BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023054
(288 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RD5|A Chain A, Crystal Structure Of A Putative Uncharacterized Protein
From Mycobacterium Paratuberculosis
Length = 291
Score = 108 bits (271), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 90/290 (31%), Positives = 129/290 (44%), Gaps = 30/290 (10%)
Query: 1 MLAGGASGIGLETARVLALRKAHVIIXXXXXXXXXXXXQLILKEDDTARVDTLKLDLSSI 60
++ G SG+G TAR LA R A VI+ + + +V+ +LDL +
Sbjct: 20 VITGANSGLGAVTARELARRGATVIMAVRDTRKGEAAARTM-----AGQVEVRELDLQDL 74
Query: 61 ASIKDFAQNFXXXXXXXXXXXXXXXXMFCPYQISEDGIEMQFATNHIGHFLLTNLLLDTM 120
+S++ FA M PY ++ DG E Q TNH+GHF LTNLLL +
Sbjct: 75 SSVRRFADGVSGADVLINNAGI----MAVPYALTVDGFESQIGTNHLGHFALTNLLLPRL 130
Query: 121 NRTAKETGIEGRIVNLSSIAHQYTYKGGIRFQKINDRA-GYSDKKAYGQSKLANILHANE 179
R+V +SS+AH + G I + +N R+ YS AY QSKLAN+L +E
Sbjct: 131 T---------DRVVTVSSMAH---WPGRINLEDLNWRSRRYSPWLAYSQSKLANLLFTSE 178
Query: 180 LSRRFQEEGVNITANSVHPGLIMTNLFKHSAVVM--RFLKFFSFFLWKNVPQGAATTCYV 237
L RR G + A + HPG TNL S + + + + + GA T Y
Sbjct: 179 LQRRLTAAGSPLRALAAHPGYSHTNLQGASGRKLGDALMSAATRVVATDADFGARQTLYA 238
Query: 238 ALHPNLKG--VTGKYFLDCNEMPP---SALARDETLAKKLWDFSNKMINS 282
A +L G G F P S A+D +A LW S ++ +
Sbjct: 239 ASQ-DLPGDSFVGPRFGYLGRTQPVGRSRRAKDAGMAAALWALSEQLTKT 287
>pdb|4ESO|A Chain A, Crystal Structure Of A Putative Oxidoreductase Protein
From Sinorhizobium Meliloti 1021 In Complex With Nadp
pdb|4ESO|B Chain B, Crystal Structure Of A Putative Oxidoreductase Protein
From Sinorhizobium Meliloti 1021 In Complex With Nadp
pdb|4ESO|C Chain C, Crystal Structure Of A Putative Oxidoreductase Protein
From Sinorhizobium Meliloti 1021 In Complex With Nadp
pdb|4ESO|D Chain D, Crystal Structure Of A Putative Oxidoreductase Protein
From Sinorhizobium Meliloti 1021 In Complex With Nadp
Length = 255
Score = 35.8 bits (81), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 72/205 (35%), Gaps = 31/205 (15%)
Query: 1 MLAGGASGIGLETARVLALRKAHVIIXXXXXXXXXXXXQLILKEDDTARVDTLKLDLSSI 60
++ GG G GL T R L A V++ ++E+ RV L+ D++ +
Sbjct: 12 IVIGGTHGXGLATVRRLVEGGAEVLLTGRNESNIAR-----IREEFGPRVHALRSDIADL 66
Query: 61 ASIKDF-AQNFXXXXXXXXXXXXXXXXMFCPY-QISEDGIEMQFATNHIGHFLLTNLLLD 118
I A P+ Q+SE + QFA N G F L
Sbjct: 67 NEIAVLGAAAGQTLGAIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTP 126
Query: 119 TMNRTAKETGIEGRIVNLSSIAHQYTYKGGIRFQKINDRAGYSDKKAYGQSKLANILHAN 178
+ G IV SS+A D G+ Y SK A + A+
Sbjct: 127 LIREG-------GSIVFTSSVA---------------DEGGHPGXSVYSASKAALVSFAS 164
