BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023053
(288 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3GZE|A Chain A, Algal Prolyl 4-Hydroxylase Complexed With Zinc And
(Ser-Pro)5 Peptide Substrate
pdb|3GZE|B Chain B, Algal Prolyl 4-Hydroxylase Complexed With Zinc And
(Ser-Pro)5 Peptide Substrate
pdb|3GZE|C Chain C, Algal Prolyl 4-Hydroxylase Complexed With Zinc And
(Ser-Pro)5 Peptide Substrate
pdb|3GZE|D Chain D, Algal Prolyl 4-Hydroxylase Complexed With Zinc And
(Ser-Pro)5 Peptide Substrate
Length = 225
Score = 257 bits (656), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 120/215 (55%), Positives = 163/215 (75%), Gaps = 9/215 (4%)
Query: 74 EQW-TEIV--AWEPRAFVYHNFLSKAECEYLIDLAKPYMVKSTVVDSKTGQSKDSRVRTS 130
E+W E+V +W PRAF+ NFLS EC+Y+++ A+P MVKS+VVD+++G+S DS +RTS
Sbjct: 8 EEWRGEVVHLSWSPRAFLLKNFLSDEECDYIVEKARPKMVKSSVVDNESGKSVDSEIRTS 67
Query: 131 SGTFLKRGQDRIIRGIEKRIADFTFIPMEHGEGIQVLHYEVGQKYDAHYDYFLDEFNT-- 188
+GT+ +G+D +I IEKR+A T IP+E+ EG+QVLHY GQKY+ HYDYF D N
Sbjct: 68 TGTWFAKGEDSVISKIEKRVAQVTMIPLENHEGLQVLHYHDGQKYEPHYDYFHDPVNAGP 127
Query: 189 KNGGQRMATLLMYLSDVEEGGETVFPAANANFTSVRWWNELSECGKQGLSVKPKRGDALL 248
++GGQR+ T+LMYL+ VEEGGETV P A T W SEC K+GL+VKP +GDAL+
Sbjct: 128 EHGGQRVVTMLMYLTTVEEGGETVLPNAEQKVTGDGW----SECAKRGLAVKPIKGDALM 183
Query: 249 FWSMRPDATLDPSSLHGGCPVIRGNKWSATKWMHV 283
F+S++PD + DP+SLHG CP ++G+KWSATKW+HV
Sbjct: 184 FYSLKPDGSNDPASLHGSCPTLKGDKWSATKWIHV 218
>pdb|2JIG|A Chain A, Crystal Structure Of Chlamydomonas Reinhardtii Prolyl-4
Hydroxylase Type I Complexed With Zinc And Pyridine-2,4-
Dicarboxylate
pdb|2JIG|B Chain B, Crystal Structure Of Chlamydomonas Reinhardtii Prolyl-4
Hydroxylase Type I Complexed With Zinc And Pyridine-2,4-
Dicarboxylate
Length = 224
Score = 256 bits (655), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 120/215 (55%), Positives = 163/215 (75%), Gaps = 9/215 (4%)
Query: 74 EQW-TEIV--AWEPRAFVYHNFLSKAECEYLIDLAKPYMVKSTVVDSKTGQSKDSRVRTS 130
E+W E+V +W PRAF+ NFLS EC+Y+++ A+P MVKS+VVD+++G+S DS +RTS
Sbjct: 7 EEWRGEVVHLSWSPRAFLLKNFLSDEECDYIVEKARPKMVKSSVVDNESGKSVDSEIRTS 66
Query: 131 SGTFLKRGQDRIIRGIEKRIADFTFIPMEHGEGIQVLHYEVGQKYDAHYDYFLDEFNT-- 188
+GT+ +G+D +I IEKR+A T IP+E+ EG+QVLHY GQKY+ HYDYF D N
Sbjct: 67 TGTWFAKGEDSVISKIEKRVAQVTMIPLENHEGLQVLHYHDGQKYEPHYDYFHDPVNAGP 126
Query: 189 KNGGQRMATLLMYLSDVEEGGETVFPAANANFTSVRWWNELSECGKQGLSVKPKRGDALL 248
++GGQR+ T+LMYL+ VEEGGETV P A T W SEC K+GL+VKP +GDAL+
Sbjct: 127 EHGGQRVVTMLMYLTTVEEGGETVLPNAEQKVTGDGW----SECAKRGLAVKPIKGDALM 182
Query: 249 FWSMRPDATLDPSSLHGGCPVIRGNKWSATKWMHV 283
F+S++PD + DP+SLHG CP ++G+KWSATKW+HV
Sbjct: 183 FYSLKPDGSNDPASLHGSCPTLKGDKWSATKWIHV 217
>pdb|2JIJ|A Chain A, Crystal Structure Of The Apo Form Of Chlamydomonas
Reinhardtii Prolyl-4 Hydroxylase Type I
pdb|2JIJ|B Chain B, Crystal Structure Of The Apo Form Of Chlamydomonas
Reinhardtii Prolyl-4 Hydroxylase Type I
pdb|2JIJ|C Chain C, Crystal Structure Of The Apo Form Of Chlamydomonas
Reinhardtii Prolyl-4 Hydroxylase Type I
Length = 233
Score = 256 bits (655), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 120/215 (55%), Positives = 163/215 (75%), Gaps = 9/215 (4%)
