Query 023055
Match_columns 288
No_of_seqs 126 out of 145
Neff 3.3
Searched_HMMs 46136
Date Fri Mar 29 08:07:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023055.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023055hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05212 DUF707: Protein of un 100.0 2E-102 4E-107 722.8 16.7 208 80-287 1-209 (294)
2 PF03672 UPF0154: Uncharacteri 60.2 3.2 6.8E-05 32.2 0.2 17 19-35 3-19 (64)
3 cd04185 GT_2_like_b Subfamily 55.0 10 0.00022 31.3 2.4 42 194-235 78-119 (202)
4 PF12621 DUF3779: Phosphate me 53.1 13 0.00028 29.8 2.6 43 185-231 34-76 (95)
5 TIGR01556 rhamnosyltran L-rham 49.6 13 0.00029 32.9 2.4 38 195-232 73-112 (281)
6 PRK01844 hypothetical protein; 48.0 6.6 0.00014 31.2 0.2 16 20-35 11-26 (72)
7 cd06434 GT2_HAS Hyaluronan syn 45.2 12 0.00025 31.5 1.3 41 194-234 76-116 (235)
8 cd04186 GT_2_like_c Subfamily 45.1 22 0.00047 27.5 2.7 36 195-230 74-110 (166)
9 PF12996 DUF3880: DUF based on 44.3 10 0.00023 28.9 0.8 26 190-225 13-38 (79)
10 PF00535 Glycos_transf_2: Glyc 43.2 21 0.00045 27.2 2.3 36 194-229 77-112 (169)
11 PF14538 Raptor_N: Raptor N-te 42.8 15 0.00033 32.0 1.7 58 136-205 77-144 (154)
12 PRK11677 hypothetical protein; 41.7 9.6 0.00021 33.0 0.3 19 19-37 6-24 (134)
13 PF06295 DUF1043: Protein of u 40.5 9.9 0.00021 32.0 0.2 19 19-37 2-20 (128)
14 cd06421 CESA_CelA_like CESA_Ce 39.0 24 0.00053 29.4 2.3 38 194-231 83-121 (234)
15 PRK00523 hypothetical protein; 37.3 12 0.00026 29.7 0.2 15 20-34 12-26 (72)
16 cd02525 Succinoglycan_BP_ExoA 36.6 28 0.00061 29.1 2.3 38 194-231 80-117 (249)
17 PF13641 Glyco_tranf_2_3: Glyc 34.8 17 0.00037 30.4 0.8 42 194-235 85-126 (228)
18 PF14654 Epiglycanin_C: Mucin, 33.2 16 0.00034 30.9 0.3 29 11-39 9-42 (106)
19 cd02510 pp-GalNAc-T pp-GalNAc- 32.8 41 0.00089 30.3 2.9 41 194-234 82-122 (299)
20 cd06435 CESA_NdvC_like NdvC_li 31.8 26 0.00056 29.6 1.3 36 195-230 84-119 (236)
21 cd04195 GT2_AmsE_like GT2_AmsE 29.6 48 0.001 27.1 2.6 38 194-231 79-117 (201)
22 PF12072 DUF3552: Domain of un 28.3 20 0.00044 31.9 0.2 18 20-37 3-20 (201)
23 cd02520 Glucosylceramide_synth 28.0 46 0.00099 27.8 2.2 34 194-227 85-118 (196)
24 cd04196 GT_2_like_d Subfamily 27.9 69 0.0015 26.1 3.2 27 193-222 77-103 (214)
25 cd06437 CESA_CaSu_A2 Cellulose 27.5 34 0.00073 29.1 1.3 37 194-230 86-122 (232)
26 cd08910 START_STARD2-like Lipi 23.4 1.3E+02 0.0029 26.7 4.4 44 210-260 4-47 (207)
27 cd00761 Glyco_tranf_GTA_type G 22.9 67 0.0015 23.5 2.0 37 195-231 77-114 (156)
28 cd06433 GT_2_WfgS_like WfgS an 22.5 94 0.002 24.7 2.9 27 194-220 74-100 (202)
29 cd06423 CESA_like CESA_like is 22.2 52 0.0011 24.8 1.4 22 195-216 78-99 (180)
30 PF03314 DUF273: Protein of un 21.4 58 0.0013 30.8 1.8 38 180-217 25-65 (222)
31 cd04184 GT2_RfbC_Mx_like Myxoc 21.1 75 0.0016 25.9 2.2 36 194-229 82-118 (202)
32 PF01060 DUF290: Transthyretin 21.1 2.7E+02 0.0058 21.2 5.1 19 261-279 62-80 (80)
33 PRK13863 type IV secretion sys 21.0 99 0.0021 31.9 3.4 92 121-243 84-189 (446)
34 PF07862 Nif11: Nitrogen fixat 20.8 88 0.0019 21.7 2.2 21 210-230 26-46 (49)
35 cd02526 GT2_RfbF_like RfbF is 20.6 83 0.0018 26.4 2.4 23 195-217 75-97 (237)
36 PF11688 DUF3285: Protein of u 20.1 28 0.0006 25.6 -0.5 26 11-37 17-42 (45)
No 1
>PF05212 DUF707: Protein of unknown function (DUF707); InterPro: IPR007877 This family consists of uncharacterised proteins from Arabidopsis thaliana.
