Query 023050
Match_columns 288
No_of_seqs 217 out of 1164
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 08:05:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023050.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023050hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00052 prolyl 4-hydroxylase; 100.0 1.8E-59 3.9E-64 435.6 24.7 216 71-287 41-256 (310)
2 KOG1591 Prolyl 4-hydroxylase a 100.0 7E-52 1.5E-56 380.6 18.0 263 8-287 10-288 (289)
3 smart00702 P4Hc Prolyl 4-hydro 100.0 5.6E-37 1.2E-41 263.9 18.7 174 84-282 1-178 (178)
4 PRK05467 Fe(II)-dependent oxyg 100.0 2.9E-29 6.3E-34 223.9 15.2 165 85-283 1-178 (226)
5 PHA02813 hypothetical protein; 99.7 1E-17 2.2E-22 155.9 12.7 149 97-279 24-178 (354)
6 PHA02869 C4L/C10L-like gene fa 99.7 2.2E-17 4.8E-22 155.5 11.9 138 109-282 45-190 (418)
7 COG3128 PiuC Uncharacterized i 99.7 2.8E-16 6.1E-21 134.3 11.6 166 84-283 2-181 (229)
8 PF13640 2OG-FeII_Oxy_3: 2OG-F 99.6 3.5E-16 7.6E-21 122.0 7.1 96 164-282 1-100 (100)
9 KOG3710 EGL-Nine (EGLN) protei 98.9 1.7E-08 3.6E-13 89.4 12.6 169 83-284 52-240 (280)
10 PF13661 2OG-FeII_Oxy_4: 2OG-F 98.5 1.1E-07 2.4E-12 69.9 5.0 52 161-216 10-65 (70)
11 PF03336 Pox_C4_C10: Poxvirus 98.5 9.2E-07 2E-11 82.8 11.4 126 123-279 36-165 (339)
12 PF03171 2OG-FeII_Oxy: 2OG-Fe( 98.5 9.9E-08 2.1E-12 73.9 4.1 90 162-282 2-97 (98)
13 COG3751 EGL-9 Predicted prolin 98.4 7.5E-06 1.6E-10 74.3 12.8 101 163-285 137-242 (252)
14 TIGR02408 ectoine_ThpD ectoine 98.1 5.1E-05 1.1E-09 70.1 13.5 187 80-279 25-245 (277)
15 PHA02866 Hypothetical protein; 98.0 3.1E-05 6.7E-10 71.3 8.9 132 108-279 31-165 (333)
16 PF05721 PhyH: Phytanoyl-CoA d 97.8 0.00017 3.6E-09 61.6 9.6 170 86-272 6-206 (211)
17 PF13759 2OG-FeII_Oxy_5: Putat 97.7 0.00011 2.3E-09 57.6 6.9 91 167-277 5-98 (101)
18 KOG3844 Predicted component of 97.7 0.00044 9.5E-09 66.1 11.4 167 82-285 33-219 (476)
19 PF09859 Oxygenase-NA: Oxygena 97.5 0.00057 1.2E-08 58.1 7.8 102 163-283 63-172 (173)
20 TIGR01762 chlorin-enz chlorina 97.4 0.0095 2.1E-07 55.5 16.2 178 84-277 14-242 (288)
21 TIGR02466 conserved hypothetic 97.3 0.0018 3.9E-08 57.2 9.2 95 164-278 98-195 (201)
22 PF13532 2OG-FeII_Oxy_2: 2OG-F 96.7 0.011 2.3E-07 51.1 8.7 153 86-272 2-177 (194)
23 PRK15401 alpha-ketoglutarate-d 96.6 0.1 2.2E-06 46.6 14.5 159 82-272 16-196 (213)
24 PF12851 Tet_JBP: Oxygenase do 96.3 0.019 4E-07 49.5 7.6 79 174-282 86-170 (171)
25 PHA02923 hypothetical protein; 94.6 0.24 5.1E-06 46.1 9.2 98 140-279 43-142 (315)
26 KOG3200 Uncharacterized conser 94.2 0.17 3.6E-06 43.8 6.6 96 79-182 7-108 (224)
27 COG3826 Uncharacterized protei 91.8 0.9 2E-05 39.7 7.7 103 162-283 124-234 (236)
28 PLN02984 oxidoreductase, 2OG-F 90.2 3.7 8.1E-05 39.2 11.2 87 163-283 201-298 (341)
29 PLN03001 oxidoreductase, 2OG-F 89.0 4.6 0.0001 37.0 10.4 109 141-283 87-213 (262)
30 PF06822 DUF1235: Protein of u 86.4 6.5 0.00014 36.2 9.6 107 140-285 32-139 (266)
31 PLN02639 oxidoreductase, 2OG-F 86.1 9.6 0.00021 36.1 11.1 89 162-283 190-288 (337)
32 PLN02904 oxidoreductase 85.8 9.8 0.00021 36.5 11.0 87 163-283 209-305 (357)
33 COG3145 AlkB Alkylated DNA rep 85.2 16 0.00035 32.2 11.1 100 127-250 71-170 (194)
34 PLN02485 oxidoreductase 84.9 9.4 0.0002 36.0 10.4 89 163-283 185-287 (329)
35 PLN02276 gibberellin 20-oxidas 84.7 11 0.00025 36.0 10.9 87 162-282 206-302 (361)
36 PLN02912 oxidoreductase, 2OG-F 83.8 12 0.00027 35.6 10.8 88 162-283 197-294 (348)
37 PLN00417 oxidoreductase, 2OG-F 83.5 12 0.00026 35.8 10.5 88 163-283 204-301 (348)
38 COG5285 Protein involved in bi 83.3 5.1 0.00011 37.4 7.5 93 175-281 133-228 (299)
39 PLN02750 oxidoreductase, 2OG-F 83.2 13 0.00029 35.3 10.7 90 162-283 193-292 (345)
40 PLN02947 oxidoreductase 82.9 14 0.00031 35.6 10.8 87 163-283 226-322 (374)
41 PLN02515 naringenin,2-oxogluta 82.3 15 0.00033 35.2 10.7 89 163-283 196-294 (358)
42 PLN02254 gibberellin 3-beta-di 81.9 14 0.00029 35.6 10.2 87 163-282 211-307 (358)
43 PLN02758 oxidoreductase, 2OG-F 81.8 19 0.0004 34.6 11.1 87 163-282 212-309 (361)
44 PF14033 DUF4246: Protein of u 81.4 6.2 0.00013 39.7 7.9 96 176-287 364-482 (501)
45 PLN02216 protein SRG1 81.4 14 0.0003 35.4 10.1 88 163-283 211-308 (357)
46 PLN02365 2-oxoglutarate-depend 81.3 12 0.00025 34.9 9.3 109 143-282 125-248 (300)
47 PLN02299 1-aminocyclopropane-1 81.2 17 0.00036 34.3 10.4 88 163-283 159-256 (321)
48 PLN02997 flavonol synthase 81.1 10 0.00022 35.9 8.9 87 163-283 184-280 (325)
49 KOG3959 2-Oxoglutarate- and ir 80.2 2.5 5.5E-05 38.3 4.2 93 83-183 71-175 (306)
50 TIGR00568 alkb DNA alkylation 79.6 21 0.00046 30.6 9.6 86 141-250 74-159 (169)
51 PTZ00273 oxidase reductase; Pr 79.2 29 0.00063 32.5 11.3 87 163-283 178-275 (320)
52 COG3491 PcbC Isopenicillin N s 75.3 25 0.00054 33.3 9.4 89 161-282 173-271 (322)
53 PF10014 2OG-Fe_Oxy_2: 2OG-Fe 75.1 6.5 0.00014 34.4 5.3 99 140-271 70-179 (195)
54 PLN02403 aminocyclopropanecarb 75.1 32 0.00069 32.2 10.3 87 164-283 155-252 (303)
55 COG4340 Uncharacterized protei 74.9 7.6 0.00016 34.1 5.5 51 199-271 149-201 (226)
56 PLN02156 gibberellin 2-beta-di 74.1 41 0.0009 31.9 10.9 87 163-282 179-277 (335)
57 PLN02393 leucoanthocyanidin di 73.8 37 0.00081 32.5 10.6 88 163-283 214-311 (362)
58 PLN02704 flavonol synthase 72.9 17 0.00036 34.5 7.9 87 163-283 200-296 (335)
59 PLN03178 leucoanthocyanidin di 72.6 31 0.00066 33.1 9.7 88 163-284 212-309 (360)
60 PHA02985 hypothetical protein; 72.5 38 0.00083 31.2 9.6 106 140-285 39-144 (271)
61 PF02668 TauD: Taurine catabol 66.6 6.7 0.00015 34.6 3.6 38 235-280 219-258 (258)
62 KOG4176 Uncharacterized conser 65.4 1.3E+02 0.0027 28.8 11.9 115 141-286 190-307 (323)
63 KOG0143 Iron/ascorbate family 64.4 67 0.0014 30.4 10.0 88 163-282 177-274 (322)
64 PLN03002 oxidoreductase, 2OG-F 64.2 55 0.0012 31.0 9.4 91 163-283 183-284 (332)
65 KOG4459 Membrane-associated pr 60.0 1.7 3.6E-05 42.9 -1.7 72 192-284 364-435 (471)
66 cd00250 CAS_like Clavaminic ac 53.6 20 0.00043 32.3 4.3 40 235-282 218-260 (262)
67 PF13677 MotB_plug: Membrane M 52.9 38 0.00083 23.7 4.8 24 1-24 1-24 (58)
68 KOG1971 Lysyl hydroxylase [Pos 39.2 35 0.00076 33.4 3.7 75 192-283 280-356 (415)
69 TIGR02223 ftsN cell division p 36.6 1.2E+02 0.0027 28.4 6.8 33 73-105 80-126 (298)
70 PRK09965 3-phenylpropionate di 33.6 83 0.0018 24.3 4.5 49 197-272 4-52 (106)
71 cd03528 Rieske_RO_ferredoxin R 33.4 76 0.0016 23.7 4.1 48 199-272 4-51 (98)
72 PF03579 SHP: Small hydrophobi 31.2 66 0.0014 22.8 3.0 29 12-40 13-41 (64)
73 cd03474 Rieske_T4moC Toluene-4 28.0 1.2E+02 0.0026 23.2 4.6 27 237-272 26-52 (108)
74 PF11807 DUF3328: Domain of un 27.3 98 0.0021 26.2 4.3 8 176-183 160-167 (217)
75 PRK09553 tauD taurine dioxygen 27.3 40 0.00086 30.9 1.9 31 177-213 96-126 (277)
76 TIGR02410 carnitine_TMLD trime 27.0 60 0.0013 31.0 3.1 43 235-286 311-353 (362)
77 COG4813 ThuA Trehalose utiliza 26.9 4.6E+02 0.0099 23.4 8.3 15 236-250 181-195 (261)
78 COG2850 Uncharacterized conser 26.5 1.1E+02 0.0024 29.7 4.7 31 152-183 109-140 (383)
79 PF14927 Neurensin: Neurensin 26.2 1.2E+02 0.0025 25.4 4.2 11 7-17 32-42 (140)
80 cd03530 Rieske_NirD_small_Baci 25.2 1.2E+02 0.0026 22.8 3.9 25 239-272 28-52 (98)
81 TIGR02409 carnitine_bodg gamma 24.0 80 0.0017 30.1 3.4 44 235-286 312-357 (366)
82 PF14851 FAM176: FAM176 family 21.7 70 0.0015 27.1 2.2 23 21-43 22-44 (153)
83 PF13621 Cupin_8: Cupin-like d 21.1 1.5E+02 0.0034 25.6 4.4 41 235-284 207-248 (251)
84 PF07350 DUF1479: Protein of u 20.9 62 0.0013 31.9 1.9 38 236-282 318-356 (416)
85 PRK04081 hypothetical protein; 20.4 2.3E+02 0.005 25.1 5.1 35 73-107 59-100 (207)
86 PF00355 Rieske: Rieske [2Fe-2 20.3 1.8E+02 0.0039 21.5 4.1 29 236-273 26-54 (97)
No 1
>PLN00052 prolyl 4-hydroxylase; Provisional
Probab=100.00 E-value=1.8e-59 Score=435.58 Aligned_cols=216 Identities=53% Similarity=0.952 Sum_probs=198.4
Q ss_pred CCCcceEEEEecCCCEEEEcCCCCHHHHHHHHHHhcCcCCCceeEeCCCCCccccceeeccceeecCCccHHHHHHHHHH
Q 023050 71 GRAEQWVEVISWEPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTSSGTFLARGRDKIIRDIEKRI 150 (288)
Q Consensus 71 ~~~~~~~e~ls~~P~i~vi~nfLs~~EC~~Li~~a~~~~~~s~v~~~~~g~~~~~~~Rts~~~~l~~~~d~vv~~i~~ri 150 (288)
.-.+.++|+||++|+||+|+||||++||++||+++++.+++++++++.+|+...+++|||+++|++..+++++++|++||
T Consensus 41 ~~~~~kve~lS~~P~i~~~~nfLs~~Ecd~Li~la~~~l~~S~v~~~~~g~~~~s~~RTS~~~~l~~~~dpvv~~I~~Ri 120 (310)
T PLN00052 41 PFNASRVKAVSWQPRIFVYKGFLSDAECDHLVKLAKKKIQRSMVADNKSGKSVMSEVRTSSGMFLDKRQDPVVSRIEERI 120 (310)
T ss_pred CcCCceEEEecCCCCEEEECCcCCHHHHHHHHHhcccccccceeecCCCCccccCCCEEecceeecCCCCHHHHHHHHHH
Confidence 34788999999999999999999999999999999999999999888777777888999999999987789999999999
Q ss_pred HhhcCCCCCCCcccEEEecCCCCcccccccccccccccCCCCceEEEEEEEecCCCCCceeeecCCCCCCCCCCCccccc
Q 023050 151 ADFTFFPLENGEGLQVLHYEAGQKYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELS 230 (288)
Q Consensus 151 ~~~~~~p~~~~E~lqv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLND~~eGGeT~Fp~~~~~~s~~~~~~~~~ 230 (288)
++++++|.+++|.+||+||++||+|++|+|++.+..+...+++|++|+|+||||+++||||+||.... ....+.++.++
T Consensus 121 a~~t~lp~~~~E~lQVlrY~~Gq~Y~~H~D~~~~~~~~~~gg~R~aTvL~YLndv~~GGeT~FP~~~~-~~~~~~~~~~s 199 (310)
T PLN00052 121 AAWTFLPEENAENIQILRYEHGQKYEPHFDYFHDKINQALGGHRYATVLMYLSTVDKGGETVFPNAEG-WENQPKDDTFS 199 (310)
T ss_pred HHHhCCCcccCcceEEEecCCCCCCCCCCCccccccccccCCceeEEEEEEeccCCCCCceecCCccc-ccccccccchh
Confidence 99999999999999999999999999999998764444568999999999999999999999998743 22334567789
Q ss_pred ccCCcCeEEeCCCceEEEEecCCCCCCCCCCCcccccccccccEEEEEEeeeecccc
Q 023050 231 ECGKTGLSIKPKMGDALLFWSMKPDASLDPSSLHGGCPVIKGNKWSSTKWIRVNEYK 287 (288)
Q Consensus 231 ~c~~~~l~V~Pk~G~alvF~n~~~~g~~D~~~lH~g~PV~~G~K~i~~~W~~~~~~~ 287 (288)
+|++.+++|+|++|+||||+|+++||+.|++++|+||||++|+||++|+|||.++|.
T Consensus 200 ~c~~~gl~VkPkkG~ALlF~nl~~dG~~D~~SlHagcPVi~G~Kw~atkWi~~~~~~ 256 (310)
T PLN00052 200 ECAHKGLAVKPVKGDAVLFFSLHIDGVPDPLSLHGSCPVIEGEKWSAPKWIHIRSYE 256 (310)
T ss_pred hhhcCCeEeccCcceEEEEeccCCCCCCCcccccCCCeeecCeEEEEEEeeeccccc
Confidence 999999999999999999999999999999999999999999999999999999884
No 2
>KOG1591 consensus Prolyl 4-hydroxylase alpha subunit [Amino acid transport and metabolism]
Probab=100.00 E-value=7e-52 Score=380.60 Aligned_cols=263 Identities=47% Similarity=0.767 Sum_probs=215.3
Q ss_pred CCCCCCCc--hHHHHHHHHHHHHHHHHHHHhhccccCCC---CCCCCCCCCCCchhhhccccc------cCCCCCCCcce
Q 023050 8 RFPTRKSS--SSTLILTLLIMFTFAILILLAFGILSMPS---SSGDSRKANDLSSIVRKSMER------SEGDEGRAEQW 76 (288)
Q Consensus 8 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~ 76 (288)
+...+++. ..+.++.++.....+...+..+..+..+. ...+..-.++++......... ..++...++.|
T Consensus 10 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~c~g~~~~~~~~~~~~~~~~~~~~~~~~~ap~k 89 (289)
T KOG1591|consen 10 KLGILKSALSLLTEVFSILPESIRALDNLKQLEQLLDKEQEFTVYEQGCRGELPPLTKLTLRRLSCRNRAGPFLRLAPVK 89 (289)
T ss_pred eccchHhhhhhcchhhhcchhhHHHhhhhhhhhhhccccccccchhhhccCccCccchhHhhhhhcccccCcceeecchh
Confidence 44555543 34667777777777777777777777766 222222233333211110000 01456678999
Q ss_pred EEEEecCCCEEEEcCCCCHHHHHHHHHHhcCcCCCcee-EeCCCCCccccceeeccceeecCCccHHHHHHHHHHHhhcC
Q 023050 77 VEVISWEPRAFVYHNFLSKEECEYLINLATPHMRKSTV-VDSDTGKSKDSRVRTSSGTFLARGRDKIIRDIEKRIADFTF 155 (288)
Q Consensus 77 ~e~ls~~P~i~vi~nfLs~~EC~~Li~~a~~~~~~s~v-~~~~~g~~~~~~~Rts~~~~l~~~~d~vv~~i~~ri~~~~~ 155 (288)
+|++||+|++++||||||++||++|+.++++.+.++++ .+..+|......+|+|+++|+..+.++++++|++||+++++
T Consensus 90 ~E~lsw~P~~~~yhd~ls~~e~d~l~~lak~~l~~stv~~~~~~~~~~~~~~R~S~~t~l~~~~~~~~~~i~~ri~~~T~ 169 (289)
T KOG1591|consen 90 LEELSWDPRVVLYHDFLSDEECDHLISLAKPKLERSTVVADKGTGHSTTSAVRTSSGTFLPDGASPVVSRIEQRIADLTG 169 (289)
T ss_pred hhhcccCCceEeehhcCCHHHHHHHHHhhhhhhhceeeeccCCcccccceeeEecceeEecCCCCHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999999 45556777777799999999998778999999999999999
Q ss_pred CCCCCCcccEEEecCCCCccccccccccc---c-cccCCCCceEEEEEEEecCCCCCceeeecCCCCCCCCCCCcccccc
Q 023050 156 FPLENGEGLQVLHYEAGQKYEPHFDYFMD---E-FNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSE 231 (288)
Q Consensus 156 ~p~~~~E~lqv~rY~~G~~y~~H~D~~~~---~-~~~~~~~~R~~T~liYLND~~eGGeT~Fp~~~~~~s~~~~~~~~~~ 231 (288)
+|.+++|.+||++|+.||+|.+|+|++.+ . .+..++++|++|+++||+|+++||+|+||..+.
T Consensus 170 l~~e~~E~lqVlnYg~Gg~Y~~H~D~~~~~~~~~~~~~~~g~RiaT~l~yls~v~~GG~TvFP~~~~------------- 236 (289)
T KOG1591|consen 170 LPVENGESLQVLNYGLGGHYEPHYDYFLPEEDETFNGLNGGNRIATVLMYLSDVEQGGETVFPNLGM------------- 236 (289)
T ss_pred CCcccCccceEEEecCCccccccccccccccchhhhhcccCCcceeEEEEecccCCCCcccCCCCCC-------------
Confidence 99999999999999999999999999942 2 345678999999999999999999999998632
Q ss_pred cCCcCeEEeCCCceEEEEecCCCCCCCCCCCcccccccccccEEEEEEeeeecccc
Q 023050 232 CGKTGLSIKPKMGDALLFWSMKPDASLDPSSLHGGCPVIKGNKWSSTKWIRVNEYK 287 (288)
Q Consensus 232 c~~~~l~V~Pk~G~alvF~n~~~~g~~D~~~lH~g~PV~~G~K~i~~~W~~~~~~~ 287 (288)
.++|+|++|+|++|+|+++||..|+++.|++|||..|+||+.|+|+|...+.
T Consensus 237 ----~~~V~PkkGdal~wfnl~~~~~~d~~S~H~~CPv~~G~kw~~~~wi~~~~~~ 288 (289)
T KOG1591|consen 237 ----KPAVKPKKGDALFWFNLHPDGEGDPRSLHGGCPVLVGSKWIATKWIHEKNQE 288 (289)
T ss_pred ----cccccCCCCCeeEEEEccCCCCCCccccccCCCeeeccceeeeeeeeecccc
Confidence 2599999999999999999999999999999999999999999999998764
No 3
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues. Mammalian enzymes catalyse hydroxylation of collagen, for example. Prokaryotic enzymes might catalyse hydroxylation of antibiotic peptides. These are 2-oxoglutarate-dependent dioxygenases, requiring 2-oxoglutarate and dioxygen as cosubstrates and ferrous iron as a cofactor.
Probab=100.00 E-value=5.6e-37 Score=263.93 Aligned_cols=174 Identities=44% Similarity=0.739 Sum_probs=151.5
Q ss_pred CCEEEEcCCCCHHHHHHHHHHhcCcCCCceeEeCCCCCccccceeeccceeecCCc-cHHHHHHHHHHHhhcCCC---CC
Q 023050 84 PRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTSSGTFLARGR-DKIIRDIEKRIADFTFFP---LE 159 (288)
Q Consensus 84 P~i~vi~nfLs~~EC~~Li~~a~~~~~~s~v~~~~~g~~~~~~~Rts~~~~l~~~~-d~vv~~i~~ri~~~~~~p---~~ 159 (288)
|.|++++||||++||++||+++++...++.+.++..+....+++|+|..+|++... ++++++|++||.++++.+ ..
T Consensus 1 P~i~~~~~~ls~~ec~~li~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~l~~~~~~~~~~~l~~~i~~~~~~~~~~~~ 80 (178)
T smart00702 1 PGVVVFHDFLSPAECQKLLEEAEPLGWRGEVTRGDTNPNHDSKYRQSNGTWLELLKGDLVIERIRQRLADFLGLLRGLPL 80 (178)
T ss_pred CcEEEECCCCCHHHHHHHHHHhhhhcccceeecCCCCccccCCCEeecceecCCCCCCHHHHHHHHHHHHHHCCCchhhc
Confidence 78999999999999999999999987788776654433356789999999998764 789999999999999998 67
Q ss_pred CCcccEEEecCCCCcccccccccccccccCCCCceEEEEEEEecCCCCCceeeecCCCCCCCCCCCcccccccCCcCeEE
Q 023050 160 NGEGLQVLHYEAGQKYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTGLSI 239 (288)
Q Consensus 160 ~~E~lqv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLND~~eGGeT~Fp~~~~~~s~~~~~~~~~~c~~~~l~V 239 (288)
..|.+|+.+|.+|++|.+|+|..... ..++|.+|+++||||+++||+|.|+..+. .....|
T Consensus 81 ~~~~~~~~~Y~~g~~~~~H~D~~~~~----~~~~r~~T~~~yLn~~~~GG~~~f~~~~~---------------~~~~~v 141 (178)
T smart00702 81 SAEDAQVARYGPGGHYGPHVDNFEDD----ENGDRIATFLLYLNDVEEGGELVFPGLGL---------------MVCATV 141 (178)
T ss_pred cCcceEEEEECCCCcccCcCCCCCCC----CCCCeEEEEEEEeccCCcCceEEecCCCC---------------ccceEE
Confidence 88999999999999999999998642 12689999999999999999999997531 135699
Q ss_pred eCCCceEEEEecCCCCCCCCCCCcccccccccccEEEEEEeee
Q 023050 240 KPKMGDALLFWSMKPDASLDPSSLHGGCPVIKGNKWSSTKWIR 282 (288)
Q Consensus 240 ~Pk~G~alvF~n~~~~g~~D~~~lH~g~PV~~G~K~i~~~W~~ 282 (288)
+|++|++|+|++. +++++|++|||.+|+||++++|+|
T Consensus 142 ~P~~G~~v~f~~~------~~~~~H~v~pv~~G~r~~~~~W~~ 178 (178)
T smart00702 142 KPKKGDLLFFPSG------RGRSLHGVCPVTRGSRWAITGWIR 178 (178)
T ss_pred eCCCCcEEEEeCC------CCCccccCCcceeCCEEEEEEEEC
Confidence 9999999999974 237999999999999999999986
No 4
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional
Probab=99.96 E-value=2.9e-29 Score=223.87 Aligned_cols=165 Identities=25% Similarity=0.334 Sum_probs=126.1
Q ss_pred CEEEEcCCCCHHHHHHHHHHhcCcCCCceeEeCC-CCCccccceeeccceeecCCccHHHHHHHHHHHhhc---------
Q 023050 85 RAFVYHNFLSKEECEYLINLATPHMRKSTVVDSD-TGKSKDSRVRTSSGTFLARGRDKIIRDIEKRIADFT--------- 154 (288)
Q Consensus 85 ~i~vi~nfLs~~EC~~Li~~a~~~~~~s~v~~~~-~g~~~~~~~Rts~~~~l~~~~d~vv~~i~~ri~~~~--------- 154 (288)
.|++|+|+||++||+++++..+.. ...++. |.+...+++|++.++- . ++++++.|.++|.+.+
T Consensus 1 Mi~~I~~vLs~eec~~~~~~le~~----~~~dg~~taG~~~~~vKnN~ql~--~-d~~~a~~l~~~i~~~L~~~~l~~sa 73 (226)
T PRK05467 1 MLLHIPDVLSPEEVAQIRELLDAA----EWVDGRVTAGAQAAQVKNNQQLP--E-DSPLARELGNLILDALTRNPLFFSA 73 (226)
T ss_pred CeeeecccCCHHHHHHHHHHHHhc----CCccCCcCcCccchhcccccccC--C-CCHHHHHHHHHHHHHHhcCchhhhh
Confidence 378999999999999999999863 222322 2334567899987654 2 2567777777766543
Q ss_pred CCCCCCCcccEEEecCCCCcccccccccccccc-cCCCCceEEEEEEEecCCC--CCceeeecCCCCCCCCCCCcccccc
Q 023050 155 FFPLENGEGLQVLHYEAGQKYEPHFDYFMDEFN-TKNGGQRMATVLMYLSDVE--EGGETVFPNAQGNISAVPWWNELSE 231 (288)
Q Consensus 155 ~~p~~~~E~lqv~rY~~G~~y~~H~D~~~~~~~-~~~~~~R~~T~liYLND~~--eGGeT~Fp~~~~~~s~~~~~~~~~~ 231 (288)
++|... .+++|.||.+|++|++|+|++..... .....+|.+|+++||||++ +||||+|+...
