arabidopsis Thaliana Gene
At5g56660
Length = 418
Score = 367 bits (942), Expect = e-102, Method: Compositional matrix adjust.
Identities = 170/241 (70%), Positives = 203/241 (84%)
Query: 30 EELTQIPVKFLDFAKKPEIFYWMVNIRRKIHENPELGFQEFETSKLIRAELDQMGIPYKF 89
E+ +QI K L+FAK PE+F WMV IRRKIHENPELG++E ETSKLIR+EL+ +GI Y++
Sbjct: 8 EDTSQIQTKLLEFAKSPEVFDWMVKIRRKIHENPELGYEELETSKLIRSELELIGIKYRY 67
Query: 90 PVAVTGVVGYIGTGQPPFVALRADMDALAMEESVEWEHKSKVPGKMHACGHDAHVAMLLG 149
PVA+TGV+GYIGTG+PPFVALRADMDAL ++E VEWEHKSK+ GKMHACGHD HV MLLG
Sbjct: 68 PVAITGVIGYIGTGEPPFVALRADMDALPIQEGVEWEHKSKIAGKMHACGHDGHVTMLLG 127
Query: 150 AAKMLQVFRHEIKGTIVLVFQPAEEGGGGAKKMLDAGALENVEAIFGLHVSSLFPVGTVA 209
AAK+L RH ++GT+VL+FQPAEEG GAKKM + GAL+NVEAIFG+H+S+ P G A
Sbjct: 128 AAKILHEHRHHLQGTVVLIFQPAEEGLSGAKKMREEGALKNVEAIFGIHLSARIPFGKAA 187
Query: 210 SRPGPTLAAGGFFEAVINGKGGHAAIPQHTIDPIVAASNVIVSLQHLVSREADPLDSQVV 269
SR G LA G FEAVI GKGGHAAIPQHTIDP+VAAS++++SLQ LVSRE DPLDS+VV
Sbjct: 188 SRAGSFLAGAGVFEAVITGKGGHAAIPQHTIDPVVAASSIVLSLQQLVSRETDPLDSKVV 247
Query: 270 V 270
Sbjct: 248 T 248
>pdb|1YSJ|A Chain A, Crystal Structure Of Bacillus Subtilis Yxep Protein
(Apc1829), A Dinuclear Metal Binding Peptidase From M20
Family
pdb|1YSJ|B Chain B, Crystal Structure Of Bacillus Subtilis Yxep Protein
(Apc1829), A Dinuclear Metal Binding Peptidase From M20
Family
Length = 404
Score = 199 bits (505), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 115/251 (45%), Positives = 148/251 (58%), Gaps = 8/251 (3%)
Query: 22 SSDVSLSPEELTQIPVKFLDFAKKPEIFYW-MVNIRRKIHENPELGFQEFETSKLIRAEL 80
SS V L E L F A + F+ ++N RR +HE+PEL FQE ET+K IR L
Sbjct: 8 SSGVDLGTENLY-----FQSNAXADKAFHTRLINXRRDLHEHPELSFQEVETTKKIRRWL 62
Query: 81 DQMGIP-YKFPVAVTGVVGYI-GTGQPPFVALRADMDALAMEESVEWEHKSKVPGKMHAC 138
++ I P TGV+ I G P +A+RAD+DAL ++E SKV G HAC
Sbjct: 63 EEEQIEILDVPQLKTGVIAEIKGREDGPVIAIRADIDALPIQEQTNLPFASKVDGTXHAC 122
Query: 139 GHDAHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEEGGGGAKKMLDAGALENVEAIFGLH 198
GHD H A ++G A +L R E+KGT+ +FQPAEE GA+K+L+AG L V AIFG H
Sbjct: 123 GHDFHTASIIGTAXLLNQRRAELKGTVRFIFQPAEEIAAGARKVLEAGVLNGVSAIFGXH 182
Query: 199 VSSLFPVGTVASRPGPTLAAGGFFEAVINGKGGHAAIPQHTIDPIVAASNVIVSLQHLVS 258
PVGT+ + GP A+ FE VI GKGGHA+IP ++IDPI AA +I LQ +VS
Sbjct: 183 NKPDLPVGTIGVKEGPLXASVDRFEIVIKGKGGHASIPNNSIDPIAAAGQIISGLQSVVS 242
Query: 259 READPLDSQVV 269
R L + VV
Sbjct: 243 RNISSLQNAVV 253
>pdb|4EWT|A Chain A, The Crystal Structure Of A Putative Aminohydrolase From
Methicillin Resistant Staphylococcus Aureus
