BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023056
(288 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1H8A|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex3
Length = 128
Score = 110 bits (275), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 51/104 (49%), Positives = 75/104 (72%), Gaps = 1/104 (0%)
Query: 13 NKGAWTKEEDQRLIDYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTD 72
NKG WTKEEDQR+I++++ +G W + K R GK CR RW N+L P++K+ ++T+
Sbjct: 26 NKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWTE 84
Query: 73 EEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKL 116
EED +I + H LGN+W+ IA LPGRTDN +KN+WN+ ++RK+
Sbjct: 85 EEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRKV 128
>pdb|1A5J|A Chain A, Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3,
Nmr, 32 Structures
Length = 110
Score = 109 bits (273), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 51/103 (49%), Positives = 74/103 (71%), Gaps = 1/103 (0%)
Query: 14 KGAWTKEEDQRLIDYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTDE 73
KG WTKEEDQ++I+ ++ +G W + K R GK CR RW N+L P++K+ ++T+E
Sbjct: 7 KGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKG-RLGKQCRERWHNHLNPEVKKSSWTEE 65
Query: 74 EDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKL 116
ED +I + H +LGN+W+ IA LPGRTDN +KN+WN+ IKRK+
Sbjct: 66 EDRIIFEAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRKV 108
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 63 PDLKRGNFTDEEDELIIKLHSLLGNK-WSLIAGRLPGRTDNEIKNYWNTHIKRKLLNRGL 121
PDL +G +T EED+ +I+L G K W+LIA L GR + + W+ H+ ++
Sbjct: 3 PDLVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHNHLNPEVKKSSW 62
Query: 122 DPQTHRPLNQIH 133
+ R + + H
Sbjct: 63 TEEEDRIIFEAH 74
>pdb|1MSE|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition Helices
pdb|1MSF|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition Helices
Length = 105
Score = 105 bits (263), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 51/103 (49%), Positives = 72/103 (69%), Gaps = 1/103 (0%)
Query: 14 KGAWTKEEDQRLIDYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTDE 73
KG WTKEEDQR+I ++ +G W + K R GK CR RW N+L P++K+ ++T+E
Sbjct: 4 KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWTEE 62
Query: 74 EDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKL 116
ED +I + H LGN+W+ IA LPGRTDN IKN+WN+ ++RK+
Sbjct: 63 EDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 65 LKRGNFTDEEDELIIKLHSLLGNK-WSLIAGRLPGRTDNEIKNYWNTHIKRKLLNRGLDP 123
L +G +T EED+ +IKL G K WS+IA L GR + + W+ H+ ++
Sbjct: 2 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTE 61
Query: 124 QTHRPLNQIH 133
+ R + Q H
Sbjct: 62 EEDRIIYQAH 71
>pdb|1GV2|A Chain A, Crystal Structure Of C-Myb R2r3
Length = 105
Score = 105 bits (263), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 51/103 (49%), Positives = 72/103 (69%), Gaps = 1/103 (0%)
Query: 14 KGAWTKEEDQRLIDYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTDE 73
KG WTKEEDQR+I ++ +G W + K R GK CR RW N+L P++K+ ++T+E
Sbjct: 4 KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWTEE 62
Query: 74 EDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKL 116
ED +I + H LGN+W+ IA LPGRTDN IKN+WN+ ++RK+
Sbjct: 63 EDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 64 DLKRGNFTDEEDELIIKLHSLLGNK-WSLIAGRLPGRTDNEIKNYWNTHIKRKLLNRGLD 122
+L +G +T EED+ +IKL G K WS+IA L GR + + W+ H+ ++
Sbjct: 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWT 60
Query: 123 PQTHRPLNQIH 133
+ R + Q H
Sbjct: 61 EEEDRIIYQAH 71
>pdb|1H88|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex1
