Query 023056
Match_columns 288
No_of_seqs 318 out of 1528
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 15:36:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023056.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023056hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1h89_C C-MYB, MYB proto-oncoge 100.0 2.7E-35 9.3E-40 250.3 4.6 139 12-153 4-143 (159)
2 3zqc_A MYB3; transcription-DNA 100.0 1.5E-33 5.3E-38 232.6 12.5 111 14-125 2-112 (131)
3 1gv2_A C-MYB, MYB proto-oncoge 100.0 1.3E-33 4.5E-38 224.2 11.0 105 11-116 1-105 (105)
4 2k9n_A MYB24; R2R3 domain, DNA 100.0 2.2E-33 7.4E-38 224.1 9.7 104 14-118 1-104 (107)
5 1h8a_C AMV V-MYB, MYB transfor 100.0 8.7E-33 3E-37 227.0 10.2 108 8-116 21-128 (128)
6 3osg_A MYB21; transcription-DN 100.0 1.5E-32 5.1E-37 225.3 11.1 106 8-115 5-110 (126)
7 1h89_C C-MYB, MYB proto-oncoge 100.0 2.6E-30 8.9E-35 219.6 10.0 108 8-116 52-159 (159)
8 1h8a_C AMV V-MYB, MYB transfor 99.9 1.4E-26 4.6E-31 190.1 3.5 111 40-153 1-112 (128)
9 2dim_A Cell division cycle 5-l 99.8 4.8E-22 1.6E-26 146.8 4.2 67 8-75 3-69 (70)
10 2dim_A Cell division cycle 5-l 99.8 3E-19 1E-23 131.7 6.1 65 62-126 4-69 (70)
11 1gv2_A C-MYB, MYB proto-oncoge 99.7 7.9E-19 2.7E-23 138.8 3.9 87 64-152 1-88 (105)
12 3osg_A MYB21; transcription-DN 99.7 9.6E-19 3.3E-23 143.0 4.1 83 62-144 6-88 (126)
13 1ign_A Protein (RAP1); RAP1,ye 99.7 3.2E-18 1.1E-22 152.5 7.7 106 9-115 3-200 (246)
14 2juh_A Telomere binding protei 99.7 4.4E-18 1.5E-22 138.0 5.3 83 8-91 11-103 (121)
15 2llk_A Cyclin-D-binding MYB-li 99.7 4.8E-18 1.6E-22 126.4 4.6 58 54-112 10-67 (73)
16 3zqc_A MYB3; transcription-DNA 99.7 6.3E-18 2.2E-22 139.0 5.0 86 67-154 2-88 (131)
17 2k9n_A MYB24; R2R3 domain, DNA 99.7 3E-18 1E-22 136.3 2.6 78 67-145 1-79 (107)
18 2d9a_A B-MYB, MYB-related prot 99.7 1.2E-17 4E-22 119.5 4.8 57 9-66 3-59 (60)
19 2cu7_A KIAA1915 protein; nucle 99.7 3E-17 1E-21 121.7 6.7 66 61-127 3-68 (72)
20 2din_A Cell division cycle 5-l 99.7 2.8E-17 9.7E-22 119.7 6.3 60 60-120 2-61 (66)
21 2roh_A RTBP1, telomere binding 99.7 3.8E-17 1.3E-21 132.6 7.1 79 9-88 26-114 (122)
22 1gvd_A MYB proto-oncogene prot 99.7 2E-17 6.7E-22 115.0 4.5 52 12-64 1-52 (52)
23 1guu_A C-MYB, MYB proto-oncoge 99.7 3E-17 1E-21 114.0 3.9 52 12-64 1-52 (52)
24 1ity_A TRF1; helix-turn-helix, 99.7 4.3E-17 1.5E-21 119.8 4.7 62 9-71 5-68 (69)
25 2d9a_A B-MYB, MYB-related prot 99.7 5.2E-17 1.8E-21 116.1 5.0 56 62-117 3-59 (60)
26 1ity_A TRF1; helix-turn-helix, 99.6 2.7E-16 9.2E-21 115.6 6.7 62 61-122 4-68 (69)
27 1guu_A C-MYB, MYB proto-oncoge 99.6 2.1E-16 7.2E-21 109.7 5.7 50 65-114 1-51 (52)
28 1gvd_A MYB proto-oncogene prot 99.6 3.3E-16 1.1E-20 108.8 5.9 50 65-114 1-51 (52)
29 1x41_A Transcriptional adaptor 99.6 4.8E-16 1.7E-20 111.2 4.7 54 10-64 4-57 (60)
30 3sjm_A Telomeric repeat-bindin 99.6 3.3E-16 1.1E-20 113.7 3.7 55 11-66 8-64 (64)
31 1w0t_A Telomeric repeat bindin 99.6 1.4E-15 4.6E-20 106.2 5.6 49 66-114 1-52 (53)
32 1x41_A Transcriptional adaptor 99.6 1.4E-15 4.7E-20 108.9 5.2 53 62-114 3-56 (60)
33 3sjm_A Telomeric repeat-bindin 99.6 2E-15 6.7E-20 109.6 5.5 52 65-116 9-63 (64)
34 1w0t_A Telomeric repeat bindin 99.6 1.5E-15 5E-20 106.0 3.7 49 13-62 1-51 (53)
35 2yum_A ZZZ3 protein, zinc fing 99.6 1.1E-15 3.8E-20 113.9 3.1 62 8-70 2-68 (75)
36 2yum_A ZZZ3 protein, zinc fing 99.5 3.7E-15 1.3E-19 111.1 5.3 60 62-121 3-68 (75)
37 2din_A Cell division cycle 5-l 99.5 7.9E-16 2.7E-20 112.0 1.1 58 8-68 3-60 (66)
38 2elk_A SPCC24B10.08C protein; 99.5 3.8E-15 1.3E-19 105.9 4.2 50 11-61 6-56 (58)
39 2elk_A SPCC24B10.08C protein; 99.5 1.2E-14 4.1E-19 103.3 5.6 50 63-112 5-56 (58)
40 2cu7_A KIAA1915 protein; nucle 99.5 8.3E-15 2.8E-19 108.5 3.1 58 8-67 3-60 (72)
41 2ltp_A Nuclear receptor corepr 99.2 4E-15 1.4E-19 114.7 0.0 56 60-115 9-64 (89)
42 2juh_A Telomere binding protei 99.5 2.2E-14 7.4E-19 116.3 3.3 81 61-141 11-102 (121)
43 2roh_A RTBP1, telomere binding 99.4 4.7E-14 1.6E-18 114.5 3.9 77 63-139 27-114 (122)
44 2aje_A Telomere repeat-binding 99.4 1.3E-13 4.4E-18 109.2 6.2 78 8-86 7-94 (105)
45 2llk_A Cyclin-D-binding MYB-li 99.4 1.3E-13 4.4E-18 102.5 4.8 57 7-67 16-72 (73)
46 2ckx_A NGTRF1, telomere bindin 99.4 2.3E-13 7.8E-18 103.5 5.8 69 15-84 1-79 (83)
47 1ign_A Protein (RAP1); RAP1,ye 99.4 2.5E-13 8.6E-18 121.0 5.3 71 63-134 4-80 (246)
48 2cqr_A RSGI RUH-043, DNAJ homo 99.4 6.4E-13 2.2E-17 98.7 5.7 51 63-113 14-68 (73)
49 2yus_A SWI/SNF-related matrix- 99.3 6.5E-13 2.2E-17 100.1 5.2 52 7-60 11-62 (79)
50 2yus_A SWI/SNF-related matrix- 99.3 7.5E-13 2.6E-17 99.8 4.0 48 64-111 15-62 (79)
51 2aje_A Telomere repeat-binding 99.3 3.2E-12 1.1E-16 101.2 7.2 51 63-113 9-64 (105)
52 2cqr_A RSGI RUH-043, DNAJ homo 99.3 5.9E-13 2E-17 98.9 2.8 55 7-62 11-68 (73)
53 2ckx_A NGTRF1, telomere bindin 99.3 3.2E-12 1.1E-16 97.2 6.0 48 68-115 1-53 (83)
54 1x58_A Hypothetical protein 49 99.3 6.4E-12 2.2E-16 89.9 6.3 50 65-114 6-58 (62)
55 2ltp_A Nuclear receptor corepr 98.9 4.5E-13 1.5E-17 103.2 0.0 55 7-63 9-63 (89)
56 2cjj_A Radialis; plant develop 99.1 5.9E-11 2E-15 92.0 5.8 50 66-115 7-60 (93)
57 3hm5_A DNA methyltransferase 1 99.0 4.3E-10 1.5E-14 86.9 6.3 66 51-120 18-88 (93)
58 2cjj_A Radialis; plant develop 99.0 1.6E-10 5.5E-15 89.6 2.5 48 13-61 7-57 (93)
59 2eqr_A N-COR1, N-COR, nuclear 99.0 7.5E-10 2.5E-14 79.2 5.4 48 66-113 11-58 (61)
60 1x58_A Hypothetical protein 49 98.8 1.9E-09 6.5E-14 77.0 3.5 49 12-62 6-57 (62)
61 2cqq_A RSGI RUH-037, DNAJ homo 98.8 6.6E-09 2.3E-13 76.8 5.2 50 64-114 5-58 (72)
62 2eqr_A N-COR1, N-COR, nuclear 98.8 5.8E-09 2E-13 74.5 4.6 53 7-61 5-57 (61)
63 2iw5_B Protein corest, REST co 98.6 1.8E-08 6.3E-13 89.0 4.6 49 66-114 132-180 (235)
64 2cqq_A RSGI RUH-037, DNAJ homo 98.5 3.9E-08 1.3E-12 72.6 3.1 51 11-63 5-58 (72)
65 1fex_A TRF2-interacting telome 98.5 5.8E-08 2E-12 69.0 2.3 48 14-62 2-58 (59)
66 2xag_B REST corepressor 1; ami 98.4 1E-07 3.5E-12 93.0 4.4 45 68-112 381-425 (482)
67 1wgx_A KIAA1903 protein; MYB D 98.4 2.4E-07 8.3E-12 68.4 5.2 46 67-112 8-57 (73)
68 1fex_A TRF2-interacting telome 98.4 2.4E-07 8.3E-12 65.7 4.7 47 67-113 2-58 (59)
69 1wgx_A KIAA1903 protein; MYB D 98.4 2E-07 6.9E-12 68.8 3.6 48 14-62 8-58 (73)
70 2iw5_B Protein corest, REST co 98.3 2.9E-07 9.9E-12 81.4 4.5 51 10-62 129-179 (235)
71 2yqk_A Arginine-glutamic acid 98.2 3.7E-06 1.2E-10 60.3 6.4 49 62-110 4-53 (63)
72 1ofc_X ISWI protein; nuclear p 98.2 4E-06 1.4E-10 77.6 8.1 99 15-114 111-275 (304)
73 4eef_G F-HB80.4, designed hema 97.9 2.7E-06 9.1E-11 62.6 1.8 43 67-109 20-66 (74)
74 4iej_A DNA methyltransferase 1 97.9 1.9E-05 6.5E-10 60.7 6.4 62 55-120 22-88 (93)
75 4eef_G F-HB80.4, designed hema 97.9 3.5E-06 1.2E-10 62.0 1.7 44 14-58 20-66 (74)
76 1ug2_A 2610100B20RIK gene prod 97.8 2.1E-05 7.1E-10 60.0 4.6 45 69-113 35-82 (95)
77 2yqk_A Arginine-glutamic acid 97.7 2.9E-05 1E-09 55.5 4.1 50 8-59 3-53 (63)
78 2lr8_A CAsp8-associated protei 96.9 4.9E-06 1.7E-10 60.1 0.0 44 69-113 16-62 (70)
79 2crg_A Metastasis associated p 97.7 6.7E-05 2.3E-09 54.8 5.8 44 67-110 8-52 (70)
80 4a69_C Nuclear receptor corepr 97.7 5.1E-05 1.8E-09 58.5 5.4 45 67-111 43-87 (94)
81 2xag_B REST corepressor 1; ami 97.6 4.5E-05 1.6E-09 74.4 4.4 49 11-61 377-425 (482)
82 3hm5_A DNA methyltransferase 1 97.4 9.2E-05 3.1E-09 57.0 3.3 48 13-61 29-80 (93)
83 4a69_C Nuclear receptor corepr 97.2 0.0002 7E-09 55.1 3.1 44 14-59 43-86 (94)
84 2crg_A Metastasis associated p 97.1 0.00027 9.2E-09 51.5 3.2 44 14-59 8-52 (70)
85 2ebi_A DNA binding protein GT- 97.1 0.00039 1.3E-08 52.3 4.1 49 67-115 4-66 (86)
86 2ebi_A DNA binding protein GT- 97.1 0.0001 3.5E-09 55.5 0.6 49 13-61 3-63 (86)
87 2y9y_A Imitation switch protei 97.0 0.0015 5E-08 61.9 7.9 99 15-114 124-291 (374)
88 4b4c_A Chromodomain-helicase-D 97.0 0.00069 2.4E-08 58.8 5.2 45 69-113 136-195 (211)
89 2lr8_A CAsp8-associated protei 95.4 0.00056 1.9E-08 49.4 0.0 45 15-61 15-61 (70)
90 1ug2_A 2610100B20RIK gene prod 96.3 0.0031 1.1E-07 48.0 3.9 46 15-61 34-81 (95)
91 4iej_A DNA methyltransferase 1 95.0 0.017 5.7E-07 44.3 3.4 49 12-61 28-80 (93)
92 4b4c_A Chromodomain-helicase-D 94.9 0.024 8.1E-07 49.0 4.5 39 4-42 124-162 (211)
93 1irz_A ARR10-B; helix-turn-hel 94.7 0.059 2E-06 38.4 5.5 48 65-112 5-57 (64)
94 1ofc_X ISWI protein; nuclear p 93.7 0.1 3.6E-06 48.0 6.4 43 67-109 110-153 (304)
95 2xb0_X Chromo domain-containin 90.8 0.21 7.1E-06 45.3 4.4 28 15-42 169-196 (270)
96 2xb0_X Chromo domain-containin 89.5 0.21 7.1E-06 45.3 3.2 27 69-95 170-197 (270)
97 1irz_A ARR10-B; helix-turn-hel 89.3 0.4 1.4E-05 34.1 4.0 50 11-60 4-56 (64)
98 3iot_A Maltose-binding protein 74.2 0.67 2.3E-05 43.5 0.1 15 16-30 126-140 (449)
99 3cz6_A DNA-binding protein RAP 64.4 4.3 0.00015 34.0 2.9 27 12-41 112-146 (168)
100 2rq5_A Protein jumonji; develo 59.7 3.7 0.00013 32.5 1.7 45 36-83 65-113 (121)
101 1u78_A TC3 transposase, transp 57.0 60 0.0021 24.4 9.1 86 15-107 5-99 (141)
102 2li6_A SWI/SNF chromatin-remod 56.7 4.1 0.00014 31.8 1.5 39 24-63 53-98 (116)
103 2y9y_A Imitation switch protei 55.7 20 0.00067 33.8 6.2 41 68-108 124-166 (374)
104 2o8x_A Probable RNA polymerase 50.6 16 0.00056 24.4 3.7 41 70-112 16-56 (70)
105 3cz6_A DNA-binding protein RAP 50.3 13 0.00043 31.1 3.5 17 63-79 110-126 (168)
106 2jrz_A Histone demethylase jar 47.5 6.7 0.00023 30.6 1.3 40 24-63 44-93 (117)
107 1ig6_A MRF-2, modulator recogn 47.2 8 0.00027 29.5 1.8 40 24-63 37-87 (107)
108 1ku3_A Sigma factor SIGA; heli 47.1 20 0.00068 24.6 3.8 40 73-113 13-56 (73)
109 2lm1_A Lysine-specific demethy 45.5 26 0.00089 26.5 4.5 38 77-114 48-97 (107)
110 1c20_A DEAD ringer protein; DN 45.3 7.5 0.00026 30.7 1.4 40 24-63 56-106 (128)
111 2jrz_A Histone demethylase jar 45.0 23 0.00079 27.4 4.2 38 77-114 44-93 (117)
112 2lm1_A Lysine-specific demethy 41.8 8.4 0.00029 29.3 1.1 41 23-63 47-97 (107)
113 2cxy_A BAF250B subunit, HBAF25 41.7 9.2 0.00031 30.1 1.3 40 24-63 55-104 (125)
114 2eqy_A RBP2 like, jumonji, at 39.9 32 0.0011 26.8 4.3 38 77-114 46-95 (122)
115 3i4p_A Transcriptional regulat 39.5 19 0.00064 29.0 3.0 46 73-119 3-49 (162)
116 2li6_A SWI/SNF chromatin-remod 39.5 14 0.00048 28.6 2.1 38 77-114 53-98 (116)
117 2cxy_A BAF250B subunit, HBAF25 39.4 33 0.0011 26.8 4.3 38 77-114 55-104 (125)
118 2p7v_B Sigma-70, RNA polymeras 39.2 24 0.00082 23.8 3.1 39 74-113 9-51 (68)
119 1c20_A DEAD ringer protein; DN 37.8 36 0.0012 26.7 4.3 38 77-114 56-106 (128)
120 2kk0_A AT-rich interactive dom 37.4 14 0.00048 29.9 1.8 52 24-75 68-132 (145)
121 2eqy_A RBP2 like, jumonji, at 36.9 9.7 0.00033 29.9 0.8 39 24-62 46-94 (122)
122 1kkx_A Transcription regulator 36.6 21 0.00072 28.0 2.7 38 78-115 53-98 (123)
123 1k78_A Paired box protein PAX5 36.5 1.4E+02 0.0049 22.8 7.8 67 14-85 30-106 (149)
124 2kk0_A AT-rich interactive dom 34.9 35 0.0012 27.4 3.9 39 77-115 68-119 (145)
125 2k27_A Paired box protein PAX- 32.8 1.7E+02 0.0059 22.7 9.1 67 14-85 23-99 (159)
126 1kkx_A Transcription regulator 31.4 5.7 0.0002 31.4 -1.4 27 36-63 71-97 (123)
127 2rq5_A Protein jumonji; develo 31.4 39 0.0013 26.5 3.5 93 11-132 4-111 (121)
128 3hug_A RNA polymerase sigma fa 31.0 47 0.0016 23.7 3.7 39 73-112 40-78 (92)
129 2yqf_A Ankyrin-1; death domain 29.9 54 0.0019 24.8 4.0 35 71-106 14-48 (111)
130 3i4p_A Transcriptional regulat 28.4 23 0.00079 28.4 1.7 43 20-64 3-45 (162)
131 3e7l_A Transcriptional regulat 28.3 59 0.002 21.8 3.6 33 73-106 19-51 (63)
132 2q1z_A RPOE, ECF SIGE; ECF sig 27.0 58 0.002 25.7 4.0 28 85-113 150-177 (184)
133 2of5_A Death domain-containing 27.0 53 0.0018 25.3 3.5 29 77-106 26-54 (114)
134 1ntc_A Protein (nitrogen regul 26.5 84 0.0029 22.7 4.4 36 72-108 50-85 (91)
135 1x3u_A Transcriptional regulat 26.5 85 0.0029 21.2 4.3 40 70-112 17-56 (79)
136 2dbb_A Putative HTH-type trans 26.1 60 0.0021 25.2 3.8 45 73-118 9-54 (151)
137 2e1c_A Putative HTH-type trans 26.0 54 0.0018 26.6 3.6 47 72-119 26-73 (171)
138 2jxj_A Histone demethylase jar 25.8 33 0.0011 25.3 2.0 38 77-114 40-89 (96)
139 2o71_A Death domain-containing 25.7 55 0.0019 25.3 3.4 29 77-106 26-54 (115)
140 2of5_H Leucine-rich repeat and 25.7 50 0.0017 25.4 3.2 31 75-106 13-43 (118)
141 1tty_A Sigma-A, RNA polymerase 24.9 73 0.0025 22.6 3.8 38 74-112 22-63 (87)
142 1wxp_A THO complex subunit 1; 24.7 80 0.0027 23.8 4.1 31 75-106 18-48 (110)
143 1or7_A Sigma-24, RNA polymeras 24.3 85 0.0029 24.8 4.5 28 85-113 155-182 (194)
144 2cyy_A Putative HTH-type trans 23.7 70 0.0024 25.0 3.8 46 73-119 7-53 (151)
145 2jvw_A Uncharacterized protein 23.1 35 0.0012 25.3 1.7 46 22-80 18-70 (88)
146 3ulq_B Transcriptional regulat 22.1 1.2E+02 0.0041 21.8 4.5 44 67-113 27-70 (90)
147 2lkq_A Immunoglobulin lambda-l 21.8 10 0.00035 21.3 -1.1 18 51-71 3-20 (26)
148 3c57_A Two component transcrip 20.8 1E+02 0.0034 22.3 3.9 42 69-113 27-68 (95)
149 1fse_A GERE; helix-turn-helix 20.7 1.4E+02 0.0047 19.7 4.4 42 68-112 10-51 (74)
150 1xsv_A Hypothetical UPF0122 pr 20.6 1.2E+02 0.0042 22.8 4.5 38 74-112 29-66 (113)
151 2p1m_A SKP1-like protein 1A; F 20.6 57 0.0019 26.4 2.6 35 38-80 119-153 (160)
152 1qb3_A Cyclin-dependent kinase 20.5 19 0.00066 29.4 -0.3 9 70-78 13-21 (150)
No 1
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=100.00 E-value=2.7e-35 Score=250.30 Aligned_cols=139 Identities=27% Similarity=0.516 Sum_probs=90.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCcccccchhcCccchhhhhhhhhhhcCCCCCCCCCChHHHHHHHHHHHHhcC-chh
Q 023056 12 TNKGAWTKEEDQRLIDYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTDEEDELIIKLHSLLGN-KWS 90 (288)
Q Consensus 12 ~~kg~WT~eED~~L~~~V~~~g~~~W~~Ia~~~~~~Rs~~qcr~Rw~~~L~p~~krg~WT~eED~~L~~lv~~~G~-~W~ 90 (288)
+++|+||+|||++|+++|..||.++|..||+.|++ |++.||++||.++|+|.+++++||+|||++|+++|..||. +|.