T Consensus 74 ~lp~~i-~~~~f~rY~~G~~y~~H~D~~~~~~~~~~~~~rs~lS~~lyLnd~~~yeGGEl~~~~~~-------------- 138 (226)
T PRK05467 74 ALPRKI-HPPLFNRYEGGMSYGFHVDNAVRSLPGTGGRVRTDLSATLFLSDPDDYDGGELVIEDTY-------------- 138 (226)
T ss_pred cccccc-ccceEEEECCCCccCccccCCcccCCCCCcceeEEEEEEEEeCCCCCCcCCceEEecCC--------------
Confidence 344333 58899999999999999999864211 1112356899999999874 89999998642
Q ss_pred cCCcCeEEeCCCceEEEEecCCCCCCCCCCCcccccccccccEEEEEEeeee
Q 023050 232 CGKTGLSIKPKMGDALLFWSMKPDASLDPSSLHGGCPVIKGNKWSSTKWIRV 283 (288)
Q Consensus 232 c~~~~l~V~Pk~G~alvF~n~~~~g~~D~~~lH~g~PV~~G~K~i~~~W~~~ 283 (288)
+...|+|++|++|+|++ .++|+|+||++|.||+++.|++.
T Consensus 139 ---g~~~Vkp~aG~~vlfps---------~~lH~v~pVt~G~R~~~~~Wi~S 178 (226)
T PRK05467 139 ---GEHRVKLPAGDLVLYPS---------TSLHRVTPVTRGVRVASFFWIQS 178 (226)
T ss_pred ---CcEEEecCCCeEEEECC---------CCceeeeeccCccEEEEEecHHH
Confidence 35789999999999986 79999999999999999999874
No 5
>PHA02813 hypothetical protein; Provisional
Probab=99.75 E-value=1e-17 Score=155.90 Aligned_cols=149 Identities=17% Similarity=0.229 Sum_probs=111.1
Q ss_pred HHHHHHHHhcCcCCCceeEeCCCC-CccccceeeccceeecCCccHHHHHHHHHHHhhc-CCC----CCCCcccEEEecC
Q 023050 97 ECEYLINLATPHMRKSTVVDSDTG-KSKDSRVRTSSGTFLARGRDKIIRDIEKRIADFT-FFP----LENGEGLQVLHYE 170 (288)
Q Consensus 97 EC~~Li~~a~~~~~~s~v~~~~~g-~~~~~~~Rts~~~~l~~~~d~vv~~i~~ri~~~~-~~p----~~~~E~lqv~rY~ 170 (288)
+.-.+|+...-.+.+|.+.+..+| +....++|+|+++.++.. +.+.++|++.|.+-+ +.+ +..+|.++++||.
T Consensus 24 ~l~~~i~~~d~~~~~s~i~~~~~~ge~l~~~iRnNkrviid~~-~~L~erIr~~Lp~~l~~~~lv~~V~vnerirfyrY~ 102 (354)
T PHA02813 24 IIMDMIKYKDIIWEESKVFDHEKGGEVINTNERQCKQYIIRGL-DDIFKVIRKKLLLSFEFPQKISDIILDNTITLIKYE 102 (354)
T ss_pred HHHHHHhccccCccccceeccccCceEEccccccceEEEEcCH-HHHHHHHHHhhHHHhcCCccceeEEEcceEEEEEEC
Confidence 333344433334677888875555 557789999999998853 455566655555433 332 4678999999999
Q ss_pred CCCcccccccccccccccCCCCceEEEEEEEecCCCCCceeeecCCCCCCCCCCCcccccccCCcCeEEeCCCceEEEEe
Q 023050 171 AGQKYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTGLSIKPKMGDALLFW 250 (288)
Q Consensus 171 ~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLND~~eGGeT~Fp~~~~~~s~~~~~~~~~~c~~~~l~V~Pk~G~alvF~ 250 (288)
+||+|.+|.|+.... .. ..+.+|+++|||++++||||.|...+ .-+|. .|++|+|.
T Consensus 103 kGq~F~~H~Dg~~~r---~k-~~s~~tLLLYLN~~~~GGeT~f~~~~------------------~tsI~--~g~dlLFd 158 (354)
T PHA02813 103 KGDFFNNHRDFIHFK---SK-NCYCYHLVLYLNNTSKGGNTNIHIKD------------------NTIFS--TKNDVLFD 158 (354)
T ss_pred CCcccCcccCCceee---cC-CceEEEEEEEEeccCCCCceEEEcCC------------------CceEe--ecceEEEe
Confidence 999999999986531 11 22899999999999999999998642 11465 99999995
Q ss_pred cCCCCCCCCCCCcccccccccccEEEEEE
Q 023050 251 SMKPDASLDPSSLHGGCPVIKGNKWSSTK 279 (288)
Q Consensus 251 n~~~~g~~D~~~lH~g~PV~~G~K~i~~~ 279 (288)
....|+|++|.+|.||++..
T Consensus 159 ---------h~l~Heg~~V~sG~KyVa~~ 178 (354)
T PHA02813 159 ---------KTLNHSSDIITDGEKNIALI 178 (354)
T ss_pred ---------cccccCCcEeccCeEEEEEE
Confidence 68999999999999998754
No 6
>PHA02869 C4L/C10L-like gene family protein; Provisional
Probab=99.73 E-value=2.2e-17 Score=155.54 Aligned_cols=138 Identities=20% Similarity=0.232 Sum_probs=109.0
Q ss_pred CCCceeEeCCCC-CccccceeeccceeecCCccHHHHHHHHHHHhhc-----CC--CCCCCcccEEEecCCCCccccccc
Q 023050 109 MRKSTVVDSDTG-KSKDSRVRTSSGTFLARGRDKIIRDIEKRIADFT-----FF--PLENGEGLQVLHYEAGQKYEPHFD 180 (288)
Q Consensus 109 ~~~s~v~~~~~g-~~~~~~~Rts~~~~l~~~~d~vv~~i~~ri~~~~-----~~--p~~~~E~lqv~rY~~G~~y~~H~D 180 (288)
+.+|.+.+..+| +..+...|+|.++.+.. .+.+.|.+||+.+. +. .++.+|.++++||.+||+|++|.|
T Consensus 45 ~~~s~i~~~~~g~e~~~~~~~ksKqii~e~---~La~~L~erlr~lLp~~lk~~v~~V~lnerirfyrY~kGq~F~~H~D 121 (418)
T PHA02869 45 CEDSKIFFPEKRTELLSIKDRKSKQIVFEN---SLNDDLLKKLHALIYDELSTVVDSVTVENTVTLIMYEKGDYFARHRD 121 (418)
T ss_pred cccceeeccccCceeEeeccccceeEEech---HHHHHHHHHHHHhhhHHhhCccceEEEcceEEEEEECCCCccccccc
Confidence 567888886667 34566679999887763 45566666665542 32 457789999999999999999999
Q ss_pred ccccccccCCCCceEEEEEEEecCCCCCceeeecCCCCCCCCCCCcccccccCCcCeEEeCCCceEEEEecCCCCCCCCC
Q 023050 181 YFMDEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTGLSIKPKMGDALLFWSMKPDASLDP 260 (288)
Q Consensus 181 ~~~~~~~~~~~~~R~~T~liYLND~~eGGeT~Fp~~~~~~s~~~~~~~~~~c~~~~l~V~Pk~G~alvF~n~~~~g~~D~ 260 (288)
+... ..+....+|+++|||++++||||.|+.. ....|.|++| |+|. .
T Consensus 122 g~~~----rs~e~s~~tLLLYLNd~~~GGET~f~~~------------------~~~sI~pksg--LLFd---------h 168 (418)
T PHA02869 122 FSTV----FSKNIICVHLLLYLEQPETGGETVIYID------------------NNTSVKLKTD--HLFD---------K 168 (418)
T ss_pred Ccee----cCCCEEEEEEEEEEeccCCCCceEEEeC------------------CCceEecCCC--eEec---------c
Confidence 8653 2356678999999999999999999972 2467999999 8884 6
Q ss_pred CCcccccccccccEEEEEEeee
Q 023050 261 SSLHGGCPVIKGNKWSSTKWIR 282 (288)
Q Consensus 261 ~~lH~g~PV~~G~K~i~~~W~~ 282 (288)
...|+|++|.+|.||+++.=+-
T Consensus 169 ~l~Heg~~V~sG~KyVartDVm 190 (418)
T PHA02869 169 TIEHESITVESGRKCVALFDVL 190 (418)
T ss_pred ccccCCcEeecCeEEEEEEEEE
Confidence 8999999999999999976543
No 7
>COG3128 PiuC Uncharacterized iron-regulated protein [Function unknown]
Probab=99.68 E-value=2.8e-16 Score=134.26 Aligned_cols=166 Identities=22% Similarity=0.298 Sum_probs=118.4
Q ss_pred CCEEEEcCCCCHHHHHHHHHHhcCcCCCceeEeCC-CCCccccceeeccceeecCCccHHHHHHHHHHHhh-------c-
Q 023050 84 PRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSD-TGKSKDSRVRTSSGTFLARGRDKIIRDIEKRIADF-------T- 154 (288)
Q Consensus 84 P~i~vi~nfLs~~EC~~Li~~a~~~~~~s~v~~~~-~g~~~~~~~Rts~~~~l~~~~d~vv~~i~~ri~~~-------~- 154 (288)
+..+.|+.+||+++|.++.+..+. +..+++. +-+.+...+|++.++-.+ .+..+.+..-|.+. +
T Consensus 2 ~m~lhIp~VLs~a~va~iRa~l~~----A~w~dGrat~g~q~a~vk~n~qlp~~---s~l~~~vg~~il~al~~~plff~ 74 (229)
T COG3128 2 IMMLHIPEVLSEAQVARIRAALEQ----AEWVDGRATQGPQGAQVKNNLQLPQD---SALARELGNEILQALTAHPLFFA 74 (229)
T ss_pred ceEEechhhCCHHHHHHHHHHHhh----ccccccccccCcchhhhhccccCCcc---cHHHHHHHHHHHHHHHhchhHHH
Confidence 346679999999999999988763 3344443 222344566777653322 34444443333221 1
Q ss_pred -CCCCCCCcccEEEecCCCCcccccccccccccccCCC--CceEEEEEEEecCCC--CCceeeecCCCCCCCCCCCcccc
Q 023050 155 -FFPLENGEGLQVLHYEAGQKYEPHFDYFMDEFNTKNG--GQRMATVLMYLSDVE--EGGETVFPNAQGNISAVPWWNEL 229 (288)
Q Consensus 155 -~~p~~~~E~lqv~rY~~G~~y~~H~D~~~~~~~~~~~--~~R~~T~liYLND~~--eGGeT~Fp~~~~~~s~~~~~~~~ 229 (288)
.+|. ..+++++.+|+.|++|.+|.|+.........+ -...+++.+||+|++ +|||++..+..
T Consensus 75 aALp~-t~~~P~Fn~Y~eg~~f~fHvDgavr~~hp~~~~~lrtdls~tlfl~DPedYdGGeLVv~dtY------------ 141 (229)
T COG3128 75 AALPR-TCLPPLFNRYQEGDFFGFHVDGAVRSIHPGSGFRLRTDLSCTLFLSDPEDYDGGELVVNDTY------------ 141 (229)
T ss_pred hhccc-ccCCchhhhccCCCcccccccCcccccCCCCCceeEeeeeeeeecCCccccCCceEEEeccc------------
Confidence 2332 45789999999999999999997653221222 123467889999986 89999998753
Q ss_pred cccCCcCeEEeCCCceEEEEecCCCCCCCCCCCcccccccccccEEEEEEeeee
Q 023050 230 SECGKTGLSIKPKMGDALLFWSMKPDASLDPSSLHGGCPVIKGNKWSSTKWIRV 283 (288)
Q Consensus 230 ~~c~~~~l~V~Pk~G~alvF~n~~~~g~~D~~~lH~g~PV~~G~K~i~~~W~~~ 283 (288)
+...||-.+|++|+|++ .++|++.||+.|+|+....|++.
T Consensus 142 -----g~h~VklPAGdLVlypS---------tSlH~VtPVTRg~R~asffW~qs 181 (229)
T COG3128 142 -----GNHRVKLPAGDLVLYPS---------TSLHEVTPVTRGERFASFFWIQS 181 (229)
T ss_pred -----cceEEeccCCCEEEccc---------ccceeccccccCceEEEeeehHH
Confidence 46889999999999996 89999999999999999999864
No 8
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A ....
Probab=99.64 E-value=3.5e-16 Score=121.99 Aligned_cols=96 Identities=36% Similarity=0.574 Sum_probs=70.1
Q ss_pred cEEEecCCCCcccccccccccccccCCCCceEEEEEEEecCCC---CCceeeecCCCCCCCCCCCcccccccCCcCeEEe
Q 023050 164 LQVLHYEAGQKYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVE---EGGETVFPNAQGNISAVPWWNELSECGKTGLSIK 240 (288)
Q Consensus 164 lqv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLND~~---eGGeT~Fp~~~~~~s~~~~~~~~~~c~~~~l~V~ 240 (288)
+|+.+|.+|++|+||.|... ...+.+|+++|||+++ +||+|+|.... ... .....+. ...++
T Consensus 1 ~~~~~y~~G~~~~~H~D~~~-------~~~~~~t~llyL~~~~~~~~GG~l~~~~~~-~~~--~~~~~~~-----~~~~~ 65 (100)
T PF13640_consen 1 MQLNRYPPGGFFGPHTDNSY-------DPHRRVTLLLYLNDPEWEFEGGELEFYPSK-DSD--DVSREVE-----DFDIV 65 (100)
T ss_dssp -EEEEEETTEEEEEEESSSC-------CCSEEEEEEEESS-CS-HCEE--EEETTTS--TS--STCEEEG-----GGSEE
T ss_pred CEEEEECcCCEEeeeECCCC-------CCcceEEEEEEECCCCcccCCCEEEEeccc-cCC--CcceEEE-----ecccc
Confidence 48999999999999999753 3579999999999887 99999998642 000 0000010 11233
Q ss_pred CCCceEEEEecCCCCCCCCCCCccccccc-ccccEEEEEEeee
Q 023050 241 PKMGDALLFWSMKPDASLDPSSLHGGCPV-IKGNKWSSTKWIR 282 (288)
Q Consensus 241 Pk~G~alvF~n~~~~g~~D~~~lH~g~PV-~~G~K~i~~~W~~ 282 (288)
|+.|++|+|++ ..++|++.|| ..|.|++++.|++
T Consensus 66 p~~g~~v~F~~--------~~~~H~v~~v~~~~~R~~l~~~~~ 100 (100)
T PF13640_consen 66 PKPGRLVIFPS--------DNSLHGVTPVGEGGRRYSLTFWFH 100 (100)
T ss_dssp -BTTEEEEEES--------CTCEEEEEEE-EESEEEEEEEEEE
T ss_pred CCCCEEEEEeC--------CCCeecCcccCCCCCEEEEEEEEC
Confidence 99999999986 4899999999 9999999999986
No 9
>KOG3710 consensus EGL-Nine (EGLN) protein [Signal transduction mechanisms]
Probab=98.93 E-value=1.7e-08 Score=89.36 Aligned_cols=169 Identities=25% Similarity=0.380 Sum_probs=111.3
Q ss_pred CCCEEEEcCCCCHHHHHHHHHHhcC-----cCCCceeEeCCCCCccccceeeccceeecCCcc--HHHHH----HHHHHH
Q 023050 83 EPRAFVYHNFLSKEECEYLINLATP-----HMRKSTVVDSDTGKSKDSRVRTSSGTFLARGRD--KIIRD----IEKRIA 151 (288)
Q Consensus 83 ~P~i~vi~nfLs~~EC~~Li~~a~~-----~~~~s~v~~~~~g~~~~~~~Rts~~~~l~~~~d--~vv~~----i~~ri~ 151 (288)
+=.+.+++|||-.+--+.+.+..+. .+.+.+++.... ...+++|.....|+...+. ..+.. +..-+.
T Consensus 52 e~g~~vvd~flg~~~g~~v~~ev~~l~~~G~f~dgql~~~~~--~~~k~iRgd~i~wi~G~e~gc~~i~~L~s~~d~~i~ 129 (280)
T KOG3710|consen 52 EYGICVVDNFLGSETGKFILKEVEALYETGAFRDGQLVSPDA--FHSKDIRGDKITWVGGNEPGCETIMLLPSPIDSVIL 129 (280)
T ss_pred hcceEEEechhhHHHHHHHHHHHHHHHhccCccCceeccCcC--CcchhhccCCceEecCCCCCccceeeecccchhhhh
Confidence 4457889999998876666655543 355555554322 2334788888999986421 11111 111111
Q ss_pred hh---cCCCCCCCcccEEEecCC-CCcccccccccccccccCCCCceEEEEEEEecC---CC-CCcee-eecCCCCCCCC
Q 023050 152 DF---TFFPLENGEGLQVLHYEA-GQKYEPHFDYFMDEFNTKNGGQRMATVLMYLSD---VE-EGGET-VFPNAQGNISA 222 (288)
Q Consensus 152 ~~---~~~p~~~~E~lqv~rY~~-G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLND---~~-eGGeT-~Fp~~~~~~s~ 222 (288)
.. .+--.-.-..-.|..|.. |-.|-.|+|+.. +-.|.+|++.|||. +. .||.+ .||....
T Consensus 130 h~~~r~~~~~~gRtkAMVAcYPGNGtgYVrHVDNP~-------gDGRcITcIYYlNqNWD~kv~Gg~Lri~pe~~~---- 198 (280)
T KOG3710|consen 130 HCNGRLGSYIIGRTKAMVACYPGNGTGYVRHVDNPH-------GDGRCITCIYYLNQNWDVKVHGGILRIFPEGST---- 198 (280)
T ss_pred hhccccccccccceeEEEEEecCCCceeeEeccCCC-------CCceEEEEEEEcccCcceeeccceeEeccCCCC----
Confidence 11 010011124567889984 678999999753 45699999999995 33 45555 6676543
Q ss_pred CCCcccccccCCcCeEEeCCCceEEEEecCCCCCCCCCCCcccccccccccEEEEEEeeeec
Q 023050 223 VPWWNELSECGKTGLSIKPKMGDALLFWSMKPDASLDPSSLHGGCPVIKGNKWSSTKWIRVN 284 (288)
Q Consensus 223 ~~~~~~~~~c~~~~l~V~Pk~G~alvF~n~~~~g~~D~~~lH~g~PV~~G~K~i~~~W~~~~ 284 (288)
.-..|.|+-++.||||| |.+-.|++.|+.. .||.++.|+-..
T Consensus 199 ------------~~adieP~fdrLlffwS-------drrnPhev~Pa~~-tryaitvwyfda 240 (280)
T KOG3710|consen 199 ------------TFADIEPKFDRLLFFWS-------DRRNPHEVQPAYA-TRYAITVWYFDA 240 (280)
T ss_pred ------------cccccCcCCCeEEEEEe-------cCCCccccccccc-cceEEEEEEecc
Confidence 24569999999999999 6788999999987 699999998643
No 10
>PF13661 2OG-FeII_Oxy_4: 2OG-Fe(II) oxygenase superfamily
Probab=98.55 E-value=1.1e-07 Score=69.87 Aligned_cols=52 Identities=27% Similarity=0.464 Sum_probs=43.5
Q ss_pred CcccEEEecCCCCcccccccccccccccCCCCceEEEEEEEec----CCCCCceeeecCC
Q 023050 161 GEGLQVLHYEAGQKYEPHFDYFMDEFNTKNGGQRMATVLMYLS----DVEEGGETVFPNA 216 (288)
Q Consensus 161 ~E~lqv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLN----D~~eGGeT~Fp~~ 216 (288)
.+.+++.+|..|++|++|.|..... .+.+|.+|+++||| +..+||++.|...
T Consensus 10 ~~~~~~~~~~~g~~~~~H~D~~~~~----~~~~r~~t~llYLn~~w~~d~~Gg~~~f~~~ 65 (70)
T PF13661_consen 10 RPNFRFYRYRRGDFFGWHVDADPSS----SGKRRFLTLLLYLNEDWDEDFGGGELFFDDD 65 (70)
T ss_pred CcceeEEEcCCCCEeeeeEcCCccc----cccceeEEEEEEecccccCccCCcEEEEeCC
Confidence 4678999999999999999987532 26889999999999 4567999999864
No 11
>PF03336 Pox_C4_C10: Poxvirus C4/C10 protein; InterPro: IPR005004 This is a family of proteins expressed by members of the Poxviridae.
Probab=98.52 E-value=9.2e-07 Score=82.78 Aligned_cols=126 Identities=21% Similarity=0.271 Sum_probs=91.0
Q ss_pred cccceeeccceeecC-CccHHHHHHHHHHHhhcCC---CCCCCcccEEEecCCCCcccccccccccccccCCCCceEEEE
Q 023050 123 KDSRVRTSSGTFLAR-GRDKIIRDIEKRIADFTFF---PLENGEGLQVLHYEAGQKYEPHFDYFMDEFNTKNGGQRMATV 198 (288)
Q Consensus 123 ~~~~~Rts~~~~l~~-~~d~vv~~i~~ri~~~~~~---p~~~~E~lqv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~ 198 (288)
.+...|.|++..+.. ..+.+.++|++.|..-+-- .+...+.+.+.+|+.|++|+.|.|.... ......-.++
T Consensus 36 ~d~~~r~sk~iv~~~~~~~dI~~~ik~~l~~~lk~~v~~V~V~n~iTfikY~kGd~f~~~~d~~~~----~~~n~~~y~L 111 (339)
T PF03336_consen 36 FDHEFRKSKQIVIEDSLNDDIFSKIKNLLYDELKNVVEDVIVDNTITFIKYEKGDFFDNHRDFIKR----DSKNCLEYHL 111 (339)
T ss_pred ccccccccceEEEeccchHHHHHHHHHHHHHHhhcceeEEEEcceEEEEEEccCcchhhhccccee----ccCCceEEEE
Confidence 344488898877763 3467888887776653321 2345678999999999999999994332 3445678999
Q ss_pred EEEecCCCCCceeeecCCCCCCCCCCCcccccccCCcCeEEeCCCceEEEEecCCCCCCCCCCCcccccccccccEEEEE
Q 023050 199 LMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTGLSIKPKMGDALLFWSMKPDASLDPSSLHGGCPVIKGNKWSST 278 (288)
Q Consensus 199 liYLND~~eGGeT~Fp~~~~~~s~~~~~~~~~~c~~~~l~V~Pk~G~alvF~n~~~~g~~D~~~lH~g~PV~~G~K~i~~ 278 (288)
++|||.+.+||+|.+.-... ..--|. .++-++| |....|++.+|.+|.|++|.
T Consensus 112 vLyL~~~~~GGktkiyi~~~----------------~~tvI~--~~~DvLF---------dKsl~h~s~~V~~G~K~VAl 164 (339)
T PF03336_consen 112 VLYLNNPENGGKTKIYIDPN----------------DNTVIS--TSEDVLF---------DKSLNHESIIVEEGRKIVAL 164 (339)
T ss_pred EEEEeccCCCceEEEEECCC----------------Cceeee--ccccEEE---------eccccccceEeccCeEEEEE
Confidence 99999999999999873211 111143 3666778 46899999999999999964
Q ss_pred E
Q 023050 279 K 279 (288)
Q Consensus 279 ~ 279 (288)
.
T Consensus 165 ~ 165 (339)
T PF03336_consen 165 F 165 (339)
T ss_pred E
Confidence 3
No 12
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit. The holoenzyme has the activity (1.14.11.2 from EC) catalysing the reaction: Procollagen L-proline + 2-oxoglutarate + O2 = procollagen trans-4-hydroxy-L-proline + succinate + CO2. The full enzyme consists of a alpha2 beta2 complex with the alpha subunit contributing most of the parts of the active site []. The family also includes lysyl hydrolases, isopenicillin synthases and AlkB. ; GO: 0016491 oxidoreductase activity, 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process; PDB: 3ON7_D 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A ....
Probab=98.51 E-value=9.9e-08 Score=73.87 Aligned_cols=90 Identities=22% Similarity=0.335 Sum_probs=56.6
Q ss_pred cccEEEecC---CCCcccccccccccccccCCCCceEEEEEEEecCCCCCceeeecCCCCCCCCCCCcccccccCCcCeE
Q 023050 162 EGLQVLHYE---AGQKYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTGLS 238 (288)
Q Consensus 162 E~lqv~rY~---~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLND~~eGGeT~Fp~~~~~~s~~~~~~~~~~c~~~~l~ 238 (288)
+.+++.+|. .+..+.+|.|.. .+.+|++++ +++|++.|...+ ..+.
T Consensus 2 ~~~~~~~Y~~~~~~~~~~~H~D~~----------~~~~Til~~----~~~~gL~~~~~~-----------------~~~~ 50 (98)
T PF03171_consen 2 SQLRLNRYPPPENGVGIGPHTDDE----------DGLLTILFQ----DEVGGLQVRDDG-----------------EWVD 50 (98)
T ss_dssp -EEEEEEE-SCCGCEEEEEEEES------------SSEEEEEE----TSTS-EEEEETT-----------------EEEE
T ss_pred CEEEEEECCCcccCCceeCCCcCC----------CCeEEEEec----ccchheeccccc-----------------cccC
Confidence 468999999 889999999974 468999999 668899998642 3466
Q ss_pred EeCCCceEEEEecC-C--CCCCCCCCCcccccccccccEEEEEEeee
Q 023050 239 IKPKMGDALLFWSM-K--PDASLDPSSLHGGCPVIKGNKWSSTKWIR 282 (288)
Q Consensus 239 V~Pk~G~alvF~n~-~--~~g~~D~~~lH~g~PV~~G~K~i~~~W~~ 282 (288)
|.|..+..++.... . -.+......+|+++++.+|.|++++.|++
T Consensus 51 v~~~~~~~~v~~G~~l~~~t~g~~~~~~HrV~~~~~~~R~s~~~f~~ 97 (98)
T PF03171_consen 51 VPPPPGGFIVNFGDALEILTNGRYPATLHRVVPPTEGERYSLTFFLR 97 (98)
T ss_dssp ----TTCEEEEEBHHHHHHTTTSS----EEEE--STS-EEEEEEEEE
T ss_pred ccCccceeeeeceeeeecccCCccCCceeeeEcCCCCCEEEEEEEEC
Confidence 77777665555421 1 11234678999999999999999999986
No 13
>COG3751 EGL-9 Predicted proline hydroxylase [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=7.5e-06 Score=74.32 Aligned_cols=101 Identities=29% Similarity=0.321 Sum_probs=77.4
Q ss_pred ccEEEecCCCCcccccccccccccccCCCCceEEEEEEEecCC---CCCcee-eecCCCCCCCCCCCcccccccCCcCeE
Q 023050 163 GLQVLHYEAGQKYEPHFDYFMDEFNTKNGGQRMATVLMYLSDV---EEGGET-VFPNAQGNISAVPWWNELSECGKTGLS 238 (288)
Q Consensus 163 ~lqv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLND~---~eGGeT-~Fp~~~~~~s~~~~~~~~~~c~~~~l~ 238 (288)
+.|+.-|.+|.+|..|-|.+.+ ...|.+|.++|+|.. +-|||. -|+....+... +..-..