pdb|1H89|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex2
Length = 159
Score = 105 bits (263), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 51/103 (49%), Positives = 72/103 (69%), Gaps = 1/103 (0%)
Query: 14 KGAWTKEEDQRLIDYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTDE 73
KG WTKEEDQR+I ++ +G W + K R GK CR RW N+L P++K+ ++T+E
Sbjct: 58 KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWTEE 116
Query: 74 EDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKL 116
ED +I + H LGN+W+ IA LPGRTDN IKN+WN+ ++RK+
Sbjct: 117 EDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 159
>pdb|3ZQC|A Chain A, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|D Chain D, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|G Chain G, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|J Chain J, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
Length = 131
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 65/105 (61%), Gaps = 5/105 (4%)
Query: 14 KGAWTKEEDQRLIDYIRAHGEGCWRSLPKAAGLL--RCGKSCRLRWINYLRPDLKRGNFT 71
KG +T+ ED + +Y++ +G W P+ L R K CR RW N+L P + + +T
Sbjct: 2 KGPFTEAEDDLIREYVKENGPQNW---PRITSFLPNRSPKQCRERWFNHLDPAVVKHAWT 58
Query: 72 DEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKL 116
EEDE I + + LG+KWS+IA +PGRTDN IKN WN+ I +++
Sbjct: 59 PEEDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKRI 103
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 67 RGNFTDEEDELIIKLHSLLGNK-WSLIAGRLPGRTDNEIKNYWNTHIKRKLLNRGLDPQ 124
+G FT+ ED+LI + G + W I LP R+ + + W H+ ++ P+
Sbjct: 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPE 60
>pdb|3OSF|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-2f-13 Dna
pdb|3OSF|D Chain D, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-2f-13 Dna
pdb|3OSG|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-1-12 Dna
pdb|3OSG|D Chain D, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-1-12 Dna
Length = 126
Score = 68.2 bits (165), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 46/118 (38%), Positives = 62/118 (52%), Gaps = 7/118 (5%)
Query: 12 TNKGAWTKEEDQRLIDYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFT 71
K +T EED+ L + HG W+ + A R + CR RW NYL P + +T
Sbjct: 9 AKKQKFTPEEDEMLKRAVAQHGSD-WKMI-AATFPNRNARQCRDRWKNYLAPSISHTPWT 66
Query: 72 DEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKLLNRGLDPQTHRPL 129
EED L+++ G +W++IA PGRTD IKN W T I KL G+ PQT + L
Sbjct: 67 AEEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVT-ISNKL---GI-PQTQQML 119
>pdb|1MBJ|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3
pdb|1MBK|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3
Length = 53
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 41/52 (78%)
Query: 65 LKRGNFTDEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKL 116
+K+ ++T+EED +I + H LGN+W+ IA LPGRTDN IKN+WN+ ++RK+
Sbjct: 1 VKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 52
>pdb|1IDY|A Chain A, Structure Of Myb Transforming Protein, Nmr, Minimized
Average Structure
pdb|1IDZ|A Chain A, Structure Of Myb Transforming Protein, Nmr, 20 Structures
Length = 54
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 42/53 (79%)
Query: 64 DLKRGNFTDEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKL 116
++K+ ++T+EED ++ + H LGN+W+ IA LPGRTDN IKN+WN+ ++RK+
Sbjct: 2 EVKKTSWTEEEDRILYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 54
>pdb|2K9N|A Chain A, Solution Nmr Structure Of The R2r3 Dna Binding Domain Of
Myb1 Protein From Protozoan Parasite Trichomonas
Vaginalis
pdb|2KDZ|A Chain A, Structure Of The R2r3 Dna Binding Domain Of Myb1 Protein