T Consensus 4 ~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~-Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~ 82 (159)
T 1h89_C 4 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPN-RTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRWS 82 (159)
T ss_dssp ----------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCHH
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCC-CCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccHH
Confidence 56999999999999999999999899999999998 9999999999999999999999999999999999999994 799
Q ss_pred hhhccCCCCCHHHHHHHHHHhhhhHhhcCCCCCCCCcchhhhhhccCCCcccccCCCCCCCCC
Q 023056 91 LIAGRLPGRTDNEIKNYWNTHIKRKLLNRGLDPQTHRPLNQIHNHNNFNKYTINNNEGIIQPK 153 (288)
Q Consensus 91 ~IA~~lpgRT~~qck~Rw~~~l~~~~~~~~~~~~ed~~L~~~~~~~~~~~~~~~~~~~~~~~~ 153 (288)
.||..|||||+.||++||.++|++.+.+++|+++||..|++++..+|..+ ..++.. +++++
T Consensus 83 ~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~g~~W-~~Ia~~-l~gRt 143 (159)
T 1h89_C 83 VIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRW-AEIAKL-LPGRT 143 (159)
T ss_dssp HHHHTSTTCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHHCSCH-HHHHTT-STTCC
T ss_pred HHHHHcCCCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHHCCCH-HHHHHH-CCCCC
Confidence 99999999999999999999999999999999999999999999998654 444433 44443
No 2
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=100.00 E-value=1.5e-33 Score=232.57 Aligned_cols=111 Identities=38% Similarity=0.696 Sum_probs=106.6
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCcccccchhcCccchhhhhhhhhhhcCCCCCCCCCChHHHHHHHHHHHHhcCchhhhh
Q 023056 14 KGAWTKEEDQRLIDYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTDEEDELIIKLHSLLGNKWSLIA 93 (288)
Q Consensus 14 kg~WT~eED~~L~~~V~~~g~~~W~~Ia~~~~~~Rs~~qcr~Rw~~~L~p~~krg~WT~eED~~L~~lv~~~G~~W~~IA 93 (288)
||+||+|||++|+.+|..||.++|..||..|++ |++.||++||.++|+|.+++|+||+|||++|+++|..||++|+.||
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~-Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia 80 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLPN-RSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVIA 80 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTT-SCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCC-CCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHHH
Confidence 799999999999999999999999999999998 9999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHhhhhHhhcCCCCCCC
Q 023056 94 GRLPGRTDNEIKNYWNTHIKRKLLNRGLDPQT 125 (288)
Q Consensus 94 ~~lpgRT~~qck~Rw~~~l~~~~~~~~~~~~e 125 (288)
..|||||+.+|++||+++|++.+....++.+.
T Consensus 81 ~~l~gRt~~~~k~rw~~~l~~~~~~~~~~~~~ 112 (131)
T 3zqc_A 81 KLIPGRTDNAIKNRWNSSISKRISTNSNHKEI 112 (131)
T ss_dssp TTSTTCCHHHHHHHHHHTTGGGCCCCTTSCCC
T ss_pred HHcCCCCHHHHHHHHHHHHHHHhhcCCCcccc
Confidence 99999999999999999999999887766553
No 3
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=100.00 E-value=1.3e-33 Score=224.21 Aligned_cols=105 Identities=49% Similarity=0.878 Sum_probs=99.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCcccccchhcCccchhhhhhhhhhhcCCCCCCCCCChHHHHHHHHHHHHhcCchh
Q 023056 11 HTNKGAWTKEEDQRLIDYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTDEEDELIIKLHSLLGNKWS 90 (288)
Q Consensus 11 ~~~kg~WT~eED~~L~~~V~~~g~~~W~~Ia~~~~~~Rs~~qcr~Rw~~~L~p~~krg~WT~eED~~L~~lv~~~G~~W~ 90 (288)
.+++|+||+|||++|+++|..||.++|..||+.|++ |++.||++||.++|+|.+++++||+|||.+|+++|..||++|+
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~-Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~ 79 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWA 79 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTT-CCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcC-CCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHH
Confidence 367999999999999999999998899999999998 9999999999999999999999999999999999999999999
Q ss_pred hhhccCCCCCHHHHHHHHHHhhhhHh
Q 023056 91 LIAGRLPGRTDNEIKNYWNTHIKRKL 116 (288)
Q Consensus 91 ~IA~~lpgRT~~qck~Rw~~~l~~~~ 116 (288)
.||..|||||+.+|++||+.++++++
T Consensus 80 ~Ia~~l~gRt~~~~k~rw~~~~~~~~ 105 (105)
T 1gv2_A 80 EIAKLLPGRTDNAIKNHWNSTMRRKV 105 (105)
T ss_dssp HHHTTCTTCCHHHHHHHHHHHTC---
T ss_pred HHHHHcCCCCHHHHHHHHHHHHhccC
Confidence 99999999999999999999988753
No 4
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=100.00 E-value=2.2e-33 Score=224.08 Aligned_cols=104 Identities=31% Similarity=0.544 Sum_probs=100.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCcccccchhcCccchhhhhhhhhhhcCCCCCCCCCChHHHHHHHHHHHHhcCchhhhh
Q 023056 14 KGAWTKEEDQRLIDYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTDEEDELIIKLHSLLGNKWSLIA 93 (288)
Q Consensus 14 kg~WT~eED~~L~~~V~~~g~~~W~~Ia~~~~~~Rs~~qcr~Rw~~~L~p~~krg~WT~eED~~L~~lv~~~G~~W~~IA 93 (288)
||+||+|||++|+.+|..||..+|..||..|++ |++.||++||.++|+|.+++|+||+|||.+|+.+|.+||++|+.||
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~-Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia 79 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMIT-RNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKIS 79 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTT-SCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCC-CCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHH
Confidence 689999999999999999998899999999998 9999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHhhhhHhhc
Q 023056 94 GRLPGRTDNEIKNYWNTHIKRKLLN 118 (288)
Q Consensus 94 ~~lpgRT~~qck~Rw~~~l~~~~~~ 118 (288)
..|||||+.+|++||+.++++....
T Consensus 80 ~~l~gRt~~~~k~rw~~l~r~~~~~ 104 (107)
T 2k9n_A 80 KFLKNRSDNNIRNRWMMIARHRAKH 104 (107)
T ss_dssp HHHSSSCHHHHHHHHHHHHHHHHSS
T ss_pred HHCCCCCHHHHHHHHHHHHhhHHHh
Confidence 9999999999999999998876543
No 5
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.98 E-value=8.7e-33 Score=227.03 Aligned_cols=108 Identities=47% Similarity=0.871 Sum_probs=102.4
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccchhcCccchhhhhhhhhhhcCCCCCCCCCChHHHHHHHHHHHHhcC
Q 023056 8 EKAHTNKGAWTKEEDQRLIDYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTDEEDELIIKLHSLLGN 87 (288)
Q Consensus 8 ~K~~~~kg~WT~eED~~L~~~V~~~g~~~W~~Ia~~~~~~Rs~~qcr~Rw~~~L~p~~krg~WT~eED~~L~~lv~~~G~ 87 (288)
.+|.+++|+||+|||++|+++|..||.++|..||+.|++ |++.||++||.++|+|.+++++||+|||++|+++|.+||+
T Consensus 21 l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~-Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~G~ 99 (128)
T 1h8a_C 21 LNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGN 99 (128)
T ss_dssp -CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSS-CCHHHHHHHHHHTTCSSSCCSCCCHHHHHHHHHHHHHHCS
T ss_pred hCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcC-CcHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHCc
Confidence 468899999999999999999999998889999999998 9999999999999999999999999999999999999999
Q ss_pred chhhhhccCCCCCHHHHHHHHHHhhhhHh
Q 023056 88 KWSLIAGRLPGRTDNEIKNYWNTHIKRKL 116 (288)
Q Consensus 88 ~W~~IA~~lpgRT~~qck~Rw~~~l~~~~ 116 (288)
+|+.||..|||||+.+|++||+.++++++
T Consensus 100 ~W~~Ia~~l~gRt~~~~k~r~~~~~~~~~ 128 (128)
T 1h8a_C 100 RWAEIAKLLPGRTDNAVKNHWNSTMRRKV 128 (128)
T ss_dssp CHHHHGGGSTTCCHHHHHHHHHTTTTC--
T ss_pred CHHHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence 99999999999999999999999987653
No 6
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.98 E-value=1.5e-32 Score=225.34 Aligned_cols=106 Identities=35% Similarity=0.626 Sum_probs=100.8
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccchhcCccchhhhhhhhhhhcCCCCCCCCCChHHHHHHHHHHHHhcC
Q 023056 8 EKAHTNKGAWTKEEDQRLIDYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTDEEDELIIKLHSLLGN 87 (288)
Q Consensus 8 ~K~~~~kg~WT~eED~~L~~~V~~~g~~~W~~Ia~~~~~~Rs~~qcr~Rw~~~L~p~~krg~WT~eED~~L~~lv~~~G~ 87 (288)
.++..++|+||+|||++|+++|..||. +|..||+.|++ |++.||++||.++|+|.+++|+||+|||++|+++|.+||+
T Consensus 5 ~~~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~~-Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~ 82 (126)
T 3osg_A 5 NLKAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFPN-RNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGR 82 (126)
T ss_dssp C-CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTCTT-CCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCS
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcCC-CCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCc
Confidence 467889999999999999999999997 79999999998 9999999999999999999999999999999999999999
Q ss_pred chhhhhccCCCCCHHHHHHHHHHhhhhH
Q 023056 88 KWSLIAGRLPGRTDNEIKNYWNTHIKRK 115 (288)
Q Consensus 88 ~W~~IA~~lpgRT~~qck~Rw~~~l~~~ 115 (288)
+|+.||..|||||+.+|++||+.++++.
T Consensus 83 ~W~~Ia~~l~gRt~~~~k~rw~~l~~k~ 110 (126)
T 3osg_A 83 QWAIIAKFFPGRTDIHIKNRWVTISNKL 110 (126)
T ss_dssp CHHHHHTTSTTCCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999999988654
No 7
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.96 E-value=2.6e-30 Score=219.56 Aligned_cols=108 Identities=47% Similarity=0.849 Sum_probs=102.6
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccchhcCccchhhhhhhhhhhcCCCCCCCCCChHHHHHHHHHHHHhcC
Q 023056 8 EKAHTNKGAWTKEEDQRLIDYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTDEEDELIIKLHSLLGN 87 (288)
Q Consensus 8 ~K~~~~kg~WT~eED~~L~~~V~~~g~~~W~~Ia~~~~~~Rs~~qcr~Rw~~~L~p~~krg~WT~eED~~L~~lv~~~G~ 87 (288)
.+|.+++|+||+|||++|+.+|..||..+|..||..|++ |++.||+.||.++|+|.+++++||+|||.+|++++..||+
T Consensus 52 l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~~-Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~g~ 130 (159)
T 1h89_C 52 LNPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGN 130 (159)
T ss_dssp TCTTCCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTSTT-CCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHHCS
T ss_pred cCCCcCCCCCChHHHHHHHHHHHHhCcccHHHHHHHcCC-CCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHHCC
Confidence 468899999999999999999999998889999999998 9999999999999999999999999999999999999999
Q ss_pred chhhhhccCCCCCHHHHHHHHHHhhhhHh
Q 023056 88 KWSLIAGRLPGRTDNEIKNYWNTHIKRKL 116 (288)
Q Consensus 88 ~W~~IA~~lpgRT~~qck~Rw~~~l~~~~ 116 (288)
+|+.||..|||||+++|++||+.++++++
T Consensus 131 ~W~~Ia~~l~gRt~~~~knr~~~~~r~~~ 159 (159)
T 1h89_C 131 RWAEIAKLLPGRTDNAIKNHWNSTMRRKV 159 (159)
T ss_dssp CHHHHHTTSTTCCHHHHHHHHHTTTCC--
T ss_pred CHHHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence 99999999999999999999999887653
No 8
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.92 E-value=1.4e-26 Score=190.08 Aligned_cols=111 Identities=23% Similarity=0.457 Sum_probs=80.8
Q ss_pred ccchhcCccchhhhhhhhhhhcCCCCCCCCCChHHHHHHHHHHHHhc-CchhhhhccCCCCCHHHHHHHHHHhhhhHhhc
Q 023056 40 LPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTDEEDELIIKLHSLLG-NKWSLIAGRLPGRTDNEIKNYWNTHIKRKLLN 118 (288)
Q Consensus 40 Ia~~~~~~Rs~~qcr~Rw~~~L~p~~krg~WT~eED~~L~~lv~~~G-~~W~~IA~~lpgRT~~qck~Rw~~~l~~~~~~ 118 (288)
||+.|++ |++.||+.||.++|+|.+++|+||+|||++|+++|..|| ++|..||..|||||+.||++||.++|++.+.+
T Consensus 1 Ia~~~~~-Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~ 79 (128)
T 1h8a_C 1 MEAVIKN-RTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKK 79 (128)
T ss_dssp ----------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSSSCC
T ss_pred CccccCC-CCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhccccccc
Confidence 7889998 999999999999999999999999999999999999999 57999999999999999999999999999999
Q ss_pred CCCCCCCCcchhhhhhccCCCcccccCCCCCCCCC
Q 023056 119 RGLDPQTHRPLNQIHNHNNFNKYTINNNEGIIQPK 153 (288)
Q Consensus 119 ~~~~~~ed~~L~~~~~~~~~~~~~~~~~~~~~~~~ 153 (288)
++|+++||..|+.++..+|.. |..++.. +++++
T Consensus 80 ~~WT~eEd~~L~~~~~~~G~~-W~~Ia~~-l~gRt 112 (128)
T 1h8a_C 80 TSWTEEEDRIIYQAHKRLGNR-WAEIAKL-LPGRT 112 (128)
T ss_dssp SCCCHHHHHHHHHHHHHHCSC-HHHHGGG-STTCC
T ss_pred ccCCHHHHHHHHHHHHHHCcC-HHHHHHH-CCCCC
Confidence 999999999999999999865 4444432 44443
No 9
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=4.8e-22 Score=146.81 Aligned_cols=67 Identities=21% Similarity=0.554 Sum_probs=64.2
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccchhcCccchhhhhhhhhhhcCCCCCCCCCChHHH
Q 023056 8 EKAHTNKGAWTKEEDQRLIDYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTDEED 75 (288)
Q Consensus 8 ~K~~~~kg~WT~eED~~L~~~V~~~g~~~W~~Ia~~~~~~Rs~~qcr~Rw~~~L~p~~krg~WT~eED 75 (288)
..|.+++|+||+|||++|+++|..||.++|..||..|++ |+++||++||.++|+|.+++++||+|||
T Consensus 3 s~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~-Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 3 SGSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHR-KSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp SCSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTT-CCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcC-CCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 357889999999999999999999998899999999998 9999999999999999999999999997
No 10
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=3e-19 Score=131.74 Aligned_cols=65 Identities=22% Similarity=0.356 Sum_probs=62.9
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHhc-CchhhhhccCCCCCHHHHHHHHHHhhhhHhhcCCCCCCCC
Q 023056 62 RPDLKRGNFTDEEDELIIKLHSLLG-NKWSLIAGRLPGRTDNEIKNYWNTHIKRKLLNRGLDPQTH 126 (288)
Q Consensus 62 ~p~~krg~WT~eED~~L~~lv~~~G-~~W~~IA~~lpgRT~~qck~Rw~~~l~~~~~~~~~~~~ed 126 (288)
.|.+++++||+|||++|+++|.+|| ++|..||..|+|||+.||++||+++|++.+.+++|+++||
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 4678999999999999999999999 8999999999999999999999999999999999999998
No 11
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.74 E-value=7.9e-19 Score=138.84 Aligned_cols=87 Identities=25% Similarity=0.465 Sum_probs=77.2
Q ss_pred CCCCCCCChHHHHHHHHHHHHhcC-chhhhhccCCCCCHHHHHHHHHHhhhhHhhcCCCCCCCCcchhhhhhccCCCccc
Q 023056 64 DLKRGNFTDEEDELIIKLHSLLGN-KWSLIAGRLPGRTDNEIKNYWNTHIKRKLLNRGLDPQTHRPLNQIHNHNNFNKYT 142 (288)
Q Consensus 64 ~~krg~WT~eED~~L~~lv~~~G~-~W~~IA~~lpgRT~~qck~Rw~~~l~~~~~~~~~~~~ed~~L~~~~~~~~~~~~~ 142 (288)
++++|+||+|||++|+++|..||. +|..||..|||||+.||+.||.++|.+.+.+++|+++||..|..++..+|.. |.
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~-W~ 79 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNR-WA 79 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSC-HH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCC-HH
Confidence 468999999999999999999995 7999999999999999999999999999999999999999999999999865 44
Q ss_pred ccCCCCCCCC
Q 023056 143 INNNEGIIQP 152 (288)
Q Consensus 143 ~~~~~~~~~~ 152 (288)
.++.. ++++
T Consensus 80 ~Ia~~-l~gR 88 (105)
T 1gv2_A 80 EIAKL-LPGR 88 (105)
T ss_dssp HHHTT-CTTC
T ss_pred HHHHH-cCCC
Confidence 44432 4443
No 12
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.73 E-value=9.6e-19 Score=143.04 Aligned_cols=83 Identities=20% Similarity=0.346 Sum_probs=76.5
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHhcCchhhhhccCCCCCHHHHHHHHHHhhhhHhhcCCCCCCCCcchhhhhhccCCCcc
Q 023056 62 RPDLKRGNFTDEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKLLNRGLDPQTHRPLNQIHNHNNFNKY 141 (288)
Q Consensus 62 ~p~~krg~WT~eED~~L~~lv~~~G~~W~~IA~~lpgRT~~qck~Rw~~~l~~~~~~~~~~~~ed~~L~~~~~~~~~~~~ 141 (288)
.+..++|+||+|||++|+++|..||.+|..||..|+|||+.||+.||.++|.+.+.+++|+++||..|..++..+|..+.
T Consensus 6 ~~~~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~~W~ 85 (126)
T 3osg_A 6 LKAAKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGRQWA 85 (126)
T ss_dssp -CBCSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCSCHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCcCHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999986544
Q ss_pred ccc
Q 023056 142 TIN 144 (288)
Q Consensus 142 ~~~ 144 (288)
.++
T Consensus 86 ~Ia 88 (126)
T 3osg_A 86 IIA 88 (126)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 13
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.73 E-value=3.2e-18 Score=152.48 Aligned_cols=106 Identities=20% Similarity=0.306 Sum_probs=91.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCC-----cccccchhcCccchhhhhhhhhhhcCCCCC-----------------
Q 023056 9 KAHTNKGAWTKEEDQRLIDYIRAHGEGC-----WRSLPKAAGLLRCGKSCRLRWINYLRPDLK----------------- 66 (288)
Q Consensus 9 K~~~~kg~WT~eED~~L~~~V~~~g~~~-----W~~Ia~~~~~~Rs~~qcr~Rw~~~L~p~~k----------------- 66 (288)
.+.++|++||+|||++|+++|++||... |..||+.|++ ||+.||+.||..+|.+.+.
T Consensus 3 ~~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpG-RT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~G 81 (246)
T 1ign_A 3 LPSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPN-HTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDG 81 (246)
T ss_dssp -----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTT-SCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTS
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCC-CCHHHHHHHHHHHHhhhcccccccCcchhhhhccCC
Confidence 3567899999999999999999998653 9999999998 9999999999999999886
Q ss_pred ------------CCCCChHHHHHHHHHHHH-h--------------------------------c---------------
Q 023056 67 ------------RGNFTDEEDELIIKLHSL-L--------------------------------G--------------- 86 (288)
Q Consensus 67 ------------rg~WT~eED~~L~~lv~~-~--------------------------------G--------------- 86 (288)
+..||.+||-.|+..+.+ | |
T Consensus 82 n~ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 161 (246)
T 1ign_A 82 NLIKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYR 161 (246)
T ss_dssp CBCEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------C
T ss_pred CceeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhc
Confidence 799999999999998876 1 1
Q ss_pred ----------CchhhhhccCCCCCHHHHHHHHHHhhhhH
Q 023056 87 ----------NKWSLIAGRLPGRTDNEIKNYWNTHIKRK 115 (288)
Q Consensus 87 ----------~~W~~IA~~lpgRT~~qck~Rw~~~l~~~ 115 (288)
..|..||+.+|+||..++|+||+..|+..
T Consensus 162 ~~~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 162 TQSRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp CCCCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred cccccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence 16999999999999999999999888654
No 14
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.71 E-value=4.4e-18 Score=137.99 Aligned_cols=83 Identities=16% Similarity=0.326 Sum_probs=77.7
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccchh----cCccchhhhhhhhhhhcC-----CCCCCC-CCChHHHHH
Q 023056 8 EKAHTNKGAWTKEEDQRLIDYIRAHGEGCWRSLPKAA----GLLRCGKSCRLRWINYLR-----PDLKRG-NFTDEEDEL 77 (288)
Q Consensus 8 ~K~~~~kg~WT~eED~~L~~~V~~~g~~~W~~Ia~~~----~~~Rs~~qcr~Rw~~~L~-----p~~krg-~WT~eED~~ 77 (288)
.++..++++||+|||+.|+++|.+||.++|..|++.+ ++ ||+.+|++||.++|+ |.+++| +|+++|+.+
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~-RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~r 89 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADH-RTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDR 89 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSS-CCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCC-CCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHH
Confidence 3567889999999999999999999998999999985 55 999999999999998 999999 999999999
Q ss_pred HHHHHHHhcCchhh
Q 023056 78 IIKLHSLLGNKWSL 91 (288)
Q Consensus 78 L~~lv~~~G~~W~~ 91 (288)
|+.++..+|++|.+
T Consensus 90 v~~~h~~~gn~~~~ 103 (121)
T 2juh_A 90 VLAAHAYWSQQQGK 103 (121)
T ss_dssp HHHHHHHHHHHHCC
T ss_pred HHHHHHHHccchhc
Confidence 99999999999987
No 15
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.71 E-value=4.8e-18 Score=126.41 Aligned_cols=58 Identities=24% Similarity=0.347 Sum_probs=47.1
Q ss_pred hhhhhhhcCCCCCCCCCChHHHHHHHHHHHHhcCchhhhhccCCCCCHHHHHHHHHHhh
Q 023056 54 RLRWINYLRPDLKRGNFTDEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHI 112 (288)
Q Consensus 54 r~Rw~~~L~p~~krg~WT~eED~~L~~lv~~~G~~W~~IA~~lpgRT~~qck~Rw~~~l 112 (288)
--||.++|+|++++++||+|||++|+++|.+||++|+.||+.| |||+++||+||+.+.
