Query 023055
Match_columns 288
No_of_seqs 126 out of 145
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 15:35:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023055.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023055hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bcv_A Putative glycosyltransf 42.7 17 0.00057 29.2 3.1 108 119-231 4-120 (240)
2 3sd4_A PHD finger protein 20; 37.4 21 0.00071 25.8 2.6 15 149-163 42-56 (69)
3 2ls4_A High affinity copper up 41.4 8 0.00027 24.3 0.0 15 19-33 5-19 (26)
4 2eqm_A PHD finger protein 20-l 33.1 24 0.00084 27.0 2.4 24 149-172 49-73 (88)
5 1qg8_A Protein (spore coat pol 30.9 24 0.00082 28.6 2.2 38 194-231 87-125 (255)
6 2c0n_A A197; thermophil protei 27.3 23 0.00077 31.7 1.5 30 194-227 52-84 (203)
7 2kjw_A TS9, 30S ribosomal prot 23.1 30 0.001 27.0 1.4 55 163-229 25-81 (96)
8 2ffu_A Ppgalnact-2, polypeptid 22.9 38 0.0013 31.5 2.2 40 193-232 144-183 (501)
9 1o7q_A N-acetyllactosaminide a 21.6 74 0.0025 29.7 3.9 84 121-208 50-151 (289)
10 4dix_A Plectin-related protein 20.3 99 0.0034 28.1 4.3 39 135-180 106-144 (230)
No 1
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}
Probab=42.73 E-value=17 Score=29.18 Aligned_cols=108 Identities=20% Similarity=0.175 Sum_probs=59.8
Q ss_pred CCceEEEEEeccccccchhHHhhhcc----cCcEEEEEEECCCCCccccc--ccc--CcceEEEE-eccccceeeccccC
Q 023055 119 KPKYLLTITVGLNQKKNIDRMVKKFS----EDFQIMLFHYDGQTSQWDEF--EWS--KSAIHVSI-RRQTKWWYAKRFLH 189 (288)
Q Consensus 119 ~~k~Lla~~VG~kqk~~Vd~~v~KFs----~nF~vmLFHYDG~vd~W~d~--eWs--~~aIHVsa-~kQtKWwfaKRFLH 189 (288)
.|+.-+.+++ ++..+.+.++++-.. .+|.|++ .=||..|+=.++ ++. ...|++.. .++.+ -+.|..
T Consensus 4 ~p~vsViIp~-yn~~~~l~~~l~Sl~~q~~~~~eiIv-vDd~S~d~t~~~~~~~~~~~~~i~~i~~~n~G~--~~a~N~- 78 (240)
T 3bcv_A 4 IPKVSVIVPI-YNVEKYLDQCVQALLAQTLSDIEIIL-IDDESPDNCPKICDDYAAQYPNIKVIHKKNAGL--GMACNS- 78 (240)
T ss_dssp CCSEEEEEEE-SSCTTTHHHHHHHHHTCSSSSEEEEE-EECCCSSSHHHHHHHHHHHCSSEEEEECCCCCH--HHHHHH-
T ss_pred CCcEEEEEec-CCCHHHHHHHHHHHHhCcCCCeEEEE-EECCCCcCHHHHHHHHHhhCCCEEEEECCCCCh--HHHHHH-
Confidence 3455556665 555566666665552 4677554 568887763221 111 11233321 11110 000100
Q ss_pred cchhccceEEEeeccccccCCCChHHHHHHHHHhCCcccCCC
Q 023055 190 PDVVAAYEYIFIWDEDLGVEHFNGDKYMELVKKHGLDISQPG 231 (288)