T Consensus 137 e~~~~~y~~G~~l~~H~D~~~~------~~~R~~~yv~y~~r~wkpe~GGeL~l~~s~~~~~~~----------~~~~~t 200 (252)
T COG3751 137 EGQITVYNPGCFLLKHDDNGRD------KDIRLATYVYYLTREWKPEYGGELRLFHSLQKNNTA----------ADSFKT 200 (252)
T ss_pred eeeeeEecCCceeEeecccCCC------ccceEEEEEeccCCCCCcCCCCceeecccccccccc----------cccccc
Confidence 7999999999999999998753 457999999999984 679999 77765432110 113467
Q ss_pred EeCCCceEEEEecCCCCCCCCCCCcccccccc-cccEEEEEEeeeecc
Q 023050 239 IKPKMGDALLFWSMKPDASLDPSSLHGGCPVI-KGNKWSSTKWIRVNE 285 (288)
Q Consensus 239 V~Pk~G~alvF~n~~~~g~~D~~~lH~g~PV~-~G~K~i~~~W~~~~~ 285 (288)
|.|+-+.+++|-+-. ..+.|.+.+|. .+.|.++++|++.+.
T Consensus 201 i~P~fn~lv~F~s~~------~Hs~h~V~~~~~~~~RlsV~GW~r~~~ 242 (252)
T COG3751 201 IAPVFNSLVFFKSRP------SHSVHSVEEPYAAADRLSVTGWFRRPG 242 (252)
T ss_pred cCCCCceEEEEEecC------CccceeccccccccceEEEeeEEecCC
Confidence 999999999998621 23788888854 458999999998753
No 14
>TIGR02408 ectoine_ThpD ectoine hydroxylase. Both ectoine and hydroxyectoine are compatible solvents that serve as protectants against osmotic and thermal stresses. A number of genomes synthesize ectoine. This enzyme allows conversion of ectoine to hydroxyectoine, which may be more effective for some purposes, and is found in a subset of ectoine-producing organisms.
Probab=98.14 E-value=5.1e-05 Score=70.06 Aligned_cols=187 Identities=14% Similarity=0.161 Sum_probs=96.6
Q ss_pred EecCCCEEEEcCCCCHHHHHHHHHHhcCcCCCceeEeCCCCC--ccccceeeccceeecCCccHHHH------HHHHHHH
Q 023050 80 ISWEPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGK--SKDSRVRTSSGTFLARGRDKIIR------DIEKRIA 151 (288)
Q Consensus 80 ls~~P~i~vi~nfLs~~EC~~Li~~a~~~~~~s~v~~~~~g~--~~~~~~Rts~~~~l~~~~d~vv~------~i~~ri~ 151 (288)
...+. .++++++|+++||+.|.+..+..+..........+. ......|. .+.....++.++ +|.+.++
T Consensus 25 f~~dG-yvvl~~vls~eev~~lr~~i~~~~~~~~~~~~~~~~~~~~~~~~r~---~~~~~~~~~~~~~l~~~p~l~~~~~ 100 (277)
T TIGR02408 25 YERDG-FLLLENLFSDDEVAALLAEVERMTRDPAIVRDEEAITEPGSNAVRS---IFEVHVLSPILARLVRDPRVANAAR 100 (277)
T ss_pred HHHCC-EEECcccCCHHHHHHHHHHHHHHHhcccccCCCcceecCCCCceEE---EecccccCHHHHHHHcChHHHHHHH
Confidence 33344 469999999999999999887653321110000000 00111221 111111234333 3445566
Q ss_pred hhcCCCCCCCcccEEEecC-CCCcccccccccccccccCCCCceEEEEEEEecCCC-CCceeee-cCCCCCC----CCCC
Q 023050 152 DFTFFPLENGEGLQVLHYE-AGQKYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVE-EGGETVF-PNAQGNI----SAVP 224 (288)
Q Consensus 152 ~~~~~p~~~~E~lqv~rY~-~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLND~~-eGGeT~F-p~~~~~~----s~~~ 224 (288)
+++|-++......-+.+.. .|+.+.||.|+..-.........+.+|+.++|.|+. +.|.+.| |...... ...+
T Consensus 101 ~LlG~~~~l~~~~l~~kp~~~g~~~~WHQD~~~w~~~~~~p~~~~vt~wiaLdD~t~eNG~l~vIPGSH~~~~~~~~~~~ 180 (277)
T TIGR02408 101 QILGSDVYVHQSRINMKPGFKGTGFYWHSDFETWHAEDGMPSMRAVSCSIALTDNNETNGPLMLVPGSHRTFISCVGETP 180 (277)
T ss_pred HHcCCCeEEEeeeeeecCCCCCCCccCCcCCccccccCCCCCcCeEEEEEEcccCCCCCCCEEEecCCCCCcccCCcccc
Confidence 6666543222111123444 356789999964210000011236799999999986 4477766 4432210 0000
Q ss_pred --Cccc--------cccc-------C-CcCeEEeCCCceEEEEecCCCCCCCCCCCcccccccccc-cEEEEEE
Q 023050 225 --WWNE--------LSEC-------G-KTGLSIKPKMGDALLFWSMKPDASLDPSSLHGGCPVIKG-NKWSSTK 279 (288)
Q Consensus 225 --~~~~--------~~~c-------~-~~~l~V~Pk~G~alvF~n~~~~g~~D~~~lH~g~PV~~G-~K~i~~~ 279 (288)
.+++ ..+. . ..-+.+.-++|++|||. ..++|++-|..+. .|+++..
T Consensus 181 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~~~~aGDvl~f~---------~~~~H~S~~N~s~~~R~~l~l 245 (277)
T TIGR02408 181 RDNYKQSLKKQEYGVPDPVSLTKLADQGGISTFTGKAGSAVWFD---------CNTMHGSGSNITPWPRSNVFM 245 (277)
T ss_pred chhhhhhhhhhhcCCCCHHHHHHHHHhCCceeeccCCceEEEEc---------cccccCCCCCCCCCcceeEEE
Confidence 0110 0000 0 11235666999999995 5899999999876 4555543
No 15
>PHA02866 Hypothetical protein; Provisional
Probab=97.99 E-value=3.1e-05 Score=71.26 Aligned_cols=132 Identities=17% Similarity=0.216 Sum_probs=89.3
Q ss_pred cCCCceeEeCCCC-CccccceeeccceeecCCccHHHHHHHHHHHhhcC--CCCCCCcccEEEecCCCCccccccccccc
Q 023050 108 HMRKSTVVDSDTG-KSKDSRVRTSSGTFLARGRDKIIRDIEKRIADFTF--FPLENGEGLQVLHYEAGQKYEPHFDYFMD 184 (288)
Q Consensus 108 ~~~~s~v~~~~~g-~~~~~~~Rts~~~~l~~~~d~vv~~i~~ri~~~~~--~p~~~~E~lqv~rY~~G~~y~~H~D~~~~ 184 (288)
.+.+|.+.+...| .-.....|.|.+. +++..+++ |+-++.. ..+-..+-+.+.+|..|.+|.-|+|....
T Consensus 31 ~w~~s~i~~~~~~i~~~~~~~~k~k~~------~~v~~~v~-~~~~~~~~~~dv~v~~~~t~vk~~kg~~fdn~~~~~~~ 103 (333)
T PHA02866 31 SWEDSDILRHRQFIPCEILVLEKSERT------KQVFGAVK-RVLASSLTDYDVYVCEHLTIVKCFKGVGFDNRFSILTE 103 (333)
T ss_pred ccchhhhhhhccCCceeeeehhhhhhh------HHHHHHHH-HHHhccCCCccEEEeeeEEEEEEecccccccceeEEEe
Confidence 3777777765444 2344556666543 56777766 4444422 22234567999999999999999987542
Q ss_pred ccccCCCCceEEEEEEEecCCCCCceeeecCCCCCCCCCCCcccccccCCcCeEEeCCCceEEEEecCCCCCCCCCCCcc
Q 023050 185 EFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTGLSIKPKMGDALLFWSMKPDASLDPSSLH 264 (288)
Q Consensus 185 ~~~~~~~~~R~~T~liYLND~~eGGeT~Fp~~~~~~s~~~~~~~~~~c~~~~l~V~Pk~G~alvF~n~~~~g~~D~~~lH 264 (288)
.....+-.++++||+.+++||+|.++-... ..++ .+-+ ++| |....|
T Consensus 104 ----~~~~~~~Y~LvLyL~~p~~GGkt~iyv~~~----------------t~i~---~~~D-vLF---------DKsl~h 150 (333)
T PHA02866 104 ----DRHRGREYTLVLHLSSPKNGGKTDVCVGDK----------------TVIS---TADD-FLL---------EKRSEQ 150 (333)
T ss_pred ----ccCCceEEEEEEEEeccccCCceEEEeCCC----------------ceEe---eccc-eee---------eccccc
Confidence 223457789999999999999999984321 1111 1223 556 468999
Q ss_pred cccccccccEEEEEE
Q 023050 265 GGCPVIKGNKWSSTK 279 (288)
Q Consensus 265 ~g~PV~~G~K~i~~~ 279 (288)
+..-|.+|.|.++..
T Consensus 151 ~S~~V~~G~K~Vali 165 (333)
T PHA02866 151 LSNVVQEGEKIVVAV 165 (333)
T ss_pred cceeeecCcEEEEEE
Confidence 999999999987643
No 16
>PF05721 PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro: IPR008775 This family is made up of several eukaryotic phytanoyl-CoA dioxygenase (PhyH) proteins as well as a number of bacterial deoxygenases. PhyH is a peroxisomal enzyme catalysing the first step of phytanic acid alpha-oxidation. PhyH deficiency causes Refsum's disease (RD) which is an inherited neurological syndrome biochemically characterised by the accumulation of phytanic acid in plasma and tissues [].; PDB: 3GJA_A 3EMR_A 3OBZ_A 2OPW_A 3NNL_B 3NNF_A 3NNM_B 3NNJ_A 2FCV_B 2FCU_A ....
Probab=97.79 E-value=0.00017 Score=61.62 Aligned_cols=170 Identities=20% Similarity=0.116 Sum_probs=85.4
Q ss_pred EEEEcCCCCHHHHHHHHHHhcCc----CCC-ceeEeCCCCCccccceeeccceeecCCc---cHHH-H-HHHHHHHhhcC
Q 023050 86 AFVYHNFLSKEECEYLINLATPH----MRK-STVVDSDTGKSKDSRVRTSSGTFLARGR---DKII-R-DIEKRIADFTF 155 (288)
Q Consensus 86 i~vi~nfLs~~EC~~Li~~a~~~----~~~-s~v~~~~~g~~~~~~~Rts~~~~l~~~~---d~vv-~-~i~~ri~~~~~ 155 (288)
.++++|+|+++||+.|.+..+.. ... ........+... . ....++.... +.+. . .+.+.+++++|
T Consensus 6 yvvi~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 80 (211)
T PF05721_consen 6 YVVIRNVLSPEEVERLREELDRLDDRALEPDQDVSDFFDESFF-G----DYTEQLAKSPNFYDLFLHPPRILDLVRALLG 80 (211)
T ss_dssp EEEETTSS-HHHHHHHHHHHHHHHHHHTTTTTSCEEEESTSCC-C----TCCCCGCCCHHHHHHHHTHHHHHHHHHHHHT
T ss_pred EEEECCcCCHHHHHHHHHHHHHHHhhhhccccccccccccccc-c----ccccccccchhhHHHHhhHHHHHHHHHHhhC
Confidence 57899999999999999988753 111 000000001000 0 0001111100 1111 2 46666677766
Q ss_pred CCCC----CCcccE-EEecC-CCCcc-cccccccccccccCCCCceEEEEEEEecCCC-CCceeeecCCCCCCCCCC-Cc
Q 023050 156 FPLE----NGEGLQ-VLHYE-AGQKY-EPHFDYFMDEFNTKNGGQRMATVLMYLSDVE-EGGETVFPNAQGNISAVP-WW 226 (288)
Q Consensus 156 ~p~~----~~E~lq-v~rY~-~G~~y-~~H~D~~~~~~~~~~~~~R~~T~liYLND~~-eGGeT~Fp~~~~~~s~~~-~~ 226 (288)
.... ....++ +.+-. +|... .||.|...-. .....+.+|+.++|.|+. +.|.+.+-...-.....+ .+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~wH~D~~~~~---~~~~~~~~~~wi~L~d~~~~~G~~~v~pGSH~~~~~~~~~ 157 (211)
T PF05721_consen 81 SDVFVQNWLQSMYQDIVKPPGPGAAVQPWHQDAPYWH---TDPPENQLTVWIALDDITPENGPLEVVPGSHKWGVEPHEE 157 (211)
T ss_dssp SSEEEE--EEEEEEEEEE-TTTTC-EEEEBEHHHCST---EESSSCEEEEEEESS-BBTTCTCEEEETTGCCSCCEEECC
T ss_pred CcchhhhhhHHHHHhhhhccccCCCCCCCCCCCcccc---cCCccceEEEEEeeccCCcccCceEeecCCcCCCcccccc
Confidence 5432 112221 23332 46665 9999975421 011578999999999984 556676643211111000 00
Q ss_pred cc-----cc-------ccCCcCeEEeCCCceEEEEecCCCCCCCCCCCcccccccccc
Q 023050 227 NE-----LS-------ECGKTGLSIKPKMGDALLFWSMKPDASLDPSSLHGGCPVIKG 272 (288)
Q Consensus 227 ~~-----~~-------~c~~~~l~V~Pk~G~alvF~n~~~~g~~D~~~lH~g~PV~~G 272 (288)
.. .. ......+.+..++|++|||. ..++|++-|..+.
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gdvl~~~---------~~~~H~s~~N~s~ 206 (211)
T PF05721_consen 158 RFPEEDFPEEDDEESDEDEDEWVPVPMKAGDVLFFH---------SRLIHGSGPNTSD 206 (211)
T ss_dssp CCCCCCCCCCHHHHHHHHCSGCEEE-BSTTEEEEEE---------TTSEEEEE-B-SS
T ss_pred cccccccccccccccccccCceEEeecCCCeEEEEc---------CCccccCCCCCCc
Confidence 00 00 11234578999999999996 5899999997654
No 17
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A.
Probab=97.74 E-value=0.00011 Score=57.59 Aligned_cols=91 Identities=24% Similarity=0.303 Sum_probs=48.3
Q ss_pred EecCCCCcccccccccccccccCCCCceEEEEEEEecCCCCCceeeecCCCCCCCCC-CC-cccccccCCcCeEEeCCCc
Q 023050 167 LHYEAGQKYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAV-PW-WNELSECGKTGLSIKPKMG 244 (288)
Q Consensus 167 ~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLND~~eGGeT~Fp~~~~~~s~~-~~-~~~~~~c~~~~l~V~Pk~G 244 (288)
..|..|++-.+|.= ....++.++||+.+++.|.+.|.+........ +. +.+..........++|+.|
T Consensus 5 ni~~~g~~~~~H~H-----------~~s~~SgVyYv~~p~~~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~G 73 (101)
T PF13759_consen 5 NIYRKGGYNEPHNH-----------PNSWLSGVYYVQVPEGSGPLRFHDPRGSFSFGAPFDNYDQNDLNSPYYIVEPEEG 73 (101)
T ss_dssp EEE-TT--EEEE-------------TT-SEEEEEECE--TTS-SEEEE-TTCCCGTTS----TTTTCCC-SEEEE---TT
T ss_pred EEeCCCCccCceEC-----------CCcCEEEEEEEECCCCCCceeeeCCCccceecccccccccCcccCceEEeCCCCC
Confidence 45678888777732 23579999999998888999997654322111 10 1111112234678999999
Q ss_pred eEEEEecCCCCCCCCCCCcccccccccc-cEEEE
Q 023050 245 DALLFWSMKPDASLDPSSLHGGCPVIKG-NKWSS 277 (288)
Q Consensus 245 ~alvF~n~~~~g~~D~~~lH~g~PV~~G-~K~i~ 277 (288)
++|||++ .+.|++.|-... +|.++
T Consensus 74 ~lvlFPs---------~l~H~v~p~~~~~~Risi 98 (101)
T PF13759_consen 74 DLVLFPS---------WLWHGVPPNNSDEERISI 98 (101)
T ss_dssp EEEEEET---------TSEEEE----SSS-EEEE
T ss_pred EEEEeCC---------CCEEeccCcCCCCCEEEE
Confidence 9999996 799999999875 66665
No 18
>KOG3844 consensus Predicted component of NuA3 histone acetyltransferase complex [Chromatin structure and dynamics]
Probab=97.69 E-value=0.00044 Score=66.09 Aligned_cols=167 Identities=17% Similarity=0.220 Sum_probs=102.3
Q ss_pred cCCCE-EEEcCCCCHHHHHHHHHHhcCc--CCCceeEeCCCCCccccceeeccc---eeecCCc--------cHHHHHHH
Q 023050 82 WEPRA-FVYHNFLSKEECEYLINLATPH--MRKSTVVDSDTGKSKDSRVRTSSG---TFLARGR--------DKIIRDIE 147 (288)
Q Consensus 82 ~~P~i-~vi~nfLs~~EC~~Li~~a~~~--~~~s~v~~~~~g~~~~~~~Rts~~---~~l~~~~--------d~vv~~i~ 147 (288)
..|+- +++++|+++...+.+....+.. +.+- +..-+|..+. +-+..-+ +.+.+...
T Consensus 33 ngPf~h~~i~~~vnd~~l~~vrkei~~~~~f~~k----------~tDlyr~~QtgdL~nl~~le~p~lf~~r~~Lyke~r 102 (476)
T KOG3844|consen 33 NGPFNHFIIRDFVNDSLLRVVRKEIHGSIHFTEK----------ETDLYRVLQTGDLANLEGLEFPALFSFRDSLYKEAR 102 (476)
T ss_pred cCCCcceeeeccCCHHHHHHHHHHHhhccchhhh----------cchhhheeccccccccccccchhHHHHHHHHHHHHH
Confidence 34543 6799999988777777554432 2110 0111221111 1111111 22233344
Q ss_pred HHHHhhcCCCCCCCcccEEEecCCCCcccccccccccccccCCCCceEEEEEEEecCCC----CCceeeecCC-CCCCCC
Q 023050 148 KRIADFTFFPLENGEGLQVLHYEAGQKYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVE----EGGETVFPNA-QGNISA 222 (288)
Q Consensus 148 ~ri~~~~~~p~~~~E~lqv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLND~~----eGGeT~Fp~~-~~~~s~ 222 (288)
.-+.+++|--...--++-+..|..|.+--.|-|-. +.|.+++++||-|.. -||++..... .....
T Consensus 103 ~~~q~vtg~~s~sk~Dms~s~Y~kgd~LL~HDD~i---------etRriaFilYL~~~Dwds~~GG~L~Lf~~d~~~~P- 172 (476)
T KOG3844|consen 103 GEIQDVTGGLSTSKIDMSGSYYRKGDHLLCHDDVI---------ETRRIAFILYLVDPDWDSEYGGELRLFPDDCPSQP- 172 (476)
T ss_pred HHHHhccCccccceeeeceeeeeccceeccccccc---------cceEEEEEEEecCcccccccCceeEecccccccCc-
Confidence 44555564322222367889999999999996643 568999999999875 3888865443 22111
Q ss_pred CCCcccccccCCcCeEEeCCCceEEEEecCCCCCCCCCCCccccccccccc-EEEEEEeeeecc
Q 023050 223 VPWWNELSECGKTGLSIKPKMGDALLFWSMKPDASLDPSSLHGGCPVIKGN-KWSSTKWIRVNE 285 (288)
Q Consensus 223 ~~~~~~~~~c~~~~l~V~Pk~G~alvF~n~~~~g~~D~~~lH~g~PV~~G~-K~i~~~W~~~~~ 285 (288)
..--.++.|+-...++|.- -+-+.|.+..|.+.+ |.++++|+|.+.
T Consensus 173 ----------~s~~asl~P~~Nql~fFeV-------sp~SFH~V~Ev~sde~RlSIsGWfH~p~ 219 (476)
T KOG3844|consen 173 ----------KSVAASLEPQWNQLVFFEV-------SPISFHDVEEVLSDEPRLSISGWFHFPQ 219 (476)
T ss_pred ----------cchhhccCcccceEEEEEe-------cccchhhHHHHhccCcceeEeeeecCCc
Confidence 0112458899999899964 378999999999865 599999999864
No 19
>PF09859 Oxygenase-NA: Oxygenase, catalysing oxidative methylation of damaged DNA; InterPro: IPR018655 This family of various hypothetical prokaryotic proteins, has no known function.
Probab=97.45 E-value=0.00057 Score=58.09 Aligned_cols=102 Identities=22% Similarity=0.267 Sum_probs=72.9
Q ss_pred ccEEEecCCCCcccccccccccccccCCCCceEEEEEEEecCC---CCCceeeecCCCCCCCCCCCcccccccCCcCeEE
Q 023050 163 GLQVLHYEAGQKYEPHFDYFMDEFNTKNGGQRMATVLMYLSDV---EEGGETVFPNAQGNISAVPWWNELSECGKTGLSI 239 (288)
Q Consensus 163 ~lqv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLND~---~eGGeT~Fp~~~~~~s~~~~~~~~~~c~~~~l~V 239 (288)
...+++|++|++-..|.|..-+. -=-+-+++-||++ ++|||.++-.-.... +.....+
T Consensus 63 tplllrY~~gdyn~LHqdlyGe~-------vFPlQvv~lLs~Pg~DftGGEFVltEQrPR~------------QSR~~V~ 123 (173)
T PF09859_consen 63 TPLLLRYGPGDYNCLHQDLYGEH-------VFPLQVVILLSEPGEDFTGGEFVLTEQRPRM------------QSRAMVL 123 (173)
T ss_pred chhhheeCCCCccccccCCCCCc-------ccCeEEEEEcCCCCCcccCceEEEEEecCCc------------cCccccC
Confidence 46789999999999999865321 0124678889985 589999985433221 1146778
Q ss_pred eCCCceEEEEec-CCCC-C-CCC--CCCcccccccccccEEEEEEeeee
Q 023050 240 KPKMGDALLFWS-MKPD-A-SLD--PSSLHGGCPVIKGNKWSSTKWIRV 283 (288)
Q Consensus 240 ~Pk~G~alvF~n-~~~~-g-~~D--~~~lH~g~PV~~G~K~i~~~W~~~ 283 (288)
.+++|+|+||.. .+|- | .++ -...|++.+|.+|+++.+-.=||.
T Consensus 124 ~L~qGda~if~t~~RPv~G~rG~yRv~~RHgVS~vrsG~R~tLgliFHD 172 (173)
T PF09859_consen 124 PLRQGDALIFATNHRPVRGARGYYRVNMRHGVSRVRSGERHTLGLIFHD 172 (173)
T ss_pred CcCCCCEEEEecCCCCcCCCccceecccccccccccccceEEEEEEeec
Confidence 999999999973 3332 2 222 356899999999999999877764
No 20
>TIGR01762 chlorin-enz chlorinating enzymes. This model represents a a group of highly homologous enzymes related to dioxygenases which chlorinate amino acid methyl groups. BarB1 and BarB2 are proposed to trichlorinate one of the methyl groups of a leucine residue in the biosynthesis of barbamide in the cyanobacterium Lyngbya majuscula. SyrB2 is proposed to chlorinate the methyl group of threonine in the biosynthesis of syringomycin in Pseudomonas syringae. CmaB is proposed to chlorinate the beta-methyl group of alloisoleucine in the process of ring closure in the biosynthesis of coronamic acid, a component of coronatine also in Pseudomonas syringae.
Probab=97.41 E-value=0.0095 Score=55.45 Aligned_cols=178 Identities=15% Similarity=0.162 Sum_probs=94.9
Q ss_pred CCEEEEcCCCCHHHHHHHHHHhcCcCC-CceeEeCCCCCccccceeeccceeecCCccHHH------HHHHHHHHhhcCC
Q 023050 84 PRAFVYHNFLSKEECEYLINLATPHMR-KSTVVDSDTGKSKDSRVRTSSGTFLARGRDKII------RDIEKRIADFTFF 156 (288)
Q Consensus 84 P~i~vi~nfLs~~EC~~Li~~a~~~~~-~s~v~~~~~g~~~~~~~Rts~~~~l~~~~d~vv------~~i~~ri~~~~~~ 156 (288)
...+++.++||++|++.|.+.++..+. ++.......+ ...|.+ |-....++.+ .+|.+.+++++|-
T Consensus 14 ~Gyv~~~~~~s~eei~~L~~~~~~~l~~~~~~~~~~~~----~~~~~~---~~~~~~~~~~~~l~~~~~l~~~~~~llG~ 86 (288)
T TIGR01762 14 NGFIGPFTLYSPEEMKETWKRIRLRLLDRSAAPYQDLG----GTNIAN---YDRHLDDDFLASHICRPEICHRVESILGP 86 (288)
T ss_pred CCEEeCcCCCCHHHHHHHHHHHHHHhhccccccccCCC----CceeEe---eeecccCHHHHHHhcCHHHHHHHHHHhCC
Confidence 345689999999999999998864321 1110000001 112222 1111112222 2445556666665
Q ss_pred CCCCCcccEEEecCCCCccccccccccccccc--------CCCCceEEEEEEEecCCC-CCceeee-cCCCCCCC---CC
Q 023050 157 PLENGEGLQVLHYEAGQKYEPHFDYFMDEFNT--------KNGGQRMATVLMYLSDVE-EGGETVF-PNAQGNIS---AV 223 (288)
Q Consensus 157 p~~~~E~lqv~rY~~G~~y~~H~D~~~~~~~~--------~~~~~R~~T~liYLND~~-eGGeT~F-p~~~~~~s---~~ 223 (288)
++-....--+.+...++.+.||.|...-.... .....+.+|+.+.|.|+. +-|.+.| |....... ..
T Consensus 87 ~v~l~~~~~~~K~pg~~~~~wHQD~~y~~~~~~~~~~~p~~~~~~~~vt~wiaLdd~t~eNG~L~viPGSH~~~~~~~~~ 166 (288)
T TIGR01762 87 NVLCWRTEFFPKYPGDEGTDWHQADTFANASGKPQLVWPENEEFGGTITVWTAFTDATIENGCMQFIPGTHNSMNYDETR 166 (288)
T ss_pred cEEeeeceeeeeCCCCCCCCCCccCcccccCCcccccccccCCCCCeEEEEEEcccCCcccCCEEEECCCCCCCCCCccc
Confidence 44322222345555555589999964321100 012247899999999985 5566666 43321100 00
Q ss_pred -----C----------C--------cccc------cccCCcCeEEeCCCceEEEEecCCCCCCCCCCCccccccccccc-
Q 023050 224 -----P----------W--------WNEL------SECGKTGLSIKPKMGDALLFWSMKPDASLDPSSLHGGCPVIKGN- 273 (288)
Q Consensus 224 -----~----------~--------~~~~------~~c~~~~l~V~Pk~G~alvF~n~~~~g~~D~~~lH~g~PV~~G~- 273 (288)
+ . +.++ ..+...-+.+.-++|++++|. ..++|++.|-.+..
