BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023053
(288 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q20065|P4HA2_CAEEL Prolyl 4-hydroxylase subunit alpha-2 OS=Caenorhabditis elegans
GN=phy-2 PE=1 SV=1
Length = 539
Score = 132 bits (331), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 74/210 (35%), Positives = 113/210 (53%), Gaps = 23/210 (10%)
Query: 77 TEIVAWEPRAFVYHNFLSKAECEYLIDLAKPYMVKSTVVDSKTGQSKDSRVRTSSGTFLK 136
EI+ ++P A ++ N + +E E + +LA P + ++TV +SKTG+ + + R S +LK
Sbjct: 318 VEILRFDPLAVLFKNVIHDSEIEVIKELASPKLKRATVQNSKTGELEHATYRISKSAWLK 377
Query: 137 RGQDRIIRGIEKRIADFTFIPMEHGEGIQVLHYEVGQKYDAHYDYFLDE----FNTKNGG 192
D +I + +RI DFT + E +QV +Y +G YD H+D+ E F T N G
Sbjct: 378 GDLDPVIDRVNRRIEDFTNLNQATSEELQVANYGLGGHYDPHFDFARKEEKNAFKTLNTG 437
Query: 193 QRMATLLMYLSDVEEGGETVFPAANANFTSVRWWNELSECGKQGLSVKPKRGDALLFWSM 252
R+AT+L Y+S E GG TVF N L G +V P + DAL ++++
Sbjct: 438 NRIATVLFYMSQPERGGATVF-------------NHL------GTAVFPSKNDALFWYNL 478
Query: 253 RPDATLDPSSLHGGCPVIRGNKWSATKWMH 282
R D D + H CPV+ G KW + KW+H
Sbjct: 479 RRDGEGDLRTRHAACPVLLGVKWVSNKWIH 508
>sp|P54001|P4HA1_RAT Prolyl 4-hydroxylase subunit alpha-1 OS=Rattus norvegicus GN=P4ha1
PE=2 SV=2
Length = 534
Score = 131 bits (329), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 72/204 (35%), Positives = 108/204 (52%), Gaps = 23/204 (11%)
Query: 83 EPRAFVYHNFLSKAECEYLIDLAKPYMVKSTVVDSKTGQSKDSRVRTSSGTFLKRGQDRI 142
+PR +H+ +S AE E + DLAKP + ++TV D +TG+ ++ R S +L +D +
Sbjct: 334 KPRIIRFHDIISDAEIEIVKDLAKPRLSRATVHDPETGKLTTAQYRVSKSAWLSGYEDPV 393
Query: 143 IRGIEKRIADFTFIPMEHGEGIQVLHYEVGQKYDAHYDYFL----DEFNTKNGGQRMATL 198
+ I RI D T + + E +QV +Y VG +Y+ H+D+ D F G R+AT
Sbjct: 394 VSRINMRIQDLTGLDVSTAEELQVANYGVGGQYEPHFDFARKDEPDAFRELGTGNRIATW 453
Query: 199 LMYLSDVEEGGETVFPAANANFTSVRWWNELSECGKQGLSVKPKRGDALLFWSMRPDATL 258
L Y+SDV GG TVFP G SV PK+G A+ ++++
Sbjct: 454 LFYMSDVSAGGATVFPEV-------------------GASVWPKKGTAVFWYNLFASGEG 494
Query: 259 DPSSLHGGCPVIRGNKWSATKWMH 282
D S+ H CPV+ GNKW + KW+H
Sbjct: 495 DYSTRHAACPVLVGNKWVSNKWLH 518
>sp|Q60715|P4HA1_MOUSE Prolyl 4-hydroxylase subunit alpha-1 OS=Mus musculus GN=P4ha1 PE=2
SV=2
Length = 534
Score = 126 bits (316), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 70/204 (34%), Positives = 105/204 (51%), Gaps = 23/204 (11%)
Query: 83 EPRAFVYHNFLSKAECEYLIDLAKPYMVKSTVVDSKTGQSKDSRVRTSSGTFLKRGQDRI 142
+PR +H+ +S AE E + DLAKP + ++T+ + TG + R S +L +D +