pdb|4EWT|C Chain C, The Crystal Structure Of A Putative Aminohydrolase From
Methicillin Resistant Staphylococcus Aureus
pdb|4EWT|D Chain D, The Crystal Structure Of A Putative Aminohydrolase From
Methicillin Resistant Staphylococcus Aureus
pdb|4EWT|B Chain B, The Crystal Structure Of A Putative Aminohydrolase From
Methicillin Resistant Staphylococcus Aureus
Length = 392
Score = 153 bits (387), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 87/221 (39%), Positives = 121/221 (54%), Gaps = 2/221 (0%)
Query: 52 MVNIRRKIHENPELGFQEFETSKLIRAELDQMGIPYKFPVAVTGVVGYIGTGQP-PFVAL 110
M+ IRR +H++PEL F E ET+K I + + V G+ I +G+P +A+
Sbjct: 16 MIEIRRYLHQHPELSFHEDETAKYIAEFYKGKDVEVETNVGPRGIKVTIDSGKPGKTLAI 75
Query: 111 RADMDALAMEESVEWEHKSKVPGKMHACGHDAHVAMLLGAAKMLQVFRHEIKGTIVLVFQ 170
RAD DAL + E S+ G MHACGHDAH A +L A+ L + G +V++ Q
Sbjct: 76 RADFDALPITEDTGLSFASQNKGVMHACGHDAHTAYMLVLAETLAEMKDSFTGKVVVIHQ 135
Query: 171 PAEE-GGGGAKKMLDAGALENVEAIFGLHVSSLFPVGTVASRPGPTLAAGGFFEAVINGK 229
PAEE GGAK M++ G L+ V+ + G+HV S G V RPG FF+ + GK
Sbjct: 136 PAEEVPPGGAKTMIENGVLDGVDHVLGVHVMSTMKTGKVYYRPGYVQTGRAFFKLKVQGK 195
Query: 230 GGHAAIPQHTIDPIVAASNVIVSLQHLVSREADPLDSQVVV 270
GGH + P D IVA S + +LQ +VSR P ++ VV
Sbjct: 196 GGHGSSPHMANDAIVAGSYFVTALQTVVSRRLSPFETGVVT 236
>pdb|3IO1|A Chain A, Crystal Structure Of Aminobenzoyl-Glutamate Utilization
Protein From Klebsiella Pneumoniae
pdb|3IO1|B Chain B, Crystal Structure Of Aminobenzoyl-Glutamate Utilization
Protein From Klebsiella Pneumoniae
Length = 445
Score = 83.2 bits (204), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 93/196 (47%), Gaps = 13/196 (6%)
Query: 50 YWMVNIRRKIHENPELGFQEFETSKLIRAELDQMGIPYK----FPVAVTGVVGYIGTGQP 105
Y + R I + G + ET + G P + F GVV + TG+P
Sbjct: 49 YQLALGRDVIDADSRXGLPDEETLARAFERAREQGAPERWLPAFEGGFAGVVATLDTGRP 108
Query: 106 -PFVALRADMDALAMEESVEWEHK-------SKVPGKMHACGHDAHVAMLLGAAKMLQVF 157
P +A R D DAL + E + H+ S G HACGHD H A+ LG A +L+ +
Sbjct: 109 GPTLAFRVDXDALDLNEQHDDSHRPHRDHFASCNAGXXHACGHDGHTAIGLGLAHVLKQY 168
Query: 158 RHEIKGTIVLVFQPAEEGGGGAKKMLDAGALENVEAIFGLHVSSLFPVGTVASRPGPTLA 217
++ G I L+FQPAEEG GA+ + AG +++V+ +H+ + P GTV G
Sbjct: 169 AAQLNGVIKLIFQPAEEGTRGARAXVAAGVVDDVDYFTAIHIGTGVPAGTVVC-GGDNFX 227
Query: 218 AGGFFEAVINGKGGHA 233
A F+ +G HA
Sbjct: 228 ATTKFDVQFSGVAAHA 243
>pdb|3RAM|A Chain A, Crystal Structure Of Hmra
pdb|3RAM|B Chain B, Crystal Structure Of Hmra
pdb|3RAM|C Chain C, Crystal Structure Of Hmra
pdb|3RAM|D Chain D, Crystal Structure Of Hmra