Query: 179 ELSRRFQEEGVNITANSVHPGLIMT 203
L+ G+ + NSV PG I T
Sbjct: 165 VLAAELLPRGIRV--NSVSPGFIDT 187
>pdb|3VC7|A Chain A, Crystal Structure Of A Putative Oxidoreductase From
Sinorhizobium Meliloti 1021
pdb|3VC7|B Chain B, Crystal Structure Of A Putative Oxidoreductase From
Sinorhizobium Meliloti 1021
Length = 254
Score = 35.8 bits (81), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 72/205 (35%), Gaps = 31/205 (15%)
Query: 1 MLAGGASGIGLETARVLALRKAHVIIXXXXXXXXXXXXQLILKEDDTARVDTLKLDLSSI 60
++ GG G GL T R L A V++ ++E+ RV L+ D++ +
Sbjct: 11 IVIGGTHGXGLATVRRLVEGGAEVLLTGRNESNIAR-----IREEFGPRVHALRSDIADL 65
Query: 61 ASIKDF-AQNFXXXXXXXXXXXXXXXXMFCPY-QISEDGIEMQFATNHIGHFLLTNLLLD 118
I A P+ Q+SE + QFA N G F L
Sbjct: 66 NEIAVLGAAAGQTLGAIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTP 125
Query: 119 TMNRTAKETGIEGRIVNLSSIAHQYTYKGGIRFQKINDRAGYSDKKAYGQSKLANILHAN 178
+ G IV SS+A D G+ Y SK A + A+
Sbjct: 126 LIREG-------GSIVFTSSVA---------------DEGGHPGXSVYSASKAALVSFAS 163
Query: 179 ELSRRFQEEGVNITANSVHPGLIMT 203
L+ G+ + NSV PG I T
Sbjct: 164 VLAAELLPRGIRV--NSVSPGFIDT 186
>pdb|4DML|A Chain A, 3-Oxoacyl-[acyl-Carrier-Protein] Reductase From
Synechococcus Elongatus Pcc 7942
pdb|4DML|B Chain B, 3-Oxoacyl-[acyl-Carrier-Protein] Reductase From
Synechococcus Elongatus Pcc 7942
pdb|4DML|C Chain C, 3-Oxoacyl-[acyl-Carrier-Protein] Reductase From
Synechococcus Elongatus Pcc 7942
pdb|4DML|D Chain D, 3-Oxoacyl-[acyl-Carrier-Protein] Reductase From
Synechococcus Elongatus Pcc 7942
pdb|4DMM|A Chain A, 3-Oxoacyl-[acyl-Carrier-Protein] Reductase From
Synechococcus Elongatus Pcc 7942 In Complex With Nadp
pdb|4DMM|B Chain B, 3-Oxoacyl-[acyl-Carrier-Protein] Reductase From
Synechococcus Elongatus Pcc 7942 In Complex With Nadp
pdb|4DMM|C Chain C, 3-Oxoacyl-[acyl-Carrier-Protein] Reductase From
Synechococcus Elongatus Pcc 7942 In Complex With Nadp
pdb|4DMM|D Chain D, 3-Oxoacyl-[acyl-Carrier-Protein] Reductase From
Synechococcus Elongatus Pcc 7942 In Complex With Nadp
Length = 269
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 51/123 (41%), Gaps = 22/123 (17%)
Query: 131 GRIVNLSSIAHQYTYKGGIRFQKINDRAGYSDKKA--YGQSKLANILHANELSRRFQEEG 188
GRI+N++S+ + G +A YS KA G +K A EL+ R
Sbjct: 158 GRIINIASVVGEMGNPG---------QANYSAAKAGVIGLTKTV----AKELASR----- 199
Query: 189 VNITANSVHPGLIMTNLFKHSAVVMRFLKFFSFFLWKNVPQGAATTCYVALHPNLKGVTG 248
IT N+V PG I T++ A + L+ + + A ++A P +TG
Sbjct: 200 -GITVNAVAPGFIATDMTSELA-AEKLLEVIPLGRYGEAAEVAGVVRFLAADPAAAYITG 257