Probab=100.00 E-value=1.9e-102 Score=722.83 Aligned_cols=208 Identities=60% Similarity=1.121 Sum_probs=202.6
Q ss_pred eeccCCCCCCCCCCCCccccCCccccccccCCCCcCcCCCCceEEEEEeccccccchhHHhhhcccCcEEEEEEECCCCC
Q 023055 80 IYVSTNPRGAELLPPGIVVSESDFFLRRLWGEPSEDLKKKPKYLLTITVGLNQKKNIDRMVKKFSEDFQIMLFHYDGQTS 159 (288)
Q Consensus 80 ~~~~~~p~g~e~LP~gIv~~~Sdl~~r~Lwg~p~~~~~~~~k~Lla~~VG~kqk~~Vd~~v~KFs~nF~vmLFHYDG~vd 159 (288)
|+++++|+|+|+||+|||+++||||||||||+|++|...++|||||||||+|||++||++|+||++||+||||||||+||
T Consensus 1 ~~~~~~p~g~e~Lp~giv~~~sd~~~r~lw~~p~~~~~~~~k~Lla~~VG~kqk~~vd~~v~Kf~~nF~i~LfhYDg~vd 80 (294)
T PF05212_consen 1 IWVPCNPRGAERLPPGIVVRESDLELRPLWGNPSEDLPKKPKYLLAMTVGIKQKDNVDAIVKKFSDNFDIMLFHYDGRVD 80 (294)
T ss_pred CCcCCCCCccccCCCCccccCCCceeeecCCCccccccCCCceEEEEEecHHHHhhhhHHHhhhccCceEEEEEecCCcC
Confidence 67899999999999999999999999999999999999899999999999999999999999999999999999999999
Q ss_pred ccccccccCcceEEEEeccccceeeccccCcchhccceEEEeeccccccCCCChHHHHHHHHHhCCcccCCCccCCCC-c
Q 023055 160 QWDEFEWSKSAIHVSIRRQTKWWYAKRFLHPDVVAAYEYIFIWDEDLGVEHFNGDKYMELVKKHGLDISQPGLEPNNG-L 238 (288)
Q Consensus 160 ~W~d~eWs~~aIHVsa~kQtKWwfaKRFLHPDiVa~YdYIFlWDEDLgVd~F~~~rYl~Ivk~~gLEISQPALd~~s~-i 238 (288)
+|+|||||++||||+++|||||||||||||||||++|||||||||||+||||+|+|||+|||+|||||||||||++++ +
T Consensus 81 ~w~~~~ws~~aiHv~~~kqtKww~akrfLHPdiv~~YdYiflwDeDL~vd~f~~~ry~~Ivk~~gLeISQPALd~~~~~~ 160 (294)
T PF05212_consen 81 EWDDFEWSDRAIHVSARKQTKWWFAKRFLHPDIVAPYDYIFLWDEDLGVDHFDINRYFEIVKKEGLEISQPALDPDSSEI 160 (294)
T ss_pred chhhcccccceEEEEeccceEEeehhhhcChhhhccceeEEecCCccCcCcCCHHHHHHHHHHhCCcccCcccCCCCcee
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999874 9
Q ss_pred ceeeeeeeCCceeeeeeccCCCCCCCCCCCCccceeeeehhcccccccc
Q 023055 239 TWQMTKRRGDQEVHKVTEEKPGWCSDPHLPPCAAYALHLSLLSSLSLCC 287 (288)
Q Consensus 239 ~h~iT~R~~~~~vHr~~~~~~g~C~~~~~pPCtgfVE~MAPVFSRaA~~ 287 (288)
||+||+|+++++|||.+.+++++|+++|+||||||||||||||||+||.
T Consensus 161 ~~~iT~R~~~~~vhr~~~~~~~~~~~~~~ppct~fVEiMAPVFSr~Awr 209 (294)
T PF05212_consen 161 HHPITKRRPDSEVHRKTRGGPRCCDDSTGPPCTGFVEIMAPVFSRAAWR 209 (294)
T ss_pred eeeEEeecCCceeEeccCCCCCcCCCCCCCCcceEEEEecceechHHHH
Confidence 9999999999999997777778888999999999999999999999984
No 2
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=60.19 E-value=3.2 Score=32.18 Aligned_cols=17 Identities=35% Similarity=1.028 Sum_probs=14.2
Q ss_pred hHHHHHHHHhhheeEee
Q 023055 19 LIITTFIGVLIGYFVGR 35 (288)
Q Consensus 19 ~i~~~~~~~~~gf~igi 35 (288)
+|++.++|++.|||++.
T Consensus 3 iilali~G~~~Gff~ar 19 (64)
T PF03672_consen 3 IILALIVGAVIGFFIAR 19 (64)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 57888899999999864
No 3
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=54.96 E-value=10 Score=31.29 Aligned_cols=42 Identities=17% Similarity=0.252 Sum_probs=33.1
Q ss_pred ccceEEEeeccccccCCCChHHHHHHHHHhCCcccCCCccCC
Q 023055 194 AAYEYIFIWDEDLGVEHFNGDKYMELVKKHGLDISQPGLEPN 235 (288)
Q Consensus 194 a~YdYIFlWDEDLgVd~F~~~rYl~Ivk~~gLEISQPALd~~ 235 (288)
+.+||+++.|+|..++.--.+++++.+++.+..+..|..-..
