Query 023055
Match_columns 288
No_of_seqs 126 out of 145
Neff 3.3
Searched_HMMs 13730
Date Mon Mar 25 15:35:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023055.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/023055hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vl2a1 c.26.2.1 (A:2-169) Arg 20.8 19 0.0014 24.7 1.7 35 119-156 1-35 (168)
2 d1vyua1 b.34.2.1 (A:39-174) SH 19.6 13 0.00096 28.6 0.5 42 146-187 23-71 (136)
3 d1omza_ c.68.1.15 (A:) Alpha-1 18.9 17 0.0012 25.9 1.0 99 124-224 7-110 (265)
4 d2qeda1 d.157.1.2 (A:1-251) Gl 18.5 40 0.0029 27.4 3.4 35 193-228 10-47 (251)
5 d1foba_ c.1.8.3 (A:) Beta-1,4- 17.0 27 0.002 29.6 2.0 41 102-156 42-84 (334)
6 d1qg8a_ c.68.1.1 (A:) Spore co 15.9 37 0.0027 25.7 2.5 101 121-223 2-116 (255)
7 d1xhba2 c.68.1.17 (A:95-422) P 15.6 36 0.0026 27.0 2.4 41 193-233 105-145 (328)
8 d2q78a1 d.38.1.7 (A:1-130) Unc 15.0 19 0.0014 27.6 0.5 37 200-236 22-61 (130)
9 d1dkca_ g.3.4.2 (A:) Antifunga 14.8 22 0.0016 22.5 0.6 18 257-274 5-24 (38)
10 d1s4na_ c.68.1.16 (A:) Glycoli 14.1 37 0.0027 29.9 2.2 34 188-225 130-166 (339)
No 1
>d1vl2a1 c.26.2.1 (A:2-169) Argininosuccinate synthetase, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=20.78 E-value=19 Score=24.68 Aligned_cols=35 Identities=20% Similarity=0.365 Sum_probs=26.7
Q ss_pred CCceEEEEEeccccccchhHHhhhcccCcEEEEEEECC
Q 023055 119 KPKYLLTITVGLNQKKNIDRMVKKFSEDFQIMLFHYDG 156 (288)
Q Consensus 119 ~~k~Lla~~VG~kqk~~Vd~~v~KFs~nF~vmLFHYDG 156 (288)
+.|.+||++=|.++.-...-+.+. +|++..+|.|.
T Consensus 1 K~KIvvalSGGvDS~vl~~lL~~~---~~~v~a~~~~~ 35 (168)
T d1vl2a1 1 KEKVVLAYSGGLDTSVILKWLCEK---GFDVIAYVANV 35 (168)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHT---TCEEEEEEEES
T ss_pred CCEEEEEeccHHHHHHHHHHHHHc---CCeEEEEEccc
Confidence 468999999999888777655443 77888888755
No 2
>d1vyua1 b.34.2.1 (A:39-174) SH3-like domain of the L-type calcium channel {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=19.57 E-value=13 Score=28.59 Aligned_cols=42 Identities=17% Similarity=0.434 Sum_probs=28.9
Q ss_pred CcEE-EEEEECCCCCccc-----ccccc-CcceEEEEeccccceeeccc
Q 023055 146 DFQI-MLFHYDGQTSQWD-----EFEWS-KSAIHVSIRRQTKWWYAKRF 187 (288)
Q Consensus 146 nF~v-mLFHYDG~vd~W~-----d~eWs-~~aIHVsa~kQtKWwfaKRF 187 (288)
.|.| -||.|||..|+-- .|... .+.|||.-..-..||.++..