From Protozoan Parasite Trichomonas Vaginalis In Complex
With Mre-1MRE-2r Dna
Length = 107
Score = 57.4 bits (137), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 53/95 (55%), Gaps = 1/95 (1%)
Query: 14 KGAWTKEEDQRLIDYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTDE 73
K +T+EED +L + +G W + + + R + CR RW NY+ P L+ ++ E
Sbjct: 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLM-ITRNPRQCRERWNNYINPALRTDPWSPE 59
Query: 74 EDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYW 108
ED L+ + ++ G KW+ I+ L R+DN I+N W
Sbjct: 60 EDMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRW 94
>pdb|1GVD|A Chain A, Crystal Structure Of C-Myb R2 V103l Mutant
Length = 52
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 14 KGAWTKEEDQRLIDYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPD 64
KG WTKEEDQRLI ++ +G W + K R GK CR RW N+L P+
Sbjct: 3 KGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE 52
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 65 LKRGNFTDEEDELIIKLHSLLGNK-WSLIAGRLPGRTDNEIKNYWNTHI 112
L +G +T EED+ +IKL G K WS+IA L GR + + W+ H+
Sbjct: 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 49
>pdb|1MBG|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2
pdb|1MBH|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2
Length = 53
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 14 KGAWTKEEDQRLIDYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPD 64
KG WTKEEDQR+I+ ++ +G W + K R GK CR RW N+L P+
Sbjct: 3 KGPWTKEEDQRVIELVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE 52
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 65 LKRGNFTDEEDELIIKLHSLLGNK-WSLIAGRLPGRTDNEIKNYWNTHI 112
L +G +T EED+ +I+L G K WS+IA L GR + + W+ H+
Sbjct: 1 LIKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 49
>pdb|1GV5|A Chain A, Crystal Structure Of C-Myb R2
Length = 52
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 14 KGAWTKEEDQRLIDYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPD 64
KG WTKEEDQR+I ++ +G W + K R GK CR RW N+L P+
Sbjct: 3 KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE 52
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 65 LKRGNFTDEEDELIIKLHSLLGNK-WSLIAGRLPGRTDNEIKNYWNTHI 112
L +G +T EED+ +IKL G K WS+IA L GR + + W+ H+
Sbjct: 1 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 49
>pdb|1MBE|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1
pdb|1MBF|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1
Length = 53
Score = 30.8 bits (68), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 65 LKRGNFTDEEDELIIKLHSLLG-NKWSLIAGRLPGRTDNEIKNYW 108
L + +T EEDE + KL G + W +IA LP RTD + ++ W
Sbjct: 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRW 45
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Query: 14 KGAWTKEEDQRLIDYIRAHGEGCWRSLPKAAGLL--RCGKSCRLRWINYLRPD 64
K WT+EED++L + +G W+ + A L R C+ RW L P+
Sbjct: 3 KTRWTREEDEKLKKLVEQNGTDDWKVI---ANYLPNRTDVQCQHRWQKVLNPE 52
>pdb|1GUU|A Chain A, Crystal Structure Of C-Myb R1
Length = 52
Score = 30.8 bits (68), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 65 LKRGNFTDEEDELIIKLHSLLG-NKWSLIAGRLPGRTDNEIKNYW 108
L + +T EEDE + KL G + W +IA LP RTD + ++ W
Sbjct: 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRW 45
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Query: 14 KGAWTKEEDQRLIDYIRAHGEGCWRSLPKAAGLL--RCGKSCRLRWINYLRPD 64
K WT+EED++L + +G W+ + A L R C+ RW L P+
Sbjct: 3 KTRWTREEDEKLKKLVEQNGTDDWKVI---ANYLPNRTDVQCQHRWQKVLNPE 52
>pdb|2DIM|A Chain A, Solution Structure Of The Myb_dna-Binding Domain Of
Human Cell Division Cycle 5-Like Protein