T Consensus 167 ~~~~~p~~~~~~~~g~~~~~~~~~~~~~l~~d~~~~~~~~~~v~~~lkaGd~~~f~---------~~t~HgS~~N~S~~~ 237 (288)
T TIGR01762 167 RMTFEPDANNSVVKGGVRRGFFGYDYRQLQIDENWKPDEASAVPMQMKAGQFIIFW---------STLMHASYPNSGESQ 237 (288)
T ss_pred ccccCccccccccccccccccccccchhhcccccCCccccceeeeeeCCceEEEEC---------CCceecCCCCCCCCc
Confidence 0 0 0000 001123467777999999995 58999999998853
Q ss_pred -EEEE
Q 023050 274 -KWSS 277 (288)
Q Consensus 274 -K~i~ 277 (288)
|+++
T Consensus 238 ~R~~~ 242 (288)
T TIGR01762 238 MRMGF 242 (288)
T ss_pred eEEEE
Confidence 5554
No 21
>TIGR02466 conserved hypothetical protein. This family consists of uncharacterized proteins in Caulobacter crescentus CB15, Bdellovibrio bacteriovorus HD100, Synechococcus sp. WH 8102 (2), Silicibacter pomeroyi DSS-3 (2), and Hyphomonas neptunium ATCC 15444. The context of nearby genes differs substantially between members and does point to any specific biological role.
Probab=97.27 E-value=0.0018 Score=57.24 Aligned_cols=95 Identities=19% Similarity=0.172 Sum_probs=62.3
Q ss_pred cEEEecCCCCcccccccccccccccCCCCceEEEEEEEecCCCCCceeeecCCCCC--CCCCCCcccccccCCcCeEEeC
Q 023050 164 LQVLHYEAGQKYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGN--ISAVPWWNELSECGKTGLSIKP 241 (288)
Q Consensus 164 lqv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLND~~eGGeT~Fp~~~~~--~s~~~~~~~~~~c~~~~l~V~P 241 (288)
.=+.++.+|++-..|+= .+..+|-++||+.+..+|...|.+.... .+..+.-..-.......+.|+|
T Consensus 98 ~W~ni~~~Gg~h~~H~H-----------p~~~lSgvyYl~~p~~~g~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~v~P 166 (201)
T TIGR02466 98 AWVNILPQGGTHSPHLH-----------PGSVISGTYYVQTPENCGAIKFEDPRLDDMMAAPMRIPNAKRAVQRFVYVPP 166 (201)
T ss_pred EeEEEcCCCCccCceEC-----------CCceEEEEEEEeCCCCCCceeEecCcchhhhccccccCccccccCccEEECC
Confidence 33577888988777742 2357999999999888899988643211 0000000000011123567999
Q ss_pred CCceEEEEecCCCCCCCCCCCccccccccc-ccEEEEE
Q 023050 242 KMGDALLFWSMKPDASLDPSSLHGGCPVIK-GNKWSST 278 (288)
Q Consensus 242 k~G~alvF~n~~~~g~~D~~~lH~g~PV~~-G~K~i~~ 278 (288)
+.|++|+|+| .+.|++.|-.. ++|.++.
T Consensus 167 ~~G~lvlFPS---------~L~H~v~p~~~~~~RISiS 195 (201)
T TIGR02466 167 QEGRVLLFES---------WLRHEVPPNESEEERISVS 195 (201)
T ss_pred CCCeEEEECC---------CCceecCCCCCCCCEEEEE
Confidence 9999999997 79999999875 4676653
No 22
>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A ....
Probab=96.68 E-value=0.011 Score=51.06 Aligned_cols=153 Identities=22% Similarity=0.194 Sum_probs=75.9
Q ss_pred EEEEcCCCCHHHHHHHHHHhcCc--CCCceeEeCCCCCccc---------------cceeeccc-----eeecCCccHHH
Q 023050 86 AFVYHNFLSKEECEYLINLATPH--MRKSTVVDSDTGKSKD---------------SRVRTSSG-----TFLARGRDKII 143 (288)
Q Consensus 86 i~vi~nfLs~~EC~~Li~~a~~~--~~~s~v~~~~~g~~~~---------------~~~Rts~~-----~~l~~~~d~vv 143 (288)
+++++||||++|.++|++..... +...+... ++... ..++-+.. .-++. -.+.+
T Consensus 2 ~~~~~~fls~~e~~~l~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~y~y~~~~~~~~~~~~~-~p~~l 77 (194)
T PF13532_consen 2 LYYIPNFLSEEEAAELLNELRESAPFRQPTYPM---GKVYSLPRKLCGGLSWVGDGPSYRYSGKRPVRSKPWPP-FPEWL 77 (194)
T ss_dssp EEEETTSS-HHHHHHHHHHHHHHS--B-GCCCC---CCECCECCE-SSEEEEEECT--CCCTCC-EECCCEBSC-CHHHH
T ss_pred EEEECCCCCHHHHHHHHHHHHhhCCCcCCeEcC---CCEEccceecceeeEEECCCCCeEcCCccccCCCCCCC-ccHHH
Confidence 67999999999999999998732 11111100 11000 01111110 00111 12345
Q ss_pred HHHHHHHHhhcC-CCCCCCcccEEEecCCCCcccccccccccccccCCCCceEEEEEEEecCCCCCceeeecCCCCCCCC
Q 023050 144 RDIEKRIADFTF-FPLENGEGLQVLHYEAGQKYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNISA 222 (288)
Q Consensus 144 ~~i~~ri~~~~~-~p~~~~E~lqv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLND~~eGGeT~Fp~~~~~~s~ 222 (288)
..+.+++....+ .+........|..|..|+.-.+|.|.... ..+..++|+-+ |+..+|-.....
T Consensus 78 ~~~~~~~~~~~~~~~~~~~n~~liN~Y~~g~~i~~H~D~~~~-----~~~~~I~slSL-------G~~~~~~f~~~~--- 142 (194)
T PF13532_consen 78 SRLLERLVEATGIPPGWRPNQCLINYYRDGSGIGPHSDDEEY-----GFGPPIASLSL-------GSSRVFRFRNKS--- 142 (194)
T ss_dssp HHHHHHHHHHHT-SHSS--SEEEEEEESSTT-EEEE---TTC------CCSEEEEEEE-------ES-EEEEEEECG---
T ss_pred HHHHHHHHHHhccccCCCCCEEEEEecCCCCCcCCCCCcccc-----cCCCcEEEEEE-------ccCceEEEeecc---
Confidence 555555555443 22222346778899999999999997621 23567777665 444444322110
Q ss_pred CCCcccccccCCcCeEEeCCCceEEEEecCCCCCCCCCCCcccccccccc
Q 023050 223 VPWWNELSECGKTGLSIKPKMGDALLFWSMKPDASLDPSSLHGGCPVIKG 272 (288)
Q Consensus 223 ~~~~~~~~~c~~~~l~V~Pk~G~alvF~n~~~~g~~D~~~lH~g~PV~~G 272 (288)
-.+.-+.|.-..|+++++.. ...... |++.|+..+
T Consensus 143 ---------~~~~~~~~~L~~gsl~vm~g-----~~r~~~-H~I~~~~~~ 177 (194)
T PF13532_consen 143 ---------DDDEPIEVPLPPGSLLVMSG-----EARYDW-HGIPPVKKD 177 (194)
T ss_dssp ---------GTS-EEEEEE-TTEEEEEET-----THHHHE-EEE-S-SCE
T ss_pred ---------CCCccEEEEcCCCCEEEeCh-----HHhhhe-eEcccccCC
Confidence 01235788999999999963 222344 999999874
No 23
>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional
Probab=96.59 E-value=0.1 Score=46.58 Aligned_cols=159 Identities=19% Similarity=0.195 Sum_probs=91.7
Q ss_pred cCCCEEEEcCCCCHHHHHHHHHHhcCcCCCceeEeCCC-CCccccceee-ccc--eeecC-------------C-----c
Q 023050 82 WEPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDT-GKSKDSRVRT-SSG--TFLAR-------------G-----R 139 (288)
Q Consensus 82 ~~P~i~vi~nfLs~~EC~~Li~~a~~~~~~s~v~~~~~-g~~~~~~~Rt-s~~--~~l~~-------------~-----~ 139 (288)
..|.++++++|. .+|.+.|++..+.....+......+ |+ ..-++|. |-+ .|+.+ . -
T Consensus 16 ~~~g~~~~~~~~-~~~~~~l~~~~~~~~~~~p~~~~~~~gg-~~msv~mt~~G~~~W~~d~~~YrYs~~~~~~~~pwp~~ 93 (213)
T PRK15401 16 LAPGAVLLRGFA-LAAAEALLAAIEAVAAQAPFRHMVTPGG-YTMSVAMTNCGALGWVTDRRGYRYSPIDPLTGKPWPAM 93 (213)
T ss_pred cCCCcEEeCCCC-HHHHHHHHHHHHHHHhcCCccceecCCC-CcceeEEeccccceEecCCCCcccCCcCCCCCCCCCCc
Confidence 578899999995 8888888877765211111111111 11 1112221 111 22210 0 0
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCcccEEEecCCCCcccccccccccccccCCCCceEEEEEEEecCCCCCceeeecCCCCC
Q 023050 140 DKIIRDIEKRIADFTFFPLENGEGLQVLHYEAGQKYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGN 219 (288)
Q Consensus 140 d~vv~~i~~ri~~~~~~p~~~~E~lqv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLND~~eGGeT~Fp~~~~~ 219 (288)
.+.+..|.++++...+.+....+..-|..|.+|+.-++|.|....+ ...-++++-+ |.+-.|......
T Consensus 94 P~~l~~L~~~~~~~~~~~~~~p~a~LvN~Y~~G~~mg~H~D~~E~~-----~~~pI~SvSL-------G~~~~F~~~~~~ 161 (213)
T PRK15401 94 PASFLALAQRAAAAAGFPGFQPDACLINRYAPGAKLSLHQDKDERD-----FRAPIVSVSL-------GLPAVFQFGGLK 161 (213)
T ss_pred hHHHHHHHHHHHHHcCCCCCCCCEEEEEeccCcCccccccCCCccc-----CCCCEEEEeC-------CCCeEEEecccC
Confidence 1257888888888777643344578899999999999999963211 1233455443 555555432110
Q ss_pred CCCCCCcccccccCCcCeEEeCCCceEEEEecCCCCCCCCCCCcccccccccc
Q 023050 220 ISAVPWWNELSECGKTGLSIKPKMGDALLFWSMKPDASLDPSSLHGGCPVIKG 272 (288)
Q Consensus 220 ~s~~~~~~~~~~c~~~~l~V~Pk~G~alvF~n~~~~g~~D~~~lH~g~PV~~G 272 (288)
. .....+|.-.-|++||+-. . ....+|++-++..|
T Consensus 162 ~------------~~~~~~l~L~~Gdllvm~G-----~-sr~~~HgVp~~~~~ 196 (213)
T PRK15401 162 R------------SDPLQRILLEHGDVVVWGG-----P-SRLRYHGILPLKAG 196 (213)
T ss_pred C------------CCceEEEEeCCCCEEEECc-----h-HhheeccCCcCCCC
Confidence 0 1124689999999999942 2 23467999888765
No 24
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro []. Interestingly TET2 is considered as an oncogene, as it is found mutated in some types of cancer []. This entry represents the double-stranded beta helix (DSBH) fold of the 2-oxoglutarate (2OG) - Fe(II) oxygenases. DSBH comprises a part of the catalytic domain in TETS. It is found in many organisms including fruit fly, African malaria mosquito, zebrafish, mouse and human.
Probab=96.26 E-value=0.019 Score=49.53 Aligned_cols=79 Identities=25% Similarity=0.296 Sum_probs=58.7
Q ss_pred cccccccccccccccCCCCceEEEEEEEecC-CCCCceeeecCCCCCCCCCCCcccccccCCcCeEEeCCCceEEEEecC
Q 023050 174 KYEPHFDYFMDEFNTKNGGQRMATVLMYLSD-VEEGGETVFPNAQGNISAVPWWNELSECGKTGLSIKPKMGDALLFWSM 252 (288)
Q Consensus 174 ~y~~H~D~~~~~~~~~~~~~R~~T~liYLND-~~eGGeT~Fp~~~~~~s~~~~~~~~~~c~~~~l~V~Pk~G~alvF~n~ 252 (288)
....|.|... .+--+++++-|.- +++||..++|..+.+ -.|++|.|..|++|+|-.
T Consensus 86 ~t~~HrD~~~--------~~~~~~~~~t~~~gd~~~g~l~lp~~~~~--------------~~g~~~~~~~GtVl~~~~- 142 (171)
T PF12851_consen 86 CTHSHRDTHN--------MPNGYDVLCTLGRGDYDGGRLELPGLDPN--------------ILGVAFAYQPGTVLIFCA- 142 (171)
T ss_pred CccceecCCC--------CCCCeEEEEecCCccccCceEeccccccc--------------cCCEEEecCCCcEEEEcc-
Confidence 3456777542 2233666666643 378999999973322 258999999999999965
Q ss_pred CCCCCCCCCCccccccccc-----ccEEEEEEeee
Q 023050 253 KPDASLDPSSLHGGCPVIK-----GNKWSSTKWIR 282 (288)
Q Consensus 253 ~~~g~~D~~~lH~g~PV~~-----G~K~i~~~W~~ 282 (288)
....|+..||.. |+|+.+.-+.|
T Consensus 143 -------~~~~Hgvtpv~~~~~~~~~R~slvfy~h 170 (171)
T PF12851_consen 143 -------KRELHGVTPVESPNRNHGTRISLVFYQH 170 (171)
T ss_pred -------cceeeecCcccCCCCCCCeEEEEEEEeE
Confidence 468999999997 99999988776
No 25
>PHA02923 hypothetical protein; Provisional
Probab=94.65 E-value=0.24 Score=46.14 Aligned_cols=98 Identities=14% Similarity=0.163 Sum_probs=67.1
Q ss_pred cHHHHHHHHHHHhhcCCC--CCCCcccEEEecCCCCcccccccccccccccCCCCceEEEEEEEecCCCCCceeeecCCC
Q 023050 140 DKIIRDIEKRIADFTFFP--LENGEGLQVLHYEAGQKYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQ 217 (288)
Q Consensus 140 d~vv~~i~~ri~~~~~~p--~~~~E~lqv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLND~~eGGeT~Fp~~~ 217 (288)
+.+..+|++.|-+-+-.. +.....+.+..|++|.+ .|. . ....-..+++||+.+++||++.|+..+
T Consensus 43 ~di~~~ir~liy~elk~v~~V~V~n~iT~ikYekgd~--~~l---------~-~~~~~y~LvLyL~~p~~GGt~i~~~~~ 110 (315)
T PHA02923 43 IDISECIREILYKQFKNVRNIEVSSTISFIKYNPFND--TTL---------T-DDNMGYYLVIYLNRPKSGKTLIYPTPE 110 (315)
T ss_pred hHHHHHHHHHHHHhccCcceEEEeceEEEEEEcCCCc--cee---------e-cCceEEEEEEEEeccCCCCeEEEecCC
Confidence 557777777665433221 22334688999999995 111 0 122678899999999999999998753
Q ss_pred CCCCCCCCcccccccCCcCeEEeCCCceEEEEecCCCCCCCCCCCcccccccccccEEEEEE
Q 023050 218 GNISAVPWWNELSECGKTGLSIKPKMGDALLFWSMKPDASLDPSSLHGGCPVIKGNKWSSTK 279 (288)
Q Consensus 218 ~~~s~~~~~~~~~~c~~~~l~V~Pk~G~alvF~n~~~~g~~D~~~lH~g~PV~~G~K~i~~~ 279 (288)
. .++ .+-+ ++| |....|+..-|.+|.|.+|-.
T Consensus 111 t-----------------~i~---~~~D-vLF---------dKsl~h~s~~V~~G~K~VAl~ 142 (315)
T PHA02923 111 T-----------------VIT---SSED-IMF---------SKSLNFRFENVKRGYKLVMCS 142 (315)
T ss_pred C-----------------eEe---eccc-eee---------ecccccceeeeecCcEEEEEE
Confidence 2 111 1223 556 468999999999999998765
No 26
>KOG3200 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.16 E-value=0.17 Score=43.81 Aligned_cols=96 Identities=16% Similarity=0.217 Sum_probs=57.8
Q ss_pred EEecCCCEEEEcCCCCHHHHHHHHHHhcCcCCCcee--EeC----CCCCccccceeeccceeecCCccHHHHHHHHHHHh
Q 023050 79 VISWEPRAFVYHNFLSKEECEYLINLATPHMRKSTV--VDS----DTGKSKDSRVRTSSGTFLARGRDKIIRDIEKRIAD 152 (288)
Q Consensus 79 ~ls~~P~i~vi~nfLs~~EC~~Li~~a~~~~~~s~v--~~~----~~g~~~~~~~Rts~~~~l~~~~d~vv~~i~~ri~~ 152 (288)
++...|.+++|+||+++||-..+.+-.+..-++ .+ ..+ .-|+... ....++..-.+-.+.+...|.+
T Consensus 7 ~V~~~pt~~YIPnfIt~EEe~~~lshIe~ap~p-kW~~L~NRRLqNyGGvvh------~~glipeelP~wLq~~v~kinn 79 (224)
T KOG3200|consen 7 IVKSAPTMIYIPNFITEEEENLYLSHIENAPQP-KWRVLANRRLQNYGGVVH------KTGLIPEELPPWLQYYVDKINN 79 (224)
T ss_pred EecccceEEEcCCccChHHHHHHHHHHhcCCCc-hhHHHHhhhhhhcCCccc------cCCcCccccCHHHHHHHHHhhc
Confidence 345688999999999999999998888743211 11 000 0011100 0012332223445666677775
Q ss_pred hcCCCCCCCcccEEEecCCCCccccccccc
Q 023050 153 FTFFPLENGEGLQVLHYEAGQKYEPHFDYF 182 (288)
Q Consensus 153 ~~~~p~~~~E~lqv~rY~~G~~y~~H~D~~ 182 (288)
+.-++- .....-|..|.+||.--||.|+.
T Consensus 80 lglF~s-~~NHVLVNeY~pgqGImPHtDGP 108 (224)
T KOG3200|consen 80 LGLFKS-PANHVLVNEYLPGQGIMPHTDGP 108 (224)
T ss_pred ccccCC-CcceeEeecccCCCCcCcCCCCC
Confidence 433332 33467788999999999999974
No 27
>COG3826 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.79 E-value=0.9 Score=39.66 Aligned_cols=103 Identities=18% Similarity=0.213 Sum_probs=70.2
Q ss_pred cccEEEecCCCCcccccccccccccccCCCCceEEEEEEEecCC---CCCceeeecCCCCCCCCCCCcccccccCCcCeE
Q 023050 162 EGLQVLHYEAGQKYEPHFDYFMDEFNTKNGGQRMATVLMYLSDV---EEGGETVFPNAQGNISAVPWWNELSECGKTGLS 238 (288)
Q Consensus 162 E~lqv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLND~---~eGGeT~Fp~~~~~~s~~~~~~~~~~c~~~~l~ 238 (288)
.-.-++.|.+|.+--.|.|-.-+- -=-+-+.|-|+|+ +.|||.+.-...... +..+-.
T Consensus 124 pTpLlLqYgpgD~NcLHQDLYGel-------vFPLQvailLsePg~DfTGGEF~lvEQRPR~------------QSr~~v 184 (236)
T COG3826 124 PTPLLLQYGPGDYNCLHQDLYGEL-------VFPLQVAILLSEPGTDFTGGEFVLVEQRPRM------------QSRPTV 184 (236)
T ss_pred CCceeEEecCCccchhhhhhhhce-------eeeeeEEEeccCCCCcccCceEEEEeccccc------------ccCCce
Confidence 346789999999999999964221 1124567778987 489998875432211 113556
Q ss_pred EeCCCceEEEEecC-CC-C---CCCCCCCcccccccccccEEEEEEeeee
Q 023050 239 IKPKMGDALLFWSM-KP-D---ASLDPSSLHGGCPVIKGNKWSSTKWIRV 283 (288)
Q Consensus 239 V~Pk~G~alvF~n~-~~-~---g~~D~~~lH~g~PV~~G~K~i~~~W~~~ 283 (288)
|.-.+|++++|-.. .| + |.--....|++.-+.+|+++.+-.=||.
T Consensus 185 vpLrqG~g~vFavr~RPv~gtrG~~r~~lRHGvS~lRSG~R~t~GiIFHD 234 (236)
T COG3826 185 VPLRQGDGVVFAVRDRPVQGTRGWYRVPLRHGVSRLRSGERHTVGIIFHD 234 (236)
T ss_pred eeccCCceEEEEeecCcccCccCccccchhcchhhhhcccceeeEEEeec
Confidence 88889999999632 11 1 2222356899999999999998877764
No 28
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=90.24 E-value=3.7 Score=39.15 Aligned_cols=87 Identities=20% Similarity=0.216 Sum_probs=54.2
Q ss_pred ccEEEecCCCC------cccccccccccccccCCCCceEEEEEEEecCCCCCceeeecCCCCCCCCCCCcccccccCCcC
Q 023050 163 GLQVLHYEAGQ------KYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTG 236 (288)
Q Consensus 163 ~lqv~rY~~G~------~y~~H~D~~~~~~~~~~~~~R~~T~liYLND~~eGGeT~Fp~~~~~~s~~~~~~~~~~c~~~~ 236 (288)
.+++.+|.+.. ...+|.|+. .+|+|+. ++ .||==+..+ ...
T Consensus 201 ~lRl~~YPp~~~~~~~~g~~aHTD~g------------~lTlL~Q-d~--v~GLQV~~~------------------g~W 247 (341)
T PLN02984 201 VIRVYRYPQCSNEAEAPGMEVHTDSS------------VISILNQ-DE--VGGLEVMKD------------------GEW 247 (341)
T ss_pred eEEEEeCCCCCCcccccCccCccCCC------------ceEEEEe-CC--CCCeeEeeC------------------Cce
Confidence 59999998632 245788864 4777755 33 355333321 147
Q ss_pred eEEeCCCceEEEEec----CCCCCCCCCCCcccc-cccccccEEEEEEeeee
Q 023050 237 LSIKPKMGDALLFWS----MKPDASLDPSSLHGG-CPVIKGNKWSSTKWIRV 283 (288)
Q Consensus 237 l~V~Pk~G~alvF~n----~~~~g~~D~~~lH~g-~PV~~G~K~i~~~W~~~ 283 (288)
+.|.|..|.+||--- .+-||. -..+.|++ .+-....||++.-+++-
T Consensus 248 v~V~p~pgalVVNiGD~Le~wTNg~-~kSt~HRVv~~~~~~~R~Sia~F~~P 298 (341)
T PLN02984 248 FNVKPIANTLVVNLGDMMQVISDDE-YKSVLHRVGKRNKKKERYSICYFVFP 298 (341)
T ss_pred EECCCCCCeEEEECChhhhhhcCCe-eeCCCCccccCCCCCCeEEEEEEecC
Confidence 889999999888631 112221 24689999 34335579998877653
No 29
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=88.97 E-value=4.6 Score=37.03 Aligned_cols=109 Identities=16% Similarity=0.169 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHhhcCCCCC--------CCcccEEEecCCC------CcccccccccccccccCCCCceEEEEEEEecCCC
Q 023050 141 KIIRDIEKRIADFTFFPLE--------NGEGLQVLHYEAG------QKYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVE 206 (288)
Q Consensus 141 ~vv~~i~~ri~~~~~~p~~--------~~E~lqv~rY~~G------~~y~~H~D~~~~~~~~~~~~~R~~T~liYLND~~ 206 (288)
.+..+|.+.++..+|++.+ ....+++.+|.+- -...+|.|+. .+|+|+. +++
T Consensus 87 ~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~lrl~~YP~~~~~~~~~g~~~HtD~g------------~lTlL~q-d~v- 152 (262)
T PLN03001 87 ALAQKLLAFISESLGLPCSCIEDAVGDFYQNITVSYYPPCPQPELTLGLQSHSDFG------------AITLLIQ-DDV- 152 (262)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHhcCcchhheeecCCCCCCcccccCCcCCcCCC------------eeEEEEe-CCC-
Confidence 3455556666666676521 1234788999762 1246788863 5777755 333
Q ss_pred CCceeeecCCCCCCCCCCCcccccccCCcCeEEeCCCceEEEEec----CCCCCCCCCCCcccccccccccEEEEEEeee
Q 023050 207 EGGETVFPNAQGNISAVPWWNELSECGKTGLSIKPKMGDALLFWS----MKPDASLDPSSLHGGCPVIKGNKWSSTKWIR 282 (288)
Q Consensus 207 eGGeT~Fp~~~~~~s~~~~~~~~~~c~~~~l~V~Pk~G~alvF~n----~~~~g~~D~~~lH~g~PV~~G~K~i~~~W~~ 282 (288)
||==+..+ ...+.|+|..|..||--- ..-|| .-..+.|++.-....+||++..+++
T Consensus 153 -~GLqV~~~------------------g~Wi~V~p~p~a~vVNiGD~l~~~tng-~~~S~~HRVv~~~~~~R~Sia~F~~ 212 (262)
T PLN03001 153 -EGLQLLKD------------------AEWLMVPPISDAILIIIADQTEIITNG-NYKSAQHRAIANANKARLSVATFHD 212 (262)
T ss_pred -CceEEeeC------------------CeEEECCCCCCcEEEEccHHHHHHhCC-ccccccceEEcCCCCCEEEEEEEEc
Confidence 55333321 147899999998777521 11122 1246899998655567999988765
Q ss_pred e
Q 023050 283 V 283 (288)
Q Consensus 283 ~ 283 (288)
-
T Consensus 213 p 213 (262)
T PLN03001 213 P 213 (262)
T ss_pred C
Confidence 3
No 30
>PF06822 DUF1235: Protein of unknown function (DUF1235); InterPro: IPR009641 This family contains a number of poxviral proteins, which include Vaccinia virus, A37, the function of which is unknown.
Probab=86.42 E-value=6.5 Score=36.20 Aligned_cols=107 Identities=22% Similarity=0.323 Sum_probs=78.4
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCcccEEEecCCCCcccc-cccccccccccCCCCceEEEEEEEecCCCCCceeeecCCCC
Q 023050 140 DKIIRDIEKRIADFTFFPLENGEGLQVLHYEAGQKYEP-HFDYFMDEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQG 218 (288)
Q Consensus 140 d~vv~~i~~ri~~~~~~p~~~~E~lqv~rY~~G~~y~~-H~D~~~~~~~~~~~~~R~~T~liYLND~~eGGeT~Fp~~~~ 218 (288)
..++..|++.+.+ ++-..+.+++..|+.||-++. +.+ .....++++-|+....||..++.....
T Consensus 32 ~~i~~EI~kh~~e----~V~~~~~i~i~~f~~~~~~~~~~~~-----------~~~~sr~lvCi~sakkGG~iii~~~~~ 96 (266)
T PF06822_consen 32 KIILSEIEKHINE----PVYVNNLISIQVFDKGQCYKSRIQD-----------NSSLSRILVCIQSAKKGGCIIIRNTIS 96 (266)
T ss_pred HHHHHHHHHhcCC----eEEecCcEEEEEEeCCCceeccccC-----------CCcceeEEEEeeccccCCeEEEeeccc
Confidence 3566677776643 333456899999999998753 322 235778999999999999998876532
Q ss_pred CCCCCCCcccccccCCcCeEEeCCCceEEEEecCCCCCCCCCCCcccccccccccEEEEEEeeeecc
Q 023050 219 NISAVPWWNELSECGKTGLSIKPKMGDALLFWSMKPDASLDPSSLHGGCPVIKGNKWSSTKWIRVNE 285 (288)
Q Consensus 219 ~~s~~~~~~~~~~c~~~~l~V~Pk~G~alvF~n~~~~g~~D~~~lH~g~PV~~G~K~i~~~W~~~~~ 285 (288)
+ ..-.++|..|.||+-. |..-..+.+|.+|.-..+..=+..+.