T Consensus 10 ~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L~ 67 (73)
T 2llk_A 10 GRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLMK 67 (73)
T ss_dssp ---------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHCS
T ss_pred CcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHHH
Confidence 3589999999999999999999999999999999999999999 999999999998643
No 16
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.70 E-value=6.3e-18 Score=138.99 Aligned_cols=86 Identities=20% Similarity=0.345 Sum_probs=76.6
Q ss_pred CCCCChHHHHHHHHHHHHhc-CchhhhhccCCCCCHHHHHHHHHHhhhhHhhcCCCCCCCCcchhhhhhccCCCcccccC
Q 023056 67 RGNFTDEEDELIIKLHSLLG-NKWSLIAGRLPGRTDNEIKNYWNTHIKRKLLNRGLDPQTHRPLNQIHNHNNFNKYTINN 145 (288)
Q Consensus 67 rg~WT~eED~~L~~lv~~~G-~~W~~IA~~lpgRT~~qck~Rw~~~l~~~~~~~~~~~~ed~~L~~~~~~~~~~~~~~~~ 145 (288)
+|+||+|||++|+++|..|| ++|..||..|||||+.||+.||.++|.+.+.+++|+++||..|+.++..+|..+.. ++
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~-Ia 80 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSV-IA 80 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHH-HT
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHH-HH
Confidence 68999999999999999999 78999999999999999999999999999999999999999999999999865444 44
Q ss_pred CCCCCCCCC
Q 023056 146 NEGIIQPKN 154 (288)
Q Consensus 146 ~~~~~~~~~ 154 (288)
.. +++++.
T Consensus 81 ~~-l~gRt~ 88 (131)
T 3zqc_A 81 KL-IPGRTD 88 (131)
T ss_dssp TT-STTCCH
T ss_pred HH-cCCCCH
Confidence 33 445443
No 17
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.70 E-value=3e-18 Score=136.25 Aligned_cols=78 Identities=22% Similarity=0.315 Sum_probs=72.6
Q ss_pred CCCCChHHHHHHHHHHHHhc-CchhhhhccCCCCCHHHHHHHHHHhhhhHhhcCCCCCCCCcchhhhhhccCCCcccccC
Q 023056 67 RGNFTDEEDELIIKLHSLLG-NKWSLIAGRLPGRTDNEIKNYWNTHIKRKLLNRGLDPQTHRPLNQIHNHNNFNKYTINN 145 (288)
Q Consensus 67 rg~WT~eED~~L~~lv~~~G-~~W~~IA~~lpgRT~~qck~Rw~~~l~~~~~~~~~~~~ed~~L~~~~~~~~~~~~~~~~ 145 (288)
+|+||+|||++|+++|..|| ++|..||..|||||+.||+.||.++|.+.+.+++|+++||..|+.++..+|.. |..++
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~-W~~Ia 79 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPK-WNKIS 79 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSC-HHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcC-HHHHH
Confidence 58999999999999999999 58999999999999999999999999999999999999999999999999875 44444
No 18
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.69 E-value=1.2e-17 Score=119.54 Aligned_cols=57 Identities=28% Similarity=0.570 Sum_probs=54.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccchhcCccchhhhhhhhhhhcCCCCC
Q 023056 9 KAHTNKGAWTKEEDQRLIDYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLK 66 (288)
Q Consensus 9 K~~~~kg~WT~eED~~L~~~V~~~g~~~W~~Ia~~~~~~Rs~~qcr~Rw~~~L~p~~k 66 (288)
.|.+++++||+|||++|+++|..||.++|..||+.|++ ||+.||++||.++|+|+++
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~-Rt~~qcr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPN-RTDQQCQYRWLRVLSGPSS 59 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSS-SCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccC-CCHHHHHHHHHHHcCCccC
Confidence 47899999999999999999999998889999999998 9999999999999999875
No 19
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.69 E-value=3e-17 Score=121.68 Aligned_cols=66 Identities=27% Similarity=0.322 Sum_probs=60.7
Q ss_pred cCCCCCCCCCChHHHHHHHHHHHHhcCchhhhhccCCCCCHHHHHHHHHHhhhhHhhcCCCCCCCCc
Q 023056 61 LRPDLKRGNFTDEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKLLNRGLDPQTHR 127 (288)
Q Consensus 61 L~p~~krg~WT~eED~~L~~lv~~~G~~W~~IA~~lpgRT~~qck~Rw~~~l~~~~~~~~~~~~ed~ 127 (288)
++|.+++++||+|||++|+++|..||.+|..||..|||||+.||++||+.++++.+.. ++++++..
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~-g~~~~~~s 68 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC-GLDKETPN 68 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS-CTTCCCSC
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc-CCCCCccc
Confidence 5789999999999999999999999999999999999999999999999999888776 77776653
No 20
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=2.8e-17 Score=119.73 Aligned_cols=60 Identities=20% Similarity=0.348 Sum_probs=57.4
Q ss_pred hcCCCCCCCCCChHHHHHHHHHHHHhcCchhhhhccCCCCCHHHHHHHHHHhhhhHhhcCC
Q 023056 60 YLRPDLKRGNFTDEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKLLNRG 120 (288)
Q Consensus 60 ~L~p~~krg~WT~eED~~L~~lv~~~G~~W~~IA~~lpgRT~~qck~Rw~~~l~~~~~~~~ 120 (288)
+|+|.+++++||+|||++|+++|..||.+|..||. |+|||+.||++||+++|++.+.+..
T Consensus 2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~~ 61 (66)
T 2din_A 2 SSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRDS 61 (66)
T ss_dssp CCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChHhcCCC
Confidence 69999999999999999999999999999999999 8899999999999999999988754
No 21
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.68 E-value=3.8e-17 Score=132.64 Aligned_cols=79 Identities=18% Similarity=0.310 Sum_probs=72.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccchh----cCccchhhhhhhhhhhc-----CCCCCCCCCChHH-HHHH
Q 023056 9 KAHTNKGAWTKEEDQRLIDYIRAHGEGCWRSLPKAA----GLLRCGKSCRLRWINYL-----RPDLKRGNFTDEE-DELI 78 (288)
Q Consensus 9 K~~~~kg~WT~eED~~L~~~V~~~g~~~W~~Ia~~~----~~~Rs~~qcr~Rw~~~L-----~p~~krg~WT~eE-D~~L 78 (288)
+...++++||+|||+.|+++|++||.++|..|++.+ ++ ||+.+|++||.+++ +|.++++.|+++| +++|
T Consensus 26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~-RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v 104 (122)
T 2roh_A 26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHH-RTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRV 104 (122)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCC-CCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCC-CCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHH
Confidence 345679999999999999999999998999999875 55 99999999999999 8999999999999 8999
Q ss_pred HHHHHHhcCc
Q 023056 79 IKLHSLLGNK 88 (288)
Q Consensus 79 ~~lv~~~G~~ 88 (288)
++++..+|+.
T Consensus 105 ~~~h~~~g~~ 114 (122)
T 2roh_A 105 LAAQAYWSVD 114 (122)
T ss_dssp HHHHHHHHSS
T ss_pred HHHHHHHhhH
Confidence 9999999964
No 22
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.68 E-value=2e-17 Score=115.02 Aligned_cols=52 Identities=48% Similarity=0.834 Sum_probs=49.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCcccccchhcCccchhhhhhhhhhhcCCC
Q 023056 12 TNKGAWTKEEDQRLIDYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPD 64 (288)
Q Consensus 12 ~~kg~WT~eED~~L~~~V~~~g~~~W~~Ia~~~~~~Rs~~qcr~Rw~~~L~p~ 64 (288)
+++|+||+|||++|+++|..||.++|..||+.|++ ||+.||++||.++|+|+
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~-Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPE 52 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTT-CCHHHHHHHHHHTTSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCC-CCHHHHHHHHHHHcCcC
Confidence 47899999999999999999998889999999998 99999999999999985
No 23
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.66 E-value=3e-17 Score=114.03 Aligned_cols=52 Identities=29% Similarity=0.664 Sum_probs=48.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCcccccchhcCccchhhhhhhhhhhcCCC
Q 023056 12 TNKGAWTKEEDQRLIDYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPD 64 (288)
Q Consensus 12 ~~kg~WT~eED~~L~~~V~~~g~~~W~~Ia~~~~~~Rs~~qcr~Rw~~~L~p~ 64 (288)
+++|+||+|||++|+++|..||.++|..||+.|++ ||+.||++||.++|+|+
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~-Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPN-RTDVQCQHRWQKVLNPE 52 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTT-CCHHHHHHHHHHHHSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCC-CCHHHHHHHHHHHcCcC
Confidence 47899999999999999999998789999999998 99999999999999985
No 24
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.66 E-value=4.3e-17 Score=119.82 Aligned_cols=62 Identities=24% Similarity=0.358 Sum_probs=57.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccchhc--CccchhhhhhhhhhhcCCCCCCCCCC
Q 023056 9 KAHTNKGAWTKEEDQRLIDYIRAHGEGCWRSLPKAAG--LLRCGKSCRLRWINYLRPDLKRGNFT 71 (288)
Q Consensus 9 K~~~~kg~WT~eED~~L~~~V~~~g~~~W~~Ia~~~~--~~Rs~~qcr~Rw~~~L~p~~krg~WT 71 (288)
++..++++||+|||++|+.+|..||.++|..||+.|+ + ||+.||++||.++|+|.+.++..+
T Consensus 5 ~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~-Rt~~qcr~Rw~~~l~p~i~k~~~~ 68 (69)
T 1ity_A 5 HRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNN-RTSVMLKDRWRTMKKLKLISSDSE 68 (69)
T ss_dssp TCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSS-CCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCC-CCHHHHHHHHHHHcCCCCCCCCCC
Confidence 5677899999999999999999999889999999999 7 999999999999999999988764
No 25
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.66 E-value=5.2e-17 Score=116.11 Aligned_cols=56 Identities=25% Similarity=0.455 Sum_probs=52.7
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHhc-CchhhhhccCCCCCHHHHHHHHHHhhhhHhh
Q 023056 62 RPDLKRGNFTDEEDELIIKLHSLLG-NKWSLIAGRLPGRTDNEIKNYWNTHIKRKLL 117 (288)
Q Consensus 62 ~p~~krg~WT~eED~~L~~lv~~~G-~~W~~IA~~lpgRT~~qck~Rw~~~l~~~~~ 117 (288)
+|.+++++||+|||++|+++|.+|| ++|..||..|+|||+.||++||+++|++.++
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPSS 59 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCccC
Confidence 5789999999999999999999999 7999999999999999999999999988754
No 26
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.64 E-value=2.7e-16 Score=115.56 Aligned_cols=62 Identities=27% Similarity=0.311 Sum_probs=57.0
Q ss_pred cCCCCCCCCCChHHHHHHHHHHHHhc-CchhhhhccCC--CCCHHHHHHHHHHhhhhHhhcCCCC
Q 023056 61 LRPDLKRGNFTDEEDELIIKLHSLLG-NKWSLIAGRLP--GRTDNEIKNYWNTHIKRKLLNRGLD 122 (288)
Q Consensus 61 L~p~~krg~WT~eED~~L~~lv~~~G-~~W~~IA~~lp--gRT~~qck~Rw~~~l~~~~~~~~~~ 122 (288)
..+..++++||+|||++|+++|..|| ++|..||..|+ |||+.||++||+++|++.+.+...+
T Consensus 4 ~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~~ 68 (69)
T 1ity_A 4 KHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSE 68 (69)
T ss_dssp TTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCCC
Confidence 45677899999999999999999999 79999999999 9999999999999999998876543
No 27
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.64 E-value=2.1e-16 Score=109.71 Aligned_cols=50 Identities=36% Similarity=0.621 Sum_probs=46.5
Q ss_pred CCCCCCChHHHHHHHHHHHHhcC-chhhhhccCCCCCHHHHHHHHHHhhhh
Q 023056 65 LKRGNFTDEEDELIIKLHSLLGN-KWSLIAGRLPGRTDNEIKNYWNTHIKR 114 (288)
Q Consensus 65 ~krg~WT~eED~~L~~lv~~~G~-~W~~IA~~lpgRT~~qck~Rw~~~l~~ 114 (288)
+++++||+|||++|+++|.+||. +|..||..|+|||+.||++||+++|+|
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP 51 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 46899999999999999999996 999999999999999999999999976
No 28
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.63 E-value=3.3e-16 Score=108.76 Aligned_cols=50 Identities=38% Similarity=0.753 Sum_probs=47.4
Q ss_pred CCCCCCChHHHHHHHHHHHHhcC-chhhhhccCCCCCHHHHHHHHHHhhhh
Q 023056 65 LKRGNFTDEEDELIIKLHSLLGN-KWSLIAGRLPGRTDNEIKNYWNTHIKR 114 (288)
Q Consensus 65 ~krg~WT~eED~~L~~lv~~~G~-~W~~IA~~lpgRT~~qck~Rw~~~l~~ 114 (288)
+++++||+|||++|+++|..||. +|..||..|+|||+.||++||.++|+|
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP 51 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 47899999999999999999995 799999999999999999999999876
No 29
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.60 E-value=4.8e-16 Score=111.24 Aligned_cols=54 Identities=17% Similarity=0.507 Sum_probs=51.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCCcccccchhcCccchhhhhhhhhhhcCCC
Q 023056 10 AHTNKGAWTKEEDQRLIDYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPD 64 (288)
Q Consensus 10 ~~~~kg~WT~eED~~L~~~V~~~g~~~W~~Ia~~~~~~Rs~~qcr~Rw~~~L~p~ 64 (288)
+.+.+++||+|||++|+++|..||.++|..||+.|++ ||+.||++||.++|.+.
T Consensus 4 ~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~-Rt~~qcr~r~~~~l~~~ 57 (60)
T 1x41_A 4 GSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCT-KTKEECEKHYMKYFSGP 57 (60)
T ss_dssp CCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTT-SCHHHHHHHHHHHTTCS
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCC-CCHHHHHHHHHHHccCC
Confidence 6788999999999999999999998889999999998 99999999999999764
No 30
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.60 E-value=3.3e-16 Score=113.65 Aligned_cols=55 Identities=27% Similarity=0.438 Sum_probs=49.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCcccccchhc--CccchhhhhhhhhhhcCCCCC
Q 023056 11 HTNKGAWTKEEDQRLIDYIRAHGEGCWRSLPKAAG--LLRCGKSCRLRWINYLRPDLK 66 (288)
Q Consensus 11 ~~~kg~WT~eED~~L~~~V~~~g~~~W~~Ia~~~~--~~Rs~~qcr~Rw~~~L~p~~k 66 (288)
..+|++||+|||++|+++|..||.++|..||+.++ + ||+.||++||.++++|.++
T Consensus 8 ~~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~-Rt~~qcr~Rw~nl~k~glN 64 (64)
T 3sjm_A 8 ITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVN-RTAVMIKDRWRTMKRLGMN 64 (64)
T ss_dssp --CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSS-CCHHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCC-CCHHHHHHHHHHHhccCCC
Confidence 35789999999999999999999989999999876 5 9999999999999988763
No 31
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.58 E-value=1.4e-15 Score=106.16 Aligned_cols=49 Identities=31% Similarity=0.348 Sum_probs=46.4
Q ss_pred CCCCCChHHHHHHHHHHHHhc-CchhhhhccCC--CCCHHHHHHHHHHhhhh
Q 023056 66 KRGNFTDEEDELIIKLHSLLG-NKWSLIAGRLP--GRTDNEIKNYWNTHIKR 114 (288)
Q Consensus 66 krg~WT~eED~~L~~lv~~~G-~~W~~IA~~lp--gRT~~qck~Rw~~~l~~ 114 (288)
++++||+|||++|+++|..|| ++|..||..|+ |||+.||++||.++++.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~ 52 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKL 52 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence 578999999999999999999 79999999999 99999999999998864
No 32
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.58 E-value=1.4e-15 Score=108.87 Aligned_cols=53 Identities=13% Similarity=0.221 Sum_probs=49.7
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHhc-CchhhhhccCCCCCHHHHHHHHHHhhhh
Q 023056 62 RPDLKRGNFTDEEDELIIKLHSLLG-NKWSLIAGRLPGRTDNEIKNYWNTHIKR 114 (288)
Q Consensus 62 ~p~~krg~WT~eED~~L~~lv~~~G-~~W~~IA~~lpgRT~~qck~Rw~~~l~~ 114 (288)
.+.+.+++||+|||++|+++|..|| ++|..||..|+|||+.||++||.++|.+
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~ 56 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSG 56 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccC
Confidence 4678899999999999999999999 8999999999999999999999998854
No 33
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.57 E-value=2e-15 Score=109.60 Aligned_cols=52 Identities=29% Similarity=0.455 Sum_probs=47.7
Q ss_pred CCCCCCChHHHHHHHHHHHHhc-CchhhhhccCC--CCCHHHHHHHHHHhhhhHh
Q 023056 65 LKRGNFTDEEDELIIKLHSLLG-NKWSLIAGRLP--GRTDNEIKNYWNTHIKRKL 116 (288)
Q Consensus 65 ~krg~WT~eED~~L~~lv~~~G-~~W~~IA~~lp--gRT~~qck~Rw~~~l~~~~ 116 (288)
.++++||+|||++|+++|.+|| ++|..||..++ |||+.||++||++++++.+
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~gl 63 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 63 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCC
Confidence 4789999999999999999999 79999999865 9999999999999998765
No 34
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.56 E-value=1.5e-15 Score=105.98 Aligned_cols=49 Identities=29% Similarity=0.462 Sum_probs=46.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCcccccchhc--CccchhhhhhhhhhhcC
Q 023056 13 NKGAWTKEEDQRLIDYIRAHGEGCWRSLPKAAG--LLRCGKSCRLRWINYLR 62 (288)
Q Consensus 13 ~kg~WT~eED~~L~~~V~~~g~~~W~~Ia~~~~--~~Rs~~qcr~Rw~~~L~ 62 (288)
++|+||+|||++|+++|..||.++|..||..|+ + ||+.||++||.+++.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~-Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNN-RTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSS-CCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCC-CCHHHHHHHHHHHHc
Confidence 479999999999999999999889999999999 6 999999999999874
No 35
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=1.1e-15 Score=113.89 Aligned_cols=62 Identities=19% Similarity=0.282 Sum_probs=56.9
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHhCC-----CCcccccchhcCccchhhhhhhhhhhcCCCCCCCCC
Q 023056 8 EKAHTNKGAWTKEEDQRLIDYIRAHGE-----GCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNF 70 (288)
Q Consensus 8 ~K~~~~kg~WT~eED~~L~~~V~~~g~-----~~W~~Ia~~~~~~Rs~~qcr~Rw~~~L~p~~krg~W 70 (288)
.+|.++++.||+|||++|+++|..||. .+|..||+.|++ ||+.||+.||.++|.+.++.|..
T Consensus 2 s~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~-Rt~~qcr~r~~~~l~~~~k~g~~ 68 (75)
T 2yum_A 2 SSGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGN-RTAKQVASQVQKYFIKLTKAGIP 68 (75)
T ss_dssp CCCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSS-SCHHHHHHHHHHHHGGGSTTCSC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhcCCC
Confidence 478999999999999999999999996 679999999998 99999999999999988777654
No 36
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=3.7e-15 Score=111.08 Aligned_cols=60 Identities=17% Similarity=0.117 Sum_probs=54.9
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHhc------CchhhhhccCCCCCHHHHHHHHHHhhhhHhhcCCC
Q 023056 62 RPDLKRGNFTDEEDELIIKLHSLLG------NKWSLIAGRLPGRTDNEIKNYWNTHIKRKLLNRGL 121 (288)
Q Consensus 62 ~p~~krg~WT~eED~~L~~lv~~~G------~~W~~IA~~lpgRT~~qck~Rw~~~l~~~~~~~~~ 121 (288)
+|.+.+++||+|||++|+++|..|| ++|..||..|+|||+.||++||+++|.+.+..+..
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~g~~ 68 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKAGIP 68 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTTCSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCC
Confidence 5788999999999999999999999 78999999999999999999999999887766543
No 37
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=7.9e-16 Score=112.03 Aligned_cols=58 Identities=19% Similarity=0.392 Sum_probs=53.0
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccchhcCccchhhhhhhhhhhcCCCCCCC
Q 023056 8 EKAHTNKGAWTKEEDQRLIDYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRG 68 (288)
Q Consensus 8 ~K~~~~kg~WT~eED~~L~~~V~~~g~~~W~~Ia~~~~~~Rs~~qcr~Rw~~~L~p~~krg 68 (288)
..|.+++++||+|||++|+.+|..||. +|..||+ +++ ||+.||+.||.++|+|.++++
T Consensus 3 L~P~~~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~~g-Rt~~qcr~Rw~~~l~~~~~~~ 60 (66)
T 2din_A 3 SGSSGKKTEWSREEEEKLLHLAKLMPT-QWRTIAP-IIG-RTAAQCLEHYEFLLDKAAQRD 60 (66)
T ss_dssp CSSSSSCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-HHS-SCHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-ccC-cCHHHHHHHHHHHhChHhcCC
Confidence 468999999999999999999999997 7999999 776 999999999999999876654
No 38
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.53 E-value=3.8e-15 Score=105.92 Aligned_cols=50 Identities=24% Similarity=0.495 Sum_probs=46.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCcccccchhc-Cccchhhhhhhhhhhc
Q 023056 11 HTNKGAWTKEEDQRLIDYIRAHGEGCWRSLPKAAG-LLRCGKSCRLRWINYL 61 (288)
Q Consensus 11 ~~~kg~WT~eED~~L~~~V~~~g~~~W~~Ia~~~~-~~Rs~~qcr~Rw~~~L 61 (288)
.+.+++||+|||++|+++|.+||.++|..||+.|+ + ||+.||++||.+++
T Consensus 6 p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~-Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 6 SGFDENWGADEELLLIDACETLGLGNWADIADYVGNA-RTKEECRDHYLKTY 56 (58)
T ss_dssp CSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSS-CCHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCC-CCHHHHHHHHHHHc
Confidence 45689999999999999999999989999999999 6 99999999999875
No 39
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.52 E-value=1.2e-14 Score=103.32 Aligned_cols=50 Identities=24% Similarity=0.365 Sum_probs=46.5
Q ss_pred CCCCCCCCChHHHHHHHHHHHHhc-CchhhhhccCC-CCCHHHHHHHHHHhh
Q 023056 63 PDLKRGNFTDEEDELIIKLHSLLG-NKWSLIAGRLP-GRTDNEIKNYWNTHI 112 (288)
Q Consensus 63 p~~krg~WT~eED~~L~~lv~~~G-~~W~~IA~~lp-gRT~~qck~Rw~~~l 112 (288)
..+.+++||+|||++|+++|.+|| ++|..||..|+ |||+.||++||.+++
T Consensus 5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999999 99999999999 999999999998865
No 40
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.49 E-value=8.3e-15 Score=108.46 Aligned_cols=58 Identities=19% Similarity=0.282 Sum_probs=53.7
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccchhcCccchhhhhhhhhhhcCCCCCC
Q 023056 8 EKAHTNKGAWTKEEDQRLIDYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKR 67 (288)
Q Consensus 8 ~K~~~~kg~WT~eED~~L~~~V~~~g~~~W~~Ia~~~~~~Rs~~qcr~Rw~~~L~p~~kr 67 (288)
..|.+++|+||+|||++|+++|..||. +|..||+.|++ ||+.||+.||.++|.+.++.