Q Consensus 190 PDiVa~YdYIFlWDEDLgVd~F~~~rYl~Ivk~~gLEISQPA 231 (288)
-=-.+..|||++.|.|.-++.--.++.++.+++.+.++...+
T Consensus 79 g~~~a~g~~i~~lD~Dd~~~~~~l~~l~~~~~~~~~~~v~~~ 120 (240)
T 3bcv_A 79 GLDVATGEYVAFCDSDDYVDSDMYMTMYNVAQKYTCDAVFTG 120 (240)
T ss_dssp HHHHCCSSEEEECCTTCCCCTTHHHHHHHHHHHHTCSEEEC-
T ss_pred HHHHcCCCEEEEECCCCcCCHHHHHHHHHHHHhcCCCEEEEe
Confidence 001356799999999988877778888888888777766543
No 2
>3sd4_A PHD finger protein 20; tudor domain, transcription; 1.93A {Homo sapiens} PDB: 3q1j_A
Probab=37.43 E-value=21 Score=25.80 Aligned_cols=15 Identities=27% Similarity=0.592 Sum_probs=11.1
Q ss_pred EEEEEECCCCCcccc
Q 023055 149 IMLFHYDGQTSQWDE 163 (288)
Q Consensus 149 vmLFHYDG~vd~W~d 163 (288)
.+|.||||--+.|++
T Consensus 42 ~~~VhfdGw~~~~D~ 56 (69)
T 3sd4_A 42 KVLIHFKRWNHRYDE 56 (69)
T ss_dssp EEEEEETTSCGGGCE
T ss_pred EEEEEeCCCCCCCCE
Confidence 469999997666653
No 3
>2ls4_A High affinity copper uptake protein 1; HCTR1 TMDS, oligomerization, metal transport; NMR {Homo sapiens}
Probab=41.36 E-value=8 Score=24.29 Aligned_cols=15 Identities=40% Similarity=0.651 Sum_probs=12.2
Q ss_pred hHHHHHHHHhhheeE
Q 023055 19 LIITTFIGVLIGYFV 33 (288)
Q Consensus 19 ~i~~~~~~~~~gf~i 33 (288)
+++++++|+.+|+|+
T Consensus 5 l~iavvlGa~~Gyf~ 19 (26)
T 2ls4_A 5 LCIAVAAGAGTGYFL 19 (26)
Confidence 577888888888876
No 4
>2eqm_A PHD finger protein 20-like 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2jtf_A
Probab=33.11 E-value=24 Score=27.02 Aligned_cols=24 Identities=25% Similarity=0.673 Sum_probs=15.6
Q ss_pred EEEEEECCCCCcccc-ccccCcceE
Q 023055 149 IMLFHYDGQTSQWDE-FEWSKSAIH 172 (288)
Q Consensus 149 vmLFHYDG~vd~W~d-~eWs~~aIH 172 (288)
-+|.||||--+.|++ .+++..-||
T Consensus 49 ~v~VHfdGW~~~yDeWv~~dS~~I~ 73 (88)
T 2eqm_A 49 KMLVHFERWSHRYDEWIYWDSNRLR 73 (88)
T ss_dssp EEEEEESSSTTTEEEEEETTSCCEE
T ss_pred EEEEEECCCCCcccEEeeCCCCcEe
Confidence 489999997777764 344444444
No 5
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=30.90 E-value=24 Score=28.62 Aligned_cols=38 Identities=18% Similarity=-0.012 Sum_probs=28.7
Q ss_pred ccceEEEeeccccccCCCChHHHHHHHHHh-CCcccCCC
Q 023055 194 AAYEYIFIWDEDLGVEHFNGDKYMELVKKH-GLDISQPG 231 (288)
Q Consensus 194 a~YdYIFlWDEDLgVd~F~~~rYl~Ivk~~-gLEISQPA 231 (288)
+..|||++.|+|.-++.-..++.++.++++ +..+..+.
