Query 023049
Match_columns 288
No_of_seqs 192 out of 1367
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 08:04:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023049.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023049hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02693 IAA-amino acid hydrol 100.0 1.2E-49 2.6E-54 382.0 32.1 254 33-286 30-283 (437)
2 COG1473 AbgB Metal-dependent a 100.0 6.8E-50 1.5E-54 375.5 27.7 246 38-286 3-251 (392)
3 PLN02280 IAA-amino acid hydrol 100.0 8E-47 1.7E-51 365.4 29.6 248 39-286 86-333 (478)
4 TIGR01891 amidohydrolases amid 100.0 5.6E-43 1.2E-47 328.4 27.2 234 53-286 2-237 (363)
5 PRK06915 acetylornithine deace 100.0 2.4E-40 5.2E-45 316.2 27.7 240 35-286 4-281 (422)
6 PRK08588 succinyl-diaminopimel 100.0 3.6E-39 7.7E-44 303.7 27.5 228 50-286 2-243 (377)
7 PRK13013 succinyl-diaminopimel 100.0 1.8E-38 4E-43 303.4 28.1 240 38-286 4-288 (427)
8 PRK13004 peptidase; Reviewed 100.0 2.6E-37 5.6E-42 293.5 28.0 239 36-286 3-253 (399)
9 PRK06837 acetylornithine deace 100.0 3.5E-37 7.7E-42 295.1 27.4 240 35-286 7-286 (427)
10 PRK06133 glutamate carboxypept 100.0 6.4E-37 1.4E-41 292.0 28.7 236 37-286 26-274 (410)
11 TIGR03320 ygeY M20/DapE family 100.0 1.2E-36 2.6E-41 288.5 26.8 238 37-286 2-251 (395)
12 TIGR03526 selenium_YgeY putati 100.0 1.9E-36 4E-41 287.3 27.6 237 38-286 3-251 (395)
13 PRK07522 acetylornithine deace 100.0 2E-36 4.3E-41 285.4 26.0 227 50-286 4-252 (385)
14 PRK05111 acetylornithine deace 100.0 4E-36 8.8E-41 283.3 26.6 225 50-286 5-255 (383)
15 TIGR01246 dapE_proteo succinyl 100.0 3.8E-36 8.1E-41 282.5 25.3 229 53-286 2-246 (370)
16 PRK07338 hypothetical protein; 100.0 8.6E-36 1.9E-40 283.0 27.8 235 36-286 5-267 (402)
17 PRK13009 succinyl-diaminopimel 100.0 6.8E-36 1.5E-40 280.9 26.4 231 51-286 3-249 (375)
18 PRK07473 carboxypeptidase; Pro 100.0 1.8E-35 3.8E-40 279.1 27.5 223 50-286 11-248 (376)
19 TIGR01892 AcOrn-deacetyl acety 100.0 7.4E-36 1.6E-40 279.3 24.6 222 54-286 1-242 (364)
20 TIGR01900 dapE-gram_pos succin 100.0 7.5E-36 1.6E-40 281.3 24.7 224 55-286 1-251 (373)
21 TIGR01910 DapE-ArgE acetylorni 100.0 6E-36 1.3E-40 281.7 24.0 226 54-286 2-252 (375)
22 PRK08596 acetylornithine deace 100.0 1.5E-35 3.3E-40 283.3 26.8 236 38-286 3-272 (421)
23 TIGR01880 Ac-peptdase-euk N-ac 100.0 1.8E-35 3.8E-40 280.8 26.9 234 50-286 9-267 (400)
24 PRK13983 diaminopimelate amino 100.0 5.9E-35 1.3E-39 276.4 26.2 232 50-286 5-270 (400)
25 PRK13007 succinyl-diaminopimel 100.0 1.3E-34 2.8E-39 270.0 26.4 219 50-286 7-237 (352)
26 PRK09133 hypothetical protein; 100.0 2.5E-34 5.4E-39 278.7 26.5 232 50-286 37-338 (472)
27 PRK08651 succinyl-diaminopimel 100.0 1E-33 2.2E-38 267.9 26.0 225 50-286 6-260 (394)
28 PRK08737 acetylornithine deace 100.0 1.9E-33 4.2E-38 264.2 25.7 215 50-286 6-239 (364)
29 PRK08201 hypothetical protein; 100.0 2.7E-33 5.9E-38 270.3 25.4 213 36-255 2-238 (456)
30 PRK06446 hypothetical protein; 100.0 2.2E-33 4.8E-38 269.6 23.4 200 50-256 2-220 (436)
31 PRK08652 acetylornithine deace 100.0 8E-33 1.7E-37 257.2 24.1 214 50-286 2-221 (347)
32 TIGR01883 PepT-like peptidase 100.0 6.6E-33 1.4E-37 259.5 22.9 217 52-286 2-235 (361)
33 PRK07906 hypothetical protein; 100.0 8.5E-33 1.8E-37 264.6 24.1 230 53-286 2-296 (426)
34 PRK07907 hypothetical protein; 100.0 2.5E-32 5.5E-37 263.1 25.9 241 36-286 6-313 (449)
35 PRK08262 hypothetical protein; 100.0 1.4E-32 3E-37 267.4 22.7 230 50-286 44-351 (486)
36 PRK07318 dipeptidase PepV; Rev 100.0 2.7E-32 5.9E-37 264.1 23.1 238 38-280 4-340 (466)
37 PRK00466 acetyl-lysine deacety 100.0 6.5E-32 1.4E-36 251.9 24.6 207 50-286 10-221 (346)
38 TIGR01886 dipeptidase dipeptid 100.0 8.5E-32 1.8E-36 260.7 25.0 232 39-279 4-338 (466)
39 PRK09104 hypothetical protein; 100.0 1.7E-31 3.6E-36 258.4 25.4 214 36-255 5-246 (464)
40 PRK04443 acetyl-lysine deacety 100.0 2.5E-31 5.4E-36 248.2 25.6 214 50-286 6-226 (348)
41 PRK15026 aminoacyl-histidine d 100.0 1.3E-30 2.9E-35 252.9 25.2 217 50-286 10-261 (485)
42 PRK13381 peptidase T; Provisio 100.0 1.6E-30 3.4E-35 247.4 24.1 216 52-277 3-268 (404)
43 PRK05469 peptidase T; Provisio 100.0 1.4E-30 3E-35 248.1 22.1 219 50-277 2-270 (408)
44 COG0624 ArgE Acetylornithine d 100.0 3.3E-30 7.2E-35 245.4 24.7 239 40-286 5-276 (409)
45 PRK07079 hypothetical protein; 100.0 5.9E-30 1.3E-34 248.0 26.2 210 36-255 7-246 (469)
46 PRK06156 hypothetical protein; 100.0 4.1E-29 9E-34 244.9 25.9 206 44-255 42-334 (520)
47 TIGR01887 dipeptidaselike dipe 100.0 4.4E-29 9.6E-34 240.4 24.1 225 50-278 2-325 (447)
48 PRK12892 allantoate amidohydro 100.0 1.7E-29 3.8E-34 240.5 20.9 212 50-286 10-282 (412)
49 PRK07205 hypothetical protein; 100.0 3.7E-29 7.9E-34 240.9 22.8 205 50-255 11-273 (444)
50 TIGR01902 dapE-lys-deAc N-acet 100.0 7.4E-29 1.6E-33 230.3 23.7 206 54-286 1-212 (336)
51 TIGR01893 aa-his-dipept aminoa 100.0 8.2E-29 1.8E-33 240.5 24.6 220 50-286 4-255 (477)
52 PRK12893 allantoate amidohydro 100.0 1.4E-28 2.9E-33 234.5 23.1 214 50-286 10-281 (412)
53 PRK09290 allantoate amidohydro 100.0 2.1E-28 4.5E-33 233.5 23.7 212 50-286 7-282 (413)
54 TIGR01882 peptidase-T peptidas 100.0 1.1E-28 2.4E-33 235.4 20.2 197 50-255 3-250 (410)
55 PRK12891 allantoate amidohydro 100.0 5.6E-27 1.2E-31 223.9 25.3 215 51-286 11-281 (414)
56 PRK12890 allantoate amidohydro 100.0 1.3E-26 2.8E-31 221.2 24.0 211 51-286 10-283 (414)
57 KOG2275 Aminoacylase ACY1 and 99.9 1.2E-25 2.5E-30 207.5 24.6 233 50-286 25-284 (420)
58 TIGR01879 hydantase amidase, h 99.9 3.8E-25 8.3E-30 210.4 22.8 202 64-286 25-274 (401)
59 TIGR03176 AllC allantoate amid 99.9 2.4E-24 5.2E-29 205.3 23.0 216 50-286 3-275 (406)
60 PRK08554 peptidase; Reviewed 99.9 2.9E-24 6.3E-29 206.6 21.3 200 51-255 2-235 (438)
61 PRK13799 unknown domain/N-carb 99.9 1.5E-23 3.1E-28 208.3 24.6 214 50-286 181-460 (591)
62 PRK13590 putative bifunctional 99.9 7.2E-23 1.6E-27 203.5 24.1 212 50-286 181-458 (591)
63 KOG2276 Metalloexopeptidases [ 99.7 8.2E-17 1.8E-21 148.2 15.7 192 37-235 5-231 (473)
64 PRK10199 alkaline phosphatase 99.6 1E-13 2.2E-18 128.4 16.3 129 52-185 37-188 (346)
65 PF01546 Peptidase_M20: Peptid 99.5 2.5E-14 5.5E-19 121.3 8.0 92 109-200 1-101 (189)
66 COG4187 RocB Arginine degradat 99.5 3.5E-13 7.6E-18 125.5 15.1 202 50-255 8-262 (553)
67 TIGR03106 trio_M42_hydro hydro 99.5 6.7E-13 1.5E-17 123.8 15.5 129 50-179 3-223 (343)
68 PRK09961 exoaminopeptidase; Pr 99.3 1.2E-10 2.6E-15 108.8 16.1 143 53-201 3-224 (344)
69 COG1363 FrvX Cellulase M and r 99.3 1.3E-10 2.9E-15 108.0 15.0 146 50-201 2-238 (355)
70 TIGR03107 glu_aminopep glutamy 99.2 3.6E-10 7.9E-15 105.7 15.5 142 54-201 2-236 (350)
71 PF07687 M20_dimer: Peptidase 99.2 3.1E-11 6.7E-16 93.9 6.7 70 217-286 4-78 (111)
72 COG2195 PepD Di- and tripeptid 99.2 9.7E-11 2.1E-15 111.1 10.9 220 50-284 5-278 (414)
73 PRK09864 putative peptidase; P 99.2 5E-10 1.1E-14 104.8 15.5 140 53-201 3-231 (356)
74 KOG2194 Aminopeptidases of the 98.2 7.9E-06 1.7E-10 82.8 10.5 134 52-200 59-226 (834)
75 PF04389 Peptidase_M28: Peptid 98.1 1.3E-05 2.8E-10 67.6 7.4 84 107-199 2-89 (179)
76 PF05343 Peptidase_M42: M42 gl 97.8 0.00014 3.1E-09 66.6 9.7 60 137-201 130-192 (292)
77 KOG3946 Glutaminyl cyclase [Po 96.9 0.043 9.2E-07 49.5 14.4 137 38-185 39-200 (338)
78 COG2234 Iap Predicted aminopep 96.1 0.016 3.5E-07 55.7 7.2 43 142-186 231-274 (435)
79 KOG2195 Transferrin receptor a 95.8 0.032 6.9E-07 56.8 8.0 76 94-185 339-420 (702)
80 PF05450 Nicastrin: Nicastrin; 95.4 0.1 2.2E-06 46.4 8.7 66 106-184 1-73 (234)
81 KOG2526 Predicted aminopeptida 92.9 1.9 4.2E-05 41.4 11.9 112 75-199 166-305 (555)
82 cd00433 Peptidase_M17 Cytosol 90.3 9.1 0.0002 37.5 14.0 120 50-175 154-296 (468)
83 PRK00913 multifunctional amino 89.7 7.9 0.00017 38.1 13.1 122 50-175 171-310 (483)
84 PTZ00412 leucyl aminopeptidase 87.5 15 0.00032 36.7 13.2 119 50-174 212-354 (569)
85 PRK05015 aminopeptidase B; Pro 86.2 19 0.00041 34.7 13.0 119 51-175 101-247 (424)
86 PF00883 Peptidase_M17: Cytoso 86.1 20 0.00044 33.2 12.7 110 53-174 1-140 (311)
87 KOG2597 Predicted aminopeptida 77.7 29 0.00062 34.3 10.8 125 50-176 189-332 (513)
88 COG0260 PepB Leucyl aminopepti 69.9 1.2E+02 0.0025 30.0 13.0 123 50-175 167-309 (485)
89 COG4882 Predicted aminopeptida 67.5 21 0.00046 33.8 7.0 71 94-185 179-259 (486)
90 PF09868 DUF2095: Uncharacteri 50.0 21 0.00046 28.1 3.3 52 33-87 61-112 (128)
91 KOG3566 Glycosylphosphatidylin 38.1 1.9E+02 0.004 29.3 8.4 90 73-184 91-192 (617)
92 COG0065 LeuC 3-isopropylmalate 37.3 3.9E+02 0.0084 25.8 10.4 97 141-250 305-412 (423)
93 PF06675 DUF1177: Protein of u 35.3 1.2E+02 0.0027 27.2 6.1 89 103-201 29-132 (276)
94 PF04114 Gaa1: Gaa1-like, GPI 29.5 1.7E+02 0.0036 29.1 6.7 71 93-184 3-76 (504)
95 PF09940 DUF2172: Domain of un 28.5 1.9E+02 0.0042 27.6 6.6 62 100-185 124-187 (386)
96 PRK02256 putative aminopeptida 25.1 1.1E+02 0.0025 29.9 4.7 19 68-86 40-58 (462)
97 PF13974 YebO: YebO-like prote 24.3 92 0.002 22.9 2.9 45 8-64 10-54 (80)
98 COG4635 HemG Flavodoxin [Energ 24.2 54 0.0012 27.5 1.9 32 59-90 4-35 (175)
99 PF03682 UPF0158: Uncharacteri 23.7 79 0.0017 26.3 2.9 52 35-89 87-143 (163)
100 PTZ00371 aspartyl aminopeptida 21.9 4.4E+02 0.0096 25.9 8.1 50 68-117 21-90 (465)
101 PRK02256 putative aminopeptida 21.1 5E+02 0.011 25.5 8.2 17 160-176 277-293 (462)
102 PRK05066 arginine repressor; P 21.0 1.2E+02 0.0026 25.1 3.4 35 50-89 8-43 (156)
103 PRK02813 putative aminopeptida 20.9 4.2E+02 0.009 25.7 7.6 65 51-115 3-86 (428)
No 1
>PLN02693 IAA-amino acid hydrolase
Probab=100.00 E-value=1.2e-49 Score=382.02 Aligned_cols=254 Identities=67% Similarity=1.089 Sum_probs=225.7
Q ss_pred cchhhHHHHHhcCCCcHHHHHHHHHHhHhCCCCCCChHHHHHHHHHHHHhCCCCeEeecCCceEEEEECCCCCcEEEEEe
Q 023049 33 TQIPVKFLDFAKKPEIFYWMVNIRRKIHENPELGFQEFETSKLIRAELDQMGIPYKFPVAVTGVVGYIGTGQPPFVALRA 112 (288)
Q Consensus 33 ~~~~~~i~~~~~~~~~~~~li~~~~~L~~iPs~s~~E~~~~~~i~~~l~~~G~~~~~~~~~~nvia~~~~~~~~~i~l~a 112 (288)
+.+..++.+..+..++.+++++++|+||++||+|++|.++++||.++|+++|++++....++||+|+++++++|.|+|+|
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~r~~lh~~PE~s~~E~~ta~~i~~~L~~~G~~~~~~~~~~~via~~g~~~g~~i~l~~ 109 (437)
T PLN02693 30 SQIQINLLELAKSPEVFDWMVRIRRKIHENPELGYEEFETSKLIRSELDLIGIKYRYPVAITGIIGYIGTGEPPFVALRA 109 (437)
T ss_pred hhhHHHHHHHhhhhhhHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHCCCeeEecCCCcEEEEEECCCCCCEEEEEe
Confidence 35677788887774444889999999999999999999999999999999999987544678999999655569999999
Q ss_pred ecccccCCCCCCCCccccCCCceecCCchHHHHHHHHHHHHHHhccCCCCceEEEEEEcCCCCcchHHHHHHhCCCCCcc
Q 023049 113 DMDALAMEESVEWEHKSKVPGKMHACGHDAHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEEGGGGAKKMLDAGALENVE 192 (288)
Q Consensus 113 H~DtVP~~~~~~~pf~~~~~G~~~g~G~dg~~a~~l~a~~~L~~~~~~~~g~v~~i~~~dEE~g~Ga~~l~~~g~~~~~d 192 (288)
||||||.++.+.|+|.+..+|++|+||||+++|++++|+++|++.+..++++|.|+|+||||++.|++.|+++|.+++.|
T Consensus 110 h~DaVp~~e~~~~~~~p~~~G~~hacGhkg~~A~~l~Aa~~L~~~~~~~~g~V~~if~pdEE~~~Ga~~~i~~g~~~~~~ 189 (437)
T PLN02693 110 DMDALPIQEAVEWEHKSKIPGKMHACGHDGHVAMLLGAAKILQEHRHHLQGTVVLIFQPAEEGLSGAKKMREEGALKNVE 189 (437)
T ss_pred ecCCCcCCCCCCCCCCCCCCCCEECCcchHHHHHHHHHHHHHHhCcccCCceEEEEEEEcccchhhHHHHHHCCCCCCCC
Confidence 99999998777788888888999999999999999999999998876778999999999999667999999999887778
Q ss_pred eEEEEccCCCCCcceEEeeccccccceeEEEEEEEeccccCCCCCCCCcHHHHHHHHHHHHHHHhhcccCCCCCceEEEE
Q 023049 193 AIFGLHVSSLFPVGTVASRPGPTLAAGGFFEAVINGKGGHAAIPQHTIDPIVAASNVIVSLQHLVSREADPLDSQVVVSL 272 (288)
Q Consensus 193 ~~i~~e~~~~~~~g~v~~~~g~~~~G~~~~~i~v~G~~aHas~P~~g~NAI~~~~~~i~~l~~~~~~~~~~~~~~t~~v~ 272 (288)
++|..|..+..+.|.+..++|..++|..+++|+++|+++|+|.|+.|+|||..++++|.+|+++..++.++..+.++|||
T Consensus 190 ~iig~h~~p~~~~g~~~~~~g~~~~G~~~~~i~v~Gk~aHaa~P~~G~nAI~~aa~~i~~l~~~~~~~~~~~~~~ti~vg 269 (437)
T PLN02693 190 AIFGIHLSPRTPFGKAASRAGSFMAGAGVFEAVITGKGGHAAIPQHTIDPVVAASSIVLSLQQLVSRETDPLDSKVVTVS 269 (437)
T ss_pred EEEEEecCCCCCCeeEEeccCcccccceEEEEEEEcccccCCCCCCCcCHHHHHHHHHHHHHHHhcccCCCCCCcEEEEE
Confidence 88888887766778877777877889999999999999999999999999999999999999987665666677899999
Q ss_pred EEecCCCCCccccc
Q 023049 273 MSDLLYEPHKTDRK 286 (288)
Q Consensus 273 ~I~gG~~~n~~~~~ 286 (288)
.|+||.++|++|+.
T Consensus 270 ~i~GG~~~NvVPd~ 283 (437)
T PLN02693 270 KVNGGNAFNVIPDS 283 (437)
T ss_pred EEEcCCCCceECCe
Confidence 99999999999985
No 2
>COG1473 AbgB Metal-dependent amidase/aminoacylase/carboxypeptidase [General function prediction only]
Probab=100.00 E-value=6.8e-50 Score=375.51 Aligned_cols=246 Identities=46% Similarity=0.723 Sum_probs=229.1
Q ss_pred HHHHHhcCCCcHHHHHHHHHHhHhCCCCCCChHHHHHHHHHHHHhCCCCeEeecC-CceEEEEECCC-CCcEEEEEeecc
Q 023049 38 KFLDFAKKPEIFYWMVNIRRKIHENPELGFQEFETSKLIRAELDQMGIPYKFPVA-VTGVVGYIGTG-QPPFVALRADMD 115 (288)
Q Consensus 38 ~i~~~~~~~~~~~~li~~~~~L~~iPs~s~~E~~~~~~i~~~l~~~G~~~~~~~~-~~nvia~~~~~-~~~~i~l~aH~D 115 (288)
++++++ ..+ +++++++|+||++||++++|.++++||.++|+++|+++....+ +++|+|.++++ ++|+|+|+++||
T Consensus 3 ~~~~~~-~~~--~~l~~~rr~lH~~PEL~f~E~~Ta~~i~~~L~~~g~~~~~~~~~~TGvva~~~~g~~g~tIalRAD~D 79 (392)
T COG1473 3 KILDEI-ELK--DELIEWRRDLHEHPELGFEEYRTAAYIAEKLEELGFEVVEVGGGKTGVVATLKGGKPGPTIALRADMD 79 (392)
T ss_pred hHHHHH-hhh--HHHHHHHHHHhhCCccchhHHHHHHHHHHHHHHcCCeeEeccCCceEEEEEEcCCCCCCEEEEEeecc
Confidence 456666 445 8999999999999999999999999999999999999544443 69999999865 568999999999
Q ss_pred cccCCCCCCCCccccCCCceecCCchHHHHHHHHHHHHHHhccCCCCceEEEEEEcCCCCcchHHHHHHhCCCCC-cceE
Q 023049 116 ALAMEESVEWEHKSKVPGKMHACGHDAHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEEGGGGAKKMLDAGALEN-VEAI 194 (288)
Q Consensus 116 tVP~~~~~~~pf~~~~~G~~~g~G~dg~~a~~l~a~~~L~~~~~~~~g~v~~i~~~dEE~g~Ga~~l~~~g~~~~-~d~~ 194 (288)
++|..|.+..||++..+|+||+||||+|+|++|+++++|++...+++|+|+|+|||.||++.|++.|++.|.+++ +|++
T Consensus 80 ALPi~E~t~~~~~S~~~G~mHACGHD~Hta~lLgaA~~L~~~~~~~~Gtv~~ifQPAEE~~~Ga~~mi~~G~~~~~vD~v 159 (392)
T COG1473 80 ALPIQEETGLPFASKNPGVMHACGHDGHTAILLGAALALAEHKDNLPGTVRLIFQPAEEGGGGAKAMIEDGVFDDFVDAV 159 (392)
T ss_pred cCccccccCCCcccCCCCCcccCCchHHHHHHHHHHHHHHhhhhhCCcEEEEEecccccccccHHHHHhcCCccccccEE
Confidence 999999999999999999999999999999999999999998778999999999999999889999999999999 9999
Q ss_pred EEEccCCCCCcceEEeeccccccceeEEEEEEEeccccCCCCCCCCcHHHHHHHHHHHHHHHhhcccCCCCCceEEEEEE
Q 023049 195 FGLHVSSLFPVGTVASRPGPTLAAGGFFEAVINGKGGHAAIPQHTIDPIVAASNVIVSLQHLVSREADPLDSQVVVSLMS 274 (288)
Q Consensus 195 i~~e~~~~~~~g~v~~~~g~~~~G~~~~~i~v~G~~aHas~P~~g~NAI~~~~~~i~~l~~~~~~~~~~~~~~t~~v~~I 274 (288)
|.+|+.|..|+|++..++|..+++...|+|+++|+++|++.||.++||+.+++.++..|+.+.++..+|..+.++++|++
T Consensus 160 ~g~H~~p~~~~g~v~~~~G~~~aa~d~~~i~~~GkggH~a~Ph~~~d~i~aa~~~v~~lq~ivsr~~~p~~~~vv~vg~~ 239 (392)
T COG1473 160 FGLHPGPGLPVGTVALRPGALMAAADEFEITFKGKGGHAAAPHLGIDALVAAAQLVTALQTIVSRNVDPLDSAVVTVGKI 239 (392)
T ss_pred EEecCCCCCCCceEEeecccceeecceEEEEEEeCCcccCCcccccCHHHHHHHHHHHHHHHHhcccCCccCeEEEEEEe
Confidence 99999886688999999998888999999999999999999999999999999999999999999999988999999999
Q ss_pred ecCCCCCccccc
Q 023049 275 DLLYEPHKTDRK 286 (288)
Q Consensus 275 ~gG~~~n~~~~~ 286 (288)
+||.+.|++|+.
T Consensus 240 ~aG~a~NVIpd~ 251 (392)
T COG1473 240 EAGTAANVIPDS 251 (392)
T ss_pred cCCCcCCcCCCe
Confidence 999999999985
No 3
>PLN02280 IAA-amino acid hydrolase
Probab=100.00 E-value=8e-47 Score=365.41 Aligned_cols=248 Identities=59% Similarity=0.967 Sum_probs=219.7
Q ss_pred HHHHhcCCCcHHHHHHHHHHhHhCCCCCCChHHHHHHHHHHHHhCCCCeEeecCCceEEEEECCCCCcEEEEEeeccccc
Q 023049 39 FLDFAKKPEIFYWMVNIRRKIHENPELGFQEFETSKLIRAELDQMGIPYKFPVAVTGVVGYIGTGQPPFVALRADMDALA 118 (288)
Q Consensus 39 i~~~~~~~~~~~~li~~~~~L~~iPs~s~~E~~~~~~i~~~l~~~G~~~~~~~~~~nvia~~~~~~~~~i~l~aH~DtVP 118 (288)
++-.....+.++++++++|.++++||++++|.++++||.++|+++|+++++...++|++++++++.+|+|+|+|||||||
T Consensus 86 ~~~~~~~~~~~~~l~~l~r~lh~~PEls~~E~~t~~~i~~~L~~~G~~~~~~~~~~~vva~~g~~~~~~I~l~gh~DaVP 165 (478)
T PLN02280 86 VLRLAYQPDTVAWLKSVRRKIHENPELAFEEYKTSELVRSELDRMGIMYRYPLAKTGIRAWIGTGGPPFVAVRADMDALP 165 (478)
T ss_pred HHHhhhhHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHCCCeEEecCCCCEEEEEECCCCCCEEEEEEecCCCc
Confidence 44444444555889999999999999999999999999999999999988755678999999644458999999999999
Q ss_pred CCCCCCCCccccCCCceecCCchHHHHHHHHHHHHHHhccCCCCceEEEEEEcCCCCcchHHHHHHhCCCCCcceEEEEc
Q 023049 119 MEESVEWEHKSKVPGKMHACGHDAHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEEGGGGAKKMLDAGALENVEAIFGLH 198 (288)
Q Consensus 119 ~~~~~~~pf~~~~~G~~~g~G~dg~~a~~l~a~~~L~~~~~~~~g~v~~i~~~dEE~g~Ga~~l~~~g~~~~~d~~i~~e 198 (288)
.++...|+|.+..+|++||||||+++|++++|+++|++.+.+++++|.|+|+||||.+.|+++|++.|.++++|+++++|
T Consensus 166 ~~e~~~w~~~p~~~G~~h~cGhd~~~A~~l~a~~~L~~~~~~~~g~V~~if~pdEE~g~Ga~~li~~g~~~~~d~~~~~h 245 (478)
T PLN02280 166 IQEAVEWEHKSKVAGKMHACGHDAHVAMLLGAAKILKSREHLLKGTVVLLFQPAEEAGNGAKRMIGDGALDDVEAIFAVH 245 (478)
T ss_pred ccCCCCCCCCCCCCCeEEeCCCcHHHHHHHHHHHHHHhccccCCceEEEEecccccccchHHHHHHCCCCcCCCEEEEEe
Confidence 98877799998888999999999999999999999998777789999999999999988999999999888889999999
Q ss_pred cCCCCCcceEEeeccccccceeEEEEEEEeccccCCCCCCCCcHHHHHHHHHHHHHHHhhcccCCCCCceEEEEEEecCC
Q 023049 199 VSSLFPVGTVASRPGPTLAAGGFFEAVINGKGGHAAIPQHTIDPIVAASNVIVSLQHLVSREADPLDSQVVVSLMSDLLY 278 (288)
Q Consensus 199 ~~~~~~~g~v~~~~g~~~~G~~~~~i~v~G~~aHas~P~~g~NAI~~~~~~i~~l~~~~~~~~~~~~~~t~~v~~I~gG~ 278 (288)
+++..|++.+....+...+|..+++|+++|+++|++.|+.|+|||.++++++.+++++..++.++..+.++|++.|+||.
T Consensus 246 ~~~~~p~g~ig~~~~~~~~G~~~~~I~v~Gk~aHas~P~~G~NAI~~aa~li~~l~~l~~r~~~~~~~~tvnvg~I~GG~ 325 (478)
T PLN02280 246 VSHEHPTAVIGSRPGPLLAGCGFFRAVISGKKGRAGSPHHSVDLILAASAAVISLQGIVSREANPLDSQVVSVTTMDGGN 325 (478)
T ss_pred cCCCCCCceeEecccccccceeEEEEEEECcchhcCCcccCcCHHHHHHHHHHHHHHHHhcccCCCCCcEEEEEEEEccC
Confidence 97666777666666666779999999999999999999999999999999999999987665566667899999999999
Q ss_pred CCCccccc
Q 023049 279 EPHKTDRK 286 (288)
Q Consensus 279 ~~n~~~~~ 286 (288)
.+|++|+.
T Consensus 326 ~~NvIPd~ 333 (478)
T PLN02280 326 NLDMIPDT 333 (478)
T ss_pred CCCEeCCE
Confidence 99999985
No 4
>TIGR01891 amidohydrolases amidohydrolase. This model represents a subfamily of amidohydrolases which are a subset of those sequences detected by pfam01546. Included within this group are hydrolases of hippurate (N-benzylglycine), indoleacetic acid (IAA) N-conjugates of amino acids, N-acetyl-L-amino acids and aminobenzoylglutamate. These hydrolases are of the carboxypeptidase-type, most likely utilizing a zinc ion in the active site.
Probab=100.00 E-value=5.6e-43 Score=328.36 Aligned_cols=234 Identities=49% Similarity=0.775 Sum_probs=204.1
Q ss_pred HHHHHHhHhCCCCCCChHHHHHHHHHHHHhCCCCeEe-ecCCceEEEEECCC-CCcEEEEEeecccccCCCCCCCCcccc
Q 023049 53 VNIRRKIHENPELGFQEFETSKLIRAELDQMGIPYKF-PVAVTGVVGYIGTG-QPPFVALRADMDALAMEESVEWEHKSK 130 (288)
Q Consensus 53 i~~~~~L~~iPs~s~~E~~~~~~i~~~l~~~G~~~~~-~~~~~nvia~~~~~-~~~~i~l~aH~DtVP~~~~~~~pf~~~ 130 (288)
.+++++|++|||++++|.++++||.++|+++|+++++ ....+|++++++++ ++|.|+|+|||||||.+++..+||+..
T Consensus 2 ~~~~~~L~~ips~s~~E~~~a~~l~~~l~~~g~~~~~~~~~~~~vva~~~~~~~~~~i~l~gH~DtVp~~~~~~~pf~~~ 81 (363)
T TIGR01891 2 TDIRRHLHEHPELSFEEFKTSSLIAEALESLGIEVRRGVGGATGVVATIGGGKPGPVVALRADMDALPIQEQTDLPYKST 81 (363)
T ss_pred hHHHHHHhcCCCCCCchHHHHHHHHHHHHHcCCceEecCCCCcEEEEEEeCCCCCCEEEEEeccCCCCcccccCCCcccC
Confidence 5789999999999999999999999999999999876 34568999999764 468999999999999877777899987
Q ss_pred CCCceecCCchHHHHHHHHHHHHHHhccCCCCceEEEEEEcCCCCcchHHHHHHhCCCCCcceEEEEccCCCCCcceEEe
Q 023049 131 VPGKMHACGHDAHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEEGGGGAKKMLDAGALENVEAIFGLHVSSLFPVGTVAS 210 (288)
Q Consensus 131 ~~G~~~g~G~dg~~a~~l~a~~~L~~~~~~~~g~v~~i~~~dEE~g~Ga~~l~~~g~~~~~d~~i~~e~~~~~~~g~v~~ 210 (288)
.+|++||||+|+++|++++|++.|++.+..++++|.|+|++|||.+.|++++++.+.++++|++|++||++..+.+.+..
T Consensus 82 ~~g~l~g~G~~~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~~G~~~~~~~~~~~~~d~~i~~e~~~~~~~~~~~~ 161 (363)
T TIGR01891 82 NPGVMHACGHDLHTAILLGTAKLLKKLADLLEGTVRLIFQPAEEGGGGATKMIEDGVLDDVDAILGLHPDPSIPAGTVGL 161 (363)
T ss_pred CCCceecCcCHHHHHHHHHHHHHHHhchhhCCceEEEEEeecCcCcchHHHHHHCCCCCCcCEEEEECCCCCCCCeEEEE
Confidence 77899999999999999999999988766678999999999999988999999988777789999999987556666544
Q ss_pred eccccccceeEEEEEEEeccccCCCCCCCCcHHHHHHHHHHHHHHHhhcccCCCCCceEEEEEEecCCCCCccccc
Q 023049 211 RPGPTLAAGGFFEAVINGKGGHAAIPQHTIDPIVAASNVIVSLQHLVSREADPLDSQVVVSLMSDLLYEPHKTDRK 286 (288)
Q Consensus 211 ~~g~~~~G~~~~~i~v~G~~aHas~P~~g~NAI~~~~~~i~~l~~~~~~~~~~~~~~t~~v~~I~gG~~~n~~~~~ 286 (288)
..+..++|..+++++++|+++|++.|+.|+|||..++++|.+++++.....++....++|+|.|+||.++|++|+.
T Consensus 162 ~~~~~~~g~~~~~i~~~G~~~Has~p~~g~nAi~~~~~~i~~l~~~~~~~~~~~~~~~~~i~~i~gG~~~nvvP~~ 237 (363)
T TIGR01891 162 RPGTIMAAADKFEVTIHGKGAHAARPHLGRDALDAAAQLVVALQQIVSRNVDPSRPAVVTVGIIEAGGAPNVIPDK 237 (363)
T ss_pred CCCcceeecceEEEEEEeecccccCcccccCHHHHHHHHHHHHHHHhhccCCCCCCcEEEEEEEEcCCCCcEECCe
Confidence 4565667889999999999999999999999999999999999987533333444678999999999999999975
No 5
>PRK06915 acetylornithine deacetylase; Validated
Probab=100.00 E-value=2.4e-40 Score=316.23 Aligned_cols=240 Identities=16% Similarity=0.184 Sum_probs=202.1
Q ss_pred hhhHHHHHhcCCCcHHHHHHHHHHhHhCCCCCCChHHHHHHHHHHHHhCCCCeEee--------------------cCCc
Q 023049 35 IPVKFLDFAKKPEIFYWMVNIRRKIHENPELGFQEFETSKLIRAELDQMGIPYKFP--------------------VAVT 94 (288)
Q Consensus 35 ~~~~i~~~~~~~~~~~~li~~~~~L~~iPs~s~~E~~~~~~i~~~l~~~G~~~~~~--------------------~~~~ 94 (288)
.+.+|++++++.+ +++++++++|++|||++++|.++++||+++|+++|+++++. ..++
T Consensus 4 ~~~~~~~~~~~~~--~~~~~~l~~lv~ips~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (422)
T PRK06915 4 LKKQICDYIESHE--EEAVKLLKRLIQEKSVSGDESGAQAIVIEKLRELGLDLDIWEPSFKKLKDHPYFVSPRTSFSDSP 81 (422)
T ss_pred HHHHHHHHHHhhH--HHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHhcCCeeEEeecchhhhhcccccCCcccccCCCc
Confidence 4678999999988 99999999999999999999999999999999999997531 1368
Q ss_pred eEEEEECCC-CCcEEEEEeecccccCCC---CCCCCccccC-CCceecCCc-h--HHHHHHHHHHHHHHhccCCCCceEE
Q 023049 95 GVVGYIGTG-QPPFVALRADMDALAMEE---SVEWEHKSKV-PGKMHACGH-D--AHVAMLLGAAKMLQVFRHEIKGTIV 166 (288)
Q Consensus 95 nvia~~~~~-~~~~i~l~aH~DtVP~~~---~~~~pf~~~~-~G~~~g~G~-d--g~~a~~l~a~~~L~~~~~~~~g~v~ 166 (288)
||++++++. ++|.|+|+|||||||+++ |+.+||++.+ +|++||||+ | |+++++|.|+++|++.+..+.++|.
T Consensus 82 nlia~~~g~~~~~~l~l~~H~Dtvp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kgg~aa~l~a~~~l~~~~~~~~~~v~ 161 (422)
T PRK06915 82 NIVATLKGSGGGKSMILNGHIDVVPEGDVNQWDHHPYSGEVIGGRIYGRGTTDMKGGNVALLLAMEALIESGIELKGDVI 161 (422)
T ss_pred eEEEEEcCCCCCCeEEEEeeccccCCCCcccCcCCCCCceEECCEEEecCcccchHHHHHHHHHHHHHHHcCCCCCCcEE
Confidence 999999753 468999999999999865 4556999875 799999997 5 6777789999999988777889999
Q ss_pred EEEEcCCCCc-chHHHHHHhCCCCCcceEEEEccCCCCCcceEEeeccccccceeEEEEEEEeccccCCCCCCCCcHHHH
Q 023049 167 LVFQPAEEGG-GGAKKMLDAGALENVEAIFGLHVSSLFPVGTVASRPGPTLAAGGFFEAVINGKGGHAAIPQHTIDPIVA 245 (288)
Q Consensus 167 ~i~~~dEE~g-~Ga~~l~~~g~~~~~d~~i~~e~~~~~~~g~v~~~~g~~~~G~~~~~i~v~G~~aHas~P~~g~NAI~~ 245 (288)
|+|++|||.+ .|+..++..++ +.|++|+.||+.. .+.. .++|..+++|+++|+++|+|.|+.|+|||.+
T Consensus 162 ~~~~~dEE~g~~G~~~~~~~~~--~~d~~i~~ep~~~----~i~~----~~~G~~~~~i~v~G~~~H~s~p~~g~nAi~~ 231 (422)
T PRK06915 162 FQSVIEEESGGAGTLAAILRGY--KADGAIIPEPTNM----KFFP----KQQGSMWFRLHVKGKAAHGGTRYEGVSAIEK 231 (422)
T ss_pred EEEecccccCCcchHHHHhcCc--CCCEEEECCCCCc----ccee----ecccEEEEEEEEEeeccccCCCCcCcCHHHH
Confidence 9999999987 58888888774 5799999887641 2222 2468999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcc----cCCC-----CCceEEEEEEecCCCCCccccc
Q 023049 246 ASNVIVSLQHLVSRE----ADPL-----DSQVVVSLMSDLLYEPHKTDRK 286 (288)
Q Consensus 246 ~~~~i~~l~~~~~~~----~~~~-----~~~t~~v~~I~gG~~~n~~~~~ 286 (288)
+++++..|+++.... .++. .+.++|+|.|+||.++|++|+.
T Consensus 232 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~t~~v~~i~gG~~~nvvP~~ 281 (422)
T PRK06915 232 SMFVIDHLRKLEEKRNDRITDPLYKGIPIPIPINIGKIEGGSWPSSVPDS 281 (422)
T ss_pred HHHHHHHHHHHHHHhccccCCCcccCCCCCceEeEEEeeCCCCCCccCcE
Confidence 999999999875321 1121 2458999999999999999974
No 6
>PRK08588 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=100.00 E-value=3.6e-39 Score=303.68 Aligned_cols=228 Identities=20% Similarity=0.208 Sum_probs=194.6
Q ss_pred HHHHHHHHHhHhCCCCCCChHHHHHHHHHHHHhCCCCeEee---cCCceEEEEECCCCCcEEEEEeecccccCCC---CC
Q 023049 50 YWMVNIRRKIHENPELGFQEFETSKLIRAELDQMGIPYKFP---VAVTGVVGYIGTGQPPFVALRADMDALAMEE---SV 123 (288)
Q Consensus 50 ~~li~~~~~L~~iPs~s~~E~~~~~~i~~~l~~~G~~~~~~---~~~~nvia~~~~~~~~~i~l~aH~DtVP~~~---~~ 123 (288)
+++++++++|+++||++++|.++++||.++|+++|++++.. .+++|++++++++ .|+|+|+|||||||+++ |+
T Consensus 2 ~~~~~~l~~Lv~i~s~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~~l~a~~g~~-~~~il~~~H~DtVp~~~~~~w~ 80 (377)
T PRK08588 2 EEKIQILADIVKINSVNDNEIEVANYLQDLFAKHGIESKIVKVNDGRANLVAEIGSG-SPVLALSGHMDVVAAGDVDKWT 80 (377)
T ss_pred hHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHCCCceEEEecCCCCceEEEEeCCC-CceEEEEeeecccCCCCcccCc
Confidence 56899999999999999999999999999999999998653 3468999999654 48999999999999864 45
Q ss_pred CCCcccc-CCCceecCCc-h--HHHHHHHHHHHHHHhccCCCCceEEEEEEcCCCCc-chHHHHHHhCCCCCcceEEEEc
Q 023049 124 EWEHKSK-VPGKMHACGH-D--AHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEEGG-GGAKKMLDAGALENVEAIFGLH 198 (288)
Q Consensus 124 ~~pf~~~-~~G~~~g~G~-d--g~~a~~l~a~~~L~~~~~~~~g~v~~i~~~dEE~g-~Ga~~l~~~g~~~~~d~~i~~e 198 (288)
.+||+.. .+|++||||+ | +++++++.|++.|++.+..++++|.|+|++|||.+ .|+++|++.+.++++|++++.|
T Consensus 81 ~~Pf~~~~~~g~l~GrG~~D~Kgg~aa~l~a~~~l~~~~~~~~~~i~l~~~~dEE~g~~G~~~~~~~~~~~~~d~~i~~e 160 (377)
T PRK08588 81 YDPFELTEKDGKLYGRGATDMKSGLAALVIAMIELKEQGQLLNGTIRLLATAGEEVGELGAKQLTEKGYADDLDALIIGE 160 (377)
T ss_pred CCCCCeEEECCEEEecCcccccchHHHHHHHHHHHHHcCCCCCCcEEEEEEcccccCchhHHHHHhcCccCCCCEEEEec
Confidence 6699865 4789999997 4 78899999999999888788899999999999987 5999999998777789999998
Q ss_pred cCCCCCcceEEeeccccccceeEEEEEEEeccccCCCCCCCCcHHHHHHHHHHHHHHHhhcc---cCCCCCceEEEEEEe
Q 023049 199 VSSLFPVGTVASRPGPTLAAGGFFEAVINGKGGHAAIPQHTIDPIVAASNVIVSLQHLVSRE---ADPLDSQVVVSLMSD 275 (288)
Q Consensus 199 ~~~~~~~g~v~~~~g~~~~G~~~~~i~v~G~~aHas~P~~g~NAI~~~~~~i~~l~~~~~~~---~~~~~~~t~~v~~I~ 275 (288)
|+. ..+.. + .+|..+++|+++|+++|+|.|+.|+|||..+++++..++++..+. .+..+.+++|++.|+
T Consensus 161 p~~----~~i~~--~--~~G~~~~~i~~~G~~~Hss~p~~g~nAi~~~~~~l~~l~~~~~~~~~~~~~~~~~t~~v~~i~ 232 (377)
T PRK08588 161 PSG----HGIVY--A--HKGSMDYKVTSTGKAAHSSMPELGVNAIDPLLEFYNEQKEYFDSIKKHNPYLGGLTHVVTIIN 232 (377)
T ss_pred CCC----ceeEE--E--EEEEEEEEEEEEeechhccCCccccCHHHHHHHHHHHHHHHhhhhcccCccCCCCceeeeEEe
Confidence 853 22322 2 357899999999999999999999999999999999998874321 223457899999999
Q ss_pred cCCCCCccccc
Q 023049 276 LLYEPHKTDRK 286 (288)
Q Consensus 276 gG~~~n~~~~~ 286 (288)
||..+|++|+.
T Consensus 233 gG~~~nvip~~ 243 (377)
T PRK08588 233 GGEQVNSVPDE 243 (377)
T ss_pred CCCcCCcCCCe
Confidence 99999999975
No 7
>PRK13013 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=100.00 E-value=1.8e-38 Score=303.44 Aligned_cols=240 Identities=14% Similarity=0.126 Sum_probs=198.0
Q ss_pred HHHHHhcCCCcHHHHHHHHHHhHhCCCCC--C-ChHHHHHHHHHHHHhCCCCeEeec-----------CCceEEEEECCC
Q 023049 38 KFLDFAKKPEIFYWMVNIRRKIHENPELG--F-QEFETSKLIRAELDQMGIPYKFPV-----------AVTGVVGYIGTG 103 (288)
Q Consensus 38 ~i~~~~~~~~~~~~li~~~~~L~~iPs~s--~-~E~~~~~~i~~~l~~~G~~~~~~~-----------~~~nvia~~~~~ 103 (288)
+|.+++++.+ +++++++++|++|||++ + +|+++++||.++|+++||+++... .++|++++++++
T Consensus 4 ~~~~~~~~~~--~~~~~~l~~Lv~i~S~~~~g~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~nlia~~~g~ 81 (427)
T PRK13013 4 RLFAAIEARR--DDLVALTQDLIRIPTLNPPGRAYREICEFLAARLAPRGFEVELIRAEGAPGDSETYPRWNLVARRQGA 81 (427)
T ss_pred HHHHHHHHhH--HHHHHHHHHHhcCCCcCCCCccHHHHHHHHHHHHHHCCCceEEEecCCCCcccccCCcceEEEEecCC
Confidence 5788888887 99999999999999986 3 568999999999999999987532 146999999654
Q ss_pred -CCcEEEEEeecccccCCC-CCCCCccccC-CCceecCCc---hHHHHHHHHHHHHHHhccCCCCceEEEEEEcCCCCc-
Q 023049 104 -QPPFVALRADMDALAMEE-SVEWEHKSKV-PGKMHACGH---DAHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEEGG- 176 (288)
Q Consensus 104 -~~~~i~l~aH~DtVP~~~-~~~~pf~~~~-~G~~~g~G~---dg~~a~~l~a~~~L~~~~~~~~g~v~~i~~~dEE~g- 176 (288)
++|.|+|+|||||||+++ |+.+||++.+ +|++||+|. |++++++|+|+++|++.+..++++|.|+|++|||.|
T Consensus 82 ~~~~~i~l~gH~DvVp~~~~W~~~Pf~~~~~dg~iyGrGa~D~Kg~~aa~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g~ 161 (427)
T PRK13013 82 RDGDCVHFNSHHDVVEVGHGWTRDPFGGEVKDGRIYGRGACDMKGGLAASIIAAEAFLAVYPDFAGSIEISGTADEESGG 161 (427)
T ss_pred CCCCEEEEEeccccCCCCCCCcCCCCCceEECCEEEeccccccchHHHHHHHHHHHHHHhCCCCCccEEEEEEeccccCC
Confidence 468999999999999864 5778999875 789998885 599999999999999987778899999999999987
Q ss_pred -chHHHHHHhCCCC--CcceEEEEccCCCCCcceEEeeccccccceeEEEEEEEeccccCCCCCCCCcHHHHHHHHHHHH
Q 023049 177 -GGAKKMLDAGALE--NVEAIFGLHVSSLFPVGTVASRPGPTLAAGGFFEAVINGKGGHAAIPQHTIDPIVAASNVIVSL 253 (288)
Q Consensus 177 -~Ga~~l~~~g~~~--~~d~~i~~e~~~~~~~g~v~~~~g~~~~G~~~~~i~v~G~~aHas~P~~g~NAI~~~~~~i~~l 253 (288)
+|.++|++.+.++ ++|++|+.||+.. ..+.. + ++|..+++++++|+++|++.|+.|+|||..++++|.+|
T Consensus 162 ~~g~~~l~~~~~~~~~~~d~~i~~ep~~~---~~i~~--~--~~G~~~~~i~v~G~~~H~~~p~~g~nai~~~~~~l~~l 234 (427)
T PRK13013 162 FGGVAYLAEQGRFSPDRVQHVIIPEPLNK---DRICL--G--HRGVWWAEVETRGRIAHGSMPFLGDSAIRHMGAVLAEI 234 (427)
T ss_pred hhHHHHHHhcCCccccCCCEEEEecCCCC---CceEE--e--eeeEEEEEEEEEccccccCCCCcCcCHHHHHHHHHHHH
Confidence 4888899888765 5699999988641 22332 2 35889999999999999999999999999999999999
Q ss_pred HHHhhc----c-c-CC-----CCCceEEEEEEecCCCC----------Cccccc
Q 023049 254 QHLVSR----E-A-DP-----LDSQVVVSLMSDLLYEP----------HKTDRK 286 (288)
Q Consensus 254 ~~~~~~----~-~-~~-----~~~~t~~v~~I~gG~~~----------n~~~~~ 286 (288)
+++..+ . . .+ ....++|++.|+||..+ |++|+.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~t~~v~~i~gG~~~~~~~~~~~~~n~IPd~ 288 (427)
T PRK13013 235 EERLFPLLATRRTAMPVVPEGARQSTLNINSIHGGEPEQDPDYTGLPAPCVADR 288 (427)
T ss_pred HHHhhhhhhcccccCCCCCcccCCCceeeeEEeCCCccccccccccccccCCce
Confidence 875311 0 0 01 13578999999999877 888874
No 8
>PRK13004 peptidase; Reviewed
Probab=100.00 E-value=2.6e-37 Score=293.51 Aligned_cols=239 Identities=16% Similarity=0.145 Sum_probs=200.7
Q ss_pred hhHHHHHhcCCCcHHHHHHHHHHhHhCCCCCCChHHHHHHHHHHHHhCCCCeEeecCCceEEEEECCCCCcEEEEEeecc
Q 023049 36 PVKFLDFAKKPEIFYWMVNIRRKIHENPELGFQEFETSKLIRAELDQMGIPYKFPVAVTGVVGYIGTGQPPFVALRADMD 115 (288)
Q Consensus 36 ~~~i~~~~~~~~~~~~li~~~~~L~~iPs~s~~E~~~~~~i~~~l~~~G~~~~~~~~~~nvia~~~~~~~~~i~l~aH~D 115 (288)
.+++.+++++++ +++++++++|+++||++++|.+++++|.++|+++||++...+.++|+++++++++ |+|+|++|||
T Consensus 3 ~~~~~~~~~~~~--~~~~~~l~~lv~ips~s~~e~~~a~~l~~~l~~~G~~~~~~~~~~n~~a~~~~~~-~~i~~~~H~D 79 (399)
T PRK13004 3 FKLILMLAEKYK--ADMTRFLRDLIRIPSESGDEKRVVKRIKEEMEKVGFDKVEIDPMGNVLGYIGHGK-KLIAFDAHID 79 (399)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHcCCcEEEEcCCCeEEEEECCCC-cEEEEEeccC
Confidence 367999999988 9999999999999999999999999999999999998654444679999997653 8999999999
Q ss_pred cccCCC---CCCCCccccC-CCceecCCc-h--HHHHHHHHHHHHHHhccCCCCceEEEEEEcCCCCc--chHHHHHHhC
Q 023049 116 ALAMEE---SVEWEHKSKV-PGKMHACGH-D--AHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEEGG--GGAKKMLDAG 186 (288)
Q Consensus 116 tVP~~~---~~~~pf~~~~-~G~~~g~G~-d--g~~a~~l~a~~~L~~~~~~~~g~v~~i~~~dEE~g--~Ga~~l~~~g 186 (288)
|||.++ |+.+||+..+ +|++||||+ | ++++++|+|+++|++.+..++++|.|+|++|||.+ .|++++++.+
T Consensus 80 tVp~~~~~~w~~~P~~~~~~~g~lyGrG~~D~Kg~~aa~l~a~~~l~~~~~~~~~~i~~~~~~~EE~~~g~~~~~~~~~~ 159 (399)
T PRK13004 80 TVGIGDIKNWDFDPFEGEEDDGRIYGRGTSDQKGGMASMVYAAKIIKDLGLDDEYTLYVTGTVQEEDCDGLCWRYIIEED 159 (399)
T ss_pred ccCCCChhhcccCCCccEEECCEEEeCCccccchHHHHHHHHHHHHHhcCCCCCCeEEEEEEcccccCcchhHHHHHHhc
Confidence 999864 4567898664 689999997 4 89999999999999988778999999999999974 4678888875
Q ss_pred CCCCcceEEEEccCCCCCcceEEeeccccccceeEEEEEEEeccccCCCCCCCCcHHHHHHHHHHHHHHHhhc--ccCCC
Q 023049 187 ALENVEAIFGLHVSSLFPVGTVASRPGPTLAAGGFFEAVINGKGGHAAIPQHTIDPIVAASNVIVSLQHLVSR--EADPL 264 (288)
Q Consensus 187 ~~~~~d~~i~~e~~~~~~~g~v~~~~g~~~~G~~~~~i~v~G~~aHas~P~~g~NAI~~~~~~i~~l~~~~~~--~~~~~ 264 (288)
.+ ++|++|+.||+. ..+.. + .+|..+++|+++|+++|++.|+.|+|||..++++|.+|+.+... .....
T Consensus 160 ~~-~~d~~i~~e~~~----~~i~~--~--~~G~~~~~v~v~G~~~Ha~~p~~g~nAi~~~~~~i~~l~~~~~~~~~~~~~ 230 (399)
T PRK13004 160 KI-KPDFVVITEPTD----LNIYR--G--QRGRMEIRVETKGVSCHGSAPERGDNAIYKMAPILNELEELNPNLKEDPFL 230 (399)
T ss_pred CC-CCCEEEEccCCC----CceEE--e--cceEEEEEEEEeccccccCCCCCCCCHHHHHHHHHHHHHhhccccccCCcC
Confidence 44 479999999863 23332 2 35889999999999999999999999999999999999987533 22234
Q ss_pred CCceEEEEEEecC-CCCCccccc
Q 023049 265 DSQVVVSLMSDLL-YEPHKTDRK 286 (288)
Q Consensus 265 ~~~t~~v~~I~gG-~~~n~~~~~ 286 (288)
+..++|++.|.+| .++|++|+.