T Consensus 78 ~~~d~v~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 119 (202)
T cd04185 78 LGYDWIWLMDDDAIPDPDALEKLLAYADKDNPQFLAPLVLDP 119 (202)
T ss_pred cCCCEEEEeCCCCCcChHHHHHHHHHHhcCCceEecceeEcC
Confidence 579999999999999877778888888766777777654443
No 4
>PF12621 DUF3779: Phosphate metabolism protein ; InterPro: IPR022257 This domain family is found in eukaryotes, and is approximately 100 amino acids in length. The family is found in association with PF02714 from PFAM. There are two completely conserved residues (W and D) that may be functionally important. This family is likely to be involved in phosphate metabolism however there is little accompanying literature to confirm this.
Probab=53.10 E-value=13 Score=29.84 Aligned_cols=43 Identities=35% Similarity=0.570 Sum_probs=34.8
Q ss_pred ccccCcchhccceEEEeeccccccCCCChHHHHHHHHHhCCcccCCC
Q 023055 185 KRFLHPDVVAAYEYIFIWDEDLGVEHFNGDKYMELVKKHGLDISQPG 231 (288)
Q Consensus 185 KRFLHPDiVa~YdYIFlWDEDLgVd~F~~~rYl~Ivk~~gLEISQPA 231 (288)
.-|+||.+-++--.|||.-|++||-. +=++-.++.|++||.-+
T Consensus 34 ~ay~~Pa~~~~~P~lWIP~D~~GvS~----~ei~~~~~~~v~~Sd~g 76 (95)
T PF12621_consen 34 HAYLHPAVSAPQPILWIPRDPLGVSR----QEIEETRKVGVPISDEG 76 (95)
T ss_pred hccCCHhHcCCCCeEEeecCCCCCCH----HHHHHhhcCCeEEECCC
Confidence 45999999999999999999999954 45566777787777544
No 5
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=49.62 E-value=13 Score=32.94 Aligned_cols=38 Identities=11% Similarity=0.038 Sum_probs=30.7
Q ss_pred cceEEEeeccccccCCCChHHHHHHHHHh--CCcccCCCc
Q 023055 195 AYEYIFIWDEDLGVEHFNGDKYMELVKKH--GLDISQPGL 232 (288)
Q Consensus 195 ~YdYIFlWDEDLgVd~F~~~rYl~Ivk~~--gLEISQPAL 232 (288)
.+|||++.|+|..++.-..++.++.+++. ..-+..|..
T Consensus 73 ~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 112 (281)
T TIGR01556 73 GVQGVLLLDQDSRPGNAFLAAQWKLLSAENGQACALGPRF 112 (281)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHhcCCceEEECCeE
Confidence 79999999999999877778888877766 566677754
No 6
>PRK01844 hypothetical protein; Provisional
Probab=47.96 E-value=6.6 Score=31.16 Aligned_cols=16 Identities=31% Similarity=0.904 Sum_probs=11.9
Q ss_pred HHHHHHHHhhheeEee
Q 023055 20 IITTFIGVLIGYFVGR 35 (288)
Q Consensus 20 i~~~~~~~~~gf~igi 35 (288)
|++.++|++.|||++-
T Consensus 11 I~~li~G~~~Gff~ar 26 (72)
T PRK01844 11 VVALVAGVALGFFIAR 26 (72)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5677788888888753
No 7
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=45.22 E-value=12 Score=31.54 Aligned_cols=41 Identities=5% Similarity=-0.056 Sum_probs=33.1
Q ss_pred ccceEEEeeccccccCCCChHHHHHHHHHhCCcccCCCccC
Q 023055 194 AAYEYIFIWDEDLGVEHFNGDKYMELVKKHGLDISQPGLEP 234 (288)
Q Consensus 194 a~YdYIFlWDEDLgVd~F~~~rYl~Ivk~~gLEISQPALd~ 234 (288)
+.+|||++.|.|..++.-..++.++.+...+..+.++....
T Consensus 76 a~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~v~~v~~~~~~ 116 (235)
T cd06434 76 VTTDIVVLLDSDTVWPPNALPEMLKPFEDPKVGGVGTNQRI 116 (235)
T ss_pred hCCCEEEEECCCceeChhHHHHHHHhccCCCEeEEcCceEe
Confidence 57999999999999987778888888777777777766543
No 8
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=45.12 E-value=22 Score=27.49 Aligned_cols=36 Identities=17% Similarity=0.255 Sum_probs=25.9
Q ss_pred cceEEEeeccccccCCCChHHHHHHHHHh-CCcccCC
Q 023055 195 AYEYIFIWDEDLGVEHFNGDKYMELVKKH-GLDISQP 230 (288)
Q Consensus 195 ~YdYIFlWDEDLgVd~F~~~rYl~Ivk~~-gLEISQP 230 (288)
.+|||++.|+|..++....+++++.+.+. +..+.++
T Consensus 74 ~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~ 110 (166)
T cd04186 74 KGDYVLLLNPDTVVEPGALLELLDAAEQDPDVGIVGP 110 (166)
T ss_pred CCCEEEEECCCcEECccHHHHHHHHHHhCCCceEEEc
Confidence 79999999999998777777777754433 4444444
No 9
>PF12996 DUF3880: DUF based on E. rectale Gene description (DUF3880); InterPro: IPR024542 This entry represents proteins of unknown function. The Eubacterium rectale gene appears to be upregulated in the presence of Bacteroides thetaiotaomicron compared to growth in pure culture [].
Probab=44.27 E-value=10 Score=28.93 Aligned_cols=26 Identities=27% Similarity=0.676 Sum_probs=19.7
Q ss_pred cchhccceEEEeeccccccCCCChHHHHHHHHHhCC
Q 023055 190 PDVVAAYEYIFIWDEDLGVEHFNGDKYMELVKKHGL 225 (288)
Q Consensus 190 PDiVa~YdYIFlWDEDLgVd~F~~~rYl~Ivk~~gL 225 (288)
..+...|||||+||.+ .++-.|+.|.