T Consensus 23 ~~~vra~~~Y~~~~d~~~P~~~~~LsF~~gdil~v~~~~d~~WW~~r~~ 71 (136)
T d1vyua1 23 AFAVRTNVSYCGVLDEECPVQGSGVNFEAKDFLHIKEKYSNDWWIGRLV 71 (136)
T ss_dssp CEEEEESSCEEGGGCTTCSSTTCBCEECTTCEEEEEEECSSSEEEEEES
T ss_pred eEEEEEeeccCCCCCCCCcccCcccCCCCCCEEEEEeccCCCcEEEEec
Confidence 4544 7899999988751 13332 44688887777789999654
No 3
>d1omza_ c.68.1.15 (A:) Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-GalNAcT EXTL2) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=18.94 E-value=17 Score=25.90 Aligned_cols=99 Identities=11% Similarity=0.098 Sum_probs=46.9
Q ss_pred EEEEeccccccchhHHhhhcc--cCcEEEEEEECCCCCccccc---cccCcceEEEEeccccceeeccccCcchhccceE
Q 023055 124 LTITVGLNQKKNIDRMVKKFS--EDFQIMLFHYDGQTSQWDEF---EWSKSAIHVSIRRQTKWWYAKRFLHPDVVAAYEY 198 (288)
Q Consensus 124 la~~VG~kqk~~Vd~~v~KFs--~nF~vmLFHYDG~vd~W~d~---eWs~~aIHVsa~kQtKWwfaKRFLHPDiVa~YdY 198 (288)
+.+++ ++..+.+..+++-.. +--+..+..-|+..|+=.+. ++.++.+.+-..++.+--.+.|+. .=-.+.-||
T Consensus 7 vii~t-yn~~~~l~~~l~sl~~q~~~~~~iiV~d~~sd~~~~~i~~~~~~~~~~~~~~~~~~g~~~a~n~-~~~~a~ge~ 84 (265)
T d1omza_ 7 LIMQT-YNRTDLLLRLLNHYQAVPSLHKVIVVWNNVGEKGPEELWNSLGPHPIPVIFKPQTANKMRNRLQ-VFPEVETNA 84 (265)
T ss_dssp EEEEE-SSCHHHHHHHHHHHTTSTTEEEEEEEECCTTCCCTHHHHHHTCCCSSCEEEEECSSCCGGGGGS-CCTTCCSSE
T ss_pred EEEEc-CCCHHHHHHHHHHHHcCCCcCeEEEEECCCCCccHHHHHHHhcccceEEEEecCCCCchhhhhh-hHHhCCcCE
Confidence 33433 555566666665553 22223455566544442221 122222222222333332333332 222346799
Q ss_pred EEeeccccccCCCChHHHHHHHHHhC
Q 023055 199 IFIWDEDLGVEHFNGDKYMELVKKHG 224 (288)
Q Consensus 199 IFlWDEDLgVd~F~~~rYl~Ivk~~g 224 (288)
|.+.|+|.-++.-..++.++.+.++.
T Consensus 85 i~~lD~D~~~~~~~l~~l~~~~~~~~ 110 (265)
T d1omza_ 85 VLMVDDDTLISAQDLVFAFSIWQQFP 110 (265)
T ss_dssp EEEECTTEEECHHHHHHHHHHHTTST
T ss_pred EEEeCcccCCCHHHHHHHHHHHHhCC
Confidence 99999997765444444444444443
No 4
>d2qeda1 d.157.1.2 (A:1-251) Glyoxalase II (hydroxyacylglutathione hydrolase) {Salmonella typhimurium [TaxId: 90371]}
Probab=18.53 E-value=40 Score=27.36 Aligned_cols=35 Identities=9% Similarity=0.176 Sum_probs=26.6
Q ss_pred hccceEEEeeccc---cccCCCChHHHHHHHHHhCCccc
Q 023055 193 VAAYEYIFIWDED---LGVEHFNGDKYMELVKKHGLDIS 228 (288)
Q Consensus 193 Va~YdYIFlWDED---LgVd~F~~~rYl~Ivk~~gLEIS 228 (288)
-+.|-|++ +|++ +-||--+++++++.++++|+.|.