T Consensus 231 ~~~~~~v~~i~~g~~~~nvvP~~ 253 (399)
T PRK13004 231 GKGTLTVSDIFSTSPSRCAVPDS 253 (399)
T ss_pred CCceEEEeeeecCCCCCCccCCE
Confidence 5578999999977 589999974
No 9
>PRK06837 acetylornithine deacetylase; Provisional
Probab=100.00 E-value=3.5e-37 Score=295.09 Aligned_cols=240 Identities=15% Similarity=0.055 Sum_probs=201.8
Q ss_pred hhhHHHHHhcCCCcHHHHHHHHHHhHhCCCCCCChHHHHHHHHHHHHhCCCCeEee--------------------cCCc
Q 023049 35 IPVKFLDFAKKPEIFYWMVNIRRKIHENPELGFQEFETSKLIRAELDQMGIPYKFP--------------------VAVT 94 (288)
Q Consensus 35 ~~~~i~~~~~~~~~~~~li~~~~~L~~iPs~s~~E~~~~~~i~~~l~~~G~~~~~~--------------------~~~~ 94 (288)
.++++.+++++.. +++++++++|++|||++++|.++++||+++|+++|++++.. .+++
T Consensus 7 ~~~~~~~~i~~~~--~~~~~~l~~li~ipS~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (427)
T PRK06837 7 LTQRILAAVDAGF--DAQVAFTQDLVRFPSTRGAEAPCQDFLARAFRERGYEVDRWSIDPDDLKSHPGAGPVEIDYSGAP 84 (427)
T ss_pred HHHHHHHHHHhhh--HHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHCCCceEEecCCHHHhhhcccccccccccCCCc
Confidence 5778999999988 99999999999999999999999999999999999987541 2468
Q ss_pred eEEEEECCC--CCcEEEEEeecccccCC---CCCCCCccccC-CCceecCCc-h--HHHHHHHHHHHHHHhccCCCCceE
Q 023049 95 GVVGYIGTG--QPPFVALRADMDALAME---ESVEWEHKSKV-PGKMHACGH-D--AHVAMLLGAAKMLQVFRHEIKGTI 165 (288)
Q Consensus 95 nvia~~~~~--~~~~i~l~aH~DtVP~~---~~~~~pf~~~~-~G~~~g~G~-d--g~~a~~l~a~~~L~~~~~~~~g~v 165 (288)
||++++++. ++|+|+|+|||||||++ .|+.+||++.+ +|++||||+ | |+++++|.|+++|++.+..++++|
T Consensus 85 nl~a~~~g~~~~~~~il~~gH~DvVp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kgg~~a~l~a~~~l~~~~~~~~~~i 164 (427)
T PRK06837 85 NVVGTYRPAGKTGRSLILQGHIDVVPEGPLDLWSRPPFDPVIVDGWMYGRGAADMKAGLAAMLFALDALRAAGLAPAARV 164 (427)
T ss_pred eEEEEecCCCCCCCeEEEEeecccCCCCCccccccCCCCcEEECCEEEecCcccchHHHHHHHHHHHHHHHcCCCCCCcE
Confidence 999999753 36899999999999986 36788999875 689999997 4 788888999999998887788999
Q ss_pred EEEEEcCCCCc-chHHHHHHhCCCCCcceEEEEccCCCCCcceEEeeccccccceeEEEEEEEeccccCCCCCCCCcHHH
Q 023049 166 VLVFQPAEEGG-GGAKKMLDAGALENVEAIFGLHVSSLFPVGTVASRPGPTLAAGGFFEAVINGKGGHAAIPQHTIDPIV 244 (288)
Q Consensus 166 ~~i~~~dEE~g-~Ga~~l~~~g~~~~~d~~i~~e~~~~~~~g~v~~~~g~~~~G~~~~~i~v~G~~aHas~P~~g~NAI~ 244 (288)
.|+|++|||.+ .|+..++..++ ..|++|+.||+.. .+.. + .+|..+++++++|+++|++.|+.|+|||.
T Consensus 165 ~~~~~~dEE~~g~g~~~~~~~~~--~~d~~iv~ep~~~----~i~~--~--~~G~~~~~i~v~G~~~Hs~~p~~g~nAi~ 234 (427)
T PRK06837 165 HFQSVIEEESTGNGALSTLQRGY--RADACLIPEPTGE----KLVR--A--QVGVIWFRLRVRGAPVHVREAGTGANAID 234 (427)
T ss_pred EEEEEeccccCCHhHHHHHhcCc--CCCEEEEcCCCCC----cccc--c--cceeEEEEEEEEeeccccCCcccCcCHHH
Confidence 99999999976 58888887774 4799999887631 2222 2 35899999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcc-----cC-----CCCCceEEEEEEecCCCCCccccc
Q 023049 245 AASNVIVSLQHLVSRE-----AD-----PLDSQVVVSLMSDLLYEPHKTDRK 286 (288)
Q Consensus 245 ~~~~~i~~l~~~~~~~-----~~-----~~~~~t~~v~~I~gG~~~n~~~~~ 286 (288)
.++++|.+|+.+.... .. ...+.++|++.|+||.+.|++|+.
T Consensus 235 ~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~t~ni~~i~gG~~~nvVP~~ 286 (427)
T PRK06837 235 AAYHLIQALRELEAEWNARKASDPHFEDVPHPINFNVGIIKGGDWASSVPAW 286 (427)
T ss_pred HHHHHHHHHHHHHHHHhhcccCCCcccCCCCceeEeeeeEeCCCCCCccCCE
Confidence 9999999998764211 11 123468999999999999999974
No 10
>PRK06133 glutamate carboxypeptidase; Reviewed
Probab=100.00 E-value=6.4e-37 Score=291.95 Aligned_cols=236 Identities=17% Similarity=0.190 Sum_probs=198.3
Q ss_pred hHHHHHhcCCCcHHHHHHHHHHhHhCCCCCCChH---HHHHHHHHHHHhCCCCeEeec----CCceEEEEECCCCCcEEE
Q 023049 37 VKFLDFAKKPEIFYWMVNIRRKIHENPELGFQEF---ETSKLIRAELDQMGIPYKFPV----AVTGVVGYIGTGQPPFVA 109 (288)
Q Consensus 37 ~~i~~~~~~~~~~~~li~~~~~L~~iPs~s~~E~---~~~~~i~~~l~~~G~~~~~~~----~~~nvia~~~~~~~~~i~ 109 (288)
+++.+++++++ +++++++++|++|||.+++|. ++++||.++|+++|++++... .++||++++++.++|+|+
T Consensus 26 ~~~~~~~~~~~--~~~~~~l~~lv~i~S~s~~~~~~~~~~~~l~~~L~~~G~~v~~~~~~~~~~~~lia~~~g~~~~~il 103 (410)
T PRK06133 26 AELLAAAQQEQ--PAYLDTLKELVSIESGSGDAEGLKQVAALLAERLKALGAKVERAPTPPSAGDMVVATFKGTGKRRIM 103 (410)
T ss_pred HHHHHHHHHhH--HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCCCeEEEEECCCCCceEE
Confidence 35999999888 999999999999999998764 899999999999999987632 357999999764468999
Q ss_pred EEeecccccCCC-CCCCCccccCCCceecCCc-h--HHHHHHHHHHHHHHhccCCCCceEEEEEEcCCCCc-chHHHHHH
Q 023049 110 LRADMDALAMEE-SVEWEHKSKVPGKMHACGH-D--AHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEEGG-GGAKKMLD 184 (288)
Q Consensus 110 l~aH~DtVP~~~-~~~~pf~~~~~G~~~g~G~-d--g~~a~~l~a~~~L~~~~~~~~g~v~~i~~~dEE~g-~Ga~~l~~ 184 (288)
|+|||||||.++ |+..||. ..+|++||+|. | ++++++|+|+++|++.+..++++|.|+|++|||.+ .|++.+++
T Consensus 104 l~~H~D~Vp~~~~w~~~Pf~-~~~~~iyGrG~~D~kgg~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~g~~G~~~~~~ 182 (410)
T PRK06133 104 LIAHMDTVYLPGMLAKQPFR-IDGDRAYGPGIADDKGGVAVILHALKILQQLGFKDYGTLTVLFNPDEETGSPGSRELIA 182 (410)
T ss_pred EEeecCccCCCCccCCCCEE-EECCEEECCccccchHHHHHHHHHHHHHHHcCCCCCCCEEEEEECCcccCCccHHHHHH
Confidence 999999999754 6778997 45689999994 3 89999999999999887777899999999999987 59999998
Q ss_pred hCCCCCcceEEEEccCCCCCcceEEeeccccccceeEEEEEEEeccccCC-CCCCCCcHHHHHHHHHHHHHHHhhcccCC
Q 023049 185 AGALENVEAIFGLHVSSLFPVGTVASRPGPTLAAGGFFEAVINGKGGHAA-IPQHTIDPIVAASNVIVSLQHLVSREADP 263 (288)
Q Consensus 185 ~g~~~~~d~~i~~e~~~~~~~g~v~~~~g~~~~G~~~~~i~v~G~~aHas-~P~~g~NAI~~~~~~i~~l~~~~~~~~~~ 263 (288)
... .+.|++|++||+.. .+.+.. + .+|..+++++++|+++|++ .|+.|+|||..+++++..|+++. ++
T Consensus 183 ~~~-~~~d~~i~~ep~~~--~~~v~~--~--~~G~~~~~v~v~G~~~Hsg~~p~~g~nAi~~~~~~i~~l~~~~----~~ 251 (410)
T PRK06133 183 ELA-AQHDVVFSCEPGRA--KDALTL--A--TSGIATALLEVKGKASHAGAAPELGRNALYELAHQLLQLRDLG----DP 251 (410)
T ss_pred HHh-ccCCEEEEeCCCCC--CCCEEE--e--ccceEEEEEEEEeeccccCCCcccCcCHHHHHHHHHHHHHhcc----CC
Confidence 743 35799999998642 234443 2 3588999999999999986 89999999999999999998763 22
Q ss_pred CCCceEEEEEEecCCCCCccccc
Q 023049 264 LDSQVVVSLMSDLLYEPHKTDRK 286 (288)
Q Consensus 264 ~~~~t~~v~~I~gG~~~n~~~~~ 286 (288)
....++|++.|+||.++|++|+.
T Consensus 252 ~~~~t~~~~~i~gG~~~nvIP~~ 274 (410)
T PRK06133 252 AKGTTLNWTVAKAGTNRNVIPAS 274 (410)
T ss_pred CCCeEEEeeEEECCCCCceeCCc
Confidence 34578999999999999999985
No 11
>TIGR03320 ygeY M20/DapE family protein YgeY. Members of this protein family, including the YgeY protein of Escherichia coli, typically are found in extended genomic regions associated with purine catabolism. Homologs include peptidases and deacylases of the M20/M25 /M40 and DapE/ArgE families. The function is unknown.
Probab=100.00 E-value=1.2e-36 Score=288.46 Aligned_cols=238 Identities=16% Similarity=0.178 Sum_probs=195.6
Q ss_pred hHHHHHhcCCCcHHHHHHHHHHhHhCCCCCCChHHHHHHHHHHHHhCCCCeEeecCCceEEEEECCCCCcEEEEEeeccc
Q 023049 37 VKFLDFAKKPEIFYWMVNIRRKIHENPELGFQEFETSKLIRAELDQMGIPYKFPVAVTGVVGYIGTGQPPFVALRADMDA 116 (288)
Q Consensus 37 ~~i~~~~~~~~~~~~li~~~~~L~~iPs~s~~E~~~~~~i~~~l~~~G~~~~~~~~~~nvia~~~~~~~~~i~l~aH~Dt 116 (288)
+++.+++++.+ +++++++++|+++||++++|.++++||.++|+++|+++.....+.|++++++.+ +|.|+|+|||||
T Consensus 2 ~~~~~~i~~~~--~~~~~~~~~lv~i~s~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~n~~~~~g~~-~~~l~l~~H~Dt 78 (395)
T TIGR03320 2 NQIKSEAKKYR--GDMIRFLRDLVAIPSESGDEKRVAERIKEEMEKLGFDKVEIDPMGNVLGYIGHG-PKLIAMDAHIDT 78 (395)
T ss_pred chHHHHHHHHH--HHHHHHHHHHHcCCCCCCchHHHHHHHHHHHHHhCCcEEEECCCCCEEEEeCCC-CcEEEEEecccc
Confidence 35778888877 899999999999999999999999999999999999854333457999998533 488999999999
Q ss_pred ccCCC---CCCCCccccC-CCceecCCc---hHHHHHHHHHHHHHHhccCCCCceEEEEEEcCCCCcch--HHHHHHhCC
Q 023049 117 LAMEE---SVEWEHKSKV-PGKMHACGH---DAHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEEGGGG--AKKMLDAGA 187 (288)
Q Consensus 117 VP~~~---~~~~pf~~~~-~G~~~g~G~---dg~~a~~l~a~~~L~~~~~~~~g~v~~i~~~dEE~g~G--a~~l~~~g~ 187 (288)
||+++ |+.+||++.+ +|++||||+ ++++|+++.|+++|++.+..++++|.|++++|||.++| .+.+++...
T Consensus 79 Vp~~~~~~w~~~Pf~~~~~~g~lyGrG~~D~Kg~~aa~l~A~~~l~~~g~~~~~~i~~~~~~dEE~~~g~~~~~~~~~~~ 158 (395)
T TIGR03320 79 VGIGDSKQWQFDPYEGYEDEEIIYGRGASDQEGGIASMVYAGKIIKDLGLLDDYTLLVTGTVQEEDCDGLCWQYIIEEDG 158 (395)
T ss_pred cCCCCccccccCCCceEEECCEEEecCccCccchHHHHHHHHHHHHHcCCCCCceEEEEecccccccCchHHHHHHHhcC
Confidence 99865 4566998865 689999995 59999999999999988777788999999999997644 456776544
Q ss_pred CCCcceEEEEccCCCCCcceEEeeccccccceeEEEEEEEeccccCCCCCCCCcHHHHHHHHHHHHHHHhhcc-cCC-CC
Q 023049 188 LENVEAIFGLHVSSLFPVGTVASRPGPTLAAGGFFEAVINGKGGHAAIPQHTIDPIVAASNVIVSLQHLVSRE-ADP-LD 265 (288)
Q Consensus 188 ~~~~d~~i~~e~~~~~~~g~v~~~~g~~~~G~~~~~i~v~G~~aHas~P~~g~NAI~~~~~~i~~l~~~~~~~-~~~-~~ 265 (288)
+ .+|++|+.||+. ..+.. | ++|..+++|+++|+++|+|.|+.|.|||..++++|.+|+++.... .++ .+
T Consensus 159 ~-~~d~~iv~ep~~----~~i~~--g--~~G~~~~~v~~~G~~~Hss~p~~g~nAi~~~~~~l~~l~~~~~~~~~~~~~~ 229 (395)
T TIGR03320 159 I-KPEFVVITEPTD----MNIYR--G--QRGRMEIKVTVKGVSCHGSAPERGDNAIYKMAPILKELSQLNANLVEDPFLG 229 (395)
T ss_pred C-CCCEEEEcCCCc----cceEE--e--cceEEEEEEEEeeeccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCcccC
Confidence 4 479999999864 23332 2 358899999999999999999999999999999999999874321 222 34
Q ss_pred CceEEEEEEecCC-CCCccccc
Q 023049 266 SQVVVSLMSDLLY-EPHKTDRK 286 (288)
Q Consensus 266 ~~t~~v~~I~gG~-~~n~~~~~ 286 (288)
..++|+|.|++|. .+|++|+.
T Consensus 230 ~~t~~v~~i~~g~~~~NviP~~ 251 (395)
T TIGR03320 230 KGTLTVSEIFFSSPSRCAVADG 251 (395)
T ss_pred cCceeeeeeecCCCCcCccCCE
Confidence 5799999999886 88999974
No 12
>TIGR03526 selenium_YgeY putative selenium metabolism hydrolase. SelD, selenophosphate synthase, is the selenium donor protein for both selenocysteine and selenouridine biosynthesis systems, but it occurs also in a few prokaryotes that have neither of those pathways. The method of partial phylogenetic profiling, starting from such orphan-selD genomes, identifies this protein as one of those most strongly correlated to SelD occurrence. Its distribution is also well correlated with that of family TIGR03309, a putative accessory protein of labile selenium (non-selenocysteine) enzyme maturation. This family includes the uncharacterized YgeY of Escherichia coli, and belongs to a larger family of metalloenzymes in which some are known peptidases, others enzymes of different types.
Probab=100.00 E-value=1.9e-36 Score=287.27 Aligned_cols=237 Identities=16% Similarity=0.152 Sum_probs=195.7
Q ss_pred HHHHHhcCCCcHHHHHHHHHHhHhCCCCCCChHHHHHHHHHHHHhCCCCeEeecCCceEEEEECCCCCcEEEEEeecccc
Q 023049 38 KFLDFAKKPEIFYWMVNIRRKIHENPELGFQEFETSKLIRAELDQMGIPYKFPVAVTGVVGYIGTGQPPFVALRADMDAL 117 (288)
Q Consensus 38 ~i~~~~~~~~~~~~li~~~~~L~~iPs~s~~E~~~~~~i~~~l~~~G~~~~~~~~~~nvia~~~~~~~~~i~l~aH~DtV 117 (288)
+|.+++++++ +++++++++|++|||++++|.++++||.++|+++||++.......|+++.++++ .|+|+|+||||||
T Consensus 3 ~~~~~~~~~~--~~~~~~l~~Lv~ips~s~~e~~~~~~l~~~l~~~g~~~~~~~~~~~v~~~~g~~-~~~l~l~~H~DtV 79 (395)
T TIGR03526 3 QIKSEAEKYR--GDMIRFLRDLVAIPSESGDEGRVALRIKQEMEKLGFDKVEIDPMGNVLGYIGHG-PKLIAMDAHIDTV 79 (395)
T ss_pred hHHHHHHHHH--HHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHcCCceEEEcCCCcEEEEeCCC-CCEEEEEeecccc
Confidence 4778888887 899999999999999999999999999999999999854333456999998543 4789999999999
Q ss_pred cCCC---CCCCCccccC-CCceecCCc---hHHHHHHHHHHHHHHhccCCCCceEEEEEEcCCCCc--chHHHHHHhCCC
Q 023049 118 AMEE---SVEWEHKSKV-PGKMHACGH---DAHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEEGG--GGAKKMLDAGAL 188 (288)
Q Consensus 118 P~~~---~~~~pf~~~~-~G~~~g~G~---dg~~a~~l~a~~~L~~~~~~~~g~v~~i~~~dEE~g--~Ga~~l~~~g~~ 188 (288)
|+++ |+.+||++.+ +|++||||+ +|+++++|+|++.|++.+..+++++.|++++|||.+ .|++.+++++.+
T Consensus 80 p~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kg~~aa~l~a~~~l~~~~~~~~~~v~~~~~~dEE~~~g~~~~~~~~~~~~ 159 (395)
T TIGR03526 80 GIGDMDQWQFDPYEGYEDEEIIYGRGASDQEGGIASMVYAGKIIKDLGLLDDYTLLVTGTVQEEDCDGLCWQYIIEEDKI 159 (395)
T ss_pred CCCCcccccCCCCceEEECCEEEecCccccchhHHHHHHHHHHHHHcCCCCCceEEEEEecccccCCcHhHHHHHhccCC
Confidence 9865 4566998765 689999994 699999999999999887667789999999999953 366778876555
Q ss_pred CCcceEEEEccCCCCCcceEEeeccccccceeEEEEEEEeccccCCCCCCCCcHHHHHHHHHHHHHHHhhcc-cCC-CCC
Q 023049 189 ENVEAIFGLHVSSLFPVGTVASRPGPTLAAGGFFEAVINGKGGHAAIPQHTIDPIVAASNVIVSLQHLVSRE-ADP-LDS 266 (288)
Q Consensus 189 ~~~d~~i~~e~~~~~~~g~v~~~~g~~~~G~~~~~i~v~G~~aHas~P~~g~NAI~~~~~~i~~l~~~~~~~-~~~-~~~ 266 (288)
++|++|+.||+. ..+.. | ++|..+++|+++|+++|++.|+.|+|||..+++++.+|+++.... .++ .+.
T Consensus 160 -~~d~~i~~ep~~----~~i~~--g--~~G~~~~~v~v~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~~~~~~~~~~~~~~ 230 (395)
T TIGR03526 160 -KPEFVVITEPTD----MNIYR--G--QRGRMEIKVTVKGVSCHGSAPERGDNAIYKMAPILKELSQLNANLVEDPFLGK 230 (395)
T ss_pred -CCCEEEecCCCC----ceEEE--E--cceEEEEEEEEecCCCccCCCCCCCCHHHHHHHHHHHHHHhhhhhcCCcccCc
Confidence 479999999864 23332 3 358899999999999999999999999999999999999875321 222 345
Q ss_pred ceEEEEEEecCC-CCCccccc
Q 023049 267 QVVVSLMSDLLY-EPHKTDRK 286 (288)
Q Consensus 267 ~t~~v~~I~gG~-~~n~~~~~ 286 (288)
.++|++.|++|. .+|++|+.
T Consensus 231 ~~~~v~~i~~g~~~~nviP~~ 251 (395)
T TIGR03526 231 GTLTVSEIFFSSPSRCAVADG 251 (395)
T ss_pred cceeeeeeecCCCCCCccCCe
Confidence 799999999886 89999975
No 13
>PRK07522 acetylornithine deacetylase; Provisional
Probab=100.00 E-value=2e-36 Score=285.44 Aligned_cols=227 Identities=15% Similarity=0.160 Sum_probs=186.8
Q ss_pred HHHHHHHHHhHhCCCCCCCh-HHHHHHHHHHHHhCCCCeEee----cCCceEEEEECCCCCcEEEEEeecccccCCC--C
Q 023049 50 YWMVNIRRKIHENPELGFQE-FETSKLIRAELDQMGIPYKFP----VAVTGVVGYIGTGQPPFVALRADMDALAMEE--S 122 (288)
Q Consensus 50 ~~li~~~~~L~~iPs~s~~E-~~~~~~i~~~l~~~G~~~~~~----~~~~nvia~~~~~~~~~i~l~aH~DtVP~~~--~ 122 (288)
.++++++++|++|||++++| .++++||.++|+++|+++++. ..++||+++++++.+|+|+|+|||||||+++ |
T Consensus 4 ~~~~~~l~~lv~i~S~s~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~nv~a~~~~~~~~~ill~~H~Dtv~~~~~~W 83 (385)
T PRK07522 4 MSSLDILERLVAFDTVSRDSNLALIEWVRDYLAAHGVESELIPDPEGDKANLFATIGPADRGGIVLSGHTDVVPVDGQAW 83 (385)
T ss_pred hhHHHHHHHHhCCCCcCCCccHHHHHHHHHHHHHcCCeEEEEecCCCCcccEEEEeCCCCCCeEEEEeecccccCCCCCC
Confidence 46899999999999999887 599999999999999998652 2358999999765568999999999999854 5
Q ss_pred CCCCccccC-CCceecCCc---hHHHHHHHHHHHHHHhccCCCCceEEEEEEcCCCCc-chHHHHHHhCC--CCCcceEE
Q 023049 123 VEWEHKSKV-PGKMHACGH---DAHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEEGG-GGAKKMLDAGA--LENVEAIF 195 (288)
Q Consensus 123 ~~~pf~~~~-~G~~~g~G~---dg~~a~~l~a~~~L~~~~~~~~g~v~~i~~~dEE~g-~Ga~~l~~~g~--~~~~d~~i 195 (288)
+.+||++.+ +|++||||. ||++|++++|+++|++. .++++|.|+|++|||.+ .|+++|++... ..++|+++
T Consensus 84 ~~~pf~~~~~~g~i~GrG~~D~Kg~~a~~l~a~~~l~~~--~~~~~i~~~~~~dEE~g~~G~~~l~~~~~~~~~~~d~~i 161 (385)
T PRK07522 84 TSDPFRLTERDGRLYGRGTCDMKGFIAAALAAVPELAAA--PLRRPLHLAFSYDEEVGCLGVPSMIARLPERGVKPAGCI 161 (385)
T ss_pred CCCCCceEEECCEEEeccccccchHHHHHHHHHHHHHhC--CCCCCEEEEEEeccccCCccHHHHHHHhhhcCCCCCEEE
Confidence 678999875 799999995 69999999999999876 46789999999999987 69999987531 12468999
Q ss_pred EEccCCCCCcceEEeeccccccceeEEEEEEEeccccCCCCCCCCcHHHHHHHHHHHHHHHhhcccC--C----C--CCc
Q 023049 196 GLHVSSLFPVGTVASRPGPTLAAGGFFEAVINGKGGHAAIPQHTIDPIVAASNVIVSLQHLVSREAD--P----L--DSQ 267 (288)
Q Consensus 196 ~~e~~~~~~~g~v~~~~g~~~~G~~~~~i~v~G~~aHas~P~~g~NAI~~~~~~i~~l~~~~~~~~~--~----~--~~~ 267 (288)
+.+|+. ..+.. + .+|..+++|+++|+++|++.|+.|+|||..++++|..|+++..+... + + ..+
T Consensus 162 ~~ep~~----~~~~~--~--~~G~~~~~i~v~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~ 233 (385)
T PRK07522 162 VGEPTS----MRPVV--G--HKGKAAYRCTVRGRAAHSSLAPQGVNAIEYAARLIAHLRDLADRLAAPGPFDALFDPPYS 233 (385)
T ss_pred EccCCC----Ceeee--e--ecceEEEEEEEEeeccccCCCccCcCHHHHHHHHHHHHHHHHHHHhhcCCCCcCCCCCcc
Confidence 988753 22332 2 35789999999999999999999999999999999999986432111 1 1 136
Q ss_pred eEEEEEEecCCCCCccccc
Q 023049 268 VVVSLMSDLLYEPHKTDRK 286 (288)
Q Consensus 268 t~~v~~I~gG~~~n~~~~~ 286 (288)
++|++.|+||..+|++|+.
T Consensus 234 t~~i~~i~gG~~~nviP~~ 252 (385)
T PRK07522 234 TLQTGTIQGGTALNIVPAE 252 (385)
T ss_pred eeEEeeeecCccccccCCc
Confidence 8999999999999999975
No 14
>PRK05111 acetylornithine deacetylase; Provisional
Probab=100.00 E-value=4e-36 Score=283.33 Aligned_cols=225 Identities=16% Similarity=0.201 Sum_probs=185.9
Q ss_pred HHHHHHHHHhHhCCCCCCCh-------HHHHHHHHHHHHhCCCCeEeec-----CCceEEEEECCCCCcEEEEEeecccc
Q 023049 50 YWMVNIRRKIHENPELGFQE-------FETSKLIRAELDQMGIPYKFPV-----AVTGVVGYIGTGQPPFVALRADMDAL 117 (288)
Q Consensus 50 ~~li~~~~~L~~iPs~s~~E-------~~~~~~i~~~l~~~G~~~~~~~-----~~~nvia~~~~~~~~~i~l~aH~DtV 117 (288)
+++++++++|++|||++++| .++++||.++|+++|++++... +++|++++++++ .+.|+|+||||||
T Consensus 5 ~~~i~~l~~lv~i~s~s~~e~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~nvia~~g~~-~~~il~~~H~Dvv 83 (383)
T PRK05111 5 PSFIEMYRALIATPSISATDPALDQSNRAVIDLLAGWFEDLGFNVEIQPVPGTRGKFNLLASLGSG-EGGLLLAGHTDTV 83 (383)
T ss_pred hHHHHHHHHHhCcCCcCCCCcccccchHHHHHHHHHHHHHCCCeEEEEecCCCCCCceEEEEeCCC-CCeEEEEeeecee
Confidence 57999999999999999876 5799999999999999876531 467999999543 3689999999999
Q ss_pred cCCC--CCCCCcccc-CCCceecCCc---hHHHHHHHHHHHHHHhccCCCCceEEEEEEcCCCCc-chHHHHHHhCCCCC
Q 023049 118 AMEE--SVEWEHKSK-VPGKMHACGH---DAHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEEGG-GGAKKMLDAGALEN 190 (288)
Q Consensus 118 P~~~--~~~~pf~~~-~~G~~~g~G~---dg~~a~~l~a~~~L~~~~~~~~g~v~~i~~~dEE~g-~Ga~~l~~~g~~~~ 190 (288)
|..+ |+.+||+.. .+|++||||. ||+++++|+|++.|++. .++++|.|+|++|||.+ .|++++++.+.++
T Consensus 84 p~~~~~W~~~Pf~~~~~~g~i~GrG~~D~Kg~~a~~l~a~~~l~~~--~~~~~i~~~~~~~EE~g~~G~~~~~~~~~~~- 160 (383)
T PRK05111 84 PFDEGRWTRDPFTLTEHDGKLYGLGTADMKGFFAFILEALRDIDLT--KLKKPLYILATADEETSMAGARAFAEATAIR- 160 (383)
T ss_pred cCCCCcCcCCCCccEEECCEEEecccccccHHHHHHHHHHHHHhhc--CCCCCeEEEEEeccccCcccHHHHHhcCCCC-
Confidence 9753 677899975 4799999984 69999999999999864 46789999999999987 5999999987654
Q ss_pred cceEEEEccCCCCCcceEEeeccccccceeEEEEEEEeccccCCCCCCCCcHHHHHHHHHHHHHHHhh----cccCC---
Q 023049 191 VEAIFGLHVSSLFPVGTVASRPGPTLAAGGFFEAVINGKGGHAAIPQHTIDPIVAASNVIVSLQHLVS----READP--- 263 (288)
Q Consensus 191 ~d~~i~~e~~~~~~~g~v~~~~g~~~~G~~~~~i~v~G~~aHas~P~~g~NAI~~~~~~i~~l~~~~~----~~~~~--- 263 (288)
.|++|+.||+.. .+.. + ++|..+++|+++|+++|++.|+.|+|||..++++|.+|+.+.. +..++
T Consensus 161 ~d~~i~~ep~~~----~~~~--~--~~G~~~~~i~v~G~~~H~~~p~~g~nai~~~~~~i~~l~~~~~~~~~~~~~~~~~ 232 (383)
T PRK05111 161 PDCAIIGEPTSL----KPVR--A--HKGHMSEAIRITGQSGHSSDPALGVNAIELMHDVIGELLQLRDELQERYHNPAFT 232 (383)
T ss_pred CCEEEEcCCCCC----ceee--c--ccceEEEEEEEEeechhccCCccCcCHHHHHHHHHHHHHHHHHHHhccCCCccCC
Confidence 689999888642 1111 2 3588999999999999999999999999999999999987642 11122
Q ss_pred CCCceEEEEEEecCCCCCccccc
Q 023049 264 LDSQVVVSLMSDLLYEPHKTDRK 286 (288)
Q Consensus 264 ~~~~t~~v~~I~gG~~~n~~~~~ 286 (288)
...+++|++.|+||..+|++|+.
T Consensus 233 ~~~~t~~i~~i~gg~~~NvVP~~ 255 (383)
T PRK05111 233 VPYPTLNLGHIHGGDAPNRICGC 255 (383)
T ss_pred CCCCceeEeeeecCCcCcccCCc
Confidence 13578999999999999999975
No 15
>TIGR01246 dapE_proteo succinyl-diaminopimelate desuccinylase, proteobacterial clade. This model describes a proteobacterial subset of succinyl-diaminopimelate desuccinylases. An experimentally confirmed Gram-positive lineage succinyl-diaminopimelate desuccinylase has been described for Corynebacterium glutamicum, and a neighbor-joining tree shows the seed members, SP:Q59284, and putative archaeal members such as TrEMBL:O58003 in a single clade. However, the archaeal members differ substantially, share a number of motifs with acetylornithine deacetylases rather than succinyl-diaminopimelate desuccinylases, and are not taken as trusted examples of succinyl-diaminopimelate desuccinylases. This model is limited to proteobacterial members for this reason.
Probab=100.00 E-value=3.8e-36 Score=282.46 Aligned_cols=229 Identities=18% Similarity=0.218 Sum_probs=185.7
Q ss_pred HHHHHHhHhCCCCCCChHHHHHHHHHHHHhCCCCeEee--cCCceEEEEECCCCCcEEEEEeecccccCCC---CCCCCc
Q 023049 53 VNIRRKIHENPELGFQEFETSKLIRAELDQMGIPYKFP--VAVTGVVGYIGTGQPPFVALRADMDALAMEE---SVEWEH 127 (288)
Q Consensus 53 i~~~~~L~~iPs~s~~E~~~~~~i~~~l~~~G~~~~~~--~~~~nvia~~~~~~~~~i~l~aH~DtVP~~~---~~~~pf 127 (288)
++++++|++|||++++|.++++||.++|+++||+++.. .+++|++++.++ .+|+|+|+||+||||+++ |+.+||
T Consensus 2 ~~~l~~lv~ips~s~~e~~~~~~i~~~l~~~G~~~~~~~~~~~~~~~~~~g~-~~~~i~~~~H~DtVp~~~~~~W~~~p~ 80 (370)
T TIGR01246 2 TELAKELISRPSVTPNDAGCQDIIAERLEKLGFEIEWMHFGDTKNLWATRGT-GEPVLAFAGHTDVVPAGPEEQWSSPPF 80 (370)
T ss_pred hHHHHHHhcCCCCCcchHHHHHHHHHHHHHCCCEEEEEecCCCceEEEEecC-CCcEEEEEccccccCCCCccccccCCC
Confidence 67899999999999999999999999999999998753 345799998754 468999999999999864 567799
Q ss_pred cccC-CCceecCCc-h--HHHHHHHHHHHHHHhccCCCCceEEEEEEcCCCCc--chHHHHHHhCC--CCCcceEEEEcc
Q 023049 128 KSKV-PGKMHACGH-D--AHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEEGG--GGAKKMLDAGA--LENVEAIFGLHV 199 (288)
Q Consensus 128 ~~~~-~G~~~g~G~-d--g~~a~~l~a~~~L~~~~~~~~g~v~~i~~~dEE~g--~Ga~~l~~~g~--~~~~d~~i~~e~ 199 (288)
++.. +|++||||+ | +++++++.|++.+++.+..++++|.|+|++|||.+ .|++.+++... ...+|++|+.||
T Consensus 81 ~~~~~dg~~yGrG~~D~Kgg~a~~l~a~~~l~~~~~~~~~~v~~~~~~dEE~~~~~G~~~~~~~~~~~~~~~d~~i~~ep 160 (370)
T TIGR01246 81 EPVERDGKLYGRGAADMKGSLAAFIVAAERFVKKNPDHKGSISLLITSDEEGTAIDGTKKVVETLMARDELIDYCIVGEP 160 (370)
T ss_pred CcEEECCEEEecccccchHHHHHHHHHHHHHHHhcCCCCCcEEEEEEeccccCCCcCHHHHHHHHHhcCCCCCEEEEcCC
Confidence 9864 789999997 6 77888888888888877678899999999999986 48988876311 124799999998
Q ss_pred CCCCCcc-eEEeeccccccceeEEEEEEEeccccCCCCCCCCcHHHHHHHHHHHHHHHhhcc-cCCCCCceEEEEEEecC
Q 023049 200 SSLFPVG-TVASRPGPTLAAGGFFEAVINGKGGHAAIPQHTIDPIVAASNVIVSLQHLVSRE-ADPLDSQVVVSLMSDLL 277 (288)
Q Consensus 200 ~~~~~~g-~v~~~~g~~~~G~~~~~i~v~G~~aHas~P~~g~NAI~~~~~~i~~l~~~~~~~-~~~~~~~t~~v~~I~gG 277 (288)
+...+.+ .+.. + .+|..+++++++|+++|++.|+.|+|||..++++|..|+...... .+.+.++++|++.|+||
T Consensus 161 ~~~~~~~~~i~~--~--~~G~~~~~v~v~G~~~H~~~p~~g~nAi~~~~~~i~~l~~~~~~~~~~~~~~~t~~i~~i~~g 236 (370)
T TIGR01246 161 SSVKKLGDVIKN--G--RRGSITGNLTIKGIQGHVAYPHLANNPIHKAAPALAELTAIKWDEGNEFFPPTSLQITNIHAG 236 (370)
T ss_pred CCcccCCceEEE--e--eeEEEEEEEEEEccCcccCCcccCCCHHHHHHHHHHHHhhhhhccCCccCCCCceEeeeeecC
Confidence 6532222 2322 2 257899999999999999999999999999999999998763222 12245679999999999
Q ss_pred C-CCCccccc
Q 023049 278 Y-EPHKTDRK 286 (288)
Q Consensus 278 ~-~~n~~~~~ 286 (288)
. .+|++|+.
T Consensus 237 ~~~~nvvP~~ 246 (370)
T TIGR01246 237 TGANNVIPGE 246 (370)
T ss_pred CCCCcccCCc
Confidence 6 67999874
No 16
>PRK07338 hypothetical protein; Provisional
Probab=100.00 E-value=8.6e-36 Score=283.03 Aligned_cols=235 Identities=17% Similarity=0.129 Sum_probs=194.6
Q ss_pred hhHHHHHhcCCCcHHHHHHHHHHhHhCCCCCCCh---HHHHHHHHHHHHhCCCCeEeec----------C-------Cce
Q 023049 36 PVKFLDFAKKPEIFYWMVNIRRKIHENPELGFQE---FETSKLIRAELDQMGIPYKFPV----------A-------VTG 95 (288)
Q Consensus 36 ~~~i~~~~~~~~~~~~li~~~~~L~~iPs~s~~E---~~~~~~i~~~l~~~G~~~~~~~----------~-------~~n 95 (288)
..++++++++++ +++++.+++|+++||.++++ .++++||.++|+++|++++... + ++|
T Consensus 5 ~~~~~~~~~~~~--~~~~~~l~~lv~i~S~s~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~n 82 (402)
T PRK07338 5 ERAVLDLIDDRQ--APMLEQLIAWAAINSGSRNLDGLARMAELLADAFAALPGEIELIPLPPVEVIDADGRTLEQAHGPA 82 (402)
T ss_pred HHHHHHHHhhhH--HHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHhCCCcEEEecCCccccccccccccccCcCCe
Confidence 446889999888 99999999999999998774 5799999999999999987521 1 259
Q ss_pred EEEEECCCCCcEEEEEeecccccCCCCCCCCcccc---CCCceecCCc---hHHHHHHHHHHHHHHhccCCCCceEEEEE
Q 023049 96 VVGYIGTGQPPFVALRADMDALAMEESVEWEHKSK---VPGKMHACGH---DAHVAMLLGAAKMLQVFRHEIKGTIVLVF 169 (288)
Q Consensus 96 via~~~~~~~~~i~l~aH~DtVP~~~~~~~pf~~~---~~G~~~g~G~---dg~~a~~l~a~~~L~~~~~~~~g~v~~i~ 169 (288)
|+++++++.+++|+|+|||||||++ .+||+.. .+|++||+|. +|+++++|+|+++|++.+..+.++|.|+|
T Consensus 83 l~a~~~~~~~~~lll~gH~DvVp~~---~~Pf~~~~~~~~g~lyGrG~~DmKgg~aa~l~a~~~l~~~~~~~~~~i~~~~ 159 (402)
T PRK07338 83 LHVSVRPEAPRQVLLTGHMDTVFPA---DHPFQTLSWLDDGTLNGPGVADMKGGIVVMLAALLAFERSPLADKLGYDVLI 159 (402)
T ss_pred EEEEECCCCCccEEEEeecCccCCC---CCcccCCeEeeCCEEECCcHHhhhHHHHHHHHHHHHHHhcCCCCCCCEEEEE
Confidence 9999965434679999999999985 3799874 4789999995 48999999999999987767788999999
Q ss_pred EcCCCCc-chHHHHHHhCCCCCcceEEEEccCCCCCcceEEeeccccccceeEEEEEEEeccccCCC-CCCCCcHHHHHH
Q 023049 170 QPAEEGG-GGAKKMLDAGALENVEAIFGLHVSSLFPVGTVASRPGPTLAAGGFFEAVINGKGGHAAI-PQHTIDPIVAAS 247 (288)
Q Consensus 170 ~~dEE~g-~Ga~~l~~~g~~~~~d~~i~~e~~~~~~~g~v~~~~g~~~~G~~~~~i~v~G~~aHas~-P~~g~NAI~~~~ 247 (288)
++|||.| .|++.+++++. .+.++++++||+. +.+.+... .+|..+++++++|+++|++. |+.|+|||..++
T Consensus 160 ~~dEE~g~~g~~~~~~~~~-~~~~~~i~~ep~~--~~~~v~~~----~kG~~~~~v~v~G~~aHs~~~p~~g~nAi~~~~ 232 (402)
T PRK07338 160 NPDEEIGSPASAPLLAELA-RGKHAALTYEPAL--PDGTLAGA----RKGSGNFTIVVTGRAAHAGRAFDEGRNAIVAAA 232 (402)
T ss_pred ECCcccCChhhHHHHHHHh-ccCcEEEEecCCC--CCCcEEee----cceeEEEEEEEEeEcccCCCCcccCccHHHHHH
Confidence 9999987 48899888754 3468899999853 23444331 25789999999999999995 899999999999
Q ss_pred HHHHHHHHHhhcccCCCCCceEEEEEEecCCCCCccccc
Q 023049 248 NVIVSLQHLVSREADPLDSQVVVSLMSDLLYEPHKTDRK 286 (288)
Q Consensus 248 ~~i~~l~~~~~~~~~~~~~~t~~v~~I~gG~~~n~~~~~ 286 (288)
+++.+|+++... ....++|+|.|+||.++|++|+.
T Consensus 233 ~~i~~l~~l~~~----~~~~t~~vg~i~gG~~~nvVP~~ 267 (402)
T PRK07338 233 ELALALHALNGQ----RDGVTVNVAKIDGGGPLNVVPDN 267 (402)
T ss_pred HHHHHHHhhhcc----CCCcEEEEEEEecCCCCceeccc
Confidence 999999887432 23578999999999999999975
No 17
>PRK13009 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=100.00 E-value=6.8e-36 Score=280.90 Aligned_cols=231 Identities=17% Similarity=0.200 Sum_probs=188.9
Q ss_pred HHHHHHHHhHhCCCCCCChHHHHHHHHHHHHhCCCCeEee--cCCceEEEEECCCCCcEEEEEeecccccCCC---CCCC
Q 023049 51 WMVNIRRKIHENPELGFQEFETSKLIRAELDQMGIPYKFP--VAVTGVVGYIGTGQPPFVALRADMDALAMEE---SVEW 125 (288)
Q Consensus 51 ~li~~~~~L~~iPs~s~~E~~~~~~i~~~l~~~G~~~~~~--~~~~nvia~~~~~~~~~i~l~aH~DtVP~~~---~~~~ 125 (288)
++++++++|++|||++++|.++++||.++|+++||+++.. ..++|+++++++ ++|.|+|+|||||||.++ |+.+
T Consensus 3 ~~~~~l~~Lv~ips~s~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~n~~~~~g~-~~~~i~l~~H~D~Vp~g~~~~w~~~ 81 (375)
T PRK13009 3 DVLELAQDLIRRPSVTPDDAGCQDLLAERLEALGFTCERMDFGDVKNLWARRGT-EGPHLCFAGHTDVVPPGDLEAWTSP 81 (375)
T ss_pred hHHHHHHHHhCCCCCCCchhhHHHHHHHHHHHcCCeEEEeccCCCcEEEEEecC-CCCEEEEEeecccCCCCCcccCCCC
Confidence 5789999999999999999999999999999999998753 346799999844 469999999999999864 5667
Q ss_pred CccccC-CCceecCCc-h--HHHHHHHHHHHHHHhccCCCCceEEEEEEcCCCCc--chHHHHHHhCC--CCCcceEEEE
Q 023049 126 EHKSKV-PGKMHACGH-D--AHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEEGG--GGAKKMLDAGA--LENVEAIFGL 197 (288)
Q Consensus 126 pf~~~~-~G~~~g~G~-d--g~~a~~l~a~~~L~~~~~~~~g~v~~i~~~dEE~g--~Ga~~l~~~g~--~~~~d~~i~~ 197 (288)
||+++. +|++||||+ | +++++++.|++.|++.+..++++|+|+|++|||.+ .|++.+++... ...+|++++.
T Consensus 82 Pf~~~~~~g~iyGrG~~D~Kgg~aa~l~a~~~l~~~~~~~~~~i~~~~~~~EE~~~~~G~~~~~~~~~~~~~~~d~~i~~ 161 (375)
T PRK13009 82 PFEPTIRDGMLYGRGAADMKGSLAAFVVAAERFVAAHPDHKGSIAFLITSDEEGPAINGTVKVLEWLKARGEKIDYCIVG 161 (375)
T ss_pred CCCcEEECCEEEecCCccChHHHHHHHHHHHHHHHhcCCCCceEEEEEEeecccccccCHHHHHHHHHHcCcCCCEEEEc
Confidence 999865 789999997 4 78999999999998877778899999999999986 48988876421 1247999999
Q ss_pred ccCCCCCcc-eEEeeccccccceeEEEEEEEeccccCCCCCCCCcHHHHHHHHHHHHHHHhhcc-cCCCCCceEEEEEEe
Q 023049 198 HVSSLFPVG-TVASRPGPTLAAGGFFEAVINGKGGHAAIPQHTIDPIVAASNVIVSLQHLVSRE-ADPLDSQVVVSLMSD 275 (288)
Q Consensus 198 e~~~~~~~g-~v~~~~g~~~~G~~~~~i~v~G~~aHas~P~~g~NAI~~~~~~i~~l~~~~~~~-~~~~~~~t~~v~~I~ 275 (288)
||+.....+ .+.. | .+|..+++|+++|+++|++.|+.|.|||..++++|.+|+.+..++ .+.+.+.++|++.|+
T Consensus 162 ep~~~~~~~~~i~~--g--~~g~~~~~i~v~G~~~Ha~~p~~g~nAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~i~~i~ 237 (375)
T PRK13009 162 EPTSTERLGDVIKN--G--RRGSLTGKLTVKGVQGHVAYPHLADNPIHLAAPALAELAATEWDEGNEFFPPTSLQITNID 237 (375)
T ss_pred CCCcccCCCCeEEE--e--cceEEEEEEEEEecCcccCCCCcccCHHHHHHHHHHHHHhhhccCCCccCCCceEEEEEEe
Confidence 987432222 2222 2 247899999999999999999999999999999999998764322 223456789999999
Q ss_pred cCC-CCCccccc
Q 023049 276 LLY-EPHKTDRK 286 (288)
Q Consensus 276 gG~-~~n~~~~~ 286 (288)
||. ..|++|+.
T Consensus 238 ~G~~~~nvip~~ 249 (375)
T PRK13009 238 AGTGATNVIPGE 249 (375)
T ss_pred cCCCCCcccCCc
Confidence 996 78999875
No 18
>PRK07473 carboxypeptidase; Provisional
Probab=100.00 E-value=1.8e-35 Score=279.15 Aligned_cols=223 Identities=14% Similarity=0.074 Sum_probs=185.9
Q ss_pred HHHHHHHHHhHhCCCCCCChH---HHHHHHHHHHHhCCCCeEeec---C-CceEEEEECCC--CCcEEEEEeecccccC-
Q 023049 50 YWMVNIRRKIHENPELGFQEF---ETSKLIRAELDQMGIPYKFPV---A-VTGVVGYIGTG--QPPFVALRADMDALAM- 119 (288)
Q Consensus 50 ~~li~~~~~L~~iPs~s~~E~---~~~~~i~~~l~~~G~~~~~~~---~-~~nvia~~~~~--~~~~i~l~aH~DtVP~- 119 (288)
+++++++++|++|||++++|. ++++|+.++|+++|++++... + .+|+++++++. .+|+|+|+|||||||+
T Consensus 11 ~~~~~~l~~Lv~i~S~s~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lll~gH~DtV~~~ 90 (376)
T PRK07473 11 EAMLAGLRPWVECESPTWDAAAVNRMLDLAARDMAIMGATIERIPGRQGFGDCVRARFPHPRQGEPGILIAGHMDTVHPV 90 (376)
T ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHcCCeEEEecCCCCCCCeEEEEeCCCCCCCCeEEEEecCCCCCCC
Confidence 789999999999999999986 667799999999999987632 2 24899998642 3689999999999964
Q ss_pred CCCCCCCccccCCCceecCC---chHHHHHHHHHHHHHHhccCCCCceEEEEEEcCCCCc-chHHHHHHhCCCCCcceEE
Q 023049 120 EESVEWEHKSKVPGKMHACG---HDAHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEEGG-GGAKKMLDAGALENVEAIF 195 (288)
Q Consensus 120 ~~~~~~pf~~~~~G~~~g~G---~dg~~a~~l~a~~~L~~~~~~~~g~v~~i~~~dEE~g-~Ga~~l~~~g~~~~~d~~i 195 (288)
+.++.+||+ ..+|++|||| ++++++++|.|+++|++.+..++++|.|+|++|||.| .|++.+++++.. ..|++|
T Consensus 91 ~~~~~~p~~-~~~g~lyGrG~~D~Kgglaa~l~A~~~l~~~~~~~~~~v~~~~~~dEE~g~~g~~~~~~~~~~-~~d~~i 168 (376)
T PRK07473 91 GTLEKLPWR-REGNKCYGPGILDMKGGNYLALEAIRQLARAGITTPLPITVLFTPDEEVGTPSTRDLIEAEAA-RNKYVL 168 (376)
T ss_pred CCccCCCeE-EECCEEEcCchhhchHHHHHHHHHHHHHHHcCCCCCCCEEEEEeCCcccCCccHHHHHHHhhc-cCCEEE
Confidence 556678996 4579999999 4599999999999999887667789999999999988 599999987543 479999
Q ss_pred EEccCCCCCcceEEeeccccccceeEEEEEEEeccccCC-CCCCCCcHHHHHHHHHHHHHHHhhcccCCCCCceEEEEEE
Q 023049 196 GLHVSSLFPVGTVASRPGPTLAAGGFFEAVINGKGGHAA-IPQHTIDPIVAASNVIVSLQHLVSREADPLDSQVVVSLMS 274 (288)
Q Consensus 196 ~~e~~~~~~~g~v~~~~g~~~~G~~~~~i~v~G~~aHas-~P~~g~NAI~~~~~~i~~l~~~~~~~~~~~~~~t~~v~~I 274 (288)
++||+.. .+.+.. + .+|..+++|+++|+++|++ .|+.|+|||..+++++.+|+++.. ...++|+|.|
T Consensus 169 v~ep~~~--~~~v~~--~--~~G~~~~~v~~~G~~aHag~~p~~g~nAi~~~~~~i~~l~~~~~------~~~~~~vg~i 236 (376)
T PRK07473 169 VPEPGRP--DNGVVT--G--RYAIARFNLEATGRPSHAGATLSEGRSAIREMARQILAIDAMTT------EDCTFSVGIV 236 (376)
T ss_pred EeCCCCC--CCCEEE--E--CeeeEEEEEEEEeEcCCCCCCcccCcCHHHHHHHHHHHHHHhcC------CCceEeEeeE
Confidence 9999741 123332 2 3588999999999999987 799999999999999999998742 2468999999
Q ss_pred ecCCCCCccccc
Q 023049 275 DLLYEPHKTDRK 286 (288)
Q Consensus 275 ~gG~~~n~~~~~ 286 (288)
+||.++|++|+.
T Consensus 237 ~gg~~~n~VP~~ 248 (376)
T PRK07473 237 HGGQWVNCVATT 248 (376)
T ss_pred EcCCCCcCCCCc
Confidence 999999999975
No 19
>TIGR01892 AcOrn-deacetyl acetylornithine deacetylase (ArgE). This model represents a clade of acetylornithine deacetylases from proteobacteria. This enzyme is the final step of the "acetylated" ornithine biosynthesis pathway. The enzyme is closely related to dapE, succinyl-diaminopimelate desuccinylase, and outside of this clade annotation is very inaccurate as to which function should be ascribed to genes.
Probab=100.00 E-value=7.4e-36 Score=279.25 Aligned_cols=222 Identities=19% Similarity=0.207 Sum_probs=182.9
Q ss_pred HHHHHhHhCCCCCCCh-HHHHHHHHHHHHhCCCCeEeec-----CCceEEEEECCCCCcEEEEEeecccccCCC--CCCC
Q 023049 54 NIRRKIHENPELGFQE-FETSKLIRAELDQMGIPYKFPV-----AVTGVVGYIGTGQPPFVALRADMDALAMEE--SVEW 125 (288)
Q Consensus 54 ~~~~~L~~iPs~s~~E-~~~~~~i~~~l~~~G~~~~~~~-----~~~nvia~~~~~~~~~i~l~aH~DtVP~~~--~~~~ 125 (288)
+++++|++|||++++| .++++||.++|+++|++++... .++|+++.+++.++|.|+|+|||||||.++ |+.+
T Consensus 1 ~~l~~lv~i~S~s~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~nl~~~~~~~~~~~i~l~~H~Dtvp~~~~~w~~~ 80 (364)
T TIGR01892 1 EILTKLVAFDSTSFRPNVDLIDWAQAYLEALGFSVEVQPFPDGAEKSNLVAVIGPSGAGGLALSGHTDVVPYDDAAWTRD 80 (364)
T ss_pred ChHHHhhCcCCcCCccHHHHHHHHHHHHHHcCCeEEEEeCCCCCccccEEEEecCCCCCeEEEEcccccccCCCCcCCCC
Confidence 4688999999999865 7999999999999999987532 368999999754458999999999999854 5678
Q ss_pred CccccC-CCceecCC---chHHHHHHHHHHHHHHhccCCCCceEEEEEEcCCCCc-chHHHHHHhCCCCCcceEEEEccC
Q 023049 126 EHKSKV-PGKMHACG---HDAHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEEGG-GGAKKMLDAGALENVEAIFGLHVS 200 (288)
Q Consensus 126 pf~~~~-~G~~~g~G---~dg~~a~~l~a~~~L~~~~~~~~g~v~~i~~~dEE~g-~Ga~~l~~~g~~~~~d~~i~~e~~ 200 (288)
||++.+ +|++|||| +|++++++|+|+++|++. .++++|.|+|++|||.+ .|++++++.+.+ +.|++++.+|+
T Consensus 81 Pf~~~~~~~~i~GrG~~D~Kg~~a~~l~a~~~l~~~--~~~~~v~~~~~~~EE~g~~G~~~~~~~~~~-~~d~~i~~ep~ 157 (364)
T TIGR01892 81 PFRLTEKDGRLYGRGTCDMKGFLACALAAAPDLAAE--QLKKPLHLALTADEEVGCTGAPKMIEAGAG-RPRHAIIGEPT 157 (364)
T ss_pred CCcceeeCCEEEecCccccchHHHHHHHHHHHHHhc--CcCCCEEEEEEeccccCCcCHHHHHHhcCC-CCCEEEECCCC
Confidence 999754 68999999 569999999999999875 46789999999999987 699999998754 57899998875
Q ss_pred CCCCcceEEeeccccccceeEEEEEEEeccccCCCCCCCCcHHHHHHHHHHHHHHHhhccc-----CCC--CCceEEEEE
Q 023049 201 SLFPVGTVASRPGPTLAAGGFFEAVINGKGGHAAIPQHTIDPIVAASNVIVSLQHLVSREA-----DPL--DSQVVVSLM 273 (288)
Q Consensus 201 ~~~~~g~v~~~~g~~~~G~~~~~i~v~G~~aHas~P~~g~NAI~~~~~~i~~l~~~~~~~~-----~~~--~~~t~~v~~ 273 (288)
.. .+.. + .+|..+++|+++|+++|++.|+.|+|||..++++|.+|+++..... .+. ..+++|++.