T Consensus 13 ~~i~~~~~~iFt~D~~----------~~~~~~~~G~ 38 (79)
T PF12996_consen 13 YSIANSYDYIFTFDRS----------FVEEYRNLGA 38 (79)
T ss_pred hhhCCCCCEEEEECHH----------HHHHHHHcCC
Confidence 3678899999999975 4566667773
No 10
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=43.21 E-value=21 Score=27.19 Aligned_cols=36 Identities=25% Similarity=0.236 Sum_probs=28.1
Q ss_pred ccceEEEeeccccccCCCChHHHHHHHHHhCCcccC
Q 023055 194 AAYEYIFIWDEDLGVEHFNGDKYMELVKKHGLDISQ 229 (288)
Q Consensus 194 a~YdYIFlWDEDLgVd~F~~~rYl~Ivk~~gLEISQ 229 (288)
+..|||++.|+|..++.-..+++++.+++.+-.+.-
T Consensus 77 a~~~~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~ 112 (169)
T PF00535_consen 77 AKGEYILFLDDDDIISPDWLEELVEALEKNPPDVVI 112 (169)
T ss_dssp --SSEEEEEETTEEE-TTHHHHHHHHHHHCTTEEEE
T ss_pred cceeEEEEeCCCceEcHHHHHHHHHHHHhCCCcEEE
Confidence 467799999999999888899999999997665433
No 11
>PF14538 Raptor_N: Raptor N-terminal CASPase like domain
Probab=42.84 E-value=15 Score=32.00 Aligned_cols=58 Identities=19% Similarity=0.491 Sum_probs=31.6
Q ss_pred hhHHhhhcc--cCcEEEEEEECCCCCccccccccCcceEEEEeccccceeeccccCcchhccce--------EEEeeccc
Q 023055 136 IDRMVKKFS--EDFQIMLFHYDGQTSQWDEFEWSKSAIHVSIRRQTKWWYAKRFLHPDVVAAYE--------YIFIWDED 205 (288)
Q Consensus 136 Vd~~v~KFs--~nF~vmLFHYDG~vd~W~d~eWs~~aIHVsa~kQtKWwfaKRFLHPDiVa~Yd--------YIFlWDED 205 (288)
+.+..++.. ..-.-+||||-|. .++. -..++.=|-|-|.+-.-.-++-|| -||+||++
T Consensus 77 ~~~~~~~~R~~a~~~RvLFHYnGh-----GvP~-------Pt~~GeIw~f~~~~tqyip~si~dL~~~lg~Psi~V~DC~ 144 (154)
T PF14538_consen 77 LKRLCQSLRRNAKDERVLFHYNGH-----GVPR-------PTENGEIWVFNKNYTQYIPLSIYDLQSWLGSPSIYVFDCS 144 (154)
T ss_pred HHHHHHHHHhhCCCceEEEEECCC-----CCCC-------CCCCCeEEEEcCCCCcceEEEHHHHHHhcCCCEEEEEECC
Confidence 344444443 2348999999983 1211 122344466766665333333333 57888876
No 12
>PRK11677 hypothetical protein; Provisional
Probab=41.72 E-value=9.6 Score=32.99 Aligned_cols=19 Identities=26% Similarity=0.364 Sum_probs=11.9
Q ss_pred hHHHHHHHHhhheeEeeee
Q 023055 19 LIITTFIGVLIGYFVGRSF 37 (288)
Q Consensus 19 ~i~~~~~~~~~gf~igisf 37 (288)
.++..++|+++|||+|-..
T Consensus 6 a~i~livG~iiG~~~~R~~ 24 (134)
T PRK11677 6 ALIGLVVGIIIGAVAMRFG 24 (134)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 3456666777777776543
No 13
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=40.52 E-value=9.9 Score=31.99 Aligned_cols=19 Identities=37% Similarity=0.817 Sum_probs=14.1
Q ss_pred hHHHHHHHHhhheeEeeee
Q 023055 19 LIITTFIGVLIGYFVGRSF 37 (288)
Q Consensus 19 ~i~~~~~~~~~gf~igisf 37 (288)
.|+..++|+++||+++-.+
T Consensus 2 ~~i~lvvG~iiG~~~~r~~ 20 (128)
T PF06295_consen 2 AIIGLVVGLIIGFLIGRLT 20 (128)
T ss_pred hHHHHHHHHHHHHHHHHHh
Confidence 3677788888888887544
No 14
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=39.03 E-value=24 Score=29.36 Aligned_cols=38 Identities=11% Similarity=0.017 Sum_probs=30.2
Q ss_pred ccceEEEeeccccccCCCChHHHHHHHHH-hCCcccCCC
Q 023055 194 AAYEYIFIWDEDLGVEHFNGDKYMELVKK-HGLDISQPG 231 (288)
Q Consensus 194 a~YdYIFlWDEDLgVd~F~~~rYl~Ivk~-~gLEISQPA 231 (288)
+.+|||.+.|.|..++.--.+++++.+.+ .++.+.++.