Query: 249 KYF 251
+
Sbjct: 258 QVI 260
>pdb|2EW8|A Chain A, Crystal Structure Of The (s)-specific 1-phenylethanol
Dehydrogenase Of The Denitrifying Bacterium Strain Ebn1
pdb|2EW8|B Chain B, Crystal Structure Of The (s)-specific 1-phenylethanol
Dehydrogenase Of The Denitrifying Bacterium Strain Ebn1
pdb|2EW8|C Chain C, Crystal Structure Of The (s)-specific 1-phenylethanol
Dehydrogenase Of The Denitrifying Bacterium Strain Ebn1
pdb|2EW8|D Chain D, Crystal Structure Of The (s)-specific 1-phenylethanol
Dehydrogenase Of The Denitrifying Bacterium Strain Ebn1
pdb|2EWM|A Chain A, Crystal Structure Of The (S)-Specific 1-Phenylethanol
Dehydrogenase Of The Denitrifying Bacterium Strain Ebn1
pdb|2EWM|B Chain B, Crystal Structure Of The (S)-Specific 1-Phenylethanol
Dehydrogenase Of The Denitrifying Bacterium Strain Ebn1
Length = 249
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 80/217 (36%), Gaps = 28/217 (12%)
Query: 1 MLAGGASGIGLETARVLALRKAHVIIXXXXXXXXXXXXQLILKEDDTARVDTLKLDLSSI 60
++ GGA+GIG A A+ A + I L RV T+K D+S
Sbjct: 11 VITGGANGIGRAIAERFAVEGADIAIADLVPAPEAEAAIRNLGR----RVLTVKCDVSQP 66
Query: 61 ASIKDFA-QNFXXXXXXXXXXXXXXXXMFCPY-QISEDGIEMQFATNHIGHFLLTNLLLD 118
++ F Q P+ +++ + + F N FL+ +
Sbjct: 67 GDVEAFGKQVISTFGRCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVP 126
Query: 119 TMNRTAKETGIEGRIVNLSSIAHQYTYKGGIRFQKINDRAGYSDKKAYGQSKLANILHAN 178
M R GRI+NL+S + + KI Y KA ANI
Sbjct: 127 GMKRNG-----WGRIINLTSTTY---------WLKIEAYTHYISTKA------ANIGFTR 166
Query: 179 ELSRRFQEEGVNITANSVHPGLIMTNLFKHSAVVMRF 215
L+ ++G IT N++ P L+ T + SA+ F
Sbjct: 167 ALASDLGKDG--ITVNAIAPSLVRTATTEASALSAMF 201
>pdb|1HXH|A Chain A, Comamonas Testosteroni 3beta17BETA HYDROXYSTEROID
Dehydrogenase
pdb|1HXH|B Chain B, Comamonas Testosteroni 3beta17BETA HYDROXYSTEROID
Dehydrogenase
pdb|1HXH|C Chain C, Comamonas Testosteroni 3beta17BETA HYDROXYSTEROID
Dehydrogenase
pdb|1HXH|D Chain D, Comamonas Testosteroni 3beta17BETA HYDROXYSTEROID
Dehydrogenase
Length = 253
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 17/85 (20%)
Query: 125 KETGIEGRIVNLSSIAHQYTYKGGIRFQKINDRAGYSDKKAYGQSKLANILHANELSRRF 184
KETG G I+N++S++ + I AGYS KA ++ + A LS R
Sbjct: 127 KETG--GSIINMASVSS---------WLPIEQYAGYSASKA----AVSALTRAAALSCRK 171
Query: 185 QEEGVNITANSVHPGLIMTNLFKHS 209
Q G I NS+HP I T + + S
Sbjct: 172 Q--GYAIRVNSIHPDGIYTPMMQAS 194
>pdb|3F9I|A Chain A, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein)
Reductase Rickettsia Prowazekii
pdb|3F9I|B Chain B, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein)