T Consensus 158 ~~----~~~~--~--~~G~~~~~v~v~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~ 229 (364)
T TIGR01892 158 RL----IPVR--A--HKGYASAEVTVRGRSGHSSYPDSGVNAIFRAGRFLQRLVHLADTLLREDLDEGFTPPYTTLNIGV 229 (364)
T ss_pred Cc----eeEE--e--eceEEEEEEEEEcccccccCCccCcCHHHHHHHHHHHHHHHHHHhccCCCCccCCCCCceEEEee
Confidence 42 1111 2 3578999999999999999999999999999999999987642211 111 247999999
Q ss_pred EecCCCCCccccc
Q 023049 274 SDLLYEPHKTDRK 286 (288)
Q Consensus 274 I~gG~~~n~~~~~ 286 (288)
|+||..+|++|+.
T Consensus 230 i~gg~~~nviP~~ 242 (364)
T TIGR01892 230 IQGGKAVNIIPGA 242 (364)
T ss_pred eecCCCCcccCCe
Confidence 9999999999975
No 20
>TIGR01900 dapE-gram_pos succinyl-diaminopimelate desuccinylase. This enzyme is involved in the biosynthesis of lysine, and is related to the enzyme acetylornithine deacetylase and other amidases and peptidases found within pfam01546.
Probab=100.00 E-value=7.5e-36 Score=281.34 Aligned_cols=224 Identities=18% Similarity=0.162 Sum_probs=177.5
Q ss_pred HHHHhHhCCCCCCChHHHHHHHHHHHHhCCCC-eEeecCCceEEEEECCCCCcEEEEEeecccccCCC-----CCCCCc-
Q 023049 55 IRRKIHENPELGFQEFETSKLIRAELDQMGIP-YKFPVAVTGVVGYIGTGQPPFVALRADMDALAMEE-----SVEWEH- 127 (288)
Q Consensus 55 ~~~~L~~iPs~s~~E~~~~~~i~~~l~~~G~~-~~~~~~~~nvia~~~~~~~~~i~l~aH~DtVP~~~-----~~~~pf- 127 (288)
++++|++|||++++|.++++||.++|+++|++ ++....+.||+++++++++|+|+|+|||||||+++ |+.+||
T Consensus 1 ll~~Lv~ipS~s~~e~~~~~~i~~~l~~~g~~~~~~~~~~~nvva~~~~~~~~~l~l~gH~DtVp~~~~~~~~W~~~p~~ 80 (373)
T TIGR01900 1 LLQQIMDIFSPSDHEGPIADEIEAALNNLELEGLEVFRFGDNVLARTDFGKASRVILAGHIDTVPIADNFPPKWLEPGDS 80 (373)
T ss_pred ChHHHhCCCCCCchHHHHHHHHHHHHhhccccCceEEEECCEEEEecCCCCCCeEEEeCccccccCCCCChhhhccCccc
Confidence 47899999999999999999999999999654 22222245999998654468999999999999853 444333
Q ss_pred -------ccc-CCCceecCCc-h--HHHHHHHHHHHHHHh--ccCCCCceEEEEEEcCCCCc---chHHHHHHhCC-CCC
Q 023049 128 -------KSK-VPGKMHACGH-D--AHVAMLLGAAKMLQV--FRHEIKGTIVLVFQPAEEGG---GGAKKMLDAGA-LEN 190 (288)
Q Consensus 128 -------~~~-~~G~~~g~G~-d--g~~a~~l~a~~~L~~--~~~~~~g~v~~i~~~dEE~g---~Ga~~l~~~g~-~~~ 190 (288)
... .+|++||||+ | +++|++|+|++.|++ .+..++++|.|+|++|||.+ .|++.+++... +.+
T Consensus 81 ~~~~~~~~~~~~~g~lyGRGa~DmKgg~aa~l~a~~~l~~~~~~~~~~~~i~~~~~~dEE~~~~~~G~~~~~~~~~~~~~ 160 (373)
T TIGR01900 81 LIREEIAHAHPEDGILWGCGATDMKAGDAVMLHLAATLDGRAPETELKHDLTLIAYDCEEVAAEKNGLGHIRDAHPDWLA 160 (373)
T ss_pred ccccccccccccCCEEEecCchhhhHHHHHHHHHHHHHhhhccccCCCCCEEEEEEecccccCCCCCHHHHHHhCccccc
Confidence 344 4689999997 5 789999999999954 34467899999999999985 39999988642 225
Q ss_pred cceEEEEccCCCCCcceEEeeccccccceeEEEEEEEeccccCCCCCCCCcHHHHHHHHHHHHHHHhhccc--CC-CCCc
Q 023049 191 VEAIFGLHVSSLFPVGTVASRPGPTLAAGGFFEAVINGKGGHAAIPQHTIDPIVAASNVIVSLQHLVSREA--DP-LDSQ 267 (288)
Q Consensus 191 ~d~~i~~e~~~~~~~g~v~~~~g~~~~G~~~~~i~v~G~~aHas~P~~g~NAI~~~~~~i~~l~~~~~~~~--~~-~~~~ 267 (288)
+|++|+.||+. +.+.. | ++|..+++|+++|+++|+|.|+.|.|||..++++|.+|+++..... ++ ....
T Consensus 161 ~d~~iv~Ept~----~~i~~--g--~~G~~~~~i~v~G~~~H~s~p~~g~NAi~~~~~~i~~l~~l~~~~~~~~~~~~~~ 232 (373)
T TIGR01900 161 ADFAIIGEPTG----GGIEA--G--CNGNIRFDVTAHGVAAHSARAWLGDNAIHKAADIINKLAAYEAAEVNIDGLDYRE 232 (373)
T ss_pred CCEEEEECCCC----Ccccc--c--ceeeEEEEEEEEeeccccCCCCCCCCHHHHHHHHHHHHHHhhcccccccCCcccc
Confidence 79999999875 22322 2 3589999999999999999999999999999999999988743221 11 1236
Q ss_pred eEEEEEEecCCCCCccccc
Q 023049 268 VVVSLMSDLLYEPHKTDRK 286 (288)
Q Consensus 268 t~~v~~I~gG~~~n~~~~~ 286 (288)
++|++.|+||.++|++|+.
T Consensus 233 t~~v~~I~GG~~~nvVP~~ 251 (373)
T TIGR01900 233 GLNATFCEGGKANNVIPDE 251 (373)
T ss_pred eEEEEEEeCCCCCcccCCe
Confidence 8999999999999999975
No 21
>TIGR01910 DapE-ArgE acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase. This group of sequences contains annotations for both acetylornithine deacetylase and succinyl-diaminopimelate desuccinylase, but does not contain any members with experimental characterization. Bacillus, Staphylococcus and Sulfolobus species contain multiple hits to this subfamily and each may have a separate activity. Determining which is which must await further laboratory research.
Probab=100.00 E-value=6e-36 Score=281.68 Aligned_cols=226 Identities=18% Similarity=0.170 Sum_probs=186.1
Q ss_pred HHHHHhHhCCC---CCCChHHHHHHHHHHHHhCCCCeEeec---CCc----eEEEEECCC-CCcEEEEEeecccccCCC-
Q 023049 54 NIRRKIHENPE---LGFQEFETSKLIRAELDQMGIPYKFPV---AVT----GVVGYIGTG-QPPFVALRADMDALAMEE- 121 (288)
Q Consensus 54 ~~~~~L~~iPs---~s~~E~~~~~~i~~~l~~~G~~~~~~~---~~~----nvia~~~~~-~~~~i~l~aH~DtVP~~~- 121 (288)
+++++|++||| ++++|.++++||.++|+++|++++... ... |+++.+.+. ++|+|+|.+||||||.++
T Consensus 2 ~~l~~lv~i~s~~~~~~~e~~~a~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ill~~H~DtVp~~~~ 81 (375)
T TIGR01910 2 ELLKDLISIPSVNPPGGNEETIANYIKDLLREFGFSTDVIEITDDRLKVLGKVVVKEPGNGNEKSLIFNGHYDVVPAGDL 81 (375)
T ss_pred hhHHhhhcCCCCCCCCcCHHHHHHHHHHHHHHCCCceEEEecCchhcccccceEEeccCCCCCCEEEEecccccccCCCh
Confidence 67899999999 889999999999999999999986521 222 355555443 468999999999999863
Q ss_pred --CCCCCccccC-CCceecCCc-h--HHHHHHHHHHHHHHhccCCCCceEEEEEEcCCCCc-chHHHHHHhCCCCCcceE
Q 023049 122 --SVEWEHKSKV-PGKMHACGH-D--AHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEEGG-GGAKKMLDAGALENVEAI 194 (288)
Q Consensus 122 --~~~~pf~~~~-~G~~~g~G~-d--g~~a~~l~a~~~L~~~~~~~~g~v~~i~~~dEE~g-~Ga~~l~~~g~~~~~d~~ 194 (288)
|+.+||++.+ +|++||||+ | +++|++|+|++.|++.+..++++|.|+|+++||.+ .|++.+++++.++++|++
T Consensus 82 ~~w~~~Pf~~~~~~g~i~grG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~G~~~~~~~~~~~~~d~~ 161 (375)
T TIGR01910 82 ELWKTDPFKPVEKDGKLYGRGATDMKGGLVALLYALKAIREAGIKPNGNIILQSVVDEESGEAGTLYLLQRGYFKDADGV 161 (375)
T ss_pred hhCcCCCCCcEEECCEEEecCccccchHHHHHHHHHHHHHHcCCCCCccEEEEEEcCcccCchhHHHHHHcCCCCCCCEE
Confidence 5667999864 689999996 3 89999999999999887778999999999999987 599999998877668999
Q ss_pred EEEccCCCCCcceEEeeccccccceeEEEEEEEeccccCCCCCCCCcHHHHHHHHHHHHHHHhhcccC------CCCCce
Q 023049 195 FGLHVSSLFPVGTVASRPGPTLAAGGFFEAVINGKGGHAAIPQHTIDPIVAASNVIVSLQHLVSREAD------PLDSQV 268 (288)
Q Consensus 195 i~~e~~~~~~~g~v~~~~g~~~~G~~~~~i~v~G~~aHas~P~~g~NAI~~~~~~i~~l~~~~~~~~~------~~~~~t 268 (288)
|+.+|+. .+.+.. + .+|..+++|+++|+++|+|.|+.|+|||..++++|.+|+++...... ....++
T Consensus 162 i~~~~~~---~~~v~~--~--~~G~~~~~i~~~G~~~Hs~~p~~g~nAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~t 234 (375)
T TIGR01910 162 LIPEPSG---GDNIVI--G--HKGSIWFKLRVKGKQAHASFPQFGVNAIMKLAKLITELNELEEHIYARNSYGFIPGPIT 234 (375)
T ss_pred EECCCCC---CCceEE--E--ecceEEEEEEEeeeecccCCCCcchhHHHHHHHHHHHHHHHHHHhhhcccccccCCCcc
Confidence 9988753 133332 2 35789999999999999999999999999999999999987432111 124579
Q ss_pred EEEEEEecCCCCCccccc
Q 023049 269 VVSLMSDLLYEPHKTDRK 286 (288)
Q Consensus 269 ~~v~~I~gG~~~n~~~~~ 286 (288)
+|++.|+||...|++|+.
T Consensus 235 ~~i~~i~gG~~~nviP~~ 252 (375)
T TIGR01910 235 FNPGVIKGGDWVNSVPDY 252 (375)
T ss_pred ccceeEECCCCcCcCCCE
Confidence 999999999999999985
No 22
>PRK08596 acetylornithine deacetylase; Validated
Probab=100.00 E-value=1.5e-35 Score=283.30 Aligned_cols=236 Identities=15% Similarity=0.091 Sum_probs=193.1
Q ss_pred HHHHHhcCCCcHHHHHHHHHHhHhCCCCC---CChHHHHHHHHHHHHhCCCCeEee---cCCceEEEEECCC-C--CcEE
Q 023049 38 KFLDFAKKPEIFYWMVNIRRKIHENPELG---FQEFETSKLIRAELDQMGIPYKFP---VAVTGVVGYIGTG-Q--PPFV 108 (288)
Q Consensus 38 ~i~~~~~~~~~~~~li~~~~~L~~iPs~s---~~E~~~~~~i~~~l~~~G~~~~~~---~~~~nvia~~~~~-~--~~~i 108 (288)
+++++++..+ +++++++++|++|||++ ++|.++++||.++|+++||+++.. .+++|+++++++. + +|+|
T Consensus 3 ~~~~~i~~~~--~~~~~~l~~Lv~i~S~s~~~~~e~~~a~~l~~~l~~~G~~~~~~~~~~~~~nvia~~~g~~~~~~~~l 80 (421)
T PRK08596 3 QLLEQIELRK--DELLELLKTLVRFETPAPPARNTNEAQEFIAEFLRKLGFSVDKWDVYPNDPNVVGVKKGTESDAYKSL 80 (421)
T ss_pred HHHHHHHhhH--HHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHCCCeEEEEEccCCCceEEEEecCCCCCCCcEE
Confidence 4677888777 88999999999999998 478899999999999999998763 3578999999653 2 3679
Q ss_pred EEEeecccccCCC---CCCCCccccC-CCceecCCc---hHHHHHHHHHHHHHHhccCCCCceEEEEEEcCCCCc-chHH
Q 023049 109 ALRADMDALAMEE---SVEWEHKSKV-PGKMHACGH---DAHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEEGG-GGAK 180 (288)
Q Consensus 109 ~l~aH~DtVP~~~---~~~~pf~~~~-~G~~~g~G~---dg~~a~~l~a~~~L~~~~~~~~g~v~~i~~~dEE~g-~Ga~ 180 (288)
+|+|||||||+++ |+.+||++.+ +|++||||+ +++++++++|+++|++.+..++++|.|+|++|||.+ .|++
T Consensus 81 ll~~H~DtVp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kgg~a~~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g~~G~~ 160 (421)
T PRK08596 81 IINGHMDVAEVSADEAWETNPFEPTIKDGWLYGRGAADMKGGLAGALFAIQLLHEAGIELPGDLIFQSVIGEEVGEAGTL 160 (421)
T ss_pred EEeccccccCCCCccccccCCCCcEEECCEEEeccccccchHHHHHHHHHHHHHHcCCCCCCcEEEEEEeccccCCcCHH
Confidence 9999999999864 5667999875 789999997 499999999999999988788999999999999987 5999
Q ss_pred HHHHhCCCCCcceEEEEccCCCCCcceEEeeccccccceeEEEEEEEec----------cccCCCCCCCCcHHHHHHHHH
Q 023049 181 KMLDAGALENVEAIFGLHVSSLFPVGTVASRPGPTLAAGGFFEAVINGK----------GGHAAIPQHTIDPIVAASNVI 250 (288)
Q Consensus 181 ~l~~~g~~~~~d~~i~~e~~~~~~~g~v~~~~g~~~~G~~~~~i~v~G~----------~aHas~P~~g~NAI~~~~~~i 250 (288)
++++++. .+|++++.||+... + . | .+|...++++++|+ .+|++.|+.|.|||..++++|
T Consensus 161 ~~~~~~~--~~d~~i~~ep~~~~----~-~--~--~~G~~~~~~~v~g~~~~~~~~~~~~~H~~~p~~G~nai~~~~~~i 229 (421)
T PRK08596 161 QCCERGY--DADFAVVVDTSDLH----M-Q--G--QGGVITGWITVKSPQTFHDGTRRQMIHAGGGLFGASAIEKMMKII 229 (421)
T ss_pred HHHhcCC--CCCEEEECCCCCCc----c-c--c--ccceeeEEEEEEeecccccccccccccccCCccCcCHHHHHHHHH
Confidence 9999874 47999999986421 1 1 2 23556666777765 479999999999999999999
Q ss_pred HHHHHHhhc-----ccC--CCCCceEEEEEEecCCCCCccccc
Q 023049 251 VSLQHLVSR-----EAD--PLDSQVVVSLMSDLLYEPHKTDRK 286 (288)
Q Consensus 251 ~~l~~~~~~-----~~~--~~~~~t~~v~~I~gG~~~n~~~~~ 286 (288)
.+|+++... ..+ +.+..++|++.|+||..+|++|+.
T Consensus 230 ~~l~~~~~~~~~~~~~~~~~~~~~t~~v~~i~gG~~~nvvP~~ 272 (421)
T PRK08596 230 QSLQELERHWAVMKSYPGFPPGTNTINPAVIEGGRHAAFIADE 272 (421)
T ss_pred HHHHHHHHHHhhcccCccCCCCCcceeeeeeeCCCCCCccCce
Confidence 999886321 111 123478999999999999999875
No 23
>TIGR01880 Ac-peptdase-euk N-acyl-L-amino-acid amidohydrolase. This model represents a family of eukaryotic N-acyl-L-amino-acid amidohydrolases active on fatty acid and acetyl amides of L-amino acids.
Probab=100.00 E-value=1.8e-35 Score=280.83 Aligned_cols=234 Identities=15% Similarity=0.073 Sum_probs=186.5
Q ss_pred HHHHHHHHHhHhCCCCCCC--hHHHHHHHHHHHHhCCCCeEee---cCCceEEEEECCC-C-CcEEEEEeecccccCC--
Q 023049 50 YWMVNIRRKIHENPELGFQ--EFETSKLIRAELDQMGIPYKFP---VAVTGVVGYIGTG-Q-PPFVALRADMDALAME-- 120 (288)
Q Consensus 50 ~~li~~~~~L~~iPs~s~~--E~~~~~~i~~~l~~~G~~~~~~---~~~~nvia~~~~~-~-~~~i~l~aH~DtVP~~-- 120 (288)
+++++++++|++|||+++. |.++++||.++|+++|++++.. .+++|++++++++ + .|+|+|+|||||||.+
T Consensus 9 ~~~~~~l~~lv~ipS~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~g~~~l~~~~~g~~~~~~~i~l~~H~DvVp~~~~ 88 (400)
T TIGR01880 9 DIAVTRFREYLRINTVQPNPDYAACVDFLIKQADELGLARKTIEFVPGKPVVVLTWPGSNPELPSILLNSHTDVVPVFRE 88 (400)
T ss_pred HHHHHHHHHHhccCccCCCccHHHHHHHHHHHHHhCCCceeEEEecCCceeEEEEEecCCCCCCeEEEEcccccCCCCcc
Confidence 7789999999999999764 7899999999999999997642 2578999999653 3 3899999999999985
Q ss_pred CCCCCCccccC--CCceecCCc-h--HHHHHHHHHHHHHHhccCCCCceEEEEEEcCCCCc--chHHHHHHhCCCCCcce
Q 023049 121 ESVEWEHKSKV--PGKMHACGH-D--AHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEEGG--GGAKKMLDAGALENVEA 193 (288)
Q Consensus 121 ~~~~~pf~~~~--~G~~~g~G~-d--g~~a~~l~a~~~L~~~~~~~~g~v~~i~~~dEE~g--~Ga~~l~~~g~~~~~d~ 193 (288)
.|+.+||++.+ +|++||||+ | ++++++|.|++.|++.+..++++|.|+|++|||.+ .|++++++.+.+.+.|.
T Consensus 89 ~W~~~Pf~~~~~~dg~iyGrG~~D~K~~~aa~l~a~~~l~~~~~~~~~~v~l~~~~dEE~g~~~G~~~~~~~~~~~~~~~ 168 (400)
T TIGR01880 89 HWTHPPFSAFKDEDGNIYARGAQDMKCVGVQYLEAVRNLKASGFKFKRTIHISFVPDEEIGGHDGMEKFAKTDEFKALNL 168 (400)
T ss_pred cCccCCccceecCCCeEEEcccccccHHHHHHHHHHHHHHHcCCCCCceEEEEEeCCcccCcHhHHHHHHHhhhccCCce
Confidence 36788999854 789999998 5 78889999999999988778999999999999987 39999998876656677
Q ss_pred EEEEccCCCCCcceEEeeccccccceeEEEEEEEeccccCCCCCCCCcHHHHHHHHHHHHHHHhhc------c---cCCC
Q 023049 194 IFGLHVSSLFPVGTVASRPGPTLAAGGFFEAVINGKGGHAAIPQHTIDPIVAASNVIVSLQHLVSR------E---ADPL 264 (288)
Q Consensus 194 ~i~~e~~~~~~~g~v~~~~g~~~~G~~~~~i~v~G~~aHas~P~~g~NAI~~~~~~i~~l~~~~~~------~---~~~~ 264 (288)
.++.+++...|++.... +..++|..+++|+++|+++|++.|. +.|||..+++++..|+++... . ..+.
T Consensus 169 ~~~~d~g~~~~~~~~~i--~~~~kG~~~~~l~v~G~~~Hs~~~~-~~nai~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~ 245 (400)
T TIGR01880 169 GFALDEGLASPDDVYRV--FYAERVPWWVVVTAPGNPGHGSKLM-ENTAMEKLEKSVESIRRFRESQFQLLQSNPDLAIG 245 (400)
T ss_pred EEEEcCCCcccccccce--eEEeeEEEEEEEEEecCCCCCCCCC-CCCHHHHHHHHHHHHHHhhHHHHHHHhcCcccccc
Confidence 78775432122331111 1234689999999999999999875 479999999999988765211 1 1112
Q ss_pred CCceEEEEEEecCCCCCccccc
Q 023049 265 DSQVVVSLMSDLLYEPHKTDRK 286 (288)
Q Consensus 265 ~~~t~~v~~I~gG~~~n~~~~~ 286 (288)
..+++|+|.|+||...|++|+.
T Consensus 246 ~~~t~~v~~i~gG~~~nvIP~~ 267 (400)
T TIGR01880 246 DVTSVNLTKLKGGVQSNVIPSE 267 (400)
T ss_pred ccceeecceeccCCcCCcCCCc
Confidence 2479999999999999999975
No 24
>PRK13983 diaminopimelate aminotransferase; Provisional
Probab=100.00 E-value=5.9e-35 Score=276.43 Aligned_cols=232 Identities=19% Similarity=0.192 Sum_probs=185.1
Q ss_pred HHHHHHHHHhHhCCCCCC-----ChHHHHHHHHHHHHhCCCC-eEeec-------C--CceEEEEECCC-CCcEEEEEee
Q 023049 50 YWMVNIRRKIHENPELGF-----QEFETSKLIRAELDQMGIP-YKFPV-------A--VTGVVGYIGTG-QPPFVALRAD 113 (288)
Q Consensus 50 ~~li~~~~~L~~iPs~s~-----~E~~~~~~i~~~l~~~G~~-~~~~~-------~--~~nvia~~~~~-~~~~i~l~aH 113 (288)
+++++++++|++|||+++ .|.++++||.++|+++||+ +++.. . ++|++++++++ ++++|+|+||
T Consensus 5 ~~~~~~l~~lv~i~s~s~~~~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~nl~~~~~g~~~~~~lll~~H 84 (400)
T PRK13983 5 DEMIELLSELIAIPAVNPDFGGEGEKEKAEYLESLLKEYGFDEVERYDAPDPRVIEGVRPNIVAKIPGGDGKRTLWIISH 84 (400)
T ss_pred HHHHHHHHHHhCcCCCCCCCCCccHHHHHHHHHHHHHHcCCceEEEEecCCcccccCCCccEEEEecCCCCCCeEEEEee
Confidence 789999999999999873 5899999999999999998 76421 1 58999999764 3479999999
Q ss_pred cccccCCC---CCCCCccccC-CCceecCCc-h--HHHHHHHHHHHHHHhccCCCCceEEEEEEcCCCCc--chHHHHHH
Q 023049 114 MDALAMEE---SVEWEHKSKV-PGKMHACGH-D--AHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEEGG--GGAKKMLD 184 (288)
Q Consensus 114 ~DtVP~~~---~~~~pf~~~~-~G~~~g~G~-d--g~~a~~l~a~~~L~~~~~~~~g~v~~i~~~dEE~g--~Ga~~l~~ 184 (288)
|||||+++ |+.+||++.+ +|++||||. | ++++++|.|+++|++.+..++++|.|+|++|||.| .|++++++
T Consensus 85 ~Dtvp~~~~~~W~~~p~~~~~~~g~lyGrG~~D~K~g~~a~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g~~~g~~~~~~ 164 (400)
T PRK13983 85 MDVVPPGDLSLWETDPFKPVVKDGKIYGRGSEDNGQGIVSSLLALKALMDLGIRPKYNLGLAFVSDEETGSKYGIQYLLK 164 (400)
T ss_pred ccccCCCCcccccCCCCcceeeCCEEEecCccCccchHHHHHHHHHHHHHhCCCCCCcEEEEEEeccccCCcccHHHHHh
Confidence 99999864 5677999875 689999994 4 77777888999999888788999999999999977 38999998
Q ss_pred h--CCCCCcceEEEEccCCCCCcceEEeeccccccceeEEEEEEEeccccCCCCCCCCcHHHHHHHHHHHHHH-Hhhc--
Q 023049 185 A--GALENVEAIFGLHVSSLFPVGTVASRPGPTLAAGGFFEAVINGKGGHAAIPQHTIDPIVAASNVIVSLQH-LVSR-- 259 (288)
Q Consensus 185 ~--g~~~~~d~~i~~e~~~~~~~g~v~~~~g~~~~G~~~~~i~v~G~~aHas~P~~g~NAI~~~~~~i~~l~~-~~~~-- 259 (288)
. +.+.+.|++++.+.. .+++.... .+ .+|..+++|+++|+++|+|.|+.|+|||..+++++.++++ +...
T Consensus 165 ~~~~~~~~~d~~i~~~~~--~~~~~~i~-~~--~~G~~~~~v~v~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~~~~~~~~ 239 (400)
T PRK13983 165 KHPELFKKDDLILVPDAG--NPDGSFIE-IA--EKSILWLKFTVKGKQCHASTPENGINAHRAAADFALELDEALHEKFN 239 (400)
T ss_pred hcccccCCCCEEEEecCC--CCCCceeE-Ee--ecceEEEEEEEEeEccccCCCCCCCCHHHHHHHHHHHHHHHHHhhhc
Confidence 7 656667888875432 23443211 12 3588999999999999999999999999999999999987 4221
Q ss_pred ccCC-C--CCceEEEEEEecC-CCCCccccc
Q 023049 260 EADP-L--DSQVVVSLMSDLL-YEPHKTDRK 286 (288)
Q Consensus 260 ~~~~-~--~~~t~~v~~I~gG-~~~n~~~~~ 286 (288)
..++ . ...+++++.+.+| ..+|++|+.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~g~~~~nvvp~~ 270 (400)
T PRK13983 240 AKDPLFDPPYSTFEPTKKEANVDNINTIPGR 270 (400)
T ss_pred ccccccCCCCcccccceeecCCcCCcccCCe
Confidence 1111 1 1247888999988 589999975
No 25
>PRK13007 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=100.00 E-value=1.3e-34 Score=270.01 Aligned_cols=219 Identities=17% Similarity=0.188 Sum_probs=179.3
Q ss_pred HHHHHHHHHhHhCCCCCCChHHHHHHHHHHHHhC-CCCeEeecCCceEEEEECCCCCcEEEEEeecccccCCCCCCCCcc
Q 023049 50 YWMVNIRRKIHENPELGFQEFETSKLIRAELDQM-GIPYKFPVAVTGVVGYIGTGQPPFVALRADMDALAMEESVEWEHK 128 (288)
Q Consensus 50 ~~li~~~~~L~~iPs~s~~E~~~~~~i~~~l~~~-G~~~~~~~~~~nvia~~~~~~~~~i~l~aH~DtVP~~~~~~~pf~ 128 (288)
+++++++++|++|||++++|.++++||.++|+++ |+++... ++|+++++++++++.|+|+|||||||+++ ||.
T Consensus 7 ~~~~~~l~~li~ips~s~~e~~~~~~l~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~i~l~~H~Dtvp~~~----~~~ 80 (352)
T PRK13007 7 ADLAELTAALVDIPSVSGDEKALADAVEAALRALPHLEVIRH--GNSVVARTDLGRPSRVVLAGHLDTVPVAD----NLP 80 (352)
T ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHhCcCceEEec--CCeEEEEccCCCCCeEEEEccccccCCCC----CCC
Confidence 6799999999999999999999999999999996 8877653 47999999655557899999999999854 343
Q ss_pred cc-CCCceecCCc-h--HHHHHHHHHHHHHHhccCCCCceEEEEEEcCCCCc---chHHHHHHhC-CCCCcceEEEEccC
Q 023049 129 SK-VPGKMHACGH-D--AHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEEGG---GGAKKMLDAG-ALENVEAIFGLHVS 200 (288)
Q Consensus 129 ~~-~~G~~~g~G~-d--g~~a~~l~a~~~L~~~~~~~~g~v~~i~~~dEE~g---~Ga~~l~~~g-~~~~~d~~i~~e~~ 200 (288)
.. .+|++||||+ | +++|++|.|+++|. +++++|.|+|++|||.+ .|++.+++.. .+.++|++|++||+
T Consensus 81 ~~~~~g~i~GrG~~D~Kg~~a~~l~a~~~l~----~~~~~i~~~~~~~EE~~~~~~G~~~~~~~~~~~~~~d~~i~~ep~ 156 (352)
T PRK13007 81 SRREGDRLYGCGASDMKSGLAVMLHLAATLA----EPAHDLTLVFYDCEEVEAEANGLGRLAREHPEWLAGDFAILLEPT 156 (352)
T ss_pred cceeCCEEEccCcccccHHHHHHHHHHHHhh----ccCCCeEEEEEecccccCCcccHHHHHHhcccccCCCEEEEecCC
Confidence 33 3789999997 5 89999999999984 36789999999999986 3888888753 22357999999986
Q ss_pred CCCCcceEEeeccccccceeEEEEEEEeccccCCCCCCCCcHHHHHHHHHHHHHHHhhcccCC---CCCceEEEEEEecC
Q 023049 201 SLFPVGTVASRPGPTLAAGGFFEAVINGKGGHAAIPQHTIDPIVAASNVIVSLQHLVSREADP---LDSQVVVSLMSDLL 277 (288)
Q Consensus 201 ~~~~~g~v~~~~g~~~~G~~~~~i~v~G~~aHas~P~~g~NAI~~~~~~i~~l~~~~~~~~~~---~~~~t~~v~~I~gG 277 (288)
. +.+.. + .+|..+++++++|+++|+|.|+.|+|||..++++|.+++++..+.... ....++|++.|+||
T Consensus 157 ~----~~i~~--~--~~G~~~~~i~v~G~~~Hs~~p~~g~nAi~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~i~gG 228 (352)
T PRK13007 157 D----GVIEA--G--CQGTLRVTVTFHGRRAHSARSWLGENAIHKAAPVLARLAAYEPREVVVDGLTYREGLNAVRISGG 228 (352)
T ss_pred C----CceEe--e--ccceEEEEEEEEecccccCCCccCcCHHHHHHHHHHHHHHhcccccccCCCCccceeEeEeEecC
Confidence 4 23332 2 358899999999999999999999999999999999998875332111 11358999999999
Q ss_pred CCCCccccc
Q 023049 278 YEPHKTDRK 286 (288)
Q Consensus 278 ~~~n~~~~~ 286 (288)
..+|++|+.
T Consensus 229 ~~~nviP~~ 237 (352)
T PRK13007 229 VAGNVIPDE 237 (352)
T ss_pred CcCccCCCe
Confidence 999999975
No 26
>PRK09133 hypothetical protein; Provisional
Probab=100.00 E-value=2.5e-34 Score=278.69 Aligned_cols=232 Identities=16% Similarity=0.115 Sum_probs=185.2
Q ss_pred HHHHHHHHHhHhCCCCC--CChHHHHHHHHHHHHhCCCCeEe---e---cCCceEEEEECCC-CCcEEEEEeecccccCC
Q 023049 50 YWMVNIRRKIHENPELG--FQEFETSKLIRAELDQMGIPYKF---P---VAVTGVVGYIGTG-QPPFVALRADMDALAME 120 (288)
Q Consensus 50 ~~li~~~~~L~~iPs~s--~~E~~~~~~i~~~l~~~G~~~~~---~---~~~~nvia~~~~~-~~~~i~l~aH~DtVP~~ 120 (288)
+++++++++|++|||++ ++|.++++||.++|+++|++++. . ..++||++++++. ++|.|+|+|||||||++
T Consensus 37 ~~~~~~l~~Lv~i~S~s~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~nli~~~~g~~~~~~lll~~H~DtVp~~ 116 (472)
T PRK09133 37 QAARDLYKELIEINTTASTGSTTPAAEAMAARLKAAGFADADIEVTGPYPRKGNLVARLRGTDPKKPILLLAHMDVVEAK 116 (472)
T ss_pred HHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHcCCCceEEEeccCCCCceeEEEEecCCCCCCcEEEEeecccCCCC
Confidence 77999999999999997 78899999999999999998632 1 2468999999653 45889999999999985
Q ss_pred --CCCCCCccccC-CCceecCCc-h--HHHHHHHHHHHHHHhccCCCCceEEEEEEcCCC-Cc-chHHHHHHhCC-CCCc
Q 023049 121 --ESVEWEHKSKV-PGKMHACGH-D--AHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEE-GG-GGAKKMLDAGA-LENV 191 (288)
Q Consensus 121 --~~~~~pf~~~~-~G~~~g~G~-d--g~~a~~l~a~~~L~~~~~~~~g~v~~i~~~dEE-~g-~Ga~~l~~~g~-~~~~ 191 (288)
.|+.+||++.+ +|++||||. | ++++++|.|+++|++.+..++++|.|+|++||| +| .|++++++... .-+.
T Consensus 117 ~~~W~~dPf~~~~~dg~iyGRGa~D~Kg~~aa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~g~~G~~~l~~~~~~~~~~ 196 (472)
T PRK09133 117 REDWTRDPFKLVEENGYFYGRGTSDDKADAAIWVATLIRLKREGFKPKRDIILALTGDEEGTPMNGVAWLAENHRDLIDA 196 (472)
T ss_pred hhcCCCCCCcceEeCCEEEecCcccchHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccCccchHHHHHHHHhhccCe
Confidence 46788999876 689999997 4 889999999999998877788999999999999 55 59999987642 1146
Q ss_pred ceEEEEccCC------CCCcceEEeeccccccceeEEEEEEEeccccCCCCCCCCcHHHHHHHHHHHHHHHhhcc-----
Q 023049 192 EAIFGLHVSS------LFPVGTVASRPGPTLAAGGFFEAVINGKGGHAAIPQHTIDPIVAASNVIVSLQHLVSRE----- 260 (288)
Q Consensus 192 d~~i~~e~~~------~~~~g~v~~~~g~~~~G~~~~~i~v~G~~aHas~P~~g~NAI~~~~~~i~~l~~~~~~~----- 260 (288)
|++|+ |++. ..|+.. .+. ..++|..+++|+++|+++|+|.|+ +.|||..++++|.+|+++..+.
T Consensus 197 ~~~i~-e~~~~~~~~~gept~~-~i~--~g~kG~~~~~i~v~G~~~Hss~p~-~~nAi~~l~~~l~~l~~~~~~~~~~~~ 271 (472)
T PRK09133 197 EFALN-EGGGGTLDEDGKPVLL-TVQ--AGEKTYADFRLEVTNPGGHSSRPT-KDNAIYRLAAALSRLAAYRFPVMLNDV 271 (472)
T ss_pred EEEEE-CCCccccCCCCCceEE-Eee--eecceeEEEEEEEecCCCCCCCCC-CCChHHHHHHHHHHHhhCCCCCccCCc
Confidence 88888 7753 122211 111 224689999999999999999997 5899999999999998641100
Q ss_pred -------------------------------------cCC----CCCceEEEEEEecCCCCCccccc
Q 023049 261 -------------------------------------ADP----LDSQVVVSLMSDLLYEPHKTDRK 286 (288)
Q Consensus 261 -------------------------------------~~~----~~~~t~~v~~I~gG~~~n~~~~~ 286 (288)
.++ ...+++|+|.|+||..+|++|+.
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~gG~~~NvVP~~ 338 (472)
T PRK09133 272 TRAYFKQSAAIETGPLAAAMRAFAANPADEAAIALLSADPSYNAMLRTTCVATMLEGGHAENALPQR 338 (472)
T ss_pred cHHHHHHHHHhCCchHHHHHHHHhcCcchHHHHHHHhcCcchhheeeeeEEeeEEecCCcCccCCCc
Confidence 001 13478999999999999999975
No 27
>PRK08651 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=100.00 E-value=1e-33 Score=267.93 Aligned_cols=225 Identities=20% Similarity=0.246 Sum_probs=184.7
Q ss_pred HHHHHHHHHhHhCCCCC---CChHHHHHHHHHHHHhCCCCeEeec---C--------CceEEEEECCCCCcEEEEEeecc
Q 023049 50 YWMVNIRRKIHENPELG---FQEFETSKLIRAELDQMGIPYKFPV---A--------VTGVVGYIGTGQPPFVALRADMD 115 (288)
Q Consensus 50 ~~li~~~~~L~~iPs~s---~~E~~~~~~i~~~l~~~G~~~~~~~---~--------~~nvia~~~~~~~~~i~l~aH~D 115 (288)
+++++++++|++|||.+ .+|.++++||.++|+++|++++... . ++|+++..+++ +|.|+|+||||
T Consensus 6 ~~~~~~l~~lv~i~S~s~~~~~~~~~a~~l~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ill~~HlD 84 (394)
T PRK08651 6 FDIVEFLKDLIKIPTVNPPGENYEEIAEFLRDTLEELGFSTEIIEVPNEYVKKHDGPRPNLIARRGSG-NPHLHFNGHYD 84 (394)
T ss_pred HHHHHHHHHHhcCCccCCCCcCHHHHHHHHHHHHHHcCCeEEEEecCccccccccCCcceEEEEeCCC-CceEEEEeeee
Confidence 88999999999999987 6788999999999999999887532 1 24578776544 48999999999
Q ss_pred cccCCC-C-CCCCccccC-CCceecCCc---hHHHHHHHHHHHHHHhccCCCCceEEEEEEcCCCCc-chHHHHHHhCCC
Q 023049 116 ALAMEE-S-VEWEHKSKV-PGKMHACGH---DAHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEEGG-GGAKKMLDAGAL 188 (288)
Q Consensus 116 tVP~~~-~-~~~pf~~~~-~G~~~g~G~---dg~~a~~l~a~~~L~~~~~~~~g~v~~i~~~dEE~g-~Ga~~l~~~g~~ 188 (288)
|||.++ + +.+||++.+ +|++||||+ +++++++|+|++.|++.+ +++|.|+|++|||.+ .|++++++.+.+
T Consensus 85 tvp~~~~~~~~~Pf~~~~~~~~~~grG~~D~k~~~~~~l~a~~~l~~~~---~~~v~~~~~~~EE~g~~G~~~~~~~~~~ 161 (394)
T PRK08651 85 VVPPGEGWSVNVPFEPKVKDGKVYGRGASDMKGGIAALLAAFERLDPAG---DGNIELAIVPDEETGGTGTGYLVEEGKV 161 (394)
T ss_pred eecCCCCccccCCCCcEEECCEEEecCccccchHHHHHHHHHHHHHhcC---CCCEEEEEecCccccchhHHHHHhccCC
Confidence 999864 3 678999874 789999996 589999999999998764 789999999999987 599999998765
Q ss_pred CCcceEEEEccCCCCCcceEEeeccccccceeEEEEEEEeccccCCCCCCCCcHHHHHHHHHHHHHHHhhccc------C
Q 023049 189 ENVEAIFGLHVSSLFPVGTVASRPGPTLAAGGFFEAVINGKGGHAAIPQHTIDPIVAASNVIVSLQHLVSREA------D 262 (288)
Q Consensus 189 ~~~d~~i~~e~~~~~~~g~v~~~~g~~~~G~~~~~i~v~G~~aHas~P~~g~NAI~~~~~~i~~l~~~~~~~~------~ 262 (288)
++|.+++.+|+.. +.+.. + .+|..+++|+++|+++|++.|+.|+|||..++++|.+|++...+.. +
T Consensus 162 -~~d~~i~~~~~~~---~~i~~--~--~~G~~~~~i~v~G~~~H~~~p~~g~nAi~~~~~~i~~l~~~~~~~~~~~~~~~ 233 (394)
T PRK08651 162 -TPDYVIVGEPSGL---DNICI--G--HRGLVWGVVKVYGKQAHASTPWLGINAFEAAAKIAERLKSSLSTIKSKYEYDD 233 (394)
T ss_pred -CCCEEEEecCCCC---CceEE--e--cccEEEEEEEEEEeccccCCCccccCHHHHHHHHHHHHHHHHHhhhccccccc
Confidence 3789999887641 23333 2 3588999999999999999999999999999999999987532111 1
Q ss_pred -CCCCceEEEEE--EecCCCCCccccc
Q 023049 263 -PLDSQVVVSLM--SDLLYEPHKTDRK 286 (288)
Q Consensus 263 -~~~~~t~~v~~--I~gG~~~n~~~~~ 286 (288)
.....+++++. |+||.++|++|+.
T Consensus 234 ~~~~~~~~~ig~~~i~gG~~~nviP~~ 260 (394)
T PRK08651 234 ERGAKPTVTLGGPTVEGGTKTNIVPGY 260 (394)
T ss_pred cccCCCceeecceeeeCCCCCCccCCE
Confidence 12356889999 9999999999974
No 28
>PRK08737 acetylornithine deacetylase; Provisional
Probab=100.00 E-value=1.9e-33 Score=264.18 Aligned_cols=215 Identities=13% Similarity=0.059 Sum_probs=172.8
Q ss_pred HHHHHHHHHhHhCCCCC----CChHHHHHHHHHHHHhCCCCeEeec---CCceEEEEECCCCCcEEEEEeecccccCC-C
Q 023049 50 YWMVNIRRKIHENPELG----FQEFETSKLIRAELDQMGIPYKFPV---AVTGVVGYIGTGQPPFVALRADMDALAME-E 121 (288)
Q Consensus 50 ~~li~~~~~L~~iPs~s----~~E~~~~~~i~~~l~~~G~~~~~~~---~~~nvia~~~~~~~~~i~l~aH~DtVP~~-~ 121 (288)
+++++++++|++|||.+ ++|.++++|+.++|+ |++++... ++.|+++..+ +|.|+|+|||||||.+ .
T Consensus 6 ~~~~~~l~~Lv~i~s~~~~~~~~e~~~~~~l~~~l~--g~~~~~~~~~~~~~nli~~~g---~~~lll~gH~DtVp~~~~ 80 (364)
T PRK08737 6 ESTLDHLQALVSFDTRNPPRAITTGGIFDYLRAQLP--GFQVEVIDHGAGAVSLYAVRG---TPKYLFNVHLDTVPDSPH 80 (364)
T ss_pred HHHHHHHHHHhCCCCcCCCCCCCcHHHHHHHHHHhC--CCEEEEecCCCCceEEEEEcC---CCeEEEEeeeCCCCCCCC
Confidence 67899999999999984 357899999999996 88876542 3569998742 3789999999999985 3
Q ss_pred CCCCCccccC-CCceecCCc---hHHHHHHHHHHHHHHhccCCCCceEEEEEEcCCCCcc--hHHHHHHhCCCCCcceEE
Q 023049 122 SVEWEHKSKV-PGKMHACGH---DAHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEEGGG--GAKKMLDAGALENVEAIF 195 (288)
Q Consensus 122 ~~~~pf~~~~-~G~~~g~G~---dg~~a~~l~a~~~L~~~~~~~~g~v~~i~~~dEE~g~--Ga~~l~~~g~~~~~d~~i 195 (288)
|+.+||.+.+ +|++||+|. ++++|+++.|++. +.++|.|+|++|||.|+ |++.+++.+. +.|++|
T Consensus 81 w~~~Pf~~~~~~g~lyGrGa~DmKg~~aa~l~a~~~-------~~~~v~~~~~~dEE~g~~~g~~~~~~~~~--~~~~~i 151 (364)
T PRK08737 81 WSADPHVMRRTDDRVIGLGVCDIKGAAAALLAAANA-------GDGDAAFLFSSDEEANDPRCVAAFLARGI--PYEAVL 151 (364)
T ss_pred CCCCCCceEEECCEEEEECcccchHHHHHHHHHHHc-------cCCCEEEEEEcccccCchhhHHHHHHhCC--CCCEEE
Confidence 6778998765 689999996 3888888888753 35689999999999874 8889998874 579999
Q ss_pred EEccCCCCCcceEEeeccccccceeEEEEEEEeccccCCCC-CCCCcHHHHHHHHHHHHHHHhhcc----cCCCCCceEE
Q 023049 196 GLHVSSLFPVGTVASRPGPTLAAGGFFEAVINGKGGHAAIP-QHTIDPIVAASNVIVSLQHLVSRE----ADPLDSQVVV 270 (288)
Q Consensus 196 ~~e~~~~~~~g~v~~~~g~~~~G~~~~~i~v~G~~aHas~P-~~g~NAI~~~~~~i~~l~~~~~~~----~~~~~~~t~~ 270 (288)
++||+. ..+.. + ++|..+++|+++|+++|+|.| +.|+|||..++++|.++.+..... .+.....++|
T Consensus 152 v~Ept~----~~~~~--~--~kG~~~~~v~v~Gk~aHas~p~~~G~NAI~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~~ 223 (364)
T PRK08737 152 VAEPTM----SEAVL--A--HRGISSVLMRFAGRAGHASGKQDPSASALHQAMRWGGQALDHVESLAHARFGGLTGLRFN 223 (364)
T ss_pred EcCCCC----ceeEE--e--cceeEEEEEEEEeeccccCCCcccCCCHHHHHHHHHHHHHHHHHhhhhhccCCCCCCceE
Confidence 999875 22322 2 358999999999999999988 589999999999998876543211 2223456999
Q ss_pred EEEEecCCCCCccccc
Q 023049 271 SLMSDLLYEPHKTDRK 286 (288)
Q Consensus 271 v~~I~gG~~~n~~~~~ 286 (288)
+|.|+||.++|++|+.
T Consensus 224 vg~i~GG~~~NvVP~~ 239 (364)
T PRK08737 224 IGRVEGGIKANMIAPA 239 (364)
T ss_pred EeeEecCCCCCcCCCc
Confidence 9999999999999985
No 29
>PRK08201 hypothetical protein; Provisional
Probab=100.00 E-value=2.7e-33 Score=270.29 Aligned_cols=213 Identities=15% Similarity=0.171 Sum_probs=172.8
Q ss_pred hhHHHHHhcCCCcHHHHHHHHHHhHhCCCCCC------ChHHHHHHHHHHHHhCCCC-eEee--cCCceEEEEECCC-CC
Q 023049 36 PVKFLDFAKKPEIFYWMVNIRRKIHENPELGF------QEFETSKLIRAELDQMGIP-YKFP--VAVTGVVGYIGTG-QP 105 (288)
Q Consensus 36 ~~~i~~~~~~~~~~~~li~~~~~L~~iPs~s~------~E~~~~~~i~~~l~~~G~~-~~~~--~~~~nvia~~~~~-~~ 105 (288)
++++.+++++++ +++++++++|++|||+++ +|.++++||+++|+++||+ ++.. .+++||++++.++ ++
T Consensus 2 ~~~~~~~~~~~~--~~~~~~l~~LV~i~Svs~~~~~~~~~~~~a~~l~~~l~~~G~~~~~~~~~~~~~~l~a~~~~~~~~ 79 (456)
T PRK08201 2 MQQVEAYLRERR--EAHLEELKEFLRIPSISALSEHKEDVRKAAEWLAGALEKAGLEHVEIMETAGHPIVYADWLHAPGK 79 (456)
T ss_pred chHHHHHHHHHH--HHHHHHHHHHhcCCCCCCCCcchHHHHHHHHHHHHHHHHcCCCeEEEEecCCCCEEEEEecCCCCC
Confidence 357889999988 999999999999999985 5678999999999999997 4332 2467899988543 46
Q ss_pred cEEEEEeecccccCCC---CCCCCccccC-CCceecCCc---hHHHHHHHHHHHHHHhccCCCCceEEEEEEcCCCCc-c
Q 023049 106 PFVALRADMDALAMEE---SVEWEHKSKV-PGKMHACGH---DAHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEEGG-G 177 (288)
Q Consensus 106 ~~i~l~aH~DtVP~~~---~~~~pf~~~~-~G~~~g~G~---dg~~a~~l~a~~~L~~~~~~~~g~v~~i~~~dEE~g-~ 177 (288)
|+|+|.||+||||+++ |+.+||+.++ +|++||||. +|+++++|.|++.|++.+..+.++|.|+|++|||.| .
T Consensus 80 ~~lll~gH~DvVp~~~~~~W~~dPf~~~~~~g~lyGRG~~DmKgglaa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~g~~ 159 (456)
T PRK08201 80 PTVLIYGHYDVQPVDPLNLWETPPFEPTIRDGKLYARGASDDKGQVFMHLKAVEALLKVEGTLPVNVKFCIEGEEEIGSP 159 (456)
T ss_pred CEEEEEeccCCcCCCchhcccCCCCceEeECCEEEEEecccCcHHHHHHHHHHHHHHHhcCCCCCCEEEEEEcccccCCc
Confidence 8999999999999853 6788999876 689999995 489999999999998766667889999999999987 4
Q ss_pred hHHHHHHhC--CCCCcceEEEEccCCCCCcc-eEEeeccccccceeEEEEEEEeccc--cCCCCCC-CCcHHHHHHHHHH
Q 023049 178 GAKKMLDAG--ALENVEAIFGLHVSSLFPVG-TVASRPGPTLAAGGFFEAVINGKGG--HAAIPQH-TIDPIVAASNVIV 251 (288)
Q Consensus 178 Ga~~l~~~g--~~~~~d~~i~~e~~~~~~~g-~v~~~~g~~~~G~~~~~i~v~G~~a--Has~P~~-g~NAI~~~~~~i~ 251 (288)
|+..+++.. .+ +.|++|+.||+...+.. .+.. + ++|..+++|+++|+++ |+|.|.. +.|||..++++|.
T Consensus 160 g~~~~l~~~~~~~-~~d~~ii~e~~~~~~~~~~i~~--g--~kG~~~~~l~v~G~~~~~Hs~~~~~~~~nAi~~~~~~l~ 234 (456)
T PRK08201 160 NLDSFVEEEKDKL-AADVVLISDTTLLGPGKPAICY--G--LRGLAALEIDVRGAKGDLHSGLYGGAVPNALHALVQLLA 234 (456)
T ss_pred cHHHHHHhhHHhc-cCCEEEEeCCCcCCCCCEEEEE--e--cCCeEEEEEEEEeCCCCCccccccCcCCCHHHHHHHHHH
Confidence 788887653 13 36899999987422211 2332 2 4689999999999998 9997654 5799999999999
Q ss_pred HHHH
Q 023049 252 SLQH 255 (288)
Q Consensus 252 ~l~~ 255 (288)
+|++
T Consensus 235 ~l~~ 238 (456)
T PRK08201 235 SLHD 238 (456)
T ss_pred hcCC
Confidence 9975
No 30
>PRK06446 hypothetical protein; Provisional
Probab=100.00 E-value=2.2e-33 Score=269.61 Aligned_cols=200 Identities=17% Similarity=0.220 Sum_probs=163.7
Q ss_pred HHHHHHHHHhHhCCCCCCC-h--HHHHHHHHHHHHhCCCCeEeec--CCceEEEEECCCCCcEEEEEeecccccCC---C
Q 023049 50 YWMVNIRRKIHENPELGFQ-E--FETSKLIRAELDQMGIPYKFPV--AVTGVVGYIGTGQPPFVALRADMDALAME---E 121 (288)
Q Consensus 50 ~~li~~~~~L~~iPs~s~~-E--~~~~~~i~~~l~~~G~~~~~~~--~~~nvia~~~~~~~~~i~l~aH~DtVP~~---~ 121 (288)
+++++++++|++|||++++ | .++++||.++|+++|++++... +++|++++++++.+|+|+|+|||||||++ .
T Consensus 2 ~~~~~~l~eLV~i~S~s~~~~~~~~~a~~l~~~l~~~G~~ve~~~~~~~~~lia~~~~~~~~~vll~gH~DvVp~~~~~~ 81 (436)
T PRK06446 2 DEELYTLIEFLKKPSISATGEGIEETANYLKDTMEKLGIKANIERTKGHPVVYGEINVGAKKTLLIYNHYDVQPVDPLSE 81 (436)
T ss_pred hhHHHHHHHHhCCCCCCCCcHhHHHHHHHHHHHHHHCCCeEEEEecCCCCEEEEEecCCCCCEEEEEecccCCCCCcccc
Confidence 5689999999999999865 3 7899999999999999987542 57899999975546899999999999974 4
Q ss_pred CCCCCccccC-CCceecCCc---hHHHHHHHHHHHHHHhccCCCCceEEEEEEcCCCCc-chHHHHHHhC--CCCCcceE
Q 023049 122 SVEWEHKSKV-PGKMHACGH---DAHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEEGG-GGAKKMLDAG--ALENVEAI 194 (288)
Q Consensus 122 ~~~~pf~~~~-~G~~~g~G~---dg~~a~~l~a~~~L~~~~~~~~g~v~~i~~~dEE~g-~Ga~~l~~~g--~~~~~d~~ 194 (288)
|+.+||++.+ +|++||||. +++++++|.|++.|++.+ .++++|.|+|++|||.| .|++.++++. .+ ++|++
T Consensus 82 W~~~Pf~~~~~dg~lyGRGa~DmKgglaa~l~A~~~l~~~~-~~~~~i~~~~~~dEE~g~~g~~~~l~~~~~~~-~~d~v 159 (436)
T PRK06446 82 WKRDPFSATIENGRIYARGASDNKGTLMARLFAIKHLIDKH-KLNVNVKFLYEGEEEIGSPNLEDFIEKNKNKL-KADSV 159 (436)
T ss_pred ccCCCCceEEECCEEEEEeccCCcHHHHHHHHHHHHHHHcC-CCCCCEEEEEEcccccCCHhHHHHHHHHHHHh-CCCEE
Confidence 6788999876 789999995 489999999998887654 57889999999999998 4888887652 23 46887
Q ss_pred EEEccCCCCCcc--eEEeeccccccceeEEEEEEEe--ccccCCCCCCCCcHHHHHHHHHHHHHHH
Q 023049 195 FGLHVSSLFPVG--TVASRPGPTLAAGGFFEAVING--KGGHAAIPQHTIDPIVAASNVIVSLQHL 256 (288)
Q Consensus 195 i~~e~~~~~~~g--~v~~~~g~~~~G~~~~~i~v~G--~~aHas~P~~g~NAI~~~~~~i~~l~~~ 256 (288)
| .||+...+.| .+.. + .+|..|++++++| +++|+|.|+.|.|||..++++|.+|++.
