BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023052
(288 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2JIJ|A Chain A, Crystal Structure Of The Apo Form Of Chlamydomonas
Reinhardtii Prolyl-4 Hydroxylase Type I
pdb|2JIJ|B Chain B, Crystal Structure Of The Apo Form Of Chlamydomonas
Reinhardtii Prolyl-4 Hydroxylase Type I
pdb|2JIJ|C Chain C, Crystal Structure Of The Apo Form Of Chlamydomonas
Reinhardtii Prolyl-4 Hydroxylase Type I
Length = 233
Score = 244 bits (624), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 119/215 (55%), Positives = 150/215 (69%), Gaps = 9/215 (4%)
Query: 74 EQW---VEVISWEPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTS 130
E+W V +SW PRAF+ NFLS EEC+Y++ A P M KS+VVD+++GKS DS +RTS
Sbjct: 16 EEWRGEVVHLSWSPRAFLLKNFLSDEECDYIVEKARPKMVKSSVVDNESGKSVDSEIRTS 75
Query: 131 SGTFLAXXXXXXXXXXXXXXADFTFFPLENGEGLQVLHYEAGQKYEPHFDYFMDEFNT-- 188
+GT+ A A T PLEN EGLQVLHY GQKYEPH+DYF D N
Sbjct: 76 TGTWFAKGEDSVISKIEKRVAQVTMIPLENHEGLQVLHYHDGQKYEPHYDYFHDPVNAGP 135
Query: 189 KNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTGLSIKPKMGDALL 248
++GGQR+ T+LMYL+ VEEGGETV PNA+ ++ W SEC K GL++KP GDAL+
Sbjct: 136 EHGGQRVVTMLMYLTTVEEGGETVLPNAEQKVTGDGW----SECAKRGLAVKPIKGDALM 191
Query: 249 FWSMKPDASLDPSSLHGGCPVIKGNKWSSTKWIRV 283
F+S+KPD S DP+SLHG CP +KG+KWS+TKWI V
Sbjct: 192 FYSLKPDGSNDPASLHGSCPTLKGDKWSATKWIHV 226
>pdb|2JIG|A Chain A, Crystal Structure Of Chlamydomonas Reinhardtii Prolyl-4
Hydroxylase Type I Complexed With Zinc And Pyridine-2,4-
Dicarboxylate
pdb|2JIG|B Chain B, Crystal Structure Of Chlamydomonas Reinhardtii Prolyl-4
Hydroxylase Type I Complexed With Zinc And Pyridine-2,4-
Dicarboxylate
Length = 224
Score = 244 bits (623), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 119/215 (55%), Positives = 150/215 (69%), Gaps = 9/215 (4%)
Query: 74 EQW---VEVISWEPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTS 130
E+W V +SW PRAF+ NFLS EEC+Y++ A P M KS+VVD+++GKS DS +RTS
Sbjct: 7 EEWRGEVVHLSWSPRAFLLKNFLSDEECDYIVEKARPKMVKSSVVDNESGKSVDSEIRTS 66
Query: 131 SGTFLAXXXXXXXXXXXXXXADFTFFPLENGEGLQVLHYEAGQKYEPHFDYFMDEFNT-- 188
+GT+ A A T PLEN EGLQVLHY GQKYEPH+DYF D N
Sbjct: 67 TGTWFAKGEDSVISKIEKRVAQVTMIPLENHEGLQVLHYHDGQKYEPHYDYFHDPVNAGP 126
Query: 189 KNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTGLSIKPKMGDALL 248
++GGQR+ T+LMYL+ VEEGGETV PNA+ ++ W SEC K GL++KP GDAL+
Sbjct: 127 EHGGQRVVTMLMYLTTVEEGGETVLPNAEQKVTGDGW----SECAKRGLAVKPIKGDALM 182
Query: 249 FWSMKPDASLDPSSLHGGCPVIKGNKWSSTKWIRV 283
F+S+KPD S DP+SLHG CP +KG+KWS+TKWI V
Sbjct: 183 FYSLKPDGSNDPASLHGSCPTLKGDKWSATKWIHV 217
>pdb|3GZE|A Chain A, Algal Prolyl 4-Hydroxylase Complexed With Zinc And
(Ser-Pro)5 Peptide Substrate
pdb|3GZE|B Chain B, Algal Prolyl 4-Hydroxylase Complexed With Zinc And
(Ser-Pro)5 Peptide Substrate
pdb|3GZE|C Chain C, Algal Prolyl 4-Hydroxylase Complexed With Zinc And
(Ser-Pro)5 Peptide Substrate
pdb|3GZE|D Chain D, Algal Prolyl 4-Hydroxylase Complexed With Zinc And