T Consensus 87 a~g~~i~~lD~Dd~~~~~~l~~~~~~~~~~~~~~~v~~~ 125 (255)
T 1qg8_A 87 AEGEYITYATDDNIYMPDRLLKMVRELDTHPEKAVIYSA 125 (255)
T ss_dssp CCCSEEEEEETTEEECTTHHHHHHHHHHHCTTCCEEEEE
T ss_pred cCCCEEEEeCCCCccChHHHHHHHHHHHhCCCceEEEec
Confidence 578999999999988766677788877765 55554443
No 6
>2c0n_A A197; thermophil protein, thermophilic virus, STIV, sulfolobus turreted ICOS virus; 1.86A {Sulfolobus turreted icosahedral virus}
Probab=27.32 E-value=23 Score=31.66 Aligned_cols=30 Identities=20% Similarity=0.464 Sum_probs=21.2
Q ss_pred ccceEEEeeccc---cccCCCChHHHHHHHHHhCCcc
Q 023055 194 AAYEYIFIWDED---LGVEHFNGDKYMELVKKHGLDI 227 (288)
Q Consensus 194 a~YdYIFlWDED---LgVd~F~~~rYl~Ivk~~gLEI 227 (288)
..|||+++.|.| ++.+--++.|++ ++|.+|
T Consensus 52 ~~~dhllfIDAD~~~I~FdPe~V~rLl----~~g~DV 84 (203)
T 2c0n_A 52 KDYDTLAFLDEDVVPIEIDFQKVEAKF----NEGYDV 84 (203)
T ss_dssp TTCCEEEEECTTEEEEECCHHHHHHHH----HHTCSE
T ss_pred CCCCEEEEEeCCCCccccCHHHHHHHH----hCCCCE
Confidence 369999999999 776555555555 556665
No 7
>2kjw_A TS9, 30S ribosomal protein S6; S6 permutant, solution structure, backbone dynamics, folding, ribonucleoprotein, RNA-binding, rRNA-binding; NMR {Thermus thermophilus}
Probab=23.12 E-value=30 Score=27.04 Aligned_cols=55 Identities=13% Similarity=0.221 Sum_probs=41.0
Q ss_pred cccccCcceEEEEeccccceeeccccCcchhccceEEEeeccccccCCCC--hHHHHHHHHHhCCcccC
Q 023055 163 EFEWSKSAIHVSIRRQTKWWYAKRFLHPDVVAAYEYIFIWDEDLGVEHFN--GDKYMELVKKHGLDISQ 229 (288)
Q Consensus 163 d~eWs~~aIHVsa~kQtKWwfaKRFLHPDiVa~YdYIFlWDEDLgVd~F~--~~rYl~Ivk~~gLEISQ 229 (288)
.+.-++..+-+...+..+ ...||-+|+.+-|+.=+.-. .++|-+++.+.|-+|-.
T Consensus 25 ~~r~~e~vlR~l~v~~e~------------Mr~YE~m~Il~P~l~ee~~~~~ve~~~~iI~~~gG~i~~ 81 (96)
T 2kjw_A 25 ELRIRDNVRRVMVVASTT------------PGRYEVNIVLNPNLDQSQLALEKEIIQRALENYGARVEK 81 (96)
T ss_dssp HHHHCTTCSEEEEEECSS------------SSCEEEEEECCSSCCHHHHHHHHHHHHHHHHHHTCCCSC
T ss_pred Hhccchhhhhhhheehhh------------hhhhheeeeeCCCCCHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 355566666665555543 45899999999998766555 58999999999988754
No 8
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Probab=22.92 E-value=38 Score=31.45 Aligned_cols=40 Identities=13% Similarity=0.117 Sum_probs=34.5
Q ss_pred hccceEEEeeccccccCCCChHHHHHHHHHhCCcccCCCc
Q 023055 193 VAAYEYIFIWDEDLGVEHFNGDKYMELVKKHGLDISQPGL 232 (288)
Q Consensus 193 Va~YdYIFlWDEDLgVd~F~~~rYl~Ivk~~gLEISQPAL 232 (288)
.+..|||++.|.|..++.--.+++++.+++..-.+..|.+
T Consensus 144 ~A~gd~i~flD~D~~~~p~~L~~ll~~~~~~~~~vv~~~~ 183 (501)
T 2ffu_A 144 AAQAKVLTFLDSHCECNEHWLEPLLERVAEDRTRVVSPII 183 (501)
T ss_dssp HCCSSEEEECCSSEEECTTCHHHHHHHHHHCTTEEEEEEE
T ss_pred hcCCCEEEEECCCcccCccHHHHHHHHHHhCCCeEEEeee
Confidence 3578999999999999988899999999988777777765
No 9
>1o7q_A N-acetyllactosaminide alpha-1,3- galactosyltransferase; 3-galactosyltransferase-UDP complex, glycosyltransferase, glycoprotein, transmembrane; HET: GAL NAG UDP; 1.3A {Bos taurus} SCOP: c.68.1.9 PDB: 1gwv_A* 1gx0_A* 1gww_A* 1k4v_A* 1gx4_A* 2jco_A 1g8o_A* 1fg5_N* 1g93_A* 2wgz_A* 1o7o_A* 2vs4_A* 2jck_A* 2jcl_A 2vfz_A* 2vs3_A* 1vzu_A* 1vzx_A* 1vzt_A* 2jcj_A* ...