T Consensus 10 ~DNy~YLi-~~~~~~avvIDPg~~~~il~~i~~~~~~l~ 47 (251)
T d2qeda1 10 QDNYIWVL-TNDEGRCVIVDPGEAAPVLKAIAEHKWMPE 47 (251)
T ss_dssp TTEEEEEE-ECTTSEEEEECCSCHHHHHHHHHHHTCEEE
T ss_pred cCeEEEEE-EeCCCeEEEEcCCccHHHHHHHHHcCCcee
Confidence 44566654 5544 67888899999999999999874
No 5
>d1foba_ c.1.8.3 (A:) Beta-1,4-galactanase {Fungus (Aspergillus aculeatus) [TaxId: 5053]}
Probab=16.95 E-value=27 Score=29.59 Aligned_cols=41 Identities=20% Similarity=0.417 Sum_probs=30.1
Q ss_pred ccccccccCCCCcCcCCCCceEEEEEeccccccchhHHhhhcc-cCcEEEE-EEECC
Q 023055 102 DFFLRRLWGEPSEDLKKKPKYLLTITVGLNQKKNIDRMVKKFS-EDFQIML-FHYDG 156 (288)
Q Consensus 102 dl~~r~Lwg~p~~~~~~~~k~Lla~~VG~kqk~~Vd~~v~KFs-~nF~vmL-FHYDG 156 (288)
|.-.-|+|-+|.. |....+.|++++++.. ..+.||| |||++
T Consensus 42 n~VRlrvW~~p~~--------------g~~~~~~~~~~~~~a~~~Gm~vll~~hysd 84 (334)
T d1foba_ 42 NSIRQRVWVNPSD--------------GSYDLDYNLELAKRVKAAGMSLYLDLHLSD 84 (334)
T ss_dssp CEEEEEECSCCTT--------------CTTCHHHHHHHHHHHHHTTCEEEEEECCSS
T ss_pred CEEEeeeeeCCCC--------------CcCcHHHHHHHHHHHHHCCCEEEEEecCCC
Confidence 4444468977654 5667889999999996 5777766 89965
No 6
>d1qg8a_ c.68.1.1 (A:) Spore coat polysaccharide biosynthesis protein SpsA {Bacillus subtilis [TaxId: 1423]}
Probab=15.92 E-value=37 Score=25.65 Aligned_cols=101 Identities=13% Similarity=0.086 Sum_probs=48.9
Q ss_pred ceEEEEEeccccccchhHHhhhc---c-cCcEEEEEEECCCCCccccc--ccc-CcceEEEEeccccceeeccccCc---
Q 023055 121 KYLLTITVGLNQKKNIDRMVKKF---S-EDFQIMLFHYDGQTSQWDEF--EWS-KSAIHVSIRRQTKWWYAKRFLHP--- 190 (288)
Q Consensus 121 k~Lla~~VG~kqk~~Vd~~v~KF---s-~nF~vmLFHYDG~vd~W~d~--eWs-~~aIHVsa~kQtKWwfaKRFLHP--- 190 (288)
+.-+.+++ ++....+.+.++-. . ++|.| +++.||..|+=.+. ++. +.-|.+-..++.++....+-+..
T Consensus 2 ~vSiiip~-yN~~~~l~~~l~Si~~Qt~~~~ei-ivvdd~S~d~t~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~a 79 (255)
T d1qg8a_ 2 KVSVIMTS-YNKSDYVAKSISSILSQTFSDFEL-FIMDDNSNEETLNVIRPFLNDNRVRFYQSDISGVKERTEKTRYAAL 79 (255)
T ss_dssp CEEEEEEE-SSCTTTHHHHHHHHHTCSCCCEEE-EEEECSCCHHHHHHHGGGGGSTTEEEEECCCCSHHHHHSSCHHHHH
T ss_pred EEEEEEec-CCCHHHHHHHHHHHHhCCCCCeEE-EEEECCCCccHHHHHHHhhhhcccccccccccccccccccchhccc
Confidence 33344443 23333455555443 1 57885 66778987763321 121 22255544333333222221111
Q ss_pred ---ch-hccceEEEeeccccccCCCChHHHHHHHHHh
Q 023055 191 ---DV-VAAYEYIFIWDEDLGVEHFNGDKYMELVKKH 223 (288)
Q Consensus 191 ---Di-Va~YdYIFlWDEDLgVd~F~~~rYl~Ivk~~ 223 (288)
-+ .+..|||+++|.|--.+.--.++.++.++++
T Consensus 80 ~N~gi~~a~g~~i~~lD~Dd~~~p~~l~~~~~~~~~~ 116 (255)
T d1qg8a_ 80 INQAIEMAEGEYITYATDDNIYMPDRLLKMVRELDTH 116 (255)
T ss_dssp HHHHHHHCCCSEEEEEETTEEECTTHHHHHHHHHHHC
T ss_pred ccccccccccccccccccccccccchHHHHHHHHHhC
Confidence 01 3478999999988555432244444444443