(Ser-Pro)5 Peptide Substrate
Length = 225
Score = 244 bits (623), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 119/215 (55%), Positives = 150/215 (69%), Gaps = 9/215 (4%)
Query: 74 EQW---VEVISWEPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTS 130
E+W V +SW PRAF+ NFLS EEC+Y++ A P M KS+VVD+++GKS DS +RTS
Sbjct: 8 EEWRGEVVHLSWSPRAFLLKNFLSDEECDYIVEKARPKMVKSSVVDNESGKSVDSEIRTS 67
Query: 131 SGTFLAXXXXXXXXXXXXXXADFTFFPLENGEGLQVLHYEAGQKYEPHFDYFMDEFNT-- 188
+GT+ A A T PLEN EGLQVLHY GQKYEPH+DYF D N
Sbjct: 68 TGTWFAKGEDSVISKIEKRVAQVTMIPLENHEGLQVLHYHDGQKYEPHYDYFHDPVNAGP 127
Query: 189 KNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTGLSIKPKMGDALL 248
++GGQR+ T+LMYL+ VEEGGETV PNA+ ++ W SEC K GL++KP GDAL+
Sbjct: 128 EHGGQRVVTMLMYLTTVEEGGETVLPNAEQKVTGDGW----SECAKRGLAVKPIKGDALM 183
Query: 249 FWSMKPDASLDPSSLHGGCPVIKGNKWSSTKWIRV 283
F+S+KPD S DP+SLHG CP +KG+KWS+TKWI V
Sbjct: 184 FYSLKPDGSNDPASLHGSCPTLKGDKWSATKWIHV 218
>pdb|2V4A|A Chain A, Crystal Structure Of The Semet-Labeled Prolyl-4
Hydroxylase (P4h) Type I From Green Algae Chlamydomonas
Reinhardtii.
pdb|2V4A|B Chain B, Crystal Structure Of The Semet-Labeled Prolyl-4
Hydroxylase (P4h) Type I From Green Algae Chlamydomonas
Reinhardtii.
pdb|2V4A|C Chain C, Crystal Structure Of The Semet-Labeled Prolyl-4
Hydroxylase (P4h) Type I From Green Algae Chlamydomonas
Reinhardtii.
pdb|2V4A|D Chain D, Crystal Structure Of The Semet-Labeled Prolyl-4
Hydroxylase (P4h) Type I From Green Algae Chlamydomonas
Reinhardtii
Length = 233
Score = 236 bits (603), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 117/215 (54%), Positives = 146/215 (67%), Gaps = 9/215 (4%)
Query: 74 EQW---VEVISWEPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTS 130
E+W V +SW PRAF+ NFLS EEC+Y++ A P KS+VVD+++GKS DS +RTS
Sbjct: 16 EEWRGEVVHLSWSPRAFLLKNFLSDEECDYIVEKARPKXVKSSVVDNESGKSVDSEIRTS 75
Query: 131 SGTFLAXXXXXXXXXXXXXXADFTFFPLENGEGLQVLHYEAGQKYEPHFDYFMDEFNT-- 188
+GT+ A A T PLEN EGLQVLHY GQKYEPH+DYF D N
Sbjct: 76 TGTWFAKGEDSVISKIEKRVAQVTXIPLENHEGLQVLHYHDGQKYEPHYDYFHDPVNAGP 135
Query: 189 KNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTGLSIKPKMGDALL 248
++GGQR+ T L YL+ VEEGGETV PNA+ ++ W SEC K GL++KP GDAL
Sbjct: 136 EHGGQRVVTXLXYLTTVEEGGETVLPNAEQKVTGDGW----SECAKRGLAVKPIKGDALX 191
Query: 249 FWSMKPDASLDPSSLHGGCPVIKGNKWSSTKWIRV 283
F+S+KPD S DP+SLHG CP +KG+KWS+TKWI V
Sbjct: 192 FYSLKPDGSNDPASLHGSCPTLKGDKWSATKWIHV 226
>pdb|3ITQ|A Chain A, Crystal Structure Of A Prolyl 4-Hydroxylase From Bacillus
Anthracis
pdb|3ITQ|B Chain B, Crystal Structure Of A Prolyl 4-Hydroxylase From Bacillus
Anthracis
Length = 216
Score = 133 bits (334), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 81/214 (37%), Positives = 111/214 (51%), Gaps = 30/214 (14%)
Query: 77 VEVIS--WEPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKD-SRVRTSSGT 133
+++IS EP V N LS EEC+ LI L+ KS + S G S+D + +RTSSG
Sbjct: 30 IQIISKFEEPLIVVLGNVLSDEECDELIELS-----KSKLARSKVGSSRDVNDIRTSSGA 84