Reductase Rickettsia Prowazekii
Length = 249
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 81/209 (38%), Gaps = 37/209 (17%)
Query: 1 MLAGGASGIGLETARVLALRKAHVIIXXXXXXXXXXXXQLILKEDDTARVDTLKLDLSSI 60
++ G +SGIG AR+L + VII LK A D +++ ++
Sbjct: 18 LITGASSGIGSAIARLLHKLGSKVIISGSNEEK--------LKSLGNALKDNYTIEVCNL 69
Query: 61 ASIKDFAQNFXXXXXXXXXXXXXXXXMFCPYQISEDGIEMQFATNHIGHFLLTNLLLD-T 119
A+ K+ N + C I+ D + ++ + NL +
Sbjct: 70 AN-KEECSNL-------ISKTSNLDILVCNAGITSDTLAIRMKDQDFDKVIDINLKANFI 121
Query: 120 MNRTAKETGIE---GRIVNLSSIAHQYTYKGGIRFQKINDRAGYSDKKAYGQSKLANILH 176
+NR A + I+ GRI+N+SSI GI AG + Y SK I
Sbjct: 122 LNREAIKKMIQKRYGRIINISSIV-------GI--------AGNPGQANYCASKAGLIGM 166
Query: 177 ANELSRRFQEEGVNITANSVHPGLIMTNL 205
LS G IT N+V PG I +++
Sbjct: 167 TKSLSYEVATRG--ITVNAVAPGFIKSDM 193
>pdb|4HP8|A Chain A, Crystal Structure Of A Putative 2-Deoxy-D-Gluconate
3-Dehydrogenase From Agrobacterium Tumefaciens (Target
Efi-506435) With Bound Nadp
pdb|4HP8|B Chain B, Crystal Structure Of A Putative 2-Deoxy-D-Gluconate
3-Dehydrogenase From Agrobacterium Tumefaciens (Target
Efi-506435) With Bound Nadp
Length = 247
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 17/77 (22%)
Query: 128 GIEGRIVNLSSIAHQYTYKGGIRFQKINDRAGYSDKKAYGQSKLANILHANELSRRFQEE 187
G G++VN++S+ +++GGIR Y+ K +G + L +L ANE + +
Sbjct: 129 GRSGKVVNIASL---LSFQGGIRVPS------YTAAK-HGVAGLTKLL-ANE----WAAK 173
Query: 188 GVNITANSVHPGLIMTN 204
G+N+ N++ PG I TN
Sbjct: 174 GINV--NAIAPGYIETN 188
>pdb|3EZL|A Chain A, Crystal Structure Of Acetyacetyl-Coa Reductase From
Burkholderia Pseudomallei 1710b
Length = 256
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 48/104 (46%), Gaps = 22/104 (21%)
Query: 104 TNHIGHFLLTNLLLDTMNRTAKETGIEGRIVNLSSIAHQYTYKGGIRFQKINDRAGYSDK 163
TN F +T ++D M E G GRI+N+SS+ Q KG +F + N YS
Sbjct: 121 TNLTSLFNVTKQVIDGM----VERGW-GRIINISSVNGQ---KG--QFGQTN----YSTA 166
Query: 164 KAYGQSKLANILHANELSRRFQEEGVNITANSVHPGLIMTNLFK 207
KA +H +S + +T N+V PG I T++ K
Sbjct: 167 KAG--------IHGFTMSLAQEVATKGVTVNTVSPGYIGTDMVK 202
>pdb|2UVD|A Chain A, The Crystal Structure Of A 3-Oxoacyl-(Acyl Carrier
Protein) Reductase From Bacillus Anthracis (Ba3989)
pdb|2UVD|B Chain B, The Crystal Structure Of A 3-Oxoacyl-(Acyl Carrier
Protein) Reductase From Bacillus Anthracis (Ba3989)
pdb|2UVD|C Chain C, The Crystal Structure Of A 3-Oxoacyl-(Acyl Carrier
Protein) Reductase From Bacillus Anthracis (Ba3989)
pdb|2UVD|D Chain D, The Crystal Structure Of A 3-Oxoacyl-(Acyl Carrier