No 7
>d1xhba2 c.68.1.17 (A:95-422) Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=15.61 E-value=36 Score=27.04 Aligned_cols=41 Identities=12% Similarity=0.054 Sum_probs=34.5
Q ss_pred hccceEEEeeccccccCCCChHHHHHHHHHhCCcccCCCcc
Q 023055 193 VAAYEYIFIWDEDLGVEHFNGDKYMELVKKHGLDISQPGLE 233 (288)
Q Consensus 193 Va~YdYIFlWDEDLgVd~F~~~rYl~Ivk~~gLEISQPALd 233 (288)
.+.-|||++.|.|..++.--.++.++.+.+..-.+..|.++
T Consensus 105 ~a~gd~i~flD~D~~~~p~~l~~l~~~~~~~~~~~v~~~~~ 145 (328)
T d1xhba2 105 VSRGQVITFLDAHCECTAGWLEPLLARIKHDRRTVVCPIID 145 (328)
T ss_dssp HCCSSEEEEEESSEEECTTCHHHHHHHHHHCTTEEEEEEEE
T ss_pred hhhcceeeecCcccccChhHHHHHHHHHhcCCCeEEeccee
Confidence 46789999999999998888899999888888777777654
No 8
>d2q78a1 d.38.1.7 (A:1-130) Uncharacterized protein TM0581 {Thermotoga maritima [TaxId: 2336]}
Probab=15.00 E-value=19 Score=27.55 Aligned_cols=37 Identities=14% Similarity=0.393 Sum_probs=32.3
Q ss_pred EeeccccccCCCC---hHHHHHHHHHhCCcccCCCccCCC
Q 023055 200 FIWDEDLGVEHFN---GDKYMELVKKHGLDISQPGLEPNN 236 (288)
Q Consensus 200 FlWDEDLgVd~F~---~~rYl~Ivk~~gLEISQPALd~~s 236 (288)
.+||||.++-+++ .-.++.+|..-..++-||-|+++.
T Consensus 22 ~~~~ed~~~~dl~VlaTp~lia~mE~a~~~~l~~~L~~g~ 61 (130)
T d2q78a1 22 MVWNEDIEMLDLHLVATSALIGVVHRVSYELLSRYLPNDY 61 (130)
T ss_dssp GBCCSCGGGGGGCBBCHHHHHHHHHHHHHHHHHTTSCTTE
T ss_pred ccccCCCccccceEEchHHHHHHHHHHHHHHHHhhCCCCc
Confidence 4799999887755 588999999999999999999984
No 9
>d1dkca_ g.3.4.2 (A:) Antifungal peptide PAFP-S {Pokeweed (Phytolacca americana) [TaxId: 3527]}
Probab=14.85 E-value=22 Score=22.49 Aligned_cols=18 Identities=33% Similarity=0.924 Sum_probs=12.6
Q ss_pred cCCCCCCCCCCCC--cccee
Q 023055 257 EKPGWCSDPHLPP--CAAYA 274 (288)
Q Consensus 257 ~~~g~C~~~~~pP--CtgfV 274 (288)
++.|+|..+-+|| |++|-
T Consensus 5 ~nggrcn~~~gppyccs~~c 24 (38)
T d1dkca_ 5 KNGGRCNASAGPPYCCSSYC 24 (38)
T ss_dssp SSSEEECTTSCCCCCSSSEE
T ss_pred cCCceecccCCCCceechhh
Confidence 3456898888888 56663
No 10
>d1s4na_ c.68.1.16 (A:) Glycolipid 2-alpha-mannosyltransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=14.13 E-value=37 Score=29.88 Aligned_cols=34 Identities=12% Similarity=0.324 Sum_probs=25.1
Q ss_pred cCcchhccceEEEeeccccccC---CCChHHHHHHHHHhCC
Q 023055 188 LHPDVVAAYEYIFIWDEDLGVE---HFNGDKYMELVKKHGL 225 (288)
Q Consensus 188 LHPDiVa~YdYIFlWDEDLgVd---~F~~~rYl~Ivk~~gL 225 (288)
-|| ++++|||++=.|+|+.+. ++||-+ .|++++.
T Consensus 130 ~~p-~L~~YdYywRvdpD~~f~cdI~yD~F~---~M~~n~k 166 (339)
T d1s4na_ 130 RHE-LLEEYDWYWRVEPDIKLYCDINYDVFK---WMQENEK 166 (339)
T ss_dssp GSG-GGTTCSEEEECCTTCEECSCCCSCHHH---HHHHTTC
T ss_pred cch-hhhccceEEEeCCCcEEecCCCCCHHH---HHhhcCC
Confidence 466 789999999999999875 366655 4555543
Done!