Query: 134 FLAXXXXXXXXXXXXXXADFTFFPLENGEGLQVLHYEAGQKYEPHFDYFMDEFNTKNGGQ 193
FL + P +GEGL +L+YE Q+Y+ H+DYF E +
Sbjct: 85 FL--DDNELTAKIEKRISSIXNVPASHGEGLHILNYEVDQQYKAHYDYFA-EHSRSAANN 141
Query: 194 RMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTGLSIKPKMGDALLFWSMK 253
R++T++ YL+DVEEGGET FP K LS+ P+ G A+ F
Sbjct: 142 RISTLVXYLNDVEEGGETFFP-------------------KLNLSVHPRKGXAVYFEYFY 182
Query: 254 PDASLDPSSLHGGCPVIKGNKWSSTKWIRVNEYK 287
D SL+ +LHGG PV KG KW +T+W+R YK
Sbjct: 183 QDQSLNELTLHGGAPVTKGEKWIATQWVRRGTYK 216
>pdb|3AHQ|A Chain A, Hyperactive Human Ero1
Length = 465
Score = 31.6 bits (70), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 9/25 (36%), Positives = 17/25 (68%)
Query: 223 VPWWNELSECGKTGLSIKPKMGDAL 247
P+WN++S+CG+ ++KP D +
Sbjct: 82 CPFWNDISQCGRRDCAVKPAQSDEV 106
>pdb|3AHR|A Chain A, Inactive Human Ero1
Length = 465
Score = 31.2 bits (69), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 9/25 (36%), Positives = 17/25 (68%)
Query: 223 VPWWNELSECGKTGLSIKPKMGDAL 247
P+WN++S+CG+ ++KP D +
Sbjct: 82 CPFWNDISQCGRRDAAVKPAQSDEV 106
>pdb|2GEE|A Chain A, Crystal Structure Of Human Type Iii Fibronectin
Extradomain B And Domain 8
Length = 203
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 27/73 (36%), Gaps = 8/73 (10%)
Query: 161 GEGLQVLH--------YEAGQKYEPHFDYFMDEFNTKNGGQRMATVLMYLSDVEEGGETV 212
GEG+ + Y EP DY + + KNGG+ T L + V +
Sbjct: 62 GEGIPIFEDFVDSSVGYYTVTGLEPGIDYDISVYTVKNGGESTPTTLTQQTAVPPPTDLR 121
Query: 213 FPNAQGNISAVPW 225
F N + V W
Sbjct: 122 FTNIGPDTMRVTW 134
>pdb|2IXM|A Chain A, Structure Of Human Ptpa
Length = 303
Score = 28.1 bits (61), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 39/84 (46%), Gaps = 12/84 (14%)
Query: 152 DFTFFPLENGEGLQVLHYEAGQKYEPHFD--YFMDE--FNTKNGGQRMATVLMYLSDVEE 207
DF F P G + H P+ + +F+DE N + ++++++++
Sbjct: 195 DFQFLPFIWGSSQLIDH--------PYLEPRHFVDEKAVNENHKDYMFLECILFITEMKT 246
Query: 208 GGETVFPNAQGNISAVPWWNELSE 231
G N NISAVP W+++++
Sbjct: 247 GPFAEHSNQLWNISAVPSWSKVNQ 270
>pdb|2HV6|A Chain A, Crystal Structure Of The Phosphotyrosyl Phosphatase
Activator
pdb|2HV6|B Chain B, Crystal Structure Of The Phosphotyrosyl Phosphatase
Activator
pdb|2HV7|A Chain A, Crystal Structure Of Phosphotyrosyl Phosphatase Activator
Bound To Atpgammas
pdb|2HV7|B Chain B, Crystal Structure Of Phosphotyrosyl Phosphatase Activator
Bound To Atpgammas
pdb|2HV7|C Chain C, Crystal Structure Of Phosphotyrosyl Phosphatase Activator
Bound To Atpgammas
pdb|2HV7|D Chain D, Crystal Structure Of Phosphotyrosyl Phosphatase Activator
Bound To Atpgammas
pdb|2HV7|E Chain E, Crystal Structure Of Phosphotyrosyl Phosphatase Activator
Bound To Atpgammas
pdb|2HV7|F Chain F, Crystal Structure Of Phosphotyrosyl Phosphatase Activator
Bound To Atpgammas
pdb|2HV7|G Chain G, Crystal Structure Of Phosphotyrosyl Phosphatase Activator
Bound To Atpgammas
pdb|2HV7|H Chain H, Crystal Structure Of Phosphotyrosyl Phosphatase Activator
Bound To Atpgammas