Sbjct: 334 KPRIIRFHDIISDAEIEIVKDLAKPRLRRATISNPVTGALETVHYRISKSAWLSGYEDPV 393
Query: 143 IRGIEKRIADFTFIPMEHGEGIQVLHYEVGQKYDAHYDYFL----DEFNTKNGGQRMATL 198
+ I RI D T + + E +QV +Y VG +Y+ H+D+ D F G R+AT
Sbjct: 394 VSRINMRIQDLTGLDVSTAEELQVANYGVGGQYEPHFDFARKDEPDAFRELGTGNRIATW 453
Query: 199 LMYLSDVEEGGETVFPAANANFTSVRWWNELSECGKQGLSVKPKRGDALLFWSMRPDATL 258
L Y+SDV GG TVFP G SV PK+G A+ ++++
Sbjct: 454 LFYMSDVSAGGATVFPEV-------------------GASVWPKKGTAVFWYNLFASGEG 494
Query: 259 DPSSLHGGCPVIRGNKWSATKWMH 282
D S+ H CPV+ GNKW + KW+H
Sbjct: 495 DYSTRHAACPVLVGNKWVSNKWLH 518
>sp|Q5RAG8|P4HA1_PONAB Prolyl 4-hydroxylase subunit alpha-1 OS=Pongo abelii GN=P4HA1 PE=2
SV=1
Length = 534
Score = 124 bits (311), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 69/204 (33%), Positives = 105/204 (51%), Gaps = 23/204 (11%)
Query: 83 EPRAFVYHNFLSKAECEYLIDLAKPYMVKSTVVDSKTGQSKDSRVRTSSGTFLKRGQDRI 142
+PR +H+ +S AE E + DLAKP + ++T+ + TG + R S +L ++ +
Sbjct: 334 KPRIIRFHDIISDAEIEIVKDLAKPRLRRATISNPITGDLETVHYRISKSAWLSGYENPV 393
Query: 143 IRGIEKRIADFTFIPMEHGEGIQVLHYEVGQKYDAHYDYFL----DEFNTKNGGQRMATL 198
+ I RI D T + + E +QV +Y VG +Y+ H+D+ D F G R+AT
Sbjct: 394 VSRINMRIQDLTGLDVSTAEELQVANYGVGGQYEPHFDFARKDEPDAFKELGTGNRIATW 453
Query: 199 LMYLSDVEEGGETVFPAANANFTSVRWWNELSECGKQGLSVKPKRGDALLFWSMRPDATL 258
L Y+SDV GG TVFP G SV PK+G A+ ++++
Sbjct: 454 LFYMSDVSAGGATVFPEV-------------------GASVWPKKGTAVFWYNLFASGEG 494
Query: 259 DPSSLHGGCPVIRGNKWSATKWMH 282
D S+ H CPV+ GNKW + KW+H
Sbjct: 495 DYSTRHAACPVLVGNKWVSNKWLH 518
>sp|P13674|P4HA1_HUMAN Prolyl 4-hydroxylase subunit alpha-1 OS=Homo sapiens GN=P4HA1 PE=1
SV=2
Length = 534
Score = 124 bits (311), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 69/204 (33%), Positives = 105/204 (51%), Gaps = 23/204 (11%)
Query: 83 EPRAFVYHNFLSKAECEYLIDLAKPYMVKSTVVDSKTGQSKDSRVRTSSGTFLKRGQDRI 142
+PR +H+ +S AE E + DLAKP + ++T+ + TG + R S +L ++ +
Sbjct: 334 KPRIIRFHDIISDAEIEIVKDLAKPRLRRATISNPITGDLETVHYRISKSAWLSGYENPV 393
Query: 143 IRGIEKRIADFTFIPMEHGEGIQVLHYEVGQKYDAHYDYFL----DEFNTKNGGQRMATL 198
+ I RI D T + + E +QV +Y VG +Y+ H+D+ D F G R+AT
Sbjct: 394 VSRINMRIQDLTGLDVSTAEELQVANYGVGGQYEPHFDFARKDEPDAFKELGTGNRIATW 453
Query: 199 LMYLSDVEEGGETVFPAANANFTSVRWWNELSECGKQGLSVKPKRGDALLFWSMRPDATL 258
L Y+SDV GG TVFP G SV PK+G A+ ++++
Sbjct: 454 LFYMSDVSAGGATVFPEV-------------------GASVWPKKGTAVFWYNLFASGEG 494
Query: 259 DPSSLHGGCPVIRGNKWSATKWMH 282