Query: 74 EQW-TEIV--AWEPRAFVYHNFLSKAECEYLIDLAKPYMVKSTVVDSKTGQSKDSRVRTS 130
E+W E+V +W PRAF+ NFLS EC+Y+++ A+P MVKS+VVD+++G+S DS +RTS
Sbjct: 16 EEWRGEVVHLSWSPRAFLLKNFLSDEECDYIVEKARPKMVKSSVVDNESGKSVDSEIRTS 75
Query: 131 SGTFLKRGQDRIIRGIEKRIADFTFIPMEHGEGIQVLHYEVGQKYDAHYDYFLDEFNT-- 188
+GT+ +G+D +I IEKR+A T IP+E+ EG+QVLHY GQKY+ HYDYF D N
Sbjct: 76 TGTWFAKGEDSVISKIEKRVAQVTMIPLENHEGLQVLHYHDGQKYEPHYDYFHDPVNAGP 135
Query: 189 KNGGQRMATLLMYLSDVEEGGETVFPAANANFTSVRWWNELSECGKQGLSVKPKRGDALL 248
++GGQR+ T+LMYL+ VEEGGETV P A T W SEC K+GL+VKP +GDAL+
Sbjct: 136 EHGGQRVVTMLMYLTTVEEGGETVLPNAEQKVTGDGW----SECAKRGLAVKPIKGDALM 191
Query: 249 FWSMRPDATLDPSSLHGGCPVIRGNKWSATKWMHV 283
F+S++PD + DP+SLHG CP ++G+KWSATKW+HV
Sbjct: 192 FYSLKPDGSNDPASLHGSCPTLKGDKWSATKWIHV 226
>pdb|2V4A|A Chain A, Crystal Structure Of The Semet-Labeled Prolyl-4
Hydroxylase (P4h) Type I From Green Algae Chlamydomonas
Reinhardtii.
pdb|2V4A|B Chain B, Crystal Structure Of The Semet-Labeled Prolyl-4
Hydroxylase (P4h) Type I From Green Algae Chlamydomonas
Reinhardtii.
pdb|2V4A|C Chain C, Crystal Structure Of The Semet-Labeled Prolyl-4
Hydroxylase (P4h) Type I From Green Algae Chlamydomonas
Reinhardtii.
pdb|2V4A|D Chain D, Crystal Structure Of The Semet-Labeled Prolyl-4
Hydroxylase (P4h) Type I From Green Algae Chlamydomonas
Reinhardtii
Length = 233
Score = 248 bits (633), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 118/215 (54%), Positives = 159/215 (73%), Gaps = 9/215 (4%)
Query: 74 EQW-TEIV--AWEPRAFVYHNFLSKAECEYLIDLAKPYMVKSTVVDSKTGQSKDSRVRTS 130
E+W E+V +W PRAF+ NFLS EC+Y+++ A+P VKS+VVD+++G+S DS +RTS
Sbjct: 16 EEWRGEVVHLSWSPRAFLLKNFLSDEECDYIVEKARPKXVKSSVVDNESGKSVDSEIRTS 75
Query: 131 SGTFLKRGQDRIIRGIEKRIADFTFIPMEHGEGIQVLHYEVGQKYDAHYDYFLDEFNT-- 188
+GT+ +G+D +I IEKR+A T IP+E+ EG+QVLHY GQKY+ HYDYF D N
Sbjct: 76 TGTWFAKGEDSVISKIEKRVAQVTXIPLENHEGLQVLHYHDGQKYEPHYDYFHDPVNAGP 135
Query: 189 KNGGQRMATLLMYLSDVEEGGETVFPAANANFTSVRWWNELSECGKQGLSVKPKRGDALL 248
++GGQR+ T L YL+ VEEGGETV P A T W SEC K+GL+VKP +GDAL
Sbjct: 136 EHGGQRVVTXLXYLTTVEEGGETVLPNAEQKVTGDGW----SECAKRGLAVKPIKGDALX 191
Query: 249 FWSMRPDATLDPSSLHGGCPVIRGNKWSATKWMHV 283
F+S++PD + DP+SLHG CP ++G+KWSATKW+HV
Sbjct: 192 FYSLKPDGSNDPASLHGSCPTLKGDKWSATKWIHV 226
>pdb|3ITQ|A Chain A, Crystal Structure Of A Prolyl 4-Hydroxylase From Bacillus
Anthracis
pdb|3ITQ|B Chain B, Crystal Structure Of A Prolyl 4-Hydroxylase From Bacillus
Anthracis
Length = 216
Score = 152 bits (385), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 86/206 (41%), Positives = 116/206 (56%), Gaps = 28/206 (13%)
Query: 83 EPRAFVYHNFLSKAECEYLIDLAKPYMVKSTVVDSKTGQSKD-SRVRTSSGTFLKRGQDR 141
EP V N LS EC+ LI+L+K + +S K G S+D + +RTSSG FL +
Sbjct: 38 EPLIVVLGNVLSDEECDELIELSKSKLARS-----KVGSSRDVNDIRTSSGAFLD--DNE 90
Query: 142 IIRGIEKRIADFTFIPMEHGEGIQVLHYEVGQKYDAHYDYFLDEFNTKNGGQRMATLLMY 201
+ IEKRI+ +P HGEG+ +L+YEV Q+Y AHYDYF E + R++TL+ Y
Sbjct: 91 LTAKIEKRISSIXNVPASHGEGLHILNYEVDQQYKAHYDYFA-EHSRSAANNRISTLVXY 149
Query: 202 LSDVEEGGETVFPAANANFTSVRWWNELSECGKQGLSVKPKRGDALLFWSMRPDATLDPS 261