Length = 70
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
Query: 16 AWTKEEDQRLIDYIRAHGEGCWRSLPKAAGLL--RCGKSCRLRWINYLRPDLKRGNFT 71
W ED+ L + +G+ W + A LL + K C+ RW +L P +K+ ++
Sbjct: 11 VWRNTEDEILKAAVMKYGKNQWSRI---ASLLHRKSAKQCKARWYEWLDPSIKKTEWS 65
>pdb|1IGN|A Chain A, Dna-Binding Domain Of Rap1 In Complex With Telomeric Dna
Site
pdb|1IGN|B Chain B, Dna-Binding Domain Of Rap1 In Complex With Telomeric Dna
Site
Length = 246
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 14/64 (21%)
Query: 63 PDLKRGNFTDEEDELIIKL----------HSLLGNKWSLIAGRLPGRTDNEIKNYWNTHI 112
P + +FTDEEDE I+ + H+L + I+ +P T N I++ + ++
Sbjct: 4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTL----YDEISHYVPNHTGNSIRHRFRVYL 59
Query: 113 KRKL 116
++L
Sbjct: 60 SKRL 63
>pdb|2D9A|A Chain A, Solution Structure Of Rsgi Ruh-050, A Myb Dna-Binding
Domain In Mouse Cdna
Length = 60
Score = 29.3 bits (64), Expect = 2.4, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 12 TNKGAWTKEEDQRLIDYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61
+ K WT EED++L +R G+ W+ L R + C+ RW+ L
Sbjct: 6 SGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFP-NRTDQQCQYRWLRVL 54
Score = 27.7 bits (60), Expect = 6.8, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 70 FTDEEDELIIKLHSLLGNK-WSLIAGRLPGRTDNEIKNYW 108
+T EEDE + L G + W +A P RTD + + W
Sbjct: 11 WTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRW 50
>pdb|2K56|A Chain A, Bank Vole Prion Protein (121-231)
Length = 113
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 26/56 (46%)
Query: 83 SLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKLLNRGLDPQTHRPLNQIHNHNNF 138
S++G + G R N W R+ +NR + +RP++Q +N NNF
Sbjct: 2 SVVGGLGGYMLGSAMSRPMIHFGNDWEDRYYRENMNRYPNQVYYRPVDQYNNQNNF 57
>pdb|2XB0|X Chain X, Dna-Binding Domain From Saccharomyces Cerevisiae
Chromatin- Remodelling Protein Chd1
Length = 270
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 17 WTKEEDQRLIDYIRAHGEGCWRSL 40
WTKEED++L+ + +G G W +
Sbjct: 171 WTKEEDEKLLIGVFKYGYGSWTQI 194
>pdb|3TED|A Chain A, Crystal Structure Of The Chd1 Dna-Binding Domain In
Complex With A Dna Duplex
Length = 271
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 17 WTKEEDQRLIDYIRAHGEGCWRSL 40
WTKEED++L+ + +G G W +
Sbjct: 172 WTKEEDEKLLIGVFKYGYGSWTQI 195
>pdb|3UKG|A Chain A, Crystal Structure Of Rap1DNA COMPLEX
Length = 242
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 14/60 (23%)
Query: 67 RGNFTDEEDELIIKL----------HSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKL 116
+ +FTDEEDE I+ + H+L + I+ +P T N I++ + ++ ++L
Sbjct: 1 KASFTDEEDEFILDVVRKNPTRRTTHTL----YDEISHYVPNHTGNSIRHRFRVYLSKRL 56
>pdb|2CU7|A Chain A, Solution Structure Of The Sant Domain Of Human Kiaa1915
Protein
Length = 72
Score = 28.1 bits (61), Expect = 5.5, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 70 FTDEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKLLNRGLDPQT 125
+T EE EL + + G +W+ I+ + RT ++K+Y + K K + GLD +T
Sbjct: 12 WTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNK-VKCGLDKET 66
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,438,947
Number of Sequences: 62578
Number of extensions: 324423
Number of successful extensions: 909
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 841
Number of HSP's gapped (non-prelim): 54
length of query: 288
length of database: 14,973,337
effective HSP length: 98
effective length of query: 190
effective length of database: 8,840,693
effective search space: 1679731670
effective search space used: 1679731670
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)