D S+ H CPV+ GNKW + KW+H
Sbjct: 495 DYSTRHAACPVLVGNKWVSNKWLH 518
>sp|Q1RMU3|P4HA1_BOVIN Prolyl 4-hydroxylase subunit alpha-1 OS=Bos taurus GN=P4HA1 PE=1
SV=1
Length = 534
Score = 123 bits (309), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 69/204 (33%), Positives = 105/204 (51%), Gaps = 23/204 (11%)
Query: 83 EPRAFVYHNFLSKAECEYLIDLAKPYMVKSTVVDSKTGQSKDSRVRTSSGTFLKRGQDRI 142
+PR +H+ +S AE E + DLAKP + ++T+ + TG + R S +L ++ +
Sbjct: 334 KPRIIRFHDIISDAEIEVVKDLAKPRLRRATISNPITGDLETVHYRISKSAWLSGYENPV 393
Query: 143 IRGIEKRIADFTFIPMEHGEGIQVLHYEVGQKYDAHYDYFL----DEFNTKNGGQRMATL 198
+ I RI D T + + E +QV +Y VG +Y+ H+D+ D F G R+AT
Sbjct: 394 VSRINMRIQDLTGLDVSTAEELQVANYGVGGQYEPHFDFARKDEPDAFKELGTGNRIATW 453
Query: 199 LMYLSDVEEGGETVFPAANANFTSVRWWNELSECGKQGLSVKPKRGDALLFWSMRPDATL 258
L Y+SDV GG TVFP G SV PK+G A+ ++++
Sbjct: 454 LFYMSDVLAGGATVFPEV-------------------GASVWPKKGTAVFWYNLFASGEG 494
Query: 259 DPSSLHGGCPVIRGNKWSATKWMH 282
D S+ H CPV+ GNKW + KW+H
Sbjct: 495 DYSTRHAACPVLVGNKWVSNKWLH 518
>sp|P16924|P4HA1_CHICK Prolyl 4-hydroxylase subunit alpha-1 OS=Gallus gallus GN=P4HA1 PE=1
SV=1
Length = 516
Score = 122 bits (307), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 69/204 (33%), Positives = 105/204 (51%), Gaps = 23/204 (11%)
Query: 83 EPRAFVYHNFLSKAECEYLIDLAKPYMVKSTVVDSKTGQSKDSRVRTSSGTFLKRGQDRI 142
+PR + + +S E E + +LAKP + ++TV D +TG+ + R S +L + +
Sbjct: 316 KPRIVRFLDIISDEEIETVKELAKPRLSRATVHDPETGKLTTAHYRVSKSAWLSGYESPV 375
Query: 143 IRGIEKRIADFTFIPMEHGEGIQVLHYEVGQKYDAHYDYFL----DEFNTKNGGQRMATL 198
+ I RI D T + + E +QV +Y VG +Y+ H+D+ D F G R+AT
Sbjct: 376 VSRINTRIQDLTGLDVSTAEELQVANYGVGGQYEPHFDFGRKDEPDAFKELGTGNRIATW 435
Query: 199 LMYLSDVEEGGETVFPAANANFTSVRWWNELSECGKQGLSVKPKRGDALLFWSMRPDATL 258
L Y+SDV GG TVFP G SV PK+G A+ ++++ P
Sbjct: 436 LFYMSDVSAGGATVFPEV-------------------GASVWPKKGTAVFWYNLFPSGEG 476
Query: 259 DPSSLHGGCPVIRGNKWSATKWMH 282
D S+ H CPV+ GNKW + KW+H
Sbjct: 477 DYSTRHAACPVLVGNKWVSNKWLH 500
>sp|Q5ZLK5|P4HA2_CHICK Prolyl 4-hydroxylase subunit alpha-2 OS=Gallus gallus GN=P4HA2 PE=2
SV=1
Length = 534
Score = 116 bits (290), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 106/201 (52%), Gaps = 21/201 (10%)
Query: 84 PRAFVYHNFLSKAECEYLIDLAKPYMVKSTVVDSKTGQSKDSRVRTSSGTFLKRGQDRII 143
P Y++ +S E E + LAKP + ++TV D KTG + R S ++L+ D ++
Sbjct: 337 PHIVRYYDVMSDEEIEKIKQLAKPKLARATVRDPKTGVLTVASYRVSKSSWLEEDDDPVV 396