Length = 394
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 80/168 (47%), Gaps = 24/168 (14%)
Query: 38 KFLDFAKKPEIFYWMVNIRRKIHENPELGFQEFETSKLIRAELDQMGIPYKFPVA--VTG 95
+ LD+ + + Y + I +IHE PELG +E S+ + L + + +A TG
Sbjct: 6 QILDYIETNK--YSYIEISHRIHERPELGNEEIFASRTLIDRLKEHDFEIETEIAGHATG 63
Query: 96 VVGYIGTG-QPPFVALRADMDALAMEESVEWEHKSKVPGKMHACGHD-AHVAMLLGAAKM 153
+ +G P + A+ DAL PG HACGH+ A +LGA +
Sbjct: 64 FIATYDSGLDGPAIGFLAEYDAL--------------PGLGHACGHNIIGTASVLGAIGL 109
Query: 154 LQVFRHEIKGTIVLVFQPAEEGG--GGAK-KMLDAGALENVEAIFGLH 198
QV +I G +V++ PAEEGG G AK + AG ++ ++ +H
Sbjct: 110 KQVID-QIGGKVVVLGCPAEEGGENGSAKASYVKAGVIDQIDIALXIH 156
>pdb|1CG2|A Chain A, Carboxypeptidase G2
pdb|1CG2|B Chain B, Carboxypeptidase G2
pdb|1CG2|C Chain C, Carboxypeptidase G2
pdb|1CG2|D Chain D, Carboxypeptidase G2
Length = 393
Score = 31.2 bits (69), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 56/116 (48%), Gaps = 12/116 (10%)
Query: 145 AMLLGAAKMLQVFRHEIKGTIVLVFQPAEEGGG-GAKKMLDAGALENVEAIFGLHVSSLF 203
A++L K+L+ + GTI ++F EE G G++ ++ EA +V S
Sbjct: 125 AVILHTLKLLKEYGVRDYGTITVLFNTDEEKGSFGSRDLIQE------EAKLADYVLSFE 178
Query: 204 PVGTVASRPGPTLAAGG--FFEAVINGKGGHA-AIPQHTIDPIVAASNVIVSLQHL 256
P T A +L G + + I GK HA A P+ ++ +V AS++++ ++
Sbjct: 179 P--TSAGDEKLSLGTSGIAYVQVNITGKASHAGAAPELGVNALVEASDLVLRTMNI 232
>pdb|2PN5|A Chain A, Crystal Structure Of Tep1r
Length = 1325
Score = 28.1 bits (61), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 96 VVGYIGTGQPPFVALRADMDALAMEESVEW-EHKSKVPGKMHACGHDAHVAM 146
+ ++GT V +D+DA +E++++W K G+ G + H M
Sbjct: 903 LTAFVGTSMQTAVKYISDIDAAMVEKALDWLASKQHFSGRFDKAGAEYHKEM 954
>pdb|4D94|A Chain A, Crystal Structure Of Tep1r
Length = 1325
Score = 28.1 bits (61), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 96 VVGYIGTGQPPFVALRADMDALAMEESVEW-EHKSKVPGKMHACGHDAHVAM 146
+ ++GT V +D+DA +E++++W K G+ G + H M
Sbjct: 903 LTAFVGTSMQTAVKYISDIDAAMVEKALDWLASKQHFSGRFDKAGAEYHKEM 954
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,056,153
Number of Sequences: 62578
Number of extensions: 326841
Number of successful extensions: 815
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 804
Number of HSP's gapped (non-prelim): 10
length of query: 288
length of database: 14,973,337
effective HSP length: 98
effective length of query: 190
effective length of database: 8,840,693
effective search space: 1679731670
effective search space used: 1679731670
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)