L+DVEEGGET FP N LSV P++G A+ F D +L+
Sbjct: 150 LNDVEEGGETFFPKLN-------------------LSVHPRKGXAVYFEYFYQDQSLNEL 190
Query: 262 SLHGGCPVIRGNKWSATKWMHVHEYK 287
+LHGG PV +G KW AT+W+ YK
Sbjct: 191 TLHGGAPVTKGEKWIATQWVRRGTYK 216
>pdb|3AHQ|A Chain A, Hyperactive Human Ero1
Length = 465
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 18/23 (78%)
Query: 225 WWNELSECGKQGLSVKPKRGDAL 247
+WN++S+CG++ +VKP + D +
Sbjct: 84 FWNDISQCGRRDCAVKPAQSDEV 106
>pdb|3AHR|A Chain A, Inactive Human Ero1
Length = 465
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 18/23 (78%)
Query: 225 WWNELSECGKQGLSVKPKRGDAL 247
+WN++S+CG++ +VKP + D +
Sbjct: 84 FWNDISQCGRRDAAVKPAQSDEV 106
>pdb|1VL7|A Chain A, Crystal Structure Of A Putative Heme Oxygenase (Alr5027)
From Nostoc Sp. Pcc 7120 At 1.50 A Resolution
pdb|1VL7|B Chain B, Crystal Structure Of A Putative Heme Oxygenase (Alr5027)
From Nostoc Sp. Pcc 7120 At 1.50 A Resolution
Length = 157
Score = 27.7 bits (60), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 9/35 (25%), Positives = 23/35 (65%)
Query: 46 DDDSPPNDLTSFRRRAFEKRSSIAEEKGEQWTEIV 80
DD++ N + + RR +F+ +++ E + ++W ++V
Sbjct: 85 DDEAKTNQIFARRRLSFDCTATLIERESQKWNQVV 119
>pdb|2Z3L|A Chain A, Complex Structure Of Lf-Transferase And Peptide A
pdb|2Z3L|B Chain B, Complex Structure Of Lf-Transferase And Peptide A
pdb|2Z3N|A Chain A, Complex Structure Of Lf-Transferase And Peptide B
pdb|2Z3N|B Chain B, Complex Structure Of Lf-Transferase And Peptide B
pdb|2Z3K|A Chain A, Complex Structure Of Lf-Transferase And Raf
pdb|2Z3K|B Chain B, Complex Structure Of Lf-Transferase And Raf
pdb|2Z3M|A Chain A, Complex Structure Of Lf-Transferase And Daf
pdb|2Z3M|B Chain B, Complex Structure Of Lf-Transferase And Daf
pdb|2Z3O|A Chain A, Complex Structure Of Lf-Transferase And Phenylalanine
pdb|2Z3O|B Chain B, Complex Structure Of Lf-Transferase And Phenylalanine
pdb|2Z3P|A Chain A, Complex Structure Of Lf-Transferase And Leucine
pdb|2Z3P|B Chain B, Complex Structure Of Lf-Transferase And Leucine
Length = 233
Score = 27.3 bits (59), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 14/21 (66%)
Query: 244 GDALLFWSMRPDATLDPSSLH 264
GD +L+WS P A L P SLH
Sbjct: 52 GDPILWWSPDPRAVLWPESLH 72
>pdb|2CXA|A Chain A, Crystal Structure Of LeucylPHENYLALANYL-Trna Protein
Transferase From Escherichia Coli
Length = 256
Score = 27.3 bits (59), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 14/21 (66%)
Query: 244 GDALLFWSMRPDATLDPSSLH 264
GD +L+WS P A L P SLH
Sbjct: 70 GDPILWWSPDPRAVLWPESLH 90
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,983,310
Number of Sequences: 62578
Number of extensions: 366440
Number of successful extensions: 731
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 706
Number of HSP's gapped (non-prelim): 16
length of query: 288
length of database: 14,973,337
effective HSP length: 98
effective length of query: 190
effective length of database: 8,840,693
effective search space: 1679731670
effective search space used: 1679731670
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)