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~~~-Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGR-RWTKISKLIGS-RTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHSS-SCHHHHHHHHHHHHHHHSCS
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcCC-CCHHHHHHHHHHHHHHHHhc
Confidence 468899999999999999999999997 79999999998 99999999999999876655
No 41
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.20 E-value=4e-15 Score=114.70 Aligned_cols=56 Identities=29% Similarity=0.275 Sum_probs=52.8
Q ss_pred hcCCCCCCCCCChHHHHHHHHHHHHhcCchhhhhccCCCCCHHHHHHHHHHhhhhH
Q 023056 60 YLRPDLKRGNFTDEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRK 115 (288)
Q Consensus 60 ~L~p~~krg~WT~eED~~L~~lv~~~G~~W~~IA~~lpgRT~~qck~Rw~~~l~~~ 115 (288)
.+.|.+++|+||+|||++|+++|..||++|..||..|+|||+.||++||++++++.
T Consensus 9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~ 64 (89)
T 2ltp_A 9 SGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQ 64 (89)
Confidence 56788999999999999999999999999999999999999999999999988764
No 42
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.45 E-value=2.2e-14 Score=116.26 Aligned_cols=81 Identities=19% Similarity=0.222 Sum_probs=68.2
Q ss_pred cCCCCCCCCCChHHHHHHHHHHHHhc-Cchhhhhcc----CCCCCHHHHHHHHHHhhh-----hHhhcC-CCCCCCCcch
Q 023056 61 LRPDLKRGNFTDEEDELIIKLHSLLG-NKWSLIAGR----LPGRTDNEIKNYWNTHIK-----RKLLNR-GLDPQTHRPL 129 (288)
Q Consensus 61 L~p~~krg~WT~eED~~L~~lv~~~G-~~W~~IA~~----lpgRT~~qck~Rw~~~l~-----~~~~~~-~~~~~ed~~L 129 (288)
+.+..++++||+|||+.|+++|.+|| ++|+.|+.. |+|||+.+||+||+++++ +.+.++ +|+++++..|
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~rv 90 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRV 90 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHHH
Confidence 45677899999999999999999999 599999998 499999999999999998 666665 6667777888
Q ss_pred hhhhhccCCCcc
Q 023056 130 NQIHNHNNFNKY 141 (288)
Q Consensus 130 ~~~~~~~~~~~~ 141 (288)
..++..++....
T Consensus 91 ~~~h~~~gn~~~ 102 (121)
T 2juh_A 91 LAAHAYWSQQQG 102 (121)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHccchh
Confidence 888888754443
No 43
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.43 E-value=4.7e-14 Score=114.46 Aligned_cols=77 Identities=22% Similarity=0.280 Sum_probs=66.0
Q ss_pred CCCCCCCCChHHHHHHHHHHHHhc-Cchhhhhcc----CCCCCHHHHHHHHHHhh-----hhHhhcCCCCCCC-Ccchhh
Q 023056 63 PDLKRGNFTDEEDELIIKLHSLLG-NKWSLIAGR----LPGRTDNEIKNYWNTHI-----KRKLLNRGLDPQT-HRPLNQ 131 (288)
Q Consensus 63 p~~krg~WT~eED~~L~~lv~~~G-~~W~~IA~~----lpgRT~~qck~Rw~~~l-----~~~~~~~~~~~~e-d~~L~~ 131 (288)
...++++||.|||+.|+++|.+|| ++|+.|+.. |+|||+.+||+||++++ .+.+.++.|+|+| +..|..
T Consensus 27 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v~~ 106 (122)
T 2roh_A 27 QRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRVLA 106 (122)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHHHH
Confidence 345689999999999999999999 599999986 48999999999999999 4677777888888 677888
Q ss_pred hhhccCCC
Q 023056 132 IHNHNNFN 139 (288)
Q Consensus 132 ~~~~~~~~ 139 (288)
++..+|..
T Consensus 107 ~h~~~g~~ 114 (122)
T 2roh_A 107 AQAYWSVD 114 (122)
T ss_dssp HHHHHHSS
T ss_pred HHHHHhhH
Confidence 88877543
No 44
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.43 E-value=1.3e-13 Score=109.19 Aligned_cols=78 Identities=18% Similarity=0.344 Sum_probs=68.2
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccchh----cCccchhhhhhhhhhhc-----CCCCCCCCCChHHHHH-
Q 023056 8 EKAHTNKGAWTKEEDQRLIDYIRAHGEGCWRSLPKAA----GLLRCGKSCRLRWINYL-----RPDLKRGNFTDEEDEL- 77 (288)
Q Consensus 8 ~K~~~~kg~WT~eED~~L~~~V~~~g~~~W~~Ia~~~----~~~Rs~~qcr~Rw~~~L-----~p~~krg~WT~eED~~- 77 (288)
.+...++++||+|||+.|+++|.+||.++|..|++.+ ++ ||+.+|++||.+++ +|.+++|.-++.|-..
T Consensus 7 ~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~-RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~r 85 (105)
T 2aje_A 7 DPQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADH-RTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLNR 85 (105)
T ss_dssp --CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTC-CCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCC-CCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHHH
Confidence 4567789999999999999999999998999999965 55 99999999999998 6999999988888776
Q ss_pred HHHHHHHhc
Q 023056 78 IIKLHSLLG 86 (288)
Q Consensus 78 L~~lv~~~G 86 (288)
+++|+..+|
T Consensus 86 v~~~~~~~~ 94 (105)
T 2aje_A 86 VLNAHGYWT 94 (105)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888887765
No 45
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.41 E-value=1.3e-13 Score=102.45 Aligned_cols=57 Identities=21% Similarity=0.319 Sum_probs=48.2
Q ss_pred CcCCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccchhcCccchhhhhhhhhhhcCCCCCC
Q 023056 7 CEKAHTNKGAWTKEEDQRLIDYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKR 67 (288)
Q Consensus 7 ~~K~~~~kg~WT~eED~~L~~~V~~~g~~~W~~Ia~~~~~~Rs~~qcr~Rw~~~L~p~~kr 67 (288)
...|.+++|+||+|||++|+++|..||.+ |..||+.| + ||+.+|+.||.. |......
T Consensus 16 ~ldP~i~k~~wT~EED~~L~~l~~~~G~k-W~~IA~~l-g-Rt~~q~knRw~~-L~~~~~~ 72 (73)
T 2llk_A 16 FQGDRNHVGKYTPEEIEKLKELRIKHGND-WATIGAAL-G-RSASSVKDRCRL-MKDTCNT 72 (73)
T ss_dssp ---CCCCCCSSCHHHHHHHHHHHHHHSSC-HHHHHHHH-T-SCHHHHHHHHHH-CSCCCSC
T ss_pred ecCCCCCCCCCCHHHHHHHHHHHHHHCCC-HHHHHHHh-C-CCHHHHHHHHHH-HHHHccC
Confidence 45789999999999999999999999966 99999999 6 999999999984 5545443
No 46
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.40 E-value=2.3e-13 Score=103.55 Aligned_cols=69 Identities=19% Similarity=0.410 Sum_probs=60.0
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCcccccch----hcCccchhhhhhhhhhhc-----CCCCCCC-CCChHHHHHHHHHHHH
Q 023056 15 GAWTKEEDQRLIDYIRAHGEGCWRSLPKA----AGLLRCGKSCRLRWINYL-----RPDLKRG-NFTDEEDELIIKLHSL 84 (288)
Q Consensus 15 g~WT~eED~~L~~~V~~~g~~~W~~Ia~~----~~~~Rs~~qcr~Rw~~~L-----~p~~krg-~WT~eED~~L~~lv~~ 84 (288)
++||+|||+.|+++|.+||.++|..|++. |++ ||+.+|++||.+++ +|.+++| +..++...+++.++..
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~-RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a~ 79 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADH-RTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAY 79 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTT-SCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCC-CCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHHH
Confidence 47999999999999999999899999986 676 99999999999988 6776665 6777777889888865
No 47
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.38 E-value=2.5e-13 Score=121.00 Aligned_cols=71 Identities=23% Similarity=0.391 Sum_probs=61.3
Q ss_pred CCCCCCCCChHHHHHHHHHHHHhcCc------hhhhhccCCCCCHHHHHHHHHHhhhhHhhcCCCCCCCCcchhhhhh
Q 023056 63 PDLKRGNFTDEEDELIIKLHSLLGNK------WSLIAGRLPGRTDNEIKNYWNTHIKRKLLNRGLDPQTHRPLNQIHN 134 (288)
Q Consensus 63 p~~krg~WT~eED~~L~~lv~~~G~~------W~~IA~~lpgRT~~qck~Rw~~~l~~~~~~~~~~~~ed~~L~~~~~ 134 (288)
+.+++++||+|||++|+++|.++|++ |..||+.|||||+++||+||+++|++.+... |+.+++..|+....
T Consensus 4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln~v-y~~ded~~Li~d~~ 80 (246)
T 1ign_A 4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYV-YEVDKFGKLVRDDD 80 (246)
T ss_dssp ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCE-ECBCTTSCBCBCTT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcccc-cccCcchhhhhccC
Confidence 35778999999999999999999975 9999999999999999999999999998854 99999888776655
No 48
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.36 E-value=6.4e-13 Score=98.69 Aligned_cols=51 Identities=12% Similarity=0.242 Sum_probs=46.9
Q ss_pred CCCCCCCCChHHHHHHHHHHHHhc----CchhhhhccCCCCCHHHHHHHHHHhhh
Q 023056 63 PDLKRGNFTDEEDELIIKLHSLLG----NKWSLIAGRLPGRTDNEIKNYWNTHIK 113 (288)
Q Consensus 63 p~~krg~WT~eED~~L~~lv~~~G----~~W~~IA~~lpgRT~~qck~Rw~~~l~ 113 (288)
+.+.+++||.+||.+|+.++..|| ++|..||..|||||..+|++||..++.
T Consensus 14 ~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 14 ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVS 68 (73)
T ss_dssp TTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred cccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 356788999999999999999999 689999999999999999999998764
No 49
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.35 E-value=6.5e-13 Score=100.14 Aligned_cols=52 Identities=19% Similarity=0.439 Sum_probs=48.3
Q ss_pred CcCCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccchhcCccchhhhhhhhhhh
Q 023056 7 CEKAHTNKGAWTKEEDQRLIDYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINY 60 (288)
Q Consensus 7 ~~K~~~~kg~WT~eED~~L~~~V~~~g~~~W~~Ia~~~~~~Rs~~qcr~Rw~~~ 60 (288)
..+....++.||+|||++|+++|..|| ++|..||++|++ ||..||+.||.++
T Consensus 11 ~~~~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~~-RT~~qcr~r~~~~ 62 (79)
T 2yus_A 11 KSKGASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVGS-RTQDECILHFLRL 62 (79)
T ss_dssp CCCSSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHSS-CCHHHHHHHHTTS
T ss_pred CccccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcCC-CCHHHHHHHHHHh
Confidence 356667799999999999999999999 889999999998 9999999999998
No 50
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.32 E-value=7.5e-13 Score=99.79 Aligned_cols=48 Identities=15% Similarity=0.288 Sum_probs=44.8
Q ss_pred CCCCCCCChHHHHHHHHHHHHhcCchhhhhccCCCCCHHHHHHHHHHh
Q 023056 64 DLKRGNFTDEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTH 111 (288)
Q Consensus 64 ~~krg~WT~eED~~L~~lv~~~G~~W~~IA~~lpgRT~~qck~Rw~~~ 111 (288)
...+++||+|||.+|+++|.+||++|..||.+|++||+.||+.||.++
T Consensus 15 ~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 15 ASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL 62 (79)
T ss_dssp SCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred cccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 456789999999999999999999999999999999999999999764
No 51
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.31 E-value=3.2e-12 Score=101.18 Aligned_cols=51 Identities=24% Similarity=0.366 Sum_probs=47.2
Q ss_pred CCCCCCCCChHHHHHHHHHHHHhc-CchhhhhccC----CCCCHHHHHHHHHHhhh
Q 023056 63 PDLKRGNFTDEEDELIIKLHSLLG-NKWSLIAGRL----PGRTDNEIKNYWNTHIK 113 (288)
Q Consensus 63 p~~krg~WT~eED~~L~~lv~~~G-~~W~~IA~~l----pgRT~~qck~Rw~~~l~ 113 (288)
+..++++||+|||+.|+++|.+|| ++|+.|+..+ +|||+.+||+||+++++
T Consensus 9 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk 64 (105)
T 2aje_A 9 QRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVH 64 (105)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHh
Confidence 456789999999999999999999 5999999965 89999999999999996
No 52
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.31 E-value=5.9e-13 Score=98.88 Aligned_cols=55 Identities=16% Similarity=0.426 Sum_probs=50.4
Q ss_pred CcCCCCCCCCCCHHHHHHHHHHHHHhCC---CCcccccchhcCccchhhhhhhhhhhcC
Q 023056 7 CEKAHTNKGAWTKEEDQRLIDYIRAHGE---GCWRSLPKAAGLLRCGKSCRLRWINYLR 62 (288)
Q Consensus 7 ~~K~~~~kg~WT~eED~~L~~~V~~~g~---~~W~~Ia~~~~~~Rs~~qcr~Rw~~~L~ 62 (288)
-+++.+.++.||++||.+|+.+|..||. ..|..||++||+ ||..+|+.||.+++.
T Consensus 11 ~~~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpG-RT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 11 KERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPS-KSKEDCIARYKLLVS 68 (73)
T ss_dssp CCTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSS-SCHHHHHHHHHHHHS
T ss_pred ccccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 5778889999999999999999999993 469999999998 999999999998765
No 53
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.29 E-value=3.2e-12 Score=97.17 Aligned_cols=48 Identities=25% Similarity=0.439 Sum_probs=44.1
Q ss_pred CCCChHHHHHHHHHHHHhc-Cchhhhhcc----CCCCCHHHHHHHHHHhhhhH
Q 023056 68 GNFTDEEDELIIKLHSLLG-NKWSLIAGR----LPGRTDNEIKNYWNTHIKRK 115 (288)
Q Consensus 68 g~WT~eED~~L~~lv~~~G-~~W~~IA~~----lpgRT~~qck~Rw~~~l~~~ 115 (288)
.+||+|||+.|+++|.+|| ++|+.|++. |+|||+.+||+||+++++..
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~ 53 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA 53 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhc
Confidence 4799999999999999999 599999985 89999999999999999644
No 54
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.27 E-value=6.4e-12 Score=89.86 Aligned_cols=50 Identities=24% Similarity=0.377 Sum_probs=45.9
Q ss_pred CCCCCCChHHHHHHHHHHHHhcCchhhhh---ccCCCCCHHHHHHHHHHhhhh
Q 023056 65 LKRGNFTDEEDELIIKLHSLLGNKWSLIA---GRLPGRTDNEIKNYWNTHIKR 114 (288)
Q Consensus 65 ~krg~WT~eED~~L~~lv~~~G~~W~~IA---~~lpgRT~~qck~Rw~~~l~~ 114 (288)
-++.+||+|||+.|+++|++||.+|..|+ ..+++||...+++||+++.+.
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~ 58 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISG 58 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTC
T ss_pred CCCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhc
Confidence 36789999999999999999999999999 577999999999999998764
No 55
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.92 E-value=4.5e-13 Score=103.18 Aligned_cols=55 Identities=20% Similarity=0.431 Sum_probs=50.5
Q ss_pred CcCCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccchhcCccchhhhhhhhhhhcCC
Q 023056 7 CEKAHTNKGAWTKEEDQRLIDYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRP 63 (288)
Q Consensus 7 ~~K~~~~kg~WT~eED~~L~~~V~~~g~~~W~~Ia~~~~~~Rs~~qcr~Rw~~~L~p 63 (288)
..-|.+++|+||+|||++|+++|..||. +|..||..|++ ||+.||+.||.++|..
T Consensus 9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~~l~g-Rt~~q~k~r~~~~lrk 63 (89)
T 2ltp_A 9 SGRENLYFQGWTEEEMGTAKKGLLEHGR-NWSAIARMVGS-KTVSQCKNFYFNYKKR 63 (89)
Confidence 3567889999999999999999999997 69999999998 9999999999998854
No 56
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.12 E-value=5.9e-11 Score=92.01 Aligned_cols=50 Identities=16% Similarity=0.396 Sum_probs=45.2
Q ss_pred CCCCCChHHHHHHHHHHHHhc----CchhhhhccCCCCCHHHHHHHHHHhhhhH
Q 023056 66 KRGNFTDEEDELIIKLHSLLG----NKWSLIAGRLPGRTDNEIKNYWNTHIKRK 115 (288)
Q Consensus 66 krg~WT~eED~~L~~lv~~~G----~~W~~IA~~lpgRT~~qck~Rw~~~l~~~ 115 (288)
.+++||.|||.+|+.++..|| ++|..||..|||||.++|++||..++...
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv 60 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDI 60 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 467999999999999999996 67999999999999999999999987553
No 57
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=99.01 E-value=4.3e-10 Score=86.91 Aligned_cols=66 Identities=15% Similarity=0.233 Sum_probs=59.7
Q ss_pred hhhhhhhhhhcCCCCCCCCCChHHHHHHHHHHHHhcCchhhhhccC-----CCCCHHHHHHHHHHhhhhHhhcCC
Q 023056 51 KSCRLRWINYLRPDLKRGNFTDEEDELIIKLHSLLGNKWSLIAGRL-----PGRTDNEIKNYWNTHIKRKLLNRG 120 (288)
Q Consensus 51 ~qcr~Rw~~~L~p~~krg~WT~eED~~L~~lv~~~G~~W~~IA~~l-----pgRT~~qck~Rw~~~l~~~~~~~~ 120 (288)
.=+.++|.++|.+ ++||.||+..|++|+..||.+|..|+..+ ++||..++|+||..+.+..+..++
T Consensus 18 ~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r~ 88 (93)
T 3hm5_A 18 VYSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVRA 88 (93)
T ss_dssp CCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred ccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 4567899999976 79999999999999999999999999998 589999999999999888777765
No 58
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=98.97 E-value=1.6e-10 Score=89.55 Aligned_cols=48 Identities=10% Similarity=0.284 Sum_probs=43.3
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC---CCcccccchhcCccchhhhhhhhhhhc
Q 023056 13 NKGAWTKEEDQRLIDYIRAHGE---GCWRSLPKAAGLLRCGKSCRLRWINYL 61 (288)
Q Consensus 13 ~kg~WT~eED~~L~~~V~~~g~---~~W~~Ia~~~~~~Rs~~qcr~Rw~~~L 61 (288)
.++.||+|||++|+.++..|+. ..|..||+.||+ ||..+|+.||..++
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpG-RT~~q~k~ry~~l~ 57 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEG-RTPEEVKKHYEILV 57 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTT-CCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence 3789999999999999999973 459999999998 99999999999865
No 59
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.96 E-value=7.5e-10 Score=79.19 Aligned_cols=48 Identities=21% Similarity=0.207 Sum_probs=43.9
Q ss_pred CCCCCChHHHHHHHHHHHHhcCchhhhhccCCCCCHHHHHHHHHHhhh
Q 023056 66 KRGNFTDEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIK 113 (288)
Q Consensus 66 krg~WT~eED~~L~~lv~~~G~~W~~IA~~lpgRT~~qck~Rw~~~l~ 113 (288)
..++||++|+.++++++..||.+|..||..||+||..+|..+|+...+
T Consensus 11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~Kk 58 (61)
T 2eqr_A 11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTKK 58 (61)
T ss_dssp CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHTC
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhcC
Confidence 357899999999999999999999999999999999999999976543
No 60
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.82 E-value=1.9e-09 Score=77.04 Aligned_cols=49 Identities=18% Similarity=0.270 Sum_probs=43.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCcccccc---hhcCccchhhhhhhhhhhcC
Q 023056 12 TNKGAWTKEEDQRLIDYIRAHGEGCWRSLPK---AAGLLRCGKSCRLRWINYLR 62 (288)
Q Consensus 12 ~~kg~WT~eED~~L~~~V~~~g~~~W~~Ia~---~~~~~Rs~~qcr~Rw~~~L~ 62 (288)
.++.+||+|||+.|++.|++||. +|..|+. .+.+ ||...+.+||.+...
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~~-RT~VdLKdk~r~L~k 57 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQKG-RRAVDLAHKYHRLIS 57 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCTT-CCHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCccC-cccchHHHHHHHHHh
Confidence 46899999999999999999997 7999994 5555 999999999998764
No 61
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.78 E-value=6.6e-09 Score=76.77 Aligned_cols=50 Identities=16% Similarity=0.252 Sum_probs=44.9
Q ss_pred CCCCCCCChHHHHHHHHHHHHhc----CchhhhhccCCCCCHHHHHHHHHHhhhh
Q 023056 64 DLKRGNFTDEEDELIIKLHSLLG----NKWSLIAGRLPGRTDNEIKNYWNTHIKR 114 (288)
Q Consensus 64 ~~krg~WT~eED~~L~~lv~~~G----~~W~~IA~~lpgRT~~qck~Rw~~~l~~ 114 (288)
..+.+.||.|||.+|.+++..|+ .+|.+||..| |||..+|+.||..+...