T Consensus 83 a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~v~~~ 121 (234)
T cd06421 83 TTGDFVAILDADHVPTPDFLRRTLGYFLDDPKVALVQTP 121 (234)
T ss_pred CCCCEEEEEccccCcCccHHHHHHHHHhcCCCeEEEecc
Confidence 47999999999999887777888888776 666666654
No 15
>PRK00523 hypothetical protein; Provisional
Probab=37.27 E-value=12 Score=29.68 Aligned_cols=15 Identities=47% Similarity=0.848 Sum_probs=11.1
Q ss_pred HHHHHHHHhhheeEe
Q 023055 20 IITTFIGVLIGYFVG 34 (288)
Q Consensus 20 i~~~~~~~~~gf~ig 34 (288)
|++.++|++.|||++
T Consensus 12 i~~li~G~~~Gffia 26 (72)
T PRK00523 12 IPLLIVGGIIGYFVS 26 (72)
T ss_pred HHHHHHHHHHHHHHH
Confidence 556777888888875
No 16
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=36.60 E-value=28 Score=29.11 Aligned_cols=38 Identities=16% Similarity=-0.011 Sum_probs=29.1
Q ss_pred ccceEEEeeccccccCCCChHHHHHHHHHhCCcccCCC
Q 023055 194 AAYEYIFIWDEDLGVEHFNGDKYMELVKKHGLDISQPG 231 (288)
Q Consensus 194 a~YdYIFlWDEDLgVd~F~~~rYl~Ivk~~gLEISQPA 231 (288)
+.+||+.+.|+|..++.-..++.++..++.+..+.+..
T Consensus 80 a~~d~v~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~~~ 117 (249)
T cd02525 80 SRGDIIIRVDAHAVYPKDYILELVEALKRTGADNVGGP 117 (249)
T ss_pred hCCCEEEEECCCccCCHHHHHHHHHHHhcCCCCEEecc
Confidence 37999999999998877667777777777676665543
No 17
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=34.77 E-value=17 Score=30.43 Aligned_cols=42 Identities=17% Similarity=0.234 Sum_probs=29.1
Q ss_pred ccceEEEeeccccccCCCChHHHHHHHHHhCCcccCCCccCC
Q 023055 194 AAYEYIFIWDEDLGVEHFNGDKYMELVKKHGLDISQPGLEPN 235 (288)
Q Consensus 194 a~YdYIFlWDEDLgVd~F~~~rYl~Ivk~~gLEISQPALd~~ 235 (288)
+.+|||++.|+|..++.--.+++++.+...+..+-|+.....
T Consensus 85 ~~~d~i~~lD~D~~~~p~~l~~~~~~~~~~~~~~v~~~~~~~ 126 (228)
T PF13641_consen 85 ARGDYILFLDDDTVLDPDWLERLLAAFADPGVGAVGGPVFPD 126 (228)
T ss_dssp ---SEEEEE-SSEEE-CHHHHHHHHHHHBSS--EEEEEEEET
T ss_pred cCCCEEEEECCCcEECHHHHHHHHHHHHhCCCCeEeeeEeec
Confidence 459999999999999888889988888777888877666443
No 18
>PF14654 Epiglycanin_C: Mucin, catalytic, TM and cytoplasmic tail region
Probab=33.24 E-value=16 Score=30.93 Aligned_cols=29 Identities=24% Similarity=0.410 Sum_probs=20.7
Q ss_pred CCCCCchh---hHHHHHHH--HhhheeEeeeecc
Q 023055 11 KKTNDGGR---LIITTFIG--VLIGYFVGRSFQS 39 (288)
Q Consensus 11 ~~~~~~m~---~i~~~~~~--~~~gf~igisfp~ 39 (288)
-||+-+.+ +|+.+++. +++|+|+|++|=+
T Consensus 9 ~KPsGsL~PWeIfLItLasVvvavGl~aGLfFcv 42 (106)
T PF14654_consen 9 VKPSGSLKPWEIFLITLASVVVAVGLFAGLFFCV 42 (106)
T ss_pred cccCCCccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 57777777 44444444 6789999999844
No 19
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=32.79 E-value=41 Score=30.27 Aligned_cols=41 Identities=10% Similarity=0.060 Sum_probs=35.4
Q ss_pred ccceEEEeeccccccCCCChHHHHHHHHHhCCcccCCCccC
Q 023055 194 AAYEYIFIWDEDLGVEHFNGDKYMELVKKHGLDISQPGLEP 234 (288)
Q Consensus 194 a~YdYIFlWDEDLgVd~F~~~rYl~Ivk~~gLEISQPALd~ 234 (288)
+..|||.+.|.|..++.--.+++++.+.++.-.+.-|.++.
T Consensus 82 A~gd~i~fLD~D~~~~~~wL~~ll~~l~~~~~~~v~p~~~~ 122 (299)
T cd02510 82 ATGDVLVFLDSHCEVNVGWLEPLLARIAENRKTVVCPIIDV 122 (299)
T ss_pred ccCCEEEEEeCCcccCccHHHHHHHHHHhCCCeEEEeeecc
Confidence 67899999999999988888999999998877777777654
No 20
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=31.76 E-value=26 Score=29.64 Aligned_cols=36 Identities=19% Similarity=0.152 Sum_probs=26.6
Q ss_pred cceEEEeeccccccCCCChHHHHHHHHHhCCcccCC
Q 023055 195 AYEYIFIWDEDLGVEHFNGDKYMELVKKHGLDISQP 230 (288)
Q Consensus 195 ~YdYIFlWDEDLgVd~F~~~rYl~Ivk~~gLEISQP 230 (288)
.||||.+.|.|..++.-...+.++.+++.+..+.|+
T Consensus 84 ~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~ 119 (236)
T cd06435 84 DAEIIAVIDADYQVEPDWLKRLVPIFDDPRVGFVQA 119 (236)
T ss_pred CCCEEEEEcCCCCcCHHHHHHHHHHhcCCCeeEEec
Confidence 399999999998887666666766666556665554
No 21
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=29.59 E-value=48 Score=27.08 Aligned_cols=38 Identities=21% Similarity=0.297 Sum_probs=26.0
Q ss_pred ccceEEEeeccccccCCCChHHHHHHHHHh-CCcccCCC
Q 023055 194 AAYEYIFIWDEDLGVEHFNGDKYMELVKKH-GLDISQPG 231 (288)
Q Consensus 194 a~YdYIFlWDEDLgVd~F~~~rYl~Ivk~~-gLEISQPA 231 (288)
+.+|||++.|.|..++.-..++.++.+.++ +..+....