T Consensus 97 ~---------------~kkii~~~~~~aVlLs---------pl~~y~Vs~V~~G~~i~i~l~idIPS 139 (266)
T PF06822_consen 97 N---------------DKKIITPNQNMAVLLS---------PLADYDVSNVTKGSMIIIVLDIDIPS 139 (266)
T ss_pred C---------------CceEEecCCCeEEEec---------chhheEEEEecCCcEEEEEEEeccCc
Confidence 2 3568999999999985 57788899999998777766555443
No 31
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=86.15 E-value=9.6 Score=36.14 Aligned_cols=89 Identities=16% Similarity=0.169 Sum_probs=54.8
Q ss_pred cccEEEecCCCC------cccccccccccccccCCCCceEEEEEEEecCCCCCceeeecCCCCCCCCCCCcccccccCCc
Q 023050 162 EGLQVLHYEAGQ------KYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKT 235 (288)
Q Consensus 162 E~lqv~rY~~G~------~y~~H~D~~~~~~~~~~~~~R~~T~liYLND~~eGGeT~Fp~~~~~~s~~~~~~~~~~c~~~ 235 (288)
..+++.+|.+-. ...+|.|+. .+|+|+- |...||==++.+ .+
T Consensus 190 ~~lrl~~YP~~~~~~~~~g~~~HTD~g------------~lTlL~q--d~~v~GLQV~~~------------------g~ 237 (337)
T PLN02639 190 QHMAVNYYPPCPEPELTYGLPAHTDPN------------ALTILLQ--DQQVAGLQVLKD------------------GK 237 (337)
T ss_pred cEEEEEcCCCCCCcccccCCCCCcCCC------------ceEEEEe--cCCcCceEeecC------------------Ce
Confidence 358889998632 245787763 4677643 433455434331 14
Q ss_pred CeEEeCCCceEEEEec----CCCCCCCCCCCcccccccccccEEEEEEeeee
Q 023050 236 GLSIKPKMGDALLFWS----MKPDASLDPSSLHGGCPVIKGNKWSSTKWIRV 283 (288)
Q Consensus 236 ~l~V~Pk~G~alvF~n----~~~~g~~D~~~lH~g~PV~~G~K~i~~~W~~~ 283 (288)
.+.|+|..|.+||--- ..-|| .-..++|++-.....+||++.-+++-
T Consensus 238 Wi~V~p~pg~lVVNiGD~L~~~TNG-~~kSt~HRVv~~~~~~R~Sia~F~~p 288 (337)
T PLN02639 238 WVAVNPHPGAFVINIGDQLQALSNG-RYKSVWHRAVVNTDKERMSVASFLCP 288 (337)
T ss_pred EEeccCCCCeEEEechhHHHHHhCC-eeeccCcccccCCCCCEEEEEEEecC
Confidence 7899999999888521 11122 12468999954445689999887763
No 32
>PLN02904 oxidoreductase
Probab=85.79 E-value=9.8 Score=36.48 Aligned_cols=87 Identities=16% Similarity=0.136 Sum_probs=54.3
Q ss_pred ccEEEecCCC------CcccccccccccccccCCCCceEEEEEEEecCCCCCceeeecCCCCCCCCCCCcccccccCCcC
Q 023050 163 GLQVLHYEAG------QKYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTG 236 (288)
Q Consensus 163 ~lqv~rY~~G------~~y~~H~D~~~~~~~~~~~~~R~~T~liYLND~~eGGeT~Fp~~~~~~s~~~~~~~~~~c~~~~ 236 (288)
.+++.+|.+. -.-.+|.|+. .+|+|+ .|+ ||==+.... ...
T Consensus 209 ~lrl~~YPp~p~~~~~~g~~~HtD~g------------~lTlL~--qd~--~GLQV~~~~-----------------g~W 255 (357)
T PLN02904 209 VMAVNCYPACPEPEIALGMPPHSDFG------------SLTILL--QSS--QGLQIMDCN-----------------KNW 255 (357)
T ss_pred EEEeeecCCCCCcccccCCcCccCCC------------ceEEEe--cCC--CeeeEEeCC-----------------CCE
Confidence 5888999863 1245788864 578885 453 443333321 147
Q ss_pred eEEeCCCceEEEEec----CCCCCCCCCCCcccccccccccEEEEEEeeee
Q 023050 237 LSIKPKMGDALLFWS----MKPDASLDPSSLHGGCPVIKGNKWSSTKWIRV 283 (288)
Q Consensus 237 l~V~Pk~G~alvF~n----~~~~g~~D~~~lH~g~PV~~G~K~i~~~W~~~ 283 (288)
+.|+|..|..||--- ..-|| .-..++|++-.....+||++.-++.-
T Consensus 256 i~V~p~pgalVVNiGD~Le~~TNG-~~kSt~HRVv~~~~~~R~Si~~F~~p 305 (357)
T PLN02904 256 VCVPYIEGALIVQLGDQVEVMSNG-IYKSVVHRVTVNKDYKRLSFASLHSL 305 (357)
T ss_pred EECCCCCCeEEEEccHHHHHHhCC-eeeccCCcccCCCCCCEEEEEEeecC
Confidence 899999999887531 01112 12578999964445689999887653
No 33
>COG3145 AlkB Alkylated DNA repair protein [DNA replication, recombination, and repair]
Probab=85.18 E-value=16 Score=32.18 Aligned_cols=100 Identities=18% Similarity=0.206 Sum_probs=60.2
Q ss_pred eeeccceeecCCccHHHHHHHHHHHhhcCCCCCCCcccEEEecCCCCcccccccccccccccCCCCceEEEEEEEecCCC
Q 023050 127 VRTSSGTFLARGRDKIIRDIEKRIADFTFFPLENGEGLQVLHYEAGQKYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVE 206 (288)
Q Consensus 127 ~Rts~~~~l~~~~d~vv~~i~~ri~~~~~~p~~~~E~lqv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLND~~ 206 (288)
+|.+....+.....+..-.+...+....|.+....|..-+..|.+|+.-.+|.|-.... ...-++++-+
T Consensus 71 y~y~~~~p~~~~p~p~l~~~~~~~~~~~g~~~~~~ea~Lvn~Y~pGd~ig~HqD~~e~~-----~~~~v~slSL------ 139 (194)
T COG3145 71 YRYSLRSPLTGKPWPPLLALFHDLFGAAGYPFEGPEAVLVNRYRPGASIGWHQDKDEED-----DRPPVASLSL------ 139 (194)
T ss_pred ccccccccCCCCCCCccHHHHHHHHHHhcCCCCChhheeEEeccCCCcccccccccccc-----CCCceEEEec------
Confidence 44444443333222344456666666788887777889999999999999999964321 1112344332
Q ss_pred CCceeeecCCCCCCCCCCCcccccccCCcCeEEeCCCceEEEEe
Q 023050 207 EGGETVFPNAQGNISAVPWWNELSECGKTGLSIKPKMGDALLFW 250 (288)
Q Consensus 207 eGGeT~Fp~~~~~~s~~~~~~~~~~c~~~~l~V~Pk~G~alvF~ 250 (288)
|....|-..... . .+...++.-..|++|++-
T Consensus 140 -g~~~~F~~~~~~-----------r-~~~~~~~~L~~Gdvvvm~ 170 (194)
T COG3145 140 -GAPCIFRLRGRR-----------R-RGPGLRLRLEHGDVVVMG 170 (194)
T ss_pred -CCCeEEEecccc-----------C-CCCceeEEecCCCEEEec
Confidence 333344322110 0 124688999999999995
No 34
>PLN02485 oxidoreductase
Probab=84.92 E-value=9.4 Score=35.98 Aligned_cols=89 Identities=13% Similarity=0.063 Sum_probs=55.0
Q ss_pred ccEEEecCCCC----------cccccccccccccccCCCCceEEEEEEEecCCCCCceeeecCCCCCCCCCCCccccccc
Q 023050 163 GLQVLHYEAGQ----------KYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSEC 232 (288)
Q Consensus 163 ~lqv~rY~~G~----------~y~~H~D~~~~~~~~~~~~~R~~T~liYLND~~eGGeT~Fp~~~~~~s~~~~~~~~~~c 232 (288)
.+++++|.+.. .-.+|.|+. .+|+|. .|...||-=+....
T Consensus 185 ~lrl~~YP~~~~~~~~~~~~~g~~~HTD~g------------~lTlL~--qd~~~~GLqV~~~~---------------- 234 (329)
T PLN02485 185 VMRIIGYPGVSNLNGPPENDIGCGAHTDYG------------LLTLVN--QDDDITALQVRNLS---------------- 234 (329)
T ss_pred eEEEEeCCCCccccCCcccCcccccccCCC------------eEEEEe--ccCCCCeeeEEcCC----------------
Confidence 48899998642 135687763 466663 44334554444321
Q ss_pred CCcCeEEeCCCceEEEEec----CCCCCCCCCCCcccccccccccEEEEEEeeee
Q 023050 233 GKTGLSIKPKMGDALLFWS----MKPDASLDPSSLHGGCPVIKGNKWSSTKWIRV 283 (288)
Q Consensus 233 ~~~~l~V~Pk~G~alvF~n----~~~~g~~D~~~lH~g~PV~~G~K~i~~~W~~~ 283 (288)
...+.|+|..|.+||--- ..-|| .=..++|++.+....+||++.-+++-
T Consensus 235 -g~Wi~V~p~pg~~vVNiGD~L~~~TnG-~~~St~HRVv~~~~~~R~Si~~F~~p 287 (329)
T PLN02485 235 -GEWIWAIPIPGTFVCNIGDMLKIWSNG-VYQSTLHRVINNSPKYRVCVAFFYET 287 (329)
T ss_pred -CcEEECCCCCCcEEEEhHHHHHHHHCC-EeeCCCceecCCCCCCeEEEEEEecC
Confidence 146899999998887521 11122 12468999986655579998887664
No 35
>PLN02276 gibberellin 20-oxidase
Probab=84.66 E-value=11 Score=36.03 Aligned_cols=87 Identities=22% Similarity=0.234 Sum_probs=55.5
Q ss_pred cccEEEecCCCC------cccccccccccccccCCCCceEEEEEEEecCCCCCceeeecCCCCCCCCCCCcccccccCCc
Q 023050 162 EGLQVLHYEAGQ------KYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKT 235 (288)
Q Consensus 162 E~lqv~rY~~G~------~y~~H~D~~~~~~~~~~~~~R~~T~liYLND~~eGGeT~Fp~~~~~~s~~~~~~~~~~c~~~ 235 (288)
.-+++.+|.+.. .-.+|.|+. .+|+|+. | ..||==++.+ ..
T Consensus 206 ~~lrl~~YP~~~~~~~~~g~~~HTD~g------------~lTlL~Q--d-~v~GLQV~~~------------------g~ 252 (361)
T PLN02276 206 SIMRCNYYPPCQEPELTLGTGPHCDPT------------SLTILHQ--D-QVGGLQVFVD------------------NK 252 (361)
T ss_pred ceeeeEeCCCCCCcccccCCccccCCc------------eeEEEEe--c-CCCceEEEEC------------------CE
Confidence 358889997642 245787764 4677754 4 3455444432 14
Q ss_pred CeEEeCCCceEEEEec----CCCCCCCCCCCcccccccccccEEEEEEeee
Q 023050 236 GLSIKPKMGDALLFWS----MKPDASLDPSSLHGGCPVIKGNKWSSTKWIR 282 (288)
Q Consensus 236 ~l~V~Pk~G~alvF~n----~~~~g~~D~~~lH~g~PV~~G~K~i~~~W~~ 282 (288)
.+.|+|..|.+||--- ..-|| .-..++|++.......||++.-+++
T Consensus 253 Wi~V~p~pgalVVNiGD~L~~~TNG-~~kSt~HRVv~~~~~~R~Sia~F~~ 302 (361)
T PLN02276 253 WRSVRPRPGALVVNIGDTFMALSNG-RYKSCLHRAVVNSERERRSLAFFLC 302 (361)
T ss_pred EEEcCCCCCeEEEEcHHHHHHHhCC-ccccccceeecCCCCCEEEEEEEec
Confidence 7899999999988631 11122 2257899986444568999887776
No 36
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=83.84 E-value=12 Score=35.61 Aligned_cols=88 Identities=18% Similarity=0.182 Sum_probs=55.2
Q ss_pred cccEEEecCCC------CcccccccccccccccCCCCceEEEEEEEecCCCCCceeeecCCCCCCCCCCCcccccccCCc
Q 023050 162 EGLQVLHYEAG------QKYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKT 235 (288)
Q Consensus 162 E~lqv~rY~~G------~~y~~H~D~~~~~~~~~~~~~R~~T~liYLND~~eGGeT~Fp~~~~~~s~~~~~~~~~~c~~~ 235 (288)
..+++.+|.+- -.-.+|.|+. .+|+|+. | ..||==++.+ .+
T Consensus 197 ~~lrl~~YPp~~~~~~~~G~~~HtD~g------------~lTlL~Q--d-~v~GLQV~~~------------------g~ 243 (348)
T PLN02912 197 QHMAINYYPPCPQPELTYGLPGHKDAN------------LITVLLQ--D-EVSGLQVFKD------------------GK 243 (348)
T ss_pred ceeeeeecCCCCChhhcCCcCCCcCCC------------ceEEEEE--C-CCCceEEEEC------------------Cc
Confidence 35888999872 1245788864 4677744 4 2355444432 24
Q ss_pred CeEEeCCCceEEEEec----CCCCCCCCCCCcccccccccccEEEEEEeeee
Q 023050 236 GLSIKPKMGDALLFWS----MKPDASLDPSSLHGGCPVIKGNKWSSTKWIRV 283 (288)
Q Consensus 236 ~l~V~Pk~G~alvF~n----~~~~g~~D~~~lH~g~PV~~G~K~i~~~W~~~ 283 (288)
.+.|+|..|..||--- ..-|| .-..++|++-....+.||++.-+++-
T Consensus 244 Wi~V~p~pgalvVNiGD~L~~~TNG-~~kSt~HRVv~~~~~~R~Sia~F~~p 294 (348)
T PLN02912 244 WIAVNPIPNTFIVNLGDQMQVISND-KYKSVLHRAVVNTDKERISIPTFYCP 294 (348)
T ss_pred EEECCCcCCeEEEEcCHHHHHHhCC-EEEcccccccCCCCCCEEEEEEEecC
Confidence 7899999998887521 11122 12468999864445679999877764
No 37
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=83.54 E-value=12 Score=35.75 Aligned_cols=88 Identities=14% Similarity=0.092 Sum_probs=55.2
Q ss_pred ccEEEecCCCC------cccccccccccccccCCCCceEEEEEEEecCCCCCceeeecCCCCCCCCCCCcccccccCCcC
Q 023050 163 GLQVLHYEAGQ------KYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTG 236 (288)
Q Consensus 163 ~lqv~rY~~G~------~y~~H~D~~~~~~~~~~~~~R~~T~liYLND~~eGGeT~Fp~~~~~~s~~~~~~~~~~c~~~~ 236 (288)
.+++.+|.+-. ...+|.|+. .+|+|+ .|...||==+..+ ...
T Consensus 204 ~lRl~~YPp~~~~~~~~g~~~HTD~g------------~lTlL~--qd~~v~GLQV~~~------------------g~W 251 (348)
T PLN00417 204 DTRFNMYPPCPRPDKVIGVKPHADGS------------AFTLLL--PDKDVEGLQFLKD------------------GKW 251 (348)
T ss_pred eeeeeecCCCCCcccccCCcCccCCC------------ceEEEE--ecCCCCceeEeEC------------------CeE
Confidence 48999997521 245788864 467663 4433455434321 147
Q ss_pred eEEeCCCceEEEEec----CCCCCCCCCCCcccccccccccEEEEEEeeee
Q 023050 237 LSIKPKMGDALLFWS----MKPDASLDPSSLHGGCPVIKGNKWSSTKWIRV 283 (288)
Q Consensus 237 l~V~Pk~G~alvF~n----~~~~g~~D~~~lH~g~PV~~G~K~i~~~W~~~ 283 (288)
+.|.|..|.+||--. ..-|| .-..++|++.+...++||++.-+++-
T Consensus 252 i~V~p~pg~lVVNiGD~Le~~Tng-~~kSt~HRVv~~~~~~R~Si~fF~~P 301 (348)
T PLN00417 252 YKAPIVPDTILINVGDQMEIMSNG-IYKSPVHRVVTNREKERISVATFCIP 301 (348)
T ss_pred EECCCCCCcEEEEcChHHHHHhCC-eecccceEEecCCCCCEEEEEEEecC
Confidence 889999999887531 01112 22578999976656789999887763
No 38
>COG5285 Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=83.33 E-value=5.1 Score=37.44 Aligned_cols=93 Identities=19% Similarity=0.249 Sum_probs=57.3
Q ss_pred ccccccccccccccCCCCceEEEEEEEecCCC-CCceeee-cCCCCCCCCCCCccccc-ccCCcCeEEeCCCceEEEEec
Q 023050 175 YEPHFDYFMDEFNTKNGGQRMATVLMYLSDVE-EGGETVF-PNAQGNISAVPWWNELS-ECGKTGLSIKPKMGDALLFWS 251 (288)
Q Consensus 175 y~~H~D~~~~~~~~~~~~~R~~T~liYLND~~-eGGeT~F-p~~~~~~s~~~~~~~~~-~c~~~~l~V~Pk~G~alvF~n 251 (288)
=.||.|+... ..+..-...+.+=|-|.. +-|.|.+ |... ..+..+.|-+.+ .-....+.|.-.+|++|+|.
T Consensus 133 t~~HqD~~~~----~~~~~~lV~~wiAl~d~~~dnGat~vvPgSH-~~~~~~~r~d~~~y~~~~~~pv~lekGDallF~- 206 (299)
T COG5285 133 TRWHQDYPLV----SPGYPALVNAWIALCDFTEDNGATLVVPGSH-KWDVIPERPDHETYLERNAVPVELEKGDALLFN- 206 (299)
T ss_pred cccccccccc----cCCccceEEEEEeccccccccCceEEEeccc-ccccCCCCCCccchhhhcceeeeecCCCEEEEc-
Confidence 4689996442 234445666788888874 5677766 5432 211113332221 11123677888999999994
Q ss_pred CCCCCCCCCCCcccccccccccEEEEEEee
Q 023050 252 MKPDASLDPSSLHGGCPVIKGNKWSSTKWI 281 (288)
Q Consensus 252 ~~~~g~~D~~~lH~g~PV~~G~K~i~~~W~ 281 (288)
+.++|++---..+.+-.+....
T Consensus 207 --------~~L~HaA~aNrT~~~R~A~~~~ 228 (299)
T COG5285 207 --------GSLWHAAGANRTSADRVALTLQ 228 (299)
T ss_pred --------chhhhhhhcCCCCcccceEEEE
Confidence 6899999998888555544443
No 39
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=83.23 E-value=13 Score=35.30 Aligned_cols=90 Identities=18% Similarity=0.093 Sum_probs=55.3
Q ss_pred cccEEEecCCCC------cccccccccccccccCCCCceEEEEEEEecCCCCCceeeecCCCCCCCCCCCcccccccCCc
Q 023050 162 EGLQVLHYEAGQ------KYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKT 235 (288)
Q Consensus 162 E~lqv~rY~~G~------~y~~H~D~~~~~~~~~~~~~R~~T~liYLND~~eGGeT~Fp~~~~~~s~~~~~~~~~~c~~~ 235 (288)
..+++.+|.+-. ...+|.|+. .+|+|+- | ..||==++...+ ..
T Consensus 193 ~~lR~~~YPp~~~~~~~~g~~~HtD~g------------~lTlL~q--d-~v~GLQV~~~~~----------------g~ 241 (345)
T PLN02750 193 SFARFNHYPPCPAPHLALGVGRHKDGG------------ALTVLAQ--D-DVGGLQISRRSD----------------GE 241 (345)
T ss_pred eEEEEEecCCCCCcccccCcCCCCCCC------------eEEEEec--C-CCCceEEeecCC----------------Ce
Confidence 358899998631 346788864 4677633 3 235544433211 14
Q ss_pred CeEEeCCCceEEEEec----CCCCCCCCCCCcccccccccccEEEEEEeeee
Q 023050 236 GLSIKPKMGDALLFWS----MKPDASLDPSSLHGGCPVIKGNKWSSTKWIRV 283 (288)
Q Consensus 236 ~l~V~Pk~G~alvF~n----~~~~g~~D~~~lH~g~PV~~G~K~i~~~W~~~ 283 (288)
.+.|.|..|..||=-- ..-|| .=..++|++......+||++.-+++-
T Consensus 242 Wi~V~p~pg~~vVNiGD~L~~~Tng-~~~St~HRVv~~~~~~R~Si~~F~~P 292 (345)
T PLN02750 242 WIPVKPIPDAFIINIGNCMQVWTND-LYWSAEHRVVVNSQKERFSIPFFFFP 292 (345)
T ss_pred EEEccCCCCeEEEEhHHHHHHHhCC-eeecccceeccCCCCCEEEEEEeecC
Confidence 7899999998887421 11122 12468999975555679998877654
No 40
>PLN02947 oxidoreductase
Probab=82.87 E-value=14 Score=35.61 Aligned_cols=87 Identities=18% Similarity=0.170 Sum_probs=54.3
Q ss_pred ccEEEecCCCC------cccccccccccccccCCCCceEEEEEEEecCCCCCceeeecCCCCCCCCCCCcccccccCCcC
Q 023050 163 GLQVLHYEAGQ------KYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTG 236 (288)
Q Consensus 163 ~lqv~rY~~G~------~y~~H~D~~~~~~~~~~~~~R~~T~liYLND~~eGGeT~Fp~~~~~~s~~~~~~~~~~c~~~~ 236 (288)
-+++.+|.+.. ...+|.|+. .+|+|+. ++ .||==++.+ .+.
T Consensus 226 ~lrln~YPp~p~~~~~~G~~~HTD~g------------~lTlL~Q-d~--v~GLQV~~~------------------g~W 272 (374)
T PLN02947 226 MMVVNCYPACPEPELTLGMPPHSDYG------------FLTLLLQ-DE--VEGLQIMHA------------------GRW 272 (374)
T ss_pred eeeeecCCCCCCcccccCCCCccCCC------------ceEEEEe-cC--CCCeeEeEC------------------CEE
Confidence 57778888642 245787763 5788866 33 355444442 147
Q ss_pred eEEeCCCceEEEEec----CCCCCCCCCCCcccccccccccEEEEEEeeee
Q 023050 237 LSIKPKMGDALLFWS----MKPDASLDPSSLHGGCPVIKGNKWSSTKWIRV 283 (288)
Q Consensus 237 l~V~Pk~G~alvF~n----~~~~g~~D~~~lH~g~PV~~G~K~i~~~W~~~ 283 (288)
+.|+|..|.+||--- ..-||. -..++|++.......||++..++.-
T Consensus 273 i~V~p~pga~VVNvGD~Lq~~SNG~-~kS~~HRVv~~~~~~R~Sia~F~~P 322 (374)
T PLN02947 273 VTVEPIPGSFVVNVGDHLEIFSNGR-YKSVLHRVRVNSTKPRISVASLHSL 322 (374)
T ss_pred EeCCCCCCeEEEEeCceeeeeeCCE-EeccccccccCCCCCEEEEEEEecC
Confidence 889999988777421 111221 2468999965555689998877653
No 41
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase
Probab=82.32 E-value=15 Score=35.24 Aligned_cols=89 Identities=16% Similarity=0.126 Sum_probs=54.7
Q ss_pred ccEEEecCCCC------cccccccccccccccCCCCceEEEEEEEecCCCCCceeeecCCCCCCCCCCCcccccccCCcC
Q 023050 163 GLQVLHYEAGQ------KYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTG 236 (288)
Q Consensus 163 ~lqv~rY~~G~------~y~~H~D~~~~~~~~~~~~~R~~T~liYLND~~eGGeT~Fp~~~~~~s~~~~~~~~~~c~~~~ 236 (288)
.+++.+|.+-. ...+|.|+. .+|+|+. ++ .||==+..... ++.
T Consensus 196 ~lrl~~YP~~~~~~~~~G~~~HTD~g------------~lTlL~Q-d~--v~GLQV~~~~~----------------~~W 244 (358)
T PLN02515 196 KVVVNYYPKCPQPDLTLGLKRHTDPG------------TITLLLQ-DQ--VGGLQATRDGG----------------KTW 244 (358)
T ss_pred eEEEeecCCCCChhhccCCCCCCCCC------------eEEEEec-CC--CCceEEEECCC----------------CeE
Confidence 47888898621 355788864 5677744 32 34533333211 147
Q ss_pred eEEeCCCceEEEEec----CCCCCCCCCCCcccccccccccEEEEEEeeee
Q 023050 237 LSIKPKMGDALLFWS----MKPDASLDPSSLHGGCPVIKGNKWSSTKWIRV 283 (288)
Q Consensus 237 l~V~Pk~G~alvF~n----~~~~g~~D~~~lH~g~PV~~G~K~i~~~W~~~ 283 (288)
+.|.|..|.+||--- ..-||. -..++|++-....++||++.-+++-
T Consensus 245 i~Vpp~pgalVVNiGD~L~~~TNG~-~kSt~HRVv~~~~~~R~Si~~F~~P 294 (358)
T PLN02515 245 ITVQPVEGAFVVNLGDHGHYLSNGR-FKNADHQAVVNSNCSRLSIATFQNP 294 (358)
T ss_pred EECCCCCCeEEEEccHHHHHHhCCe-eeeecceEECCCCCCEEEEEEEecC
Confidence 899999998887521 112232 2578999865556789998877654
No 42
>PLN02254 gibberellin 3-beta-dioxygenase
Probab=81.88 E-value=14 Score=35.57 Aligned_cols=87 Identities=22% Similarity=0.264 Sum_probs=54.7
Q ss_pred ccEEEecCCCC------cccccccccccccccCCCCceEEEEEEEecCCCCCceeeecCCCCCCCCCCCcccccccCCcC
Q 023050 163 GLQVLHYEAGQ------KYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTG 236 (288)
Q Consensus 163 ~lqv~rY~~G~------~y~~H~D~~~~~~~~~~~~~R~~T~liYLND~~eGGeT~Fp~~~~~~s~~~~~~~~~~c~~~~ 236 (288)
.+++.+|.+.. .-.+|.|.. .+|+|+. ++ .||==++... ...