Length = 323
Score = 28.1 bits (61), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 8/82 (9%)
Query: 152 DFTFFPLENGEGLQVLHYEAGQKYEPHFDYFMDE--FNTKNGGQRMATVLMYLSDVEEGG 209
DF F P G + H EP +F+DE N + ++++++++ G
Sbjct: 214 DFQFLPFIWGSSQLIDH----PYLEPR--HFVDEKAVNENHKDYMFLECILFITEMKTGP 267
Query: 210 ETVFPNAQGNISAVPWWNELSE 231
N NISAVP W+++++
Sbjct: 268 FAEHSNQLWNISAVPSWSKVNQ 289
>pdb|2G62|A Chain A, Crystal Structure Of Human Ptpa
Length = 325
Score = 27.7 bits (60), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 39/84 (46%), Gaps = 12/84 (14%)
Query: 152 DFTFFPLENGEGLQVLHYEAGQKYEPHFD--YFMDE--FNTKNGGQRMATVLMYLSDVEE 207
DF F P G + H P+ + +F+DE N + ++++++++
Sbjct: 216 DFQFLPFIWGSSQLIDH--------PYLEPRHFVDEKAVNENHKDYMFLECILFITEMKT 267
Query: 208 GGETVFPNAQGNISAVPWWNELSE 231
G N NISAVP W+++++
Sbjct: 268 GPFAEHSNQLWNISAVPSWSKVNQ 291
>pdb|3DKQ|A Chain A, Crystal Structure Of Putative Oxygenase (Yp_001051978.1)
From Shewanella Baltica Os155 At 2.26 A Resolution
pdb|3DKQ|B Chain B, Crystal Structure Of Putative Oxygenase (Yp_001051978.1)
From Shewanella Baltica Os155 At 2.26 A Resolution
pdb|3DKQ|C Chain C, Crystal Structure Of Putative Oxygenase (Yp_001051978.1)
From Shewanella Baltica Os155 At 2.26 A Resolution
Length = 243
Score = 27.7 bits (60), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 49/117 (41%), Gaps = 31/117 (26%)
Query: 169 YEAGQKYEPHFDYFMDEFNTKNGGQRM-ATVLMYLSDVE--EGGETVFPNAQGNISAVPW 225
Y+ G+ + H D + +T +G R + ++LS+ E +GGE V + G
Sbjct: 106 YQGGETFGYHIDNAIR--STPDGXIRTDLSATLFLSEPENYQGGELVIQDTYGQ------ 157
Query: 226 WNELSECGKTGLSIKPKMGDALLFWSMKPDASLDPSSLHGGCPVIKGNKWSSTKWIR 282
SIK G +L+ S SSLH PV+ G + ++ W++
Sbjct: 158 -----------QSIKLSAGSLVLYPS---------SSLHQVTPVLSGERTAAFXWLQ 194
>pdb|1MPX|A Chain A, Alpha-Amino Acid Ester Hydrolase Labeled With
Selenomethionine
pdb|1MPX|B Chain B, Alpha-Amino Acid Ester Hydrolase Labeled With
Selenomethionine
pdb|1MPX|C Chain C, Alpha-Amino Acid Ester Hydrolase Labeled With
Selenomethionine
pdb|1MPX|D Chain D, Alpha-Amino Acid Ester Hydrolase Labeled With
Selenomethionine
Length = 615
Score = 27.3 bits (59), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 178 HFDYFMDEFNTKNGGQRMATVLM--YLSDVEEGGETVFPNAQGNISAVPWWNELSE 231
+FDYF + + + G +A Y + ++ G F A G + +PWW++L+E
Sbjct: 197 NFDYFTGQLSKRGKGAGIARQGHDDYSNFLQAGSAGDFAKAAG-LEQLPWWHKLTE 251
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.131 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,286,739
Number of Sequences: 62578
Number of extensions: 324490
Number of successful extensions: 502
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 481
Number of HSP's gapped (non-prelim): 19
length of query: 288
length of database: 14,973,337
effective HSP length: 98
effective length of query: 190
effective length of database: 8,840,693
effective search space: 1679731670
effective search space used: 1679731670
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (24.3 bits)