T Consensus 160 i-~E~~~~~~~~~~~i~~--~--~kG~~~~~l~v~G~~~~~Hss~p~~g~NAi~~~~~~l~~l~~~ 220 (436)
T PRK06446 160 I-MEGAGLDPKGRPQIVL--G--VKGLLYVELVLRTGTKDLHSSNAPIVRNPAWDLVKLLSTLVDG 220 (436)
T ss_pred E-ECCCCccCCCCeEEEE--e--cCeEEEEEEEEEeCCCCCCCCCCccCCCHHHHHHHHHHhhCCC
Confidence 7 4876432333 3332 2 3689999999999 9999999999999999999999999753
No 31
>PRK08652 acetylornithine deacetylase; Provisional
Probab=100.00 E-value=8e-33 Score=257.19 Aligned_cols=214 Identities=15% Similarity=0.049 Sum_probs=173.4
Q ss_pred HHHHHHHHHhHhCCCCCCChHHHHHHHHHHHHhCCCCeEeecC--CceEEEEECCCCCcEEEEEeecccccCCCCCCCCc
Q 023049 50 YWMVNIRRKIHENPELGFQEFETSKLIRAELDQMGIPYKFPVA--VTGVVGYIGTGQPPFVALRADMDALAMEESVEWEH 127 (288)
Q Consensus 50 ~~li~~~~~L~~iPs~s~~E~~~~~~i~~~l~~~G~~~~~~~~--~~nvia~~~~~~~~~i~l~aH~DtVP~~~~~~~pf 127 (288)
+++++++++|++|||++++|.++++||.++|+++|++++.... ..|+++ +++|+|+|+|||||||.+. .|+
T Consensus 2 ~~~~~~~~~lv~ips~s~~e~~~~~~l~~~l~~~G~~v~~~~~~~~~~~~~----~~~~~i~l~~H~D~vp~~~---~~~ 74 (347)
T PRK08652 2 ERAKELLKQLVKIPSPSGQEDEIALHIMEFLESLGYDVHIESDGEVINIVV----NSKAELFVEVHYDTVPVRA---EFF 74 (347)
T ss_pred hhHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHcCCEEEEEecCceeEEEc----CCCCEEEEEccccccCCCC---CCE
Confidence 5689999999999999999999999999999999999876432 356665 2358999999999999742 233
Q ss_pred cccCCCceecCCc---hHHHHHHHHHHHHHHhccCCCCceEEEEEEcCCCCc-chHHHHHHhCCCCCcceEEEEccCCCC
Q 023049 128 KSKVPGKMHACGH---DAHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEEGG-GGAKKMLDAGALENVEAIFGLHVSSLF 203 (288)
Q Consensus 128 ~~~~~G~~~g~G~---dg~~a~~l~a~~~L~~~~~~~~g~v~~i~~~dEE~g-~Ga~~l~~~g~~~~~d~~i~~e~~~~~ 203 (288)
..+|++||+|. ++++|+++.|++.|++. .++++|.|+|++|||.| .|++.+++.. ..|++|+.||+.
T Consensus 75 --~~~g~iyGrG~~D~Kg~~a~~l~a~~~l~~~--~~~~~v~~~~~~dEE~g~~G~~~~~~~~---~~d~~i~~ep~~-- 145 (347)
T PRK08652 75 --VDGVYVYGTGACDAKGGVAAILLALEELGKE--FEDLNVGIAFVSDEEEGGRGSALFAERY---RPKMAIVLEPTD-- 145 (347)
T ss_pred --EECCEEEeccchhhhHHHHHHHHHHHHHhhc--ccCCCEEEEEecCcccCChhHHHHHHhc---CCCEEEEecCCC--
Confidence 23688898884 58999999999999864 34679999999999986 6999998862 358999999863
Q ss_pred CcceEEeeccccccceeEEEEEEEeccccCCCCCCCCcHHHHHHHHHHHHHHHhhcccCCCCCceEEEEEEecCCCCCcc
Q 023049 204 PVGTVASRPGPTLAAGGFFEAVINGKGGHAAIPQHTIDPIVAASNVIVSLQHLVSREADPLDSQVVVSLMSDLLYEPHKT 283 (288)
Q Consensus 204 ~~g~v~~~~g~~~~G~~~~~i~v~G~~aHas~P~~g~NAI~~~~~~i~~l~~~~~~~~~~~~~~t~~v~~I~gG~~~n~~ 283 (288)
+.+.. .++|..+++|+++|+++|++.|+.|.|||.+++++|..|+++........ .++++++.|+||..+|++
T Consensus 146 --~~i~~----~~~g~~~~~i~~~G~~~H~s~p~~g~nAi~~~a~~i~~l~~~~~~~~~~~-~~~~~~~~i~gg~~~nvi 218 (347)
T PRK08652 146 --LKVAI----AHYGNLEAYVEVKGKPSHGACPESGVNAIEKAFEMLEKLKELLKALGKYF-DPHIGIQEIIGGSPEYSI 218 (347)
T ss_pred --Cceee----ecccEEEEEEEEEeeecccCCCCcCcCHHHHHHHHHHHHHHHHHhhhccc-CCCCcceeeecCCCCCcc
Confidence 23332 23588999999999999999999999999999999999998753322112 246788889999999999
Q ss_pred ccc
Q 023049 284 DRK 286 (288)
Q Consensus 284 ~~~ 286 (288)
|+.
T Consensus 219 P~~ 221 (347)
T PRK08652 219 PAL 221 (347)
T ss_pred CCc
Confidence 975
No 32
>TIGR01883 PepT-like peptidase T-like protein. This model represents a clade of enzymes closely related to Peptidase T, an aminotripeptidase found in bacteria. This clade consists of gram positive bacteria of which several additionally contain a Peptidase T gene.
Probab=100.00 E-value=6.6e-33 Score=259.53 Aligned_cols=217 Identities=18% Similarity=0.188 Sum_probs=177.1
Q ss_pred HHHHHHHhHhCCCCCCChHHHHHHHHHHHHhCCCCeEeec------CCceEEEEECCC-CCcEEEEEeecccccCCCCCC
Q 023049 52 MVNIRRKIHENPELGFQEFETSKLIRAELDQMGIPYKFPV------AVTGVVGYIGTG-QPPFVALRADMDALAMEESVE 124 (288)
Q Consensus 52 li~~~~~L~~iPs~s~~E~~~~~~i~~~l~~~G~~~~~~~------~~~nvia~~~~~-~~~~i~l~aH~DtVP~~~~~~ 124 (288)
+++++++|++|||++++|.++++||.++|+++|++++... +++|++++++++ ++|+|+|+|||||||.++
T Consensus 2 ~~~~~~~l~~i~s~s~~e~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~l~~H~D~V~~~~--- 78 (361)
T TIGR01883 2 LKKYFLELIQIDSESGKEKAILTYLKKQITKLGIPVSLDEVPAEVSNDNNLIARLPGTVKFDTIFFCGHMDTVPPGA--- 78 (361)
T ss_pred hHHHHHHHeecCCCCCcHHHHHHHHHHHHHHcCCEEEEeccccccCCCceEEEEEeCCCCCCcEEEEeeccccCCCC---
Confidence 6889999999999999999999999999999999987642 368999999664 458999999999999743
Q ss_pred CCcccc-CCCceecCCc-----h--HHHHHHHHHHHHHHhccCCCCceEEEEEEcCCCCc-chHHHHHHhCCCCCcceEE
Q 023049 125 WEHKSK-VPGKMHACGH-----D--AHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEEGG-GGAKKMLDAGALENVEAIF 195 (288)
Q Consensus 125 ~pf~~~-~~G~~~g~G~-----d--g~~a~~l~a~~~L~~~~~~~~g~v~~i~~~dEE~g-~Ga~~l~~~g~~~~~d~~i 195 (288)
+|.+. .+|++||+|+ | ++++++|.+++.|++.+ .++++|.|+|++|||.+ .|++.+.+.+. ..++.+
T Consensus 79 -~~~~~~~~~~~~g~G~~~~g~D~k~g~a~~l~~~~~l~~~~-~~~~~v~~~~~~~EE~g~~G~~~~~~~~~--~~~~~~ 154 (361)
T TIGR01883 79 -GPEPVVEDGIFTSLGGTILGADDKAGVAAMLEAMDVLSTEE-TPHGTIEFIFTVKEELGLIGMRLFDESKI--TAAYGY 154 (361)
T ss_pred -CCCceecCCeEecCCCeEeeccccHHHHHHHHHHHHHHhcC-CCCCCEEEEEEcccccCchhHhHhChhhc--CcceeE
Confidence 34433 3578888885 7 88999999999998865 57889999999999987 59998877542 357777
Q ss_pred EEccCCCCCcceEEeeccccccceeEEEEEEEeccccCC-CCCCCCcHHHHHHHHHHHHHHHhhcccCCCCCceEEEEEE
Q 023049 196 GLHVSSLFPVGTVASRPGPTLAAGGFFEAVINGKGGHAA-IPQHTIDPIVAASNVIVSLQHLVSREADPLDSQVVVSLMS 274 (288)
Q Consensus 196 ~~e~~~~~~~g~v~~~~g~~~~G~~~~~i~v~G~~aHas-~P~~g~NAI~~~~~~i~~l~~~~~~~~~~~~~~t~~v~~I 274 (288)
+++++. +.+.+... .+|..+++++++|+++|++ .|+.|+|||..++++|.+|+.. ..+ ...++|++.|
T Consensus 155 ~~~~~~--~~~~i~~~----~~g~~~~~i~~~G~~~Ha~~~p~~g~nAi~~~~~~i~~l~~~---~~~--~~~~~~i~~i 223 (361)
T TIGR01883 155 CLDAPG--EVGNIQLA----APTQVKVDATIAGKDAHAGLVPEDGISAISVARMAIHAMRLG---RID--EETTANIGSF 223 (361)
T ss_pred EEeCCC--CcceEEec----CCceEEEEEEEEeeecCCCCCcccCcCHHHHHHHHHHhcccc---CCC--Ccccccccee
Confidence 777643 23444432 2578999999999999986 7999999999999999988653 122 2467999999
Q ss_pred ecCCCCCccccc
Q 023049 275 DLLYEPHKTDRK 286 (288)
Q Consensus 275 ~gG~~~n~~~~~ 286 (288)
+||..+|++|+.
T Consensus 224 ~gG~~~nvVP~~ 235 (361)
T TIGR01883 224 SGGVNTNIVQDE 235 (361)
T ss_pred ecCCccCccCCc
Confidence 999999999985
No 33
>PRK07906 hypothetical protein; Provisional
Probab=100.00 E-value=8.5e-33 Score=264.59 Aligned_cols=230 Identities=15% Similarity=0.184 Sum_probs=180.2
Q ss_pred HHHHHHhHhCCCCC------CChHHHHHHHHHHHHhCCCCeEeec---CCceEEEEECCC-C-CcEEEEEeecccccCC-
Q 023049 53 VNIRRKIHENPELG------FQEFETSKLIRAELDQMGIPYKFPV---AVTGVVGYIGTG-Q-PPFVALRADMDALAME- 120 (288)
Q Consensus 53 i~~~~~L~~iPs~s------~~E~~~~~~i~~~l~~~G~~~~~~~---~~~nvia~~~~~-~-~~~i~l~aH~DtVP~~- 120 (288)
++++++|++|||++ ++|.++++||.++|+++|++++... .++|+++++++. + .|+|+|++||||||.+
T Consensus 2 ~~ll~~Lv~i~S~s~~~~~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~~nv~~~~~g~~~~~~~lll~~H~DtVp~~~ 81 (426)
T PRK07906 2 VDLCSELIRIDTTNTGDGTGKGEREAAEYVAEKLAEVGLEPTYLESAPGRANVVARLPGADPSRPALLVHGHLDVVPAEA 81 (426)
T ss_pred hHHHHHHhcccccCCCCCCCchHHHHHHHHHHHHHhCCCCeEEeecCCCceEEEEEEeCCCCCCCcEEEEcccccCCCCc
Confidence 68899999999998 6899999999999999999987642 467999999653 3 4789999999999985
Q ss_pred -CCCCCCccccC-CCceecCCc---hHHHHHHHHHHHHHHhccCCCCceEEEEEEcCCCCc--chHHHHHHhC--CCCCc
Q 023049 121 -ESVEWEHKSKV-PGKMHACGH---DAHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEEGG--GGAKKMLDAG--ALENV 191 (288)
Q Consensus 121 -~~~~~pf~~~~-~G~~~g~G~---dg~~a~~l~a~~~L~~~~~~~~g~v~~i~~~dEE~g--~Ga~~l~~~g--~~~~~ 191 (288)
.|+.+||++.+ +|++||||. +++++++|+|+++|++.+..++++|.|+|++|||.+ .|++++++.. .++..
T Consensus 82 ~~W~~~Pf~~~~~dg~iyGrG~~D~Kg~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~g~~~g~~~l~~~~~~~~~~~ 161 (426)
T PRK07906 82 ADWSVHPFSGEIRDGYVWGRGAVDMKDMDAMMLAVVRHLARTGRRPPRDLVFAFVADEEAGGTYGAHWLVDNHPELFEGV 161 (426)
T ss_pred ccCccCCCCceeeCCEEEecCccccchHHHHHHHHHHHHHHcCCCCCccEEEEEecCcccchhhhHHHHHHHHHHhccch
Confidence 36778999875 689999996 389999999999999988888999999999999997 3899998753 22222
Q ss_pred ceEEEEccCCC---CCcc--eEEeeccccccceeEEEEEEEeccccCCCCCCCCcHHHHHHHHHHHHHHHhhcc------
Q 023049 192 EAIFGLHVSSL---FPVG--TVASRPGPTLAAGGFFEAVINGKGGHAAIPQHTIDPIVAASNVIVSLQHLVSRE------ 260 (288)
Q Consensus 192 d~~i~~e~~~~---~~~g--~v~~~~g~~~~G~~~~~i~v~G~~aHas~P~~g~NAI~~~~~~i~~l~~~~~~~------ 260 (288)
+ +++.|++.. .+.+ ...+ ....+|..+++|+++|+++|+|.|+. +|||..++++|..|+++..+.
T Consensus 162 ~-~ii~e~~~~~~~~~~~~~~~~i--~~~~kG~~~~~v~v~G~~~Hss~p~~-~nAi~~~~~~l~~l~~~~~~~~~~~~~ 237 (426)
T PRK07906 162 T-EAISEVGGFSLTVPGRDRLYLI--ETAEKGLAWMRLTARGRAGHGSMVND-DNAVTRLAEAVARIGRHRWPLVLTPTV 237 (426)
T ss_pred h-eEEECCCceeeccCCCccEEEE--EeccceEEEEEEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHHhCCCCcccCHHH
Confidence 3 345666431 1111 1112 12346899999999999999999974 999999999999997541100
Q ss_pred --------------cCCC-------------------CCceEEEEEEecCCCCCccccc
Q 023049 261 --------------ADPL-------------------DSQVVVSLMSDLLYEPHKTDRK 286 (288)
Q Consensus 261 --------------~~~~-------------------~~~t~~v~~I~gG~~~n~~~~~ 286 (288)
.++. ..+++|+|.|+||.+.|++|+.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~t~~~~~i~gG~~~NviP~~ 296 (426)
T PRK07906 238 RAFLDGVAELTGLEFDPDDPDALLAKLGPAARMVGATLRNTANPTMLKAGYKVNVIPGT 296 (426)
T ss_pred HHHHHHhhhhcCcccCcccHHHHHHHHhhcCcchhhhhcccccceeEeccCccccCCCc
Confidence 0010 0368999999999999999975
No 34
>PRK07907 hypothetical protein; Provisional
Probab=100.00 E-value=2.5e-32 Score=263.14 Aligned_cols=241 Identities=14% Similarity=0.126 Sum_probs=190.7
Q ss_pred hhHHHHHhcCCCcHHHHHHHHHHhHhCCCCCCC------hHHHHHHHHHHHHhCCC-CeEee--cCCceEEEEECCC-CC
Q 023049 36 PVKFLDFAKKPEIFYWMVNIRRKIHENPELGFQ------EFETSKLIRAELDQMGI-PYKFP--VAVTGVVGYIGTG-QP 105 (288)
Q Consensus 36 ~~~i~~~~~~~~~~~~li~~~~~L~~iPs~s~~------E~~~~~~i~~~l~~~G~-~~~~~--~~~~nvia~~~~~-~~ 105 (288)
..++.+++++++ +++++++++|++|||++++ |.++++||.++|+++|| +++.. .+++|++++++++ .+
T Consensus 6 ~~~~~~~i~~~~--~~~~~ll~~LV~ipS~s~~~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~nl~a~~~~~~~~ 83 (449)
T PRK07907 6 ADDLRARVAELL--PRVRADLEELVRIPSVAADPFRREEVARSAEWVADLLREAGFDDVRVVSADGAPAVIGTRPAPPGA 83 (449)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHhcCCCCCCCccchhhHHHHHHHHHHHHHHcCCceEEEEecCCCCEEEEEecCCCCC
Confidence 457899999887 9999999999999999863 68899999999999998 66653 3578999999754 46
Q ss_pred cEEEEEeecccccCCC---CCCCCccccC-CCceecCCc-h--HHHHHHHHHHHHHHhccCCCCceEEEEEEcCCCCc-c
Q 023049 106 PFVALRADMDALAMEE---SVEWEHKSKV-PGKMHACGH-D--AHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEEGG-G 177 (288)
Q Consensus 106 ~~i~l~aH~DtVP~~~---~~~~pf~~~~-~G~~~g~G~-d--g~~a~~l~a~~~L~~~~~~~~g~v~~i~~~dEE~g-~ 177 (288)
|+|+|+||+||||+++ |+.+||++.+ +|++||||. | |++++++.|+++| +..++++|.|++++|||.| .
T Consensus 84 ~~lll~gH~DvVp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kg~~aa~l~a~~~l---~~~~~~~i~~~~~~dEE~g~~ 160 (449)
T PRK07907 84 PTVLLYAHHDVQPPGDPDAWDSPPFELTERDGRLYGRGAADDKGGIAMHLAALRAL---GGDLPVGVTVFVEGEEEMGSP 160 (449)
T ss_pred CEEEEEcccCCCCCCCccccCCCCceeEEECCEEEECCccCCcHHHHHHHHHHHHh---ccCCCCcEEEEEEcCcccCCc
Confidence 8999999999999853 6778999875 789999996 3 8999999999988 2356789999999999987 5
Q ss_pred hHHHHHHhCC-CCCcceEEEEccCCCCCcc--eEEeeccccccceeEEEEEEE--eccccCCCC-CCCCcHHHHHHHHHH
Q 023049 178 GAKKMLDAGA-LENVEAIFGLHVSSLFPVG--TVASRPGPTLAAGGFFEAVIN--GKGGHAAIP-QHTIDPIVAASNVIV 251 (288)
Q Consensus 178 Ga~~l~~~g~-~~~~d~~i~~e~~~~~~~g--~v~~~~g~~~~G~~~~~i~v~--G~~aHas~P-~~g~NAI~~~~~~i~ 251 (288)
|++++++... ..+.|++|+.||+... .+ .+.. + ++|..+++++++ |+++|+|.| ..+.|||..++++|.
T Consensus 161 g~~~~l~~~~~~~~~d~~iv~E~~~~~-~~~p~i~~--~--~kG~~~~~l~v~~~G~~~Hss~~~~~~~nAi~~~~~~l~ 235 (449)
T PRK07907 161 SLERLLAEHPDLLAADVIVIADSGNWS-VGVPALTT--S--LRGNADVVVTVRTLEHAVHSGQFGGAAPDALTALVRLLA 235 (449)
T ss_pred cHHHHHHhchHhhcCCEEEEecCCcCC-CCCeEEEE--e--cCCcEEEEEEEEECCCCCCCccccccCCCHHHHHHHHHH
Confidence 8999988631 1246899999986421 11 2222 2 468899999998 899999974 668999999999999
Q ss_pred HHHHHhhcc-------cCC---------------------------------CCCceEEEEEEec---CCCCCccccc
Q 023049 252 SLQHLVSRE-------ADP---------------------------------LDSQVVVSLMSDL---LYEPHKTDRK 286 (288)
Q Consensus 252 ~l~~~~~~~-------~~~---------------------------------~~~~t~~v~~I~g---G~~~n~~~~~ 286 (288)
+|++...+. ..+ ...+++|++.|++ |...|++|+.
T Consensus 236 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~i~~i~~~~~g~~~nvIP~~ 313 (449)
T PRK07907 236 TLHDEDGNVAVDGLDATEPWLGVDYDEERFRADAGVLDGVELIGTGSVADRLWAKPAITVIGIDAPPVAGASNALPPS 313 (449)
T ss_pred hhCCCCCCEeCCCccCCCCcccccccHHHHHHHhhhhhcccccCCChHHHHhhhcCcEEEEeeecCCCCCCCCEecCc
Confidence 997642110 000 1246899999996 5688999975
No 35
>PRK08262 hypothetical protein; Provisional
Probab=100.00 E-value=1.4e-32 Score=267.40 Aligned_cols=230 Identities=14% Similarity=0.111 Sum_probs=178.3
Q ss_pred HHHHHHHHHhHhCCCCCCChH---------HHHHHHHHHHHhCCCCeEee-cCCceEEEEECCC-CC-cEEEEEeecccc
Q 023049 50 YWMVNIRRKIHENPELGFQEF---------ETSKLIRAELDQMGIPYKFP-VAVTGVVGYIGTG-QP-PFVALRADMDAL 117 (288)
Q Consensus 50 ~~li~~~~~L~~iPs~s~~E~---------~~~~~i~~~l~~~G~~~~~~-~~~~nvia~~~~~-~~-~~i~l~aH~DtV 117 (288)
+++++++++|++|||++++|. ++++||.++|+.+|++++.. .+++|+++.+.+. ++ |+|+|+||||||
T Consensus 44 ~~~v~~L~~lv~i~S~s~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~~~~~~~~~vv~~~~g~~~~~~~ill~gH~DvV 123 (486)
T PRK08262 44 DAAAERLSEAIRFRTISNRDRAEDDAAAFDALHAHLEESYPAVHAALEREVVGGHSLLYTWKGSDPSLKPIVLMAHQDVV 123 (486)
T ss_pred HHHHHHHHHhcccceeccCCCCcccHHHHHHHHHHHHHhChhhhceeEEEEECCccEEEEEECCCCCCCeEEEECccccc
Confidence 889999999999999998763 48899999999999987653 2346888887543 33 889999999999
Q ss_pred cCCC-----CCCCCccccC-CCceecCCc---hHHHHHHHHHHHHHHhccCCCCceEEEEEEcCCCCc-chHHHHHHh--
Q 023049 118 AMEE-----SVEWEHKSKV-PGKMHACGH---DAHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEEGG-GGAKKMLDA-- 185 (288)
Q Consensus 118 P~~~-----~~~~pf~~~~-~G~~~g~G~---dg~~a~~l~a~~~L~~~~~~~~g~v~~i~~~dEE~g-~Ga~~l~~~-- 185 (288)
|+++ |+.+||++.+ +|++||||. ||+++++|.|+++|++.+..++++|.|+|++|||.| .|++++++.
T Consensus 124 p~~~~~~~~W~~~Pf~~~~~dg~lyGRG~~D~Kg~~aa~L~A~~~l~~~~~~l~~~I~llf~~dEE~g~~G~~~l~~~l~ 203 (486)
T PRK08262 124 PVAPGTEGDWTHPPFSGVIADGYVWGRGALDDKGSLVAILEAAEALLAQGFQPRRTIYLAFGHDEEVGGLGARAIAELLK 203 (486)
T ss_pred CCCCCCcccCccCCCceEeeCCEEEecCccccchhHHHHHHHHHHHHHcCCCCCCeEEEEEecccccCCcCHHHHHHHHH
Confidence 9853 4556999875 689999994 699999999999999887778899999999999987 588888763
Q ss_pred --CCCCCcceEE------EEccC--CCCCcceEEeeccccccceeEEEEEEEeccccCCCCCCCCcHHHHHHHHHHHHHH
Q 023049 186 --GALENVEAIF------GLHVS--SLFPVGTVASRPGPTLAAGGFFEAVINGKGGHAAIPQHTIDPIVAASNVIVSLQH 255 (288)
Q Consensus 186 --g~~~~~d~~i------~~e~~--~~~~~g~v~~~~g~~~~G~~~~~i~v~G~~aHas~P~~g~NAI~~~~~~i~~l~~ 255 (288)
+. +.|+++ ..++. ...|++.+.. ..+|..+++|+++|+++|++.|+. .|||..++++|.+|++
T Consensus 204 ~~~~--~~~~~~~~~~~i~~~~~~~~~~p~~~i~~----~~kG~~~~~i~v~G~~~Hss~p~~-~nai~~l~~~l~~l~~ 276 (486)
T PRK08262 204 ERGV--RLAFVLDEGGAITEGVLPGVKKPVALIGV----AEKGYATLELTARATGGHSSMPPR-QTAIGRLARALTRLED 276 (486)
T ss_pred HhcC--CEEEEEeCCceecccccCCCCceEEeeEE----eeeeeEEEEEEEecCCCCCCCCCC-CCHHHHHHHHHHHHhh
Confidence 22 234432 22211 1223344332 235889999999999999999999 9999999999999986
Q ss_pred Hhh----------------cc----------------------------cCCCCCceEEEEEEecCCCCCccccc
Q 023049 256 LVS----------------RE----------------------------ADPLDSQVVVSLMSDLLYEPHKTDRK 286 (288)
Q Consensus 256 ~~~----------------~~----------------------------~~~~~~~t~~v~~I~gG~~~n~~~~~ 286 (288)
... +. ..+...+|+|++.|+||...|++|+.
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~i~~I~gG~~~NvIP~~ 351 (486)
T PRK08262 277 NPLPMRLRGPVAEMFDTLAPEMSFAQRVVLANLWLFEPLLLRVLAKSPETAAMLRTTTAPTMLKGSPKDNVLPQR 351 (486)
T ss_pred CCCCCccChHHHHHHHHHHHhcCHHHHHHhhcccchhhHHHHHHhcCCccceeEEeeeeeeEEecCCccccCCCc
Confidence 310 00 00123578999999999999999975
No 36
>PRK07318 dipeptidase PepV; Reviewed
Probab=100.00 E-value=2.7e-32 Score=264.10 Aligned_cols=238 Identities=12% Similarity=0.105 Sum_probs=177.1
Q ss_pred HHHHHhcCCCcHHHHHHHHHHhHhCCCCCCC------------hHHHHHHHHHHHHhCCCCeEeecCCceEEEEEC-CCC
Q 023049 38 KFLDFAKKPEIFYWMVNIRRKIHENPELGFQ------------EFETSKLIRAELDQMGIPYKFPVAVTGVVGYIG-TGQ 104 (288)
Q Consensus 38 ~i~~~~~~~~~~~~li~~~~~L~~iPs~s~~------------E~~~~~~i~~~l~~~G~~~~~~~~~~nvia~~~-~~~ 104 (288)
++.+++++++ +++++++++|++|||.+++ |.++++||.++|+++||+++.. .|+++++. +..
T Consensus 4 ~~~~~~~~~~--~~~~~~l~~lv~i~S~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~G~~~~~~---~n~~~~~~~~~~ 78 (466)
T PRK07318 4 DWKKEVEKRK--DDLIEDLQELLRINSVRDDSKAKEGAPFGPGPVKALEKFLEIAERDGFKTKNV---DNYAGHIEYGEG 78 (466)
T ss_pred hHHHHHHHhH--HHHHHHHHHHhccCcccCCcccccCCCCCccHHHHHHHHHHHHHHCCCEEEEe---cCccceEEECCC
Confidence 3678888888 8999999999999998865 5689999999999999998754 36666653 223
Q ss_pred CcEEEEEeecccccCCC-CCCCCccccC-CCceecCCc---hHHHHHHHHHHHHHHhccCCCCceEEEEEEcCCCCc-ch
Q 023049 105 PPFVALRADMDALAMEE-SVEWEHKSKV-PGKMHACGH---DAHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEEGG-GG 178 (288)
Q Consensus 105 ~~~i~l~aH~DtVP~~~-~~~~pf~~~~-~G~~~g~G~---dg~~a~~l~a~~~L~~~~~~~~g~v~~i~~~dEE~g-~G 178 (288)
.|+|+|+||+||||+++ |+.+||++.+ +|++||+|. +|+++++++|++.|++.+..++++|.|+|++|||.| .|
T Consensus 79 ~~~l~l~gH~DvVp~~~~W~~~Pf~~~~~dg~lyGRG~~DmKgg~aa~l~Al~~l~~~g~~~~~~i~l~~~~DEE~g~~G 158 (466)
T PRK07318 79 EEVLGILGHLDVVPAGDGWDTDPYEPVIKDGKIYARGTSDDKGPTMAAYYALKIIKELGLPLSKKVRFIVGTDEESGWKC 158 (466)
T ss_pred CCEEEEEEecCCCCCCCCCCCCCcceEEECCEEEEcccccCcHHHHHHHHHHHHHHHcCCCCCccEEEEEEcccccCchh
Confidence 48999999999999864 6778999875 689999995 489999999999999988788899999999999998 59
Q ss_pred HHHHHHhCCCCC----cce---EEEEccCC-----------------------CCCcce------EE-------------
Q 023049 179 AKKMLDAGALEN----VEA---IFGLHVSS-----------------------LFPVGT------VA------------- 209 (288)
Q Consensus 179 a~~l~~~g~~~~----~d~---~i~~e~~~-----------------------~~~~g~------v~------------- 209 (288)
++++++...... .|. ++..|++. +.+++. +.
T Consensus 159 ~~~l~~~~~~~~~~~~~d~~~~vi~~E~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~ 238 (466)
T PRK07318 159 MDYYFEHEEAPDFGFSPDAEFPIINGEKGITTFDLVHFEGENEGDYVLVSFKSGLRENMVPDSAEAVITGDDLDDLIAAF 238 (466)
T ss_pred HHHHHHhCCCCCEEEEeCCCCcEEEEEeeeEEEEEEeccccCCCCceeEEEEcCccceecCcccEEEEecCCHHHHHHHH
Confidence 999998742110 111 34444421 000010 00
Q ss_pred -------eeccccccceeEEEEEEEeccccCCCCCCCCcHHHHHHHHHHHHHH------H----hh--------------
Q 023049 210 -------SRPGPTLAAGGFFEAVINGKGGHAAIPQHTIDPIVAASNVIVSLQH------L----VS-------------- 258 (288)
Q Consensus 210 -------~~~g~~~~G~~~~~i~v~G~~aHas~P~~g~NAI~~~~~~i~~l~~------~----~~-------------- 258 (288)
.++|....+..|++|+++|+++|+|.|+.|+|||..|+++|.+|+. + ..
T Consensus 239 ~~~~~~~~~kG~~~~~~~~~~i~v~G~aaH~s~p~~g~NAI~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (466)
T PRK07318 239 EAFLAENGLKGELEEEGGKLVLTVIGKSAHGSTPEKGVNAATYLAKFLNQLNLDGDAKAFLDFAAEYLHEDTRGEKLGIA 318 (466)
T ss_pred HHHHhhcCceEEEEecCCEEEEEEEeeEcccCCCccCccHHHHHHHHHHhccCchhHHHHHHHHHHhcCCCCCcccCCCc
Confidence 0111111123489999999999999999999999999999999864 1 00
Q ss_pred cccCCCCCceEEEEEEecCCCC
Q 023049 259 READPLDSQVVVSLMSDLLYEP 280 (288)
Q Consensus 259 ~~~~~~~~~t~~v~~I~gG~~~ 280 (288)
......+..++|+|.|+||..+
T Consensus 319 ~~~~~~g~~t~nvg~i~gg~~~ 340 (466)
T PRK07318 319 YEDDVMGDLTMNVGVFSFDEEK 340 (466)
T ss_pred ccCCCccCeEEEeeEEEEecCc
Confidence 0011124579999999999653
No 37
>PRK00466 acetyl-lysine deacetylase; Validated
Probab=100.00 E-value=6.5e-32 Score=251.85 Aligned_cols=207 Identities=14% Similarity=0.070 Sum_probs=169.8
Q ss_pred HHHHHHHHHhHhCCCCCCChHHHHHHHHHHHHhCCCCeEeecCCceEEEEECCCCCcEEEEEeecccccCCCCCCCCccc
Q 023049 50 YWMVNIRRKIHENPELGFQEFETSKLIRAELDQMGIPYKFPVAVTGVVGYIGTGQPPFVALRADMDALAMEESVEWEHKS 129 (288)
Q Consensus 50 ~~li~~~~~L~~iPs~s~~E~~~~~~i~~~l~~~G~~~~~~~~~~nvia~~~~~~~~~i~l~aH~DtVP~~~~~~~pf~~ 129 (288)
+++++++++|++|||++++|.++++||.++|+++|+++++.. ..|++. .+ .|.|+|+||+||||. +|.+
T Consensus 10 ~~~~~~l~~lv~i~s~s~~e~~~~~~l~~~l~~~g~~~~~~~-~~~~~~--~g--~~~lll~gH~DtVp~------~~~~ 78 (346)
T PRK00466 10 QKAKELLLDLLSIYTPSGNETNATKFFEKISNELNLKLEILP-DSNSFI--LG--EGDILLASHVDTVPG------YIEP 78 (346)
T ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCeEEEec-CCCcEe--cC--CCeEEEEeccccCCC------CCCc
Confidence 568899999999999999999999999999999999987643 356653 22 368999999999994 2444
Q ss_pred cC-CCceecCCc-h--HHHHHHHHHHHHHHhccCCCCceEEEEEEcCCCCc-chHHHHHHhCCCCCcceEEEEccCCCCC
Q 023049 130 KV-PGKMHACGH-D--AHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEEGG-GGAKKMLDAGALENVEAIFGLHVSSLFP 204 (288)
Q Consensus 130 ~~-~G~~~g~G~-d--g~~a~~l~a~~~L~~~~~~~~g~v~~i~~~dEE~g-~Ga~~l~~~g~~~~~d~~i~~e~~~~~~ 204 (288)
.+ +|++||+|. | |++|+++.|+++|++.+ .++.|+|++|||.+ .|++++++.+. ++|++++.||+..
T Consensus 79 ~~~~g~iyGrG~~DmKgg~aa~l~a~~~l~~~~----~~i~~~~~~dEE~g~~G~~~l~~~~~--~~d~~i~~ep~~~-- 150 (346)
T PRK00466 79 KIEGEVIYGRGAVDAKGPLISMIIAAWLLNEKG----IKVMVSGLADEESTSIGAKELVSKGF--NFKHIIVGEPSNG-- 150 (346)
T ss_pred eeeCCEEEecCccccchHHHHHHHHHHHHHHcC----CCEEEEEEcCcccCCccHHHHHhcCC--CCCEEEEcCCCCC--
Confidence 43 689999995 4 88999999999998764 35899999999987 59999999873 4799999998641
Q ss_pred cceEEeeccccccceeEEEEEEEeccccCCCCCCCCcHHHHHHHHHHHHHHHhhcccCCCCCceEEEEEEecCCCCCccc
Q 023049 205 VGTVASRPGPTLAAGGFFEAVINGKGGHAAIPQHTIDPIVAASNVIVSLQHLVSREADPLDSQVVVSLMSDLLYEPHKTD 284 (288)
Q Consensus 205 ~g~v~~~~g~~~~G~~~~~i~v~G~~aHas~P~~g~NAI~~~~~~i~~l~~~~~~~~~~~~~~t~~v~~I~gG~~~n~~~ 284 (288)
..+.. + .+|..+++|+++|+++|+|.|+ .|||..+++++.+|+++. .+....++|+|.|+||..+|++|
T Consensus 151 -~~i~~--~--~kG~~~~~i~v~G~~~Has~p~--~nAi~~~~~~l~~l~~~~----~~~~~~t~~~~~i~gG~~~NvvP 219 (346)
T PRK00466 151 -TDIVV--E--YRGSIQLDIMCEGTPEHSSSAK--SNLIVDISKKIIEVYKQP----ENYDKPSIVPTIIRAGESYNVTP 219 (346)
T ss_pred -CceEE--E--eeEEEEEEEEEEeeccccCCCC--cCHHHHHHHHHHHHHhcc----ccCCCCcceeeEEecCCcCcccC
Confidence 22332 2 3589999999999999999986 599999999999887642 22345789999999999999999
Q ss_pred cc
Q 023049 285 RK 286 (288)
Q Consensus 285 ~~ 286 (288)
+.
T Consensus 220 ~~ 221 (346)
T PRK00466 220 AK 221 (346)
T ss_pred Cc
Confidence 85
No 38
>TIGR01886 dipeptidase dipeptidase PepV. This model represents a small clade of dipeptidase enzymes which are members of the larger M25 subfamily of metalloproteases. Two characterized enzymes are included in the seed. One, from Lactococcus lactis has been shown to act on a wide range of dipeptides, but not larger peptides. The enzyme from Lactobacillus delbrueckii was originally characterized as a Xaa-His dipeptidase, specifically a carnosinase (beta-Ala-His) by complementation of an E. coli mutant. Further study, including the crystallization of the enzyme, has shown it to also be a non-specific dipeptidase. This group also includes enzymes from Streptococcus and Enterococcus.
Probab=100.00 E-value=8.5e-32 Score=260.66 Aligned_cols=232 Identities=15% Similarity=0.089 Sum_probs=173.7
Q ss_pred HHHHhcCCCcHHHHHHHHHHhHhCCCCCC------------ChHHHHHHHHHHHHhCCCCeEeecCCceEEEEECC-CCC
Q 023049 39 FLDFAKKPEIFYWMVNIRRKIHENPELGF------------QEFETSKLIRAELDQMGIPYKFPVAVTGVVGYIGT-GQP 105 (288)
Q Consensus 39 i~~~~~~~~~~~~li~~~~~L~~iPs~s~------------~E~~~~~~i~~~l~~~G~~~~~~~~~~nvia~~~~-~~~ 105 (288)
+.+++++++ +++++++++|++|||++. .+.++++++.++|+++||+++... |+++.+.. +++
T Consensus 4 ~~~~i~~~~--~~~~~~l~~lv~ipS~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~G~~~~~~~---~~~~~~~~~~~~ 78 (466)
T TIGR01886 4 FKEEVEARK--DALLEDLEELLRIDSSEDLENATEEYPFGPGPVDALTKFLSFAERDGFTTKNFD---NYAGHVEYGAGD 78 (466)
T ss_pred HHHHHHHhH--HHHHHHHHHHhCCCCcCCCCCCCccCCCChhHHHHHHHHHHHHHHCCCeEEEec---CCceeEEecCCC
Confidence 567777777 899999999999999864 356789999999999999987532 44444322 235
Q ss_pred cEEEEEeecccccCCC-CCCCCccccC-CCceecCCc-h--HHHHHHHHHHHHHHhccCCCCceEEEEEEcCCCCc-chH
Q 023049 106 PFVALRADMDALAMEE-SVEWEHKSKV-PGKMHACGH-D--AHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEEGG-GGA 179 (288)
Q Consensus 106 ~~i~l~aH~DtVP~~~-~~~~pf~~~~-~G~~~g~G~-d--g~~a~~l~a~~~L~~~~~~~~g~v~~i~~~dEE~g-~Ga 179 (288)
|+|+|.|||||||+++ |+.+||.+++ +|++||||. | |++++++.|+++|++.+..++++|.|+|++|||.| .|+
T Consensus 79 ~~l~~~gH~DvVp~~~~W~~~Pf~~~~~dg~lyGRG~~D~Kg~~~a~l~a~~~l~~~~~~~~~~i~~~~~~dEE~g~~g~ 158 (466)
T TIGR01886 79 ERLGIIGHMDVVPAGEGWTRDPFEPEIDEGRIYARGASDDKGPSLAAYYAMKILKELGLPPSKKIRFVVGTNEETGWVDM 158 (466)
T ss_pred CEEEEEeecccCCCCCCCcCCCCCeEEECCEEEecCccccchHHHHHHHHHHHHHHhCCCCCCCEEEEEECccccCcccH
Confidence 8999999999999864 7888999986 689999995 3 88999999999999988888999999999999998 599
Q ss_pred HHHHHhCCCCCcceEEE---------EccCCCCCcceEEee-----------------------------cc--------
Q 023049 180 KKMLDAGALENVEAIFG---------LHVSSLFPVGTVASR-----------------------------PG-------- 213 (288)
Q Consensus 180 ~~l~~~g~~~~~d~~i~---------~e~~~~~~~g~v~~~-----------------------------~g-------- 213 (288)
+++++.+. .+|++++ .|++... -.+..+ .+
T Consensus 159 ~~~~~~~~--~~d~~~~~d~~~~~~~ge~g~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~i~~~~~~~~~~ 234 (466)
T TIGR01886 159 DYYFKHEE--TPDFGFSPDAEFPIINGEKGNFT--LELSFKGDNKGDYVLDSFKAGLAENMVPQVARAVISGPDAEALKA 234 (466)
T ss_pred HHHHhcCc--CCCEEEECCCCceeEEEecceEE--EEEEEecCCCCceeEEEEEcCCcCCccCCeeEEEEecCCHHHHHH
Confidence 99998764 2566533 3332100 000000 00
Q ss_pred -----ccccce---------eEEEEEEEeccccCCCCCCCCcHHHHHHHHHHHH----------HHHhh-----------
Q 023049 214 -----PTLAAG---------GFFEAVINGKGGHAAIPQHTIDPIVAASNVIVSL----------QHLVS----------- 258 (288)
Q Consensus 214 -----~~~~G~---------~~~~i~v~G~~aHas~P~~g~NAI~~~~~~i~~l----------~~~~~----------- 258 (288)
..++|. .|++|+++|+++|+|.|+.|+|||..|+++|..+ +.+..
T Consensus 235 ~~~~~~~~kg~~~~~~~~~~~~~~i~v~G~~aH~s~P~~G~NAi~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 314 (466)
T TIGR01886 235 AYESFLADKASLDGSFEINDESATIVLIGKGAHGAAPQVGINSATFLALFLNQYAFAGGAKNFIHFLAEVEHEDFYGEKL 314 (466)
T ss_pred HHHHHHhhccCceEEEEEeCCEEEEEEEeeEcccCCCCCCcCHHHHHHHHHHhccCChhHHHHHHHHHHhcCCCCCcccC
Confidence 001222 2799999999999999999999999999988772 22211
Q ss_pred ---cccCCCCCceEEEEEEecCCC
Q 023049 259 ---READPLDSQVVVSLMSDLLYE 279 (288)
Q Consensus 259 ---~~~~~~~~~t~~v~~I~gG~~ 279 (288)
...+..+..++|+|+|+||..
T Consensus 315 ~~~~~~~~~g~~S~nvgvI~gG~~ 338 (466)
T TIGR01886 315 GIAFHDELMGDLAMNAGMFDFDHA 338 (466)
T ss_pred CCcccccCcCceEEEeEEEEEecC
Confidence 011224567999999999965
No 39
>PRK09104 hypothetical protein; Validated
Probab=100.00 E-value=1.7e-31 Score=258.43 Aligned_cols=214 Identities=13% Similarity=0.135 Sum_probs=172.8
Q ss_pred hhHHHHHhcCCCcHHHHHHHHHHhHhCCCCCCCh------HHHHHHHHHHHHhCCCCeEee--cCCceEEEEECCC--CC
Q 023049 36 PVKFLDFAKKPEIFYWMVNIRRKIHENPELGFQE------FETSKLIRAELDQMGIPYKFP--VAVTGVVGYIGTG--QP 105 (288)
Q Consensus 36 ~~~i~~~~~~~~~~~~li~~~~~L~~iPs~s~~E------~~~~~~i~~~l~~~G~~~~~~--~~~~nvia~~~~~--~~ 105 (288)
..++.++++.++ +++++++++|++|||.+++| .++++||.++|+++||+++.. .+++||++++++. .+
T Consensus 5 ~~~~~~~~~~~~--~~~~~~L~~lv~i~Svs~~~~~~~~~~~~~~~l~~~l~~~G~~v~~~~~~~~~~l~a~~~g~~~~~ 82 (464)
T PRK09104 5 LDPVLDHIDANL--DASLERLFALLRIPSISTDPAYAADCRKAADWLVADLASLGFEASVRDTPGHPMVVAHHEGPTGDA 82 (464)
T ss_pred HHHHHHHHHHhH--HHHHHHHHHHhcCCCCCCCccchHHHHHHHHHHHHHHHHCCCeEEEEecCCCCEEEEEecCCCCCC
Confidence 446899999988 99999999999999999764 789999999999999998753 3467999999752 36
Q ss_pred cEEEEEeecccccCCC---CCCCCccccCC-C-----ceecCCc---hHHHHHHHHHHHHHHhccCCCCceEEEEEEcCC
Q 023049 106 PFVALRADMDALAMEE---SVEWEHKSKVP-G-----KMHACGH---DAHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAE 173 (288)
Q Consensus 106 ~~i~l~aH~DtVP~~~---~~~~pf~~~~~-G-----~~~g~G~---dg~~a~~l~a~~~L~~~~~~~~g~v~~i~~~dE 173 (288)
|+|+|.||+||||+++ |+.+||++++. | ++||||. +|+++++|.|++.|++.+..+.++|.|+|++||
T Consensus 83 ~~lll~gH~DvVp~~~~~~W~~~Pf~~~~~~~~~~~~~lyGRG~~D~Kg~laa~l~a~~~l~~~~~~~~~~i~~~~~~dE 162 (464)
T PRK09104 83 PHVLFYGHYDVQPVDPLDLWESPPFEPRIKETPDGRKVIVARGASDDKGQLMTFVEACRAWKAVTGSLPVRVTILFEGEE 162 (464)
T ss_pred CEEEEEecccCCCCCCcccCCCCCCcceEecCcCCcceEEEecccCCcHHHHHHHHHHHHHHHhcCCCCCcEEEEEECcc
Confidence 9999999999999853 67789998753 3 4999995 389999999999999876678889999999999
Q ss_pred CCc-chHHHHHHhCC-CCCcceEEEEccCCCCC-cceEEeeccccccceeEEEEEEEe--ccccCCC-CCCCCcHHHHHH
Q 023049 174 EGG-GGAKKMLDAGA-LENVEAIFGLHVSSLFP-VGTVASRPGPTLAAGGFFEAVING--KGGHAAI-PQHTIDPIVAAS 247 (288)
Q Consensus 174 E~g-~Ga~~l~~~g~-~~~~d~~i~~e~~~~~~-~g~v~~~~g~~~~G~~~~~i~v~G--~~aHas~-P~~g~NAI~~~~ 247 (288)
|.| .|...++.... ....|++|+.|++...+ ...+.. + .+|..+|+++++| +++|+|. |+.|.|||..++
T Consensus 163 E~g~~g~~~~l~~~~~~~~~d~~iv~E~~~~~~~~~~i~~--~--~kG~~~~~l~v~g~~~~~Hss~~~~~g~nai~~~~ 238 (464)
T PRK09104 163 ESGSPSLVPFLEANAEELKADVALVCDTGMWDRETPAITT--S--LRGLVGEEVTITAADRDLHSGLFGGAAANPIRVLT 238 (464)
T ss_pred ccCCccHHHHHHhhHHhcCCCEEEEeCCCCCCCCCeEEEe--e--cCCeEEEEEEEEeCCCCccccccCCccCCHHHHHH
Confidence 997 46666665421 11469999999753111 123332 2 4689999999999 7899995 688999999999
Q ss_pred HHHHHHHH
Q 023049 248 NVIVSLQH 255 (288)
Q Consensus 248 ~~i~~l~~ 255 (288)
+++.+|++
T Consensus 239 ~~l~~l~~ 246 (464)
T PRK09104 239 RILAGLHD 246 (464)
T ss_pred HHHHhccC
Confidence 99999865
No 40
>PRK04443 acetyl-lysine deacetylase; Provisional
Probab=100.00 E-value=2.5e-31 Score=248.22 Aligned_cols=214 Identities=15% Similarity=0.148 Sum_probs=172.6
Q ss_pred HHHHHHHHHhHhCCCCCCChHHHHHHHHHHHHhCCCCeEeecCCceEEEEECCCCCcEEEEEeecccccCCCCCCCCccc
Q 023049 50 YWMVNIRRKIHENPELGFQEFETSKLIRAELDQMGIPYKFPVAVTGVVGYIGTGQPPFVALRADMDALAMEESVEWEHKS 129 (288)
Q Consensus 50 ~~li~~~~~L~~iPs~s~~E~~~~~~i~~~l~~~G~~~~~~~~~~nvia~~~~~~~~~i~l~aH~DtVP~~~~~~~pf~~ 129 (288)
+++++++++|++|||++++|.++++|+.++|+++|++++... ..|++++++++ +|+|+|.||+||||.. .||+
T Consensus 6 ~~~~~~l~~Lv~i~s~s~~e~~~~~~l~~~l~~~G~~~~~~~-~~n~i~~~~~~-~~~l~~~~H~DtVp~~----~p~~- 78 (348)
T PRK04443 6 LEARELLKGLVEIPSPSGEEAAAAEFLVEFMESHGREAWVDE-AGNARGPAGDG-PPLVLLLGHIDTVPGD----IPVR- 78 (348)
T ss_pred HHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHcCCEEEEcC-CCcEEEEcCCC-CCEEEEEeeccccCCC----CCcE-
Confidence 679999999999999999999999999999999999987643 46999998543 5899999999999952 4664
Q ss_pred cCCCceecCCc---hHHHHHHHHHHHHHHhccCCCCceEEEEEEcCCCCcc-hHHHHHHhCCCCCcceEEEEccCCCCCc
Q 023049 130 KVPGKMHACGH---DAHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEEGGG-GAKKMLDAGALENVEAIFGLHVSSLFPV 205 (288)
Q Consensus 130 ~~~G~~~g~G~---dg~~a~~l~a~~~L~~~~~~~~g~v~~i~~~dEE~g~-Ga~~l~~~g~~~~~d~~i~~e~~~~~~~ 205 (288)
..+|++||+|. +|++++++.|+++| +.+++++|.|+|++|||.++ |...++.++. .+|++|+.||+..
T Consensus 79 ~~~g~iyGrG~~D~Kg~~aa~l~A~~~l---~~~~~~~i~~~~~~dEE~g~~~~~~~l~~~~--~~d~~iv~Ept~~--- 150 (348)
T PRK04443 79 VEDGVLWGRGSVDAKGPLAAFAAAAARL---EALVRARVSFVGAVEEEAPSSGGARLVADRE--RPDAVIIGEPSGW--- 150 (348)
T ss_pred eeCCeEEeecccccccHHHHHHHHHHHh---cccCCCCEEEEEEcccccCChhHHHHHHhcc--CCCEEEEeCCCCc---
Confidence 34699999995 48999999999998 34688999999999999983 5555555553 5799999998641
Q ss_pred ceEEeeccccccceeEEEEEEEeccccCCCCCCCCcHHHHHHHHHHHHHHHhhc---ccCCCCCceEEEEEEecCCCCCc
Q 023049 206 GTVASRPGPTLAAGGFFEAVINGKGGHAAIPQHTIDPIVAASNVIVSLQHLVSR---EADPLDSQVVVSLMSDLLYEPHK 282 (288)
Q Consensus 206 g~v~~~~g~~~~G~~~~~i~v~G~~aHas~P~~g~NAI~~~~~~i~~l~~~~~~---~~~~~~~~t~~v~~I~gG~~~n~ 282 (288)
+.+.. + ++|..+++++++|+++|+|.| |+|||..+++++..|+++... .....+..++|++.|+ ..+|.
T Consensus 151 ~~i~~--~--~kG~~~~~l~~~G~~~Hss~~--g~NAi~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~i~--~~~n~ 222 (348)
T PRK04443 151 DGITL--G--YKGRLLVTYVATSESFHSAGP--EPNAAEDAIEWWLAVEAWFEANDGRERVFDQVTPKLVDFD--SSSDG 222 (348)
T ss_pred cceee--e--cccEEEEEEEEEeCCCccCCC--CCCHHHHHHHHHHHHHHHHhcCccccccccccceeeeEEe--cCCCC
Confidence 12332 2 358999999999999999988 799999999999999886431 1222445789999999 46798
Q ss_pred cccc
Q 023049 283 TDRK 286 (288)
Q Consensus 283 ~~~~ 286 (288)
+|+.
T Consensus 223 iP~~ 226 (348)
T PRK04443 223 LTVE 226 (348)
T ss_pred CCce
Confidence 8864
No 41
>PRK15026 aminoacyl-histidine dipeptidase; Provisional
Probab=99.98 E-value=1.3e-30 Score=252.95 Aligned_cols=217 Identities=17% Similarity=0.152 Sum_probs=171.9
Q ss_pred HHHHHHHHHhHhCCCCCCChHHHHHHHHHHHHhCCCCeEeecCCceEEEEECC--C--CCcEEEEEeecccccCCC----
Q 023049 50 YWMVNIRRKIHENPELGFQEFETSKLIRAELDQMGIPYKFPVAVTGVVGYIGT--G--QPPFVALRADMDALAMEE---- 121 (288)
Q Consensus 50 ~~li~~~~~L~~iPs~s~~E~~~~~~i~~~l~~~G~~~~~~~~~~nvia~~~~--~--~~~~i~l~aH~DtVP~~~---- 121 (288)
+++++++++|++||++|++|.++++||.++++++|++++++. ..|++++.++ + ..|.|+|.|||||||+++
T Consensus 10 ~~~~~~l~~Lv~ips~S~~e~~~~~~l~~~~~~~G~~~~~d~-~gnvi~~~~~~~g~~~~~~v~l~gH~DtV~~~~~~~~ 88 (485)
T PRK15026 10 QPLWDIFAKICSIPHPSYHEEQLAEYIVGWAKEKGFHVERDQ-VGNILIRKPATAGMENRKPVVLQAHLDMVPQKNNDTV 88 (485)
T ss_pred HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCCEEEEEe-cCeEEEEEcCCCCCCCCCEEEEEeeecccCCCCCCcc
Confidence 568999999999999999999999999999999999988753 4699888743 2 358999999999999753
Q ss_pred --CCCCCccccC-CCceecCCc----h--HHHHHHHHHHHHHHhccCCCCceEEEEEEcCCCCc-chHHHHHHhCCCCCc
Q 023049 122 --SVEWEHKSKV-PGKMHACGH----D--AHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEEGG-GGAKKMLDAGALENV 191 (288)
Q Consensus 122 --~~~~pf~~~~-~G~~~g~G~----d--g~~a~~l~a~~~L~~~~~~~~g~v~~i~~~dEE~g-~Ga~~l~~~g~~~~~ 191 (288)
|+.+||+..+ +|++||+|. | +++|++|.+ |++.+. .+++|.++|++|||.| .|++.+.. +.+ +.
T Consensus 89 ~~w~~~P~~~~i~~~~l~g~Gt~lgaD~k~gva~~l~~---l~~~~~-~~~~i~~l~t~dEE~G~~ga~~l~~-~~~-~~ 162 (485)
T PRK15026 89 HDFTKDPIQPYIDGEWVKARGTTLGADNGIGMASALAV---LADENV-VHGPLEVLLTMTEEAGMDGAFGLQS-NWL-QA 162 (485)
T ss_pred ccCCCCCceEEEcCCEEEeCCccccCccHHHHHHHHHH---HHhCCC-CCCCEEEEEEcccccCcHhHHHhhh-ccC-Cc
Confidence 4567998765 578988885 4 455555544 455443 4889999999999998 59999865 333 57
Q ss_pred ceEEEEccCCCCCcceEEe-ecc-------------ccccceeEEEEEEEe-ccccCC-CCCCCC-cHHHHHHHHHHHHH
Q 023049 192 EAIFGLHVSSLFPVGTVAS-RPG-------------PTLAAGGFFEAVING-KGGHAA-IPQHTI-DPIVAASNVIVSLQ 254 (288)
Q Consensus 192 d~~i~~e~~~~~~~g~v~~-~~g-------------~~~~G~~~~~i~v~G-~~aHas-~P~~g~-NAI~~~~~~i~~l~ 254 (288)
+++|++||+. .|.+.. .+| ...+|..+|+|+++| +++||+ .|++|+ |||..++++|.++.