T Consensus 5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHS
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHh
Confidence 45678999999999999999997 5799999998 99999999999887654
No 62
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.77 E-value=5.8e-09 Score=74.50 Aligned_cols=53 Identities=13% Similarity=0.151 Sum_probs=47.0
Q ss_pred CcCCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccchhcCccchhhhhhhhhhhc
Q 023056 7 CEKAHTNKGAWTKEEDQRLIDYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61 (288)
Q Consensus 7 ~~K~~~~kg~WT~eED~~L~~~V~~~g~~~W~~Ia~~~~~~Rs~~qcr~Rw~~~L 61 (288)
.++.....+.||+||++++++++..|| .+|..||..|++ ||..+|..+|....
T Consensus 5 ~~~~r~~~~~WT~eE~~~F~~~~~~~g-k~w~~Ia~~l~~-rt~~~~v~~Yy~~K 57 (61)
T 2eqr_A 5 SSGDRQFMNVWTDHEKEIFKDKFIQHP-KNFGLIASYLER-KSVPDCVLYYYLTK 57 (61)
T ss_dssp CCCCCSCCCSCCHHHHHHHHHHHHHST-TCHHHHHHHCTT-SCHHHHHHHHHHHT
T ss_pred cccccccCCCCCHHHHHHHHHHHHHhC-CCHHHHHHHcCC-CCHHHHHHHHHHhc
Confidence 456666789999999999999999999 579999999998 99999999997643
No 63
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.63 E-value=1.8e-08 Score=89.02 Aligned_cols=49 Identities=18% Similarity=0.323 Sum_probs=45.4
Q ss_pred CCCCCChHHHHHHHHHHHHhcCchhhhhccCCCCCHHHHHHHHHHhhhh
Q 023056 66 KRGNFTDEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKR 114 (288)
Q Consensus 66 krg~WT~eED~~L~~lv~~~G~~W~~IA~~lpgRT~~qck~Rw~~~l~~ 114 (288)
..++||+||+.++++++..||++|..||+.|++||..||+++|+++.++
T Consensus 132 ~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 132 CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp CCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred cCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 3579999999999999999999999999999999999999999877643
No 64
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.53 E-value=3.9e-08 Score=72.62 Aligned_cols=51 Identities=14% Similarity=0.223 Sum_probs=44.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCC---CCcccccchhcCccchhhhhhhhhhhcCC
Q 023056 11 HTNKGAWTKEEDQRLIDYIRAHGE---GCWRSLPKAAGLLRCGKSCRLRWINYLRP 63 (288)
Q Consensus 11 ~~~kg~WT~eED~~L~~~V~~~g~---~~W~~Ia~~~~~~Rs~~qcr~Rw~~~L~p 63 (288)
....+.||.|||.+|.+++..|+. ..|..||+.+ + ||..+|+.||..+...
T Consensus 5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-g-Rt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-G-RSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-T-SCHHHHHHHHHHHHHS
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-C-CCHHHHHHHHHHHHHh
Confidence 456789999999999999999984 3599999998 4 9999999999876543
No 65
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.45 E-value=5.8e-08 Score=68.96 Aligned_cols=48 Identities=23% Similarity=0.533 Sum_probs=42.4
Q ss_pred CCCCCHHHHHHHHHHHHHh--------CCCCcccccc-hhcCccchhhhhhhhhhhcC
Q 023056 14 KGAWTKEEDQRLIDYIRAH--------GEGCWRSLPK-AAGLLRCGKSCRLRWINYLR 62 (288)
Q Consensus 14 kg~WT~eED~~L~~~V~~~--------g~~~W~~Ia~-~~~~~Rs~~qcr~Rw~~~L~ 62 (288)
+.+||+|||.+|+.+|..| |..-|+.+|+ .++. +|..+||+||.++|.
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~-HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQ-HSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSS-CCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCC-CCHHHHHHHHHHHcc
Confidence 5679999999999999999 4445999999 7887 999999999999874
No 66
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=98.44 E-value=1e-07 Score=93.01 Aligned_cols=45 Identities=18% Similarity=0.316 Sum_probs=42.0
Q ss_pred CCCChHHHHHHHHHHHHhcCchhhhhccCCCCCHHHHHHHHHHhh
Q 023056 68 GNFTDEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHI 112 (288)
Q Consensus 68 g~WT~eED~~L~~lv~~~G~~W~~IA~~lpgRT~~qck~Rw~~~l 112 (288)
..||.+|..++++++.+||.+|..||..+..||..||+++|..+.
T Consensus 381 ~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~k 425 (482)
T 2xag_B 381 ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYR 425 (482)
T ss_dssp SCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 589999999999999999999999999999999999999997543
No 67
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.43 E-value=2.4e-07 Score=68.43 Aligned_cols=46 Identities=15% Similarity=0.221 Sum_probs=42.2
Q ss_pred CCCCChHHHHHHHHHHHHhc----CchhhhhccCCCCCHHHHHHHHHHhh
Q 023056 67 RGNFTDEEDELIIKLHSLLG----NKWSLIAGRLPGRTDNEIKNYWNTHI 112 (288)
Q Consensus 67 rg~WT~eED~~L~~lv~~~G----~~W~~IA~~lpgRT~~qck~Rw~~~l 112 (288)
...||.+|+.+|..++..|+ ++|..||..+||||..+|+.||..++
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~ 57 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENP 57 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 46899999999999999997 46999999999999999999998764
No 68
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.41 E-value=2.4e-07 Score=65.73 Aligned_cols=47 Identities=26% Similarity=0.428 Sum_probs=42.0
Q ss_pred CCCCChHHHHHHHHHHHHh--------cC-chhhhhc-cCCCCCHHHHHHHHHHhhh
Q 023056 67 RGNFTDEEDELIIKLHSLL--------GN-KWSLIAG-RLPGRTDNEIKNYWNTHIK 113 (288)
Q Consensus 67 rg~WT~eED~~L~~lv~~~--------G~-~W~~IA~-~lpgRT~~qck~Rw~~~l~ 113 (288)
+.+||+|||..|+++|..+ |+ -|..++. .+|++|..++|+||...|+
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence 5689999999999999999 42 3999999 7999999999999988764
No 69
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.37 E-value=2e-07 Score=68.85 Aligned_cols=48 Identities=23% Similarity=0.504 Sum_probs=43.3
Q ss_pred CCCCCHHHHHHHHHHHHHhCC---CCcccccchhcCccchhhhhhhhhhhcC
Q 023056 14 KGAWTKEEDQRLIDYIRAHGE---GCWRSLPKAAGLLRCGKSCRLRWINYLR 62 (288)
Q Consensus 14 kg~WT~eED~~L~~~V~~~g~---~~W~~Ia~~~~~~Rs~~qcr~Rw~~~L~ 62 (288)
...||.+|+.+|..++..|+. ..|..||..+|+ ||..+|+.||..++.
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~g-KT~eE~~~hY~~l~~ 58 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGS-RSPEECQRKYMENPR 58 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTT-SCHHHHHHHHHHSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCC-CCHHHHHHHHHHHHh
Confidence 468999999999999999975 459999999999 999999999998754
No 70
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.34 E-value=2.9e-07 Score=81.41 Aligned_cols=51 Identities=22% Similarity=0.378 Sum_probs=45.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCCcccccchhcCccchhhhhhhhhhhcC
Q 023056 10 AHTNKGAWTKEEDQRLIDYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLR 62 (288)
Q Consensus 10 ~~~~kg~WT~eED~~L~~~V~~~g~~~W~~Ia~~~~~~Rs~~qcr~Rw~~~L~ 62 (288)
.....++||+||++++++++..|| ++|..||+.+++ ||..||+.+|.++..
T Consensus 129 ~~k~s~~WTeEE~~lFleAl~kYG-KDW~~IAk~VgT-KT~~QcKnfY~~~kK 179 (235)
T 2iw5_B 129 IQKCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIGN-KSVVQVKNFFVNYRR 179 (235)
T ss_dssp CCCCCSSCCHHHHHHHHHHHHHHS-SCHHHHHHHHSS-CCHHHHHHHHHHTTT
T ss_pred CCccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 334578999999999999999999 579999999998 999999999988763
No 71
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.17 E-value=3.7e-06 Score=60.27 Aligned_cols=49 Identities=16% Similarity=0.232 Sum_probs=44.8
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHhcCchhhhhc-cCCCCCHHHHHHHHHH
Q 023056 62 RPDLKRGNFTDEEDELIIKLHSLLGNKWSLIAG-RLPGRTDNEIKNYWNT 110 (288)
Q Consensus 62 ~p~~krg~WT~eED~~L~~lv~~~G~~W~~IA~-~lpgRT~~qck~Rw~~ 110 (288)
.|.++...||+||-.+..+++..||.+|..|+. .|++||..+|...|+.
T Consensus 4 ~p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~ 53 (63)
T 2yqk_A 4 GSSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYY 53 (63)
T ss_dssp CCCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHH
T ss_pred CCCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhc
Confidence 367788899999999999999999999999999 5899999999988864
No 72
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=98.16 E-value=4e-06 Score=77.59 Aligned_cols=99 Identities=23% Similarity=0.279 Sum_probs=79.7
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCcccccchhcCccchhhhhh-------hhhhh---------------------------
Q 023056 15 GAWTKEEDQRLIDYIRAHGEGCWRSLPKAAGLLRCGKSCRL-------RWINY--------------------------- 60 (288)
Q Consensus 15 g~WT~eED~~L~~~V~~~g~~~W~~Ia~~~~~~Rs~~qcr~-------Rw~~~--------------------------- 60 (288)
+.||..+...++.++.+||..+|..||..|++ +|...++. ||..+
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~-Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~l 189 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVEG-KTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKAL 189 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTT-CCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHHHhcC-CCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999999999987 88877754 22100
Q ss_pred -------------c---CCCCCCCCCChHHHHHHHHHHHHhc----Cchhhhhc------------cCCCCCHHHHHHHH
Q 023056 61 -------------L---RPDLKRGNFTDEEDELIIKLHSLLG----NKWSLIAG------------RLPGRTDNEIKNYW 108 (288)
Q Consensus 61 -------------L---~p~~krg~WT~eED~~L~~lv~~~G----~~W~~IA~------------~lpgRT~~qck~Rw 108 (288)
| .+..+...||++||..|+-++.+|| +.|..|.. .+..||+.+|..|.
T Consensus 190 ~~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc 269 (304)
T 1ofc_X 190 DQKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRC 269 (304)
T ss_dssp HHHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHH
T ss_pred HHHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHH
Confidence 0 0223446899999999999999998 57999962 34689999999999
Q ss_pred HHhhhh
Q 023056 109 NTHIKR 114 (288)
Q Consensus 109 ~~~l~~ 114 (288)
.++++-
T Consensus 270 ~tLi~~ 275 (304)
T 1ofc_X 270 NTLITL 275 (304)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998853
No 73
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.94 E-value=2.7e-06 Score=62.58 Aligned_cols=43 Identities=21% Similarity=0.326 Sum_probs=38.3
Q ss_pred CCCCChHHHHHHHHHHHHhcC----chhhhhccCCCCCHHHHHHHHH
Q 023056 67 RGNFTDEEDELIIKLHSLLGN----KWSLIAGRLPGRTDNEIKNYWN 109 (288)
Q Consensus 67 rg~WT~eED~~L~~lv~~~G~----~W~~IA~~lpgRT~~qck~Rw~ 109 (288)
.+.||.+|+.+|..++..|+. +|.+||..+||||..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 458999999999999999973 7999999999999999999883
No 74
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=97.92 E-value=1.9e-05 Score=60.71 Aligned_cols=62 Identities=16% Similarity=0.266 Sum_probs=52.6
Q ss_pred hhhhhhcCCCCCCCCCChHHHHHHHHHHHHhcCchhhhhccCC-----CCCHHHHHHHHHHhhhhHhhcCC
Q 023056 55 LRWINYLRPDLKRGNFTDEEDELIIKLHSLLGNKWSLIAGRLP-----GRTDNEIKNYWNTHIKRKLLNRG 120 (288)
Q Consensus 55 ~Rw~~~L~p~~krg~WT~eED~~L~~lv~~~G~~W~~IA~~lp-----gRT~~qck~Rw~~~l~~~~~~~~ 120 (288)
+-|..+|. ...||.||...|++|+..|+-+|..|+..+. +||..++|.||..+.++.+..+.
T Consensus 22 eEY~~~L~----~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~r~ 88 (93)
T 4iej_A 22 QEYQLYLH----DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVRA 88 (93)
T ss_dssp HHHHHHTC----BTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhC----CCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHhhC
Confidence 34566664 3689999999999999999999999998863 79999999999998887776654
No 75
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.89 E-value=3.5e-06 Score=61.97 Aligned_cols=44 Identities=9% Similarity=0.192 Sum_probs=39.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCCC---CcccccchhcCccchhhhhhhhh
Q 023056 14 KGAWTKEEDQRLIDYIRAHGEG---CWRSLPKAAGLLRCGKSCRLRWI 58 (288)
Q Consensus 14 kg~WT~eED~~L~~~V~~~g~~---~W~~Ia~~~~~~Rs~~qcr~Rw~ 58 (288)
.+.||.+|+++|..++..|... .|.+||..+|+ ||..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpG-KT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKG-RTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCS-SCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCC-CCHHHHHHHHH
Confidence 4579999999999999999754 59999999998 99999999985
No 76
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.79 E-value=2.1e-05 Score=59.96 Aligned_cols=45 Identities=22% Similarity=0.403 Sum_probs=42.1
Q ss_pred CCChHHHHHHHHHHHHhcC---chhhhhccCCCCCHHHHHHHHHHhhh
Q 023056 69 NFTDEEDELIIKLHSLLGN---KWSLIAGRLPGRTDNEIKNYWNTHIK 113 (288)
Q Consensus 69 ~WT~eED~~L~~lv~~~G~---~W~~IA~~lpgRT~~qck~Rw~~~l~ 113 (288)
-||.|||..|+....+-|. .|..||..|.+|+.+|+++||+.+++
T Consensus 35 lWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~ 82 (95)
T 1ug2_A 35 LWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQ 82 (95)
T ss_dssp SSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHH
T ss_pred EeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHH
Confidence 6999999999999999985 79999999999999999999998774
No 77
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.71 E-value=2.9e-05 Score=55.49 Aligned_cols=50 Identities=14% Similarity=0.179 Sum_probs=44.1
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccc-hhcCccchhhhhhhhhh
Q 023056 8 EKAHTNKGAWTKEEDQRLIDYIRAHGEGCWRSLPK-AAGLLRCGKSCRLRWIN 59 (288)
Q Consensus 8 ~K~~~~kg~WT~eED~~L~~~V~~~g~~~W~~Ia~-~~~~~Rs~~qcr~Rw~~ 59 (288)
..|......||+||-++..+++..||. +|..|++ .+++ |+..+|...|..
T Consensus 3 ~~p~~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~~-Kt~~~~v~fYY~ 53 (63)
T 2yqk_A 3 SGSSGIEKCWTEDEVKRFVKGLRQYGK-NFFRIRKELLPN-KETGELITFYYY 53 (63)
T ss_dssp CCCCCCCCSCCHHHHHHHHHHHHHTCS-CHHHHHHHSCTT-SCHHHHHHHHHH
T ss_pred CCCCcCCCCcCHHHHHHHHHHHHHhCc-cHHHHHHHHcCC-CcHHHHHHHHhc
Confidence 357777889999999999999999995 6999999 5888 999999987754
No 78
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=96.89 E-value=4.9e-06 Score=60.13 Aligned_cols=44 Identities=18% Similarity=0.389 Sum_probs=40.9
Q ss_pred CCChHHHHHHHHHHHHhcC---chhhhhccCCCCCHHHHHHHHHHhhh
Q 023056 69 NFTDEEDELIIKLHSLLGN---KWSLIAGRLPGRTDNEIKNYWNTHIK 113 (288)
Q Consensus 69 ~WT~eED~~L~~lv~~~G~---~W~~IA~~lpgRT~~qck~Rw~~~l~ 113 (288)
.||.|||..|+....+-|. .|..||..| +||++||.+||..+++
T Consensus 16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMK 62 (70)
Confidence 6999999999999999995 799999999 9999999999988763
No 79
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.68 E-value=6.7e-05 Score=54.76 Aligned_cols=44 Identities=18% Similarity=0.237 Sum_probs=40.6
Q ss_pred CCCCChHHHHHHHHHHHHhcCchhhhhc-cCCCCCHHHHHHHHHH
Q 023056 67 RGNFTDEEDELIIKLHSLLGNKWSLIAG-RLPGRTDNEIKNYWNT 110 (288)
Q Consensus 67 rg~WT~eED~~L~~lv~~~G~~W~~IA~-~lpgRT~~qck~Rw~~ 110 (288)
...||++|-.+..+++..||.+|..|+. .||+||..+|...|..
T Consensus 8 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~ 52 (70)
T 2crg_A 8 MEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYM 52 (70)
T ss_dssp SCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHHh
Confidence 4589999999999999999999999999 5899999999998864
No 80
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.68 E-value=5.1e-05 Score=58.54 Aligned_cols=45 Identities=20% Similarity=0.209 Sum_probs=41.5
Q ss_pred CCCCChHHHHHHHHHHHHhcCchhhhhccCCCCCHHHHHHHHHHh
Q 023056 67 RGNFTDEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTH 111 (288)
Q Consensus 67 rg~WT~eED~~L~~lv~~~G~~W~~IA~~lpgRT~~qck~Rw~~~ 111 (288)
...||+||.++..+....||.+|..||..||+||..+|-..|+..
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~~ 87 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLT 87 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhcc
Confidence 357999999999999999999999999999999999999988653
No 81
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.56 E-value=4.5e-05 Score=74.42 Aligned_cols=49 Identities=20% Similarity=0.367 Sum_probs=43.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCcccccchhcCccchhhhhhhhhhhc
Q 023056 11 HTNKGAWTKEEDQRLIDYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61 (288)
Q Consensus 11 ~~~kg~WT~eED~~L~~~V~~~g~~~W~~Ia~~~~~~Rs~~qcr~Rw~~~L 61 (288)
.....+||.+|-+++++++.+|| .+|..||..+++ ||..||+.+|.++-
T Consensus 377 ~~~~~~WT~eE~~~f~~al~~yG-kdw~~IA~~VgT-KT~~Qvk~fy~~~k 425 (482)
T 2xag_B 377 QKCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIGN-KSVVQVKNFFVNYR 425 (482)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHT-TCHHHHHHHHSS-CCHHHHHHHHHHTT
T ss_pred cccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHhCC-CCHHHHHHHHHHHH
Confidence 34578999999999999999999 579999999998 99999999997653
No 82
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=97.39 E-value=9.2e-05 Score=57.00 Aligned_cols=48 Identities=21% Similarity=0.293 Sum_probs=42.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCcccccchhc----Cccchhhhhhhhhhhc
Q 023056 13 NKGAWTKEEDQRLIDYIRAHGEGCWRSLPKAAG----LLRCGKSCRLRWINYL 61 (288)
Q Consensus 13 ~kg~WT~eED~~L~~~V~~~g~~~W~~Ia~~~~----~~Rs~~qcr~Rw~~~L 61 (288)
..+.||.||++.|++++++|+.. |..|+..+. ..||...++.||..+.
T Consensus 29 ~~~~WTkEETd~Lf~L~~~fdlR-W~vI~DRy~~~~~~~Rt~EdLK~RyY~v~ 80 (93)
T 3hm5_A 29 HDDAWTKAETDHLFDLSRRFDLR-FVVIHDRYDHQQFKKRSVEDLKERYYHIC 80 (93)
T ss_dssp CBTTBCHHHHHHHHHHHHHTTTC-HHHHHHHSCTTTSCCCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCC-eeeehhhhccCCCCCCCHHHHHHHHHHHH
Confidence 34899999999999999999976 999999883 2399999999998754
No 83
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.17 E-value=0.0002 Score=55.14 Aligned_cols=44 Identities=11% Similarity=0.239 Sum_probs=39.9
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCcccccchhcCccchhhhhhhhhh
Q 023056 14 KGAWTKEEDQRLIDYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWIN 59 (288)
Q Consensus 14 kg~WT~eED~~L~~~V~~~g~~~W~~Ia~~~~~~Rs~~qcr~Rw~~ 59 (288)
...||+||.+++.+++..|| ++|..||+.+++ ||..+|...|..
T Consensus 43 ~~~WT~eE~~~F~~~~~~~g-K~F~~Ia~~l~~-Kt~~~cV~~YY~ 86 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHP-KNFGLIASFLER-KTVAECVLYYYL 86 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHST-TCHHHHHHTCTT-CCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcC-CCHHHHHHHcCC-CCHHHHHHHHhc
Confidence 46799999999999999999 569999999998 999999988754
No 84
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.13 E-value=0.00027 Score=51.52 Aligned_cols=44 Identities=9% Similarity=0.099 Sum_probs=39.5
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCcccccc-hhcCccchhhhhhhhhh
Q 023056 14 KGAWTKEEDQRLIDYIRAHGEGCWRSLPK-AAGLLRCGKSCRLRWIN 59 (288)
Q Consensus 14 kg~WT~eED~~L~~~V~~~g~~~W~~Ia~-~~~~~Rs~~qcr~Rw~~ 59 (288)
...||+||-.+..+++..||. +|..|++ .+++ |+..+|..-|..