T Consensus 211 ~lRl~~YPp~p~~~~~~G~~~HtD~g------------~lTiL~Q-d~--v~GLQV~~~~-----------------~~W 258 (358)
T PLN02254 211 ALQLNSYPVCPDPDRAMGLAPHTDSS------------LLTILYQ-SN--TSGLQVFREG-----------------VGW 258 (358)
T ss_pred eEEEecCCCCCCcccccCcCCccCCC------------cEEEEec-CC--CCCceEECCC-----------------CEE
Confidence 57888998631 256788864 5787765 33 3554444321 147
Q ss_pred eEEeCCCceEEEEec----CCCCCCCCCCCcccccccccccEEEEEEeee
Q 023050 237 LSIKPKMGDALLFWS----MKPDASLDPSSLHGGCPVIKGNKWSSTKWIR 282 (288)
Q Consensus 237 l~V~Pk~G~alvF~n----~~~~g~~D~~~lH~g~PV~~G~K~i~~~W~~ 282 (288)
+.|+|..|.+||--- ...|| .-..++|++-.-...+||++.-+++
T Consensus 259 i~V~p~pgalVVNiGD~lq~~SNg-~~kS~~HRVv~~~~~~R~Sia~F~~ 307 (358)
T PLN02254 259 VTVPPVPGSLVVNVGDLLHILSNG-RFPSVLHRAVVNKTRHRISVAYFYG 307 (358)
T ss_pred EEcccCCCCEEEEhHHHHHHHhCC-eeccccceeecCCCCCEEEEEEEec
Confidence 899999999888531 11222 1357899996444457998877765
No 43
>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=81.77 E-value=19 Score=34.60 Aligned_cols=87 Identities=15% Similarity=0.130 Sum_probs=53.5
Q ss_pred ccEEEecCCC----C--cccccccccccccccCCCCceEEEEEEEecCC-CCCceeeecCCCCCCCCCCCcccccccCCc
Q 023050 163 GLQVLHYEAG----Q--KYEPHFDYFMDEFNTKNGGQRMATVLMYLSDV-EEGGETVFPNAQGNISAVPWWNELSECGKT 235 (288)
Q Consensus 163 ~lqv~rY~~G----~--~y~~H~D~~~~~~~~~~~~~R~~T~liYLND~-~eGGeT~Fp~~~~~~s~~~~~~~~~~c~~~ 235 (288)
.+++.+|.+. . .-.+|.|+. .+|+|+ .|. ..||==++.+ ..
T Consensus 212 ~lR~~~YP~~~~~~~~~g~~~HtD~g------------~lTlL~--qd~~~v~GLQV~~~------------------g~ 259 (361)
T PLN02758 212 AVRMNYYPPCSRPDLVLGLSPHSDGS------------ALTVLQ--QGKGSCVGLQILKD------------------NT 259 (361)
T ss_pred eeeeecCCCCCCcccccCccCccCCc------------eeEEEE--eCCCCCCCeeeeeC------------------CE
Confidence 5778889752 1 235788864 467774 443 3455333322 14
Q ss_pred CeEEeCCCceEEEEec----CCCCCCCCCCCcccccccccccEEEEEEeee
Q 023050 236 GLSIKPKMGDALLFWS----MKPDASLDPSSLHGGCPVIKGNKWSSTKWIR 282 (288)
Q Consensus 236 ~l~V~Pk~G~alvF~n----~~~~g~~D~~~lH~g~PV~~G~K~i~~~W~~ 282 (288)
.+.|.|..|..||--- ..-|| .-..+.|++......+||++.-+++
T Consensus 260 Wi~V~p~pgalVVNiGD~L~~~SNG-~~kS~~HRVv~~~~~~R~Sia~F~~ 309 (361)
T PLN02758 260 WVPVHPVPNALVINIGDTLEVLTNG-KYKSVEHRAVTNKEKDRLSIVTFYA 309 (361)
T ss_pred EEeCCCCCCeEEEEccchhhhhcCC-eeecccceeecCCCCCEEEEEEEec
Confidence 7889999998887531 11222 1257899997554557999887765
No 44
>PF14033 DUF4246: Protein of unknown function (DUF4246)
Probab=81.40 E-value=6.2 Score=39.73 Aligned_cols=96 Identities=15% Similarity=0.151 Sum_probs=59.6
Q ss_pred cccccccccccccCCCCceEEEEEEEecCC-CCCceeeecCCCC-CC-------C--CCCCcccc---c---ccCCcCeE
Q 023050 176 EPHFDYFMDEFNTKNGGQRMATVLMYLSDV-EEGGETVFPNAQG-NI-------S--AVPWWNEL---S---ECGKTGLS 238 (288)
Q Consensus 176 ~~H~D~~~~~~~~~~~~~R~~T~liYLND~-~eGGeT~Fp~~~~-~~-------s--~~~~~~~~---~---~c~~~~l~ 238 (288)
.||+++.. +.+-.+|.|+|+... -....+.|-.... .. . +..++..+ . .|-+.-=+
T Consensus 364 ~WHvEG~l-------NE~IvATalYyyd~eNIT~s~L~FR~~~~d~~~~~~~~~~q~~~~~~~~~~g~~~~~~~~q~~Gs 436 (501)
T PF14033_consen 364 SWHVEGQL-------NEHIVATALYYYDSENITESRLSFRQQTDDPDLDQELSYEQDDHEWLERVFGIEDGGPAVQELGS 436 (501)
T ss_pred CccccCCc-------ccceeEEEEEEEecCccCCCceEeeeeccCccccccccccccchhHHHHhcCCCCCccceEEcCc
Confidence 69998764 346779999988642 2455677754431 11 0 00111111 1 12122235
Q ss_pred EeCCCceEEEEecCCCCCCCCCCCccccccc------ccccEEEEEEeeeecccc
Q 023050 239 IKPKMGDALLFWSMKPDASLDPSSLHGGCPV------IKGNKWSSTKWIRVNEYK 287 (288)
Q Consensus 239 V~Pk~G~alvF~n~~~~g~~D~~~lH~g~PV------~~G~K~i~~~W~~~~~~~ 287 (288)
|.-+.|++|+|+| ..-|++.|. ..|.+-+++.|+-.+.++
T Consensus 437 v~~~~gr~i~fPN---------~~qhrv~~f~L~D~tkpGhrkil~lfLvDP~~~ 482 (501)
T PF14033_consen 437 VETKEGRLIAFPN---------TLQHRVSPFELADPTKPGHRKILALFLVDPHIR 482 (501)
T ss_pred EEccCCcEEeccc---------hhhhccCCccccCCCCCCcEEEEEEEecCCCCc
Confidence 7888999999999 467777765 468899999998777665
No 45
>PLN02216 protein SRG1
Probab=81.38 E-value=14 Score=35.41 Aligned_cols=88 Identities=16% Similarity=0.178 Sum_probs=54.3
Q ss_pred ccEEEecCCCC------cccccccccccccccCCCCceEEEEEEEecCCCCCceeeecCCCCCCCCCCCcccccccCCcC
Q 023050 163 GLQVLHYEAGQ------KYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTG 236 (288)
Q Consensus 163 ~lqv~rY~~G~------~y~~H~D~~~~~~~~~~~~~R~~T~liYLND~~eGGeT~Fp~~~~~~s~~~~~~~~~~c~~~~ 236 (288)
.+++.+|.+-. ...+|.|+. .+|+|+.-++ .||==+... ...
T Consensus 211 ~lRl~~YPp~p~~~~~~G~~~HtD~g------------~lTlL~q~~~--v~GLQV~~~------------------g~W 258 (357)
T PLN02216 211 SIRMNYYPPCPQPDQVIGLTPHSDAV------------GLTILLQVNE--VEGLQIKKD------------------GKW 258 (357)
T ss_pred eeEEeecCCCCCcccccCccCcccCc------------eEEEEEecCC--CCceeEEEC------------------CEE
Confidence 58889997631 245777753 4666644343 355444432 147
Q ss_pred eEEeCCCceEEEEec----CCCCCCCCCCCcccccccccccEEEEEEeeee
Q 023050 237 LSIKPKMGDALLFWS----MKPDASLDPSSLHGGCPVIKGNKWSSTKWIRV 283 (288)
Q Consensus 237 l~V~Pk~G~alvF~n----~~~~g~~D~~~lH~g~PV~~G~K~i~~~W~~~ 283 (288)
+.|+|..|..||--- ..-|| .-..++|++......+|+++.-+++-
T Consensus 259 i~V~p~pgalvVNiGD~L~~~TNG-~~kS~~HRVv~~~~~~R~Si~~F~~P 308 (357)
T PLN02216 259 VSVKPLPNALVVNVGDILEIITNG-TYRSIEHRGVVNSEKERLSVATFHNT 308 (357)
T ss_pred EECCCCCCeEEEEcchhhHhhcCC-eeeccCceeecCCCCCEEEEEEEecC
Confidence 899999998887521 11122 12468999865545689998877653
No 46
>PLN02365 2-oxoglutarate-dependent dioxygenase
Probab=81.27 E-value=12 Score=34.95 Aligned_cols=109 Identities=15% Similarity=0.081 Sum_probs=63.1
Q ss_pred HHHHHHHHHhhcCC-CCC----CCcccEEEecCCC-----C-cccccccccccccccCCCCceEEEEEEEecCCCCCcee
Q 023050 143 IRDIEKRIADFTFF-PLE----NGEGLQVLHYEAG-----Q-KYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVEEGGET 211 (288)
Q Consensus 143 v~~i~~ri~~~~~~-p~~----~~E~lqv~rY~~G-----~-~y~~H~D~~~~~~~~~~~~~R~~T~liYLND~~eGGeT 211 (288)
..+|.+-++..+|+ +.. ....+++++|.+- + .-.+|.|+. .+|+|+. |...||==
T Consensus 125 ~~~ll~~la~~Lgl~~~~~f~~~~~~lr~~~YP~~p~~~~~~g~~~HtD~g------------~lTlL~q--d~~~~GLq 190 (300)
T PLN02365 125 AMDLARKLAESLGLVEGDFFQGWPSQFRINKYNFTPETVGSSGVQIHTDSG------------FLTILQD--DENVGGLE 190 (300)
T ss_pred HHHHHHHHHHHcCCCChHHHhhcccceeeeecCCCCCccccccccCccCCC------------ceEEEec--CCCcCceE
Confidence 33444444555677 422 1236889999542 1 245677753 4777744 43345543
Q ss_pred eecCCCCCCCCCCCcccccccCCcCeEEeCCCceEEEEec----CCCCCCCCCCCcccccccccccEEEEEEeee
Q 023050 212 VFPNAQGNISAVPWWNELSECGKTGLSIKPKMGDALLFWS----MKPDASLDPSSLHGGCPVIKGNKWSSTKWIR 282 (288)
Q Consensus 212 ~Fp~~~~~~s~~~~~~~~~~c~~~~l~V~Pk~G~alvF~n----~~~~g~~D~~~lH~g~PV~~G~K~i~~~W~~ 282 (288)
+..... ...+.|.|..|..||--- ..-|| .-..++|++......+||++.-++.
T Consensus 191 V~~~~~----------------g~Wi~V~p~pga~vVNiGD~l~~~TNG-~~~St~HRVv~~~~~~R~Si~~F~~ 248 (300)
T PLN02365 191 VMDPSS----------------GEFVPVDPLPGTLLVNLGDVATAWSNG-RLCNVKHRVQCKEATMRISIASFLL 248 (300)
T ss_pred EEECCC----------------CeEEecCCCCCeEEEEhhHHHHHHhCC-ceecccceeEcCCCCCEEEEEEEec
Confidence 433211 147889999999888521 11122 2357899997655567999887764
No 47
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase
Probab=81.23 E-value=17 Score=34.35 Aligned_cols=88 Identities=16% Similarity=0.191 Sum_probs=55.2
Q ss_pred ccEEEecCCCC------cccccccccccccccCCCCceEEEEEEEecCCCCCceeeecCCCCCCCCCCCcccccccCCcC
Q 023050 163 GLQVLHYEAGQ------KYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTG 236 (288)
Q Consensus 163 ~lqv~rY~~G~------~y~~H~D~~~~~~~~~~~~~R~~T~liYLND~~eGGeT~Fp~~~~~~s~~~~~~~~~~c~~~~ 236 (288)
.+++.+|.+-. ...+|.|+. .+|+| +.|...||==+..+ ...
T Consensus 159 ~lRl~~YPp~~~~~~~~G~~~HTD~g------------~lTlL--~qd~~v~GLQV~~~------------------g~W 206 (321)
T PLN02299 159 GTKVSNYPPCPKPDLVKGLRAHTDAG------------GIILL--FQDDKVSGLQLLKD------------------GEW 206 (321)
T ss_pred eeeeEecCCCCCcccccCccCccCCC------------eEEEE--EecCCCCCcCcccC------------------CeE
Confidence 47899998621 245888864 46776 44433355333321 147
Q ss_pred eEEeCCCceEEEEec----CCCCCCCCCCCcccccccccccEEEEEEeeee
Q 023050 237 LSIKPKMGDALLFWS----MKPDASLDPSSLHGGCPVIKGNKWSSTKWIRV 283 (288)
Q Consensus 237 l~V~Pk~G~alvF~n----~~~~g~~D~~~lH~g~PV~~G~K~i~~~W~~~ 283 (288)
+.|+|..|.+||--- ..-||. -..+.|++.....++||++.-+++-
T Consensus 207 i~V~p~pg~lvVNiGD~l~~~Tng~-~kS~~HRVv~~~~~~R~Si~~F~~p 256 (321)
T PLN02299 207 VDVPPMRHSIVVNLGDQLEVITNGK-YKSVMHRVVAQTDGNRMSIASFYNP 256 (321)
T ss_pred EECCCCCCeEEEEeCHHHHHHhCCc-eecccceeecCCCCCEEEEEEEecC
Confidence 889999998887531 112222 2568999985556789999887664
No 48
>PLN02997 flavonol synthase
Probab=81.15 E-value=10 Score=35.94 Aligned_cols=87 Identities=15% Similarity=0.078 Sum_probs=55.0
Q ss_pred ccEEEecCCCC------cccccccccccccccCCCCceEEEEEEEecCCCCCceeeecCCCCCCCCCCCcccccccCCcC
Q 023050 163 GLQVLHYEAGQ------KYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTG 236 (288)
Q Consensus 163 ~lqv~rY~~G~------~y~~H~D~~~~~~~~~~~~~R~~T~liYLND~~eGGeT~Fp~~~~~~s~~~~~~~~~~c~~~~ 236 (288)
-+++.+|.+-. ...+|.|+. .+|+|+. |. .||==+..+ ...
T Consensus 184 ~lRl~~YP~~~~~~~~~g~~~HTD~g------------~lTlL~Q--d~-v~GLQV~~~------------------g~W 230 (325)
T PLN02997 184 VLRVNFYPPTQDTELVIGAAAHSDMG------------AIALLIP--NE-VPGLQAFKD------------------EQW 230 (325)
T ss_pred eeeeecCCCCCCcccccCccCccCCC------------ceEEEec--CC-CCCEEEeEC------------------CcE
Confidence 48899998631 256788864 5777744 32 455444432 147
Q ss_pred eEEeCCCceEEEEec----CCCCCCCCCCCcccccccccccEEEEEEeeee
Q 023050 237 LSIKPKMGDALLFWS----MKPDASLDPSSLHGGCPVIKGNKWSSTKWIRV 283 (288)
Q Consensus 237 l~V~Pk~G~alvF~n----~~~~g~~D~~~lH~g~PV~~G~K~i~~~W~~~ 283 (288)
+.|+|..|.+||--- ..-|| .-..++|++..-....||++.-+++-
T Consensus 231 i~V~p~pgalvVNiGD~Le~~TNG-~~kSt~HRVv~~~~~~R~Si~fF~~P 280 (325)
T PLN02997 231 LDLNYINSAVVVIIGDQLMRMTNG-RFKNVLHRAKTDKERLRISWPVFVAP 280 (325)
T ss_pred EECCCCCCeEEEEechHHHHHhCC-ccccccceeeCCCCCCEEEEEEEecC
Confidence 899999998887531 11122 23468999975545679998777654
No 49
>KOG3959 consensus 2-Oxoglutarate- and iron-dependent dioxygenase-related proteins [General function prediction only]
Probab=80.20 E-value=2.5 Score=38.32 Aligned_cols=93 Identities=24% Similarity=0.358 Sum_probs=53.8
Q ss_pred CCCEEEEcCCCCHHHHHHHHHHhcCc-CCCceeEeCC--CCCc---cccceeeccceeecCCccHHHHHHHHHHHhhcC-
Q 023050 83 EPRAFVYHNFLSKEECEYLINLATPH-MRKSTVVDSD--TGKS---KDSRVRTSSGTFLARGRDKIIRDIEKRIADFTF- 155 (288)
Q Consensus 83 ~P~i~vi~nfLs~~EC~~Li~~a~~~-~~~s~v~~~~--~g~~---~~~~~Rts~~~~l~~~~d~vv~~i~~ri~~~~~- 155 (288)
=|.+.+++||||.+|=.+|++..... +..|+-...+ .|-. .....|+..-+-+ ....+.+.+|+.++-.
T Consensus 71 ~pG~~lie~Fls~~Eea~l~~~~D~~pW~~SQSGRRKQdyGPKvNFkk~Klkt~~F~G~----P~~~~~v~rrm~~yp~l 146 (306)
T KOG3959|consen 71 IPGLTLIENFLSESEEAKLLNMIDTVPWAQSQSGRRKQDYGPKVNFKKKKLKTDTFVGM----PEYADMVLRRMSEYPVL 146 (306)
T ss_pred cCCeeehhhhhccchHhHHHHHhccCchhhhcccccccccCCccchhhhhhccCcccCC----chHHHHHHHHhhccchh
Confidence 58899999999999999999998754 1111110000 1111 1223444432222 3456667777776532
Q ss_pred ---CCCCCCcccEEEecCC--CCcccccccccc
Q 023050 156 ---FPLENGEGLQVLHYEA--GQKYEPHFDYFM 183 (288)
Q Consensus 156 ---~p~~~~E~lqv~rY~~--G~~y~~H~D~~~ 183 (288)
.|++.. =+.|++ |..-.||.|..+
T Consensus 147 ~gfqp~EqC----nLeYep~kgsaIdpH~DD~W 175 (306)
T KOG3959|consen 147 KGFQPFEQC----NLEYEPVKGSAIDPHQDDMW 175 (306)
T ss_pred hccCcHHHc----CcccccccCCccCccccchh
Confidence 232221 144774 888999999654
No 50
>TIGR00568 alkb DNA alkylation damage repair protein AlkB. Proteins in this family have an as of yet undetermined function in the repair of alkylation damage to DNA. Alignment and family designation based on phylogenomic analysis of Jonathan A. Eisen (PhD Thesis, Stanford University, 1999).
Probab=79.56 E-value=21 Score=30.58 Aligned_cols=86 Identities=17% Similarity=0.150 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHhhcCCCCCCCcccEEEecCCCCcccccccccccccccCCCCceEEEEEEEecCCCCCceeeecCCCCCC
Q 023050 141 KIIRDIEKRIADFTFFPLENGEGLQVLHYEAGQKYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNI 220 (288)
Q Consensus 141 ~vv~~i~~ri~~~~~~p~~~~E~lqv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLND~~eGGeT~Fp~~~~~~ 220 (288)
+.+..|.++++...+.+....+..-|..|.+|+.-++|.|.... ....-++++- -|..-.|-......
T Consensus 74 ~~L~~L~~~v~~~~g~~~~~~n~~LvN~Y~~Gd~mg~H~D~~e~-----~~~~pI~SvS-------LG~~r~F~~~~~~~ 141 (169)
T TIGR00568 74 QDLGDLCERVATAAGFPDFQPDACLVNRYAPGATLSLHQDRDEP-----DLRAPLLSVS-------LGLPAIFLIGGLKR 141 (169)
T ss_pred HHHHHHHHHHHHHhCCCCCCCCEEEEEeecCCCccccccccccc-----cCCCCEEEEe-------CCCCEEEEecCCcC
Confidence 57888999999888875445567889999999999999994221 1122333332 24444554321100
Q ss_pred CCCCCcccccccCCcCeEEeCCCceEEEEe
Q 023050 221 SAVPWWNELSECGKTGLSIKPKMGDALLFW 250 (288)
Q Consensus 221 s~~~~~~~~~~c~~~~l~V~Pk~G~alvF~ 250 (288)
.+...++.-.-|++|++-
T Consensus 142 ------------~~~~~~l~L~sGsllvM~ 159 (169)
T TIGR00568 142 ------------NDPPKRLRLHSGDVVIMG 159 (169)
T ss_pred ------------CCceEEEEeCCCCEEEEC
Confidence 112477899999999995
No 51
>PTZ00273 oxidase reductase; Provisional
Probab=79.21 E-value=29 Score=32.52 Aligned_cols=87 Identities=21% Similarity=0.187 Sum_probs=53.1
Q ss_pred ccEEEecCCCC-------cccccccccccccccCCCCceEEEEEEEecCCCCCceeeecCCCCCCCCCCCcccccccCCc
Q 023050 163 GLQVLHYEAGQ-------KYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKT 235 (288)
Q Consensus 163 ~lqv~rY~~G~-------~y~~H~D~~~~~~~~~~~~~R~~T~liYLND~~eGGeT~Fp~~~~~~s~~~~~~~~~~c~~~ 235 (288)
.+++.+|.+.. .-.+|.|+. .+|+|. .|. .||==++... ..
T Consensus 178 ~lrl~~YP~~~~~~~~~~g~~~HTD~g------------~lTlL~--qd~-~~GLqV~~~~-----------------g~ 225 (320)
T PTZ00273 178 VFRMKHYPALPQTKKGRTVCGEHTDYG------------IITLLY--QDS-VGGLQVRNLS-----------------GE 225 (320)
T ss_pred eeeeeecCCCCCccccCcccccccCCC------------eEEEEe--cCC-CCceEEECCC-----------------CC
Confidence 47889998631 135677763 567774 342 3553344321 14
Q ss_pred CeEEeCCCceEEEEec----CCCCCCCCCCCcccccccccccEEEEEEeeee
Q 023050 236 GLSIKPKMGDALLFWS----MKPDASLDPSSLHGGCPVIKGNKWSSTKWIRV 283 (288)
Q Consensus 236 ~l~V~Pk~G~alvF~n----~~~~g~~D~~~lH~g~PV~~G~K~i~~~W~~~ 283 (288)
.+.|+|..|.+||--- ..-|| .-..++|++... ..+||++.-+++-
T Consensus 226 Wi~V~p~pg~lvVNvGD~l~~~TnG-~~kSt~HRVv~~-~~~R~Si~~F~~p 275 (320)
T PTZ00273 226 WMDVPPLEGSFVVNIGDMMEMWSNG-RYRSTPHRVVNT-GVERYSMPFFCEP 275 (320)
T ss_pred EEeCCCCCCeEEEEHHHHHHHHHCC-eeeCCCccccCC-CCCeEEEEEEEcC
Confidence 6889999999887521 11122 124689999744 4579998877654
No 52
>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only]
Probab=75.35 E-value=25 Score=33.29 Aligned_cols=89 Identities=21% Similarity=0.260 Sum_probs=59.9
Q ss_pred CcccEEEecCC------CCcccccccccccccccCCCCceEEEEEEEecCCCCCceeeecCCCCCCCCCCCcccccccCC
Q 023050 161 GEGLQVLHYEA------GQKYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGK 234 (288)
Q Consensus 161 ~E~lqv~rY~~------G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLND~~eGGeT~Fp~~~~~~s~~~~~~~~~~c~~ 234 (288)
.+-++++||.. ++.-+.|.|+. .+|++ +.| ..||--+.+...
T Consensus 173 ~~~~RLlrYP~~~~~~~~~~~GaHtD~G------------~lTLl--~Qd-~~~GLqv~~~~g----------------- 220 (322)
T COG3491 173 NSVLRLLRYPSRPAREGADGVGAHTDYG------------LLTLL--FQD-DVGGLEVRPPNG----------------- 220 (322)
T ss_pred hheEEEEecCCCcccccccccccccCCC------------eEEEE--Eec-ccCCeEEecCCC-----------------
Confidence 46799999993 44557898874 34554 333 457776776532
Q ss_pred cCeEEeCCCceEEEEec----CCCCCCCCCCCcccccccccccEEEEEEeee
Q 023050 235 TGLSIKPKMGDALLFWS----MKPDASLDPSSLHGGCPVIKGNKWSSTKWIR 282 (288)
Q Consensus 235 ~~l~V~Pk~G~alvF~n----~~~~g~~D~~~lH~g~PV~~G~K~i~~~W~~ 282 (288)
+.+.|.|..|..+|..- ..-+ ..-..+.|+++-...=+||++--++.
T Consensus 221 ~Wl~v~P~pgtlvVNiGdmLe~~Tn-g~lrST~HRV~~~~~~~R~SipfF~~ 271 (322)
T COG3491 221 GWLDVPPIPGTLVVNIGDMLERWTN-GRLRSTVHRVRNPPGVDRYSIPFFLE 271 (322)
T ss_pred CeeECCCCCCeEEEeHHHHHHHHhC-CeeccccceeecCCCccceeeeeecc
Confidence 57999999999999752 1112 22357899999775438888765543
No 53
>PF10014 2OG-Fe_Oxy_2: 2OG-Fe dioxygenase; InterPro: IPR018724 Members of this family of hypothetical bacterial proteins have no known function. Some are described as putative biofilm formation or putative agglutination proteins. ; PDB: 3PL0_B.
Probab=75.14 E-value=6.5 Score=34.44 Aligned_cols=99 Identities=17% Similarity=0.144 Sum_probs=52.6
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCcc----cEEEecCC--CC-----cccccccccccccccCCCCceEEEEEEEecCCCCC
Q 023050 140 DKIIRDIEKRIADFTFFPLENGEG----LQVLHYEA--GQ-----KYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVEEG 208 (288)
Q Consensus 140 d~vv~~i~~ri~~~~~~p~~~~E~----lqv~rY~~--G~-----~y~~H~D~~~~~~~~~~~~~R~~T~liYLND~~eG 208 (288)
+++++.|.....++++......++ ++-.|+.. ++ -=+.|.|+. ..++..++--+++ +|
T Consensus 70 ~~~~~~ll~~~~~~~~~~~~~~~~~~i~vHq~Ri~a~~~~~g~ptPEGiH~DG~----------d~v~~~li~r~Ni-~G 138 (195)
T PF10014_consen 70 NPVLQALLRFDAEIFGWDEDSSEPWHIGVHQIRIIATPDEPGEPTPEGIHRDGV----------DFVFIHLINRHNI-EG 138 (195)
T ss_dssp SHHHHHHHHHHHHHHHCCS-GGGEEEEEEEEEEEETTTS--B--STTSSB--SS----------SEEEEEEEEEESE-EE
T ss_pred CHHHHHHHHHHHHHhcccccCCCCEEEEEEEEEEEEecCccCCcCCCCccCCCC----------CEEEEEEEcCCCc-cC
Confidence 456677766666665544312223 33345443 22 125566654 4566777777666 79
Q ss_pred ceeeecCCCCCCCCCCCcccccccCCcCeEEeCCCceEEEEecCCCCCCCCCCCccccccccc
Q 023050 209 GETVFPNAQGNISAVPWWNELSECGKTGLSIKPKMGDALLFWSMKPDASLDPSSLHGGCPVIK 271 (288)
Q Consensus 209 GeT~Fp~~~~~~s~~~~~~~~~~c~~~~l~V~Pk~G~alvF~n~~~~g~~D~~~lH~g~PV~~ 271 (288)
|+|.....+.. ......--..|+.+++. |.+.+|.+.||..