T Consensus 163 ~~~i~~e~~~---~g~l~~g~~G~~~~~~~~~~~r~~~~~g~~~~~i~v~Gl~ggHsG~~i~~g~~nAi~~la~~l~~~~ 239 (485)
T PRK15026 163 DILINTDSEE---EGEIYMGCAGGIDFTSNLHLDREAVPAGFETFKLTLKGLKGGHSGGEIHVGLGNANKLLVRFLAGHA 239 (485)
T ss_pred CEEEEeCCCC---CCeEEEeCCCcceEEEEEEEEEEecCCCceEEEEEEECCCCcCChHHHCCCCccHHHHHHHHHHHhH
Confidence 9999999863 233321 111 011467899999999 999999 899999 99999999998844
Q ss_pred HHhhcccCCCCCceEEEEEEecCCCCCccccc
Q 023049 255 HLVSREADPLDSQVVVSLMSDLLYEPHKTDRK 286 (288)
Q Consensus 255 ~~~~~~~~~~~~~t~~v~~I~gG~~~n~~~~~ 286 (288)
...++|++.|+||++.|.+|+.
T Consensus 240 ----------~~~~~~v~~i~GG~~~NaIp~~ 261 (485)
T PRK15026 240 ----------EELDLRLIDFNGGTLRNAIPRE 261 (485)
T ss_pred ----------hhCCeEEEEEeCCCccCCCCCC
Confidence 1367999999999999999985
No 42
>PRK13381 peptidase T; Provisional
Probab=99.97 E-value=1.6e-30 Score=247.41 Aligned_cols=216 Identities=18% Similarity=0.148 Sum_probs=167.7
Q ss_pred HHHHHHHhHhCCCCCC----------ChHHHHHHHHHHHHhCCCCeEeecCCceEEEEECCC-CC-cEEEEEeecccccC
Q 023049 52 MVNIRRKIHENPELGF----------QEFETSKLIRAELDQMGIPYKFPVAVTGVVGYIGTG-QP-PFVALRADMDALAM 119 (288)
Q Consensus 52 li~~~~~L~~iPs~s~----------~E~~~~~~i~~~l~~~G~~~~~~~~~~nvia~~~~~-~~-~~i~l~aH~DtVP~ 119 (288)
+++.+++|++|||.++ .|.++++||.++|+++|++.+..++++||++++++. ++ |+|+|+|||||||+
T Consensus 3 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~nvi~~~~g~~~~~~~lll~~H~D~Vp~ 82 (404)
T PRK13381 3 LTDRFFRYLKVNSQSDAASGTLPSTPGQHELAKLLADELRELGLEDIVIDEHAIVTAKLPGNTPGAPRIGFIAHLDTVDV 82 (404)
T ss_pred HHHHhHhhEEEeccCCCCCCCCcCChhHHHHHHHHHHHHHHcCCCcEEEcCCeEEEEEEecCCCCCCeEEEEEEecCCCc
Confidence 6778899999999987 478999999999999999755545678999999753 44 89999999999998
Q ss_pred CCC-CCC----Cccc-------------------c-----CCCceecCCc-------hHHHHHHHHHHHHHHhccCCCCc
Q 023049 120 EES-VEW----EHKS-------------------K-----VPGKMHACGH-------DAHVAMLLGAAKMLQVFRHEIKG 163 (288)
Q Consensus 120 ~~~-~~~----pf~~-------------------~-----~~G~~~g~G~-------dg~~a~~l~a~~~L~~~~~~~~g 163 (288)
++. ... ||+. . .+|++||+|+ ++++|++|.|++.|++.+ .+++
T Consensus 83 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GrG~~~~g~DmKgg~aa~l~a~~~l~~~~-~~~g 161 (404)
T PRK13381 83 GLSPDIHPQILRFDGGDLCLNAEQGIWLRTAEHPELLNYQGEDIIFSDGTSVLGADNKAAIAVVMTLLENLTENE-VEHG 161 (404)
T ss_pred cCCCCcCcEEEecCCCceecCCccceeechHhChhHHhccCCcEEeCCCccccccccHHHHHHHHHHHHHHHhcC-CCCC
Confidence 652 111 1321 1 2456888664 489999999999998874 4688
Q ss_pred eEEEEEEcCCCCc-chHHHHHHhCCCCCcceEEEEccCCCCCcceEEeeccccccceeEEEEEEEeccccCC-CCCCCCc
Q 023049 164 TIVLVFQPAEEGG-GGAKKMLDAGALENVEAIFGLHVSSLFPVGTVASRPGPTLAAGGFFEAVINGKGGHAA-IPQHTID 241 (288)
Q Consensus 164 ~v~~i~~~dEE~g-~Ga~~l~~~g~~~~~d~~i~~e~~~~~~~g~v~~~~g~~~~G~~~~~i~v~G~~aHas-~P~~g~N 241 (288)
+|.|+|++|||.+ .|+++++.+++ .+|++++.|... + +.+.. + .+|..|++|+++|+++|++ .|+.|+|
T Consensus 162 ~i~~~~~~dEE~g~~G~~~~~~~~~--~~d~~~~~~~~~--~-~~i~~--~--~~G~~~~~v~v~Gk~aHa~~~p~~g~N 232 (404)
T PRK13381 162 DIVVAFVPDEEIGLRGAKALDLARF--PVDFAYTIDCCE--L-GEVVY--E--NFNAASAEITITGVTAHPMSAKGVLVN 232 (404)
T ss_pred CEEEEEEcccccccccHHHHHHhcC--CCCEEEEecCCC--c-ceEEE--e--cCcceEEEEEEEeEecCCCCCcccCcC
Confidence 9999999999998 69999987653 368888876542 2 34433 2 3578999999999999988 5999999
Q ss_pred HHHHHHHHHHHHHHHhhcccCCCCCceEEEEEEecC
Q 023049 242 PIVAASNVIVSLQHLVSREADPLDSQVVVSLMSDLL 277 (288)
Q Consensus 242 AI~~~~~~i~~l~~~~~~~~~~~~~~t~~v~~I~gG 277 (288)
||..+++++.+|+++..+........++|++.|+|+
T Consensus 233 AI~~a~~~i~~l~~~~~~~~~~~~~~~i~v~~i~g~ 268 (404)
T PRK13381 233 PILMANDFISHFPRQETPEHTEGREGYIWVNDLQGN 268 (404)
T ss_pred HHHHHHHHHHhCCccCCCCCCCCcccEEEEEeEEeC
Confidence 999999999999886433322223457999999986
No 43
>PRK05469 peptidase T; Provisional
Probab=99.97 E-value=1.4e-30 Score=248.11 Aligned_cols=219 Identities=15% Similarity=0.110 Sum_probs=165.6
Q ss_pred HHHHHHHHHhHhCCCCCCC----------hHHHHHHHHHHHHhCCCCeEeecCCceEEEEECCC---CCcEEEEEeeccc
Q 023049 50 YWMVNIRRKIHENPELGFQ----------EFETSKLIRAELDQMGIPYKFPVAVTGVVGYIGTG---QPPFVALRADMDA 116 (288)
Q Consensus 50 ~~li~~~~~L~~iPs~s~~----------E~~~~~~i~~~l~~~G~~~~~~~~~~nvia~~~~~---~~~~i~l~aH~Dt 116 (288)
+.+++.+++|++|||.+.+ |.++++||+++|+++|++....+..+||++++++. ++|+|+|+|||||
T Consensus 2 ~~~~~~l~~~~~i~s~s~~~~~~~~~~~~~~~~a~~l~~~l~~~G~~~~~~~~~~~v~~~~~g~~~~~~~~i~l~~H~D~ 81 (408)
T PRK05469 2 DKLLERFLRYVKIDTQSDENSTTVPSTEGQWDLAKLLVEELKELGLQDVTLDENGYVMATLPANVDKDVPTIGFIAHMDT 81 (408)
T ss_pred chHHHHHHhhEEeecccCCCCCCCCCCHHHHHHHHHHHHHHHHcCCCeEEECCCeEEEEEecCCCCCCCCeEEEEEeccC
Confidence 4588999999999999977 89999999999999999733333456899999763 3599999999999
Q ss_pred ccCCCC-C--------------------CCCccccC--------CCceec-------CCchHHHHHHHHHHHHHHhccCC
Q 023049 117 LAMEES-V--------------------EWEHKSKV--------PGKMHA-------CGHDAHVAMLLGAAKMLQVFRHE 160 (288)
Q Consensus 117 VP~~~~-~--------------------~~pf~~~~--------~G~~~g-------~G~dg~~a~~l~a~~~L~~~~~~ 160 (288)
||..+. . .|+|.+.. ++.+|+ +++++++|++++|+++|++.+..
T Consensus 82 vp~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~rG~~~lg~D~Kgglaa~l~a~~~l~~~~~~ 161 (408)
T PRK05469 82 APDFSGKNVKPQIIENYDGGDIALGDGNEVLSPAEFPELKNYIGQTLITTDGTTLLGADDKAGIAEIMTALEYLIAHPEI 161 (408)
T ss_pred CCCCCCCCCCCEEeccCCCcceecCCCceEechHhCchHHhccCCCEEEcCCCEeecccchHHHHHHHHHHHHHHhCCCC
Confidence 987431 1 12222221 123444 44568999999999999987666
Q ss_pred CCceEEEEEEcCCCCcchHHHHHHhCCCCCcceEEEEccCCCCCcceEEeeccccccceeEEEEEEEeccccCC-CCCCC
Q 023049 161 IKGTIVLVFQPAEEGGGGAKKMLDAGALENVEAIFGLHVSSLFPVGTVASRPGPTLAAGGFFEAVINGKGGHAA-IPQHT 239 (288)
Q Consensus 161 ~~g~v~~i~~~dEE~g~Ga~~l~~~g~~~~~d~~i~~e~~~~~~~g~v~~~~g~~~~G~~~~~i~v~G~~aHas-~P~~g 239 (288)
++++|.|+|++|||.+.|++.++..+. ..++.++.++.+ .|.+... ..|..+|+|+++|+++|++ .|+.|
T Consensus 162 ~~g~v~~~f~~dEE~g~Ga~~~~~~~~--~~~~~~~~~~~~---~g~~~~~----~~g~~~~~i~v~Gk~~Ha~~~p~~g 232 (408)
T PRK05469 162 KHGDIRVAFTPDEEIGRGADKFDVEKF--GADFAYTVDGGP---LGELEYE----NFNAASAKITIHGVNVHPGTAKGKM 232 (408)
T ss_pred CCCCEEEEEecccccCCCHHHhhhhhc--CCcEEEEecCCC---cceEEec----cCceeEEEEEEeeecCCCCCCcccc
Confidence 789999999999998888988875542 356777666533 4554432 2467899999999999987 58999
Q ss_pred CcHHHHHHHHHHHHHHHhhcccCCCCCceEEEEEEecC
Q 023049 240 IDPIVAASNVIVSLQHLVSREADPLDSQVVVSLMSDLL 277 (288)
Q Consensus 240 ~NAI~~~~~~i~~l~~~~~~~~~~~~~~t~~v~~I~gG 277 (288)
+|||..+++++..|+++..+........++|+|.|+||
T Consensus 233 ~nAi~~~~~~i~~l~~~~~~~~~~~~~~~i~~g~i~gg 270 (408)
T PRK05469 233 VNALLLAADFHAMLPADETPETTEGYEGFYHLTSIKGT 270 (408)
T ss_pred cCHHHHHHHHHHhCCCCCCCCCCCCceEEEEEEEEEEc
Confidence 99999999999998876432222222356899999998
No 44
>COG0624 ArgE Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases [Amino acid transport and metabolism]
Probab=99.97 E-value=3.3e-30 Score=245.39 Aligned_cols=239 Identities=20% Similarity=0.242 Sum_probs=184.3
Q ss_pred HHHhcCCCcHHHHHHHHHHhHhCCCCC-CChHHHHHHHHHHHHhCCCCeEeec-C----CceEEEEECCCCC-cEEEEEe
Q 023049 40 LDFAKKPEIFYWMVNIRRKIHENPELG-FQEFETSKLIRAELDQMGIPYKFPV-A----VTGVVGYIGTGQP-PFVALRA 112 (288)
Q Consensus 40 ~~~~~~~~~~~~li~~~~~L~~iPs~s-~~E~~~~~~i~~~l~~~G~~~~~~~-~----~~nvia~~~~~~~-~~i~l~a 112 (288)
+......+ +++++++++|+++||++ ..|.++++|+.++|+++|+.++... . .+|++++++++.+ |.|+|.|
T Consensus 5 ~~~~~~~~--~~~~~~l~~lv~~~s~s~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~n~~~~~~~~~~~~~l~l~~ 82 (409)
T COG0624 5 LEVSLDLL--DDILELLKELVRIPSVSAGEEAEAAELLAEWLEELGFEVEEDEVGPGPGRPNLVARLGGGDGGPTLLLGG 82 (409)
T ss_pred HHHHHHhh--HHHHHHHHHHhcCCCCCcccchHHHHHHHHHHHHcCCceEEeecCCCCCceEEEEEecCCCCCCeEEEec
Confidence 34444444 77889999999999999 8999999999999999999977642 2 4599999987643 9999999
Q ss_pred ecccccCCC---CCCCCccccC-CCceecCCc-h--HHHHHHHHHHHHHHhccCCCCceEEEEEEcCCCCc-chHHHHHH
Q 023049 113 DMDALAMEE---SVEWEHKSKV-PGKMHACGH-D--AHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEEGG-GGAKKMLD 184 (288)
Q Consensus 113 H~DtVP~~~---~~~~pf~~~~-~G~~~g~G~-d--g~~a~~l~a~~~L~~~~~~~~g~v~~i~~~dEE~g-~Ga~~l~~ 184 (288)
|+||||+++ |+.+||++++ +|++||||. | |.+++++.|++.+.+.+..++++|.++|++|||.+ .|...+++
T Consensus 83 H~DvVP~g~~~~W~~~Pf~~~~~dg~lyGRG~~D~KG~~~a~l~A~~~l~~~~~~~~~~v~~~~~~dEE~g~~~~~~~~~ 162 (409)
T COG0624 83 HLDVVPAGGGEDWTTDPFEPTIKDGKLYGRGAADMKGGLAAALYALSALKAAGGELPGDVRLLFTADEESGGAGGKAYLE 162 (409)
T ss_pred cccccCCCCcccCccCCCccEEECCEEEecCccccchHHHHHHHHHHHHHHhCCCCCeEEEEEEEeccccCCcchHHHHH
Confidence 999999975 6677999886 589999996 3 99999999999999987788899999999999999 47777776
Q ss_pred hCC---CCCcceEEEEccCCCCCcceEEeeccccccceeEEEEEEEeccccCCC--CCCCCcH----HHHHHHHHHHHHH
Q 023049 185 AGA---LENVEAIFGLHVSSLFPVGTVASRPGPTLAAGGFFEAVINGKGGHAAI--PQHTIDP----IVAASNVIVSLQH 255 (288)
Q Consensus 185 ~g~---~~~~d~~i~~e~~~~~~~g~v~~~~g~~~~G~~~~~i~v~G~~aHas~--P~~g~NA----I~~~~~~i~~l~~ 255 (288)
.+. ...+|++|+.||+...+.+.+... + .+|..+++++++|+++|+|. |+.+.|+ +..+.+++..+.+
T Consensus 163 ~~~~~~~~~~d~~i~~E~~~~~~~~~~~~~-~--~kG~~~~~v~v~G~~~Has~~~p~~~~n~i~~a~~~~~~~~~~~~~ 239 (409)
T COG0624 163 EGEEALGIRPDYEIVGEPTLESEGGDIIVV-G--HKGSLWLEVTVKGKAGHASTTPPDLGRNPIHAAIEALAELIEELGD 239 (409)
T ss_pred hcchhhccCCCEEEeCCCCCcccCCCeEEE-c--ceeEEEEEEEEEeecccccccCCcccccHHHHHHHHHHHHHHHhcc
Confidence 653 135799999998321122322221 2 36899999999999999997 9999994 5555555544443
Q ss_pred HhhcccCCCC-CceEEEEEEecCCC--------CCccccc
Q 023049 256 LVSREADPLD-SQVVVSLMSDLLYE--------PHKTDRK 286 (288)
Q Consensus 256 ~~~~~~~~~~-~~t~~v~~I~gG~~--------~n~~~~~ 286 (288)
+.... .. +.++|++.+.+|.. +|++|+.
T Consensus 240 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~nviP~~ 276 (409)
T COG0624 240 LAGEG---FDGPLGLNVGLILAGPGASVNGGDKVNVIPGE 276 (409)
T ss_pred ccccc---ccCCccccccccccCCcccccCCccCceecce
Confidence 32211 22 57788887777766 4999975
No 45
>PRK07079 hypothetical protein; Provisional
Probab=99.97 E-value=5.9e-30 Score=248.01 Aligned_cols=210 Identities=11% Similarity=0.023 Sum_probs=162.4
Q ss_pred hhHHHHHhcCCCcHHHHHHHHHHhHhCCCCCCC---hHHHHHHHH----HHHHhCCCCeEee-----cCCceEEEEECCC
Q 023049 36 PVKFLDFAKKPEIFYWMVNIRRKIHENPELGFQ---EFETSKLIR----AELDQMGIPYKFP-----VAVTGVVGYIGTG 103 (288)
Q Consensus 36 ~~~i~~~~~~~~~~~~li~~~~~L~~iPs~s~~---E~~~~~~i~----~~l~~~G~~~~~~-----~~~~nvia~~~~~ 103 (288)
.+++.++.++ +++++++++|++|||++++ +.++++|+. ++|+++||+++.. .+++||+++++++
T Consensus 7 ~~~~~~~~~~----~~~~~~L~~LV~ipSvs~~~~~~~~~~~~l~~~~~~~l~~~G~~~~~~~~~~~~~~~~vva~~~~~ 82 (469)
T PRK07079 7 IARAAAYFDS----GAFFADLARRVAYRTESQNPDRAPALRAYLTDEIAPALAALGFTCRIVDNPVAGGGPFLIAERIED 82 (469)
T ss_pred HHHHHHhhcc----HHHHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCEEEEEeCCC
Confidence 3456666664 4699999999999999874 456777764 5899999998752 1367999998654
Q ss_pred -CCcEEEEEeecccccCCC--CC--CCCccccC-CCceecCCc---hHHHHHHHHHHHHHHhc-cCCCCceEEEEEEcCC
Q 023049 104 -QPPFVALRADMDALAMEE--SV--EWEHKSKV-PGKMHACGH---DAHVAMLLGAAKMLQVF-RHEIKGTIVLVFQPAE 173 (288)
Q Consensus 104 -~~~~i~l~aH~DtVP~~~--~~--~~pf~~~~-~G~~~g~G~---dg~~a~~l~a~~~L~~~-~~~~~g~v~~i~~~dE 173 (288)
++|+|+|+||+||||.++ |+ .+||..++ +|++||||. +|+++++|+|+++|++. +..+.++|.|+|++||
T Consensus 83 ~~~~~lll~gH~DvVp~~~~~W~~~~~Pf~~~~~dg~lyGRGa~DmKgg~aa~l~A~~~l~~~~~~~~~~~i~~~~~~dE 162 (469)
T PRK07079 83 DALPTVLIYGHGDVVRGYDEQWREGLSPWTLTEEGDRWYGRGTADNKGQHTINLAALEQVLAARGGRLGFNVKLLIEMGE 162 (469)
T ss_pred CCCCEEEEEcccCCCCCChHHhcccCCCCcccccCCEEEEEeccCCcHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECcc
Confidence 468999999999999754 66 48999876 689999995 48999999999998654 4678899999999999
Q ss_pred CCc-chHHHHHHhCC--CCCcceEEEEccCCCCCcc-eEEeeccccccceeEEEEEEEec--cccCCCCCCC--CcHHHH
Q 023049 174 EGG-GGAKKMLDAGA--LENVEAIFGLHVSSLFPVG-TVASRPGPTLAAGGFFEAVINGK--GGHAAIPQHT--IDPIVA 245 (288)
Q Consensus 174 E~g-~Ga~~l~~~g~--~~~~d~~i~~e~~~~~~~g-~v~~~~g~~~~G~~~~~i~v~G~--~aHas~P~~g--~NAI~~ 245 (288)
|.| .|++++++... + +.|++|+.||+...+.. .+.. | ++|..+++|+++|+ +.|++ ++.| .||+..
T Consensus 163 E~g~~G~~~l~~~~~~~~-~~d~~iv~e~~~~~~~~~~i~~--g--~kG~~~~~v~v~G~~~~~hs~-~~~g~~~nai~~ 236 (469)
T PRK07079 163 EIGSPGLAEVCRQHREAL-AADVLIASDGPRLSAERPTLFL--G--SRGAVNFRLRVNLRDGAHHSG-NWGGLLRNPGTV 236 (469)
T ss_pred ccCCccHHHHHHHhHHhc-CCCEEEEeCCCccCCCCeEEEE--e--cceEEEEEEEEeeCCCCCCCC-ccccccCCHHHH
Confidence 998 59999998642 3 47999999886321111 2332 3 46899999999998 44655 4444 799999
Q ss_pred HHHHHHHHHH
Q 023049 246 ASNVIVSLQH 255 (288)
Q Consensus 246 ~~~~i~~l~~ 255 (288)
++.+|.++.+
T Consensus 237 l~~ai~~l~~ 246 (469)
T PRK07079 237 LAHAIASLVD 246 (469)
T ss_pred HHHHHHHhCC
Confidence 9999998853
No 46
>PRK06156 hypothetical protein; Provisional
Probab=99.97 E-value=4.1e-29 Score=244.91 Aligned_cols=206 Identities=17% Similarity=0.152 Sum_probs=154.1
Q ss_pred cCCCcHHHHHHHHHHhHhCCCCCC-----Ch----HHHHHHHHHHHHhCCCCeEeecCCceEE-EEECCCCCcEEEEEee
Q 023049 44 KKPEIFYWMVNIRRKIHENPELGF-----QE----FETSKLIRAELDQMGIPYKFPVAVTGVV-GYIGTGQPPFVALRAD 113 (288)
Q Consensus 44 ~~~~~~~~li~~~~~L~~iPs~s~-----~E----~~~~~~i~~~l~~~G~~~~~~~~~~nvi-a~~~~~~~~~i~l~aH 113 (288)
++++ +++++++++|++|||++. +| .++++||.++|+++|++++.. .++++ +++++...|.|+|+||
T Consensus 42 ~~~~--~~~~~~l~~lv~i~S~~~~~~~~~e~~~~~~~~~~l~~~l~~~G~~~~~~--~~~v~~~~~~g~~~~~l~l~gH 117 (520)
T PRK06156 42 LKYG--AAAIESLRELVAFPTVRVEGVPQHENPEFIGFKKLLKSLARDFGLDYRNV--DNRVLEIGLGGSGSDKVGILTH 117 (520)
T ss_pred hhhH--HHHHHHHHHhcCcCcccCCCCCccCCccHHHHHHHHHHHHHHCCCeEEec--CCeEEEEEecCCCCCeEEEEEe
Confidence 3444 789999999999999864 23 356899999999999998542 23344 6776544589999999
Q ss_pred cccccCC--CCCC-----CCccccC-CCceecCCc---hHHHHHHHHHHHHHHhccCCCCceEEEEEEcCCCCc-chHHH
Q 023049 114 MDALAME--ESVE-----WEHKSKV-PGKMHACGH---DAHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEEGG-GGAKK 181 (288)
Q Consensus 114 ~DtVP~~--~~~~-----~pf~~~~-~G~~~g~G~---dg~~a~~l~a~~~L~~~~~~~~g~v~~i~~~dEE~g-~Ga~~ 181 (288)
|||||++ +|+. +||...+ +|++||+|. |+++++++.|+++|++.+.+++++|.|+|++|||.| .|+++
T Consensus 118 ~DvVp~~~~~W~~~~~~~~Pf~~~~~~g~lyGRG~~D~Kgg~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~g~~G~~~ 197 (520)
T PRK06156 118 ADVVPANPELWVLDGTRLDPFKVTLVGDRLYGRGTEDDKGAIVTALYAMKAIKDSGLPLARRIELLVYTTEETDGDPLKY 197 (520)
T ss_pred cCccCCCCccCccCCccCCCCceEEECCEEEEcCcccchHHHHHHHHHHHHHHHcCCCCCceEEEEEecccccCchhHHH
Confidence 9999985 4666 8999875 689999985 489999999999999888778899999999999997 59999
Q ss_pred HHHhCCCCCcceE---------EEEccCCC-----------------------------CCcc-eEEeeccc--------
Q 023049 182 MLDAGALENVEAI---------FGLHVSSL-----------------------------FPVG-TVASRPGP-------- 214 (288)
Q Consensus 182 l~~~g~~~~~d~~---------i~~e~~~~-----------------------------~~~g-~v~~~~g~-------- 214 (288)
+++.+.. .++. ++.|++.. .|.. .+......
T Consensus 198 ~~~~~~~--~~~~~~~D~~~~~~~~E~~~~~~~i~~~~~~~~~~~~~l~~~~gG~~~n~ip~~a~~~~~~~~~~~~~~~~ 275 (520)
T PRK06156 198 YLERYTP--PDYNITLDAEYPVVTAEKGWGTIMATFPKRAADGKGAEIVAMTGGAFANQIPQTAVATLSGGDPAALAAAL 275 (520)
T ss_pred HHHhcCC--CCeEEeeCCCCceEEEecceEEEEEEecCcCCCCCceeEEEEEcCCcCCCCCCccEEEEecCCHHHHHHHH
Confidence 9887542 2332 34454310 0000 00000000
Q ss_pred ---------ccccee---------EEEEEEEeccccCCCCCCCCcHHHHHHHHHHHHHH
Q 023049 215 ---------TLAAGG---------FFEAVINGKGGHAAIPQHTIDPIVAASNVIVSLQH 255 (288)
Q Consensus 215 ---------~~~G~~---------~~~i~v~G~~aHas~P~~g~NAI~~~~~~i~~l~~ 255 (288)
.++|.. |++|+++|+++|+|.|+.|+|||..++++|.+|++
T Consensus 276 ~~~~~~~~~~~~g~~~~~~~~~~~~~~I~v~Gk~aHsS~P~~G~NAI~~aa~ii~~L~~ 334 (520)
T PRK06156 276 QAAAAAQVKRHGGGFSIDFKRDGKDVTITVTGKSAHSSTPESGVNPVTRLALFLQSLDG 334 (520)
T ss_pred HHHHHHHHhhcccCceEEEEEcCCeEEEEEEeEECCCCCCCCCccHHHHHHHHHHhccc
Confidence 011223 89999999999999999999999999999999975
No 47
>TIGR01887 dipeptidaselike dipeptidase, putative. This model represents a clade of probable zinc dipeptidases, closely related to the characterized non-specific dipeptidase, PepV. Many enzymes in this clade have been given names including the terms "Xaa-His" and "carnosinase" due to the early mis-characterization of the Lactobacillus delbrueckii PepV enzyme. These names are likely too specific.
Probab=99.97 E-value=4.4e-29 Score=240.43 Aligned_cols=225 Identities=13% Similarity=0.124 Sum_probs=164.0
Q ss_pred HHHHHHHHHhHhCCCCCCC------------hHHHHHHHHHHHHhCCCCeEeecCCceEEEE--ECCCCCcEEEEEeecc
Q 023049 50 YWMVNIRRKIHENPELGFQ------------EFETSKLIRAELDQMGIPYKFPVAVTGVVGY--IGTGQPPFVALRADMD 115 (288)
Q Consensus 50 ~~li~~~~~L~~iPs~s~~------------E~~~~~~i~~~l~~~G~~~~~~~~~~nvia~--~~~~~~~~i~l~aH~D 115 (288)
+++++++++|++|||++.+ +.++++|+.++|+++|++++.. .|+++. +++ ..|+|+|+||||
T Consensus 2 ~~~i~ll~~Lv~ipS~s~~~~p~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~---~~~~~~~~~~~-~~~~l~l~gH~D 77 (447)
T TIGR01887 2 DEILEDLKELIRIDSVEDLEEAKEGAPFGEGPKKALDKFLELAKRDGFTTENV---DNYAGYAEYGQ-GEEYLGILGHLD 77 (447)
T ss_pred hHHHHHHHHhcCcCcCCCCCCCCCCCCcchhHHHHHHHHHHHHHHcCceEEEe---cCceEEEEeCC-CCCeEEEEeecC
Confidence 5689999999999998732 4689999999999999998743 244333 332 347999999999
Q ss_pred cccCCC-CCCCCccccC-CCceecCCc---hHHHHHHHHHHHHHHhccCCCCceEEEEEEcCCCCc-chHHHHHHhCCCC
Q 023049 116 ALAMEE-SVEWEHKSKV-PGKMHACGH---DAHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEEGG-GGAKKMLDAGALE 189 (288)
Q Consensus 116 tVP~~~-~~~~pf~~~~-~G~~~g~G~---dg~~a~~l~a~~~L~~~~~~~~g~v~~i~~~dEE~g-~Ga~~l~~~g~~~ 189 (288)
|||+++ |+.+||++.+ +|++||+|. +|++++++.|++.|++.+..++++|.|+|++|||.| .|++++++.....
T Consensus 78 ~Vp~~~~W~~~Pf~~~~~~g~lyGRGa~D~KG~laa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~g~~g~~~~l~~~~~~ 157 (447)
T TIGR01887 78 VVPAGDGWTSPPFEAEIKDGRIYGRGTLDDKGPTIAALYAMKILKELGLKLKKKIRFIFGTDEETGWACIDYYFEHEEAP 157 (447)
T ss_pred CCCCCCCCcCCCCceEEECCEEEECCcccCcHHHHHHHHHHHHHHHcCCCCCCcEEEEEECCcccCcHhHHHHHHhcCCC
Confidence 999854 7788999886 589999995 488999999999999988788999999999999998 4888888763211
Q ss_pred ----Ccce---EEEEccC----------------------CCCCcceE------Ee-ec-------------------cc
Q 023049 190 ----NVEA---IFGLHVS----------------------SLFPVGTV------AS-RP-------------------GP 214 (288)
Q Consensus 190 ----~~d~---~i~~e~~----------------------~~~~~g~v------~~-~~-------------------g~ 214 (288)
..|. +++.+++ .+.+++.+ .+ .+ |.
T Consensus 158 ~~~~~~d~~~~~~~~e~g~~~~~~~v~g~~~~~~~i~~~~~Ge~tn~~p~~a~~~v~~~~~~~~~~~~~~~~~~~~~~g~ 237 (447)
T TIGR01887 158 DIGFTPDAEFPIIYGEKGIVTLEISFKDDTEGDVVLESFKAGEAFNMVPDHATAVISGKELLEVEKEKFVFFIAKELEGS 237 (447)
T ss_pred CEEEeCCCCcceEEEecCeEEEEEEeccCCCCceeEEEEeCCCcCCccCcceEEEEeccchhHHHHHHHHHhhhcCcceE
Confidence 1222 3444432 01111111 11 11 11
Q ss_pred cccceeEEEEEEEeccccCCCCCCCCcHHHHHHHHHHHHH--HHhhc---------------------ccCC-CCCceEE
Q 023049 215 TLAAGGFFEAVINGKGGHAAIPQHTIDPIVAASNVIVSLQ--HLVSR---------------------EADP-LDSQVVV 270 (288)
Q Consensus 215 ~~~G~~~~~i~v~G~~aHas~P~~g~NAI~~~~~~i~~l~--~~~~~---------------------~~~~-~~~~t~~ 270 (288)
..++..+++|+++|+++|+|.|+.|+|||..+++++..++ +...+ ..++ .+.+++|
T Consensus 238 ~~~~~~~~~i~v~G~~aHss~p~~G~NAi~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~t~n 317 (447)
T TIGR01887 238 FEVNDGTATITLEGKSAHGSAPEKGINAATYLALFLAQLNLAGGAKAFLQFLAEYLHEDHYGEKLGIDFHDDVSGDLTMN 317 (447)
T ss_pred EEecCCEEEEEEEeeecccCCCccCccHHHHHHHHHHhccCchhHHHHHHHHHHhcCCCCccccCCCcccCCCcCCcEEE
Confidence 1112237999999999999999999999999999999986 21000 0011 2457899
Q ss_pred EEEEecCC
Q 023049 271 SLMSDLLY 278 (288)
Q Consensus 271 v~~I~gG~ 278 (288)
+|.|+||.
T Consensus 318 vg~I~~g~ 325 (447)
T TIGR01887 318 VGVIDYEN 325 (447)
T ss_pred EEEEEEeC
Confidence 99999985
No 48
>PRK12892 allantoate amidohydrolase; Reviewed
Probab=99.97 E-value=1.7e-29 Score=240.55 Aligned_cols=212 Identities=16% Similarity=0.167 Sum_probs=165.3
Q ss_pred HHHHHHHHHhHhCCC---------CCCChHHHHHHHHHHHHhCCCCeEeecCCceEEEEECCC-CCcEEEEEeecccccC
Q 023049 50 YWMVNIRRKIHENPE---------LGFQEFETSKLIRAELDQMGIPYKFPVAVTGVVGYIGTG-QPPFVALRADMDALAM 119 (288)
Q Consensus 50 ~~li~~~~~L~~iPs---------~s~~E~~~~~~i~~~l~~~G~~~~~~~~~~nvia~~~~~-~~~~i~l~aH~DtVP~ 119 (288)
+++++.+++|.++++ .+++|.++++||.++|+++|++++.. .+.|+++++++. ++|.|+|+|||||||.
T Consensus 10 ~~~~~~~~~~~~~~s~~~g~~~~s~~~~e~~~~~~l~~~l~~~G~~~~~~-~~~nl~a~~~g~~~~~~l~l~gH~DtVp~ 88 (412)
T PRK12892 10 QRVLDDLMELAAIGAAKTGVHRPTYSDAHVAARRRLAAWCEAAGLAVRID-GIGNVFGRLPGPGPGPALLVGSHLDSQNL 88 (412)
T ss_pred HHHHHHHHHHHccCCCCCCeeeCCCCHHHHHHHHHHHHHHHHcCCEEEEc-CCCcEEEEecCCCCCCeEEEEccccCCCC
Confidence 578899999999865 56679999999999999999998874 457999999763 4589999999999997
Q ss_pred CCCCCCCccccCCCceecCCchHHHHHHHHHHHHHHhccCCCCceEEEEEEcCCCCc------chHHHHHHh--------
Q 023049 120 EESVEWEHKSKVPGKMHACGHDAHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEEGG------GGAKKMLDA-------- 185 (288)
Q Consensus 120 ~~~~~~pf~~~~~G~~~g~G~dg~~a~~l~a~~~L~~~~~~~~g~v~~i~~~dEE~g------~Ga~~l~~~-------- 185 (288)
+ |+.+|+ ++++++|.|++.|++.+..++++|.|++++|||.+ .|++++++.
T Consensus 89 ~------------g~~dg~---~Gvaa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~~~~~~~~Gs~~~~~~~~~~~~~~ 153 (412)
T PRK12892 89 G------------GRYDGA---LGVVAGLEAARALNEHGIATRHPLDVVAWCDEEGSRFTPGFLGSRAYAGRLDPADALA 153 (412)
T ss_pred C------------Ccccch---HHHHHHHHHHHHHHHcCCCCCCCeEEEEecCcccccccCccccHHHHHcCCCHHHHHh
Confidence 4 223333 46889999999999988889999999999999984 388888742
Q ss_pred -----------------CCCCCcceEEEEccCCC--------------CCcc---eEEeeccccccceeEEEEEEEeccc
Q 023049 186 -----------------GALENVEAIFGLHVSSL--------------FPVG---TVASRPGPTLAAGGFFEAVINGKGG 231 (288)
Q Consensus 186 -----------------g~~~~~d~~i~~e~~~~--------------~~~g---~v~~~~g~~~~G~~~~~i~v~G~~a 231 (288)
|+ ..|.+++.||+.. .+.+ .+.. .++|..+++|+++|+++
T Consensus 154 ~~~~~~~~~~~~~~~~~g~--~~d~~~~~ep~~~~~~~e~~~~~g~~~e~~~~~~~i~~----~~kG~~~~~i~v~G~~a 227 (412)
T PRK12892 154 ARCRSDGVPLRDALAAAGL--AGRPRPAADRARPKGYLEAHIEQGPVLEQAGLPVGVVT----GIVGIWQYRITVTGEAG 227 (412)
T ss_pred CccCCCCcCHHHHHHHcCC--ChhhcccccccCccEEEEEEeccCHhHhhCCCcEEEEE----EeccceEEEEEEEEECC
Confidence 11 1345556565421 0111 2221 23689999999999999
Q ss_pred cCC-CCC-CCCcHHHHHHHHHHHHHHHhhcccCCCCCceEEEEEEecC-CCCCccccc
Q 023049 232 HAA-IPQ-HTIDPIVAASNVIVSLQHLVSREADPLDSQVVVSLMSDLL-YEPHKTDRK 286 (288)
Q Consensus 232 Has-~P~-~g~NAI~~~~~~i~~l~~~~~~~~~~~~~~t~~v~~I~gG-~~~n~~~~~ 286 (288)
|++ .|+ .|.|||..+++++.+|+++..+.. .+.++|+|.|+|| .++|++|+.
T Consensus 228 Ha~~~p~~~g~nAi~~a~~~i~~l~~~~~~~~---~~~~~~vg~i~gg~~~~NvIP~~ 282 (412)
T PRK12892 228 HAGTTPMALRRDAGLAAAEMIAAIDEHFPRVC---GPAVVTVGRVALDPGSPSIIPGR 282 (412)
T ss_pred CCCCCCcccccCHHHHHHHHHHHHHHHHHhcC---CCcEEEEEEEEecCCCCeEECCe
Confidence 998 575 589999999999999998753322 3479999999987 799999985
No 49
>PRK07205 hypothetical protein; Provisional
Probab=99.97 E-value=3.7e-29 Score=240.86 Aligned_cols=205 Identities=17% Similarity=0.111 Sum_probs=152.7
Q ss_pred HHHHHHHHHhHhCCCCCCCh----------HHHHHHHHHHHHhCCCCeEeecCCceEEEEECCCCCcEEEEEeecccccC
Q 023049 50 YWMVNIRRKIHENPELGFQE----------FETSKLIRAELDQMGIPYKFPVAVTGVVGYIGTGQPPFVALRADMDALAM 119 (288)
Q Consensus 50 ~~li~~~~~L~~iPs~s~~E----------~~~~~~i~~~l~~~G~~~~~~~~~~nvia~~~~~~~~~i~l~aH~DtVP~ 119 (288)
+++++++++|++|||++++| .++++++.++|+++||+++......+++++++.+ +|.|+|+||+||||+
T Consensus 11 ~~~~~~l~~lv~i~S~s~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~g~~-~~~lll~gH~DvVp~ 89 (444)
T PRK07205 11 DACVAAIKTLVSYPSVLNEGENGTPFGQAIQDVLEATLDLCQGLGFKTYLDPKGYYGYAEIGQG-EELLAILCHLDVVPE 89 (444)
T ss_pred HHHHHHHHHHcccccccCCCcCCCCCchhHHHHHHHHHHHHHhCCCEEEEcCCCeEEEEEecCC-CcEEEEEEeeccCCC
Confidence 78999999999999998765 5688899999999999987643344667777533 589999999999998
Q ss_pred CC---CCCCCccccC-CCceecCCc---hHHHHHHHHHHHHHHhccCCCCceEEEEEEcCCCCc-chHHHHHHhCCCC--
Q 023049 120 EE---SVEWEHKSKV-PGKMHACGH---DAHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEEGG-GGAKKMLDAGALE-- 189 (288)
Q Consensus 120 ~~---~~~~pf~~~~-~G~~~g~G~---dg~~a~~l~a~~~L~~~~~~~~g~v~~i~~~dEE~g-~Ga~~l~~~g~~~-- 189 (288)
++ |+.+||++.+ +|++||||. +|+++++|.|+++|++.+..++++|.|+|++|||++ .|++.+++.....
T Consensus 90 ~~~~~W~~~Pf~~~v~dg~lyGRGa~DmKgglaa~l~Al~~l~~~~~~~~~~i~l~~~~dEE~g~~g~~~~~~~~~~~~~ 169 (444)
T PRK07205 90 GDLSDWQTPPFEAVEKDGCLFGRGTQDDKGPSMAALYAVKALLDAGVQFNKRIRFIFGTDEETLWRCMNRYNEVEEQATM 169 (444)
T ss_pred CCcccCCCCCCceEEECCEEEECCcccCcHHHHHHHHHHHHHHHcCCCCCCcEEEEEECCcccCcccHHHHHhCCCCCCe
Confidence 53 6778999875 689999995 489999999999999988888899999999999998 4888887642110
Q ss_pred --Ccc--------------eEEEEccCCCC--Ccc---eE----Eeeccc---------cccc----eeEEEEEEEeccc
Q 023049 190 --NVE--------------AIFGLHVSSLF--PVG---TV----ASRPGP---------TLAA----GGFFEAVINGKGG 231 (288)
Q Consensus 190 --~~d--------------~~i~~e~~~~~--~~g---~v----~~~~g~---------~~~G----~~~~~i~v~G~~a 231 (288)
..| +.++.+|++.. ..| .+ ....|. ...| ..+.+++++|+++
T Consensus 170 ~~~~~~~~~v~~~ekG~~~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~l~~~~~~~g~~~~~~~~~v~v~G~~~ 249 (444)
T PRK07205 170 GFAPDSSFPLTYAEKGLLQAKLVGPGSDQLELEVGQAFNVVPAKASYQGPKLEAVKKELDKLGFEYVVKENEVTVLGKSV 249 (444)
T ss_pred eECCCCCCceEEEEeceEEEEEEeCCccceEEecCCcccccCceeEEEecCHHHHHHHHHhcCceEeecCcEEEEEeEEc
Confidence 112 23444443210 000 00 001111 0012 1234999999999
Q ss_pred cCCCCCCCCcHHHHHHHHHHHHHH
Q 023049 232 HAAIPQHTIDPIVAASNVIVSLQH 255 (288)
Q Consensus 232 Has~P~~g~NAI~~~~~~i~~l~~ 255 (288)
|+|.|+.|+|||..+++++.++++
T Consensus 250 Hss~p~~g~nAi~~~~~~l~~l~~ 273 (444)
T PRK07205 250 HAKDAPQGINAVIRLAKALVVLEP 273 (444)
T ss_pred ccCCCccCcCHHHHHHHHHHhccH
Confidence 999999999999999999988865
No 50
>TIGR01902 dapE-lys-deAc N-acetyl-ornithine/N-acetyl-lysine deacetylase. This clade of mainly archaeal and related bacterial species contains two characterized enzymes, an deacetylase with specificity for both N-acetyl-ornithine and N-acetyl-lysine from Thermus which is found within a lysine biosynthesis operon, and a fusion protein with acetyl-glutamate kinase (an enzyme of ornithine biosynthesis) from Lactobacillus. It is possible that all of the sequences within this clade have dual specificity, or that a mix of specificities have evolved within this clade.
Probab=99.97 E-value=7.4e-29 Score=230.32 Aligned_cols=206 Identities=12% Similarity=0.069 Sum_probs=164.3
Q ss_pred HHHHHhHhCCCCCCChHHHHHHHHHHHHhCCCCeEeecCCceEEEEECCCCCcEEEEEeecccccCCCCCCCCcccc-CC
Q 023049 54 NIRRKIHENPELGFQEFETSKLIRAELDQMGIPYKFPVAVTGVVGYIGTGQPPFVALRADMDALAMEESVEWEHKSK-VP 132 (288)
Q Consensus 54 ~~~~~L~~iPs~s~~E~~~~~~i~~~l~~~G~~~~~~~~~~nvia~~~~~~~~~i~l~aH~DtVP~~~~~~~pf~~~-~~ 132 (288)
+++++|++|||++++|.++++||+++|+++|+++..+ ...|+++..++ ++|+|+|.|||||||. +|... .+
T Consensus 1 ~~l~~lv~i~s~s~~e~~~~~~l~~~l~~~g~~~~~~-~~~~~~~~~~~-~~~~i~~~~H~D~vp~------~~~~~~~~ 72 (336)
T TIGR01902 1 ELLKDLLEIYSPSGKEANAAKFLEEISKDLGLKLIID-DAGNFILGKGD-GHKKILLAGHVDTVPG------YIPVKIEG 72 (336)
T ss_pred ChHHHHhcCCCCCcchHHHHHHHHHHHHHcCCEEEEC-CCCcEEEEeCC-CCceEEEEccccccCC------CcccEEeC
Confidence 3689999999999999999999999999999998543 34688887643 3699999999999984 23333 36
Q ss_pred CceecCCc---hHHHHHHHHHHHHHHhccCCCCceEEEEEEcCCCCc-chHHHHHHhCCCCCcceEEEEccCCCCCcceE
Q 023049 133 GKMHACGH---DAHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEEGG-GGAKKMLDAGALENVEAIFGLHVSSLFPVGTV 208 (288)
Q Consensus 133 G~~~g~G~---dg~~a~~l~a~~~L~~~~~~~~g~v~~i~~~dEE~g-~Ga~~l~~~g~~~~~d~~i~~e~~~~~~~g~v 208 (288)
|++||+|. ++++|+++.|++.|++. .++|.|+|++|||.+ .|++++++... .+++++.||+.. +.+
T Consensus 73 g~i~GrG~~D~Kg~~aa~l~a~~~l~~~----~~~i~~~~~~dEE~g~~G~~~~~~~~~---~~~~ii~ept~~---~~i 142 (336)
T TIGR01902 73 GLLYGRGAVDAKGPLIAMIFATWLLNEK----GIKVIVSGLVDEESSSKGAREVIDKNY---PFYVIVGEPSGA---EGI 142 (336)
T ss_pred CEEEEecccCCCcHHHHHHHHHHHHHhC----CCcEEEEEEeCcccCCccHHHHHhhcC---CCEEEEecCCCC---cce
Confidence 89999985 38899999999999864 358999999999997 59999998743 358899998641 223
Q ss_pred EeeccccccceeEEEEEEEeccccCCCCCCCCcHHHHHHHHHHHHHH-HhhcccCCCCCceEEEEEEecCCCCCccccc
Q 023049 209 ASRPGPTLAAGGFFEAVINGKGGHAAIPQHTIDPIVAASNVIVSLQH-LVSREADPLDSQVVVSLMSDLLYEPHKTDRK 286 (288)
Q Consensus 209 ~~~~g~~~~G~~~~~i~v~G~~aHas~P~~g~NAI~~~~~~i~~l~~-~~~~~~~~~~~~t~~v~~I~gG~~~n~~~~~ 286 (288)
.. + ++|..+++++++|+++|+|.|. ||+..+..++..|.+ +..+ . .....+++++.|+||.++|++|+.
T Consensus 143 ~~--~--~kG~~~~~v~~~G~~~Hss~~~---~ai~~~~~~~~~l~~~~~~~-~-~~~~~~~~~~~i~gg~~~nvIP~~ 212 (336)
T TIGR01902 143 TL--G--YKGSLQLKIMCEGTPFHSSSAG---NAAELLIDYSKKIIEVYKQP-E-NYDKPSIVPTIIRFGESYNDTPAK 212 (336)
T ss_pred ee--e--eeeEEEEEEEEEecCcccCCCh---hHHHHHHHHHHHHHHHhccc-c-CCCCCcceeEEEEccCCCcCCCce
Confidence 22 2 3589999999999999999885 499999999999874 3221 1 122457999999999999999975
No 51
>TIGR01893 aa-his-dipept aminoacyl-histidine dipeptidase.
Probab=99.97 E-value=8.2e-29 Score=240.52 Aligned_cols=220 Identities=17% Similarity=0.117 Sum_probs=168.6
Q ss_pred HHHHHHHHHhHhCCCCCCChHHHHHHHHHHHHhCCCCeEeecCCceEEEEECCC----CCcEEEEEeecccccCC-----
Q 023049 50 YWMVNIRRKIHENPELGFQEFETSKLIRAELDQMGIPYKFPVAVTGVVGYIGTG----QPPFVALRADMDALAME----- 120 (288)
Q Consensus 50 ~~li~~~~~L~~iPs~s~~E~~~~~~i~~~l~~~G~~~~~~~~~~nvia~~~~~----~~~~i~l~aH~DtVP~~----- 120 (288)
+++++++++|++||+++++|.++++||.++|+++|++++++. ..|+++++++. ..|.|+|.|||||||.+
T Consensus 4 ~~~~~~l~~l~~i~s~s~~e~~~~~~l~~~l~~~G~~~~~~~-~~n~~~~~~~~~g~~~~~~l~l~~HlDtV~~~~~~~~ 82 (477)
T TIGR01893 4 SRVFKYFEEISKIPRPSKNEKEVSNFIVNWAKKLGLEVKQDE-VGNVLIRKPATPGYENHPPIVLQGHMDMVCEKNEDSL 82 (477)
T ss_pred HHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHcCCeEEEeC-CCeEEEEEcCCCCCCCCCeEEEEeeccccCCCCCCCC
Confidence 578999999999999999999999999999999999987753 47999998642 24899999999999975
Q ss_pred -CCCCCCccccC-CCceecCCc----h--HHHHHHHHHHHHHHhccCCCCceEEEEEEcCCCCc-chHHHHHHhCCCCCc
Q 023049 121 -ESVEWEHKSKV-PGKMHACGH----D--AHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEEGG-GGAKKMLDAGALENV 191 (288)
Q Consensus 121 -~~~~~pf~~~~-~G~~~g~G~----d--g~~a~~l~a~~~L~~~~~~~~g~v~~i~~~dEE~g-~Ga~~l~~~g~~~~~ 191 (288)
+|+..||++.. +|++||+|. | +++++++.+++. .+ .++++|.++|++|||.| .|++++.+... ..
T Consensus 83 ~~w~~~p~~~~~~~~~i~GrG~~lg~D~k~gva~~l~~~~~---~~-~~~~~i~~~~~~dEE~g~~Gs~~l~~~~~--~~ 156 (477)
T TIGR01893 83 HDFEKDPIELIIDGDWLKARGTTLGADNGIGVAMGLAILED---NN-LKHPPLELLFTVDEETGMDGALGLDENWL--SG 156 (477)
T ss_pred CCCCCCCeEEEEeCCEEEECCccccccccHHHHHHHHHHhc---CC-CCCCCEEEEEEeccccCchhhhhcChhhc--CC
Confidence 35667898875 689999996 6 566666665543 32 35679999999999987 59999876532 23
Q ss_pred ceEEEEccCCC------CCcce-E--E--eeccccccceeEEEEEEEe-ccccCC-CCCCCC-cHHHHHHHHHHHHHHHh
Q 023049 192 EAIFGLHVSSL------FPVGT-V--A--SRPGPTLAAGGFFEAVING-KGGHAA-IPQHTI-DPIVAASNVIVSLQHLV 257 (288)
Q Consensus 192 d~~i~~e~~~~------~~~g~-v--~--~~~g~~~~G~~~~~i~v~G-~~aHas-~P~~g~-NAI~~~~~~i~~l~~~~ 257 (288)
++++..++... .+.+. + . .......+|..+++|+++| +++|++ .|+.++ |||..++++|.++++..
T Consensus 157 ~~~~~~d~~~~~~~~~g~~~~~~~~~~~e~~~e~~~kG~~~~~i~~~G~~~~Hsg~~p~~~r~nAi~~aa~~i~~l~~~~ 236 (477)
T TIGR01893 157 KILINIDSEEEGEFIVGCAGGRNVDITFPVKYEKFTKNEEGYQISLKGLKGGHSGADIHKGRANANKLMARVLNELKENL 236 (477)
T ss_pred cEEEEecCCCCCeEEEECCCCeeEEEEEEEEEEecCCCceEEEEEEeCcCCCcCccccCCCCcCHHHHHHHHHHhhhhcC
Confidence 55666554210 00010 0 0 0001113578999999999 999998 698885 99999999999988652
Q ss_pred hcccCCCCCceEEEEEEecCCCCCccccc
Q 023049 258 SREADPLDSQVVVSLMSDLLYEPHKTDRK 286 (288)
Q Consensus 258 ~~~~~~~~~~t~~v~~I~gG~~~n~~~~~ 286 (288)
.++++.|.||.++|++|+.
T Consensus 237 ----------~~~v~~~~gg~~~N~ip~~ 255 (477)
T TIGR01893 237 ----------NFRLSDIKGGSKRNAIPRE 255 (477)
T ss_pred ----------CeEEEEEeCCCcccccCCc
Confidence 2689999999999999975
No 52
>PRK12893 allantoate amidohydrolase; Reviewed
Probab=99.96 E-value=1.4e-28 Score=234.52 Aligned_cols=214 Identities=17% Similarity=0.175 Sum_probs=162.7
Q ss_pred HHHHHHHHHhHhCCCC----------CCChHHHHHHHHHHHHhCCCCeEeecCCceEEEEECCC--CCcEEEEEeecccc
Q 023049 50 YWMVNIRRKIHENPEL----------GFQEFETSKLIRAELDQMGIPYKFPVAVTGVVGYIGTG--QPPFVALRADMDAL 117 (288)
Q Consensus 50 ~~li~~~~~L~~iPs~----------s~~E~~~~~~i~~~l~~~G~~~~~~~~~~nvia~~~~~--~~~~i~l~aH~DtV 117 (288)
+++++++++|++||+. +++|.++++||.++|+++||+++.+ ...|+++++++. ++|.|+|+||+|||
T Consensus 10 ~~~~~~l~~l~~i~s~~~~~~~~~~~s~~e~~~~~~l~~~l~~~G~~~~~~-~~~n~~a~~~g~~~~~~~l~l~~H~DtV 88 (412)
T PRK12893 10 ERLWDSLMALARIGATPGGGVTRLALTDEDREARDLLAQWMEEAGLTVSVD-AIGNLFGRRAGTDPDAPPVLIGSHLDTQ 88 (412)
T ss_pred HHHHHHHHHHhcccCCCCCcEEeccCCHHHHHHHHHHHHHHHHcCCEEEEc-CCCcEEEEeCCCCCCCCEEEEEecccCC
Confidence 6799999999999954 4558999999999999999998764 356999999653 25899999999999
Q ss_pred cCCCCCCCCccccCCCceecCCchHHHHHHHHHHHHHHhccCCCCceEEEEEEcCCCCc------chHHHHHHhCCC---
Q 023049 118 AMEESVEWEHKSKVPGKMHACGHDAHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEEGG------GGAKKMLDAGAL--- 188 (288)
Q Consensus 118 P~~~~~~~pf~~~~~G~~~g~G~dg~~a~~l~a~~~L~~~~~~~~g~v~~i~~~dEE~g------~Ga~~l~~~g~~--- 188 (288)
|.+. ..++ +++++++|+|++.|++.+..++++|.|+|++|||.+ .|++++.+....