Query: 144 RGIEKRIADFTFIPMEHGEGIQVLHYEVGQKYDAHYDYFLDEFNT--KNGGQRMATLLMY 201
+ +R+ T + ++ E +QV +Y +G +Y+ H+D+ F++ K+ G R+AT L Y
Sbjct: 397 AKVNQRMQQITGLTVKTAELLQVANYGMGGQYEPHFDFSRRPFDSTLKSEGNRLATFLNY 456
Query: 202 LSDVEEGGETVFPAANANFTSVRWWNELSECGKQGLSVKPKRGDALLFWSMRPDATLDPS 261
+SDVE GG TVFP +F + W PK+G A+ ++++ D
Sbjct: 457 MSDVEAGGATVFP----DFGAAIW---------------PKKGTAVFWYNLFRSGEGDYR 497
Query: 262 SLHGGCPVIRGNKWSATKWMH 282
+ H CPV+ G KW + KW H
Sbjct: 498 TRHAACPVLVGCKWVSNKWFH 518
>sp|Q10576|P4HA1_CAEEL Prolyl 4-hydroxylase subunit alpha-1 OS=Caenorhabditis elegans
GN=dpy-18 PE=1 SV=2
Length = 559
Score = 115 bits (288), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 64/210 (30%), Positives = 105/210 (50%), Gaps = 23/210 (10%)
Query: 77 TEIVAWEPRAFVYHNFLSKAECEYLIDLAKPYMVKSTVVDSKTGQSKDSRVRTSSGTFLK 136
EI + P A ++ + +S E + +LAKP + ++TV DS TG+ + R S +LK
Sbjct: 321 VEIKRFNPLAVLFKDVISDDEVAAIQELAKPKLARATVHDSVTGKLVTATYRISKSAWLK 380
Query: 137 RGQDRIIRGIEKRIADFTFIPMEHGEGIQVLHYEVGQKYDAHYDYFLDE----FNTKNGG 192
+ ++ + KRI T + ME E +Q+ +Y +G YD H+D+ E F + G
Sbjct: 381 EWEGDVVETVNKRIGYMTNLEMETAEELQIANYGIGGHYDPHFDHAKKEESKSFESLGTG 440
Query: 193 QRMATLLMYLSDVEEGGETVFPAANANFTSVRWWNELSECGKQGLSVKPKRGDALLFWSM 252
R+AT+L Y+S GG TVF A + ++ P + DAL ++++
Sbjct: 441 NRIATVLFYMSQPSHGGGTVFTEAKS-------------------TILPTKNDALFWYNL 481
Query: 253 RPDATLDPSSLHGGCPVIRGNKWSATKWMH 282
+P + H CPV+ G KW + KW+H
Sbjct: 482 YKQGDGNPDTRHAACPVLVGIKWVSNKWIH 511
>sp|O15460|P4HA2_HUMAN Prolyl 4-hydroxylase subunit alpha-2 OS=Homo sapiens GN=P4HA2 PE=1
SV=1
Length = 535
Score = 114 bits (285), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 63/203 (31%), Positives = 103/203 (50%), Gaps = 23/203 (11%)
Query: 84 PRAFVYHNFLSKAECEYLIDLAKPYMVKSTVVDSKTGQSKDSRVRTSSGTFLKRGQDRII 143
P Y++ +S E E + ++AKP + ++TV D KTG + R S ++L+ D ++
Sbjct: 336 PHIVRYYDVMSDEEIERIKEIAKPKLARATVRDPKTGVLTVASYRVSKSSWLEEDDDPVV 395
Query: 144 RGIEKRIADFTFIPMEHGEGIQVLHYEVGQKYDAHYDYF----LDEFNTKNGGQRMATLL 199
+ +R+ T + ++ E +QV +Y VG +Y+ H+D+ D F G R+AT L
Sbjct: 396 ARVNRRMQHITGLTVKTAELLQVANYGVGGQYEPHFDFSRNDERDTFKHLGTGNRVATFL 455
Query: 200 MYLSDVEEGGETVFPAANANFTSVRWWNELSECGKQGLSVKPKRGDALLFWSMRPDATLD 259
Y+SDVE GG TVFP G ++ PK+G A+ ++++ D
Sbjct: 456 NYMSDVEAGGATVFP-------------------DLGAAIWPKKGTAVFWYNLLRSGEGD 496
Query: 260 PSSLHGGCPVIRGNKWSATKWMH 282
+ H CPV+ G KW + KW H
Sbjct: 497 YRTRHAACPVLVGCKWVSNKWFH 519