T Consensus 139 G~s~i~~~~~~--------------~~~~~~l~~p~d~l~~~--------D~~~~H~vtpI~~ 179 (195)
T PF10014_consen 139 GESQIYDNDKE--------------ILFFFTLLEPGDTLLVD--------DRRVWHYVTPIRP 179 (195)
T ss_dssp --EEEEETTSS--------------EEEEE---STTEEEEEE--------TTTEEEEE--EEE
T ss_pred ceEEEEeCCCC--------------cceEEEecCCCCEEEEe--------CCcceECCCceec
Confidence 99988654321 11233455679999985 7899999999974
No 54
>PLN02403 aminocyclopropanecarboxylate oxidase
Probab=75.13 E-value=32 Score=32.22 Aligned_cols=87 Identities=17% Similarity=0.142 Sum_probs=51.5
Q ss_pred cEEEecCCC----Cc--ccccccccccccccCCCCceEEEEEEEecCCCCCceeeecCCCCCCCCCCCcccccccCCcCe
Q 023050 164 LQVLHYEAG----QK--YEPHFDYFMDEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTGL 237 (288)
Q Consensus 164 lqv~rY~~G----~~--y~~H~D~~~~~~~~~~~~~R~~T~liYLND~~eGGeT~Fp~~~~~~s~~~~~~~~~~c~~~~l 237 (288)
+++++|.+- .. ..+|.|+. .+|+|+. |...|| +..... ...+
T Consensus 155 lrl~~YP~~~~~~~~~G~~~HtD~g------------~lTlL~q--~~~v~G-LqV~~~-----------------g~Wi 202 (303)
T PLN02403 155 TKVAKYPECPRPELVRGLREHTDAG------------GIILLLQ--DDQVPG-LEFLKD-----------------GKWV 202 (303)
T ss_pred eeeEcCCCCCCcccccCccCccCCC------------eEEEEEe--cCCCCc-eEeccC-----------------CeEE
Confidence 789999752 12 45788864 3565543 322344 443221 1478
Q ss_pred EEeCCCce-EEEEec----CCCCCCCCCCCcccccccccccEEEEEEeeee
Q 023050 238 SIKPKMGD-ALLFWS----MKPDASLDPSSLHGGCPVIKGNKWSSTKWIRV 283 (288)
Q Consensus 238 ~V~Pk~G~-alvF~n----~~~~g~~D~~~lH~g~PV~~G~K~i~~~W~~~ 283 (288)
.|.|..|+ .||--- ...|| .-..+.|++-....+.||++.-+++-
T Consensus 203 ~V~p~p~~~lvVNvGD~L~~~Tng-~~~S~~HRVv~~~~~~R~Si~~F~~p 252 (303)
T PLN02403 203 PIPPSKNNTIFVNTGDQLEVLSNG-RYKSTLHRVMADKNGSRLSIATFYNP 252 (303)
T ss_pred ECCCCCCCEEEEEehHHHHHHhCC-eeecccceeecCCCCCEEEEEEEEcC
Confidence 89999864 444310 11122 22567999986667789999877764
No 55
>COG4340 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=74.88 E-value=7.6 Score=34.10 Aligned_cols=51 Identities=29% Similarity=0.494 Sum_probs=33.0
Q ss_pred EEEecCCC--CCceeeecCCCCCCCCCCCcccccccCCcCeEEeCCCceEEEEecCCCCCCCCCCCccccccccc
Q 023050 199 LMYLSDVE--EGGETVFPNAQGNISAVPWWNELSECGKTGLSIKPKMGDALLFWSMKPDASLDPSSLHGGCPVIK 271 (288)
Q Consensus 199 liYLND~~--eGGeT~Fp~~~~~~s~~~~~~~~~~c~~~~l~V~Pk~G~alvF~n~~~~g~~D~~~lH~g~PV~~ 271 (288)
.+++-|-+ .||||..+..+.. +-+..---..|.+++-. |++.+|.+||+..
T Consensus 149 ~I~~vDR~NI~gGet~lY~~~~~--------------~p~f~kvl~pGe~~~l~--------Dh~~~H~~tpi~p 201 (226)
T COG4340 149 IIMLVDRQNIDGGETDLYAPDGA--------------SPGFFKVLAPGEAVFLD--------DHRVLHGVTPIVP 201 (226)
T ss_pred EEEEeeeccccCceEEEEccCCC--------------CcceEEeccCCcEEEec--------cchhcccccceec
Confidence 34444533 6999999865421 12344445567777653 7899999999864
No 56
>PLN02156 gibberellin 2-beta-dioxygenase
Probab=74.06 E-value=41 Score=31.95 Aligned_cols=87 Identities=15% Similarity=0.195 Sum_probs=55.2
Q ss_pred ccEEEecCCCC------c--ccccccccccccccCCCCceEEEEEEEecCCCCCceeeecCCCCCCCCCCCcccccccCC
Q 023050 163 GLQVLHYEAGQ------K--YEPHFDYFMDEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGK 234 (288)
Q Consensus 163 ~lqv~rY~~G~------~--y~~H~D~~~~~~~~~~~~~R~~T~liYLND~~eGGeT~Fp~~~~~~s~~~~~~~~~~c~~ 234 (288)
.+++.+|.+.. . -.+|.|+. .+|+|+. | ..||==+.... .
T Consensus 179 ~lRl~~YP~~~~~~~~~~~g~~~HTD~g------------~lTlL~Q--d-~v~GLQV~~~~-----------------g 226 (335)
T PLN02156 179 CLRMNHYPEKEETPEKVEIGFGEHTDPQ------------LISLLRS--N-DTAGLQICVKD-----------------G 226 (335)
T ss_pred eEeEEeCCCCCCCccccccCCCCccCCC------------ceEEEEe--C-CCCceEEEeCC-----------------C
Confidence 58899998632 1 34688853 5777754 3 23553333221 2
Q ss_pred cCeEEeCCCceEEEEec----CCCCCCCCCCCcccccccccccEEEEEEeee
Q 023050 235 TGLSIKPKMGDALLFWS----MKPDASLDPSSLHGGCPVIKGNKWSSTKWIR 282 (288)
Q Consensus 235 ~~l~V~Pk~G~alvF~n----~~~~g~~D~~~lH~g~PV~~G~K~i~~~W~~ 282 (288)
..+.|.|..|..||--- ..-||. -..+.|++......+||++.-+++
T Consensus 227 ~Wi~Vpp~pga~VVNiGD~l~~wTNg~-~kSt~HRVv~~~~~~R~SiafF~~ 277 (335)
T PLN02156 227 TWVDVPPDHSSFFVLVGDTLQVMTNGR-FKSVKHRVVTNTKRSRISMIYFAG 277 (335)
T ss_pred CEEEccCCCCcEEEEhHHHHHHHhCCe-eeccceeeecCCCCCEEEEEEeec
Confidence 47899999999888531 112222 257899998766668999887765
No 57
>PLN02393 leucoanthocyanidin dioxygenase like protein
Probab=73.76 E-value=37 Score=32.52 Aligned_cols=88 Identities=19% Similarity=0.105 Sum_probs=52.9
Q ss_pred ccEEEecCCC------CcccccccccccccccCCCCceEEEEEEEecCCCCCceeeecCCCCCCCCCCCcccccccCCcC
Q 023050 163 GLQVLHYEAG------QKYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTG 236 (288)
Q Consensus 163 ~lqv~rY~~G------~~y~~H~D~~~~~~~~~~~~~R~~T~liYLND~~eGGeT~Fp~~~~~~s~~~~~~~~~~c~~~~ 236 (288)
.+++.+|.+. -.-.+|.|+. .+|+|+. |...||==+... ...
T Consensus 214 ~lRl~~YP~~p~~~~~~g~~~HtD~g------------~lTlL~q--~~~v~GLQV~~~------------------g~W 261 (362)
T PLN02393 214 CLRVNYYPKCPQPDLTLGLSPHSDPG------------GMTILLP--DDNVAGLQVRRD------------------DAW 261 (362)
T ss_pred eeeeeecCCCCCcccccccccccCCc------------eEEEEee--CCCCCcceeeEC------------------CEE
Confidence 5788889652 1256788864 4566643 333355444422 147
Q ss_pred eEEeCCCceEEEEec----CCCCCCCCCCCcccccccccccEEEEEEeeee
Q 023050 237 LSIKPKMGDALLFWS----MKPDASLDPSSLHGGCPVIKGNKWSSTKWIRV 283 (288)
Q Consensus 237 l~V~Pk~G~alvF~n----~~~~g~~D~~~lH~g~PV~~G~K~i~~~W~~~ 283 (288)
+.|.|..|.+||--- ..-|| .-..++|++......+||++.-+++-
T Consensus 262 ~~V~p~pgalVVNiGD~l~~~Tng-~~kSt~HRVv~~~~~~R~SiafF~~P 311 (362)
T PLN02393 262 ITVKPVPDAFIVNIGDQIQVLSNA-IYKSVEHRVIVNSAKERVSLAFFYNP 311 (362)
T ss_pred EECCCCCCeEEEEcchhhHhhcCC-eeeccceecccCCCCCEEEEEEEecC
Confidence 889999998887531 11122 12468999964444579998887764
No 58
>PLN02704 flavonol synthase
Probab=72.85 E-value=17 Score=34.49 Aligned_cols=87 Identities=16% Similarity=0.117 Sum_probs=53.4
Q ss_pred ccEEEecCCCC------cccccccccccccccCCCCceEEEEEEEecCCCCCceeeecCCCCCCCCCCCcccccccCCcC
Q 023050 163 GLQVLHYEAGQ------KYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTG 236 (288)
Q Consensus 163 ~lqv~rY~~G~------~y~~H~D~~~~~~~~~~~~~R~~T~liYLND~~eGGeT~Fp~~~~~~s~~~~~~~~~~c~~~~ 236 (288)
-+++.+|.+.. ...+|.|+. .+|+|+- |. .||==+... ...
T Consensus 200 ~lrl~~YP~~~~~~~~~g~~~HtD~g------------~lTlL~q--d~-v~GLQV~~~------------------g~W 246 (335)
T PLN02704 200 LLKINYYPPCPRPDLALGVVAHTDMS------------AITILVP--NE-VQGLQVFRD------------------DHW 246 (335)
T ss_pred hhhhhcCCCCCCcccccCccCccCCc------------ceEEEec--CC-CCceeEeEC------------------CEE
Confidence 36778888621 245788864 4677655 32 345334321 147
Q ss_pred eEEeCCCceEEEEec----CCCCCCCCCCCcccccccccccEEEEEEeeee
Q 023050 237 LSIKPKMGDALLFWS----MKPDASLDPSSLHGGCPVIKGNKWSSTKWIRV 283 (288)
Q Consensus 237 l~V~Pk~G~alvF~n----~~~~g~~D~~~lH~g~PV~~G~K~i~~~W~~~ 283 (288)
+.|+|..|.+||--- ..-|| .-..++|++......+||++.-+++-
T Consensus 247 i~V~p~pg~lvVNvGD~L~~~TNg-~~kSt~HRVv~~~~~~R~Si~~F~~p 296 (335)
T PLN02704 247 FDVKYIPNALVIHIGDQIEILSNG-KYKSVLHRTTVNKEKTRMSWPVFLEP 296 (335)
T ss_pred EeCCCCCCeEEEEechHHHHHhCC-eeecccceeecCCCCCeEEEEEEecC
Confidence 889999998877531 11112 12468999975545679998887764
No 59
>PLN03178 leucoanthocyanidin dioxygenase; Provisional
Probab=72.61 E-value=31 Score=33.07 Aligned_cols=88 Identities=15% Similarity=0.066 Sum_probs=54.0
Q ss_pred ccEEEecCCC----C--cccccccccccccccCCCCceEEEEEEEecCCCCCceeeecCCCCCCCCCCCcccccccCCcC
Q 023050 163 GLQVLHYEAG----Q--KYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTG 236 (288)
Q Consensus 163 ~lqv~rY~~G----~--~y~~H~D~~~~~~~~~~~~~R~~T~liYLND~~eGGeT~Fp~~~~~~s~~~~~~~~~~c~~~~ 236 (288)
.+++.+|.+. . .-.+|.|+. .+|+|+. | ..||==+... ...
T Consensus 212 ~lrl~~YP~~~~~~~~~g~~~HTD~g------------~lTlL~q--d-~v~GLQV~~~------------------g~W 258 (360)
T PLN03178 212 QMKINYYPRCPQPDLALGVEAHTDVS------------ALTFILH--N-MVPGLQVLYE------------------GKW 258 (360)
T ss_pred hhheeccCCCCCCccccCcCCccCCC------------ceEEEee--C-CCCceeEeEC------------------CEE
Confidence 4788899752 1 246788864 5787743 3 2344333321 147
Q ss_pred eEEeCCCceEEEEec----CCCCCCCCCCCcccccccccccEEEEEEeeeec
Q 023050 237 LSIKPKMGDALLFWS----MKPDASLDPSSLHGGCPVIKGNKWSSTKWIRVN 284 (288)
Q Consensus 237 l~V~Pk~G~alvF~n----~~~~g~~D~~~lH~g~PV~~G~K~i~~~W~~~~ 284 (288)
+.|+|..|.+||--- ..-|| .-..++|++..-..+.||++.-+++-+
T Consensus 259 i~V~p~pg~lvVNiGD~L~~~TNG-~~kSt~HRVv~~~~~~R~Si~~F~~P~ 309 (360)
T PLN03178 259 VTAKCVPDSIVVHIGDTLEILSNG-RYKSILHRGLVNKEKVRISWAVFCEPP 309 (360)
T ss_pred EEcCCCCCeEEEEccHHHHHHhCC-ccccccceeecCCCCCeEEEEEEecCC
Confidence 899999998877421 01122 225789998544455799998887654
No 60
>PHA02985 hypothetical protein; Provisional
Probab=72.54 E-value=38 Score=31.21 Aligned_cols=106 Identities=16% Similarity=0.199 Sum_probs=75.1
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCcccEEEecCCCCcccccccccccccccCCCCceEEEEEEEecCCCCCceeeecCCCCC
Q 023050 140 DKIIRDIEKRIADFTFFPLENGEGLQVLHYEAGQKYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGN 219 (288)
Q Consensus 140 d~vv~~i~~ri~~~~~~p~~~~E~lqv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLND~~eGGeT~Fp~~~~~ 219 (288)
..+...|++++.+ ++-..+.+++..|+.|+.|.- .+ ..+...+++-+.....||..+..+-..
T Consensus 39 ~~I~~EI~~~i~E----~V~~~n~i~i~~f~~~~~~~~-~~-----------~~~~SkilICiqsAkkGG~iIi~~~~~- 101 (271)
T PHA02985 39 KIILDEIEQYIDE----TVLVKNLISIEVFNKKKKYYQ-NI-----------PSRLSKIIICIQSAKKGGCIIIINNIT- 101 (271)
T ss_pred hHHHHHHHHhcCC----eEEecceeEEEEEcCCcceEe-eC-----------CCCceeEEEEEeecccCCEEEEecccc-
Confidence 4577777777743 222346799999998866422 11 236678999999999999998854211
Q ss_pred CCCCCCcccccccCCcCeEEeCCCceEEEEecCCCCCCCCCCCcccccccccccEEEEEEeeeecc
Q 023050 220 ISAVPWWNELSECGKTGLSIKPKMGDALLFWSMKPDASLDPSSLHGGCPVIKGNKWSSTKWIRVNE 285 (288)
Q Consensus 220 ~s~~~~~~~~~~c~~~~l~V~Pk~G~alvF~n~~~~g~~D~~~lH~g~PV~~G~K~i~~~W~~~~~ 285 (288)
...-.++|..|.|++-. |.+-..+.+|.+|.-..+..=+..+.
T Consensus 102 --------------~~K~ii~~~~n~aVlLS---------PLs~Y~Vs~V~kGsli~i~l~idIPS 144 (271)
T PHA02985 102 --------------NNKKIITLNINHIIILS---------PLSKYTVSKVSKGSLIIIVLDIDIPS 144 (271)
T ss_pred --------------cCceEEecCCCeEEEec---------chhhceEEEecCCcEEEEEEEecCCc
Confidence 13467999999999985 57888899999998776665554443
No 61
>PF02668 TauD: Taurine catabolism dioxygenase TauD, TfdA family; InterPro: IPR003819 This family consists of TauD/TfdA taurine catabolism dioxygenases. The Escherichia coli tauD gene is required for the utilization of taurine (2-aminoethanesulphonic acid) as a sulphur source and is expressed only under conditions of sulphate starvation. TauD is an alpha-ketoglutarate-dependent dioxygenase catalyzing the oxygenolytic release of sulphite from taurine []. The 2,4-dichlorophenoxyacetic acid/alpha-ketoglutarate dioxygenase from Burkholderia sp. (strain RASC) also belongs to this family []. TfdA from Ralstonia eutropha (Alcaligenes eutrophus) is a 2,4-D monooxygenase [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3SWT_B 3R1J_A 1GVG_A 1DRT_A 1DS1_A 1DS0_A 1DRY_A 3V15_A 3PVJ_D 3V17_A ....
Probab=66.61 E-value=6.7 Score=34.61 Aligned_cols=38 Identities=21% Similarity=0.330 Sum_probs=29.6
Q ss_pred cCeEEeCCCceEEEEecCCCCCCCCCCCccccccc--ccccEEEEEEe
Q 023050 235 TGLSIKPKMGDALLFWSMKPDASLDPSSLHGGCPV--IKGNKWSSTKW 280 (288)
Q Consensus 235 ~~l~V~Pk~G~alvF~n~~~~g~~D~~~lH~g~PV--~~G~K~i~~~W 280 (288)
..+.+.-++|++++|.| .+.+|+-.+. ..|.|+..+.|
T Consensus 219 ~~~~~~~~~GDlli~dN--------~~~lHgR~~~~~~~~~R~L~R~~ 258 (258)
T PF02668_consen 219 YTYRHRWQPGDLLIWDN--------HRVLHGRTAFDDPDGDRHLLRVW 258 (258)
T ss_dssp GEEEEE--TTEEEEEET--------TTEEEEE--E-STTSSEEEEEEE
T ss_pred hcccccCCCceEEEEcC--------CeeEecCCCCCCCCCCEEEEEeC
Confidence 45778899999999998 6899999999 67899999888
No 62
>KOG4176 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.39 E-value=1.3e+02 Score=28.77 Aligned_cols=115 Identities=21% Similarity=0.280 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHhhcCCCCCCCcccEEEecCCCCcccccccccccccccCCCCceEEEEEEEecCCC--CCceeeecCCCC
Q 023050 141 KIIRDIEKRIADFTFFPLENGEGLQVLHYEAGQKYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVE--EGGETVFPNAQG 218 (288)
Q Consensus 141 ~vv~~i~~ri~~~~~~p~~~~E~lqv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLND~~--eGGeT~Fp~~~~ 218 (288)
.+.+-|.+|+-.+-.+|. .-+.+-+..|++|+.-.+|+|... ..+.+. .+.+|+|+- =|=....-...
T Consensus 190 s~~~~ii~rlv~~~~ip~-~pd~~~iN~Ye~G~~i~ph~~~~~-------F~~Pi~-slS~lSe~~m~Fg~~~~~~~~~- 259 (323)
T KOG4176|consen 190 SLFKSIIDRLVSWRVIPE-RPDQCTINFYEPGDGIPPHIDHSA-------FLDPIS-SLSFLSECTMEFGHGLLSDNIG- 259 (323)
T ss_pred hHHHHHHHHhhhhccCCC-CCCeeEEEeeCCCCCCCCCCChHH-------hcCceE-EEEeecceeEEecccccccCcc-
Confidence 467777888877766765 456789999999999999996432 223344 444577642 11111111000
Q ss_pred CCCCCCCcccccccCCcC-eEEeCCCceEEEEecCCCCCCCCCCCcccccccccccEEEEEEeeeeccc
Q 023050 219 NISAVPWWNELSECGKTG-LSIKPKMGDALLFWSMKPDASLDPSSLHGGCPVIKGNKWSSTKWIRVNEY 286 (288)
Q Consensus 219 ~~s~~~~~~~~~~c~~~~-l~V~Pk~G~alvF~n~~~~g~~D~~~lH~g~PV~~G~K~i~~~W~~~~~~ 286 (288)
.-.+ +++.-+.|.+++-.+... ....|+++|+. +|.+..++.+.++.
T Consensus 260 --------------~~~g~~s~p~~~g~~lvi~~~~a-----d~~~~~~~~~~--~kRisitfrki~~~ 307 (323)
T KOG4176|consen 260 --------------NFRGSLSLPLRYGSVLVIRGRSA-----DVAPHCIRPSR--NKRISITFRKIRPD 307 (323)
T ss_pred --------------ccccccccccccCeEEEeCCCcc-----cccccccCCCC--CceEEEEEEEeccC
Confidence 0112 667777888888875332 35679999943 57777777776654
No 63
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only]
Probab=64.43 E-value=67 Score=30.38 Aligned_cols=88 Identities=19% Similarity=0.197 Sum_probs=57.0
Q ss_pred ccEEEecCCCC------cccccccccccccccCCCCceEEEEEEEecCCCCCceeeecCCCCCCCCCCCcccccccCCcC
Q 023050 163 GLQVLHYEAGQ------KYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTG 236 (288)
Q Consensus 163 ~lqv~rY~~G~------~y~~H~D~~~~~~~~~~~~~R~~T~liYLND~~eGGeT~Fp~~~~~~s~~~~~~~~~~c~~~~ 236 (288)
-+++.+|.+.- ...+|.|.. .+|+| |.|...||-=+|.. + ...
T Consensus 177 ~~r~n~Yp~cp~pe~~lGl~~HtD~~------------~lTiL--lqd~~V~GLQv~~~-d----------------g~W 225 (322)
T KOG0143|consen 177 VMRLNYYPPCPEPELTLGLGAHTDKS------------FLTIL--LQDDDVGGLQVFTK-D----------------GKW 225 (322)
T ss_pred EEEEeecCCCcCccccccccCccCcC------------ceEEE--EccCCcCceEEEec-C----------------CeE
Confidence 68888898742 356788853 35666 45545578777751 1 257
Q ss_pred eEEeCCCceEEEEec----CCCCCCCCCCCcccccccccccEEEEEEeee
Q 023050 237 LSIKPKMGDALLFWS----MKPDASLDPSSLHGGCPVIKGNKWSSTKWIR 282 (288)
Q Consensus 237 l~V~Pk~G~alvF~n----~~~~g~~D~~~lH~g~PV~~G~K~i~~~W~~ 282 (288)
+.|+|..|..||=-- ..-|| .-...+|++......+|+++-.++-
T Consensus 226 i~V~P~p~a~vVNiGD~l~~lSNG-~ykSv~HRV~~n~~~~R~Sia~F~~ 274 (322)
T KOG0143|consen 226 IDVPPIPGAFVVNIGDMLQILSNG-RYKSVLHRVVVNGEKERISVAFFVF 274 (322)
T ss_pred EECCCCCCCEEEEcccHHhHhhCC-cccceEEEEEeCCCCceEEEEEEec
Confidence 999999976665310 11122 2346799999888778887766543
No 64
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=64.17 E-value=55 Score=30.97 Aligned_cols=91 Identities=16% Similarity=0.173 Sum_probs=54.1
Q ss_pred ccEEEecCCCC-------cccccccccccccccCCCCceEEEEEEEecCCCCCceeeecCCCCCCCCCCCcccccccCCc
Q 023050 163 GLQVLHYEAGQ-------KYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKT 235 (288)
Q Consensus 163 ~lqv~rY~~G~-------~y~~H~D~~~~~~~~~~~~~R~~T~liYLND~~eGGeT~Fp~~~~~~s~~~~~~~~~~c~~~ 235 (288)
.+++++|.+.. ...+|.|+. .+|+|+- | ..||==+..... .++..
T Consensus 183 ~lrl~~YP~~~~~~~~~~g~~~HTD~g------------~lTlL~q--d-~v~GLQV~~~~~-------------~~~g~ 234 (332)
T PLN03002 183 TMRLLRYQGISDPSKGIYACGAHSDFG------------MMTLLAT--D-GVMGLQICKDKN-------------AMPQK 234 (332)
T ss_pred heeeeeCCCCCCcccCccccccccCCC------------eEEEEee--C-CCCceEEecCCC-------------CCCCc
Confidence 47899998631 235788863 5788743 4 235644443210 01124
Q ss_pred CeEEeCCCceEEEEec----CCCCCCCCCCCcccccccccccEEEEEEeeee
Q 023050 236 GLSIKPKMGDALLFWS----MKPDASLDPSSLHGGCPVIKGNKWSSTKWIRV 283 (288)
Q Consensus 236 ~l~V~Pk~G~alvF~n----~~~~g~~D~~~lH~g~PV~~G~K~i~~~W~~~ 283 (288)
.+.|.|..|..||--- .+-|| .-..++|++..- ...||++.-+++-
T Consensus 235 Wi~Vpp~pg~~VVNiGD~L~~wTng-~~kSt~HRVv~~-~~~R~Sia~F~~p 284 (332)
T PLN03002 235 WEYVPPIKGAFIVNLGDMLERWSNG-FFKSTLHRVLGN-GQERYSIPFFVEP 284 (332)
T ss_pred EEECCCCCCeEEEEHHHHHHHHhCC-eeECcCCeecCC-CCCeeEEEEEecC
Confidence 7889999999887521 11122 124679999643 4579988777653
No 65
>KOG4459 consensus Membrane-associated proteoglycan Leprecan [Function unknown]
Probab=60.03 E-value=1.7 Score=42.86 Aligned_cols=72 Identities=28% Similarity=0.352 Sum_probs=53.1
Q ss_pred CceEEEEEEEecCCCCCceeeecCCCCCCCCCCCcccccccCCcCeEEeCCCceEEEEecCCCCCCCCCCCccccccccc
Q 023050 192 GQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTGLSIKPKMGDALLFWSMKPDASLDPSSLHGGCPVIK 271 (288)
Q Consensus 192 ~~R~~T~liYLND~~eGGeT~Fp~~~~~~s~~~~~~~~~~c~~~~l~V~Pk~G~alvF~n~~~~g~~D~~~lH~g~PV~~ 271 (288)
+-+.....+|+||+++||+..|...+.. .....++|+-|+.+-|.+-. .-.|+..+|++
T Consensus 364 ~~~~~~a~~~~~dd~~~~el~~t~~d~~--------------t~~a~~k~~~~re~~~~~g~-------e~~~~~~~~~k 422 (471)
T KOG4459|consen 364 TELDYFALLYLNDDFEGGELLFTEPDAK--------------TYTAISKPECGRECAFSSGA-------ENPHGVKAVTK 422 (471)
T ss_pred HHHHhhccHhhcCccccccceecCCccc--------------chhhccccccccchhhhccc-------cCccchhhhhh
Confidence 4567889999999999999999653221 13567899999999887532 44689999999
Q ss_pred ccEEEEEEeeeec
Q 023050 272 GNKWSSTKWIRVN 284 (288)
Q Consensus 272 G~K~i~~~W~~~~ 284 (288)
|.+=.+--|....
T Consensus 423 g~e~~~~lw~~~~ 435 (471)
T KOG4459|consen 423 GLECAVALWPTLA 435 (471)
T ss_pred hhHHhhhcCcccC
Confidence 8766666665543
No 66
>cd00250 CAS_like Clavaminic acid synthetase (CAS) -like; CAS is a trifunctional Fe(II)/ 2-oxoglutarate (2OG) oxygenase carrying out three reactions in the biosynthesis of clavulanic acid, an inhibitor of class A serine beta-lactamases. In general, Fe(II)-2OG oxygenases catalyze a hydroxylation reaction, which leads to the incorporation of an oxygen atom from dioxygen into a hydroxyl group and conversion of 2OG to succinate and CO2
Probab=53.59 E-value=20 Score=32.31 Aligned_cols=40 Identities=28% Similarity=0.543 Sum_probs=33.8
Q ss_pred cCeEEeCCCceEEEEecCCCCCCCCCCCccccccccc---ccEEEEEEeee
Q 023050 235 TGLSIKPKMGDALLFWSMKPDASLDPSSLHGGCPVIK---GNKWSSTKWIR 282 (288)
Q Consensus 235 ~~l~V~Pk~G~alvF~n~~~~g~~D~~~lH~g~PV~~---G~K~i~~~W~~ 282 (288)
..+.++-++|++|+|.| .+++|+-.+-.. +.||....|+.