T Consensus 8 ~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~~-Kt~~~~v~fYY~ 52 (70)
T 2crg_A 8 MEEWSASEACLFEEALEKYGK-DFNDIRQDFLPW-KSLTSIIEYYYM 52 (70)
T ss_dssp SCCCCHHHHHHHHHHHHHTCS-CHHHHHHTTCSS-SCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCc-cHHHHHHHHcCC-CCHHHHHHHHHh
Confidence 568999999999999999995 6999999 5888 999999988764
No 85
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=97.12 E-value=0.00039 Score=52.29 Aligned_cols=49 Identities=14% Similarity=0.373 Sum_probs=40.8
Q ss_pred CCCCChHHHHHHHHHHHHhc----------CchhhhhccC----CCCCHHHHHHHHHHhhhhH
Q 023056 67 RGNFTDEEDELIIKLHSLLG----------NKWSLIAGRL----PGRTDNEIKNYWNTHIKRK 115 (288)
Q Consensus 67 rg~WT~eED~~L~~lv~~~G----------~~W~~IA~~l----pgRT~~qck~Rw~~~l~~~ 115 (288)
...||.+|...||.+...+. ..|..||..| -.||+.||+++|.++.+.-
T Consensus 4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Y 66 (86)
T 2ebi_A 4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEF 66 (86)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 46899999999999997642 2599999987 3799999999999877553
No 86
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=97.08 E-value=0.0001 Score=55.51 Aligned_cols=49 Identities=24% Similarity=0.575 Sum_probs=39.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC---------CCcccccchh---cCccchhhhhhhhhhhc
Q 023056 13 NKGAWTKEEDQRLIDYIRAHGE---------GCWRSLPKAA---GLLRCGKSCRLRWINYL 61 (288)
Q Consensus 13 ~kg~WT~eED~~L~~~V~~~g~---------~~W~~Ia~~~---~~~Rs~~qcr~Rw~~~L 61 (288)
+...||.+|-..|+.+...+.. .-|..||..| |..||+.||+.+|.++.
T Consensus 3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~ 63 (86)
T 2ebi_A 3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLL 63 (86)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 4678999999999999875421 1499999876 45699999999998865
No 87
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=97.01 E-value=0.0015 Score=61.89 Aligned_cols=99 Identities=18% Similarity=0.315 Sum_probs=78.0
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCcccccchhcCccchhhhhhhhhhhc---------------------------------
Q 023056 15 GAWTKEEDQRLIDYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYL--------------------------------- 61 (288)
Q Consensus 15 g~WT~eED~~L~~~V~~~g~~~W~~Ia~~~~~~Rs~~qcr~Rw~~~L--------------------------------- 61 (288)
+.||.-+=..++.+..+||..+-..||..|+++++...++ +|..++
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~-~Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~~~ 202 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVR-AYAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQEA 202 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHH-HHHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHH-HHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5799999999999999999999999999997238877776 332221
Q ss_pred -------------------CCC-CCCCCCChHHHHHHHHHHHHhc----Cchhhhhcc------------CCCCCHHHHH
Q 023056 62 -------------------RPD-LKRGNFTDEEDELIIKLHSLLG----NKWSLIAGR------------LPGRTDNEIK 105 (288)
Q Consensus 62 -------------------~p~-~krg~WT~eED~~L~~lv~~~G----~~W~~IA~~------------lpgRT~~qck 105 (288)
.++ .+...||++||..|+-++.+|| +.|..|-.. +..||+..|.
T Consensus 203 L~~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~ 282 (374)
T 2y9y_A 203 LRRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELA 282 (374)
T ss_dssp HHHHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHH
T ss_pred HHHHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHH
Confidence 011 1345799999999999999998 579999332 3579999999
Q ss_pred HHHHHhhhh
Q 023056 106 NYWNTHIKR 114 (288)
Q Consensus 106 ~Rw~~~l~~ 114 (288)
.|...+|+-
T Consensus 283 rRc~tLi~~ 291 (374)
T 2y9y_A 283 RRGNTLLQC 291 (374)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998853
No 88
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=96.99 E-value=0.00069 Score=58.80 Aligned_cols=45 Identities=18% Similarity=0.285 Sum_probs=35.7
Q ss_pred CCChHHHHHHHHHHHHhc-Cchhhhhcc--C------------CCCCHHHHHHHHHHhhh
Q 023056 69 NFTDEEDELIIKLHSLLG-NKWSLIAGR--L------------PGRTDNEIKNYWNTHIK 113 (288)
Q Consensus 69 ~WT~eED~~L~~lv~~~G-~~W~~IA~~--l------------pgRT~~qck~Rw~~~l~ 113 (288)
.||.+||..|+..+.+|| ++|..|-.. | ..+++..+..|-..+|+
T Consensus 136 ~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~~l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~ 195 (211)
T 4b4c_A 136 DWGKEDDSNLLIGIYEYGYGSWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRADYLIK 195 (211)
T ss_dssp CCCHHHHHHHHHHHHHHCTTCHHHHHHCSSSSCTTTSSCSSTTSSCCHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCcCcHHHHHhChhcCccccccccccccCCChHHHHHHHHHHHH
Confidence 599999999999999999 999999542 1 12456788888776664
No 89
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=95.37 E-value=0.00056 Score=49.38 Aligned_cols=45 Identities=13% Similarity=0.251 Sum_probs=39.9
Q ss_pred CCCCHHHHHHHHHHHHHhCCC--CcccccchhcCccchhhhhhhhhhhc
Q 023056 15 GAWTKEEDQRLIDYIRAHGEG--CWRSLPKAAGLLRCGKSCRLRWINYL 61 (288)
Q Consensus 15 g~WT~eED~~L~~~V~~~g~~--~W~~Ia~~~~~~Rs~~qcr~Rw~~~L 61 (288)
-.||.|||..|+...++-|.. -|..||..+ + |++.|+.+||...+
T Consensus 15 vlWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-n-ks~~QV~~RF~~Lm 61 (70)
T 2lr8_A 15 ILWTRNDDRVILLECQKRGPSSKTFAYLAAKL-D-KNPNQVSERFQQLM 61 (70)
Confidence 479999999999999999862 599999999 4 99999999998765
No 90
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.32 E-value=0.0031 Score=48.00 Aligned_cols=46 Identities=15% Similarity=0.366 Sum_probs=40.8
Q ss_pred CCCCHHHHHHHHHHHHHhCC--CCcccccchhcCccchhhhhhhhhhhc
Q 023056 15 GAWTKEEDQRLIDYIRAHGE--GCWRSLPKAAGLLRCGKSCRLRWINYL 61 (288)
Q Consensus 15 g~WT~eED~~L~~~V~~~g~--~~W~~Ia~~~~~~Rs~~qcr~Rw~~~L 61 (288)
-.||.|||..|+...++.|. ..|..||+.++. |+..|+.+||..++
T Consensus 34 vlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~N-ks~nqV~~RFq~Lm 81 (95)
T 1ug2_A 34 VLWTREADRVILTMCQEQGAQPHTFSVISQQLGN-KTPVEVSHRFRELM 81 (95)
T ss_dssp SSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSS-CCHHHHHHHHHHHH
T ss_pred EEeccccCHHHHHHHHhcCCChhHHHHHHHHHcc-CCHHHHHHHHHHHH
Confidence 47999999999999999986 359999999987 99999999998643
No 91
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=94.99 E-value=0.017 Score=44.27 Aligned_cols=49 Identities=20% Similarity=0.279 Sum_probs=41.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCcccccchhc----Cccchhhhhhhhhhhc
Q 023056 12 TNKGAWTKEEDQRLIDYIRAHGEGCWRSLPKAAG----LLRCGKSCRLRWINYL 61 (288)
Q Consensus 12 ~~kg~WT~eED~~L~~~V~~~g~~~W~~Ia~~~~----~~Rs~~qcr~Rw~~~L 61 (288)
+....||.||.+.|++++++|... |--|+.... ..|+..+..+||..+.
T Consensus 28 L~~~~WT~eETd~LfdLc~~fdlR-w~vI~DRy~~~~~~~RtvEdLK~RYY~V~ 80 (93)
T 4iej_A 28 LHDDAWTKAETDHLFDLSRRFDLR-FVVIHDRYDHQQFKKRSVEDLKERYYHIC 80 (93)
T ss_dssp TCBTTBCHHHHHHHHHHHHHTTTC-HHHHHHHCCTTTSCCCCHHHHHHHHHHHH
T ss_pred hCCCCCCHHHHHHHHHHHHHcCCC-eEEEeeccccCCCCCCCHHHHHHHHHHHH
Confidence 344689999999999999999976 999998764 2499999999998764
No 92
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=94.85 E-value=0.024 Score=48.95 Aligned_cols=39 Identities=33% Similarity=0.551 Sum_probs=31.9
Q ss_pred CCcCcCCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccc
Q 023056 4 SPCCEKAHTNKGAWTKEEDQRLIDYIRAHGEGCWRSLPK 42 (288)
Q Consensus 4 ~~~~~K~~~~kg~WT~eED~~L~~~V~~~g~~~W~~Ia~ 42 (288)
-|+..++......||.+||..|+..|.+||.++|..|-.
T Consensus 124 i~~~~~~~~~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~ 162 (211)
T 4b4c_A 124 IPCHTKAAHFDIDWGKEDDSNLLIGIYEYGYGSWEMIKM 162 (211)
T ss_dssp CCSCCCCCCSSSCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cCCCCCCCCCCCCccHHHHHHHHHHHHHHCcCcHHHHHh
Confidence 345555555566799999999999999999999999864
No 93
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=94.73 E-value=0.059 Score=38.42 Aligned_cols=48 Identities=15% Similarity=0.045 Sum_probs=40.3
Q ss_pred CCCCCCChHHHHHHHHHHHHhcCc---hhhhhccC--CCCCHHHHHHHHHHhh
Q 023056 65 LKRGNFTDEEDELIIKLHSLLGNK---WSLIAGRL--PGRTDNEIKNYWNTHI 112 (288)
Q Consensus 65 ~krg~WT~eED~~L~~lv~~~G~~---W~~IA~~l--pgRT~~qck~Rw~~~l 112 (288)
..+-.||+|..+..+++|..+|.. |..|.+.| +|.|..+|+.+...+-
T Consensus 5 k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR 57 (64)
T 1irz_A 5 KPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFR 57 (64)
T ss_dssp CSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 346689999999999999999954 78898876 7999999999876543
No 94
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=93.73 E-value=0.1 Score=48.01 Aligned_cols=43 Identities=23% Similarity=0.303 Sum_probs=39.4
Q ss_pred CCCCChHHHHHHHHHHHHhc-CchhhhhccCCCCCHHHHHHHHH
Q 023056 67 RGNFTDEEDELIIKLHSLLG-NKWSLIAGRLPGRTDNEIKNYWN 109 (288)
Q Consensus 67 rg~WT~eED~~L~~lv~~~G-~~W~~IA~~lpgRT~~qck~Rw~ 109 (288)
-+.||..|...++.++.+|| .+|..||..|+|+|...|+.++.
T Consensus 110 F~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~ 153 (304)
T 1ofc_X 110 FTAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNA 153 (304)
T ss_dssp CTTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHH
T ss_pred hcccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 35799999999999999999 78999999999999999987664
No 95
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=90.82 E-value=0.21 Score=45.30 Aligned_cols=28 Identities=36% Similarity=0.712 Sum_probs=25.9
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCcccccc
Q 023056 15 GAWTKEEDQRLIDYIRAHGEGCWRSLPK 42 (288)
Q Consensus 15 g~WT~eED~~L~~~V~~~g~~~W~~Ia~ 42 (288)
..|+.+||..|+..|.+||.++|..|..
T Consensus 169 c~W~~~dD~~LLvGIykyGyG~We~Ir~ 196 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGYGSWTQIRD 196 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence 5699999999999999999999999953
No 96
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=89.48 E-value=0.21 Score=45.30 Aligned_cols=27 Identities=33% Similarity=0.500 Sum_probs=24.6
Q ss_pred CCChHHHHHHHHHHHHhc-Cchhhhhcc
Q 023056 69 NFTDEEDELIIKLHSLLG-NKWSLIAGR 95 (288)
Q Consensus 69 ~WT~eED~~L~~lv~~~G-~~W~~IA~~ 95 (288)
.|+.+||..|+..|.+|| +.|..|...
T Consensus 170 ~W~~~dD~~LLvGIykyGyG~We~Ir~D 197 (270)
T 2xb0_X 170 NWTKEEDEKLLIGVFKYGYGSWTQIRDD 197 (270)
T ss_dssp CCCHHHHHHHHHHHHHHCTTCHHHHHHC
T ss_pred CcChHHHHHHHHHHHHHcCCcHHHHhcC
Confidence 599999999999999999 999999543
No 97
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=89.34 E-value=0.4 Score=34.08 Aligned_cols=50 Identities=8% Similarity=0.154 Sum_probs=37.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCC--CcccccchhcC-ccchhhhhhhhhhh
Q 023056 11 HTNKGAWTKEEDQRLIDYIRAHGEG--CWRSLPKAAGL-LRCGKSCRLRWINY 60 (288)
Q Consensus 11 ~~~kg~WT~eED~~L~~~V~~~g~~--~W~~Ia~~~~~-~Rs~~qcr~Rw~~~ 60 (288)
...+-.||+|..++.+.+|...|.. -++.|.+.|+- +.|..++..|...|
T Consensus 4 ~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKY 56 (64)
T 1irz_A 4 KKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKF 56 (64)
T ss_dssp CCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred CCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 3457789999999999999999943 16788888763 15777777665543
No 98
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=74.22 E-value=0.67 Score=43.51 Aligned_cols=15 Identities=27% Similarity=0.045 Sum_probs=6.4
Q ss_pred CCCHHHHHHHHHHHH
Q 023056 16 AWTKEEDQRLIDYIR 30 (288)
Q Consensus 16 ~WT~eED~~L~~~V~ 30 (288)
+||=+|=..+.+.+.
T Consensus 126 P~Twdel~~~a~~l~ 140 (449)
T 3iot_A 126 PKTWEEIPALDKELK 140 (449)
T ss_dssp CSBGGGHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 445444444433333
No 99
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=64.35 E-value=4.3 Score=33.95 Aligned_cols=27 Identities=26% Similarity=0.623 Sum_probs=21.0
Q ss_pred CCCCCCCHHHHHHHH--------HHHHHhCCCCccccc
Q 023056 12 TNKGAWTKEEDQRLI--------DYIRAHGEGCWRSLP 41 (288)
Q Consensus 12 ~~kg~WT~eED~~L~--------~~V~~~g~~~W~~Ia 41 (288)
--.|-||+|+|+.|. +++++|| |..|.
T Consensus 112 N~pGIWT~eDDe~L~s~d~~dikrL~kKHG---~erie 146 (168)
T 3cz6_A 112 NVPGIWTHDDDESLKSNDQEQIRKLVKKHG---TGRME 146 (168)
T ss_dssp TCTTCCCHHHHHHHHSCCHHHHHHHHHHHC---HHHHH
T ss_pred CCCCCCChhhHHHHHcCCHHHHHHHHHHhC---HHHHH
Confidence 347899999999987 6788887 55554
No 100
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=59.70 E-value=3.7 Score=32.55 Aligned_cols=45 Identities=16% Similarity=0.189 Sum_probs=33.7
Q ss_pred CcccccchhcCccc----hhhhhhhhhhhcCCCCCCCCCChHHHHHHHHHHH
Q 023056 36 CWRSLPKAAGLLRC----GKSCRLRWINYLRPDLKRGNFTDEEDELIIKLHS 83 (288)
Q Consensus 36 ~W~~Ia~~~~~~Rs----~~qcr~Rw~~~L~p~~krg~WT~eED~~L~~lv~ 83 (288)
-|..||..|+...+ +...+..|.++|.|- ..++++|-..|..-|.
T Consensus 65 ~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~Y---E~~~~~e~~~l~~~v~ 113 (121)
T 2rq5_A 65 KWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSY---DSLSPEEHRRLEKEVL 113 (121)
T ss_dssp CHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHH---HHCCHHHHHHHHHHHH
T ss_pred cHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHH---HCcCHHHHhhHHHHHH
Confidence 49999999986543 356788899988652 2488899888877664
No 101
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=56.97 E-value=60 Score=24.44 Aligned_cols=86 Identities=13% Similarity=0.115 Sum_probs=50.5
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCcccccchhcCccchhhhhhhhhhhcCC------CCCCCCCChHHHHHHHHHHHHhc-C
Q 023056 15 GAWTKEEDQRLIDYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRP------DLKRGNFTDEEDELIIKLHSLLG-N 87 (288)
Q Consensus 15 g~WT~eED~~L~~~V~~~g~~~W~~Ia~~~~~~Rs~~qcr~Rw~~~L~p------~~krg~WT~eED~~L~~lv~~~G-~ 87 (288)
...|.++-..++.++. -|. .-..||+.++ .+...++ ||.+.... .......+++++..|+.+ ...+ -
T Consensus 5 ~~~s~~~r~~i~~~~~-~G~-s~~~ia~~lg--is~~Tv~-r~~~~~~~~g~~~~~gr~~~l~~~~~~~i~~~-~~~~~~ 78 (141)
T 1u78_A 5 SALSDTERAQLDVMKL-LNV-SLHEMSRKIS--RSRHCIR-VYLKDPVSYGTSKRAPRRKALSVRDERNVIRA-ASNSCK 78 (141)
T ss_dssp CCCCHHHHHHHHHHHH-TTC-CHHHHHHHHT--CCHHHHH-HHHHSGGGTTCCCCCCCCCSSCHHHHHHHHHH-HHHCCC
T ss_pred ccCCHHHHHHHHHHHH-cCC-CHHHHHHHHC--cCHHHHH-HHHHcccccCCcCCCCCCCcCCHHHHHHHHHH-HhCCCC
Confidence 3578888888887763 453 4789999998 4444443 33332211 112235788888888877 3322 2
Q ss_pred chhhhhccCCC--CCHHHHHHH
Q 023056 88 KWSLIAGRLPG--RTDNEIKNY 107 (288)
Q Consensus 88 ~W~~IA~~lpg--RT~~qck~R 107 (288)
.-..|+..| | -+...|...
T Consensus 79 s~~~i~~~l-g~~~s~~tV~r~ 99 (141)
T 1u78_A 79 TARDIRNEL-QLSASKRTILNV 99 (141)
T ss_dssp CHHHHHHHT-TCCSCHHHHHHH
T ss_pred CHHHHHHHH-CCCccHHHHHHH
Confidence 234677776 4 455555543
No 102
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=56.66 E-value=4.1 Score=31.75 Aligned_cols=39 Identities=13% Similarity=0.207 Sum_probs=30.4
Q ss_pred HHHHHHHHhCC-------CCcccccchhcCccchhhhhhhhhhhcCC
Q 023056 24 RLIDYIRAHGE-------GCWRSLPKAAGLLRCGKSCRLRWINYLRP 63 (288)
Q Consensus 24 ~L~~~V~~~g~-------~~W~~Ia~~~~~~Rs~~qcr~Rw~~~L~p 63 (288)
+|..+|.+.|. +.|..||..|+. -.+...+..|.++|.|
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~-~~~~~Lr~~Y~k~L~~ 98 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQI-SDYQQLESIYFRILLP 98 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTS-CCTTHHHHHHHHHHSH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCC-ChHHHHHHHHHHHHHH
Confidence 56777777763 359999999998 4478889999988854
No 103
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=55.69 E-value=20 Score=33.78 Aligned_cols=41 Identities=29% Similarity=0.381 Sum_probs=36.8
Q ss_pred CCCChHHHHHHHHHHHHhc-CchhhhhccCC-CCCHHHHHHHH
Q 023056 68 GNFTDEEDELIIKLHSLLG-NKWSLIAGRLP-GRTDNEIKNYW 108 (288)
Q Consensus 68 g~WT~eED~~L~~lv~~~G-~~W~~IA~~lp-gRT~~qck~Rw 108 (288)
+.||.-|=..++.+..+|| .+-..||..|. |+|...|+.+.
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~ 166 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYA 166 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHH
Confidence 5799999999999999999 67999999996 99999999654
No 104
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=50.60 E-value=16 Score=24.36 Aligned_cols=41 Identities=20% Similarity=0.183 Sum_probs=31.1
Q ss_pred CChHHHHHHHHHHHHhcCchhhhhccCCCCCHHHHHHHHHHhh
Q 023056 70 FTDEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHI 112 (288)
Q Consensus 70 WT~eED~~L~~lv~~~G~~W~~IA~~lpgRT~~qck~Rw~~~l 112 (288)
++ +.+..++.++-..|-.+..||..| |-+...++.+....+
T Consensus 16 L~-~~~r~il~l~~~~g~s~~eIA~~l-gis~~tv~~~~~ra~ 56 (70)
T 2o8x_A 16 LT-TDQREALLLTQLLGLSYADAAAVC-GCPVGTIRSRVARAR 56 (70)
T ss_dssp SC-HHHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHH
T ss_pred CC-HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHH
Confidence 44 445556666667788999999999 889999988776544
No 105
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=50.27 E-value=13 Score=31.08 Aligned_cols=17 Identities=29% Similarity=0.470 Sum_probs=14.8
Q ss_pred CCCCCCCCChHHHHHHH
Q 023056 63 PDLKRGNFTDEEDELII 79 (288)
Q Consensus 63 p~~krg~WT~eED~~L~ 79 (288)
|....|-||.++|+.|.