Protein) Reductase From Bacillus Anthracis (Ba3989)
pdb|2UVD|E Chain E, The Crystal Structure Of A 3-Oxoacyl-(Acyl Carrier
Protein) Reductase From Bacillus Anthracis (Ba3989)
pdb|2UVD|F Chain F, The Crystal Structure Of A 3-Oxoacyl-(Acyl Carrier
Protein) Reductase From Bacillus Anthracis (Ba3989)
pdb|2UVD|G Chain G, The Crystal Structure Of A 3-Oxoacyl-(Acyl Carrier
Protein) Reductase From Bacillus Anthracis (Ba3989)
pdb|2UVD|H Chain H, The Crystal Structure Of A 3-Oxoacyl-(Acyl Carrier
Protein) Reductase From Bacillus Anthracis (Ba3989)
Length = 246
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 45/104 (43%), Gaps = 26/104 (25%)
Query: 104 TNHIGHFLLTNLLLDTMNRTAKETGIEGRIVNLSSIAHQYTYKGGIRFQKINDRAGYSDK 163
TN G FL T + M R GRIVN++S+ G +A Y
Sbjct: 112 TNLKGVFLCTKAVSRFMMRQR-----HGRIVNIASVVGVTGNPG---------QANYVAA 157
Query: 164 KA--YGQSKLANILHANELSRRFQEEGVNITANSVHPGLIMTNL 205
KA G +K + A EL+ R NIT N++ PG I T++
Sbjct: 158 KAGVIGLTKTS----AKELASR------NITVNAIAPGFIATDM 191
>pdb|3TZQ|B Chain B, Crystal Structure Of A Short-Chain Type
DehydrogenaseREDUCTASE FROM Mycobacterium Marinum
pdb|3TZQ|A Chain A, Crystal Structure Of A Short-Chain Type
DehydrogenaseREDUCTASE FROM Mycobacterium Marinum
pdb|3TZQ|D Chain D, Crystal Structure Of A Short-Chain Type
DehydrogenaseREDUCTASE FROM Mycobacterium Marinum
pdb|3TZQ|C Chain C, Crystal Structure Of A Short-Chain Type
DehydrogenaseREDUCTASE FROM Mycobacterium Marinum
pdb|3TZQ|F Chain F, Crystal Structure Of A Short-Chain Type
DehydrogenaseREDUCTASE FROM Mycobacterium Marinum
pdb|3TZQ|E Chain E, Crystal Structure Of A Short-Chain Type
DehydrogenaseREDUCTASE FROM Mycobacterium Marinum
pdb|3TZQ|H Chain H, Crystal Structure Of A Short-Chain Type
DehydrogenaseREDUCTASE FROM Mycobacterium Marinum
pdb|3TZQ|G Chain G, Crystal Structure Of A Short-Chain Type
DehydrogenaseREDUCTASE FROM Mycobacterium Marinum
Length = 271
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 1 MLAGGASGIGLETARVLALRKAHVII 26
++ G GIGLET+RVLA A V++
Sbjct: 15 IITGACGGIGLETSRVLARAGARVVL 40
>pdb|3P19|A Chain A, Improved Nadph-Dependent Blue Fluorescent Protein
pdb|3P19|B Chain B, Improved Nadph-Dependent Blue Fluorescent Protein
pdb|3P19|C Chain C, Improved Nadph-Dependent Blue Fluorescent Protein
pdb|3P19|D Chain D, Improved Nadph-Dependent Blue Fluorescent Protein
Length = 266
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 17/79 (21%)
Query: 131 GRIVNLSSIAHQYTYKGGIRFQKINDRAGYSDKKAYGQSKLANILHANELSRRFQEEGVN 190
G I+N+SSIA + T + D AY +K A +HA + R + N