>sp|Q60716|P4HA2_MOUSE Prolyl 4-hydroxylase subunit alpha-2 OS=Mus musculus GN=P4ha2 PE=2
SV=1
Length = 537
Score = 112 bits (281), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 62/203 (30%), Positives = 103/203 (50%), Gaps = 23/203 (11%)
Query: 84 PRAFVYHNFLSKAECEYLIDLAKPYMVKSTVVDSKTGQSKDSRVRTSSGTFLKRGQDRII 143
P Y++ +S E E + ++AKP + ++TV D KTG + R S ++L+ D ++
Sbjct: 338 PHIVRYYDVMSDEEIERIKEIAKPKLARATVRDPKTGVLTVASYRVSKSSWLEEDDDPVV 397
Query: 144 RGIEKRIADFTFIPMEHGEGIQVLHYEVGQKYDAHYDYFL----DEFNTKNGGQRMATLL 199
+ +R+ T + ++ E +QV +Y +G +Y+ H+D+ D F G R+AT L
Sbjct: 398 ARVNRRMQHITGLTVKTAELLQVANYGMGGQYEPHFDFSRSDDEDAFKRLGTGNRVATFL 457
Query: 200 MYLSDVEEGGETVFPAANANFTSVRWWNELSECGKQGLSVKPKRGDALLFWSMRPDATLD 259
Y+SDVE GG TVFP G ++ PK+G A+ ++++ D
Sbjct: 458 NYMSDVEAGGATVFP-------------------DLGAAIWPKKGTAVFWYNLLRSGEGD 498
Query: 260 PSSLHGGCPVIRGNKWSATKWMH 282
+ H CPV+ G KW + KW H
Sbjct: 499 YRTRHAACPVLVGCKWVSNKWFH 521
>sp|Q75UG4|P4HA3_BOVIN Prolyl 4-hydroxylase subunit alpha-3 OS=Bos taurus GN=P4HA3 PE=2
SV=1
Length = 544
Score = 109 bits (272), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 64/210 (30%), Positives = 107/210 (50%), Gaps = 26/210 (12%)
Query: 78 EIVAWEPRAFVYHNFLSKAECEYLIDLAKPYMVKSTVVDSKTGQSKDSRVRTSSGTFLKR 137
E++ EP +YH+F+S AE + + LA+P++ +S V + + R+ S+ +LK
Sbjct: 340 EVIHLEPYVVLYHDFVSDAEAQTIRGLAEPWLQRSVVASGEKQLPVEYRISKSA--WLKD 397
Query: 138 GQDRIIRGIEKRIADFTFIPME--HGEGIQVLHYEVGQKYDAHYDYFLDEFNT---KNGG 192
D ++ ++ RIA T + ++ + E +QV++Y +G Y+ H+D+ + N G
Sbjct: 398 TVDPVLVTLDHRIAALTGLDVQPPYAEYLQVVNYGIGGHYEPHFDHATSPSSPLYRMNSG 457
Query: 193 QRMATLLMYLSDVEEGGETVFPAANANFTSVRWWNELSECGKQGLSVKPKRGDALLFWSM 252
R+AT ++YLS VE GG T F N SV + AL +W++
Sbjct: 458 NRVATFMIYLSSVEAGGATAFIYGN-------------------FSVPVVKNAALFWWNL 498
Query: 253 RPDATLDPSSLHGGCPVIRGNKWSATKWMH 282
D +LH CPV+ G+KW A KW+H
Sbjct: 499 HRSGEGDGDTLHAACPVLVGDKWVANKWIH 528
>sp|Q7Z4N8|P4HA3_HUMAN Prolyl 4-hydroxylase subunit alpha-3 OS=Homo sapiens GN=P4HA3 PE=1
SV=1
Length = 544
Score = 109 bits (272), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 66/210 (31%), Positives = 106/210 (50%), Gaps = 26/210 (12%)
Query: 78 EIVAWEPRAFVYHNFLSKAECEYLIDLAKPYMVKSTVVDSKTGQSKDSRVRTSSGTFLKR 137
E++ EP +YH+F+S +E + + +LA+P++ +S V + + R+ S +LK
Sbjct: 340 EVIHLEPYIALYHDFVSDSEAQKIRELAEPWLQRSVVASGEKQLQVEYRI--SKSAWLKD 397
Query: 138 GQDRIIRGIEKRIADFTFIPME--HGEGIQVLHYEVGQKYDAHYDYFLDEFNT---KNGG 192