Probab=21.55 E-value=74 Score=29.70 Aligned_cols=84 Identities=15% Similarity=0.224 Sum_probs=54.7
Q ss_pred ceEEEEEeccccccchhHHhhhc--------ccCcEEEEEEECCCCCccccccccC-cceEEEEecccccee---ecc--
Q 023055 121 KYLLTITVGLNQKKNIDRMVKKF--------SEDFQIMLFHYDGQTSQWDEFEWSK-SAIHVSIRRQTKWWY---AKR-- 186 (288)
Q Consensus 121 k~Lla~~VG~kqk~~Vd~~v~KF--------s~nF~vmLFHYDG~vd~W~d~eWs~-~aIHVsa~kQtKWwf---aKR-- 186 (288)
--|+.+|+|-=. +.-+++| =-++.|.-|.+=...+.--.+++.. |.++|....|.++|= ..|
T Consensus 50 IGl~vfa~GkY~----~~fl~~Fl~SAEk~Fm~g~~v~YYVFTD~~~~~p~v~l~~~r~~~V~~i~~~~~W~d~sm~Rm~ 125 (289)
T 1o7q_A 50 VGLTVFAVGRYI----EHYLEEFLTSANKHFMVGHPVIFYIMVDDVSRMPLIELGPLRSFKVFKIKPEKRWQDISMMRMK 125 (289)
T ss_dssp EEEEEEECTTHH----HHHHHHHHHHHHHHBSTTSCEEEEEEESCGGGCCCCCCCTTEEEEEEECCCCSSHHHHHHHHHH
T ss_pred EEEEEEEecccH----HHHHHHHHHHHHHhccCCCeEEEEEEeCChhhCCccccCCCCeEEEEEeccccCCchhHHHHHH
Confidence 468889998643 3445555 3567887777733333333455554 458888888888872 233
Q ss_pred -cc---CcchhccceEEEeecccccc
Q 023055 187 -FL---HPDVVAAYEYIFIWDEDLGV 208 (288)
Q Consensus 187 -FL---HPDiVa~YdYIFlWDEDLgV 208 (288)
|+ .-++..+.||+|..|-|...
T Consensus 126 ~i~~~~~~~~~~evDYLf~~dvd~~F 151 (289)
T 1o7q_A 126 TIGEHIVAHIQHEVDFLFCMDVDQVF 151 (289)
T ss_dssp HHHHHHHHTHHHHCSEEEEECSSEEE
T ss_pred HHHHHHHHHHhhcCCEEEEeeCCcEe
Confidence 33 25668899999999987543
No 10
>4dix_A Plectin-related protein; PH domain, IG domain, malonate ION, beta sheet, PH superfold cytosolic, protein binding; 1.70A {Arabidopsis thaliana}
Probab=20.34 E-value=99 Score=28.12 Aligned_cols=39 Identities=18% Similarity=0.407 Sum_probs=32.1
Q ss_pred chhHHhhhcccCcEEEEEEECCCCCccccccccCcceEEEEecccc
Q 023055 135 NIDRMVKKFSEDFQIMLFHYDGQTSQWDEFEWSKSAIHVSIRRQTK 180 (288)
Q Consensus 135 ~Vd~~v~KFs~nF~vmLFHYDG~vd~W~d~eWs~~aIHVsa~kQtK 180 (288)
.|+++++|=...|.|++..+.| -+|.+.++||..+..+.
T Consensus 106 yVEaL~rk~~tEFNVvv~q~nG-------~d~~s~sihvl~vgk~R 144 (230)
T 4dix_A 106 YVEALVRKHDVDFNVVVTQMSG-------EDHTSESIHLFHVGKMR 144 (230)
T ss_dssp HHHHHHTTSEEEEEEEEEEETT-------EECCCCCEEEEEEESSE
T ss_pred HHHHHhhcCCCcEEEEEEEEcC-------ccCccceEEEEEeccEE
Confidence 4899999988999999999999 56778899987665443
Done!