T Consensus 79 a~gd~i~~lD~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~ 117 (201)
T cd04195 79 CTYDWVARMDTDDISLPDRFEKQLDFIEKNPEIDIVGGG 117 (201)
T ss_pred cCCCEEEEeCCccccCcHHHHHHHHHHHhCCCeEEEccc
Confidence 579999999999877655556666655443 45555544
No 22
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=28.27 E-value=20 Score=31.92 Aligned_cols=18 Identities=22% Similarity=0.499 Sum_probs=12.3
Q ss_pred HHHHHHHHhhheeEeeee
Q 023055 20 IITTFIGVLIGYFVGRSF 37 (288)
Q Consensus 20 i~~~~~~~~~gf~igisf 37 (288)
|+++++|+++|+++|..+
T Consensus 3 ii~~i~~~~vG~~~G~~~ 20 (201)
T PF12072_consen 3 IIIAIVALIVGIGIGYLV 20 (201)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666777777777777554
No 23
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=27.96 E-value=46 Score=27.81 Aligned_cols=34 Identities=21% Similarity=0.316 Sum_probs=22.6
Q ss_pred ccceEEEeeccccccCCCChHHHHHHHHHhCCcc
Q 023055 194 AAYEYIFIWDEDLGVEHFNGDKYMELVKKHGLDI 227 (288)
Q Consensus 194 a~YdYIFlWDEDLgVd~F~~~rYl~Ivk~~gLEI 227 (288)
+.+|||++.|.|..++.--.++.++.....+..+
T Consensus 85 a~~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~~~ 118 (196)
T cd02520 85 ARYDILVISDSDISVPPDYLRRMVAPLMDPGVGL 118 (196)
T ss_pred CCCCEEEEECCCceEChhHHHHHHHHhhCCCCCe
Confidence 5799999999998776555555555543333333
No 24
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=27.93 E-value=69 Score=26.09 Aligned_cols=27 Identities=33% Similarity=0.437 Sum_probs=18.6
Q ss_pred hccceEEEeeccccccCCCChHHHHHHHHH
Q 023055 193 VAAYEYIFIWDEDLGVEHFNGDKYMELVKK 222 (288)
Q Consensus 193 Va~YdYIFlWDEDLgVd~F~~~rYl~Ivk~ 222 (288)
.+.+|||++.|.|.. +.|+..-++++.
T Consensus 77 ~~~g~~v~~ld~Dd~---~~~~~l~~~~~~ 103 (214)
T cd04196 77 AADGDYVFFCDQDDI---WLPDKLERLLKA 103 (214)
T ss_pred hCCCCEEEEECCCcc---cChhHHHHHHHH
Confidence 357999999999954 455555555544
No 25
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=27.46 E-value=34 Score=29.14 Aligned_cols=37 Identities=24% Similarity=0.134 Sum_probs=26.5
Q ss_pred ccceEEEeeccccccCCCChHHHHHHHHHhCCcccCC
Q 023055 194 AAYEYIFIWDEDLGVEHFNGDKYMELVKKHGLDISQP 230 (288)
Q Consensus 194 a~YdYIFlWDEDLgVd~F~~~rYl~Ivk~~gLEISQP 230 (288)
+.+|||++.|.|..++.-..+++.......+....|+
T Consensus 86 a~~~~i~~~DaD~~~~~~~l~~~~~~~~~~~v~~v~~ 122 (232)
T cd06437 86 AKGEYVAIFDADFVPPPDFLQKTPPYFADPKLGFVQT 122 (232)
T ss_pred CCCCEEEEEcCCCCCChHHHHHhhhhhcCCCeEEEec
Confidence 4799999999999987666666666554444444444
No 26
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=23.39 E-value=1.3e+02 Score=26.69 Aligned_cols=44 Identities=18% Similarity=0.533 Sum_probs=34.1
Q ss_pred CCChHHHHHHHHHhCCcccCCCccCCCCcceeeeeeeCCceeeeeeccCCC
Q 023055 210 HFNGDKYMELVKKHGLDISQPGLEPNNGLTWQMTKRRGDQEVHKVTEEKPG 260 (288)
Q Consensus 210 ~F~~~rYl~Ivk~~gLEISQPALd~~s~i~h~iT~R~~~~~vHr~~~~~~g 260 (288)
.|+-+.+.+.+ +|++||.+|.+. |.+...+++.+|++|-.++.|
T Consensus 4 ~~~~~~~~~~~----~~~~~~~~~~~~---W~l~~~~~~i~Vy~r~~~~s~ 47 (207)
T cd08910 4 TFSEEQFREAC----AELQQPALDGAA---WELLVESSGISIYRLLDEQSG 47 (207)
T ss_pred ccCHHHHHHHH----HHhcCCCCCCCC---eEEEEecCCeEEEEeccCCCC
Confidence 46777777776 689999998775 889898999999987554443
No 27
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=22.87 E-value=67 Score=23.51 Aligned_cols=37 Identities=22% Similarity=0.086 Sum_probs=24.5
Q ss_pred cceEEEeeccccccCCCChHHH-HHHHHHhCCcccCCC
Q 023055 195 AYEYIFIWDEDLGVEHFNGDKY-MELVKKHGLDISQPG 231 (288)
Q Consensus 195 ~YdYIFlWDEDLgVd~F~~~rY-l~Ivk~~gLEISQPA 231 (288)
.+||+++.|.|.-++.-..++. ....+..+..+.++.