D + + RIA T + + + E +QV++Y +G Y+ H+D+ + G
Sbjct: 398 TVDPKLVTLNHRIAALTGLDVRPPYAEYLQVVNYGIGGHYEPHFDHATSPSSPLYRMKSG 457
Query: 193 QRMATLLMYLSDVEEGGETVFPAANANFTSVRWWNELSECGKQGLSVKPKRGDALLFWSM 252
R+AT ++YLS VE GG T F AN LSV R AL +W++
Sbjct: 458 NRVATFMIYLSSVEAGGATAFIYAN-------------------LSVPVVRNAALFWWNL 498
Query: 253 RPDATLDPSSLHGGCPVIRGNKWSATKWMH 282
D +LH GCPV+ G+KW A KW+H
Sbjct: 499 HRSGEGDSDTLHAGCPVLVGDKWVANKWIH 528
>sp|Q6W3E9|P4HA3_RAT Prolyl 4-hydroxylase subunit alpha-3 OS=Rattus norvegicus GN=P4ha3
PE=2 SV=1
Length = 544
Score = 107 bits (267), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 63/210 (30%), Positives = 105/210 (50%), Gaps = 26/210 (12%)
Query: 78 EIVAWEPRAFVYHNFLSKAECEYLIDLAKPYMVKSTVVDSKTGQSKDSRVRTSSGTFLKR 137
E++ P +YH+F+S E + + +LA+P++ +S V + + R+ S +LK
Sbjct: 340 EVIHLRPLVALYHDFVSDEEAQKIRELAEPWLQRSVVASGEKQLQVEYRI--SKSAWLKD 397
Query: 138 GQDRIIRGIEKRIADFTFIPME--HGEGIQVLHYEVGQKYDAHYDYFLDE---FNTKNGG 192
D ++ +++RIA T + ++ + E +QV++Y +G Y+ H+D+ G
Sbjct: 398 TVDPVLVTLDRRIAALTGLDIQPPYAEYLQVVNYGIGGHYEPHFDHATSPSSPLYKMKSG 457
Query: 193 QRMATLLMYLSDVEEGGETVFPAANANFTSVRWWNELSECGKQGLSVKPKRGDALLFWSM 252
R ATL++YLS VE GG T F N SV + AL +W++
Sbjct: 458 NRAATLMIYLSSVEAGGATAFIYGN-------------------FSVPVVKNAALFWWNL 498
Query: 253 RPDATLDPSSLHGGCPVIRGNKWSATKWMH 282
D +LH GCPV+ G+KW A KW+H
Sbjct: 499 HRSGEGDDDTLHAGCPVLVGDKWVANKWIH 528
>sp|Q6W3F0|P4HA3_MOUSE Prolyl 4-hydroxylase subunit alpha-3 OS=Mus musculus GN=P4ha3 PE=2
SV=1
Length = 542
Score = 105 bits (261), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 63/210 (30%), Positives = 105/210 (50%), Gaps = 26/210 (12%)
Query: 78 EIVAWEPRAFVYHNFLSKAECEYLIDLAKPYMVKSTVVDSKTGQSKDSRVRTSSGTFLKR 137
E+V P +YH+F+S E + + +LA+P++ +S V + + R+ S +LK
Sbjct: 338 EVVHLRPLIALYHDFVSDEEAQKIRELAEPWLQRSVVASGEKQLQVEYRI--SKSAWLKD 395
Query: 138 GQDRIIRGIEKRIADFTFIPME--HGEGIQVLHYEVGQKYDAHYDYFLDEFNT---KNGG 192
D ++ ++ RIA T + ++ + E +QV++Y +G Y+ H+D+ + G
Sbjct: 396 TVDPMLVTLDHRIAALTGLDIQPPYAEYLQVVNYGIGGHYEPHFDHATSPSSPLYRMKSG 455
Query: 193 QRMATLLMYLSDVEEGGETVFPAANANFTSVRWWNELSECGKQGLSVKPKRGDALLFWSM 252
R+AT ++YLS VE GG T F N SV + AL +W++
Sbjct: 456 NRVATFMIYLSSVEAGGATAFIYGN-------------------FSVPVVKNAALFWWNL 496
Query: 253 RPDATLDPSSLHGGCPVIRGNKWSATKWMH 282
D +LH GCPV+ G+KW A KW+H
Sbjct: 497 HRSGEGDGDTLHAGCPVLVGDKWVANKWIH 526
>sp|Q5UP57|P4H_MIMIV Putative prolyl 4-hydroxylase OS=Acanthamoeba polyphaga mimivirus