T Consensus 218 ~~~~~~l~~Gdivi~DN--------~r~lHgR~~f~~~~~~~R~L~r~~i~ 260 (262)
T cd00250 218 NQLTVKLEPGDLLIFDN--------RRVLHGRTAFSPRYGGDRWLKGCYVD 260 (262)
T ss_pred hEEEEEcCCCCEEEEec--------hhhhcCCCCCCCCCCCceEEEEEEec
Confidence 46789999999999998 689999988654 57999999875
No 67
>PF13677 MotB_plug: Membrane MotB of proton-channel complex MotA/MotB
Probab=52.88 E-value=38 Score=23.68 Aligned_cols=24 Identities=21% Similarity=0.069 Sum_probs=12.2
Q ss_pred CCCCCCCCCCCCCCchHHHHHHHH
Q 023050 1 MAKPRYSRFPTRKSSSSTLILTLL 24 (288)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~ 24 (288)
|+|.|..+-.......+.+.++=|
T Consensus 1 Makkk~~~~~~~~~~~WlvtyaDl 24 (58)
T PF13677_consen 1 MAKKKKKEEEEEGSPRWLVTYADL 24 (58)
T ss_pred CCCCCCCCCCCCCCccHHHHHHHH
Confidence 777776333344444554444433
No 68
>KOG1971 consensus Lysyl hydroxylase [Posttranslational modification, protein turnover, chaperones]
Probab=39.24 E-value=35 Score=33.43 Aligned_cols=75 Identities=23% Similarity=0.376 Sum_probs=49.9
Q ss_pred CceEEEEEEEecCCCCCceeeecCCCCCCCCC--CCcccccccCCcCeEEeCCCceEEEEecCCCCCCCCCCCccccccc
Q 023050 192 GQRMATVLMYLSDVEEGGETVFPNAQGNISAV--PWWNELSECGKTGLSIKPKMGDALLFWSMKPDASLDPSSLHGGCPV 269 (288)
Q Consensus 192 ~~R~~T~liYLND~~eGGeT~Fp~~~~~~s~~--~~~~~~~~c~~~~l~V~Pk~G~alvF~n~~~~g~~D~~~lH~g~PV 269 (288)
..|..|+.+||.+..+||+..|-....+.... .-|.-+..|. .-|-+++.++ .+.|...+.
T Consensus 280 ~~~e~~l~v~l~nq~~gG~L~~~~~~~~~h~~~~~~~EiFdn~h--------~p~qa~LHrg---------~~~~~a~~~ 342 (415)
T KOG1971|consen 280 DAREVGLFVCLSNQFEGGELLFTGKYCTKHLRTDDLWEIFDNSH--------DPGQAYLHRG---------YHKHGARAT 342 (415)
T ss_pred chhhcceeEEecccccCCeeEeeccccccccCCCchhhhccCcC--------CCccceecCc---------chhcccccc
Confidence 46899999999999999999997764432211 2244444442 2466778775 566666666
Q ss_pred ccccEEEEEEeeee
Q 023050 270 IKGNKWSSTKWIRV 283 (288)
Q Consensus 270 ~~G~K~i~~~W~~~ 283 (288)
..|..+.-..|+..
T Consensus 343 ~~~~~~~nv~~~~~ 356 (415)
T KOG1971|consen 343 IVGQPCPNVYWFPI 356 (415)
T ss_pred CCCCCCCceeeehh
Confidence 66666666667654
No 69
>TIGR02223 ftsN cell division protein FtsN. FtsN is a poorly conserved protein active in cell division in a number of Proteobacteria. The N-terminal 30 residue region tends to by Lys/Arg-rich, and is followed by a membrane-spanning region. This is followed by an acidic low-complexity region of variable length and a well-conserved C-terminal domain of two tandem regions matched by Pfam model pfam05036 (Sporulation related repeat), found in several cell division and sporulation proteins. The role of FtsN as a suppressor for other cell division mutations is poorly understood; it may involve cell wall hydrolysis.
Probab=36.56 E-value=1.2e+02 Score=28.42 Aligned_cols=33 Identities=21% Similarity=0.399 Sum_probs=19.6
Q ss_pred CcceEEEEecCCCEEEEcCC--------------CCHHHHHHHHHHh
Q 023050 73 AEQWVEVISWEPRAFVYHNF--------------LSKEECEYLINLA 105 (288)
Q Consensus 73 ~~~~~e~ls~~P~i~vi~nf--------------Ls~~EC~~Li~~a 105 (288)
.+.|..+-.++.+-+.+++- ||+++-+.|-..-
T Consensus 80 eE~w~YikeLe~r~v~v~~~~~~~~~~~~~~~~~lt~eq~q~leq~~ 126 (298)
T TIGR02223 80 EERWSYIEELEAREVLINDPEEPSNGGGVEESAQLTAEQRQLLEQMQ 126 (298)
T ss_pred cccccccccccCcccccCCccccccccccccccccCHHHHHHHHHHH
Confidence 35566666666666666664 5666666555543
No 70
>PRK09965 3-phenylpropionate dioxygenase ferredoxin subunit; Provisional
Probab=33.63 E-value=83 Score=24.26 Aligned_cols=49 Identities=14% Similarity=0.171 Sum_probs=32.0
Q ss_pred EEEEEecCCCCCceeeecCCCCCCCCCCCcccccccCCcCeEEeCCCceEEEEecCCCCCCCCCCCcccccccccc
Q 023050 197 TVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTGLSIKPKMGDALLFWSMKPDASLDPSSLHGGCPVIKG 272 (288)
Q Consensus 197 T~liYLND~~eGGeT~Fp~~~~~~s~~~~~~~~~~c~~~~l~V~Pk~G~alvF~n~~~~g~~D~~~lH~g~PV~~G 272 (288)
+.+.-++|..+|+...|... ..+.|.-..|....|.| ...|.++|+..|
T Consensus 4 ~~v~~~~~l~~g~~~~~~~~------------------~~i~v~~~~g~~~A~~~---------~CpH~g~~L~~G 52 (106)
T PRK09965 4 IYACPVADLPEGEALRVDTS------------------PVIALFNVGGEFYAIDD---------RCSHGNASLSEG 52 (106)
T ss_pred EEeeeHHHcCCCCeEEEeCC------------------CeEEEEEECCEEEEEeC---------cCCCCCCCCCce
Confidence 34556778878877777532 12445445777777754 788889888544
No 71
>cd03528 Rieske_RO_ferredoxin Rieske non-heme iron oxygenase (RO) family, Rieske ferredoxin component; composed of the Rieske ferredoxin component of some three-component RO systems including biphenyl dioxygenase (BPDO) and carbazole 1,9a-dioxygenase (CARDO). The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms. These enzymes enable microorganisms to tolerate and even exclusively utilize aromatic compounds for growth. ROs consist of two or three components: reductase, oxygenase, and ferredoxin (in some cases) components. The ferredoxin component contains either a plant-type or Rieske-type [2Fe-2S] cluster. The Rieske ferredoxin component in this family carries an electron from the RO reductase component to the terminal RO oxygenase component. BPDO degrades biphenyls and polychlorinated biphenyls. BPDO ferredoxin (BphF) has structural features consistent with a minimal and perhaps archetypical Rieske protein in that the in
Probab=33.35 E-value=76 Score=23.72 Aligned_cols=48 Identities=13% Similarity=0.163 Sum_probs=29.6
Q ss_pred EEEecCCCCCceeeecCCCCCCCCCCCcccccccCCcCeEEeCCCceEEEEecCCCCCCCCCCCcccccccccc
Q 023050 199 LMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTGLSIKPKMGDALLFWSMKPDASLDPSSLHGGCPVIKG 272 (288)
Q Consensus 199 liYLND~~eGGeT~Fp~~~~~~s~~~~~~~~~~c~~~~l~V~Pk~G~alvF~n~~~~g~~D~~~lH~g~PV~~G 272 (288)
+.-++|...|+...|.... ..+.|.-..|....|.| ...|.|+|+..|
T Consensus 4 v~~~~~l~~g~~~~~~~~g-----------------~~~~v~r~~~~~~a~~~---------~CpH~g~~L~~g 51 (98)
T cd03528 4 VCAVDELPEGEPKRVDVGG-----------------RPIAVYRVDGEFYATDD---------LCTHGDASLSEG 51 (98)
T ss_pred EEEhhhcCCCCEEEEEECC-----------------eEEEEEEECCEEEEECC---------cCCCCCCCCCCC
Confidence 3446666666666664321 23444444667677754 788999998765
No 72
>PF03579 SHP: Small hydrophobic protein; InterPro: IPR005327 The small hydrophobic integral membrane protein, SH (previously designated 1A) is found to have a variety of glycosylated forms [, ]. This protein is a component of the mature respiratory syncytial virion [] where it may form complexes and appears to play a structural role.; GO: 0016020 membrane, 0016021 integral to membrane, 0048222 glycoprotein network
Probab=31.19 E-value=66 Score=22.77 Aligned_cols=29 Identities=28% Similarity=0.257 Sum_probs=21.3
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHhhccc
Q 023050 12 RKSSSSTLILTLLIMFTFAILILLAFGIL 40 (288)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 (288)
+-|.-+||++.++...+|++.+-+-.+|+
T Consensus 13 kFW~YFtLi~M~lti~~~~Iv~si~~AIL 41 (64)
T PF03579_consen 13 KFWTYFTLIFMMLTIGFFFIVTSIMAAIL 41 (64)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677799998888888777776665554
No 73
>cd03474 Rieske_T4moC Toluene-4-monooxygenase effector protein complex (T4mo), Rieske ferredoxin subunit; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. T4mo is a four-protein complex that catalyzes the NADH- and O2-dependent hydroxylation of toluene to form p-cresol. T4mo consists of an NADH oxidoreductase (T4moF), a diiron hydroxylase (T4moH), a catalytic effector protein (T4moD), and a Rieske ferredoxin (T4moC). T4moC contains a Rieske domain and functions as an obligate electron carrier between T4moF and T4moH. Rieske ferredoxins are found as subunits of membrane oxidase complexes, cis-dihydrodiol-forming aromatic dioxygenases, bacterial assimilatory nitrite reductases, and arsenite oxidase. Rieske ferredoxins are also found as soluble electron carriers in bacterial dioxygenase and monooxygenase complexes.
Probab=27.99 E-value=1.2e+02 Score=23.19 Aligned_cols=27 Identities=26% Similarity=0.417 Sum_probs=18.9
Q ss_pred eEEeCCCceEEEEecCCCCCCCCCCCcccccccccc
Q 023050 237 LSIKPKMGDALLFWSMKPDASLDPSSLHGGCPVIKG 272 (288)
Q Consensus 237 l~V~Pk~G~alvF~n~~~~g~~D~~~lH~g~PV~~G 272 (288)
+-++...|..-.|.| ...|+++|+..|
T Consensus 26 ~~~~~~~g~~~A~~n---------~CpH~g~~L~~g 52 (108)
T cd03474 26 LLVAPEGGEFRAFQG---------ICPHQEIPLAEG 52 (108)
T ss_pred EEEEccCCeEEEEcC---------cCCCCCCCcccC
Confidence 455666777666754 678888888765
No 74
>PF11807 DUF3328: Domain of unknown function (DUF3328); InterPro: IPR021765 This family of proteins are functionally uncharacterised. This family is only found in eukaryotes.
Probab=27.34 E-value=98 Score=26.16 Aligned_cols=8 Identities=25% Similarity=0.476 Sum_probs=4.0
Q ss_pred cccccccc
Q 023050 176 EPHFDYFM 183 (288)
Q Consensus 176 ~~H~D~~~ 183 (288)
..|.|+..
T Consensus 160 ~~H~~HC~ 167 (217)
T PF11807_consen 160 REHIDHCL 167 (217)
T ss_pred cchhHHHH
Confidence 34555544
No 75
>PRK09553 tauD taurine dioxygenase; Reviewed
Probab=27.32 E-value=40 Score=30.87 Aligned_cols=31 Identities=19% Similarity=0.220 Sum_probs=0.0
Q ss_pred ccccccccccccCCCCceEEEEEEEecCCCCCceeee
Q 023050 177 PHFDYFMDEFNTKNGGQRMATVLMYLSDVEEGGETVF 213 (288)
Q Consensus 177 ~H~D~~~~~~~~~~~~~R~~T~liYLND~~eGGeT~F 213 (288)
||.|... ....-.+++|.-+.-..+||+|.|
T Consensus 96 wHtD~sy------~~~pp~~~~L~~~~~p~~GG~T~f 126 (277)
T PRK09553 96 WHTDVTF------IETPPLGAILAAKQLPSTGGDTLW 126 (277)
T ss_pred CeecccC------eeCCCceeEEEEEecCCCCCccHh
No 76
>TIGR02410 carnitine_TMLD trimethyllysine dioxygenase. Members of this family with known function act as trimethyllysine dioxygenase, an enzyme in the pathway for carnitine biosynthesis from lysine. This enzyme is homologous to gamma-butyrobetaine,2-oxoglutarate dioxygenase, which catalyzes the last step in carnitine biosynthesis. Members of this family appear to be eukaryotic only.
Probab=27.02 E-value=60 Score=31.02 Aligned_cols=43 Identities=16% Similarity=0.308 Sum_probs=35.1
Q ss_pred cCeEEeCCCceEEEEecCCCCCCCCCCCcccccccccccEEEEEEeeeeccc
Q 023050 235 TGLSIKPKMGDALLFWSMKPDASLDPSSLHGGCPVIKGNKWSSTKWIRVNEY 286 (288)
Q Consensus 235 ~~l~V~Pk~G~alvF~n~~~~g~~D~~~lH~g~PV~~G~K~i~~~W~~~~~~ 286 (288)
..+.++-+.|++++|.| .+++|+-..-. |.||..-.++.-.+|
T Consensus 311 ~~~~~~l~pGd~vi~DN--------~rvLHgRtaf~-g~R~L~G~Y~d~D~~ 353 (362)
T TIGR02410 311 NEIEFKLRPGTVLIFDN--------WRVLHSRTSFT-GYRRMCGCYLTRDDF 353 (362)
T ss_pred cEEEEEcCCccEEEEee--------EEEeecCCCcC-CceEEEEEEEccHHH
Confidence 45778899999999998 68999999884 889888877765554
No 77
>COG4813 ThuA Trehalose utilization protein [Carbohydrate transport and metabolism]
Probab=26.86 E-value=4.6e+02 Score=23.37 Aligned_cols=15 Identities=27% Similarity=0.596 Sum_probs=11.9
Q ss_pred CeEEeCCCceEEEEe
Q 023050 236 GLSIKPKMGDALLFW 250 (288)
Q Consensus 236 ~l~V~Pk~G~alvF~ 250 (288)
+++.+--.|++..|.
T Consensus 181 g~T~rRGaG~ifYFr 195 (261)
T COG4813 181 GLTYRRGAGNIFYFR 195 (261)
T ss_pred cceeeecCccEEEeC
Confidence 678888888877775
No 78
>COG2850 Uncharacterized conserved protein [Function unknown]
Probab=26.48 E-value=1.1e+02 Score=29.70 Aligned_cols=31 Identities=26% Similarity=0.533 Sum_probs=23.0
Q ss_pred hhcCCCCCCCcccEEEecC-CCCcccccccccc
Q 023050 152 DFTFFPLENGEGLQVLHYE-AGQKYEPHFDYFM 183 (288)
Q Consensus 152 ~~~~~p~~~~E~lqv~rY~-~G~~y~~H~D~~~ 183 (288)
.|-++|--....+.|. |. +||.|++|+|...
T Consensus 109 ~FrflP~wr~ddiMIS-~a~~GGgvg~H~D~YD 140 (383)
T COG2850 109 PFRFLPDWRIDDIMIS-FAAPGGGVGPHFDQYD 140 (383)
T ss_pred HhccCccccccceEEE-EecCCCccCccccchh
Confidence 5556776566677777 66 6999999999753
No 79
>PF14927 Neurensin: Neurensin
Probab=26.15 E-value=1.2e+02 Score=25.45 Aligned_cols=11 Identities=18% Similarity=-0.028 Sum_probs=5.9
Q ss_pred CCCCCCCCchH
Q 023050 7 SRFPTRKSSSS 17 (288)
Q Consensus 7 ~~~~~~~~~~~ 17 (288)
.+.++++|++.
T Consensus 32 ~~~~~~~w~s~ 42 (140)
T PF14927_consen 32 IQPSPSRWSSV 42 (140)
T ss_pred CCCCCCCCcch
Confidence 35556665543
No 80
>cd03530 Rieske_NirD_small_Bacillus Small subunit of nitrite reductase (NirD) family, Rieske domain; composed of proteins similar to the Bacillus subtilis small subunit of assimilatory nitrite reductase containing a Rieske domain. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. Assimilatory nitrate and nitrite reductases convert nitrate through nitrite to ammonium.
Probab=25.15 E-value=1.2e+02 Score=22.77 Aligned_cols=25 Identities=16% Similarity=0.338 Sum_probs=16.7
Q ss_pred EeCCCceEEEEecCCCCCCCCCCCcccccccccc
Q 023050 239 IKPKMGDALLFWSMKPDASLDPSSLHGGCPVIKG 272 (288)
Q Consensus 239 V~Pk~G~alvF~n~~~~g~~D~~~lH~g~PV~~G 272 (288)
++...|....|.| ...|+++|+..|
T Consensus 28 ~r~~~g~~~A~~~---------~CpH~g~~L~~g 52 (98)
T cd03530 28 FRTADDEVFALEN---------RCPHKGGPLSEG 52 (98)
T ss_pred EEeCCCCEEEEcC---------cCCCCCCCccCC
Confidence 3444567666654 788888888765
No 81
>TIGR02409 carnitine_bodg gamma-butyrobetaine hydroxylase. Members of this protein family are gamma-butyrobetaine hydroxylase, both bacterial and eukarytotic. This enzyme catalyzes the last step in the conversion of lysine to carnitine. Carnitine can serve as a compatible solvent in bacteria and also participates in fatty acid metabolism.
Probab=24.05 E-value=80 Score=30.14 Aligned_cols=44 Identities=18% Similarity=0.219 Sum_probs=34.9
Q ss_pred cCeEEeCCCceEEEEecCCCCCCCCCCCcccccccc--cccEEEEEEeeeeccc
Q 023050 235 TGLSIKPKMGDALLFWSMKPDASLDPSSLHGGCPVI--KGNKWSSTKWIRVNEY 286 (288)
Q Consensus 235 ~~l~V~Pk~G~alvF~n~~~~g~~D~~~lH~g~PV~--~G~K~i~~~W~~~~~~ 286 (288)
..+..+=+.|++++|.| .+++|+..+-. .|.|+..-.++.-.+|
T Consensus 312 ~~~~~~l~pGd~vi~DN--------~rvlH~R~af~~~~~~R~L~g~Y~d~d~~ 357 (366)
T TIGR02409 312 FKFTFKLEPGDLVLFDN--------TRLLHARDAFSNPEGKRHLQGCYADWDGL 357 (366)
T ss_pred cEEEEEcCCCcEEEEec--------eEEeecCCCcCCCCCceEEEEEEEccHHH
Confidence 34678889999999998 68999998875 5788887777765544
No 82
>PF14851 FAM176: FAM176 family
Probab=21.71 E-value=70 Score=27.12 Aligned_cols=23 Identities=17% Similarity=0.284 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHhhccccCC
Q 023050 21 LTLLIMFTFAILILLAFGILSMP 43 (288)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~ 43 (288)
+++++++++++.+||.|.++.+.
T Consensus 22 ~aLYFv~gVC~GLlLtLcllV~r 44 (153)
T PF14851_consen 22 FALYFVSGVCAGLLLTLCLLVIR 44 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 56778888888888888776544
No 83
>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A ....
Probab=21.15 E-value=1.5e+02 Score=25.58 Aligned_cols=41 Identities=17% Similarity=0.157 Sum_probs=30.1
Q ss_pred cCeEEeCCCceEEEEecCCCCCCCCCCCcccccccc-cccEEEEEEeeeec
Q 023050 235 TGLSIKPKMGDALLFWSMKPDASLDPSSLHGGCPVI-KGNKWSSTKWIRVN 284 (288)
Q Consensus 235 ~~l~V~Pk~G~alvF~n~~~~g~~D~~~lH~g~PV~-~G~K~i~~~W~~~~ 284 (288)
..+.+.-..|++|+.+. ..+|.+.-.. .+.=.++|.|++.+
T Consensus 207 ~~~~~~l~pGD~LfiP~---------gWwH~V~~~~~~~~sisvn~w~~~~ 248 (251)
T PF13621_consen 207 PPYEVVLEPGDVLFIPP---------GWWHQVENLSDDDLSISVNYWFRTP 248 (251)
T ss_dssp -EEEEEEETT-EEEE-T---------T-EEEEEESTTSSCEEEEEEEEESS
T ss_pred ceeEEEECCCeEEEECC---------CCeEEEEEcCCCCeEEEEEEEeccc
Confidence 57888889999999984 7899998883 33478899999865
No 84
>PF07350 DUF1479: Protein of unknown function (DUF1479); InterPro: IPR010856 This family consists of several hypothetical Enterobacterial proteins, of around 420 residues in length. Members of this family are often known as YbiU. The function of this family is unknown.; PDB: 2CSG_A 2DBI_A 2DBN_A.
Probab=20.85 E-value=62 Score=31.90 Aligned_cols=38 Identities=26% Similarity=0.267 Sum_probs=18.8
Q ss_pred CeEEe-CCCceEEEEecCCCCCCCCCCCcccccccccccEEEEEEeee
Q 023050 236 GLSIK-PKMGDALLFWSMKPDASLDPSSLHGGCPVIKGNKWSSTKWIR 282 (288)
Q Consensus 236 ~l~V~-Pk~G~alvF~n~~~~g~~D~~~lH~g~PV~~G~K~i~~~W~~ 282 (288)
-+.|. -+.|+.|+|. .++.|++.++..|..++...++-
T Consensus 318 mv~iP~v~PGD~V~WH---------cD~iH~Vd~~h~g~~~ssV~Yip 356 (416)
T PF07350_consen 318 MVSIPDVEPGDYVFWH---------CDLIHAVDPEHNGKGDSSVMYIP 356 (416)
T ss_dssp -EE---B-TT-EEEEE---------TT--EEE--BSS-SS---EEE--
T ss_pred cccCCCCCCCCeEEEe---------CCccccccccCCCCCCCCeeEec
Confidence 45565 4689999996 58999999999998887776553
No 85
>PRK04081 hypothetical protein; Provisional
Probab=20.43 E-value=2.3e+02 Score=25.12 Aligned_cols=35 Identities=29% Similarity=0.272 Sum_probs=22.6
Q ss_pred CcceE-EEE-ecCCCEEE-----EcCCCCHHHHHHHHHHhcC
Q 023050 73 AEQWV-EVI-SWEPRAFV-----YHNFLSKEECEYLINLATP 107 (288)
Q Consensus 73 ~~~~~-e~l-s~~P~i~v-----i~nfLs~~EC~~Li~~a~~ 107 (288)
+.+++ |+. +.+-+|++ -+.+||+||+|.||+.-+.
T Consensus 59 G~YKI~eE~Ps~~Trvilr~~dG~ER~LS~eE~dkLi~eE~~ 100 (207)
T PRK04081 59 GSYKILEEYPSSETRVVLRDLDGTERVLSQEEIDKLIKEEEA 100 (207)
T ss_pred CceEeeeecCCCcceEEEecCCCcccccCHHHHHHHHHHHHH
Confidence 44544 444 33444444 2369999999999998654
No 86
>PF00355 Rieske: Rieske [2Fe-2S] domain; InterPro: IPR017941 There are multiple types of iron-sulphur clusters which are grouped into three main categories based on their atomic content: [2Fe-2S], [3Fe-4S], [4Fe-4S] (see PDOC00176 from PROSITEDOC), and other hybrid or mixed metal types. Two general types of [2Fe-2S] clusters are known and they differ in their coordinating residues. The ferredoxin-type [2Fe-2S] clusters are coordinated to the protein by four cysteine residues (see PDOC00175 from PROSITEDOC). The Rieske-type [2Fe-2S] cluster is coordinated to its protein by two cysteine residues and two histidine residues [, ]. The structure of several Rieske domains has been solved []. It contains three layers of antiparallel beta sheets forming two beta sandwiches. Both beta sandwiches share the central sheet 2. The metal-binding site is at the top of the beta sandwich formed by the sheets 2 and 3. The Fe1 iron of the Rieske cluster is coordinated by two cysteines while the other iron Fe2 is coordinated by two histidines. Two inorganic sulphide ions bridge the two iron ions forming a flat, rhombic cluster. Rieske-type iron-sulphur clusters are common to electron transfer chains of mitochondria and chloroplast and to non-haem iron oxygenase systems: The Rieske protein of the Ubiquinol-cytochrome c reductase (1.10.2.2 from EC) (also known as the bc1 complex or complex III), a complex of the electron transport chains of mitochondria and of some aerobic prokaryotes; it catalyses the oxidoreduction of ubiquinol and cytochrome c. The Rieske protein of chloroplastic plastoquinone-plastocyanin reductase (1.10.99.1 from EC) (also known as the b6f complex). It is functionally similar to the bc1 complex and catalyses the oxidoreduction of plastoquinol and cytochrome f. Bacterial naphthalene 1,2-dioxygenase subunit alpha, a component of the naphthalene dioxygenase (NDO) multicomponent enzyme system which catalyses the incorporation of both atoms of molecular oxygen into naphthalene to form cis-naphthalene dihydrodiol. Bacterial 3-phenylpropionate dioxygenase ferredoxin subunit. Bacterial toluene monoxygenase. Bacterial biphenyl dioxygenase. ; GO: 0016491 oxidoreductase activity, 0051537 2 iron, 2 sulfur cluster binding, 0055114 oxidation-reduction process; PDB: 2XRX_A 2XR8_O 2XSH_G 2XSO_I 2YFI_C 2YFL_A 2YFJ_K 1G8J_D 1G8K_D 1NYK_B ....
Probab=20.30 E-value=1.8e+02 Score=21.51 Aligned_cols=29 Identities=24% Similarity=0.511 Sum_probs=22.0
Q ss_pred CeEEeCCCceEEEEecCCCCCCCCCCCccccccccccc
Q 023050 236 GLSIKPKMGDALLFWSMKPDASLDPSSLHGGCPVIKGN 273 (288)
Q Consensus 236 ~l~V~Pk~G~alvF~n~~~~g~~D~~~lH~g~PV~~G~ 273 (288)
.+.+.-..|....|.| ...|.++|+..|.
T Consensus 26 ~v~~~~~~g~~~A~~~---------~CpH~g~~l~~~~ 54 (97)
T PF00355_consen 26 LVLVRRSDGEIYAFSN---------RCPHQGCPLSEGP 54 (97)
T ss_dssp EEEEEETTTEEEEEES---------B-TTTSBBGGCSS
T ss_pred EEEEEeCCCCEEEEEc---------cCCccceeEccee
Confidence 4566677788888875 7899999998884
Done!