T Consensus 89 p~~g------------~~dg---k~gvaa~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g~~~~~~~G~~~~~~~~~~~~~ 153 (412)
T PRK12893 89 PTGG------------RFDG---ALGVLAALEVVRTLNDAGIRTRRPIEVVSWTNEEGARFAPAMLGSGVFTGALPLDDA 153 (412)
T ss_pred CCCC------------cccc---hhhHHHHHHHHHHHHHcCCCCCCCeEEEEEccccccccccccccHHHHhCcCChHHH
Confidence 9632 2223 257889999999999988788999999999999985 277777643110
Q ss_pred ----------------------------CCcceEEEEccCCC------CCcceEEeeccccccceeEEEEEEEeccccCC
Q 023049 189 ----------------------------ENVEAIFGLHVSSL------FPVGTVASRPGPTLAAGGFFEAVINGKGGHAA 234 (288)
Q Consensus 189 ----------------------------~~~d~~i~~e~~~~------~~~g~v~~~~g~~~~G~~~~~i~v~G~~aHas 234 (288)
.+.+..+.+|.... .....+. ..++|..+++|+++|+++|+|
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~----~~~kG~~~~~i~v~G~~aHas 229 (412)
T PRK12893 154 LARRDADGITLGEALARIGYRGTARVGRRAVDAYLELHIEQGPVLEAEGLPIGVV----TGIQGIRWLEVTVEGQAAHAG 229 (412)
T ss_pred HhccCCCCCCHHHHHHHcCCCcccccccCCccEEEEEEeccCHHHHHCCCcEEEE----eeecccEEEEEEEEEECCCcC
Confidence 01233344443210 0012222 124689999999999999998
Q ss_pred -CCC-CCCcHHHHHHHHHHHHHHHhhcccCCCCCceEEEEEEecC-CCCCccccc
Q 023049 235 -IPQ-HTIDPIVAASNVIVSLQHLVSREADPLDSQVVVSLMSDLL-YEPHKTDRK 286 (288)
Q Consensus 235 -~P~-~g~NAI~~~~~~i~~l~~~~~~~~~~~~~~t~~v~~I~gG-~~~n~~~~~ 286 (288)
.|+ .|+|||.++++++.+|+++..+. . ...++|+|.|+|| .++|++|+.
T Consensus 230 ~~p~~~G~NAI~~a~~~i~~l~~~~~~~-~--~~~~~~vg~i~ggg~~~NvVP~~ 281 (412)
T PRK12893 230 TTPMAMRRDALVAAARIILAVERIAAAL-A--PDGVATVGRLRVEPNSRNVIPGK 281 (412)
T ss_pred CCcchhccCHHHHHHHHHHHHHHHHHhc-C--CCceEEEEEEEeeCCCceEECCe
Confidence 485 79999999999999999875432 2 2578999999985 899999985
No 53
>PRK09290 allantoate amidohydrolase; Reviewed
Probab=99.96 E-value=2.1e-28 Score=233.54 Aligned_cols=212 Identities=15% Similarity=0.197 Sum_probs=164.7
Q ss_pred HHHHHHHHHhHhC-C---------CCCCChHHHHHHHHHHHHhCCCCeEeecCCceEEEEECCC--CCcEEEEEeecccc
Q 023049 50 YWMVNIRRKIHEN-P---------ELGFQEFETSKLIRAELDQMGIPYKFPVAVTGVVGYIGTG--QPPFVALRADMDAL 117 (288)
Q Consensus 50 ~~li~~~~~L~~i-P---------s~s~~E~~~~~~i~~~l~~~G~~~~~~~~~~nvia~~~~~--~~~~i~l~aH~DtV 117 (288)
+.+++++++|++| + |++++|.++++||.++|+++||++++. .+.||++++++. ++|.|+|+||||||
T Consensus 7 ~~~~~~~~~l~~~~~~~~~g~~~~s~s~~e~~~a~~l~~~l~~~g~~~~~~-~~~nl~a~~~g~~~~~~~l~l~gH~DtV 85 (413)
T PRK09290 7 ERLWARLDELAKIGATPDGGVTRLALSPEDLQARDLFAEWMEAAGLTVRVD-AVGNLFGRLEGRDPDAPAVLTGSHLDTV 85 (413)
T ss_pred HHHHHHHHHHhcccCCCCCceeeccCCHHHHHHHHHHHHHHHHcCCEEEEc-CCCcEEEEecCCCCCCCEEEEecCccCC
Confidence 6788889999988 3 778899999999999999999998874 457999999763 35899999999999
Q ss_pred cCCCCCCCCccccCCCceecCCchHHHHHHHHHHHHHHhccCCCCceEEEEEEcCCCCc------chHHHHHHh------
Q 023049 118 AMEESVEWEHKSKVPGKMHACGHDAHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEEGG------GGAKKMLDA------ 185 (288)
Q Consensus 118 P~~~~~~~pf~~~~~G~~~g~G~dg~~a~~l~a~~~L~~~~~~~~g~v~~i~~~dEE~g------~Ga~~l~~~------ 185 (288)
|++. .. +.++++|++++|++.|++.+..++++|.|+|++|||.+ .|++.+++.
T Consensus 86 p~~g------------~~---d~k~g~aa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~g~~g~~~~G~~~~~~~~~~~~~ 150 (413)
T PRK09290 86 PNGG------------RF---DGPLGVLAGLEAVRTLNERGIRPRRPIEVVAFTNEEGSRFGPAMLGSRVFTGALTPEDA 150 (413)
T ss_pred CCCC------------Cc---CCHHHHHHHHHHHHHHHHcCCCCCCCeEEEEEcCCccccccCccccHHHHHcccCHHHH
Confidence 9732 11 11357899999999999888778899999999999984 377776532
Q ss_pred ------------------CCCCCcceEEEE--ccCCC--------------CCc---ceEEeeccccccceeEEEEEEEe
Q 023049 186 ------------------GALENVEAIFGL--HVSSL--------------FPV---GTVASRPGPTLAAGGFFEAVING 228 (288)
Q Consensus 186 ------------------g~~~~~d~~i~~--e~~~~--------------~~~---g~v~~~~g~~~~G~~~~~i~v~G 228 (288)
| + +.|++++. ||+.. .|+ +.+.. .++|..+++|+++|
T Consensus 151 ~~~~~~~~~~~~~~~~~~~-~-~~d~~i~~~~ept~~~~~~~~~~~~~~~~e~~~~~~~i~~----~~kG~~~~~i~v~G 224 (413)
T PRK09290 151 LALRDADGVSFAEALAAIG-Y-DGDEAVGAARARRDIKAFVELHIEQGPVLEAEGLPIGVVT----GIVGQRRYRVTFTG 224 (413)
T ss_pred HhccCCCCCCHHHHHHHcC-C-ChhhccccccCCCCccEEEEEEeccCHHHHHCCCcEEEEe----eeeccEEEEEEEEE
Confidence 2 2 34666654 45421 111 12222 24689999999999
Q ss_pred ccccCC-CC-CCCCcHHHHHHHHHHHHHHHhhcccCCCCCceEEEEEEecC-CCCCccccc
Q 023049 229 KGGHAA-IP-QHTIDPIVAASNVIVSLQHLVSREADPLDSQVVVSLMSDLL-YEPHKTDRK 286 (288)
Q Consensus 229 ~~aHas-~P-~~g~NAI~~~~~~i~~l~~~~~~~~~~~~~~t~~v~~I~gG-~~~n~~~~~ 286 (288)
+++|++ .| +.|+|||..+++++.+|+++..+.. .+.+++++.|++| ..+|++|+.
T Consensus 225 k~aHas~~P~~~g~NAI~~~~~~i~~l~~l~~~~~---~~~~~~~g~i~~g~~~~NvIP~~ 282 (413)
T PRK09290 225 EANHAGTTPMALRRDALLAAAEIILAVERIAAAHG---PDLVATVGRLEVKPNSVNVIPGE 282 (413)
T ss_pred ECCCCCCCCchhccCHHHHHHHHHHHHHHHHHhcC---CCeEEEEEEEEEcCCCCeEECCE
Confidence 999998 69 5799999999999999988753321 2478999999975 899999975
No 54
>TIGR01882 peptidase-T peptidase T. This model represents a tripeptide aminopeptidase known as Peptidase T, which has a substrate preference for hydrophobic peptides.
Probab=99.96 E-value=1.1e-28 Score=235.35 Aligned_cols=197 Identities=17% Similarity=0.175 Sum_probs=152.9
Q ss_pred HHHHHHHHHhHhCCCCCC----------ChHHHHHHHHHHHHhCCCC-eEeecCCceEEEEECCCCC---cEEEEEeecc
Q 023049 50 YWMVNIRRKIHENPELGF----------QEFETSKLIRAELDQMGIP-YKFPVAVTGVVGYIGTGQP---PFVALRADMD 115 (288)
Q Consensus 50 ~~li~~~~~L~~iPs~s~----------~E~~~~~~i~~~l~~~G~~-~~~~~~~~nvia~~~~~~~---~~i~l~aH~D 115 (288)
+++++.+-++++|+|.|+ .|.+.+++|+++|+++|++ ++.+....||+|++++..+ |.|+|.+|||
T Consensus 3 ~~~~~~f~~~~~i~s~s~~~~~~~ps~~~~~~~a~~l~~~l~~lG~~~v~~d~~~gnv~~~~~~~~~~~~~~i~~~aHmD 82 (410)
T TIGR01882 3 EELLPRFLTYVKVNTRSDENSDTCPSTPGQLTFGNMLVDDLKSLGLQDAHYDEKNGYVIATIPSNTDKDVPTIGFLAHVD 82 (410)
T ss_pred hHHHHHHHhhEEEecccCCCCCCCCCCHhHHHHHHHHHHHHHHcCCceEEEcCCceEEEEEecCCCCCCCCEEEEEEecc
Confidence 467888888899988887 5558999999999999998 6665325799999976433 9999999999
Q ss_pred cccC-CCC---------------------------CCCCccc------c-CC-CceecCCchHHHHHHHHHHHHHHhccC
Q 023049 116 ALAM-EES---------------------------VEWEHKS------K-VP-GKMHACGHDAHVAMLLGAAKMLQVFRH 159 (288)
Q Consensus 116 tVP~-~~~---------------------------~~~pf~~------~-~~-G~~~g~G~dg~~a~~l~a~~~L~~~~~ 159 (288)
|||. +.. ..+||+. . .+ +.++|+++++++|++|.|+++|++.+.
T Consensus 83 Tv~~~~~~v~p~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~g~~l~G~D~KgglAa~l~A~~~L~e~~~ 162 (410)
T TIGR01882 83 TADFNGENVNPQIIENYDGESIIQLGDLEFTLDPDQFPNLSGYKGQTLITTDGTTLLGADDKAGIAEIMTAADYLINHPE 162 (410)
T ss_pred cCcCCCCCCCCEEEecCCCceeeecCCCCeEEChHhChhHHhccCceEEEcCCCEeecccCHHHHHHHHHHHHHHHhCCC
Confidence 9984 221 1345553 1 23 478999999999999999999998644
Q ss_pred CCCceEEEEEEcCCCCcchHHHHHHhCCCCCcceEEEEccCCCCCcceEEeeccccccceeEEEEEEEeccccCCCC-CC
Q 023049 160 EIKGTIVLVFQPAEEGGGGAKKMLDAGALENVEAIFGLHVSSLFPVGTVASRPGPTLAAGGFFEAVINGKGGHAAIP-QH 238 (288)
Q Consensus 160 ~~~g~v~~i~~~dEE~g~Ga~~l~~~g~~~~~d~~i~~e~~~~~~~g~v~~~~g~~~~G~~~~~i~v~G~~aHas~P-~~ 238 (288)
.++++|.|+|++|||.+.|++.+...+. +.+..+++++. |+|.+... ..|..+++|+++|+++|++.+ +.
T Consensus 163 ~~~g~I~~~ft~dEE~g~Ga~~l~~~~~--~~~~~~~i~ge---p~g~i~~~----~~g~~~~~I~v~Gk~aHa~~~~~~ 233 (410)
T TIGR01882 163 IKHGTIRVAFTPDEEIGRGAHKFDVKDF--NADFAYTVDGG---PLGELEYE----TFSAAAAKITIQGNNVHPGTAKGK 233 (410)
T ss_pred CCCCCEEEEEECcccCCcCcchhhhhhc--CccEEEEeCCC---CCCeEEEc----cccceEEEEEEEEEecCcccChHH
Confidence 4689999999999999888888876543 35666665543 45655432 136799999999999999965 67
Q ss_pred CCcHHHHHHHHHHHHHH
Q 023049 239 TIDPIVAASNVIVSLQH 255 (288)
Q Consensus 239 g~NAI~~~~~~i~~l~~ 255 (288)
++|||..+.+++..+..
T Consensus 234 g~nAi~~a~~~~~~l~~ 250 (410)
T TIGR01882 234 MINAAQIAIDLHNLLPE 250 (410)
T ss_pred HHHHHHHHHHHHHhcCC
Confidence 99999999988776654
No 55
>PRK12891 allantoate amidohydrolase; Reviewed
Probab=99.96 E-value=5.6e-27 Score=223.87 Aligned_cols=215 Identities=18% Similarity=0.150 Sum_probs=159.2
Q ss_pred HHHHHHHHhHhC----------CCCCCChHHHHHHHHHHHHhCCCCeEeecCCceEEEEECCC-C-CcEEEEEeeccccc
Q 023049 51 WMVNIRRKIHEN----------PELGFQEFETSKLIRAELDQMGIPYKFPVAVTGVVGYIGTG-Q-PPFVALRADMDALA 118 (288)
Q Consensus 51 ~li~~~~~L~~i----------Ps~s~~E~~~~~~i~~~l~~~G~~~~~~~~~~nvia~~~~~-~-~~~i~l~aH~DtVP 118 (288)
++++.+..|-++ ++.+++|.++++||.++|+++|++++++ ...|+++++++. + +|.|+|+|||||||
T Consensus 11 ~~~~~~~~~~~~~~~~~~g~~r~~~~~~e~~~~~~l~~~l~~~G~~v~~~-~~gNl~a~~~g~~~~~~~l~~~~H~DtVp 89 (414)
T PRK12891 11 RLWASLERMAQIGATPKGGVCRLALTDGDREARDLFVAWARDAGCTVRVD-AMGNLFARRAGRDPDAAPVMTGSHADSQP 89 (414)
T ss_pred HHHHHHHHHHhccCCCCCceeeccCCHHHHHHHHHHHHHHHHCCCEEEEC-CCCCEEEEecCCCCCCCeEEEEecccCCC
Confidence 355555555554 2456789999999999999999998875 456999999764 2 58999999999999
Q ss_pred CCCCCCCCccccCCCceecCCchHHHHHHHHHHHHHHhccCCCCceEEEEEEcCCCCc------chHH------------
Q 023049 119 MEESVEWEHKSKVPGKMHACGHDAHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEEGG------GGAK------------ 180 (288)
Q Consensus 119 ~~~~~~~pf~~~~~G~~~g~G~dg~~a~~l~a~~~L~~~~~~~~g~v~~i~~~dEE~g------~Ga~------------ 180 (288)
.+. . .+++++++++|.|++.|++.+..++++|.|++++|||.+ .|++
T Consensus 90 ~gg------------~---~D~k~Gv~a~l~a~~~l~~~~~~~~~~i~v~~~~dEE~~~f~~~~~Gs~~~~g~~~~~~~~ 154 (414)
T PRK12891 90 TGG------------R---YDGIYGVLGGLEVVRALNDAGIETERPVDVVIWTNEEGSRFAPSMVGSGVFFGVYPLEYLL 154 (414)
T ss_pred CCc------------c---ccchhhHHHHHHHHHHHHHcCCCCCCCeEEEEecccccCcCCcccccHHHHhCCCCHHHHH
Confidence 641 1 234568999999999999999889999999999999985 2665
Q ss_pred ------------HHHHhCCCC-------CcceEEEEccCCC---CCcc-eEEeeccccccceeEEEEEEEeccccCC-CC
Q 023049 181 ------------KMLDAGALE-------NVEAIFGLHVSSL---FPVG-TVASRPGPTLAAGGFFEAVINGKGGHAA-IP 236 (288)
Q Consensus 181 ------------~l~~~g~~~-------~~d~~i~~e~~~~---~~~g-~v~~~~g~~~~G~~~~~i~v~G~~aHas-~P 236 (288)
+|.+.|+.. +.++.+.+|.+.. .+.+ .+.+. ..++|..||+|+++|+++|++ .|
T Consensus 155 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~e~h~e~g~vle~~~~~~~iv--~~~kG~~~~~v~v~Gk~aHa~~~P 232 (414)
T PRK12891 155 SRRDDTGRTLGEHLARIGYAGAEPVGGYPVHAAYELHIEQGAILERAGKTIGVV--TAGQGQRWYEVTLTGVDAHAGTTP 232 (414)
T ss_pred hccCCCCCCHHHHHHHCCCCcccccccCCCCEEEEEEeCCCHHHHHCCCcEEEE--eeccCcEEEEEEEEeECCCCCCCC
Confidence 334545321 1234455454321 0112 11111 124589999999999999998 68
Q ss_pred C-CCCcHHHHHHHHHHHHHHHhhcccCCCCCceEEEEEEecC-CCCCccccc
Q 023049 237 Q-HTIDPIVAASNVIVSLQHLVSREADPLDSQVVVSLMSDLL-YEPHKTDRK 286 (288)
Q Consensus 237 ~-~g~NAI~~~~~~i~~l~~~~~~~~~~~~~~t~~v~~I~gG-~~~n~~~~~ 286 (288)
+ .|+|||..++++|.+|+++..+. ..+.++|||+|+|| .++|++|+.
T Consensus 233 ~~~g~nAI~~aa~~i~~l~~~~~~~---~~~~t~~vg~I~gG~~~~NvVP~~ 281 (414)
T PRK12891 233 MAFRRDALVGAARMIAFLDALGRRD---APDARATVGMIDARPNSRNTVPGE 281 (414)
T ss_pred cccccCHHHHHHHHHHHHHHHHHhc---CCCeEEEEEEEEeeCCCcceECCe
Confidence 6 58999999999999999875432 13579999999997 699999985
No 56
>PRK12890 allantoate amidohydrolase; Reviewed
Probab=99.95 E-value=1.3e-26 Score=221.17 Aligned_cols=211 Identities=15% Similarity=0.123 Sum_probs=157.0
Q ss_pred HHHHHHHHhHhC---------CCCCCChHHHHHHHHHHHHhCCCCeEeecCCceEEEEECCC--CCcEEEEEeecccccC
Q 023049 51 WMVNIRRKIHEN---------PELGFQEFETSKLIRAELDQMGIPYKFPVAVTGVVGYIGTG--QPPFVALRADMDALAM 119 (288)
Q Consensus 51 ~li~~~~~L~~i---------Ps~s~~E~~~~~~i~~~l~~~G~~~~~~~~~~nvia~~~~~--~~~~i~l~aH~DtVP~ 119 (288)
++++.+.+|.+| ||.+++|.++++||.++|+++||++++. .+.|+++++++. ++|.|+|+||+||||.
T Consensus 10 ~~~~~~~~~~~i~~~~~~~~~~s~~~~e~~~~~~l~~~l~~~G~~~~~~-~~~nlia~~~g~~~~~~~l~~~~H~DtVp~ 88 (414)
T PRK12890 10 RLLARLEELAAIGRDGPGWTRLALSDEERAARALLAAWMRAAGLEVRRD-AAGNLFGRLPGRDPDLPPLMTGSHLDTVPN 88 (414)
T ss_pred HHHHHHHHHhccCCCCCceeeccCCHHHHHHHHHHHHHHHHCCCEEEEc-CCCcEEEEeCCCCCCCCEEEEeCcccCCCC
Confidence 455556666655 4778999999999999999999999874 457999999764 3689999999999996
Q ss_pred CCCCCCCccccCCCceecCCchHHHHHHHHHHHHHHhccCCCCceEEEEEEcCCCCc------chHHHHHH---------
Q 023049 120 EESVEWEHKSKVPGKMHACGHDAHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEEGG------GGAKKMLD--------- 184 (288)
Q Consensus 120 ~~~~~~pf~~~~~G~~~g~G~dg~~a~~l~a~~~L~~~~~~~~g~v~~i~~~dEE~g------~Ga~~l~~--------- 184 (288)
+ |. .+++++++++|.|++.|++.+..++++|.|++++|||.+ .|++.+.+
T Consensus 89 ~------------g~---~D~~~g~aa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~~~~~~~~G~~~~~~~~~~~~~~~ 153 (414)
T PRK12890 89 G------------GR---YDGILGVLAGLEVVAALREAGIRPPHPLEVIAFTNEEGVRFGPSMIGSRALAGTLDVEAVLA 153 (414)
T ss_pred C------------CC---cCCHHHHHHHHHHHHHHHHcCCCCCCCeEEEEEecccccccCCccccHHHHHcccChHHHHh
Confidence 3 21 122457899999999999888788999999999999974 26655433
Q ss_pred ---------------hCCCCCcceEEE--EccCC-----------------CCCcceEEeeccccccceeEEEEEEEecc
Q 023049 185 ---------------AGALENVEAIFG--LHVSS-----------------LFPVGTVASRPGPTLAAGGFFEAVINGKG 230 (288)
Q Consensus 185 ---------------~g~~~~~d~~i~--~e~~~-----------------~~~~g~v~~~~g~~~~G~~~~~i~v~G~~ 230 (288)
.|. ..|.+++ .||+. ....+.+.. .++|..|++|+++|++
T Consensus 154 ~~~~~~~~~~~~~~~~g~--~~~~~~~~~~ep~~~~~~~~~h~~~g~~~~~~~~~~~i~~----~~kG~~~~~i~v~Gk~ 227 (414)
T PRK12890 154 TRDDDGTTLAEALRRIGG--DPDALPGALRPPGAVAAFLELHIEQGPVLEAEGLPIGVVT----AIQGIRRQAVTVEGEA 227 (414)
T ss_pred ccCCCCCCHHHHHHHcCC--ChhhccccccCCCCccEEEEEeeCcCHHHHhCCCceEEEE----eecCcEEEEEEEEEEC
Confidence 222 1233222 34421 001122222 2458899999999999
Q ss_pred ccCC-CCCC-CCcHHHHHHHHHHHHHHHhhcccCCCCCceEEEEEEecC-CCCCccccc
Q 023049 231 GHAA-IPQH-TIDPIVAASNVIVSLQHLVSREADPLDSQVVVSLMSDLL-YEPHKTDRK 286 (288)
Q Consensus 231 aHas-~P~~-g~NAI~~~~~~i~~l~~~~~~~~~~~~~~t~~v~~I~gG-~~~n~~~~~ 286 (288)
+|+| .|+. +.|||..++++|.+|+++..+.. .+.++|+|.|++| ..+|++|+.
T Consensus 228 aHas~~P~~~g~nAI~~~~~~i~~l~~~~~~~~---~~~~~~~g~i~~gg~~~NvIP~~ 283 (414)
T PRK12890 228 NHAGTTPMDLRRDALVAAAELVTAMERRARALL---HDLVATVGRLDVEPNAINVVPGR 283 (414)
T ss_pred CCCCcCChhhccCHHHHHHHHHHHHHHHHHhcC---CCeEEEEEEEEECCCCceEECCe
Confidence 9998 5864 58999999999999998754322 4678999999974 899999985
No 57
>KOG2275 consensus Aminoacylase ACY1 and related metalloexopeptidases [Amino acid transport and metabolism]
Probab=99.95 E-value=1.2e-25 Score=207.50 Aligned_cols=233 Identities=15% Similarity=0.088 Sum_probs=174.4
Q ss_pred HHHHHHHHHhHhCCCCCCC--hH-HHHHHHHHHHHhCCCCeEee---cCCceEEEEECCC--CCcEEEEEeecccccCCC
Q 023049 50 YWMVNIRRKIHENPELGFQ--EF-ETSKLIRAELDQMGIPYKFP---VAVTGVVGYIGTG--QPPFVALRADMDALAMEE 121 (288)
Q Consensus 50 ~~li~~~~~L~~iPs~s~~--E~-~~~~~i~~~l~~~G~~~~~~---~~~~nvia~~~~~--~~~~i~l~aH~DtVP~~~ 121 (288)
..++..+|++.|||+.-.+ =. ++++|+..+.+++|+.++.. +..++++.+|.|. +-|+|+|++|+||||+-.
T Consensus 25 ~~~v~~f~eylRi~Tv~p~~dy~~a~~~Fl~~~a~~l~l~~~~i~~~p~~~~~l~T~~GS~P~L~silL~SH~DVVP~f~ 104 (420)
T KOG2275|consen 25 NISVTRFREYLRIPTVQPNPDYTIACADFLKKYAKSLGLTVQKIESEPGKYVLLYTWLGSDPELPSILLNSHTDVVPVFR 104 (420)
T ss_pred chHHHHHHHHhhccccccCCCccHHHHHHHHHHHHhcCCceeEEEecCceeEEEEEeeCCCCCccceeeeccccccCCCc
Confidence 5578888899999886332 23 78999999999999987542 3467888888764 349999999999999743
Q ss_pred --CCCCCccccC--CCceecCCc-h--HHHHHHHHHHHHHHhccCCCCceEEEEEEcCCCCc--chHHHHHHhCCCCCcc
Q 023049 122 --SVEWEHKSKV--PGKMHACGH-D--AHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEEGG--GGAKKMLDAGALENVE 192 (288)
Q Consensus 122 --~~~~pf~~~~--~G~~~g~G~-d--g~~a~~l~a~~~L~~~~~~~~g~v~~i~~~dEE~g--~Ga~~l~~~g~~~~~d 192 (288)
|+.+||+... +|.+||||+ | +..++.|.|++.|+..+.+++++|.+.|.+|||.+ .|++.+.+...+++..
T Consensus 105 e~W~h~Pfsa~~~~~g~IyaRGaqD~K~~~va~leAir~L~~~g~kp~Rti~lsfvpDEEi~G~~Gm~~fa~~~~~~~l~ 184 (420)
T KOG2275|consen 105 EKWTHPPFSAFKDEDGNIYARGAQDMKCVGVAYLEAIRNLKASGFKPKRTIHLSFVPDEEIGGHIGMKEFAKTEEFKKLN 184 (420)
T ss_pred ccCccCCccccccCCCcEEeccccchHhHHHHHHHHHHHHHhcCCCcCceEEEEecCchhccCcchHHHHhhhhhhcccc
Confidence 6888999874 689999997 4 67788999999999999999999999999999998 4888888743344434
Q ss_pred eEE-EEccCCCCCcceEEeeccccccceeEEEEEEEeccccCCCCCCCCcHHHHHHHHHHHHHHHhhccc-----C----
Q 023049 193 AIF-GLHVSSLFPVGTVASRPGPTLAAGGFFEAVINGKGGHAAIPQHTIDPIVAASNVIVSLQHLVSREA-----D---- 262 (288)
Q Consensus 193 ~~i-~~e~~~~~~~g~v~~~~g~~~~G~~~~~i~v~G~~aHas~P~~g~NAI~~~~~~i~~l~~~~~~~~-----~---- 262 (288)
..+ .-|+.. .+... ...+...+|..|++++++|.++|+|.|.. ..|+.++.++|..+++....+. .
T Consensus 185 ~~filDEG~~-se~d~--~~vfyaEkg~w~~~v~~~G~~GHss~~~~-nTa~~~l~klv~~~~~fr~~q~~~l~~~p~~~ 260 (420)
T KOG2275|consen 185 LGFILDEGGA-TENDF--ATVFYAEKGPWWLKVTANGTPGHSSYPPP-NTAIEKLEKLVESLEEFREKQVDLLASGPKLA 260 (420)
T ss_pred eeEEecCCCC-Ccccc--eeEEEEeeceeEEEEEecCCCCCCCCCCC-ccHHHHHHHHHHHHHHhHHHHHHHhhcCCcee
Confidence 444 444422 11121 12234456899999999999999997422 3567777777777766542111 1
Q ss_pred CCCCceEEEEEEecCCCCCccccc
Q 023049 263 PLDSQVVVSLMSDLLYEPHKTDRK 286 (288)
Q Consensus 263 ~~~~~t~~v~~I~gG~~~n~~~~~ 286 (288)
..+.+|+||+.|+||++.|..|+.
T Consensus 261 ~~~vtT~Nv~~i~GGv~~N~~P~~ 284 (420)
T KOG2275|consen 261 LGDVTTINVGIINGGVQSNVLPET 284 (420)
T ss_pred ccceeEEeeeeeecccccCcCchh
Confidence 245689999999999999999764
No 58
>TIGR01879 hydantase amidase, hydantoinase/carbamoylase family. Enzymes in this subfamily hydrolize the amide bonds of compounds containing carbamoyl groups or hydantoin rings. These enzymes are members of the broader family of amidases represented by pfam01546.
Probab=99.94 E-value=3.8e-25 Score=210.36 Aligned_cols=202 Identities=20% Similarity=0.261 Sum_probs=149.3
Q ss_pred CCCCChHHHHHHHHHHHHhCCCCeEeecCCceEEEEECCC-C-CcEEEEEeecccccCCCCCCCCccccCCCceecCCch
Q 023049 64 ELGFQEFETSKLIRAELDQMGIPYKFPVAVTGVVGYIGTG-Q-PPFVALRADMDALAMEESVEWEHKSKVPGKMHACGHD 141 (288)
Q Consensus 64 s~s~~E~~~~~~i~~~l~~~G~~~~~~~~~~nvia~~~~~-~-~~~i~l~aH~DtVP~~~~~~~pf~~~~~G~~~g~G~d 141 (288)
+++++|.++++||.++|+++|++++.+ ...||++++++. + +|.|+|+|||||||.+ |+.+|+
T Consensus 25 ~~~~~e~~~~~~l~~~~~~~G~~~~~~-~~~nl~a~~~g~~~~~~~l~~~~H~DtV~~g------------g~~dg~--- 88 (401)
T TIGR01879 25 ALSPEDREAQDLFKKRMRAAGLEVRFD-EVGNLIGRKEGTEPPLEVVLSGSHIDTVVNG------------GNFDGQ--- 88 (401)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEEe-cCCcEEEEecCCCCCCCEEEEecccccCCCC------------CccCCH---
Confidence 457889999999999999999998865 357999999764 2 5899999999999963 222332
Q ss_pred HHHHHHHHHHHHHHhccCCCCceEEEEEEcCCCCc------chHHHHHHhC-------------C--------CC-----
Q 023049 142 AHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEEGG------GGAKKMLDAG-------------A--------LE----- 189 (288)
Q Consensus 142 g~~a~~l~a~~~L~~~~~~~~g~v~~i~~~dEE~g------~Ga~~l~~~g-------------~--------~~----- 189 (288)
.+++++|.+++.|++.+..++++|.|++++|||.+ .|++.++... . ..
T Consensus 89 ~gvaa~l~a~~~l~~~g~~~~~~i~~~~~~dEE~~~f~~~~~Gs~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~ 168 (401)
T TIGR01879 89 LGVLAGIEVVDALKEAYVVPLHPIEVVAFTEEEGSRFPYGMWGSRNMVGLANPEDVRNICDAKGISFAEAMKACGPDLPN 168 (401)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCCeEEEEEeCCcCcCcccccccHHHHhcccchhHHHhCcCCCCCCHHHHHHHcCCCccc
Confidence 35788899999999999889999999999999972 4787775421 0 00
Q ss_pred -------CcceEEEEccCC--C-CCcce-EEeeccccccceeEEEEEEEeccccCCC-CC-CCCcHHHHHHHHHHHHHHH
Q 023049 190 -------NVEAIFGLHVSS--L-FPVGT-VASRPGPTLAAGGFFEAVINGKGGHAAI-PQ-HTIDPIVAASNVIVSLQHL 256 (288)
Q Consensus 190 -------~~d~~i~~e~~~--~-~~~g~-v~~~~g~~~~G~~~~~i~v~G~~aHas~-P~-~g~NAI~~~~~~i~~l~~~ 256 (288)
++++.+.+|.+- - .+.|. +.+. ..++|..|++|+++|+++|++. |+ .|+|||.++++++.+|+++
T Consensus 169 ~~~~~~~~~~~~~e~Hieqg~~l~~~g~~~~v~--~~~~G~~~~~i~v~G~~aHa~~~p~~~g~nAi~~aa~~i~~l~~l 246 (401)
T TIGR01879 169 QPLRPRGDIKAYVELHIEQGPVLESNGQPIGVV--NAIAGQRWYKVTLNGESNHAGTTPMSLRRDPLVAASRIIHQVEEK 246 (401)
T ss_pred ccccccccccEEEEEEEcCCcChhhCCCeEEEE--EEecCcEEEEEEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHH
Confidence 112334444321 0 01111 1111 1235889999999999999985 64 5899999999999999987
Q ss_pred hhcccCCCCCceEEEEEEecC-CCCCccccc
Q 023049 257 VSREADPLDSQVVVSLMSDLL-YEPHKTDRK 286 (288)
Q Consensus 257 ~~~~~~~~~~~t~~v~~I~gG-~~~n~~~~~ 286 (288)
..+.. .+.+.++|.|++| ..+|++|+.
T Consensus 247 ~~~~~---~~~~~~vg~i~~g~~~~NvVP~~ 274 (401)
T TIGR01879 247 AKRMG---DPTVGTVGKVEARPNGVNVIPGK 274 (401)
T ss_pred HHhcC---CCeEEEEEEEEecCCceEEECCE
Confidence 54322 2457899999986 779999975
No 59
>TIGR03176 AllC allantoate amidohydrolase. This enzyme catalyzes the breakdown of allantoate, first to ureidoglycine by hydrolysis and then decarboxylation of one of the two equivalent ureido groups. Ureidoglycine then spontaneously exchanges ammonia for water resulting in ureidoglycolate. This enzyme is an alternative to allantoicase (3.5.3.4) which releases urea.
Probab=99.93 E-value=2.4e-24 Score=205.29 Aligned_cols=216 Identities=13% Similarity=0.151 Sum_probs=159.9
Q ss_pred HHHHHHHHHhHhC---C-------CCCCChHHHHHHHHHHHHhCCCCeEeecCCceEEEEECCC--CCcEEEEEeecccc
Q 023049 50 YWMVNIRRKIHEN---P-------ELGFQEFETSKLIRAELDQMGIPYKFPVAVTGVVGYIGTG--QPPFVALRADMDAL 117 (288)
Q Consensus 50 ~~li~~~~~L~~i---P-------s~s~~E~~~~~~i~~~l~~~G~~~~~~~~~~nvia~~~~~--~~~~i~l~aH~DtV 117 (288)
+++++.+.+|-++ | .+|.++.++++|+.+||+++|+++..+.. .|++++++|. +.|.|++.+|||||
T Consensus 3 ~~~~~~~~~~~~~~~~~~~g~~R~~~s~~~~~a~~~~~~~~~~~Gl~v~~D~~-gN~~~~~~g~~~~~~~i~~gsHlDtv 81 (406)
T TIGR03176 3 KHFRQAIEELSSFGADPAGGMTRLLYSPEWLAAQQQFKKRMAESGLETRFDDV-GNLYGRLVGTEFPEETILTGSHIDTV 81 (406)
T ss_pred HHHHHHHHHHhccCCCCCCceEeeeCCHHHHHHHHHHHHHHHHcCCEEEEcCC-CcEEEEecCCCCCCCeEEEeccccCC
Confidence 4566666666665 2 23556899999999999999999887644 6999999874 35899999999999
Q ss_pred cCCCCCCCCccccCCCceecCCchHHHHHHHHHHHHHHhccCCCCceEEEEEEcCCCCc------chHHHHHH-------
Q 023049 118 AMEESVEWEHKSKVPGKMHACGHDAHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEEGG------GGAKKMLD------- 184 (288)
Q Consensus 118 P~~~~~~~pf~~~~~G~~~g~G~dg~~a~~l~a~~~L~~~~~~~~g~v~~i~~~dEE~g------~Ga~~l~~------- 184 (288)
|.+ |+..|. .++++.|.+++.|++.+..++++|.++++.+||++ .|++.+..
T Consensus 82 ~~g------------G~~dg~---~Gv~~~le~~~~l~~~~~~~~~~i~vi~~~~EEg~rf~~~~~Gs~~~~g~~~~~~~ 146 (406)
T TIGR03176 82 VNG------------GNLDGQ---FGALAAWLAVDYLKEKYGAPLRTVEVLSMAEEEGSRFPYVFWGSKNIFGLAKPEDV 146 (406)
T ss_pred CCC------------CccCch---hhHHHHHHHHHHHHHcCCCCCCCeEEEEeccccCccCCcccccHHHHhCCCCHHHH
Confidence 963 211111 35778899999999998899999999999999985 26666541
Q ss_pred -----------------hCC--------CCCcceEEEEccC--CCCC-cce-EEeeccccccceeEEEEEEEeccccCCC
Q 023049 185 -----------------AGA--------LENVEAIFGLHVS--SLFP-VGT-VASRPGPTLAAGGFFEAVINGKGGHAAI 235 (288)
Q Consensus 185 -----------------~g~--------~~~~d~~i~~e~~--~~~~-~g~-v~~~~g~~~~G~~~~~i~v~G~~aHas~ 235 (288)
.|+ ..++++.+.+|.+ +-++ .|. +.+..+ .+|..+++|+++|+++|++.
T Consensus 147 ~~~~d~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~elHieqG~~Le~~g~~igiv~~--~~G~~~~~v~v~GkaaHag~ 224 (406)
T TIGR03176 147 RTIEDAKGIKFVDAMHACGFDLRKAPTVRDDIKAFVELHIEQGCVLESEGQSIGVVNA--IVGQRRYTVNLKGEANHAGT 224 (406)
T ss_pred HhCcCCCCCCHHHHHHHcCCCcccccccccccceEEEEEECCCcchHHCCCeEEEEee--cccceEEEEEEEEECCCCCC
Confidence 111 1145678888883 3221 121 112112 35889999999999999996
Q ss_pred CCC--CCcHHHHHHHHHHHHHHHhhcccCCCCCceEEEEEEe-cCCCCCccccc
Q 023049 236 PQH--TIDPIVAASNVIVSLQHLVSREADPLDSQVVVSLMSD-LLYEPHKTDRK 286 (288)
Q Consensus 236 P~~--g~NAI~~~~~~i~~l~~~~~~~~~~~~~~t~~v~~I~-gG~~~n~~~~~ 286 (288)
|.. +.|||.++++++.+++++..+ . ..+.++|||+|+ +|.++|++|+.
T Consensus 225 ~p~~~r~dAi~aaa~~i~~l~~~~~~-~--~~~~~~tvG~I~~gg~~~NvIP~~ 275 (406)
T TIGR03176 225 TPMSYRRDTVYAFSRICTQSIERAKE-I--GDPLVLTFGKVEPVPNTVNVVPGE 275 (406)
T ss_pred CCcccccCHHHHHHHHHHHHHHHHHh-c--CCCcEEEEEEEEEcCCceEEECCe
Confidence 543 489999999999999887432 1 235689999999 57999999975
No 60
>PRK08554 peptidase; Reviewed
Probab=99.93 E-value=2.9e-24 Score=206.56 Aligned_cols=200 Identities=22% Similarity=0.225 Sum_probs=147.9
Q ss_pred HHHHHHHHhHhCCCCCCC------hHHHHHHHHHHHHhCCCCeEee--cCCceEEEEECCCCCcEEEEEeecccccCC--
Q 023049 51 WMVNIRRKIHENPELGFQ------EFETSKLIRAELDQMGIPYKFP--VAVTGVVGYIGTGQPPFVALRADMDALAME-- 120 (288)
Q Consensus 51 ~li~~~~~L~~iPs~s~~------E~~~~~~i~~~l~~~G~~~~~~--~~~~nvia~~~~~~~~~i~l~aH~DtVP~~-- 120 (288)
++++++++|++|||.++. |.++++|+.++|+++||+++.. .+++|+++.++++ .+.|+|+|||||||++
T Consensus 2 ~~~~~l~~LV~i~S~~~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~~~l~~~~~~~-~~~l~l~gH~DtVp~~~~ 80 (438)
T PRK08554 2 DVLELLSSLVSFETVNDPSKGIKPSKECPKFIKDTLESWGIESELIEKDGYYAVYGEIGEG-KPKLLFMAHFDVVPVNPE 80 (438)
T ss_pred hHHHHHHHHhCCCCCCCcccCcchHHHHHHHHHHHHHHCCCeEEEEecCCceEEEEEeCCC-CCEEEEEeccccCCCCcc
Confidence 478999999999997643 5889999999999999998653 2357999998543 4789999999999986
Q ss_pred CCCCCCccccC-CCceecCCc---hHHHHHHHHHHHHHHhccCCCCceEEEEEEcCCCCcc-hHHHHHHhC--CCCCcce
Q 023049 121 ESVEWEHKSKV-PGKMHACGH---DAHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEEGGG-GAKKMLDAG--ALENVEA 193 (288)
Q Consensus 121 ~~~~~pf~~~~-~G~~~g~G~---dg~~a~~l~a~~~L~~~~~~~~g~v~~i~~~dEE~g~-Ga~~l~~~g--~~~~~d~ 193 (288)
.|+.+||++.+ +|++||||. +++++++++|++.|++. .++++|.|+|++|||.++ ++..+++.. ....+|+
T Consensus 81 ~w~~~Pf~~~~~~g~lyGrG~~DmKgg~aa~l~A~~~l~~~--~~~~~i~l~~~~dEE~g~~~~~~~~~~~~~~~~~~~~ 158 (438)
T PRK08554 81 EWNTEPFKLTVKGDKAYGRGSADDKGNVASVMLALKELSKE--PLNGKVIFAFTGDEEIGGAMAMHIAEKLREEGKLPKY 158 (438)
T ss_pred ccccCCceeEEECCEEEECCcccchHHHHHHHHHHHHHHhc--CCCCCEEEEEEcccccCccccHHHHHHHHhcCCCCCE
Confidence 36788999875 689999994 58999999999999874 367899999999999874 444665531 1124799
Q ss_pred EEEEccCCCCCcceEEeecccc-----------ccce---eEEEEEEEecc-ccCCCCCCCCc--HHHHHHHHHHHHHH
Q 023049 194 IFGLHVSSLFPVGTVASRPGPT-----------LAAG---GFFEAVINGKG-GHAAIPQHTID--PIVAASNVIVSLQH 255 (288)
Q Consensus 194 ~i~~e~~~~~~~g~v~~~~g~~-----------~~G~---~~~~i~v~G~~-aHas~P~~g~N--AI~~~~~~i~~l~~ 255 (288)
+|+.||+...+ .+..++|.. ..|. .++.+++.|++ +|++.|..|+| |+..+++++.++..
T Consensus 159 ~iv~Ept~~~~--~~~~~kg~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Ha~~~~~g~~~~~i~~~~~~~~~~~~ 235 (438)
T PRK08554 159 MINADGIGMKP--IIRRRKGFGVTIRVPSEKVKVKGKLREQTFEIRTPVVETRHAAYFLPGVDTHPLIAASHFLRESNV 235 (438)
T ss_pred EEEeCCCCCcc--hhhcCCceEEEEEecccccccccceeeeeeceeecccCccccccccCCcCchHHHHHHHHHhhcCc
Confidence 99999975221 011111100 0122 46667777776 99998876665 58888887776654
No 61
>PRK13799 unknown domain/N-carbamoyl-L-amino acid hydrolase fusion protein; Provisional
Probab=99.92 E-value=1.5e-23 Score=208.31 Aligned_cols=214 Identities=16% Similarity=0.197 Sum_probs=162.6
Q ss_pred HHHHHHHHHhHhCCCC-------------CCChHHHHHHHHHHHHhCCCC-eEeecCCceEEEEECCC--CCcEEEEEee
Q 023049 50 YWMVNIRRKIHENPEL-------------GFQEFETSKLIRAELDQMGIP-YKFPVAVTGVVGYIGTG--QPPFVALRAD 113 (288)
Q Consensus 50 ~~li~~~~~L~~iPs~-------------s~~E~~~~~~i~~~l~~~G~~-~~~~~~~~nvia~~~~~--~~~~i~l~aH 113 (288)
+++++.+.+|-+|+.+ |..+.++++|+.+||+++|++ ++.+. -.||++++++. +.|.|++.+|
T Consensus 181 ~r~~~~l~~l~~~~~~~~~~~~g~~R~~~s~~~~~~~~~~~~~~~~~Gl~~v~~D~-~gNv~~~~~g~~~~~p~v~~gSH 259 (591)
T PRK13799 181 ADVMDWAEDIAAHSDPGYADEGALTCTYLSDAHRACANQISDWMRDAGFDEVEIDA-VGNVVGRYKAADDDAKTLITGSH 259 (591)
T ss_pred HHHHHHHHHHHhccCCCCCCCCceEeeeCCHHHHHHHHHHHHHHHHcCCCeEeECC-CCCEEEEcCCCCCCCCeEEEecc
Confidence 4566777777777532 334678999999999999998 88754 47999999764 3699999999
Q ss_pred cccccCCCCCCCCccccCCCceecCCchHHHHHHHHHHHHHHhccCCCCceEEEEEEcCCCCc------chHHHHH----
Q 023049 114 MDALAMEESVEWEHKSKVPGKMHACGHDAHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEEGG------GGAKKML---- 183 (288)
Q Consensus 114 ~DtVP~~~~~~~pf~~~~~G~~~g~G~dg~~a~~l~a~~~L~~~~~~~~g~v~~i~~~dEE~g------~Ga~~l~---- 183 (288)
|||||.+ |+.+|+ .+++++|.+++.|++.+..++++|.|++.++||+. .|++.+.
T Consensus 260 lDTV~~g------------G~~DG~---~Gv~a~l~~~~~l~~~~~~~~~~i~vi~~~~EEg~rF~~~~~GS~~~~G~~~ 324 (591)
T PRK13799 260 YDTVRNG------------GKYDGR---EGIFLAIACVKELHEQGERLPFHFEVIAFAEEEGQRFKATFLGSGALIGDFN 324 (591)
T ss_pred ccccCCC------------CccccH---HHHHHHHHHHHHHHHcCCCCCCCeEEEEecCCCccCCCccccchHHHhCCCh
Confidence 9999853 555555 47888999999999999999999999999999973 3666664
Q ss_pred ----H----hCC----------C------------CCcceEEEEccCCC-------CCcceEEeeccccccceeEEEEEE
Q 023049 184 ----D----AGA----------L------------ENVEAIFGLHVSSL-------FPVGTVASRPGPTLAAGGFFEAVI 226 (288)
Q Consensus 184 ----~----~g~----------~------------~~~d~~i~~e~~~~-------~~~g~v~~~~g~~~~G~~~~~i~v 226 (288)
+ .|. + .++++.+.+|.+-+ .+.|.+.. .+|..+|+|++
T Consensus 325 ~~~~~~~d~~G~~~~~~l~~~g~~~~~~~~~~~~~~~~~a~~ElHIEQgp~Le~~~~~igvV~g-----~~G~~~~~Itv 399 (591)
T PRK13799 325 MELLDIKDADGISLREAIQHAGHCIDAIPKIARDPADVLGFIEVHIEQGPVLLELDIPLGIVTS-----IAGSARYICEF 399 (591)
T ss_pred HHHHhccCCCCCCHHHHHHHcCCChhhccccccCCCCccEEEEEEeCCCHHHHHCCCcEEEEee-----eccceEEEEEE
Confidence 1 121 0 13556777777521 33444332 35789999999
Q ss_pred EeccccCCC-CC-CCCcHHHHHHHHHHHHHHHhhcccCCCCCceEEEEEEecC-CCCCccccc
Q 023049 227 NGKGGHAAI-PQ-HTIDPIVAASNVIVSLQHLVSREADPLDSQVVVSLMSDLL-YEPHKTDRK 286 (288)
Q Consensus 227 ~G~~aHas~-P~-~g~NAI~~~~~~i~~l~~~~~~~~~~~~~~t~~v~~I~gG-~~~n~~~~~ 286 (288)
+|+++|++. |+ .+.|||.+++++|..++++..+. +....++|||.|+++ -.+|++|+.
T Consensus 400 ~GkaaHag~~Pm~~r~dAi~aaa~ii~~l~~~~~~~--~~~~~v~tVG~I~~~~ga~NvIP~~ 460 (591)
T PRK13799 400 IGMASHAGTTPMDMRKDAAAAAAEIALYIEKRAAQD--QHASLVATMGQLNVPSGSTNVIPGR 460 (591)
T ss_pred EEECCCCCCCChhhchhHHHHHHHHHHHHHHHHHhc--CCCCcEEEEEEEEecCCCCceECCE
Confidence 999999995 64 58999999999999999875432 223468999999953 389999985
No 62
>PRK13590 putative bifunctional OHCU decarboxylase/allantoate amidohydrolase; Provisional
Probab=99.91 E-value=7.2e-23 Score=203.45 Aligned_cols=212 Identities=15% Similarity=0.154 Sum_probs=157.5
Q ss_pred HHHHHHHHHhHhCCCC-------------CCChHHHHHHHHHHHHhCCC-CeEeecCCceEEEEECCC-C-CcEEEEEee
Q 023049 50 YWMVNIRRKIHENPEL-------------GFQEFETSKLIRAELDQMGI-PYKFPVAVTGVVGYIGTG-Q-PPFVALRAD 113 (288)
Q Consensus 50 ~~li~~~~~L~~iPs~-------------s~~E~~~~~~i~~~l~~~G~-~~~~~~~~~nvia~~~~~-~-~~~i~l~aH 113 (288)
+++++.+.+|-+|+.+ |..+.++++|+.+||+++|+ ++..+. -.|+++++++. + .|.|++.+|
T Consensus 181 ~r~~~~~~~l~~~~~~~~~~~~g~~R~~~s~~~~~~~~~l~~~~~~~Gl~~v~~D~-~GNl~~~~~g~~~~~~~v~~gsH 259 (591)
T PRK13590 181 NDVWDWAERLAAHSDPGYAEKGQLTVTYLTDAHRACAQQISHWMRDCGFDEVHIDA-VGNVVGRYKGSTPQAKRLLTGSH 259 (591)
T ss_pred HHHHHHHHHHhcccCCCCCCCCceeeeeCCHHHHHHHHHHHHHHHHcCCCeeeECC-CCCEEEEecCCCCCCCeEEEecc
Confidence 3566677777777553 33467899999999999999 877654 47999999764 3 489999999
Q ss_pred cccccCCCCCCCCccccCCCceecCCchHHHHHHHHHHHHHHhccCCCCceEEEEEEcCCCCc------chHHH------
Q 023049 114 MDALAMEESVEWEHKSKVPGKMHACGHDAHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEEGG------GGAKK------ 181 (288)
Q Consensus 114 ~DtVP~~~~~~~pf~~~~~G~~~g~G~dg~~a~~l~a~~~L~~~~~~~~g~v~~i~~~dEE~g------~Ga~~------ 181 (288)
|||||.+ |+.+|. .+++++|.+++.|++.+..++++|.|++++|||++ .|++.
T Consensus 260 lDTV~~g------------G~~DG~---~Gv~a~lea~~~l~~~~~~~~~~i~vv~~~~EEg~rF~~~~~GS~~~~G~~~ 324 (591)
T PRK13590 260 YDTVRNG------------GKYDGR---LGIFVPMACVRELHRQGRRLPFGLEVVGFAEEEGQRYKATFLGSGALIGDFD 324 (591)
T ss_pred cccCCCC------------CCcccH---HHHHHHHHHHHHHHHcCCCCCCCeEEEEecCCccccCCccccchHHHhCCCh
Confidence 9999863 433333 57889999999999998888899999999999973 26664
Q ss_pred --HHH---------------hCC----C-------CCcceEEEEccCCC-------CCcceEEeeccccccceeEEEEEE
Q 023049 182 --MLD---------------AGA----L-------ENVEAIFGLHVSSL-------FPVGTVASRPGPTLAAGGFFEAVI 226 (288)
Q Consensus 182 --l~~---------------~g~----~-------~~~d~~i~~e~~~~-------~~~g~v~~~~g~~~~G~~~~~i~v 226 (288)
+++ .|+ + +++.+.+.+|.+.+ .+.|.+.. .+|..+|+|++
T Consensus 325 ~~~~~~~d~~g~~~~~al~~~g~~~~~~~~~~~~~~~~~a~~ElHiEqg~~Le~~~~~~gvV~~-----~~G~~~~~v~v 399 (591)
T PRK13590 325 PAWLDQKDADGITMREAMQHAGLCIDDIPKLRRDPARYLGFVEVHIEQGPVLNELDLPLGIVTS-----INGSVRYVGEM 399 (591)
T ss_pred HHHHhccCCCCCCHHHHHHHcCCChhhccccccCCCCccEEEEEEeCCCHHHHHCCCceEEEee-----eeccEEEEEEE
Confidence 222 121 0 13456777776532 12333322 35789999999
Q ss_pred EeccccCCC-CCC-CCcHHHHHHHHHHHHHHHhhcccCCCCCceEEEEEEec-CCCCCccccc
Q 023049 227 NGKGGHAAI-PQH-TIDPIVAASNVIVSLQHLVSREADPLDSQVVVSLMSDL-LYEPHKTDRK 286 (288)
Q Consensus 227 ~G~~aHas~-P~~-g~NAI~~~~~~i~~l~~~~~~~~~~~~~~t~~v~~I~g-G~~~n~~~~~ 286 (288)
+|+++|+|. |+. +.|||..+++++..++++... ....++|||.|++ |..+|++|+.
T Consensus 400 ~GkaaHag~~P~~~r~dAi~aaa~~i~~l~~~~~~----~~~~v~tVG~i~~~Gg~~NVIP~~ 458 (591)
T PRK13590 400 IGMASHAGTTPMDRRRDAAAAVAELALYVEQRAAQ----DGDSVGTVGMLEVPGGSINVVPGR 458 (591)
T ss_pred EeECCCCCCCCchhcccHHHHHHHHHHHHHHHHhc----CCCcEEEEEEEEECCCCCceECCE
Confidence 999999994 655 689999999999999886432 1245789999984 5589999985
No 63
>KOG2276 consensus Metalloexopeptidases [Amino acid transport and metabolism]
Probab=99.73 E-value=8.2e-17 Score=148.16 Aligned_cols=192 Identities=19% Similarity=0.249 Sum_probs=150.0
Q ss_pred hHHHHHhcCCCcHHHHHHHHHHhHhCCCCCCCh------HHHHHHHHHHHHhCCCCeEeec-------------CCceEE
Q 023049 37 VKFLDFAKKPEIFYWMVNIRRKIHENPELGFQE------FETSKLIRAELDQMGIPYKFPV-------------AVTGVV 97 (288)
Q Consensus 37 ~~i~~~~~~~~~~~~li~~~~~L~~iPs~s~~E------~~~~~~i~~~l~~~G~~~~~~~-------------~~~nvi 97 (288)
.++.++++.++ ++++..+|+.++|||.+... ++.++|+++.|+++|-+++..+ ..+-|.