GN=MIMI_L593 PE=1 SV=1
Length = 242
Score = 91.3 bits (225), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 95/204 (46%), Gaps = 33/204 (16%)
Query: 85 RAFVYHNFLSKAECEYLIDLAKPYMVKSTVVDSKTGQSKDSRVRTSSGTFLKRGQDRIIR 144
+ FV +N ++ +C+ ++ A + DS+ D +R S ++ + + +++
Sbjct: 59 KPFVLNNLINPTKCQEIMQFAN-----GKLFDSQVLSGTDKNIRNSQQMWISKN-NPMVK 112
Query: 145 GIEKRIADFTFIPMEHGEGIQVLHYEVGQKYDAHYDYFLD------EFNTKNGGQRMATL 198
I + I +P ++ E +QV+ Y Q Y+ H+D D EF + GGQR+ T+
Sbjct: 113 PIFENICRQFNVPFDNAEDLQVVRYLPNQYYNEHHDSCCDSSKQCSEF-IERGGQRILTV 171
Query: 199 LMYLSDVEEGGETVFPAANANFTSVRWWNELSECGKQGLSVKPKRGDALLFWSMRPDAT- 257
L+YL++ G T FP N F KPK GDAL+F+ + ++
Sbjct: 172 LIYLNNEFSDGHTYFPNLNQKF-------------------KPKTGDALVFYPLANNSNK 212
Query: 258 LDPSSLHGGCPVIRGNKWSATKWM 281
P SLH G PV G KW A W
Sbjct: 213 CHPYSLHAGMPVTSGEKWIANLWF 236
>sp|Q8BG58|P4HTM_MOUSE Transmembrane prolyl 4-hydroxylase OS=Mus musculus GN=P4htm PE=2
SV=1
Length = 503
Score = 87.0 bits (214), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 64/199 (32%), Positives = 93/199 (46%), Gaps = 42/199 (21%)
Query: 127 VRTSSGTFLKRGQ--DRIIRGIEKRIADFTFIP---MEHGEGIQVLHYEVGQKYDAHYD- 180
VR S T+L +G+ ++R I +R+ T + +E E +QV+ Y G Y AH D
Sbjct: 273 VRNSHHTWLHQGEGAHHVMRAIRQRVLRLTRLSPEIVEFSEPLQVVRYGEGGHYHAHVDS 332
Query: 181 -------------YFLDEFNTKNGGQRMATLLMYLSDVEEGGETVFPAANANFTSVRWWN 227
+E R T+L YL++V GGETVFP A+ R ++
Sbjct: 333 GPVYPETICSHTKLVANESVPFETSCRYMTVLFYLNNVTGGGETVFPVADN-----RTYD 387
Query: 228 ELS-------------ECGKQGLSVKPKRGDALLFWSMRPDAT-----LDPSSLHGGCPV 269
E+S C K L VKP++G A+ +++ PD +D SLHGGC V
Sbjct: 388 EMSLIQDDVDLRDTRRHCDKGNLRVKPQQGTAVFWYNYLPDGQGWVGEVDDYSLHGGCLV 447
Query: 270 IRGNKWSATKWMHVHEYKA 288
RG KW A W++V +A
Sbjct: 448 TRGTKWIANNWINVDPSRA 466
>sp|Q9NXG6|P4HTM_HUMAN Transmembrane prolyl 4-hydroxylase OS=Homo sapiens GN=P4HTM PE=1
SV=2
Length = 502
Score = 86.3 bits (212), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 65/199 (32%), Positives = 93/199 (46%), Gaps = 42/199 (21%)
Query: 127 VRTSSGTFLKRGQ--DRIIRGIEKRIADFTFIP---MEHGEGIQVLHYEVGQKYDAHYD- 180
VR S T+L +G+ I+R I +R+ T + +E E +QV+ Y G Y AH D
Sbjct: 272 VRNSHHTWLYQGEGAHHIMRAIRQRVLRLTRLSPEIVELSEPLQVVRYGEGGHYHAHVDS 331
Query: 181 -------------YFLDEFNTKNGGQRMATLLMYLSDVEEGGETVFPAANANFTSVRWWN 227
+E R T+L YL++V GGETVFP A+ R ++
Sbjct: 332 GPVYPETICSHTKLVANESVPFETSCRYMTVLFYLNNVTGGGETVFPVADN-----RTYD 386