Sbjct: 139 GTIINISSIAGKKT---------------FPDHAAYCGTKFA--VHAISENVREEVAASN 181
Query: 191 ITANSVHPGLIMTNLFKHS 209
+ ++ P + T L H+
Sbjct: 182 VRVMTIAPSAVKTELLSHT 200
>pdb|2NM0|A Chain A, Crystal Structure Of Sco1815: A Beta-Ketoacyl-Acyl Carrier
Protein Reductase From Streptomyces Coelicolor A3(2)
pdb|2NM0|B Chain B, Crystal Structure Of Sco1815: A Beta-Ketoacyl-Acyl Carrier
Protein Reductase From Streptomyces Coelicolor A3(2)
Length = 253
Score = 27.7 bits (60), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 44/116 (37%), Gaps = 22/116 (18%)
Query: 92 QISEDGIEMQFATNHIGHFLLTNLLLDTMNRTAKETGIEGRIVNLSSIAHQYTYKGGIRF 151
++SE+ TN G F + M R K GR+V +SS+
Sbjct: 105 RMSEEDFTSVVETNLTGTFRVVKRANRAMLRAKK-----GRVVLISSVVGLL-------- 151
Query: 152 QKINDRAGYSDKKAYGQSKLANILHANELSRRFQEEGVNITANSVHPGLIMTNLFK 207
G + + Y SK + A L+R NIT N V PG + T++ K
Sbjct: 152 -------GSAGQANYAASKAGLVGFARSLARELGSR--NITFNVVAPGFVDTDMTK 198
>pdb|3KSU|A Chain A, Crystal Structure Of Short-Chain Dehydrogenase From
Oenococcus Oeni Psu-1
pdb|3KSU|B Chain B, Crystal Structure Of Short-Chain Dehydrogenase From
Oenococcus Oeni Psu-1
Length = 262
Score = 27.7 bits (60), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Query: 1 MLAGGASGIGLETARVLALRKAHVIIXXXXXXXXXXXXQLILK-EDDTARVDTLKLDLSS 59
++AGG +G TA+ AL ++++ +L + ED A+V + DLS+
Sbjct: 15 VIAGGIKNLGALTAKTFALESVNLVLHYHQAKDSDTANKLKDELEDQGAKVALYQSDLSN 74
Query: 60 ---IASIKDFAQ 68
+A + DFA+
Sbjct: 75 EEEVAKLFDFAE 86
>pdb|3TJR|A Chain A, Crystal Structure Of A Rv0851c Ortholog Short Chain
Dehydrogenase From Mycobacterium Paratuberculosis
pdb|3TJR|B Chain B, Crystal Structure Of A Rv0851c Ortholog Short Chain
Dehydrogenase From Mycobacterium Paratuberculosis
Length = 301
Score = 27.3 bits (59), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 1 MLAGGASGIGLETARVLALRKAHVII 26
++ GGASGIGL TA A R A +++
Sbjct: 35 VVTGGASGIGLATATEFARRGARLVL 60
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.134 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,834,820
Number of Sequences: 62578
Number of extensions: 231546
Number of successful extensions: 657
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 649
Number of HSP's gapped (non-prelim): 27
length of query: 288
length of database: 14,973,337
effective HSP length: 98
effective length of query: 190
effective length of database: 8,840,693
effective search space: 1679731670
effective search space used: 1679731670
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)