T Consensus 110 P~N~pGIWT~eDDe~L~ 126 (168)
T 3cz6_A 110 PPNVPGIWTHDDDESLK 126 (168)
T ss_dssp CTTCTTCCCHHHHHHHH
T ss_pred CCCCCCCCChhhHHHHH
Confidence 56779999999999886
No 106
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=47.47 E-value=6.7 Score=30.60 Aligned_cols=40 Identities=15% Similarity=0.262 Sum_probs=29.1
Q ss_pred HHHHHHHHhCC-------CCcccccchhcCccc---hhhhhhhhhhhcCC
Q 023056 24 RLIDYIRAHGE-------GCWRSLPKAAGLLRC---GKSCRLRWINYLRP 63 (288)
Q Consensus 24 ~L~~~V~~~g~-------~~W~~Ia~~~~~~Rs---~~qcr~Rw~~~L~p 63 (288)
+|..+|.+.|- +.|..||..|+...+ +...+..|.++|.|
T Consensus 44 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~ 93 (117)
T 2jrz_A 44 SLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYP 93 (117)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 57778887763 359999999987432 45678888888753
No 107
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=47.24 E-value=8 Score=29.49 Aligned_cols=40 Identities=13% Similarity=0.258 Sum_probs=29.2
Q ss_pred HHHHHHHHhCC-------CCcccccchhcCcc----chhhhhhhhhhhcCC
Q 023056 24 RLIDYIRAHGE-------GCWRSLPKAAGLLR----CGKSCRLRWINYLRP 63 (288)
Q Consensus 24 ~L~~~V~~~g~-------~~W~~Ia~~~~~~R----s~~qcr~Rw~~~L~p 63 (288)
+|..+|.+.|- +.|..||..|+... .+...+..|.++|.|
T Consensus 37 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~ 87 (107)
T 1ig6_A 37 TMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILP 87 (107)
T ss_dssp HHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTT
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 56677777752 35999999998643 246778889888865
No 108
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=47.13 E-value=20 Score=24.62 Aligned_cols=40 Identities=15% Similarity=0.302 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHH----hcCchhhhhccCCCCCHHHHHHHHHHhhh
Q 023056 73 EEDELIIKLHSL----LGNKWSLIAGRLPGRTDNEIKNYWNTHIK 113 (288)
Q Consensus 73 eED~~L~~lv~~----~G~~W~~IA~~lpgRT~~qck~Rw~~~l~ 113 (288)
+.+..++.+.-. .|-.|..||..| |-|...|+.+....++
T Consensus 13 ~~er~il~l~~~l~~~~~~s~~eIA~~l-~is~~tV~~~~~ra~~ 56 (73)
T 1ku3_A 13 EREAMVLKMRKGLIDGREHTLEEVGAYF-GVTRERIRQIENKALR 56 (73)
T ss_dssp HHHHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCCHHHHHHHH-CCCHHHHHHHHHHHHH
Confidence 344455555554 567899999999 9999999987766553
No 109
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=45.49 E-value=26 Score=26.46 Aligned_cols=38 Identities=16% Similarity=0.342 Sum_probs=27.0
Q ss_pred HHHHHHHHhc--------CchhhhhccCCCC-C---HHHHHHHHHHhhhh
Q 023056 77 LIIKLHSLLG--------NKWSLIAGRLPGR-T---DNEIKNYWNTHIKR 114 (288)
Q Consensus 77 ~L~~lv~~~G--------~~W~~IA~~lpgR-T---~~qck~Rw~~~l~~ 114 (288)
+|..+|...| +.|..||..|.-- + +..++..|..+|.+
T Consensus 48 ~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~ 97 (107)
T 2lm1_A 48 TLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILHP 97 (107)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 4666677666 3699999998221 2 46889989887765
No 110
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=45.33 E-value=7.5 Score=30.73 Aligned_cols=40 Identities=25% Similarity=0.490 Sum_probs=29.0
Q ss_pred HHHHHHHHhCC-------CCcccccchhcCccc----hhhhhhhhhhhcCC
Q 023056 24 RLIDYIRAHGE-------GCWRSLPKAAGLLRC----GKSCRLRWINYLRP 63 (288)
Q Consensus 24 ~L~~~V~~~g~-------~~W~~Ia~~~~~~Rs----~~qcr~Rw~~~L~p 63 (288)
+|..+|.+.|. +.|..||..|+...+ +...+..|.++|.|
T Consensus 56 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~ 106 (128)
T 1c20_A 56 ELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYP 106 (128)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 56677777763 359999999986433 46678888888754
No 111
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=44.96 E-value=23 Score=27.40 Aligned_cols=38 Identities=16% Similarity=0.274 Sum_probs=27.6
Q ss_pred HHHHHHHHhcC--------chhhhhccCCCC----CHHHHHHHHHHhhhh
Q 023056 77 LIIKLHSLLGN--------KWSLIAGRLPGR----TDNEIKNYWNTHIKR 114 (288)
Q Consensus 77 ~L~~lv~~~G~--------~W~~IA~~lpgR----T~~qck~Rw~~~l~~ 114 (288)
+|..+|...|| .|..|+..|.-- .+..++..|..+|.+
T Consensus 44 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~ 93 (117)
T 2jrz_A 44 SLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYP 93 (117)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 47777777773 699999998211 156789999887765
No 112
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=41.79 E-value=8.4 Score=29.30 Aligned_cols=41 Identities=15% Similarity=0.321 Sum_probs=28.5
Q ss_pred HHHHHHHHHhCC-------CCcccccchhcCccc---hhhhhhhhhhhcCC
Q 023056 23 QRLIDYIRAHGE-------GCWRSLPKAAGLLRC---GKSCRLRWINYLRP 63 (288)
Q Consensus 23 ~~L~~~V~~~g~-------~~W~~Ia~~~~~~Rs---~~qcr~Rw~~~L~p 63 (288)
-+|..+|.+.|. +.|..||..|+...+ +...+..|.++|.|
T Consensus 47 ~~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~ 97 (107)
T 2lm1_A 47 YTLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILHP 97 (107)
T ss_dssp HHHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 356777777763 359999999986432 46677788777643
No 113
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=41.71 E-value=9.2 Score=30.11 Aligned_cols=40 Identities=25% Similarity=0.425 Sum_probs=28.1
Q ss_pred HHHHHHHHhCC-------CCcccccchhcCccc---hhhhhhhhhhhcCC
Q 023056 24 RLIDYIRAHGE-------GCWRSLPKAAGLLRC---GKSCRLRWINYLRP 63 (288)
Q Consensus 24 ~L~~~V~~~g~-------~~W~~Ia~~~~~~Rs---~~qcr~Rw~~~L~p 63 (288)
+|..+|.+.|- +.|..||..|+...+ +...+..|.++|.|
T Consensus 55 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~ 104 (125)
T 2cxy_A 55 RLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFA 104 (125)
T ss_dssp HHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 56677777763 359999999987442 45677788887743
No 114
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=39.85 E-value=32 Score=26.84 Aligned_cols=38 Identities=21% Similarity=0.379 Sum_probs=27.0
Q ss_pred HHHHHHHHhcC--------chhhhhccC--CCCC--HHHHHHHHHHhhhh
Q 023056 77 LIIKLHSLLGN--------KWSLIAGRL--PGRT--DNEIKNYWNTHIKR 114 (288)
Q Consensus 77 ~L~~lv~~~G~--------~W~~IA~~l--pgRT--~~qck~Rw~~~l~~ 114 (288)
+|..+|...|+ .|..|+..| +.-+ +..+|..|..+|.+
T Consensus 46 ~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~ 95 (122)
T 2eqy_A 46 QLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNP 95 (122)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 46677777763 699999998 2212 46788888887755
No 115
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=39.53 E-value=19 Score=29.01 Aligned_cols=46 Identities=11% Similarity=0.065 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHhc-CchhhhhccCCCCCHHHHHHHHHHhhhhHhhcC
Q 023056 73 EEDELIIKLHSLLG-NKWSLIAGRLPGRTDNEIKNYWNTHIKRKLLNR 119 (288)
Q Consensus 73 eED~~L~~lv~~~G-~~W~~IA~~lpgRT~~qck~Rw~~~l~~~~~~~ 119 (288)
+-|.+|+.+....| -.|..||+.+ |-|...|+.|+..+....+..+
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~l-g~s~~tv~~rl~~L~~~g~i~~ 49 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKV-GLSTTPCWRRIQKMEEDGVIRR 49 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHH-TCCHHHHHHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCeee
Confidence 56788888888777 6799999999 9999999999999888777653
No 116
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=39.48 E-value=14 Score=28.62 Aligned_cols=38 Identities=18% Similarity=0.361 Sum_probs=28.6
Q ss_pred HHHHHHHHhcC--------chhhhhccCCCCCHHHHHHHHHHhhhh
Q 023056 77 LIIKLHSLLGN--------KWSLIAGRLPGRTDNEIKNYWNTHIKR 114 (288)
Q Consensus 77 ~L~~lv~~~G~--------~W~~IA~~lpgRT~~qck~Rw~~~l~~ 114 (288)
+|..+|...|| .|..||..|.--.+..++..|..+|.+
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~Lr~~Y~k~L~~ 98 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLP 98 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCCTTHHHHHHHHHHSH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 47777777763 699999998333378899999888755
No 117
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=39.44 E-value=33 Score=26.82 Aligned_cols=38 Identities=16% Similarity=0.232 Sum_probs=27.2
Q ss_pred HHHHHHHHhcC--------chhhhhccC--CC--CCHHHHHHHHHHhhhh
Q 023056 77 LIIKLHSLLGN--------KWSLIAGRL--PG--RTDNEIKNYWNTHIKR 114 (288)
Q Consensus 77 ~L~~lv~~~G~--------~W~~IA~~l--pg--RT~~qck~Rw~~~l~~ 114 (288)
+|..+|...|+ .|..||..| +. -.+..+|..|..+|.+
T Consensus 55 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~ 104 (125)
T 2cxy_A 55 RLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFA 104 (125)
T ss_dssp HHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 46677777663 699999998 22 1246889999888765
No 118
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=39.16 E-value=24 Score=23.83 Aligned_cols=39 Identities=5% Similarity=0.138 Sum_probs=28.4
Q ss_pred HHHHHHHHHH----HhcCchhhhhccCCCCCHHHHHHHHHHhhh
Q 023056 74 EDELIIKLHS----LLGNKWSLIAGRLPGRTDNEIKNYWNTHIK 113 (288)
Q Consensus 74 ED~~L~~lv~----~~G~~W~~IA~~lpgRT~~qck~Rw~~~l~ 113 (288)
.+..++.+.- ..|-.+..||..| |-|...|+.+....++
T Consensus 9 ~er~il~l~~~l~~~~g~s~~eIA~~l-gis~~tV~~~~~ra~~ 51 (68)
T 2p7v_B 9 REAKVLRMRFGIDMNTDYTLEEVGKQF-DVTRERIRQIEAKALR 51 (68)
T ss_dssp HHHHHHHHHTTTTSSSCCCHHHHHHHH-TCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 3444444444 2467899999999 9999999998776553
No 119
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=37.80 E-value=36 Score=26.68 Aligned_cols=38 Identities=16% Similarity=0.241 Sum_probs=28.6
Q ss_pred HHHHHHHHhcC--------chhhhhccC--CCC---CHHHHHHHHHHhhhh
Q 023056 77 LIIKLHSLLGN--------KWSLIAGRL--PGR---TDNEIKNYWNTHIKR 114 (288)
Q Consensus 77 ~L~~lv~~~G~--------~W~~IA~~l--pgR---T~~qck~Rw~~~l~~ 114 (288)
+|..+|...|| .|..||..| +.. .+..+|..|..+|.+
T Consensus 56 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~ 106 (128)
T 1c20_A 56 ELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYP 106 (128)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 56777777773 699999998 322 267899999988876
No 120
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=37.40 E-value=14 Score=29.89 Aligned_cols=52 Identities=27% Similarity=0.399 Sum_probs=33.8
Q ss_pred HHHHHHHHhCC-------CCcccccchhcCccc----hhhhhhhhhhhcCC--CCCCCCCChHHH
Q 023056 24 RLIDYIRAHGE-------GCWRSLPKAAGLLRC----GKSCRLRWINYLRP--DLKRGNFTDEED 75 (288)
Q Consensus 24 ~L~~~V~~~g~-------~~W~~Ia~~~~~~Rs----~~qcr~Rw~~~L~p--~~krg~WT~eED 75 (288)
+|..+|.+.|- +.|..||..|+...+ +...+..|.++|.| ...+|.=+++|-
T Consensus 68 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~yE~~~~g~~~p~~~ 132 (145)
T 2kk0_A 68 MLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPYECEKRGLSNPNEL 132 (145)
T ss_dssp HHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSHHHHHHTCCCCHHHH
T ss_pred HHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 46667777763 359999999986432 46778889888866 223444444443
No 121
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=36.88 E-value=9.7 Score=29.88 Aligned_cols=39 Identities=18% Similarity=0.347 Sum_probs=27.5
Q ss_pred HHHHHHHHhCC-------CCcccccchhcCccc---hhhhhhhhhhhcC
Q 023056 24 RLIDYIRAHGE-------GCWRSLPKAAGLLRC---GKSCRLRWINYLR 62 (288)
Q Consensus 24 ~L~~~V~~~g~-------~~W~~Ia~~~~~~Rs---~~qcr~Rw~~~L~ 62 (288)
+|..+|.+.|- +.|..||..|+...+ +...+..|.++|.
T Consensus 46 ~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~ 94 (122)
T 2eqy_A 46 QLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILN 94 (122)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhH
Confidence 56777877763 359999999987432 3566777777764
No 122
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=36.64 E-value=21 Score=28.05 Aligned_cols=38 Identities=18% Similarity=0.343 Sum_probs=27.8
Q ss_pred HHHHHHHhcC--------chhhhhccCCCCCHHHHHHHHHHhhhhH
Q 023056 78 IIKLHSLLGN--------KWSLIAGRLPGRTDNEIKNYWNTHIKRK 115 (288)
Q Consensus 78 L~~lv~~~G~--------~W~~IA~~lpgRT~~qck~Rw~~~l~~~ 115 (288)
|..+|...|+ .|..|+..|.--.+..++..|..+|.+-
T Consensus 53 Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~Lr~~Y~k~L~~y 98 (123)
T 1kkx_A 53 LYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPY 98 (123)
T ss_dssp HHHHHTTTSCHHHHTTSHHHHHHHHHHTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHhccccccHHHHHHHHCCChHHHHHHHHHHHHHHH
Confidence 5666666653 5999999983333899999999888653
No 123
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=36.51 E-value=1.4e+02 Score=22.81 Aligned_cols=67 Identities=10% Similarity=0.074 Sum_probs=42.4
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCcccccchhcCccchhhhhhhhhhh------cCCCCC----CCCCChHHHHHHHHHHH
Q 023056 14 KGAWTKEEDQRLIDYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINY------LRPDLK----RGNFTDEEDELIIKLHS 83 (288)
Q Consensus 14 kg~WT~eED~~L~~~V~~~g~~~W~~Ia~~~~~~Rs~~qcr~Rw~~~------L~p~~k----rg~WT~eED~~L~~lv~ 83 (288)
....|.++-..++.++. .|. ....||+.++ .+...++ ||.+. +.+... ....++++.+.|++++.
T Consensus 30 ~~~~s~e~r~~iv~~~~-~G~-s~~~iA~~lg--is~~TV~-rw~~~~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~ 104 (149)
T 1k78_A 30 GRPLPDVVRQRIVELAH-QGV-RPCDISRQLR--VSHGCVS-KILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKR 104 (149)
T ss_dssp TSCCCHHHHHHHHHHHH-TTC-CHHHHHHHHT--CCHHHHH-HHHHHHHHHSCCCCCCCCCCCCSSSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH-cCC-CHHHHHHHHC--cCHHHHH-HHHHHHHHcCCCCccCCCCCCCCCCCHHHHHHHHHHHH
Confidence 34689998888888874 453 4789999998 4443333 34332 222222 23478888888888876
Q ss_pred Hh
Q 023056 84 LL 85 (288)
Q Consensus 84 ~~ 85 (288)
..
T Consensus 105 ~~ 106 (149)
T 1k78_A 105 QN 106 (149)
T ss_dssp HC
T ss_pred hC
Confidence 54
No 124
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=34.87 E-value=35 Score=27.45 Aligned_cols=39 Identities=15% Similarity=0.255 Sum_probs=28.4
Q ss_pred HHHHHHHHhcC--------chhhhhccC--CCC---CHHHHHHHHHHhhhhH
Q 023056 77 LIIKLHSLLGN--------KWSLIAGRL--PGR---TDNEIKNYWNTHIKRK 115 (288)
Q Consensus 77 ~L~~lv~~~G~--------~W~~IA~~l--pgR---T~~qck~Rw~~~l~~~ 115 (288)
+|..+|...|+ .|..|+..| +.. .+..++..|..+|.+-
T Consensus 68 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~y 119 (145)
T 2kk0_A 68 MLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPY 119 (145)
T ss_dssp HHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSHH
T ss_pred HHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHHH
Confidence 46677777763 699999998 332 2578999999888653
No 125
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=32.83 E-value=1.7e+02 Score=22.68 Aligned_cols=67 Identities=13% Similarity=0.062 Sum_probs=42.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCcccccchhcCccchhhhhhhhhhhc------CCCCC----CCCCChHHHHHHHHHHH
Q 023056 14 KGAWTKEEDQRLIDYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYL------RPDLK----RGNFTDEEDELIIKLHS 83 (288)
Q Consensus 14 kg~WT~eED~~L~~~V~~~g~~~W~~Ia~~~~~~Rs~~qcr~Rw~~~L------~p~~k----rg~WT~eED~~L~~lv~ 83 (288)
....|.++-..++.++. .|. ....||+.++ .+...++ ||.+.. .+... ....++++.+.|++++.
T Consensus 23 ~~~~s~e~r~~ii~l~~-~G~-s~~~IA~~lg--is~~TV~-rwl~r~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~ 97 (159)
T 2k27_A 23 GRPLPEVVRQRIVDLAH-QGV-RPCDISRQLR--VSHGCVS-KILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKR 97 (159)
T ss_dssp SCSSCHHHHHHHHHHHH-HTC-CHHHHHHHHT--CCSHHHH-HHHCCSSTTSCCCCCCCCCCCCCCCCTTHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH-cCC-CHHHHHHHHC--cCHHHHH-HHHHHHHhcCCccCCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 34688998888888874 453 4789999988 3433333 444332 22211 23578888888888876
Q ss_pred Hh
Q 023056 84 LL 85 (288)
Q Consensus 84 ~~ 85 (288)
..
T Consensus 98 ~~ 99 (159)
T 2k27_A 98 QN 99 (159)
T ss_dssp HC
T ss_pred HC
Confidence 54
No 126
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=31.44 E-value=5.7 Score=31.40 Aligned_cols=27 Identities=11% Similarity=0.219 Sum_probs=20.1
Q ss_pred CcccccchhcCccchhhhhhhhhhhcCC
Q 023056 36 CWRSLPKAAGLLRCGKSCRLRWINYLRP 63 (288)
Q Consensus 36 ~W~~Ia~~~~~~Rs~~qcr~Rw~~~L~p 63 (288)
.|..||..|+... +...+..|.++|.|
T Consensus 71 ~W~~Va~~lg~~~-~~~Lr~~Y~k~L~~ 97 (123)
T 1kkx_A 71 QWSMVAQRLQISD-YQQLESIYFRILLP 97 (123)
T ss_dssp HHHHHHHHHTCCC-HHHHHHHHHHHHHH
T ss_pred cHHHHHHHHCCCh-HHHHHHHHHHHHHH
Confidence 3999999988733 77778888777643
No 127
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=31.40 E-value=39 Score=26.50 Aligned_cols=93 Identities=19% Similarity=0.270 Sum_probs=55.2
Q ss_pred CCCCCCCCHHHH--HHHHHHHHHhCCCCcccccchhcCccchhhhhhhhhhhcCCCCCCCCCChHHHHHHHHHHHHhcC-
Q 023056 11 HTNKGAWTKEED--QRLIDYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTDEEDELIIKLHSLLGN- 87 (288)
Q Consensus 11 ~~~kg~WT~eED--~~L~~~V~~~g~~~W~~Ia~~~~~~Rs~~qcr~Rw~~~L~p~~krg~WT~eED~~L~~lv~~~G~- 87 (288)
|.=+.+|.+.+. +.|.......|.. ...|+.. ++ |.-. =-+|..+|...|+
T Consensus 4 ~~~~~r~~~~~~Fl~~L~~F~~~rGtp-l~~~P~i-~g-k~lD-----------------------L~~Ly~~V~~~GG~ 57 (121)
T 2rq5_A 4 GSLGRRWGPNVQRLACIKKHLRSQGIT-MDELPLI-GG-CELD-----------------------LACFFRLINEMGGM 57 (121)
T ss_dssp CCCSSCCCHHHHHHHHHHHHHHHTTCC-CSSCCEE-TT-EECC-----------------------HHHHHHHHHHTTSH
T ss_pred HHhhHhcCCcHHHHHHHHHHHHHcCCC-CCCCCcC-CC-Eecc-----------------------HHHHHHHHHHcCcH
Confidence 444678988775 4455556666643 4444432 22 2211 1246777777773
Q ss_pred -------chhhhhccC--CCC---CHHHHHHHHHHhhhhHhhcCCCCCCCCcchhhh
Q 023056 88 -------KWSLIAGRL--PGR---TDNEIKNYWNTHIKRKLLNRGLDPQTHRPLNQI 132 (288)
Q Consensus 88 -------~W~~IA~~l--pgR---T~~qck~Rw~~~l~~~~~~~~~~~~ed~~L~~~ 132 (288)
.|..||..| |.- .+..++..|..+|.+-=. ++++|...|.+-
T Consensus 58 ~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~YE~---~~~~e~~~l~~~ 111 (121)
T 2rq5_A 58 QQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSYDS---LSPEEHRRLEKE 111 (121)
T ss_dssp HHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHHHH---CCHHHHHHHHHH
T ss_pred HHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHHHC---cCHHHHhhHHHH
Confidence 699999998 322 256889999888765432 445555555443
No 128
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=31.04 E-value=47 Score=23.75 Aligned_cols=39 Identities=21% Similarity=0.237 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHhcCchhhhhccCCCCCHHHHHHHHHHhh
Q 023056 73 EEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHI 112 (288)
Q Consensus 73 eED~~L~~lv~~~G~~W~~IA~~lpgRT~~qck~Rw~~~l 112 (288)
+.+..++.++-..|-.-..||..| |-+...|+.+....+
T Consensus 40 ~~~r~vl~l~~~~g~s~~eIA~~l-gis~~tV~~~l~ra~ 78 (92)
T 3hug_A 40 AEHRAVIQRSYYRGWSTAQIATDL-GIAEGTVKSRLHYAV 78 (92)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHH
Confidence 344555666666678899999999 899999998876544
No 129
>2yqf_A Ankyrin-1; death domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yvi_A
Probab=29.86 E-value=54 Score=24.81 Aligned_cols=35 Identities=20% Similarity=0.366 Sum_probs=28.6
Q ss_pred ChHHHHHHHHHHHHhcCchhhhhccCCCCCHHHHHH
Q 023056 71 TDEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKN 106 (288)
Q Consensus 71 T~eED~~L~~lv~~~G~~W~~IA~~lpgRT~~qck~ 106 (288)
+..-+..|..+....|..|..+|+.| |=+..+|..