Query: 228 ELS-------------ECGKQGLSVKPKRGDALLFWSMRPDAT-----LDPSSLHGGCPV 269
E+S C K L VKP++G A+ +++ PD +D SLHGGC V
Sbjct: 387 EMSLIQDDVDLRDTRRHCDKGNLRVKPQQGTAVFWYNYLPDGQGWVGDVDDYSLHGGCLV 446
Query: 270 IRGNKWSATKWMHVHEYKA 288
RG KW A W++V +A
Sbjct: 447 TRGTKWIANNWINVDPSRA 465
>sp|O31646|MANA1_BACSU Mannose-6-phosphate isomerase ManA OS=Bacillus subtilis (strain
168) GN=manA PE=3 SV=1
Length = 315
Score = 34.7 bits (78), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 12/90 (13%)
Query: 93 LSKAECEYLIDLAKPYMVKSTVVDSKTGQSKDSRVRTSSGTFLKRGQ-DRIIRGIEKRIA 151
L K EC Y+ID K D++ ++ + T ++RG+ D ++R ++ +
Sbjct: 111 LGKTECWYIIDCQK---------DAEIIYGHNATTKEELTTMIERGEWDELLRRVKVKPG 161
Query: 152 DFTFIP--MEHGEGIQVLHYEVGQKYDAHY 179
DF ++P H G +L E Q D Y
Sbjct: 162 DFFYVPSGTVHAIGKGILALETQQNSDTTY 191
>sp|B7K3F6|DTD_CYAP8 D-tyrosyl-tRNA(Tyr) deacylase OS=Cyanothece sp. (strain PCC 8801)
GN=dtd PE=3 SV=1
Length = 147
Score = 33.5 bits (75), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 45/101 (44%), Gaps = 8/101 (7%)
Query: 40 FYIPIGDDDSPPNDLTSFRRRAFEKRSSIAEEKGEQWTEIVA-WEPRAFVYHNFLSKAEC 98
+ IG++D+ ++L R+ E R AEE G++W + V + V F +C
Sbjct: 29 LLVGIGNNDTE-SELDWMTRKCLELRLFPAEEGGDRWEKSVQEIQGELLVISQFTLYGDC 87
Query: 99 E-----YLIDLAKPYMVKSTVVDSKTGQSKDSRVRTSSGTF 134
D A P + K T+ D Q KDS ++ +G F
Sbjct: 88 RKGRRPSFSDSASPSIAK-TLYDQFVAQLKDSGLKVETGIF 127
>sp|A4J103|RPOB_DESRM DNA-directed RNA polymerase subunit beta OS=Desulfotomaculum
reducens (strain MI-1) GN=rpoB PE=3 SV=1
Length = 1145
Score = 31.6 bits (70), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 8/58 (13%)
Query: 94 SKAEC-EYLIDLAKPYMVKSTVVDSKTGQSKDSRV-------RTSSGTFLKRGQDRII 143
S EC E + A P VK +++ +TG+ K+ V TS GTF+ G +R+I
Sbjct: 75 SVEECKERDVTYAAPLRVKVRLINKETGEVKEQEVFMGDFPLMTSKGTFIINGAERVI 132
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.135 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 111,535,631
Number of Sequences: 539616
Number of extensions: 4661079
Number of successful extensions: 10784
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 10719
Number of HSP's gapped (non-prelim): 31
length of query: 288
length of database: 191,569,459
effective HSP length: 116
effective length of query: 172
effective length of database: 128,974,003
effective search space: 22183528516
effective search space used: 22183528516
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)