T Consensus 77 ~~d~v~~~d~D~~~~~~~~~~~~~~~~~~~~~~~v~~~ 114 (156)
T cd00761 77 RGEYILFLDADDLLLPDWLERLVAELLADPEADAVGGP 114 (156)
T ss_pred cCCEEEEECCCCccCccHHHHHHHHHhcCCCceEEecc
Confidence 6999999999988766555554 333344456655554
No 28
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=22.50 E-value=94 Score=24.71 Aligned_cols=27 Identities=11% Similarity=-0.181 Sum_probs=21.2
Q ss_pred ccceEEEeeccccccCCCChHHHHHHH
Q 023055 194 AAYEYIFIWDEDLGVEHFNGDKYMELV 220 (288)
Q Consensus 194 a~YdYIFlWDEDLgVd~F~~~rYl~Iv 220 (288)
+..|||++.|+|..++.-...+.++..
T Consensus 74 a~~~~v~~ld~D~~~~~~~~~~~~~~~ 100 (202)
T cd06433 74 ATGDIIGFLNSDDTLLPGALLAVVAAF 100 (202)
T ss_pred cCCCEEEEeCCCcccCchHHHHHHHHH
Confidence 468999999999998877777766433
No 29
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=22.20 E-value=52 Score=24.75 Aligned_cols=22 Identities=14% Similarity=0.080 Sum_probs=16.7
Q ss_pred cceEEEeeccccccCCCChHHH
Q 023055 195 AYEYIFIWDEDLGVEHFNGDKY 216 (288)
Q Consensus 195 ~YdYIFlWDEDLgVd~F~~~rY 216 (288)
.+|||.+.|.|.-++.-..+++
T Consensus 78 ~~~~i~~~D~D~~~~~~~l~~~ 99 (180)
T cd06423 78 KGDIVVVLDADTILEPDALKRL 99 (180)
T ss_pred CCCEEEEECCCCCcChHHHHHH
Confidence 7999999999987765444444
No 30
>PF03314 DUF273: Protein of unknown function, DUF273; InterPro: IPR004988 This is a family of proteins of unknown function.
Probab=21.44 E-value=58 Score=30.77 Aligned_cols=38 Identities=21% Similarity=0.489 Sum_probs=27.2
Q ss_pred cceeecccc-CcchhccceEEEeeccccccCCCC--hHHHH
Q 023055 180 KWWYAKRFL-HPDVVAAYEYIFIWDEDLGVEHFN--GDKYM 217 (288)
Q Consensus 180 KWwfaKRFL-HPDiVa~YdYIFlWDEDLgVd~F~--~~rYl 217 (288)
|=||.+|.- =-.++..||+|++.|-|+||-|-+ +|+|+
T Consensus 25 kd~fFrRHCvva~~L~~~~~vlflDaDigVvNp~~~iEefi 65 (222)
T PF03314_consen 25 KDKFFRRHCVVAKILPEYDWVLFLDADIGVVNPNRRIEEFI 65 (222)
T ss_pred hhHHHHHHHHHHHHhccCCEEEEEcCCceeecCcccHHHhc
Confidence 335555543 236778899999999999997655 46665
No 31
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=21.14 E-value=75 Score=25.90 Aligned_cols=36 Identities=14% Similarity=0.148 Sum_probs=25.8
Q ss_pred ccceEEEeeccccccCCCChHHHHHHH-HHhCCcccC
Q 023055 194 AAYEYIFIWDEDLGVEHFNGDKYMELV-KKHGLDISQ 229 (288)
Q Consensus 194 a~YdYIFlWDEDLgVd~F~~~rYl~Iv-k~~gLEISQ 229 (288)
+.+|||++.|.|-.++.-..++.++.+ +..+..+-+
T Consensus 82 a~~d~i~~ld~D~~~~~~~l~~~~~~~~~~~~~~~v~ 118 (202)
T cd04184 82 ATGEFVALLDHDDELAPHALYEVVKALNEHPDADLIY 118 (202)
T ss_pred hcCCEEEEECCCCcCChHHHHHHHHHHHhCCCCCEEE
Confidence 568999999999988666667777766 444454443
No 32
>PF01060 DUF290: Transthyretin-like family; InterPro: IPR001534 This new apparently nematode-specific protein family has been called family 2 []. The proteins show weak similarity to transthyretin (formerly called prealbumin) which transports thyroid hormones. The specific function of this protein is unknown.; GO: 0005615 extracellular space
Probab=21.12 E-value=2.7e+02 Score=21.22 Aligned_cols=19 Identities=21% Similarity=0.249 Sum_probs=15.4
Q ss_pred CCCCCCCCCccceeeeehh
Q 023055 261 WCSDPHLPPCAAYALHLSL 279 (288)
Q Consensus 261 ~C~~~~~pPCtgfVE~MAP 279 (288)
.|.+...-||...+++..|
T Consensus 62 ~C~~~~~~~C~r~~~~~IP 80 (80)