T Consensus 5 ~~~fq~id~~~--de~~~~L~e~v~iqsvs~dp~~r~~v~rm~~~~~~~l~~lG~~~~l~dlg~q~~~~g~~v~lPpvvl 82 (473)
T KOG2276|consen 5 TKVFQSIDLNK--DEFINTLREAVAIQSVSADPTKRLEVRRMADWLRDYLTKLGAPLELVDLGYQSLPDGQIVPLPPVVL 82 (473)
T ss_pred HHHHHHhhccH--HHHHHHHHHHhcccccccCccccHHHHHHHHHHHHHHHHhCCceeeeecccCCCCCCcccccChhhh
Confidence 46889999999 99999999999999987643 5689999999999997665421 123456
Q ss_pred EEECCC-CCcEEEEEeecccccCCC---CCCCCccccC-CCceecCCc-h--HHHHHHHHHHHHHHhccCCCCceEEEEE
Q 023049 98 GYIGTG-QPPFVALRADMDALAMEE---SVEWEHKSKV-PGKMHACGH-D--AHVAMLLGAAKMLQVFRHEIKGTIVLVF 169 (288)
Q Consensus 98 a~~~~~-~~~~i~l~aH~DtVP~~~---~~~~pf~~~~-~G~~~g~G~-d--g~~a~~l~a~~~L~~~~~~~~g~v~~i~ 169 (288)
+++|.. +++++++-||+|++|... |..+||..++ +|+++|||. | |++++-+.|++++++.+..+.-+|.|+|
T Consensus 83 ~~~Gsdp~KktvlvYgHlDVqpA~~~DgW~TdPF~Lt~~~GkL~GRG~TDdkGPv~~wi~av~a~~~~g~~lpvnv~f~~ 162 (473)
T KOG2276|consen 83 GVLGSDPSKKTVLVYGHLDVQPANLEDGWNTDPFTLTEDDGKLFGRGATDDKGPVLSWIHAVKALQQLGIDLPVNVVFVF 162 (473)
T ss_pred hcccCCCCcceEEEEeeeeeeecCCCCCCcCCCeEEEEECCEEeccCcCCCCccchHHHHHHHHHHHhCccccceEEEEE
Confidence 666665 368999999999999863 5677999876 699999996 3 9999999999999999999999999999
Q ss_pred EcCCCCcc-hHHHHHHh---CCCCCcceEEEEccCCCCCcc--eEEeeccccccceeEEEEEEEe--ccccCCC
Q 023049 170 QPAEEGGG-GAKKMLDA---GALENVEAIFGLHVSSLFPVG--TVASRPGPTLAAGGFFEAVING--KGGHAAI 235 (288)
Q Consensus 170 ~~dEE~g~-Ga~~l~~~---g~~~~~d~~i~~e~~~~~~~g--~v~~~~g~~~~G~~~~~i~v~G--~~aHas~ 235 (288)
-.-||.|+ |-..+++. .++.++|++.+-.. +..| +-+...| .+|++.|.|+|+| +-.||+.
T Consensus 163 EgmEEsgS~~L~~l~~~~kD~~~~~vD~vciSdn---yWlg~kkPcltyG--lRG~~yf~i~v~g~~~DlHSGv 231 (473)
T KOG2276|consen 163 EGMEESGSEGLDELIEKEKDKFFKDVDFVCISDN---YWLGTKKPCLTYG--LRGVIYFQIEVEGPSKDLHSGV 231 (473)
T ss_pred EechhccCccHHHHHHHHhhhhhccCCEEEeeCc---eeccCCCcccccc--cccceeEEEEEeeccccccccc
Confidence 99999994 66665543 45667887766443 2223 2233334 3589999999999 6789984
No 64
>PRK10199 alkaline phosphatase isozyme conversion aminopeptidase; Provisional
Probab=99.57 E-value=1e-13 Score=128.40 Aligned_cols=129 Identities=19% Similarity=0.220 Sum_probs=96.4
Q ss_pred HHHHHHHhHhCCCCCCChHHHHHHHHHHHHhCCCCeEee-----------c--------CCceEEEEECCCCCcEEEEEe
Q 023049 52 MVNIRRKIHENPELGFQEFETSKLIRAELDQMGIPYKFP-----------V--------AVTGVVGYIGTGQPPFVALRA 112 (288)
Q Consensus 52 li~~~~~L~~iPs~s~~E~~~~~~i~~~l~~~G~~~~~~-----------~--------~~~nvia~~~~~~~~~i~l~a 112 (288)
+..+...+-.-+.-+..|.++++||+++|+++|++++.. . ...|||+.+++...+.|++.|
T Consensus 37 ~~~ia~~~~gR~~gS~~E~~aA~yL~~~f~~lG~~v~~q~f~~~~~~~~~~g~~~~~~~~g~nVIa~~~G~~~~~Ill~A 116 (346)
T PRK10199 37 ARHIATFFPGRMTGSPAEMLSADYLRQQFQQMGYQSDIRTFNSRYIYTARDNRKNWHNVTGSTVIAAHEGKAPQQIIIMA 116 (346)
T ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHCCCceEeeeccccceeecccccccccCCccceEEEEECCCCCCeEEEEE
Confidence 444444555556667789999999999999999987531 0 135799999876568899999
Q ss_pred ecccccCCCCCCCCccccCCCceecCCc---hHHHHHHHHHHHHHHhccCCCCceEEEEEEcCCCCc-chHHHHHHh
Q 023049 113 DMDALAMEESVEWEHKSKVPGKMHACGH---DAHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEEGG-GGAKKMLDA 185 (288)
Q Consensus 113 H~DtVP~~~~~~~pf~~~~~G~~~g~G~---dg~~a~~l~a~~~L~~~~~~~~g~v~~i~~~dEE~g-~Ga~~l~~~ 185 (288)
|+|||++.....++++.. | .++.|. .+++|++|.+++.|++. .++.+|.|+++++||.| .|+++++++
T Consensus 117 H~DTV~p~~~~~~~~~~~--g-~~~~GA~DnasGvA~lLe~ar~l~~~--~~~~~I~fv~~~~EE~Gl~GS~~~~~~ 188 (346)
T PRK10199 117 HLDTYAPQSDADVDANLG--G-LTLQGMDDNAAGLGVMLELAERLKNV--PTEYGIRFVATSGEEEGKLGAENLLKR 188 (346)
T ss_pred EcCcCCCCCCCccccCCC--C-cccCCccccHHHHHHHHHHHHHHhhC--CCCCcEEEEEECCcccCcHHHHHHHHh
Confidence 999997433233344322 2 344554 37899999999999865 36779999999999999 699999986
No 65
>PF01546 Peptidase_M20: Peptidase family M20/M25/M40 This family only corresponds to M20 family; InterPro: IPR002933 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of proteins contains the metallopeptidases and non-peptidase homologues (amidohydrolases) that belong to the MEROPS peptidase family M20 (clan MH) []. The peptidases of this clan have two catalytic zinc ions at the active site, bound by His/Asp, Asp, Glu, Asp/Glu and His. The catalysed reaction involves the release of an N-terminal amino acid, usually neutral or hydrophobic, from a polypeptide []. The peptidase M20 family has four sub-families: M20A - type example, glutamate carboxypeptidase from Pseudomonas sp. RS16 (P06621 from SWISSPROT) M20B - type example, peptidase T from Escherichia coli (P29745 from SWISSPROT) M20C - type example, X-His dipeptidase from E. coli (P15288 from SWISSPROT) M20D - type example, carboxypeptidase Ss1 from Sulfolobus solfataricus (P80092 from SWISSPROT) ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3T68_A 3T6M_A 2F8H_A 3GB0_A 3IO1_B 2ZOF_A 2ZOG_B 3MRU_B 3N5F_A 1Z2L_B ....
Probab=99.52 E-value=2.5e-14 Score=121.27 Aligned_cols=92 Identities=28% Similarity=0.385 Sum_probs=74.3
Q ss_pred EEEeecccccC-CCCCCCCccccC-CCceecCCc-h--HHHHHHHHHHHHHHhccCCCCceEEEEEEcCCCCcc--hHHH
Q 023049 109 ALRADMDALAM-EESVEWEHKSKV-PGKMHACGH-D--AHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEEGGG--GAKK 181 (288)
Q Consensus 109 ~l~aH~DtVP~-~~~~~~pf~~~~-~G~~~g~G~-d--g~~a~~l~a~~~L~~~~~~~~g~v~~i~~~dEE~g~--Ga~~ 181 (288)
+|.+||||||. ..|+.+||.... +|++||||+ | +++++++.|++.|++.+..++++|.|+|+++||.++ |++.
T Consensus 1 ll~~H~Dtv~~~~~w~~~pf~~~~~~~~~~grG~~D~k~~~~~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~g~~~ 80 (189)
T PF01546_consen 1 LLYAHMDTVPGPEGWKHDPFELSIEDGRLYGRGADDMKGGIAAMLAALKALKESGDDLPGNIIFLFTPDEEIGSIGGAKH 80 (189)
T ss_dssp EEEEES-BCSTGGGSSSSTTSEEEETTEEESTTTTTTHHHHHHHHHHHHHHHHTTTTCSSEEEEEEESTCCGTSTTHHHH
T ss_pred CccccccccCCcCcCCCCCcccEEECCEEEcCCcCCCcccHHHHHHHHHHHHhccccccccccccccccccCCCcchhhh
Confidence 68999999993 335777998765 689999997 3 788999999999998888999999999999999994 9999
Q ss_pred HHHhCC--CCCcceEEEEccC
Q 023049 182 MLDAGA--LENVEAIFGLHVS 200 (288)
Q Consensus 182 l~~~g~--~~~~d~~i~~e~~ 200 (288)
+++++. ..++|+++++|++
T Consensus 81 l~~~~~~~~~~~~~~~~~e~~ 101 (189)
T PF01546_consen 81 LLEEGAFFGLHPDYVIIGEPT 101 (189)
T ss_dssp HHHHCEEEEEEESEEEECECE
T ss_pred hhhhccccccccccccccccc
Confidence 999842 1136667766654
No 66
>COG4187 RocB Arginine degradation protein (predicted deacylase) [Amino acid transport and metabolism]
Probab=99.51 E-value=3.5e-13 Score=125.53 Aligned_cols=202 Identities=17% Similarity=0.184 Sum_probs=143.6
Q ss_pred HHHHHHHHHhHhCCCCCC--ChHHHHHHHHHHHHhCCCCeEee----------c--CCceEEEEECCC-CCcEEEEEeec
Q 023049 50 YWMVNIRRKIHENPELGF--QEFETSKLIRAELDQMGIPYKFP----------V--AVTGVVGYIGTG-QPPFVALRADM 114 (288)
Q Consensus 50 ~~li~~~~~L~~iPs~s~--~E~~~~~~i~~~l~~~G~~~~~~----------~--~~~nvia~~~~~-~~~~i~l~aH~ 114 (288)
+++.+++-+|++-||+++ .|...+++|...|.++-+--+.+ + +|.||+|-++|+ +.++|++.||+
T Consensus 8 e~v~~lt~~LV~~~SvtgT~GE~a~ad~l~~vL~~~pYFqehped~~~~pi~nDpygR~nv~AlVrg~~~k~tvvl~gH~ 87 (553)
T COG4187 8 ERVRALTLSLVSWPSVTGTPGEGAFADRLLGVLGELPYFQEHPEDLWLQPIHNDPYGRRNVFALVRGGTSKRTVVLHGHF 87 (553)
T ss_pred HHHHHHHHHHeeccccCCCcccccHHHHHHHHHhcCchhhhChHhhcccCCCCCccccceeEEEEecCCCCceEEEeecc
Confidence 678999999999999976 47889999999999876422111 1 578999999875 56899999999
Q ss_pred ccccCCC---CCCCCccc---------------c---C----CCceecCCc-h--HHHHHHHHHHHHHHhccCCCCceEE
Q 023049 115 DALAMEE---SVEWEHKS---------------K---V----PGKMHACGH-D--AHVAMLLGAAKMLQVFRHEIKGTIV 166 (288)
Q Consensus 115 DtVP~~~---~~~~pf~~---------------~---~----~G~~~g~G~-d--g~~a~~l~a~~~L~~~~~~~~g~v~ 166 (288)
|||...+ ....-|.+ + . .+.+.|||. | .++|+-|++++.+.+. ....|+|.
T Consensus 88 DtV~iedYg~lKd~Afdp~~ll~~~i~~~e~~~erv~~Dl~SGDwlfGRGa~DMKsGlav~la~L~~fa~~-~~~~GNlL 166 (553)
T COG4187 88 DTVSIEDYGELKDLAFDPLALLDALIESLELREERVLRDLESGDWLFGRGALDMKSGLAVHLACLEEFAAR-TDRQGNLL 166 (553)
T ss_pred ceeecccccchhhhccCHHHHHHHHHHhhccCHHHHhhhhhccCcccCCCchhhhhhhHHHHHHHHHHhhC-CCCCCcEE
Confidence 9998643 22222332 1 1 136789995 4 7888888888888776 46899999
Q ss_pred EEEEcCCCCc-chHHHHHHh--CCCC--Ccc--eEEEEccCCCCC---cceEEeeccccccceeEEEEEEEeccccCCCC
Q 023049 167 LVFQPAEEGG-GGAKKMLDA--GALE--NVE--AIFGLHVSSLFP---VGTVASRPGPTLAAGGFFEAVINGKGGHAAIP 236 (288)
Q Consensus 167 ~i~~~dEE~g-~Ga~~l~~~--g~~~--~~d--~~i~~e~~~~~~---~g~v~~~~g~~~~G~~~~~i~v~G~~aHas~P 236 (288)
|+.+||||.. .|.+..+.. ++-+ +++ ++|..+++...- .|.... .|. .|..---.-|.|+..|++.|
T Consensus 167 f~a~pdEE~~s~G~r~a~~~L~~L~kk~~l~~~~~IN~D~~~~~~dGd~~ryvY-tGt--iGKLLp~f~vvG~etHvG~~ 243 (553)
T COG4187 167 FMAVPDEEVESRGMREARPALPGLKKKFDLEYTAAINLDVTSDQGDGDQGRYVY-TGT--IGKLLPFFFVVGCETHVGYP 243 (553)
T ss_pred EEeccchhhhcccHHHHHHHHHHHHHhhCceEEEEeccccccCCCCCccceEEE-ecc--chhhcceeEEEeeccccCCc
Confidence 9999999987 577665432 1111 233 445555532111 122222 132 35566667889999999999
Q ss_pred CCCCcHHHHHHHHHHHHHH
Q 023049 237 QHTIDPIVAASNVIVSLQH 255 (288)
Q Consensus 237 ~~g~NAI~~~~~~i~~l~~ 255 (288)
..|+||-..+++++.+|+-
T Consensus 244 f~Gvnan~maSei~~~le~ 262 (553)
T COG4187 244 FEGVNANFMASEITRRLEL 262 (553)
T ss_pred ccCCCHHHHHHHHHHHhhc
Confidence 9999999999999999874
No 67
>TIGR03106 trio_M42_hydro hydrolase, peptidase M42 family. This model describes a subfamily of MEROPS peptidase family M42, a glutamyl aminopeptidase family that also includes the cellulase CelM from Clostridium thermocellum and deblocking aminopeptidases that can remove acylated amino acids. Members of this family occur in a three gene cassette with an amidotransferase (TIGR03104)in the asparagine synthase (glutamine-hydrolyzing) family, and a probable acetyltransferase (TIGR03103) in the GNAT family.
Probab=99.49 E-value=6.7e-13 Score=123.82 Aligned_cols=129 Identities=19% Similarity=0.192 Sum_probs=101.5
Q ss_pred HHHHHHHHHhHhCCCCCCChHHHHHHHHHHHHhCCCCeEeecCCceEEEEECC-CCCcEEEEEeecccccC---------
Q 023049 50 YWMVNIRRKIHENPELGFQEFETSKLIRAELDQMGIPYKFPVAVTGVVGYIGT-GQPPFVALRADMDALAM--------- 119 (288)
Q Consensus 50 ~~li~~~~~L~~iPs~s~~E~~~~~~i~~~l~~~G~~~~~~~~~~nvia~~~~-~~~~~i~l~aH~DtVP~--------- 119 (288)
+.+++++++|+++|+++++|.++++++.++|+++|++++.+ ...|+++.+.+ ..+|+|+|.||||+|..
T Consensus 3 ~~~~~lLk~Lv~~~s~SG~E~~V~~~l~~~l~~~g~ev~~D-~~Gnlia~~~g~~~~~~v~l~aHmDevG~~V~~I~~~G 81 (343)
T TIGR03106 3 DYLTETLLALLAIPSPTGFTDAVVRYVAERLEDLGIEYELT-RRGAIRATLPGREATPARAVVTHLDTLGAMVRELKDNG 81 (343)
T ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCeEEEC-CCeEEEEEECCCCCCCeEEEEEeeccccceeeEECCCC
Confidence 56899999999999999999999999999999999998864 56899998866 34589999999999864
Q ss_pred -------CCCC---------------C------------------------CCcc-----------c-------------
Q 023049 120 -------EESV---------------E------------------------WEHK-----------S------------- 129 (288)
Q Consensus 120 -------~~~~---------------~------------------------~pf~-----------~------------- 129 (288)
|.+. . .++. +
T Consensus 82 ~l~~~~iGG~~~~~l~g~~v~i~t~~g~~~Gvi~~~~~~~H~~~~~~~~~~~~~~~~~l~iDiG~~s~ee~~~lGV~~Gd 161 (343)
T TIGR03106 82 RLELVPIGHWSARFAEGARVTIFTDSGEFRGTILPLKASGHAFNEEIDSQPTGWDHVEVRVDARASCRADLVRLGISVGD 161 (343)
T ss_pred eEEEEecCCCcccceeCCEEEEEeCCCeEEEEECCCCCCCccCChHHccCCCCCcccEEEEECCcCCHHHHHHcCCCCCC
Confidence 1000 0 0011 0
Q ss_pred ----------cCCCceecCCch--HHHHHHHHHHHHHHhccCCCCceEEEEEEcCCCCcchH
Q 023049 130 ----------KVPGKMHACGHD--AHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEEGGGGA 179 (288)
Q Consensus 130 ----------~~~G~~~g~G~d--g~~a~~l~a~~~L~~~~~~~~g~v~~i~~~dEE~g~Ga 179 (288)
..+|+++|++.| +++++++.+++.|++.+..++.+|+++|+++||.|.|+
T Consensus 162 ~v~~~~~~~~~~~~~i~gr~~D~K~G~a~~l~~~~~l~~~~~~~~~~v~~~~t~qEEvG~ga 223 (343)
T TIGR03106 162 FVAFDPQPEFLANGFIVSRHLDDKAGVAALLAALKAIVEHKVPLPVDVHPLFTITEEVGSGA 223 (343)
T ss_pred EEEECCccEEecCCEEEEEecccHHhHHHHHHHHHHHHhcCCCCCceEEEEEECCcccCccc
Confidence 002345566654 79999999999999877678899999999999999664
No 68
>PRK09961 exoaminopeptidase; Provisional
Probab=99.28 E-value=1.2e-10 Score=108.84 Aligned_cols=143 Identities=18% Similarity=0.281 Sum_probs=105.5
Q ss_pred HHHHHHhHhCCCCCCChHHHHHHHHHHHHhCCCCeEeecCCceEEEEECCCCCcEEEEEeecccccC-----CC-CC---
Q 023049 53 VNIRRKIHENPELGFQEFETSKLIRAELDQMGIPYKFPVAVTGVVGYIGTGQPPFVALRADMDALAM-----EE-SV--- 123 (288)
Q Consensus 53 i~~~~~L~~iPs~s~~E~~~~~~i~~~l~~~G~~~~~~~~~~nvia~~~~~~~~~i~l~aH~DtVP~-----~~-~~--- 123 (288)
++++++|+++|++|++|.++++++.++|+++|++++.+ ...|+++++++.++|+|+|.||||+|+. .+ ..
T Consensus 3 ~~~L~~L~~~~s~sG~E~~v~~~i~~~l~~~~~~v~~D-~~Gnvi~~~~g~~~~~v~l~aHmDevg~~V~~I~~~G~l~~ 81 (344)
T PRK09961 3 LSLLKALSEADAIASSEQEVRQILLEEADRLQKEVRFD-GLGSVLIRLNESTGPKVMICAHMDEVGFMVRSISREGAIDV 81 (344)
T ss_pred HHHHHHHHhCCCCCCChHHHHHHHHHHHHhhCCEEEEC-CCCCEEEEEcCCCCCEEEEEeccceeceEEEEECCCceEEE
Confidence 46799999999999999999999999999999988764 6689999886644589999999999974 11 00
Q ss_pred ----C-CC------------------------------ccc---------c-------C-CC---------------cee
Q 023049 124 ----E-WE------------------------------HKS---------K-------V-PG---------------KMH 136 (288)
Q Consensus 124 ----~-~p------------------------------f~~---------~-------~-~G---------------~~~ 136 (288)
. +| +.. . + .| .+.
T Consensus 82 ~~vGG~~~~~~~~~~v~i~~~~g~~i~Gvi~~~~~~~~~~~l~iDiG~~s~ee~~~~GI~~Gd~v~~~~~~~~~~~~~i~ 161 (344)
T PRK09961 82 LPVGNVRMAARQLQPVRITTREECKIPGLLNGDRQGNDVSAMRVDIGARSYDEVMQAGIRPGDRVTFDTTFQVLPHQRVM 161 (344)
T ss_pred EeCCCccccccCCCEEEEEeCCCCEeeEEEChhhcCCCHHHEEEEcCCCCHHHHHhcCCCCCCEEEEcceeEEecCCEEE
Confidence 0 01 000 0 0 01 011
Q ss_pred cCCch--HHHHHHHHHHHHHHhccCCCCceEEEEEEcCCCCc-chHHHHHHhCCCCCcceEEEEccCC
Q 023049 137 ACGHD--AHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEEGG-GGAKKMLDAGALENVEAIFGLHVSS 201 (288)
Q Consensus 137 g~G~d--g~~a~~l~a~~~L~~~~~~~~g~v~~i~~~dEE~g-~Ga~~l~~~g~~~~~d~~i~~e~~~ 201 (288)
|+.-| .++++++.+++.+++. ++..+|+++|+..||.| .|++..... + ++|.+|+.+.++
T Consensus 162 gkalDnR~g~~~lle~l~~l~~~--~~~~~v~~~~tvqEEvG~rGa~~aa~~--i-~pd~~I~vDv~~ 224 (344)
T PRK09961 162 GKAFDDRLGCYLLVTLLRELHDA--ELPAEVWLVASSSEEVGLRGGQTATRA--V-SPDVAIVLDTAC 224 (344)
T ss_pred EeechhhHhHHHHHHHHHHhhhc--CCCceEEEEEEcccccchHHHHHHHhc--c-CCCEEEEEeccC
Confidence 22223 6788899999988754 46789999999999999 688776543 3 479999988764
No 69
>COG1363 FrvX Cellulase M and related proteins [Carbohydrate transport and metabolism]
Probab=99.26 E-value=1.3e-10 Score=107.98 Aligned_cols=146 Identities=22% Similarity=0.251 Sum_probs=108.0
Q ss_pred HHHHHHHHHhHhCCCCCCChHHHHHHHHHHHHhCCCCeEeecCCceEEEEECCCCC-cEEEEEeecccccC---------
Q 023049 50 YWMVNIRRKIHENPELGFQEFETSKLIRAELDQMGIPYKFPVAVTGVVGYIGTGQP-PFVALRADMDALAM--------- 119 (288)
Q Consensus 50 ~~li~~~~~L~~iPs~s~~E~~~~~~i~~~l~~~G~~~~~~~~~~nvia~~~~~~~-~~i~l~aH~DtVP~--------- 119 (288)
+++.+++++|.++|++|+.|.++.++++++|++++.+++.+ ...|++++.++.++ |.|++.||||+|-.
T Consensus 2 ~~~~~~LkeL~~~~gpsG~E~eVr~~~~~el~~~~~ev~~D-~lGnlia~~~g~~g~~~imi~AHmDEiG~mV~~I~~~G 80 (355)
T COG1363 2 EELLELLKELLEAPGPSGYEEEVRDVLKEELEPLGDEVEVD-RLGNLIAKKGGKNGPPKVMIAAHMDEIGFMVKEIEDDG 80 (355)
T ss_pred hHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHhCCceEEc-CCCcEEEEecCCCCCccEEEEeecceeeeeEEEECCCc
Confidence 56899999999999999999999999999999999998774 46799999988444 56999999999742
Q ss_pred -------CCCC---------------C----------CC--cccc----------------------------C-CC---
Q 023049 120 -------EESV---------------E----------WE--HKSK----------------------------V-PG--- 133 (288)
Q Consensus 120 -------~~~~---------------~----------~p--f~~~----------------------------~-~G--- 133 (288)
|.+. . .| ++.. + .|
T Consensus 81 ~Lr~~~IGG~~~~~~~gq~v~i~t~~g~~i~GvIg~~p~H~~~~~~~~~~~~~~~el~iDiga~skeea~~lGI~vGd~v 160 (355)
T COG1363 81 FLRFVPIGGWDPQVLEGQRVTIHTDKGKKIRGVIGSKPPHLLKEEAERKKPPEWDELFIDIGASSKEEAEELGIRVGDFV 160 (355)
T ss_pred eEEEEEcCCcChhhccCcEEEEEeCCCcEEeeeEcccCccccCccccccCCCchhhEEEECCcCCHHHHHhcCCCCCCEE
Confidence 1000 0 00 0000 0 00
Q ss_pred ------------ceecCCch--HHHHHHHHHHHHHHhccCCCCceEEEEEEcCCCCc-chHHHHHHhCCCCCcceEEEEc
Q 023049 134 ------------KMHACGHD--AHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEEGG-GGAKKMLDAGALENVEAIFGLH 198 (288)
Q Consensus 134 ------------~~~g~G~d--g~~a~~l~a~~~L~~~~~~~~g~v~~i~~~dEE~g-~Ga~~l~~~g~~~~~d~~i~~e 198 (288)
++-++.-| .+++++|.+++.| + +.++..+++++|++.||.| +|++..... + ++|.+|.++
T Consensus 161 ~~~~~~~~l~~~~i~skalDdR~gva~lle~lk~l-~-~~~~~~~vy~v~tvqEEVGlrGA~~~a~~--i-~pd~aiavd 235 (355)
T COG1363 161 VFDPRFRELANGRVVSKALDDRAGVAALLELLKEL-K-GIELPADVYFVASVQEEVGLRGAKTSAFR--I-KPDIAIAVD 235 (355)
T ss_pred EEcCceEEecCCcEEeeeccchHhHHHHHHHHHHh-c-cCCCCceEEEEEecchhhccchhhccccc--c-CCCEEEEEe
Confidence 00011123 6889999999999 4 5678899999999999999 688776543 2 478888887
Q ss_pred cCC
Q 023049 199 VSS 201 (288)
Q Consensus 199 ~~~ 201 (288)
.++
T Consensus 236 ~~~ 238 (355)
T COG1363 236 VTP 238 (355)
T ss_pred ccc
Confidence 764
No 70
>TIGR03107 glu_aminopep glutamyl aminopeptidase. This model represents the M42.001 clade within MEROPS family M42. M42 includes glutamyl aminopeptidase as in the present model, deblocking aminopeptidases as from Pyrococcus horikoshii and related species, and endo-1,4-beta-glucanase (cellulase M) as from Clostridium thermocellum. The current family includes
Probab=99.21 E-value=3.6e-10 Score=105.68 Aligned_cols=142 Identities=19% Similarity=0.222 Sum_probs=104.5
Q ss_pred HHHHHhHhCCCCCCChHHHHHHHHHHHHhCCCCeEeecCCceEEEEECCC--CCcEEEEEeecccccC------------
Q 023049 54 NIRRKIHENPELGFQEFETSKLIRAELDQMGIPYKFPVAVTGVVGYIGTG--QPPFVALRADMDALAM------------ 119 (288)
Q Consensus 54 ~~~~~L~~iPs~s~~E~~~~~~i~~~l~~~G~~~~~~~~~~nvia~~~~~--~~~~i~l~aH~DtVP~------------ 119 (288)
+++++|.++|++|++|.++++++.++|++++.+++.+ ...|+++..+++ .+|+|+|.||||+|+.
T Consensus 2 ~~L~~L~~~~gpSG~E~~v~~~i~~~l~~~~~~v~~D-~~GNvia~~~g~~~~~~~vml~AHmDeVGf~V~~I~~~G~l~ 80 (350)
T TIGR03107 2 NKIKEVTELQGTSGFEHPIRDYLRQDITPLVDQVETD-GLGGIFGIKESQVENAPRVMVAAHMDEVGFMVSQIKPDGTFR 80 (350)
T ss_pred hHHHHHHhCCCCCCCcHHHHHHHHHHHHhhCCEEEEC-CCCCEEEEecCCCCCCCEEEEEecccEeCEEEEEECCCceEE
Confidence 4689999999999999999999999999999887764 457999988663 3689999999999863
Q ss_pred ----CCCC--------------CC-----------C-c-c-----ccC--------C-C---------------------
Q 023049 120 ----EESV--------------EW-----------E-H-K-----SKV--------P-G--------------------- 133 (288)
Q Consensus 120 ----~~~~--------------~~-----------p-f-~-----~~~--------~-G--------------------- 133 (288)
|.+. .. | + + ... | |
T Consensus 81 ~~~vGG~~~~~l~gq~V~i~t~~g~~i~GViG~~~~Hl~~~~~~~~~~~~~~~l~IDiGa~skee~~~~GI~vGd~v~~~ 160 (350)
T TIGR03107 81 VVELGGWNPLVVSSQRFTLFTRKGKKYPVISGSVPPHLLRGSSGGPQLPAVSDILFDGGFTNKDEAWSFGVRPGDVIVPQ 160 (350)
T ss_pred EEeCCCccccccCCcEEEEEeCCCCEEEEEEeCCcccccChhhcccccCChhhEEEEeCCCCHHHHHhcCCCCCCEEEEC
Confidence 1000 00 0 0 0 000 0 0
Q ss_pred ----------ceecCCch--HHHHHHHHHHHHHHhccCCCCceEEEEEEcCCCCc-chHHHHHHhCCCCCcceEEEEccC
Q 023049 134 ----------KMHACGHD--AHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEEGG-GGAKKMLDAGALENVEAIFGLHVS 200 (288)
Q Consensus 134 ----------~~~g~G~d--g~~a~~l~a~~~L~~~~~~~~g~v~~i~~~dEE~g-~Ga~~l~~~g~~~~~d~~i~~e~~ 200 (288)
++.++.-| .++++++.+++.|++. +++.+|+++|++.||.| .||+..... + ++|.+|+.+.+
T Consensus 161 ~~~~~~~~~~~i~~kalDdR~g~a~l~e~l~~l~~~--~~~~~l~~~~tvqEEvG~rGA~~aa~~--i-~pD~aI~vDv~ 235 (350)
T TIGR03107 161 TETILTANGKNVISKAWDNRYGVLMILELLESLKDQ--ELPNTLIAGANVQEEVGLRGAHVSTTK--F-NPDIFFAVDCS 235 (350)
T ss_pred CCeEEEcCCCEEEEeccccHHHHHHHHHHHHHhhhc--CCCceEEEEEEChhhcCchhhhhHHhh--C-CCCEEEEEecC
Confidence 01122223 6888999999999864 46789999999999999 788875543 3 57999999886
Q ss_pred C
Q 023049 201 S 201 (288)
Q Consensus 201 ~ 201 (288)
+
T Consensus 236 ~ 236 (350)
T TIGR03107 236 P 236 (350)
T ss_pred C
Confidence 5
No 71
>PF07687 M20_dimer: Peptidase dimerisation domain This family only corresponds to M20 family; InterPro: IPR011650 This domain consists of 4 beta strands and two alpha helices which make up the dimerisation surface of members of the MEROPS peptidase family M20 []. This family includes a range of zinc exopeptidases: carboxypeptidases, dipeptidases and specialised aminopeptidases [].; GO: 0016787 hydrolase activity; PDB: 3GB0_A 2F7V_A 1R3N_C 2VL1_D 2V8V_C 1R43_B 2V8G_B 2V8H_D 2V8D_A 3PFE_A ....
Probab=99.21 E-value=3.1e-11 Score=93.88 Aligned_cols=70 Identities=20% Similarity=0.175 Sum_probs=62.3
Q ss_pred cceeEEEEEEEeccccCCCCCCCCcHHHHHHHHHHHHHHHhhccc-----CCCCCceEEEEEEecCCCCCccccc
Q 023049 217 AAGGFFEAVINGKGGHAAIPQHTIDPIVAASNVIVSLQHLVSREA-----DPLDSQVVVSLMSDLLYEPHKTDRK 286 (288)
Q Consensus 217 ~G~~~~~i~v~G~~aHas~P~~g~NAI~~~~~~i~~l~~~~~~~~-----~~~~~~t~~v~~I~gG~~~n~~~~~ 286 (288)
+|..+++|+++|+++|+|.|+.|+|||..++++|..|+++..+.. ...+..+++++.|+||.++|++|+.
T Consensus 4 ~G~~~~~i~~~G~~~H~s~~~~g~nai~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~gG~~~n~ip~~ 78 (111)
T PF07687_consen 4 RGVIWFRITITGKSGHSSRPEKGVNAIEAAARFLNALEELEFEWAFRPEEFFPGPPTLNIGSIEGGTAPNVIPDE 78 (111)
T ss_dssp EEEEEEEEEEESBSEETTSGGGSBCHHHHHHHHHHHHHHTTCHBTSTHHHCTCTSEEEEEEEEEEESSTTEESSE
T ss_pred CCEEEEEEEEEeeccCCCCccCccCHHHHHHHHHHHHHHhhcccccccccccccccceeEeecccCCcCCEECCE
Confidence 578999999999999999999999999999999999998854322 3456799999999999999999974
No 72
>COG2195 PepD Di- and tripeptidases [Amino acid transport and metabolism]
Probab=99.20 E-value=9.7e-11 Score=111.12 Aligned_cols=220 Identities=17% Similarity=0.153 Sum_probs=154.4
Q ss_pred HHHHHHHHHhHhCCCCCCChHHHHHHHHHHHHhCCCCeE-ee-------cC--Cce-EEEEECCC--CCcEEEEEeeccc
Q 023049 50 YWMVNIRRKIHENPELGFQEFETSKLIRAELDQMGIPYK-FP-------VA--VTG-VVGYIGTG--QPPFVALRADMDA 116 (288)
Q Consensus 50 ~~li~~~~~L~~iPs~s~~E~~~~~~i~~~l~~~G~~~~-~~-------~~--~~n-via~~~~~--~~~~i~l~aH~Dt 116 (288)
+++++.+.++++||+.|.+|.+++.++.+|++.+|+.++ .. +. ..| +.+++++. .-|.+.|.+||||
T Consensus 5 ~~l~~~F~~~~kI~~~S~~e~~~~p~~~~~~k~~~~~v~dE~~~i~~~~~a~~~~~~~~~~L~a~~d~V~~i~~~sh~Dt 84 (414)
T COG2195 5 ERLLDRFLELVKIPTQSKHEKAVAPSTVGQAKLLGLLVEDELGNIGLKKPATAGENYVPAVLQAHLDMVPEIGFISHHDT 84 (414)
T ss_pred HHHHHHHHHHeeCCCCCCCccccccccHHHHHHcCchhhhhhccccccccccCCCCeeeEEeeccccccccccccccccc
Confidence 678999999999999999999999999999999999982 21 11 123 45556654 2378999999999
Q ss_pred ccCC-------CC---------------------CCCCccccC--------CCceecCCch--HHHHHHHHHHHHHHhcc
Q 023049 117 LAME-------ES---------------------VEWEHKSKV--------PGKMHACGHD--AHVAMLLGAAKMLQVFR 158 (288)
Q Consensus 117 VP~~-------~~---------------------~~~pf~~~~--------~G~~~g~G~d--g~~a~~l~a~~~L~~~~ 158 (288)
+|-. ++ ...|..... +|.. ..|.| .+.+.++.++.++++..
T Consensus 85 ~~d~~~~~v~~~~l~~~~Gad~i~~~~~~a~L~~~~~P~~~~~t~~~ei~~dGa~-LLgaD~kAGia~i~~al~~~~~~~ 163 (414)
T COG2195 85 VPDPIGPNVNPQILKATLGADNIGLAIGLAVLSPEHFPLEVLLTGDEEITTDGAT-LLGADDKAGIAEIMTALSVLREKH 163 (414)
T ss_pred cccccccccCCceeeeccCcchhhhhhHHhhcCcccCCceeeeecceEEeccCcc-ccCCcchhHHHHHHHHHHHHhhcC
Confidence 9621 00 011111110 1211 23443 67888888999999653
Q ss_pred -CCCCceEEEEEEcCCCCc-chHHHHHHhCCCCCcceEEEEccCCCCCcceEEeeccccccceeEEEEEEEeccccCC-C
Q 023049 159 -HEIKGTIVLVFQPAEEGG-GGAKKMLDAGALENVEAIFGLHVSSLFPVGTVASRPGPTLAAGGFFEAVINGKGGHAA-I 235 (288)
Q Consensus 159 -~~~~g~v~~i~~~dEE~g-~Ga~~l~~~g~~~~~d~~i~~e~~~~~~~g~v~~~~g~~~~G~~~~~i~v~G~~aHas-~ 235 (288)
..++++|.+.|+++||.| .|+..+.-.. | .+++.+.+..+ +.|.+... . -+...+++++.|+..|++ .
T Consensus 164 ~~i~h~~i~~g~s~~Ee~g~rg~~~~~~a~-f-~a~~ay~iDGg---~~g~i~~e-a---~~~~~~~~~~~g~~~h~~~a 234 (414)
T COG2195 164 PEIPHGGIRGGFSPDEEIGGRGAANKDVAR-F-LADFAYTLDGG---PVGEIPRE-A---FNAAAVRATIVGPNVHPGSA 234 (414)
T ss_pred ccccccCeEEEecchHHhhhhhhhhccHHh-h-hcceeEecCCC---ccCeeeee-c---cchheeeeeeeccCcCccch
Confidence 457899999999999999 7887765442 2 36778887643 34655443 1 146789999999999999 4
Q ss_pred CCCCCcHHHHHHHHHHHHHHHhhcccCCCCCceEEEEEEecCCCCCccc
Q 023049 236 PQHTIDPIVAASNVIVSLQHLVSREADPLDSQVVVSLMSDLLYEPHKTD 284 (288)
Q Consensus 236 P~~g~NAI~~~~~~i~~l~~~~~~~~~~~~~~t~~v~~I~gG~~~n~~~ 284 (288)
+...+||++.+.+++..+... +.+ ..++.+.|..+++...|.+.
T Consensus 235 ~~~~i~a~~~a~e~~~~~~~~---~~~--e~t~~~~Gv~~~~~~~~~V~ 278 (414)
T COG2195 235 KGKMINALLLAAEFILELPLE---EVP--ELTEGPEGVYHLGDSTNSVE 278 (414)
T ss_pred HHHHhhHHHhhhhhhhcCCcc---ccc--ccccccceEEeccccccchh
Confidence 777899999888888766543 222 24667789999998888766
No 73
>PRK09864 putative peptidase; Provisional
Probab=99.20 E-value=5e-10 Score=104.77 Aligned_cols=140 Identities=18% Similarity=0.183 Sum_probs=102.2
Q ss_pred HHHHHHhHhCCCCCCChHHHHHHHHHHHHhCCCCeEeecCCceEEEEECCCCCcEEEEEeecccccC-------------
Q 023049 53 VNIRRKIHENPELGFQEFETSKLIRAELDQMGIPYKFPVAVTGVVGYIGTGQPPFVALRADMDALAM------------- 119 (288)
Q Consensus 53 i~~~~~L~~iPs~s~~E~~~~~~i~~~l~~~G~~~~~~~~~~nvia~~~~~~~~~i~l~aH~DtVP~------------- 119 (288)
.+++++|.++|++|+.|.++++++.++|+.++.++..+ ...|+++.. +.++|+|+|.||||+|+.
T Consensus 3 ~~~L~~L~~~~g~SG~E~~v~~~l~~~l~~~~dev~~D-~~GNli~~~-g~~~~kvml~AHmDevG~mV~~I~~~G~l~~ 80 (356)
T PRK09864 3 IELLQQLCEASAVSGDEQEVRDILINTLEPCVNEITFD-GLGSFVARK-GNKGPKVAVVGHMDEVGFMVTHIDESGFLRF 80 (356)
T ss_pred HHHHHHHHcCCCCCCchHHHHHHHHHHHHHhCCEEEEC-CCCCEEEEe-CCCCcEEEEEecccccCEEEEEECCCCeEEE
Confidence 46799999999999999999999999999999997764 457999986 333579999999999863
Q ss_pred ---CCCC--------------CC-Cccc------------c------------CC-C-----------------------
Q 023049 120 ---EESV--------------EW-EHKS------------K------------VP-G----------------------- 133 (288)
Q Consensus 120 ---~~~~--------------~~-pf~~------------~------------~~-G----------------------- 133 (288)
|.+. .. ++.. + +| |
T Consensus 81 ~~lGG~~~~~l~~q~V~i~t~~g~~v~GVig~~~~H~~~~~~~~k~~~~~~l~IDiGa~s~ee~~~~GV~vGD~v~~~~~ 160 (356)
T PRK09864 81 TTIGGWWNQSMLNHRVTIRTHKGVKIPGVIGSVAPHALTEKQKQQPLSFDEMFIDIGANSREEVEKRGVEIGDFISPEAN 160 (356)
T ss_pred EeCCCcCccccCCCEEEEEeCCCCEEEEEEeCCccccCChhHcccCCChhHEEEEeCCCCHHHHHhcCCCCCCEEEECCC
Confidence 1100 00 0000 0 00 0
Q ss_pred -------ceecCCch--HHHHHHHHHHHHHHhccCCCCceEEEEEEcCCCCc-chHHHHHHhCCCCCcceEEEEccCC
Q 023049 134 -------KMHACGHD--AHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEEGG-GGAKKMLDAGALENVEAIFGLHVSS 201 (288)
Q Consensus 134 -------~~~g~G~d--g~~a~~l~a~~~L~~~~~~~~g~v~~i~~~dEE~g-~Ga~~l~~~g~~~~~d~~i~~e~~~ 201 (288)
++.++.-| .++++++.+++.|++ ++.+|+++|++.||.| .||+..... + ++|.+|+.+.++
T Consensus 161 ~~~l~~~~i~~kalDnR~g~~~lle~l~~l~~----~~~~vy~v~TvQEEvGlrGA~~aa~~--i-~PDiaIavDvt~ 231 (356)
T PRK09864 161 FACWGEDKVVGKALDNRIGCAMMAELLQTVNN----PEITLYGVGSVEEEVGLRGAQTSAEH--I-KPDVVIVLDTAV 231 (356)
T ss_pred cEEEcCCEEEEEeCccHHHHHHHHHHHHHhhc----CCCeEEEEEEcchhcchHHHHHHHhc--C-CCCEEEEEeccc
Confidence 01122223 678888888888864 6789999999999999 788876553 3 579999998764
No 74
>KOG2194 consensus Aminopeptidases of the M20 family [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=98.21 E-value=7.9e-06 Score=82.82 Aligned_cols=134 Identities=19% Similarity=0.288 Sum_probs=93.6
Q ss_pred HHHHHHHhHhC-CCCC--C-ChHHHHHHHHHHHHhCC---------CCeEee---------------cCCceEEEEECCC
Q 023049 52 MVNIRRKIHEN-PELG--F-QEFETSKLIRAELDQMG---------IPYKFP---------------VAVTGVVGYIGTG 103 (288)
Q Consensus 52 li~~~~~L~~i-Ps~s--~-~E~~~~~~i~~~l~~~G---------~~~~~~---------------~~~~nvia~~~~~ 103 (288)
.+..+.+|.++ |.+. . +|..+.+++.+++.+.. +++... .+-.||+.++.++
T Consensus 59 A~~~l~~ls~~G~~~~gS~~ne~~a~~~il~e~~~i~~~~~~~~~~~Evd~q~~sg~~~~~~~~~~Y~~i~NIvVki~~k 138 (834)
T KOG2194|consen 59 ALKDLLSLSAAGPHPVGSDNNEMHASSFILKEVNKIRKGSQSDLYDMEVDLQSASGSFILEGMTLVYQNISNIVVKISPK 138 (834)
T ss_pred HHHHHHHHHhcCCcccCchhhHHHHHHHHHHHHHHHHhhhhcchhhheeceeeccceeeehhhhheeeeeeeEEEecCCC
Confidence 45556666666 4443 3 45678888888876432 222110 0135899999764
Q ss_pred --C-CcEEEEEeecccccCCCCCCCCccccCCCceecCCchH-HHHHHHHHHHHHHhccCCCCceEEEEEEcCCCCc-ch
Q 023049 104 --Q-PPFVALRADMDALAMEESVEWEHKSKVPGKMHACGHDA-HVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEEGG-GG 178 (288)
Q Consensus 104 --~-~~~i~l~aH~DtVP~~~~~~~pf~~~~~G~~~g~G~dg-~~a~~l~a~~~L~~~~~~~~g~v~~i~~~dEE~g-~G 178 (288)
+ +-.|++++|.|+||.+ +|-|+|| .+|.||.++|.+.+....++.+|+|+|.-.||.+ .|
T Consensus 139 ~~~~~~~lLlnaHfDSvpt~---------------~gAtDDg~~va~mLe~lRv~s~~~~~l~~~vVFLfNgaEE~~L~g 203 (834)
T KOG2194|consen 139 NGNDKNALLLNAHFDSVPTG---------------PGATDDGSGVASMLEALRVLSKSDKLLTHSVVFLFNGAEESGLLG 203 (834)
T ss_pred CCCccceeeeeccccccCCC---------------CCCCcchhHHHHHHHHHHHhhcCCCcccccEEEEecCcccchhhh
Confidence 2 3489999999999963 2445564 5789999999999988778999999999999998 68
Q ss_pred HHHHHHhC-CCCCcceEEEEccC
Q 023049 179 AKKMLDAG-ALENVEAIFGLHVS 200 (288)
Q Consensus 179 a~~l~~~g-~~~~~d~~i~~e~~ 200 (288)
+..++... +.+.+.++|.+|..
T Consensus 204 sH~FItQH~w~~~~ka~INLea~ 226 (834)
T KOG2194|consen 204 SHAFITQHPWSKNIKAVINLEAA 226 (834)
T ss_pred cccceecChhhhhhheEEecccc
Confidence 88888743 33356677776653
No 75
>PF04389 Peptidase_M28: Peptidase family M28; InterPro: IPR007484 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain is found in metallopeptidases belonging to the MEROPS peptidase family M28 (aminopeptidase Y, clan MH) []. They also contain a transferrin receptor-like dimerisation domain (IPR007365 from INTERPRO) and a protease-associated PA domain (IPR003137 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A 3BI1_A 2C6C_A ....
Probab=98.06 E-value=1.3e-05 Score=67.56 Aligned_cols=84 Identities=25% Similarity=0.433 Sum_probs=57.7
Q ss_pred EEEEEeecccccCCCCCCCCccccCCCceecCCch-HHHHHHHHHHHHHHhccCCCCceEEEEEEcCCCCc-chHHHHHH
Q 023049 107 FVALRADMDALAMEESVEWEHKSKVPGKMHACGHD-AHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEEGG-GGAKKMLD 184 (288)
Q Consensus 107 ~i~l~aH~DtVP~~~~~~~pf~~~~~G~~~g~G~d-g~~a~~l~a~~~L~~~~~~~~g~v~~i~~~dEE~g-~Ga~~l~~ 184 (288)
.|++.||+|+++ ..... ....|-..+ .+++++|..++.|++.+.+++.+|+|+|..+||.| .|++++++
T Consensus 2 ~ivi~aH~Ds~~-~~~~~--------~~~~GA~DnasGva~lLelAr~l~~~~~~~~~~i~fv~~~~EE~gl~GS~~~~~ 72 (179)
T PF04389_consen 2 YIVIGAHYDSVG-GDADG--------SWSPGANDNASGVAALLELARVLKELKPQPKRTIRFVFFDGEEQGLLGSRAFVE 72 (179)
T ss_dssp EEEEEEE--BES-CCC-T--------CSSS-TTTTHHHHHHHHHHHHHHHHSTHSSSEEEEEEEESSGGGTSHHHHHHHH
T ss_pred EEEEEeecCCCC-CcCCC--------cccCCcccchHHHHHHHHHHHHHHHhhcccCccEEEEEecccccCccchHHHHH
Confidence 589999999998 21111 011122223 57899999999999977778899999999999998 69999997
Q ss_pred hC--CCCCcceEEEEcc
Q 023049 185 AG--ALENVEAIFGLHV 199 (288)
Q Consensus 185 ~g--~~~~~d~~i~~e~ 199 (288)
.. ..+++.++|.++.
T Consensus 73 ~~~~~~~~~~~~inlD~ 89 (179)
T PF04389_consen 73 HDHEELDNIAAVINLDM 89 (179)
T ss_dssp HHHCHHHHEEEEEEECS
T ss_pred hhhcccccceeEEeccc
Confidence 31 1224556666654
No 76
>PF05343 Peptidase_M42: M42 glutamyl aminopeptidase; InterPro: IPR008007 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M42 (glutamyl aminopeptidase family, clan MH). For members of this family and family M28 the predicted metal ligands occur in the same order in the sequence: H, D, E, D/E, H; and the active site residues occur in the motifs HXD and EE. ; PDB: 2WYR_C 2CF4_A 1VHO_A 3ISX_A 3KL9_G 1YLO_F 3CPX_C 1VHE_A 2GRE_F 1XFO_A ....
Probab=97.79 E-value=0.00014 Score=66.60 Aligned_cols=60 Identities=27% Similarity=0.304 Sum_probs=46.0
Q ss_pred cCCch--HHHHHHHHHHHHHHhccCCCCceEEEEEEcCCCCc-chHHHHHHhCCCCCcceEEEEccCC
Q 023049 137 ACGHD--AHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEEGG-GGAKKMLDAGALENVEAIFGLHVSS 201 (288)
Q Consensus 137 g~G~d--g~~a~~l~a~~~L~~~~~~~~g~v~~i~~~dEE~g-~Ga~~l~~~g~~~~~d~~i~~e~~~ 201 (288)
|+..| .++++++.+++.|++. .+..+|+++|++.||.| .|++..... + ++|.+|+.+.++
T Consensus 130 gkalDdR~g~~~lle~l~~l~~~--~~~~~v~~v~tvqEEvG~rGA~~aa~~--i-~PD~ai~vD~~~ 192 (292)
T PF05343_consen 130 GKALDDRAGCAVLLELLRELKEK--ELDVDVYFVFTVQEEVGLRGAKTAAFR--I-KPDIAIAVDVTP 192 (292)
T ss_dssp ETTHHHHHHHHHHHHHHHHHTTS--S-SSEEEEEEESSCTTTSHHHHHHHHH--H--CSEEEEEEEEE
T ss_pred EEeCCchhHHHHHHHHHHHHhhc--CCCceEEEEEEeeeeecCcceeecccc--c-CCCEEEEEeeec
Confidence 44444 6788999999999875 35589999999999999 688887665 2 478888887753
No 77
>KOG3946 consensus Glutaminyl cyclase [Posttranslational modification, protein turnover, chaperones]
Probab=96.92 E-value=0.043 Score=49.54 Aligned_cols=137 Identities=15% Similarity=0.156 Sum_probs=87.5
Q ss_pred HHHHHhcCCCcHHHHHHHHHHhHhCCCCC--CChHHHHHHHHHHHHhCCCCeEeec----------CCceEEEEECCCCC
Q 023049 38 KFLDFAKKPEIFYWMVNIRRKIHENPELG--FQEFETSKLIRAELDQMGIPYKFPV----------AVTGVVGYIGTGQP 105 (288)
Q Consensus 38 ~i~~~~~~~~~~~~li~~~~~L~~iPs~s--~~E~~~~~~i~~~l~~~G~~~~~~~----------~~~nvia~~~~~~~ 105 (288)
.-+..+...-=..++.+.++-+. +|-.. ..-+++.+||.+.|+.+|+.++.+. .-.|+++++.....
T Consensus 39 ~~lr~i~~~s~~~~~~~~L~p~l-v~Rvpgs~g~~~vr~~i~~~l~~l~w~ve~~~f~~~tp~g~~~f~nii~tl~~~A~ 117 (338)
T KOG3946|consen 39 SRLRAINPDSDWNRLWENLLPIL-VPRVPGSPGSRQVRRFIIQHLRNLGWAVETDAFTDNTPLGTRNFNNLIATLDPNAS 117 (338)
T ss_pred HHHHHhcCCCCHHHHHHhhhhhh-ccccCCCCccHHHHHHHHHHHHhcCceeeeccccccCcceeeeeeeEEEecCCCcc
Confidence 34444443321123455544433 23333 3458899999999999999887631 12489999977655
Q ss_pred cEEEEEeecccccCCCCCCCCccccCCCceecCCchHHHHHHHHHHHHHHhccC----CCCceEEEEEEcCCCCc-----
Q 023049 106 PFVALRADMDALAMEESVEWEHKSKVPGKMHACGHDAHVAMLLGAAKMLQVFRH----EIKGTIVLVFQPAEEGG----- 176 (288)
Q Consensus 106 ~~i~l~aH~DtVP~~~~~~~pf~~~~~G~~~g~G~dg~~a~~l~a~~~L~~~~~----~~~g~v~~i~~~dEE~g----- 176 (288)
.-+++.+|+|+--...+ -| ..+-|.-..+||++..+++|.+.-. ...-.+.++|.-+||.-
T Consensus 118 r~lVlachydsk~~p~~---~~-------vgatdsAvpcamll~laq~l~~~~~~~~~~s~lsL~LvFFDGEEAf~eW~p 187 (338)
T KOG3946|consen 118 RYLVLACHYDSKIFPGG---MF-------VGATDSAVPCAMLLNLAQALDKILCSKVSASQLSLQLVFFDGEEAFEEWGP 187 (338)
T ss_pred hheeeecccccccCCCc---ce-------EeeccccccHHHHHHHHHHHHHHHhcccCcCceeEEEEEeccHHHHhhcCC
Confidence 78999999999732111 01 1122223578999998888765422 23457889999999963
Q ss_pred ----chHHHHHHh
Q 023049 177 ----GGAKKMLDA 185 (288)
Q Consensus 177 ----~Ga~~l~~~ 185 (288)
-|++++.+.