T Consensus 14 ~~~~~~~~~~ia~~lg~~Wk~LAr~L-g~s~~~I~~ 48 (111)
T 2yqf_A 14 TEQAEMKMAVISEHLGLSWAELAREL-QFSVEDINR 48 (111)
T ss_dssp SHHHHHHHHHHHHHHTTTHHHHHHHT-TCCHHHHHH
T ss_pred HhHHHHHHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 56667778888888999999999999 777776654
No 130
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=28.40 E-value=23 Score=28.44 Aligned_cols=43 Identities=14% Similarity=0.210 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHhCCCCcccccchhcCccchhhhhhhhhhhcCCC
Q 023056 20 EEDQRLIDYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPD 64 (288)
Q Consensus 20 eED~~L~~~V~~~g~~~W~~Ia~~~~~~Rs~~qcr~Rw~~~L~p~ 64 (288)
+-|.+|+.+++..+.-.|.+||+.++ -+...|+.|+.+.....
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~lg--~s~~tv~~rl~~L~~~g 45 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKVG--LSTTPCWRRIQKMEEDG 45 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHHT--CCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHC--cCHHHHHHHHHHHHHCC
Confidence 45888999999988889999999998 68888888887765443
No 131
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=28.33 E-value=59 Score=21.79 Aligned_cols=33 Identities=12% Similarity=-0.012 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHhcCchhhhhccCCCCCHHHHHH
Q 023056 73 EEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKN 106 (288)
Q Consensus 73 eED~~L~~lv~~~G~~W~~IA~~lpgRT~~qck~ 106 (288)
-|.+.|..+...++++++..|+.| |=+...+..
T Consensus 19 ~E~~~i~~aL~~~~gn~~~aA~~L-Gisr~tL~r 51 (63)
T 3e7l_A 19 FEKIFIEEKLREYDYDLKRTAEEI-GIDLSNLYR 51 (63)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHH-TCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHH-CcCHHHHHH
Confidence 477788899999999999999998 666555544
No 132
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=27.03 E-value=58 Score=25.68 Aligned_cols=28 Identities=14% Similarity=0.010 Sum_probs=22.6
Q ss_pred hcCchhhhhccCCCCCHHHHHHHHHHhhh
Q 023056 85 LGNKWSLIAGRLPGRTDNEIKNYWNTHIK 113 (288)
Q Consensus 85 ~G~~W~~IA~~lpgRT~~qck~Rw~~~l~ 113 (288)
.|-....||..| |-+...|+.+....++
T Consensus 150 ~g~s~~eIA~~l-gis~~tV~~~l~ra~~ 177 (184)
T 2q1z_A 150 GDLTHRELAAET-GLPLGTIKSRIRLALD 177 (184)
T ss_dssp SCCSSCCSTTTC-CCCCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 356789999999 8899999988776553
No 133
>2of5_A Death domain-containing protein cradd; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=27.03 E-value=53 Score=25.33 Aligned_cols=29 Identities=28% Similarity=0.455 Sum_probs=23.1
Q ss_pred HHHHHHHHhcCchhhhhccCCCCCHHHHHH
Q 023056 77 LIIKLHSLLGNKWSLIAGRLPGRTDNEIKN 106 (288)
Q Consensus 77 ~L~~lv~~~G~~W~~IA~~lpgRT~~qck~ 106 (288)
.|..++...|..|..+|+.| |=+..+|..
T Consensus 26 ~l~~Ia~~lG~~Wk~LAR~L-Glse~dId~ 54 (114)
T 2of5_A 26 QINQLAQRLGPEWEPMVLSL-GLSQTDIYR 54 (114)
T ss_dssp HHHHHHHTCCSTHHHHHHTT-TCCHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 56666788999999999999 777776644
No 134
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=26.53 E-value=84 Score=22.67 Aligned_cols=36 Identities=14% Similarity=0.023 Sum_probs=28.4
Q ss_pred hHHHHHHHHHHHHhcCchhhhhccCCCCCHHHHHHHH
Q 023056 72 DEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYW 108 (288)
Q Consensus 72 ~eED~~L~~lv~~~G~~W~~IA~~lpgRT~~qck~Rw 108 (288)
.-|...|..++..++++.+..|+.| |=+...+..+-
T Consensus 50 ~~E~~~i~~aL~~~~gn~~~aA~~L-GIsr~tL~rkl 85 (91)
T 1ntc_A 50 ELERTLLTTALRHTQGHKQEAARLL-GWGAATLTAKL 85 (91)
T ss_dssp HHHHHHHHHHHHHTTTCTTHHHHHT-TCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHH-CcCHHHHHHHH
Confidence 3477788899999999999999999 77776665543
No 135
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=26.53 E-value=85 Score=21.22 Aligned_cols=40 Identities=13% Similarity=0.126 Sum_probs=29.2
Q ss_pred CChHHHHHHHHHHHHhcCchhhhhccCCCCCHHHHHHHHHHhh
Q 023056 70 FTDEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHI 112 (288)
Q Consensus 70 WT~eED~~L~~lv~~~G~~W~~IA~~lpgRT~~qck~Rw~~~l 112 (288)
+|+.|-+.| .++ ..|-.-..||..| |-+...++.+....+
T Consensus 17 L~~~e~~vl-~l~-~~g~s~~eIA~~l-~is~~tV~~~~~r~~ 56 (79)
T 1x3u_A 17 LSERERQVL-SAV-VAGLPNKSIAYDL-DISPRTVEVHRANVM 56 (79)
T ss_dssp HCHHHHHHH-HHH-TTTCCHHHHHHHT-TSCHHHHHHHHHHHH
T ss_pred CCHHHHHHH-HHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHH
Confidence 455554444 444 5677889999999 889999998776654
No 136
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=26.06 E-value=60 Score=25.25 Aligned_cols=45 Identities=18% Similarity=0.146 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHhc-CchhhhhccCCCCCHHHHHHHHHHhhhhHhhc
Q 023056 73 EEDELIIKLHSLLG-NKWSLIAGRLPGRTDNEIKNYWNTHIKRKLLN 118 (288)
Q Consensus 73 eED~~L~~lv~~~G-~~W~~IA~~lpgRT~~qck~Rw~~~l~~~~~~ 118 (288)
+-|..|+.+....| -.+..||+.+ |-+...+..+...+....+..
T Consensus 9 ~~d~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~i~ 54 (151)
T 2dbb_A 9 RVDMQLVKILSENSRLTYRELADIL-NTTRQRIARRIDKLKKLGIIR 54 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHT-TSCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCEE
Confidence 45667777777766 6899999999 889999999999888777664
No 137
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=25.97 E-value=54 Score=26.64 Aligned_cols=47 Identities=21% Similarity=0.225 Sum_probs=38.1
Q ss_pred hHHHHHHHHHHHHhc-CchhhhhccCCCCCHHHHHHHHHHhhhhHhhcC
Q 023056 72 DEEDELIIKLHSLLG-NKWSLIAGRLPGRTDNEIKNYWNTHIKRKLLNR 119 (288)
Q Consensus 72 ~eED~~L~~lv~~~G-~~W~~IA~~lpgRT~~qck~Rw~~~l~~~~~~~ 119 (288)
.+-|..|+.+....| -.+..||+.+ |-+...|+.|...+....+..+
T Consensus 26 d~~d~~IL~~L~~~~~~s~~eLA~~l-glS~~tv~~rl~~L~~~G~I~~ 73 (171)
T 2e1c_A 26 DEIDKKIIKILQNDGKAPLREISKIT-GLAESTIHERIRKLRESGVIKK 73 (171)
T ss_dssp CHHHHHHHHHHHHCTTCCHHHHHHHH-TSCHHHHHHHHHHHHHTTSSCC
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCeEe
Confidence 355677788777776 6799999999 8899999999988887776653
No 138
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=25.80 E-value=33 Score=25.32 Aligned_cols=38 Identities=24% Similarity=0.395 Sum_probs=26.0
Q ss_pred HHHHHHHHhc--------CchhhhhccC--CC-C-CHHHHHHHHHHhhhh
Q 023056 77 LIIKLHSLLG--------NKWSLIAGRL--PG-R-TDNEIKNYWNTHIKR 114 (288)
Q Consensus 77 ~L~~lv~~~G--------~~W~~IA~~l--pg-R-T~~qck~Rw~~~l~~ 114 (288)
+|..+|...| +.|..|+..| +. - .+..++..|..+|.+
T Consensus 40 ~Ly~~V~~~GG~~~V~~~~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L~~ 89 (96)
T 2jxj_A 40 ALSKIVASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERILYP 89 (96)
T ss_dssp HHHHHHHHHHTTHHHHHHTTHHHHHHHHTCCSCSCHHHHHHHHHTTTTHH
T ss_pred HHHHHHHHcCCHHHHccCCcHHHHHHHhCCCCcCcHHHHHHHHHHHHHHH
Confidence 3666676665 4699999987 22 1 256788888777654
No 139
>2o71_A Death domain-containing protein cradd; raidd, apoptosis; 2.00A {Homo sapiens}
Probab=25.72 E-value=55 Score=25.27 Aligned_cols=29 Identities=28% Similarity=0.455 Sum_probs=23.0
Q ss_pred HHHHHHHHhcCchhhhhccCCCCCHHHHHH
Q 023056 77 LIIKLHSLLGNKWSLIAGRLPGRTDNEIKN 106 (288)
Q Consensus 77 ~L~~lv~~~G~~W~~IA~~lpgRT~~qck~ 106 (288)
.|..++...|..|..+|+.| |=+..+|..
T Consensus 26 ~l~~Ia~~LG~~Wk~LAR~L-Glse~dId~ 54 (115)
T 2o71_A 26 QINQLAQRLGPEWEPMVLSL-GLSQTDIYR 54 (115)
T ss_dssp HHHHHHHHCCTTHHHHHHHT-TCCHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 56666788999999999999 777776643
No 140
>2of5_H Leucine-rich repeat and death domain-containing protein; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=25.71 E-value=50 Score=25.41 Aligned_cols=31 Identities=23% Similarity=0.456 Sum_probs=24.9
Q ss_pred HHHHHHHHHHhcCchhhhhccCCCCCHHHHHH
Q 023056 75 DELIIKLHSLLGNKWSLIAGRLPGRTDNEIKN 106 (288)
Q Consensus 75 D~~L~~lv~~~G~~W~~IA~~lpgRT~~qck~ 106 (288)
|..|..+....|..|..+|+.| |=+..+|..
T Consensus 13 ~~~l~~ia~~lg~dWk~LAr~L-g~s~~~I~~ 43 (118)
T 2of5_H 13 QSNLLSVAGRLGLDWPAVALHL-GVSYREVQR 43 (118)
T ss_dssp HHHHHHHHHTCCTTHHHHHHHT-TCCHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHc-CCCHHHHHH
Confidence 4567778888999999999999 777776644
No 141
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=24.90 E-value=73 Score=22.56 Aligned_cols=38 Identities=5% Similarity=0.112 Sum_probs=27.9
Q ss_pred HHHHHHHHHHH----hcCchhhhhccCCCCCHHHHHHHHHHhh
Q 023056 74 EDELIIKLHSL----LGNKWSLIAGRLPGRTDNEIKNYWNTHI 112 (288)
Q Consensus 74 ED~~L~~lv~~----~G~~W~~IA~~lpgRT~~qck~Rw~~~l 112 (288)
.+..++.+.-. .|-.+..||..| |-|...|+.+....+
T Consensus 22 ~er~vl~l~~~l~~~~~~s~~EIA~~l-gis~~tV~~~~~ra~ 63 (87)
T 1tty_A 22 REAMVLRMRYGLLDGKPKTLEEVGQYF-NVTRERIRQIEVKAL 63 (87)
T ss_dssp HHHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHH-CCCHHHHHHHHHHHH
Confidence 34445555544 467899999999 999999998776655
No 142
>1wxp_A THO complex subunit 1; death domain, structural genomics, nuclear matrix, riken structural genomics/proteomics initiative, RSGI, transport protein; NMR {Homo sapiens}
Probab=24.67 E-value=80 Score=23.83 Aligned_cols=31 Identities=32% Similarity=0.558 Sum_probs=24.2
Q ss_pred HHHHHHHHHHhcCchhhhhccCCCCCHHHHHH
Q 023056 75 DELIIKLHSLLGNKWSLIAGRLPGRTDNEIKN 106 (288)
Q Consensus 75 D~~L~~lv~~~G~~W~~IA~~lpgRT~~qck~ 106 (288)
+..|..+....|..|..+|+.| |=+..+|..
T Consensus 18 ~~~~~~ia~~lg~~Wk~LAr~L-g~~~~~I~~ 48 (110)
T 1wxp_A 18 GEQIEVFANKLGEQWKILAPYL-EMKDSEIRQ 48 (110)
T ss_dssp HHHHHHHHHHHTTTHHHHTTTT-TCCHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHh-CCCHHHHHH
Confidence 4556667778899999999999 777777654
No 143
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=24.25 E-value=85 Score=24.84 Aligned_cols=28 Identities=11% Similarity=0.023 Sum_probs=22.6
Q ss_pred hcCchhhhhccCCCCCHHHHHHHHHHhhh
Q 023056 85 LGNKWSLIAGRLPGRTDNEIKNYWNTHIK 113 (288)
Q Consensus 85 ~G~~W~~IA~~lpgRT~~qck~Rw~~~l~ 113 (288)
.|-....||..| |-+...|+.+....++
T Consensus 155 ~g~s~~EIA~~l-gis~~tV~~~l~ra~~ 182 (194)
T 1or7_A 155 DGLSYEEIAAIM-DCPVGTVRSRIFRARE 182 (194)
T ss_dssp TCCCHHHHHHHT-TSCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHH-CCCHHHHHHHHHHHHH
Confidence 356789999999 8999999988776553
No 144
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=23.68 E-value=70 Score=24.96 Aligned_cols=46 Identities=20% Similarity=0.196 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHhc-CchhhhhccCCCCCHHHHHHHHHHhhhhHhhcC
Q 023056 73 EEDELIIKLHSLLG-NKWSLIAGRLPGRTDNEIKNYWNTHIKRKLLNR 119 (288)
Q Consensus 73 eED~~L~~lv~~~G-~~W~~IA~~lpgRT~~qck~Rw~~~l~~~~~~~ 119 (288)
+-|..|+.+....| -.+..||+.+ |-+...|..+...+....+..+
T Consensus 7 ~~~~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~i~~ 53 (151)
T 2cyy_A 7 EIDKKIIKILQNDGKAPLREISKIT-GLAESTIHERIRKLRESGVIKK 53 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHH-CSCHHHHHHHHHHHHHHTSSCC
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCeEE
Confidence 34667777777766 6899999999 8899999999998887777654
No 145
>2jvw_A Uncharacterized protein; solution structure, alpha helical protein, structural GE unknown function, PSI-2, protein structure initiative; NMR {Vibrio fischeri}
Probab=23.13 E-value=35 Score=25.33 Aligned_cols=46 Identities=20% Similarity=0.446 Sum_probs=32.9
Q ss_pred HHHHHHHHHHhCCCCcccccchhcCccchhhhhhhhhhhcCCCC-------CCCCCChHHHHHHHH
Q 023056 22 DQRLIDYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDL-------KRGNFTDEEDELIIK 80 (288)
Q Consensus 22 D~~L~~~V~~~g~~~W~~Ia~~~~~~Rs~~qcr~Rw~~~L~p~~-------krg~WT~eED~~L~~ 80 (288)
+.+|.++|..|| |..++..+.. | |+ ..+|++ ++.+|..+..+.|.-
T Consensus 18 E~ilt~Lv~~YG---W~~L~~~i~I-~----CF-----~~~PSikSSLKFLRKTpWAR~KVE~lYL 70 (88)
T 2jvw_A 18 QKLLTELVEHYG---WEELSYMVNI-N----CF-----KKDPSIKSSLKFLRKTDWARERVENIYL 70 (88)
T ss_dssp HHHHHHHHHHTC---HHHHHHHTTS-S----ST-----TSSCCHHHHHHHHHHSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC---HHHHHhhccc-c----cC-----CCCCchHHHHHHHhcCHhHHHHHHHHHH
Confidence 568899999999 9999987765 2 22 134443 467898888777653
No 146
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=22.11 E-value=1.2e+02 Score=21.83 Aligned_cols=44 Identities=16% Similarity=0.117 Sum_probs=33.7
Q ss_pred CCCCChHHHHHHHHHHHHhcCchhhhhccCCCCCHHHHHHHHHHhhh
Q 023056 67 RGNFTDEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIK 113 (288)
Q Consensus 67 rg~WT~eED~~L~~lv~~~G~~W~~IA~~lpgRT~~qck~Rw~~~l~ 113 (288)
....|+.|-+.|.-++ .|..-..||..| |-+...|+.+...+++
T Consensus 27 ~~~Lt~rE~~Vl~l~~--~G~s~~eIA~~L-~iS~~TV~~~~~~i~~ 70 (90)
T 3ulq_B 27 QDVLTPRECLILQEVE--KGFTNQEIADAL-HLSKRSIEYSLTSIFN 70 (90)
T ss_dssp --CCCHHHHHHHHHHH--TTCCHHHHHHHH-TCCHHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHH--cCCCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 4468888877665544 788889999999 9999999998877553
No 147
>2lkq_A Immunoglobulin lambda-like polypeptide 1; PRE-BCR, B cell development, immune system; NMR {Homo sapiens}
Probab=21.77 E-value=10 Score=21.32 Aligned_cols=18 Identities=50% Similarity=0.944 Sum_probs=12.7
Q ss_pred hhhhhhhhhhcCCCCCCCCCC
Q 023056 51 KSCRLRWINYLRPDLKRGNFT 71 (288)
Q Consensus 51 ~qcr~Rw~~~L~p~~krg~WT 71 (288)
.+.|.||-++| +.+|.||
T Consensus 3 sslrsrwgrfl---lqrgswt 20 (26)
T 2lkq_A 3 SSLRSRWGRFL---LQRGSWT 20 (26)
T ss_dssp TTTTTHHHHHT---HHHHTCC
T ss_pred hhHHHHHHHHH---HHcCCcc
Confidence 35678888876 4577776
No 148
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=20.79 E-value=1e+02 Score=22.26 Aligned_cols=42 Identities=26% Similarity=0.268 Sum_probs=32.1
Q ss_pred CCChHHHHHHHHHHHHhcCchhhhhccCCCCCHHHHHHHHHHhhh
Q 023056 69 NFTDEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIK 113 (288)
Q Consensus 69 ~WT~eED~~L~~lv~~~G~~W~~IA~~lpgRT~~qck~Rw~~~l~ 113 (288)
..|+.|-+.|.- + ..|-.-..||..| |-+...|+.+....++
T Consensus 27 ~Lt~~e~~vl~l-~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~ 68 (95)
T 3c57_A 27 GLTDQERTLLGL-L-SEGLTNKQIADRM-FLAEKTVKNYVSRLLA 68 (95)
T ss_dssp CCCHHHHHHHHH-H-HTTCCHHHHHHHH-TCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHH-H-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 467766665554 4 6778889999999 8899999988766553
No 149
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=20.66 E-value=1.4e+02 Score=19.70 Aligned_cols=42 Identities=17% Similarity=0.129 Sum_probs=32.0
Q ss_pred CCCChHHHHHHHHHHHHhcCchhhhhccCCCCCHHHHHHHHHHhh
Q 023056 68 GNFTDEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHI 112 (288)
Q Consensus 68 g~WT~eED~~L~~lv~~~G~~W~~IA~~lpgRT~~qck~Rw~~~l 112 (288)
..+|+.|-+.|.- + ..|.....||..| |-+...++.+....+
T Consensus 10 ~~L~~~e~~il~~-~-~~g~s~~eIA~~l-~is~~tV~~~~~~~~ 51 (74)
T 1fse_A 10 PLLTKREREVFEL-L-VQDKTTKEIASEL-FISEKTVRNHISNAM 51 (74)
T ss_dssp CCCCHHHHHHHHH-H-TTTCCHHHHHHHH-TSCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHH-H-HcCCCHHHHHHHH-CCCHHHHHHHHHHHH
Confidence 3577777766654 4 5677889999999 889999998776654
No 150
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=20.64 E-value=1.2e+02 Score=22.76 Aligned_cols=38 Identities=13% Similarity=0.067 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHhcCchhhhhccCCCCCHHHHHHHHHHhh
Q 023056 74 EDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHI 112 (288)
Q Consensus 74 ED~~L~~lv~~~G~~W~~IA~~lpgRT~~qck~Rw~~~l 112 (288)
.+..++.++-..|-....||..| |-+...++.+....+
T Consensus 29 ~~r~vl~l~~~~g~s~~EIA~~l-giS~~tV~~~l~ra~ 66 (113)
T 1xsv_A 29 KQRNYLELFYLEDYSLSEIADTF-NVSRQAVYDNIRRTG 66 (113)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHT-TCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHH
Confidence 34455556666788899999999 889999988776544
No 151
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=20.56 E-value=57 Score=26.35 Aligned_cols=35 Identities=17% Similarity=0.330 Sum_probs=26.3
Q ss_pred ccccchhcCccchhhhhhhhhhhcCCCCCCCCCChHHHHHHHH
Q 023056 38 RSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTDEEDELIIK 80 (288)
Q Consensus 38 ~~Ia~~~~~~Rs~~qcr~Rw~~~L~p~~krg~WT~eED~~L~~ 80 (288)
..||..+.+ +|..++|..+. + ...||+||++.|.+
T Consensus 119 ~~vA~~ikg-kt~eeir~~f~------I-~nd~t~eEe~~ir~ 153 (160)
T 2p1m_A 119 QTVADMIKG-KTPEEIRTTFN------I-KNDFTPEEEEEVRR 153 (160)
T ss_dssp HHHHHTTTT-CCHHHHHHHTT------C-CCCCCHHHHHHHHH
T ss_pred HHHHHHHcC-CCHHHHHHHcC------C-CCCCCHHHHHHHHH
Confidence 466777777 99999998663 2 23599999988764
No 152
>1qb3_A Cyclin-dependent kinases regulatory subunit; cell cycle mutagenesis domain swapping, cyclin-dependent KIN cycle; 3.00A {Saccharomyces cerevisiae} SCOP: d.97.1.1
Probab=20.49 E-value=19 Score=29.39 Aligned_cols=9 Identities=33% Similarity=0.560 Sum_probs=3.9
Q ss_pred CChHHHHHH
Q 023056 70 FTDEEDELI 78 (288)
Q Consensus 70 WT~eED~~L 78 (288)
-|++|...|
T Consensus 13 l~d~er~~l 21 (150)
T 1qb3_A 13 LTDQERARV 21 (150)
T ss_dssp CCHHHHHHH
T ss_pred chHHHHHHH
Confidence 344444443
Done!