T PF01060_consen 62 KCNDEGYKPCQRKIKIDIP 80 (80)
T ss_pred eCCCCCCcCceEeEEEECC
Confidence 5887544899999999887
No 33
>PRK13863 type IV secretion system T-DNA border endonuclease VirD2; Provisional
Probab=21.05 E-value=99 Score=31.92 Aligned_cols=92 Identities=20% Similarity=0.386 Sum_probs=54.9
Q ss_pred ceEEEEEeccccccchh----HHhhhccc-----Cc-EEEEEEECCCCCccccccccCcceEEEEe---cccc-ceeecc
Q 023055 121 KYLLTITVGLNQKKNID----RMVKKFSE-----DF-QIMLFHYDGQTSQWDEFEWSKSAIHVSIR---RQTK-WWYAKR 186 (288)
Q Consensus 121 k~Lla~~VG~kqk~~Vd----~~v~KFs~-----nF-~vmLFHYDG~vd~W~d~eWs~~aIHVsa~---kQtK-WwfaKR 186 (288)
.-+|.|+.|-++.+..+ .+-++|.+ +| -|+-+|-|- + ---+||++. +-.| |-+..+
T Consensus 84 NIVLSMPaGTd~eAVrdAARefA~E~FgsG~~G~~~dYV~AlH~D~--d--------HPHVHLvVnrRd~~G~~~lri~~ 153 (446)
T PRK13863 84 HIIVSFPAGTSQVAAYAASREWAAEMFGSGAGGGRYNYLTAFHIDR--D--------HPHLHVVVNRRELLGHGWLKISR 153 (446)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHHHhCCCCCCCceeEEEEEecCC--C--------CCeEEEEEEeecCCCCceeeecC
Confidence 37899999977766555 23355553 34 367789876 1 345899888 5555 533322
Q ss_pred ccCcchhccceEEEeeccccccCCCChHHHHHHHHHhCCcccCCCccCCCCcceeee
Q 023055 187 FLHPDVVAAYEYIFIWDEDLGVEHFNGDKYMELVKKHGLDISQPGLEPNNGLTWQMT 243 (288)
Q Consensus 187 FLHPDiVa~YdYIFlWDEDLgVd~F~~~rYl~Ivk~~gLEISQPALd~~s~i~h~iT 243 (288)
.|+++ .++.+ -++|-++.+++|++ |+...-..--+|
T Consensus 154 -rk~dl--------------Nld~~-Re~FAE~LRe~GIe-----aeAT~R~eRGIt 189 (446)
T PRK13863 154 -RHPQL--------------NYDAL-RIKMAEISLRHGIV-----LDATSRAERGIT 189 (446)
T ss_pred -CCccc--------------cHHHH-HHHHHHHHHhcCce-----eeccchhhcCcc
Confidence 23332 11111 36799999999999 565543333344
No 34
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=20.77 E-value=88 Score=21.71 Aligned_cols=21 Identities=19% Similarity=0.397 Sum_probs=18.0
Q ss_pred CCChHHHHHHHHHhCCcccCC
Q 023055 210 HFNGDKYMELVKKHGLDISQP 230 (288)
Q Consensus 210 ~F~~~rYl~Ivk~~gLEISQP 230 (288)
.-+++..++|++++|.+++.-
T Consensus 26 ~~~~~e~~~lA~~~Gy~ft~~ 46 (49)
T PF07862_consen 26 CQNPEEVVALAREAGYDFTEE 46 (49)
T ss_pred cCCHHHHHHHHHHcCCCCCHH
Confidence 348999999999999999853
No 35
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=20.60 E-value=83 Score=26.43 Aligned_cols=23 Identities=17% Similarity=0.310 Sum_probs=18.3
Q ss_pred cceEEEeeccccccCCCChHHHH
Q 023055 195 AYEYIFIWDEDLGVEHFNGDKYM 217 (288)
Q Consensus 195 ~YdYIFlWDEDLgVd~F~~~rYl 217 (288)
.||||++.|.|..++.-..++++
T Consensus 75 ~~d~v~~lD~D~~~~~~~l~~l~ 97 (237)
T cd02526 75 GADYVLLFDQDSVPPPDMVEKLL 97 (237)
T ss_pred CCCEEEEECCCCCcCHhHHHHHH
Confidence 58999999999998755555554
No 36
>PF11688 DUF3285: Protein of unknown function (DUF3285); InterPro: IPR021702 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=20.10 E-value=28 Score=25.56 Aligned_cols=26 Identities=27% Similarity=0.459 Sum_probs=18.7
Q ss_pred CCCCCchhhHHHHHHHHhhheeEeeee
Q 023055 11 KKTNDGGRLIITTFIGVLIGYFVGRSF 37 (288)
Q Consensus 11 ~~~~~~m~~i~~~~~~~~~gf~igisf 37 (288)
||-..+++.+..+.+| ++||+||+++
T Consensus 17 RKg~~SL~HF~LT~~g-ll~~lv~la~ 42 (45)
T PF11688_consen 17 RKGGTSLFHFGLTAVG-LLGFLVGLAY 42 (45)
T ss_pred HccCcchhHHHHHHHH-HHHHHHHHHH
Confidence 6667778866666665 5789988874
Done!