T Consensus 188 ~DSlYGsRhLA~~ 200 (338)
T KOG3946|consen 188 EDSLYGSRHLAAK 200 (338)
T ss_pred ccccchHHHHHHH
Confidence 289998774
No 78
>COG2234 Iap Predicted aminopeptidases [General function prediction only]
Probab=96.10 E-value=0.016 Score=55.65 Aligned_cols=43 Identities=33% Similarity=0.278 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHhccCCCCceEEEEEEcCCCCc-chHHHHHHhC
Q 023049 142 AHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEEGG-GGAKKMLDAG 186 (288)
Q Consensus 142 g~~a~~l~a~~~L~~~~~~~~g~v~~i~~~dEE~g-~Ga~~l~~~g 186 (288)
.++|++|..++.|++.. ++.+|.|++...||.| .|+.+++.+-
T Consensus 231 sGva~llEiAr~l~~~~--p~~~v~f~~~~aEE~Gl~GS~~~~~~~ 274 (435)
T COG2234 231 SGVAALLELARVLKGNP--PKRTVRFVAFGAEESGLLGSEAYVKRL 274 (435)
T ss_pred HHHHHHHHHHHHHhcCC--CCceEEEEEecchhhcccccHHHHhcC
Confidence 57899999999999864 8889999999999998 6999998864
No 79
>KOG2195 consensus Transferrin receptor and related proteins containing the protease-associated (PA) domain [Posttranslational modification, protein turnover, chaperones; Inorganic ion transport and metabolism; General function prediction only]
Probab=95.82 E-value=0.032 Score=56.84 Aligned_cols=76 Identities=22% Similarity=0.295 Sum_probs=56.7
Q ss_pred ceEEEEECCC--CCcEEEEEeecccccCCCCCCCCccccCCCceecCCchHHHHHHHHHHHH---HHhccCCCCceEEEE
Q 023049 94 TGVVGYIGTG--QPPFVALRADMDALAMEESVEWEHKSKVPGKMHACGHDAHVAMLLGAAKM---LQVFRHEIKGTIVLV 168 (288)
Q Consensus 94 ~nvia~~~~~--~~~~i~l~aH~DtVP~~~~~~~pf~~~~~G~~~g~G~dg~~a~~l~a~~~---L~~~~~~~~g~v~~i 168 (288)
.||++++.|. ++.-|++.+|-|..-.+- + ....++|.++..+++ +++.+.+|.++|+|+
T Consensus 339 ~NIig~I~Gs~epD~~ViigahrDSw~~Ga-------------~---dp~sGta~Ll~i~~~~~~~~k~gwrP~RtI~F~ 402 (702)
T KOG2195|consen 339 QNIIGKIEGSEEPDRYVIIGAHRDSWTFGA-------------I---DPNSGTALLLEIARALSKLKKRGWRPRRTILFA 402 (702)
T ss_pred eeEEEEEecCcCCCeEEEEeccccccccCC-------------c---CCCccHHHHHHHHHHHHHHHHcCCCccceEEEE
Confidence 5999999873 578899999999996431 1 111336666655554 456678999999999
Q ss_pred EEcCCCCc-chHHHHHHh
Q 023049 169 FQPAEEGG-GGAKKMLDA 185 (288)
Q Consensus 169 ~~~dEE~g-~Ga~~l~~~ 185 (288)
...+||.| -|+-.++++
T Consensus 403 sWdAeEfGliGStE~~E~ 420 (702)
T KOG2195|consen 403 SWDAEEFGLLGSTEWAEE 420 (702)
T ss_pred EccchhccccccHHHHHH
Confidence 99999999 588877764
No 80
>PF05450 Nicastrin: Nicastrin; InterPro: IPR008710 Nicastrin and presenilin are two major components of the gamma-secretase complex, which executes the intramembrane proteolysis of type I integral membrane proteins such as the amyloid precursor protein (APP) and Notch. Nicastrin is synthesised in fibroblasts and neurons as an endoglycosidase-H-sensitive glycosylated precursor protein (immature nicastrin) and is then modified by complex glycosylation in the Golgi apparatus and by sialylation in the trans-Golgi network (mature nicastrin) [].; GO: 0016485 protein processing, 0016021 integral to membrane
Probab=95.37 E-value=0.1 Score=46.39 Aligned_cols=66 Identities=21% Similarity=0.351 Sum_probs=49.8
Q ss_pred cEEEEEeecccccCCCCCCCCccccCCCceecCCch---HHHHHHHHHHHHHHhc---cCCCCceEEEEEEcCCCCc-ch
Q 023049 106 PFVALRADMDALAMEESVEWEHKSKVPGKMHACGHD---AHVAMLLGAAKMLQVF---RHEIKGTIVLVFQPAEEGG-GG 178 (288)
Q Consensus 106 ~~i~l~aH~DtVP~~~~~~~pf~~~~~G~~~g~G~d---g~~a~~l~a~~~L~~~---~~~~~g~v~~i~~~dEE~g-~G 178 (288)
|.|+..+.||+.-.-. +. +.|.| .+++++|+++++|.+. ...++++|.|.|..+|-.+ .|
T Consensus 1 ~iIlv~armDs~s~F~-----------~~--s~GA~s~~sglvaLLaaA~aL~~~~~~~~~~~knV~F~~F~GEs~dYiG 67 (234)
T PF05450_consen 1 PIILVVARMDSFSFFH-----------DL--SPGADSSVSGLVALLAAAEALSKLLPDSSNLNKNVLFAFFNGESFDYIG 67 (234)
T ss_pred CEEEEEecccchhccc-----------CC--CCCcccchHHHHHHHHHHHHHHHhhhccccccCcEEEEEecCccccccc
Confidence 6789999999985311 11 33443 5678899999999876 2356799999999999998 68
Q ss_pred HHHHHH
Q 023049 179 AKKMLD 184 (288)
Q Consensus 179 a~~l~~ 184 (288)
++.|+.
T Consensus 68 S~R~vy 73 (234)
T PF05450_consen 68 SSRFVY 73 (234)
T ss_pred hHHHHH
Confidence 888864
No 81
>KOG2526 consensus Predicted aminopeptidases - M20/M25/M40 family [Amino acid transport and metabolism]
Probab=92.90 E-value=1.9 Score=41.37 Aligned_cols=112 Identities=21% Similarity=0.293 Sum_probs=69.6
Q ss_pred HHHHHHHhCCCCeEeec---------CCceEEEEECCC--------CCcEEEEEeecccccCCCCCCCCccccCCCceec
Q 023049 75 LIRAELDQMGIPYKFPV---------AVTGVVGYIGTG--------QPPFVALRADMDALAMEESVEWEHKSKVPGKMHA 137 (288)
Q Consensus 75 ~i~~~l~~~G~~~~~~~---------~~~nvia~~~~~--------~~~~i~l~aH~DtVP~~~~~~~pf~~~~~G~~~g 137 (288)
.+..-+...|+...... --.|+.+++.++ .-|+|++.+|+||...-.+ +.
T Consensus 166 ~ll~Tasangy~iv~sg~sp~a~~s~ki~nI~G~L~~glra~~dg~~lPtIaivA~ydtfgaap~-------------ls 232 (555)
T KOG2526|consen 166 HLLQTASANGYSIVSSGQSPEAPPSYKILNIVGRLSSGLRAEGDGSALPTIAIVAHYDTFGAAPG-------------LS 232 (555)
T ss_pred HHHhhhccCcEEEEecCCCcccCCCCccceEEeecccccccccccccCCeEEEEEeccccccCCC-------------CC
Confidence 34444555666654311 135899998621 2399999999999864221 12
Q ss_pred CCch---HHHHHHHHHHHHHHhcc----CCCCceEEEEEEcCCCCc-chHHHHHHhC---CCCCcceEEEEcc
Q 023049 138 CGHD---AHVAMLLGAAKMLQVFR----HEIKGTIVLVFQPAEEGG-GGAKKMLDAG---ALENVEAIFGLHV 199 (288)
Q Consensus 138 ~G~d---g~~a~~l~a~~~L~~~~----~~~~g~v~~i~~~dEE~g-~Ga~~l~~~g---~~~~~d~~i~~e~ 199 (288)
.|.| .++.++|..++.+.+.. ...+.++.|+.+.+---. .|.+.-++.. +-+.+|++||++.
T Consensus 233 vgADSNGSGvvaLLelarlfSkly~ypsTrakYnLlF~lt~aG~lNyqGTkkWLe~dd~~lq~nVdfaiCLdt 305 (555)
T KOG2526|consen 233 VGADSNGSGVVALLELARLFSKLYDYPSTRAKYNLLFILTAAGKLNYQGTKKWLEFDDADLQKNVDFAICLDT 305 (555)
T ss_pred CCCCCCCccHHHHHHHHHHHHHHhcCcccccceeEEEEEccCccccccchhhhhhcchHHHHhcccEEEEhhh
Confidence 2332 24667888888877653 234678999988764433 4777666621 2236899999764
No 82
>cd00433 Peptidase_M17 Cytosol aminopeptidase family, N-terminal and catalytic domains. Family M17 contains zinc- and manganese-dependent exopeptidases ( EC 3.4.11.1), including leucine aminopeptidase. They catalyze removal of amino acids from the N-terminus of a protein and play a key role in protein degradation and in the metabolism of biologically active peptides. They do not contain HEXXH motif (which is used as one of the signature patterns to group the peptidase families) in the metal-binding site. The two associated zinc ions and the active site are entirely enclosed within the C-terminal catalytic domain in leucine aminopeptidase. The enzyme is a hexamer, with the catalytic domains clustered around the three-fold axis, and the two trimers related to one another by a two-fold rotation. The N-terminal domain is structurally similar to the ADP-ribose binding Macro domain. This family includes proteins from bacteria, archaea, animals and plants.
Probab=90.29 E-value=9.1 Score=37.54 Aligned_cols=120 Identities=17% Similarity=0.126 Sum_probs=75.1
Q ss_pred HHHHHHHHHhHhCCCCCCChHHHHHHHHHHHHhCCCCeEeec-------CCceEEEEECCC-CCcEEEEEeecccccCCC
Q 023049 50 YWMVNIRRKIHENPELGFQEFETSKLIRAELDQMGIPYKFPV-------AVTGVVGYIGTG-QPPFVALRADMDALAMEE 121 (288)
Q Consensus 50 ~~li~~~~~L~~iPs~s~~E~~~~~~i~~~l~~~G~~~~~~~-------~~~nvia~~~~~-~~~~i~l~aH~DtVP~~~ 121 (288)
-+-+.+.|+|++.|.--..-...++++++.+++.|++++..+ +.+.+++.-.+. ..|.++..-+-..=+
T Consensus 154 a~~~~~aRdL~n~P~n~~tP~~~a~~a~~l~~~~g~~v~V~~~~~l~~~gmg~~laVg~GS~~~p~lv~l~Y~g~~~--- 230 (468)
T cd00433 154 AEGVNLARDLVNTPANDLTPTYLAEEAKELAKELGVKVEVLDEKELEELGMGALLAVGKGSEEPPRLIVLEYKGKGA--- 230 (468)
T ss_pred HHHHHHHHHhhcCCcccCCHHHHHHHHHHHHHhcCCEEEEEcHHHHHhCCCCceeeecccCCCCCEEEEEEECCCCC---
Confidence 456889999999997655667789999999999999987632 233455543333 346666655543211
Q ss_pred CCCCCccccCCCce------------ecCCc--h-HHHHHHHHHHHHHHhccCCCCceEEEEEEcCCCC
Q 023049 122 SVEWEHKSKVPGKM------------HACGH--D-AHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEEG 175 (288)
Q Consensus 122 ~~~~pf~~~~~G~~------------~g~G~--d-g~~a~~l~a~~~L~~~~~~~~g~v~~i~~~dEE~ 175 (288)
...|..-..+|.- ...+| | ++.|+++++++++.+.+ ++-+|..+....|-.
T Consensus 231 -~~~~i~LVGKGiTFDsGG~slKp~~~M~~Mk~DM~GAAaVlga~~aia~l~--~~vnV~~i~~~~EN~ 296 (468)
T cd00433 231 -SKKPIALVGKGITFDTGGLSLKPAAGMDGMKYDMGGAAAVLGAMKAIAELK--LPVNVVGVLPLAENM 296 (468)
T ss_pred -CCCcEEEEcCceEecCCCccccCccChhhccccchhHHHHHHHHHHHHHcC--CCceEEEEEEeeecC
Confidence 1112111111110 11222 3 78899999999999875 566787777766653
No 83
>PRK00913 multifunctional aminopeptidase A; Provisional
Probab=89.74 E-value=7.9 Score=38.11 Aligned_cols=122 Identities=14% Similarity=0.118 Sum_probs=74.4
Q ss_pred HHHHHHHHHhHhCCCCCCChHHHHHHHHHHHHhCCCCeEeec-------CCceEEEEECCC-CCcEEEEEeeccc----c
Q 023049 50 YWMVNIRRKIHENPELGFQEFETSKLIRAELDQMGIPYKFPV-------AVTGVVGYIGTG-QPPFVALRADMDA----L 117 (288)
Q Consensus 50 ~~li~~~~~L~~iPs~s~~E~~~~~~i~~~l~~~G~~~~~~~-------~~~nvia~~~~~-~~~~i~l~aH~Dt----V 117 (288)
-+-+.+.|+|++.|.---.-...++++++.+++.|++++... +-+.+++.-.+. ..|.++..-+--. +
T Consensus 171 a~~~~~aRdL~n~P~n~~tP~~~a~~a~~~~~~~g~~v~V~~~~~l~~~gmg~~laVg~GS~~~prli~l~Y~g~~~~i~ 250 (483)
T PRK00913 171 AEGVNLARDLVNEPPNILTPAYLAERAKELAKEYGLEVEVLDEKEMEKLGMGALLAVGQGSANPPRLIVLEYKGGKKPIA 250 (483)
T ss_pred HHHHHHHHHhhCCChhhcCHHHHHHHHHHHHHhcCCEEEEEeHHHHHhCCCCcEEEEeccCCCCCeEEEEEECCCCCeEE
Confidence 456889999999997555566789999999999999987632 233455553333 3466665554311 0
Q ss_pred cCCCCCCCCcccc---C-C-Ccee-cCCchHHHHHHHHHHHHHHhccCCCCceEEEEEEcCCCC
Q 023049 118 AMEESVEWEHKSK---V-P-GKMH-ACGHDAHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEEG 175 (288)
Q Consensus 118 P~~~~~~~pf~~~---~-~-G~~~-g~G~dg~~a~~l~a~~~L~~~~~~~~g~v~~i~~~dEE~ 175 (288)
-+| +...|.+- . + ..|+ .+.+.++.|+.+++++++.+.+ ++-+|..+....|-.
T Consensus 251 LVG--KGITFDsGG~slKp~~~M~~MK~DM~GAAaVlga~~aia~lk--l~vnV~~v~~l~ENm 310 (483)
T PRK00913 251 LVG--KGLTFDSGGISLKPAAGMDEMKYDMGGAAAVLGTMRALAELK--LPVNVVGVVAACENM 310 (483)
T ss_pred EEc--CceEecCCCccCCCCcChhhcccccHhHHHHHHHHHHHHHcC--CCceEEEEEEeeccC
Confidence 111 11222211 0 1 1121 1222278899999999999864 567788777776653
No 84
>PTZ00412 leucyl aminopeptidase; Provisional
Probab=87.51 E-value=15 Score=36.73 Aligned_cols=119 Identities=14% Similarity=0.062 Sum_probs=70.9
Q ss_pred HHHHHHHHHhHhCCCCCCChHHHHHHHHHHHHhCCCCeE-eec-------CCceEEEEECCC-CCcEEEEEeecccccCC
Q 023049 50 YWMVNIRRKIHENPELGFQEFETSKLIRAELDQMGIPYK-FPV-------AVTGVVGYIGTG-QPPFVALRADMDALAME 120 (288)
Q Consensus 50 ~~li~~~~~L~~iPs~s~~E~~~~~~i~~~l~~~G~~~~-~~~-------~~~nvia~~~~~-~~~~i~l~aH~DtVP~~ 120 (288)
-+-+.+.|+|++.|.--..-...++.+.+.+.+.|++++ ... +.+.+++.-.+. ..|.++...+- |..
T Consensus 212 a~~vn~ARdLvn~P~N~ltP~~~Ae~a~~~~~~~g~~v~~Vl~~~~l~~~gmg~llaVgkGS~~pPrli~L~Y~---g~~ 288 (569)
T PTZ00412 212 GHCVNEARNLGNLREDEGVPQFYAEWIKKELAPLGIKVRKVLRGEQLEGAGLNLMYNVGKGSRHEPYLVVFEYI---GNP 288 (569)
T ss_pred HHHHHHHHHhccCChhhcCHHHHHHHHHHHHhhcCCEEEEEEcHHHHHHCCCcceeeeeccCCCCCEEEEEEeC---CCC
Confidence 446788999999987555556778888888888999985 421 233455554443 34666655542 211
Q ss_pred CCCCCCccccCCCce------------ecCCc--h-HHHHHHHHHHHHHHhccCCCCceEEEEEEcCCC
Q 023049 121 ESVEWEHKSKVPGKM------------HACGH--D-AHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEE 174 (288)
Q Consensus 121 ~~~~~pf~~~~~G~~------------~g~G~--d-g~~a~~l~a~~~L~~~~~~~~g~v~~i~~~dEE 174 (288)
+ ...|..-..+|.- ...+| | ++.|+++++++++.+.+ ++-+|..+....|-
T Consensus 289 ~-~~~~iaLVGKGITFDSGGisLKP~~~M~~MK~DMgGAAaVlga~~AiA~Lk--lpvnVv~iiplaEN 354 (569)
T PTZ00412 289 R-SSAATALVGKGVTFDCGGLNIKPYGSMETMHSDMMGAATVMCTLKAIAKLQ--LPVNVVAAVGLAEN 354 (569)
T ss_pred C-CCCcEEEEcCceEEcCCCCCCCCccChhhhhccchhHHHHHHHHHHHHHcC--CCeEEEEEEEhhhc
Confidence 1 1122221111111 11122 3 78889999999999864 55677776666665
No 85
>PRK05015 aminopeptidase B; Provisional
Probab=86.25 E-value=19 Score=34.74 Aligned_cols=119 Identities=12% Similarity=0.061 Sum_probs=68.1
Q ss_pred HHHHHHHHhHhCCCCCCChHHHHHHHHHHHHhC---CCCeEeec-------CCceEEEEECCC-CCcEEEEEeecccccC
Q 023049 51 WMVNIRRKIHENPELGFQEFETSKLIRAELDQM---GIPYKFPV-------AVTGVVGYIGTG-QPPFVALRADMDALAM 119 (288)
Q Consensus 51 ~li~~~~~L~~iPs~s~~E~~~~~~i~~~l~~~---G~~~~~~~-------~~~nvia~~~~~-~~~~i~l~aH~DtVP~ 119 (288)
+.+.+.|+|++.|.--..-...++...++++++ +++++... +...+++.=++. ..|.++-.-+ -|.
T Consensus 101 ~~~~~aRdLvn~P~n~ltP~~lA~~a~~~~~~~~~~~v~v~Vl~~~~L~~~gmggilaVgrGS~~pP~lv~L~Y---~~~ 177 (424)
T PRK05015 101 KIIDWVRDTINAPAEELGPEQLAQRAADLICSVAGDAVSYRIIKGEDLREQGYMGIHTVGRGSERPPVLLALDY---NPT 177 (424)
T ss_pred HHHHHHHHHhcCCcccCCHHHHHHHHHHHHHhhccCceEEEEeeHHHHHHCCCCceeeeeccCCCCCEEEEEEe---cCC
Confidence 368889999999975555566777777777776 57766531 223455543333 2355443332 232
Q ss_pred CCCCCCCc--cccCCCce------------ecCCc--h-HHHHHHHHHHHHHHhccCCCCceEEEEEEcCCCC
Q 023049 120 EESVEWEH--KSKVPGKM------------HACGH--D-AHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEEG 175 (288)
Q Consensus 120 ~~~~~~pf--~~~~~G~~------------~g~G~--d-g~~a~~l~a~~~L~~~~~~~~g~v~~i~~~dEE~ 175 (288)
++. ..|. .-..+|.- ...++ | ++.|+++++++++.+. .++.+|..+....|-.
T Consensus 178 g~~-~~~v~~aLVGKGITFDSGG~sLKps~~M~~MK~DMgGAAaV~ga~~~a~~~--~l~~nV~~il~~aENm 247 (424)
T PRK05015 178 GDP-DAPVYACLVGKGITFDSGGYSIKPSAGMDSMKSDMGGAATVTGALALAITR--GLNKRVKLFLCCAENL 247 (424)
T ss_pred CCC-CCCeeEEEecCceEecCCCccCCCCcCHHHhhcchhHHHHHHHHHHHHHhc--CCCceEEEEEEecccC
Confidence 221 1222 11111210 11222 3 6788889998888776 4667888888887754
No 86
>PF00883 Peptidase_M17: Cytosol aminopeptidase family, catalytic domain; InterPro: IPR000819 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M17 (leucyl aminopeptidase family, clan MF), the type example being leucyl aminopeptidase from Bos taurus (Bovine). Aminopeptidases are exopeptidases involved in the processing and regular turnover of intracellular proteins, although their precise role in cellular metabolism is unclear [, ]. Leucine aminopeptidases cleave leucine residues from the N-terminal of polypeptide chains, but substantial rates are evident for all amino acids []. The enzymes exist as homo-hexamers, comprising 2 trimers stacked on top of one another []. Each monomer binds 2 zinc ions and folds into 2 alpha/beta-type quasi-spherical globular domains, producing a comma-like shape []. The N-terminal 150 residues form a 5-stranded beta-sheet with 4 parallel and 1 anti-parallel strand sandwiched between 4 alpha-helices []. An alpha-helix extends into the C-terminal domain, which comprises a central 8-stranded saddle-shaped beta-sheet sandwiched between groups of helices, forming the monomer hydrophobic core []. A 3-stranded beta-sheet resides on the surface of the monomer, where it interacts with other members of the hexamer []. The 2 zinc ions and the active site are entirely located in the C-terminal catalytic domain [].; GO: 0004177 aminopeptidase activity, 0006508 proteolysis, 0005622 intracellular; PDB: 3KZW_L 3KQX_C 3KQZ_L 3KR4_I 3KR5_J 3T8W_C 3H8F_D 3H8G_A 3H8E_B 3IJ3_A ....
Probab=86.06 E-value=20 Score=33.20 Aligned_cols=110 Identities=18% Similarity=0.187 Sum_probs=65.4
Q ss_pred HHHHHHhHhCCCCCCChHHHHHHHHHHHHhCCCCeEeec-------C-------------Cce-EEEEECCC---CCcEE
Q 023049 53 VNIRRKIHENPELGFQEFETSKLIRAELDQMGIPYKFPV-------A-------------VTG-VVGYIGTG---QPPFV 108 (288)
Q Consensus 53 i~~~~~L~~iPs~s~~E~~~~~~i~~~l~~~G~~~~~~~-------~-------------~~n-via~~~~~---~~~~i 108 (288)
+.+.|+|.+.|.---.-...++++++.+++.|++++... + .+. ++.++.+. ..+.|
T Consensus 1 vn~aRdL~n~P~n~~~P~~~a~~~~~~~~~~~v~v~v~~~~~l~~~gmg~llaVg~gS~~~P~lv~l~Y~g~~~~~~~~i 80 (311)
T PF00883_consen 1 VNLARDLVNTPPNILTPETFAEYAKELAKKYGVKVEVLDEKELEKLGMGGLLAVGRGSRHPPRLVVLEYKGNGGKSKKPI 80 (311)
T ss_dssp HHHHHHHHHS-TTTSSHHHHHHHHHHHHHHCTEEEEEEEHHHHHHTT-HHHHHHHTTSSS--EEEEEEEETSTSTTSEEE
T ss_pred ChHHHhhhCCChhhcCHHHHHHHHHHHHhhcCCEEEEEeHHHHHHcCCccEeeecccCCCCCEEEEEEECCCCCCCCccE
Confidence 467899999998666777899999999999998886521 1 111 23333322 13445
Q ss_pred EEEeecccccCCCCCCCCcccc---C-C-Ccee-cCCchHHHHHHHHHHHHHHhccCCCCceEEEEEEcCCC
Q 023049 109 ALRADMDALAMEESVEWEHKSK---V-P-GKMH-ACGHDAHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEE 174 (288)
Q Consensus 109 ~l~aH~DtVP~~~~~~~pf~~~---~-~-G~~~-g~G~dg~~a~~l~a~~~L~~~~~~~~g~v~~i~~~dEE 174 (288)
+|.|= ...|.+- . + +.|+ .+.+.++.|+.+++++++.+.+ ++-+|..+....|-
T Consensus 81 ~LVGK----------GiTFDtGG~~lKp~~~M~~Mk~DM~GAAaV~ga~~aia~lk--~~vnV~~~l~~~EN 140 (311)
T PF00883_consen 81 ALVGK----------GITFDTGGLSLKPSGGMEGMKYDMGGAAAVLGAMRAIAKLK--LPVNVVAVLPLAEN 140 (311)
T ss_dssp EEEEE----------EEEEEE-TTSSSCSTTGGGGGGGGHHHHHHHHHHHHHHHCT---SSEEEEEEEEEEE
T ss_pred EEEcc----------eEEEecCCccCCCCcchhhcccCcchHHHHHHHHHHHHHcC--CCceEEEEEEcccc
Confidence 55442 1122110 0 0 1122 2222378899999999999865 45677777666654
No 87
>KOG2597 consensus Predicted aminopeptidase of the M17 family [General function prediction only]
Probab=77.69 E-value=29 Score=34.31 Aligned_cols=125 Identities=12% Similarity=0.092 Sum_probs=77.2
Q ss_pred HHHHHHHHHhHhCCCCCCChHHHHHHHHHHHHhCCCCeEeecC------Cce-EEEEECCC-CCcEEEEEeecccccCCC
Q 023049 50 YWMVNIRRKIHENPELGFQEFETSKLIRAELDQMGIPYKFPVA------VTG-VVGYIGTG-QPPFVALRADMDALAMEE 121 (288)
Q Consensus 50 ~~li~~~~~L~~iPs~s~~E~~~~~~i~~~l~~~G~~~~~~~~------~~n-via~~~~~-~~~~i~l~aH~DtVP~~~ 121 (288)
.+-+.+.|+|...|.---.-...++++.+++...|+.++.... .-| +++.-.+. ..|.++...|-.+=|...
T Consensus 189 ~~~~~lar~l~d~PaN~Mtp~~fae~a~~~~~~~~v~v~V~~~~~i~~~~~~~~l~V~k~s~~pP~ll~lsY~g~~~~~~ 268 (513)
T KOG2597|consen 189 AAAQNLARRLGDTPANRMTPTQFAEEAVDVLCPLGVTVEVRDEEWIEEQGMNSFLAVAKASCEPPRLLELSYKGTSGADK 268 (513)
T ss_pred HHHHHHHHHhccCChhhcCHHHHHHHHHHhhcccCceEEEechHHHhhccccceeeeccccCCCCEEEEEEEcCCCCCcc
Confidence 4457788888888865445567899999999999988765321 223 34433333 357888888876654322
Q ss_pred C-----CCCCcccc---CC--Cce-ecCCchHHHHHHHHHHHHHHhccCCCCceEEEEEEcCCCCc
Q 023049 122 S-----VEWEHKSK---VP--GKM-HACGHDAHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEEGG 176 (288)
Q Consensus 122 ~-----~~~pf~~~---~~--G~~-~g~G~dg~~a~~l~a~~~L~~~~~~~~g~v~~i~~~dEE~g 176 (288)
. +...|.+- ++ +.| ..|+..++.|+++++++++.+.+ ++-++.+++.-.|-.-
T Consensus 269 ~i~lvGKGvtfDsGGl~iK~~~~M~~mr~dm~GAA~v~~~~~a~~~l~--~~in~~~v~plcENm~ 332 (513)
T KOG2597|consen 269 TILLVGKGVTFDSGGLSIKPKTGMDGMRRDMGGAAVVLGAFRAAAQLS--LPINVHAVLPLCENMP 332 (513)
T ss_pred eEEEEecceEEecCccccccCCChhhhhhhccccHHHHHHHHHHHhcC--CCCceEEEEeeeccCC
Confidence 1 12223221 11 112 12333367889999999999875 4467777777776643
No 88
>COG0260 PepB Leucyl aminopeptidase [Amino acid transport and metabolism]
Probab=69.85 E-value=1.2e+02 Score=30.04 Aligned_cols=123 Identities=15% Similarity=0.138 Sum_probs=65.9
Q ss_pred HHHHHHHHHhHhCCCCCCChHHHHHHHHHHHHhCC-CCeEeec-------CCceEEEEECCC-CCcEEEEE---eecc-c
Q 023049 50 YWMVNIRRKIHENPELGFQEFETSKLIRAELDQMG-IPYKFPV-------AVTGVVGYIGTG-QPPFVALR---ADMD-A 116 (288)
Q Consensus 50 ~~li~~~~~L~~iPs~s~~E~~~~~~i~~~l~~~G-~~~~~~~-------~~~nvia~~~~~-~~~~i~l~---aH~D-t 116 (288)
-+-+.+.|+|++.|.---.-...++. .+.|.+.+ ++++..+ +.+.+++.-.+. ..|.++.. ++=+ -
T Consensus 167 ~~~v~~aRdLvN~P~n~l~P~~la~~-a~~la~~~~v~veVl~~~~l~~~gmg~llaVg~GS~~~Prlivl~y~g~~~~~ 245 (485)
T COG0260 167 AEGVNLARDLVNTPANILTPEELAER-AELLAKLGGVKVEVLDEKDLEKLGMGALLAVGKGSARPPRLIVLEYNGKGKAK 245 (485)
T ss_pred HHHHHHHHHHhhCCcccCCHHHHHHH-HHHHhhcCCceEEEecHHHHHHcCCceeeeeccCCCCCCeEEEEEcCCCCCCC
Confidence 34688999999999754455566666 66676655 7776532 233455543332 23554432 2221 1
Q ss_pred ccCC-CCCCCCcccc---CCCceecCCc--h-HHHHHHHHHHHHHHhccCCCCceEEEEEEcCCCC
Q 023049 117 LAME-ESVEWEHKSK---VPGKMHACGH--D-AHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEEG 175 (288)
Q Consensus 117 VP~~-~~~~~pf~~~---~~G~~~g~G~--d-g~~a~~l~a~~~L~~~~~~~~g~v~~i~~~dEE~ 175 (288)
.|.. =.....|.+- ++-.-+...| | |+.|+.++++.++.+.+ ++-+|..+....|-.
T Consensus 246 ~~iaLVGKGitFDsGGisiKp~~~M~~MK~DMgGAAaV~g~~~a~a~l~--l~vnv~~vl~~~ENm 309 (485)
T COG0260 246 KPIALVGKGITFDSGGISIKPAAGMDTMKYDMGGAAAVLGAMRALAELK--LPVNVVGVLPAVENM 309 (485)
T ss_pred ceEEEEcCceeecCCCcccCCccchhhhhcccchHHHHHHHHHHHHHcC--CCceEEEEEeeeccC
Confidence 1110 0011223221 0000112222 3 77899999999999874 556777776666653
No 89
>COG4882 Predicted aminopeptidase, Iap family [General function prediction only]
Probab=67.55 E-value=21 Score=33.78 Aligned_cols=71 Identities=24% Similarity=0.175 Sum_probs=43.0
Q ss_pred ceEEEEECCCCCcEEEEEeecccccCCCCCCCCccccCCCceecCCchHHHHHHHHHHHHHHhccCCCCceEEEEEEcCC
Q 023049 94 TGVVGYIGTGQPPFVALRADMDALAMEESVEWEHKSKVPGKMHACGHDAHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAE 173 (288)
Q Consensus 94 ~nvia~~~~~~~~~i~l~aH~DtVP~~~~~~~pf~~~~~G~~~g~G~dg~~a~~l~a~~~L~~~~~~~~g~v~~i~~~dE 173 (288)
.|+|+.-++ .+..+++.+|.|+-..+..++ | .+++..+.++..|+..+. ..-++....|
T Consensus 179 y~~Ia~~~~-en~vv~i~AH~DHW~~G~tDN-------------~---lg~~~AV~~~~~lr~~~~----~~~lv~FtAE 237 (486)
T COG4882 179 YNVIAVDGG-ENGVVLIGAHLDHWYTGFTDN-------------I---LGVAQAVETAGRLRGRGL----AAGLVVFTAE 237 (486)
T ss_pred EEEEEecCC-CCCceEEeechhhhhhcccch-------------h---hhHHHHHHHHHHHhhcCc----ceeEEEEecc
Confidence 477766443 357899999999987542110 0 346666666777765432 2334444456
Q ss_pred CCcc----------hHHHHHHh
Q 023049 174 EGGG----------GAKKMLDA 185 (288)
Q Consensus 174 E~g~----------Ga~~l~~~ 185 (288)
|.|+ |++.++++
T Consensus 238 E~g~p~~~sfyWa~GSr~~lk~ 259 (486)
T COG4882 238 EHGMPGMASFYWAAGSRGLLKE 259 (486)
T ss_pred ccCCCCCcceeecccchHHHhh
Confidence 6552 88888875
No 90
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=50.01 E-value=21 Score=28.07 Aligned_cols=52 Identities=12% Similarity=0.148 Sum_probs=43.2
Q ss_pred cchhhHHHHHhcCCCcHHHHHHHHHHhHhCCCCCCChHHHHHHHHHHHHhCCCCe
Q 023049 33 TQIPVKFLDFAKKPEIFYWMVNIRRKIHENPELGFQEFETSKLIRAELDQMGIPY 87 (288)
Q Consensus 33 ~~~~~~i~~~~~~~~~~~~li~~~~~L~~iPs~s~~E~~~~~~i~~~l~~~G~~~ 87 (288)
+++...++++++.+++.++.+++...|.+.-+++.+ .|+.|+..|.+.|+..
T Consensus 61 sGy~PtViD~lrRC~T~EEALEVInylek~GEIt~e---~A~eLr~~L~~kGvr~ 112 (128)
T PF09868_consen 61 SGYNPTVIDYLRRCKTDEEALEVINYLEKRGEITPE---EAKELRSILVKKGVRS 112 (128)
T ss_pred cCCCChHHHHHHHhCcHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHhhHHH
Confidence 456668999999999889999999999999888754 5688999998888753
No 91
>KOG3566 consensus Glycosylphosphatidylinositol anchor attachment protein GAA1 [Posttranslational modification, protein turnover, chaperones]
Probab=38.09 E-value=1.9e+02 Score=29.28 Aligned_cols=90 Identities=20% Similarity=0.305 Sum_probs=57.3
Q ss_pred HHHHHHHHHhCCCCeEeec---------CCceEEEEECC--CC-CcEEEEEeecccccCCCCCCCCccccCCCceecCCc
Q 023049 73 SKLIRAELDQMGIPYKFPV---------AVTGVVGYIGT--GQ-PPFVALRADMDALAMEESVEWEHKSKVPGKMHACGH 140 (288)
Q Consensus 73 ~~~i~~~l~~~G~~~~~~~---------~~~nvia~~~~--~~-~~~i~l~aH~DtVP~~~~~~~pf~~~~~G~~~g~G~ 140 (288)
-.+...++++.|.+++... .+.||++.+.. ++ ...++|. ||.+..+ | +.
T Consensus 91 ~~~~~~~~q~FGl~t~~~n~~~~P~e~y~G~NvyGilRAPRgdgtEsivl~-----vP~~~~~---------~-----~~ 151 (617)
T KOG3566|consen 91 NAWAEVSMQEFGLETHTQNYSNGPFEEYSGENVYGILRAPRGDGTESIVLV-----VPYGRSS---------G-----SN 151 (617)
T ss_pred hhHHHHHHHHhCccccccCccCCchhhcCCceEEEEEecCCCCCcceEEEE-----EecccCC---------C-----cc
Confidence 3457778888899876521 25799999854 23 3667774 6653211 1 12
Q ss_pred hHHHHHHHHHHHHHHhccCCCCceEEEEEEcCCCCcchHHHHHH
Q 023049 141 DAHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEEGGGGAKKMLD 184 (288)
Q Consensus 141 dg~~a~~l~a~~~L~~~~~~~~g~v~~i~~~dEE~g~Ga~~l~~ 184 (288)
+..++.+++-++++++. .-...+|+++|+-++= .|..+.++
T Consensus 152 ~~~v~l~lsla~~f~r~-~yWsKDII~v~~d~~~--~g~~AwLe 192 (617)
T KOG3566|consen 152 SASVALLLSLADYFSRW-VYWSKDIIFVFTDGPA--LGLDAWLE 192 (617)
T ss_pred hhHHHHHHHHHHHhcCC-eeecccEEEEEeCCcc--ccHHHHHH
Confidence 45677788888888864 3467899999996643 34444444
No 92
>COG0065 LeuC 3-isopropylmalate dehydratase large subunit [Amino acid transport and metabolism]
Probab=37.32 E-value=3.9e+02 Score=25.79 Aligned_cols=97 Identities=18% Similarity=0.307 Sum_probs=52.6
Q ss_pred hHHHHHHHHHHHHHHhccCCCCceEEEEEEcCCCCc------ch-HHHHHHhCCC---CCcceEEEEccCCCCCcceEEe
Q 023049 141 DAHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEEGG------GG-AKKMLDAGAL---ENVEAIFGLHVSSLFPVGTVAS 210 (288)
Q Consensus 141 dg~~a~~l~a~~~L~~~~~~~~g~v~~i~~~dEE~g------~G-a~~l~~~g~~---~~~d~~i~~e~~~~~~~g~v~~ 210 (288)
+|-+-=+=.|++.|+ +.+.+.+|+.+..|+-..- .| .+-+++.|.. ..+..|+.+|++- +..|+++.
T Consensus 305 NgRieDLr~AA~Ilk--grkva~~Vr~iVvP~S~~V~~qA~~eGl~~if~~AG~~~~~pgCg~CLg~~~gv-L~~gE~c~ 381 (423)
T COG0065 305 NGRIEDLRAAAEILK--GRKVAPGVRAIVVPGSRRVKEQAEKEGLDKIFIEAGFEWREPGCGPCLGMHPGV-LGPGERCA 381 (423)
T ss_pred CccHHHHHHHHHHhc--cCccCCCceEEEecCcHHHHHHHHHccHHHHHHhcCcEEcCCCCccccccCCCc-CCCCCEEe
Confidence 343444455778887 5567778999998853211 02 1223333321 1345566676643 22354443
Q ss_pred eccccccceeEEEEEEEeccccCC-CCCCCCcHHHHHHHHH
Q 023049 211 RPGPTLAAGGFFEAVINGKGGHAA-IPQHTIDPIVAASNVI 250 (288)
Q Consensus 211 ~~g~~~~G~~~~~i~v~G~~aHas-~P~~g~NAI~~~~~~i 250 (288)
... .=.+.||.+|.. +-++ .||..+++..|
T Consensus 382 STS---------NRNF~GRqG~~~a~~~L-~SPA~AAAaAv 412 (423)
T COG0065 382 STS---------NRNFEGRQGSPGARTYL-ASPAMAAAAAV 412 (423)
T ss_pred ecc---------CCCCCccCCCCCCeEEe-cCHHHHHHHHh
Confidence 211 235789999765 4544 56666666555
No 93
>PF06675 DUF1177: Protein of unknown function (DUF1177); InterPro: IPR009561 This family consists of several hypothetical archaeal and bacterial proteins of around 300 residues in length. The function of this family is unknown.
Probab=35.29 E-value=1.2e+02 Score=27.21 Aligned_cols=89 Identities=17% Similarity=0.278 Sum_probs=54.7
Q ss_pred CCCcEEEEEeecccccCCCCCCCCccccCCCceecCCchHHHHHHHHHHHHH--HhccCCCCceEEEEEE--cCCCCc--
Q 023049 103 GQPPFVALRADMDALAMEESVEWEHKSKVPGKMHACGHDAHVAMLLGAAKML--QVFRHEIKGTIVLVFQ--PAEEGG-- 176 (288)
Q Consensus 103 ~~~~~i~l~aH~DtVP~~~~~~~pf~~~~~G~~~g~G~dg~~a~~l~a~~~L--~~~~~~~~g~v~~i~~--~dEE~g-- 176 (288)
++.|++.+.|-+=.+-... ...| .-.+.||.++++..|+|.+ ++.|..+.|+|.+.-- |+=-+-
T Consensus 29 g~aptlGIiGRLGgigARP--------~~iG--lVSDaDGAi~ala~a~KL~~M~~kGd~L~GDVii~ThIcp~Apt~PH 98 (276)
T PF06675_consen 29 GSAPTLGIIGRLGGIGARP--------ERIG--LVSDADGAIAALAAALKLLDMQAKGDVLPGDVIITTHICPDAPTRPH 98 (276)
T ss_pred CCCCeeEEEeecccccccc--------ccee--eeecCchHHHHHHHHHHHHHHHHcCCccCCcEEEEEecCCCCCCCCC
Confidence 3458999988777665321 1112 1223467777777777764 4668889999988743 332221
Q ss_pred ---------chHHHHHHhCCCCCcceEEEEccCC
Q 023049 177 ---------GGAKKMLDAGALENVEAIFGLHVSS 201 (288)
Q Consensus 177 ---------~Ga~~l~~~g~~~~~d~~i~~e~~~ 201 (288)
-+...|.+...-...|+++..+.+-
T Consensus 99 ~PvpFM~sPv~~~~~n~~EV~p~mdAILSiDTTK 132 (276)
T PF06675_consen 99 DPVPFMGSPVDMATMNRHEVDPEMDAILSIDTTK 132 (276)
T ss_pred CCcccccCccCHHHHHHhhcCcccceEEEEecCC
Confidence 1566666665555678888877653
No 94
>PF04114 Gaa1: Gaa1-like, GPI transamidase component ; InterPro: IPR007246 GPI (glycosyl phosphatidyl inositol) transamidase is a multiprotein complex required for a terminal step of adding the glycosylphosphatidylinositol (GPI) anchor attachment onto proteins. Gpi16, Gpi8 and Gaa1 form a sub-complex of the GPI transamidase.; GO: 0016021 integral to membrane, 0042765 GPI-anchor transamidase complex
Probab=29.47 E-value=1.7e+02 Score=29.12 Aligned_cols=71 Identities=21% Similarity=0.279 Sum_probs=46.4
Q ss_pred CceEEEEECC--CC-CcEEEEEeecccccCCCCCCCCccccCCCceecCCchHHHHHHHHHHHHHHhccCCCCceEEEEE
Q 023049 93 VTGVVGYIGT--GQ-PPFVALRADMDALAMEESVEWEHKSKVPGKMHACGHDAHVAMLLGAAKMLQVFRHEIKGTIVLVF 169 (288)
Q Consensus 93 ~~nvia~~~~--~~-~~~i~l~aH~DtVP~~~~~~~pf~~~~~G~~~g~G~dg~~a~~l~a~~~L~~~~~~~~g~v~~i~ 169 (288)
+.|++|.+.. ++ ...+++..-.++.. +. -..++++.+++.++++++.. -..+||+|++
T Consensus 3 G~nvy~i~rapR~d~tEaivl~~~~~~~~--------------~~----~n~~~v~l~lal~~~~~~~~-~wsKDii~l~ 63 (504)
T PF04114_consen 3 GTNVYGILRAPRGDGTEAIVLVVPWRDSD--------------GE----YNAGGVALALALARYFRRQS-YWSKDIIFLF 63 (504)
T ss_pred ceEEEEEEecCCCCCceeEEEEEecCCCC--------------cc----cchhhHHHHHHHHHHhhhch-hhhccEEEEe
Confidence 5799998853 22 36788764333221 10 01245888899999999764 4688999999
Q ss_pred EcCCCCcchHHHHHH
Q 023049 170 QPAEEGGGGAKKMLD 184 (288)
Q Consensus 170 ~~dEE~g~Ga~~l~~ 184 (288)
+.+|. .|.+..++
T Consensus 64 ~~~~~--~g~~awl~ 76 (504)
T PF04114_consen 64 TDDEL--AGMQAWLE 76 (504)
T ss_pred cCCcc--hHHHHHHH
Confidence 87654 36666665
No 95
>PF09940 DUF2172: Domain of unknown function (DUF2172); InterPro: IPR012353 The proteins in this entry are encoded by genes located in polysaccharide biosynthesis gene clusters, and are therefore believed to be involved in polysaccharide biosynthesis. The ste gene cluster (for Streptomyces eps) is involved in exopolysaccharide EPS 139A biosynthesis in Streptomyces sp. 139 []. Members of this group exhibit distant sequence similarity to aminopeptidases (IPR007484 from INTERPRO, MEROPS peptidase family M28).; PDB: 3K9T_A.
Probab=28.50 E-value=1.9e+02 Score=27.57 Aligned_cols=62 Identities=24% Similarity=0.208 Sum_probs=35.2
Q ss_pred ECCCCCcEEEEEeecccccCCCCCCCCccccCCCceecCCch--HHHHHHHHHHHHHHhccCCCCceEEEEEEcCCCCcc
Q 023049 100 IGTGQPPFVALRADMDALAMEESVEWEHKSKVPGKMHACGHD--AHVAMLLGAAKMLQVFRHEIKGTIVLVFQPAEEGGG 177 (288)
Q Consensus 100 ~~~~~~~~i~l~aH~DtVP~~~~~~~pf~~~~~G~~~g~G~d--g~~a~~l~a~~~L~~~~~~~~g~v~~i~~~dEE~g~ 177 (288)
++|.....|+|.+|+.+=.. ..| .+.+.+...++.|++.. ...+.+|+|.| |+ -
T Consensus 124 ipG~s~~EillsthiCHPsm-------------------ANdnLSG~~v~~~La~~L~~~~--~rytYRflf~P--eT-I 179 (386)
T PF09940_consen 124 IPGESDEEILLSTHICHPSM-------------------ANDNLSGPAVLTFLAKWLKQLP--NRYTYRFLFVP--ET-I 179 (386)
T ss_dssp E--SSS-EEEEEEE----S--------------------TTTTHHHHHHHHHHHHHHTTS----SSEEEEEEE---TT-H
T ss_pred ecCCCCCeEEEEEeccCccc-------------------ccccccHHHHHHHHHHHHhcCC--cCceEEEEEcc--cc-H
Confidence 46666689999999876321 122 45677777788888764 34899999999 33 3
Q ss_pred hHHHHHHh
Q 023049 178 GAKKMLDA 185 (288)
Q Consensus 178 Ga~~l~~~ 185 (288)
|+...+.+
T Consensus 180 GsI~yLsk 187 (386)
T PF09940_consen 180 GSITYLSK 187 (386)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555543
No 96
>PRK02256 putative aminopeptidase 1; Provisional
Probab=25.09 E-value=1.1e+02 Score=29.93 Aligned_cols=19 Identities=26% Similarity=0.170 Sum_probs=15.6
Q ss_pred ChHHHHHHHHHHHHhCCCC
Q 023049 68 QEFETSKLIRAELDQMGIP 86 (288)
Q Consensus 68 ~E~~~~~~i~~~l~~~G~~ 86 (288)
.++.+++++++.|++.||.
T Consensus 40 tp~Hav~~~~~~L~~~GF~ 58 (462)
T PRK02256 40 TEREAVKEIIELAEEKGFI 58 (462)
T ss_pred CHHHHHHHHHHHHHHcCCe
Confidence 3578888899999988886
No 97
>PF13974 YebO: YebO-like protein
Probab=24.30 E-value=92 Score=22.85 Aligned_cols=45 Identities=13% Similarity=0.271 Sum_probs=31.4
Q ss_pred HHHHHHHHhhcCCcccCCCCCcccccchhhHHHHHhcCCCcHHHHHHHHHHhHhCCC
Q 023049 8 SLLVTLYLLAPTSISSDVSLSPEELTQIPVKFLDFAKKPEIFYWMVNIRRKIHENPE 64 (288)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~li~~~~~L~~iPs 64 (288)
+.++.++|..+.|.+++ . --++++.+-+++ +.-.++++.|.....
T Consensus 10 v~livWFFVnRaSvRAN---------E-QI~LL~~ileqQ--KrQn~LL~rL~~~~~ 54 (80)
T PF13974_consen 10 VGLIVWFFVNRASVRAN---------E-QIELLEEILEQQ--KRQNALLRRLCEANE 54 (80)
T ss_pred HHHHHHHHHHHHHHhHH---------H-HHHHHHHHHHHH--HHHHHHHHHHhcccc
Confidence 55666899999888874 1 123566665555 677888999988765
No 98
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=24.17 E-value=54 Score=27.51 Aligned_cols=32 Identities=16% Similarity=0.119 Sum_probs=26.0
Q ss_pred hHhCCCCCCChHHHHHHHHHHHHhCCCCeEee
Q 023049 59 IHENPELGFQEFETSKLIRAELDQMGIPYKFP 90 (288)
Q Consensus 59 L~~iPs~s~~E~~~~~~i~~~l~~~G~~~~~~ 90 (288)
|+-.-+-.|+-++++++|...|++.|++++..
T Consensus 4 LIlYstr~GqT~kIA~~iA~~L~e~g~qvdi~ 35 (175)
T COG4635 4 LILYSTRDGQTRKIAEYIASHLRESGIQVDIQ 35 (175)
T ss_pred EEEEecCCCcHHHHHHHHHHHhhhcCCeeeee
Confidence 34444556888999999999999999998764
No 99
>PF03682 UPF0158: Uncharacterised protein family (UPF0158); InterPro: IPR005361 This is a small family of hypothetical bacterial proteins of unknown function.
Probab=23.72 E-value=79 Score=26.34 Aligned_cols=52 Identities=21% Similarity=0.233 Sum_probs=34.1
Q ss_pred hhhHHHHHhcCCCcHHHHHHHHHHhHhCCCC-----CCChHHHHHHHHHHHHhCCCCeEe
Q 023049 35 IPVKFLDFAKKPEIFYWMVNIRRKIHENPEL-----GFQEFETSKLIRAELDQMGIPYKF 89 (288)
Q Consensus 35 ~~~~i~~~~~~~~~~~~li~~~~~L~~iPs~-----s~~E~~~~~~i~~~l~~~G~~~~~ 89 (288)
+..++.+.++.. ...-++-..|...|+. .+++....+++.+||++.|+++..
T Consensus 87 l~~~L~~ai~gr---gafrrFKd~L~~~~~~~e~Wy~F~~~~~r~~a~eWleen~I~~~~ 143 (163)
T PF03682_consen 87 LRERLLRAIQGR---GAFRRFKDILSEYPELRERWYAFREERLRERAIEWLEENGIEPVF 143 (163)
T ss_pred HHHHHHHHHhCC---cHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccc
Confidence 444555555543 2333444446666664 456778899999999999999754
No 100
>PTZ00371 aspartyl aminopeptidase; Provisional
Probab=21.90 E-value=4.4e+02 Score=25.85 Aligned_cols=50 Identities=16% Similarity=0.228 Sum_probs=33.0
Q ss_pred ChHHHHHHHHHHHHhCCCCeEe-------ec--------CCceEEEEE-CCCC----CcEEEEEeecccc
Q 023049 68 QEFETSKLIRAELDQMGIPYKF-------PV--------AVTGVVGYI-GTGQ----PPFVALRADMDAL 117 (288)
Q Consensus 68 ~E~~~~~~i~~~l~~~G~~~~~-------~~--------~~~nvia~~-~~~~----~~~i~l~aH~DtV 117 (288)
.++.+++++.+.|++.||..-. .. ....++|.. +... ....+..+|.|.=
T Consensus 21 t~~hav~~~~~~L~~~GF~~l~e~~~w~l~~g~kyyv~r~~ssl~Af~vg~~~~~~~~g~~ivgaHtDsP 90 (465)
T PTZ00371 21 SPFHAVQELKERLKKSGFKQLNEGENWKLEKGGKYYLTRNNSTIVAFTVGKKFDAPNGGFKIVGAHTDSP 90 (465)
T ss_pred CHHHHHHHHHHHHHHCcCEEccccccCccCCCCEEEEEcCCcEEEEEEeCCCCccCCCCeEEEEEeccCC
Confidence 4688999999999999996411 01 123566654 4331 2356889999974
No 101
>PRK02256 putative aminopeptidase 1; Provisional
Probab=21.07 E-value=5e+02 Score=25.48 Aligned_cols=17 Identities=29% Similarity=0.311 Sum_probs=13.4
Q ss_pred CCCceEEEEEEcCCCCc
Q 023049 160 EIKGTIVLVFQPAEEGG 176 (288)
Q Consensus 160 ~~~g~v~~i~~~dEE~g 176 (288)
.+...++++++..||.|
T Consensus 277 ~~~~~~~~~~~dqEEVG 293 (462)
T PRK02256 277 NPEKTAVVLLVDKEEIG 293 (462)
T ss_pred cCCCeEEEEEEcccccC
Confidence 35567888888999988
No 102
>PRK05066 arginine repressor; Provisional
Probab=21.00 E-value=1.2e+02 Score=25.08 Aligned_cols=35 Identities=17% Similarity=0.177 Sum_probs=27.4
Q ss_pred HHHHHHHHHhHhCCCCCCChHHHHHHHHHHHHhCCCC-eEe
Q 023049 50 YWMVNIRRKIHENPELGFQEFETSKLIRAELDQMGIP-YKF 89 (288)
Q Consensus 50 ~~li~~~~~L~~iPs~s~~E~~~~~~i~~~l~~~G~~-~~~ 89 (288)
.+..+..++|++.-+.+-+|. |.+.|++.|++ +++
T Consensus 8 ~~r~~~I~~iI~~~~I~tQee-----L~~~L~~~Gi~~vTQ 43 (156)
T PRK05066 8 EELVKAFKALLKEEKFGSQGE-----IVTALQEQGFDNINQ 43 (156)
T ss_pred HHHHHHHHHHHhhCCCCCHHH-----HHHHHHHCCCCeecH
Confidence 557788888888877766554 88899999999 765
No 103
>PRK02813 putative aminopeptidase 2; Provisional
Probab=20.88 E-value=4.2e+02 Score=25.70 Aligned_cols=65 Identities=11% Similarity=0.111 Sum_probs=0.0
Q ss_pred HHHHHHHHhHhCCCCCCChHHHHHHHHHHHHhCCC---------------CeEeecCCceEEEEECCCC----CcEEEEE
Q 023049 51 WMVNIRRKIHENPELGFQEFETSKLIRAELDQMGI---------------PYKFPVAVTGVVGYIGTGQ----PPFVALR 111 (288)
Q Consensus 51 ~li~~~~~L~~iPs~s~~E~~~~~~i~~~l~~~G~---------------~~~~~~~~~nvia~~~~~~----~~~i~l~ 111 (288)
...++.+++...=.-+..++.+++++++.|++.|| .+.....+..++|..-|+. ....++.
T Consensus 3 ~~~~~~~~~~~fl~~s~t~~hav~~~~~~L~~~Gf~~l~e~~~w~l~~g~kyy~~r~~~sliAf~vg~~~~~~~g~~iv~ 82 (428)
T PRK02813 3 DARAFAQDLLDFIDASPSPFHAVANVAQRLEAAGFTELDETDAWKLEPGGRYYVVRNGSSLIAFRVGEGAPAETGFRIVG 82 (428)
T ss_pred cHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCeeccccccCccCCCCEEEEEcCCcEEEEEEeCCCCccCCCeEEEE
Q ss_pred eecc
Q 023049 112 ADMD 115 (288)
Q Consensus 112 aH~D 115 (288)
+|+|
T Consensus 83 aH~D 86 (428)
T PRK02813 83 AHTD 86 (428)
T ss_pred Eecc
Done!