Query 023057
Match_columns 288
No_of_seqs 135 out of 1394
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 08:08:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023057.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023057hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0139 Short-chain acyl-CoA d 100.0 1.2E-53 2.6E-58 363.1 13.8 280 3-288 11-290 (398)
2 KOG0141 Isovaleryl-CoA dehydro 100.0 2.5E-52 5.5E-57 350.1 15.0 277 11-288 21-299 (421)
3 KOG0140 Medium-chain acyl-CoA 100.0 1.3E-48 2.8E-53 327.5 15.2 257 28-288 25-284 (408)
4 PLN02519 isovaleryl-CoA dehydr 100.0 5.5E-46 1.2E-50 341.7 29.3 265 23-288 18-282 (404)
5 cd01151 GCD Glutaryl-CoA dehyd 100.0 2.6E-45 5.5E-50 335.5 28.8 254 27-288 9-262 (386)
6 cd01156 IVD Isovaleryl-CoA deh 100.0 1.6E-45 3.5E-50 335.8 27.3 255 31-288 2-256 (376)
7 PRK03354 crotonobetainyl-CoA d 100.0 6.5E-45 1.4E-49 332.1 27.7 256 27-288 1-257 (380)
8 cd01162 IBD Isobutyryl-CoA deh 100.0 1.2E-44 2.5E-49 330.0 27.6 253 31-288 1-253 (375)
9 cd01157 MCAD Medium chain acyl 100.0 1.6E-44 3.4E-49 329.5 27.0 254 31-288 1-257 (378)
10 cd01160 LCAD Long chain acyl-C 100.0 1.8E-44 3.8E-49 328.5 26.9 252 33-288 1-253 (372)
11 PTZ00461 isovaleryl-CoA dehydr 100.0 2.3E-44 5E-49 331.5 27.3 256 25-288 31-287 (410)
12 TIGR03207 cyc_hxne_CoA_dh cycl 100.0 2.2E-44 4.7E-49 327.9 26.7 253 31-288 1-254 (372)
13 PRK12341 putative acyl-CoA deh 100.0 3.6E-44 7.8E-49 327.4 27.5 255 27-288 1-258 (381)
14 cd01158 SCAD_SBCAD Short chain 100.0 6.2E-44 1.3E-48 325.0 26.4 252 34-288 2-253 (373)
15 cd01161 VLCAD Very long chain 100.0 1.4E-43 2.9E-48 326.4 27.8 256 27-288 23-284 (409)
16 PLN02526 acyl-coenzyme A oxida 100.0 4.3E-43 9.3E-48 323.1 28.2 255 26-288 24-278 (412)
17 TIGR03203 pimD_small pimeloyl- 100.0 2.8E-43 6.2E-48 320.7 25.8 252 29-288 2-256 (378)
18 PRK09463 fadE acyl-CoA dehydro 100.0 4.1E-43 9E-48 338.5 27.2 277 6-288 53-350 (777)
19 PRK13026 acyl-CoA dehydrogenas 100.0 3.3E-42 7.3E-47 331.1 27.9 277 6-288 52-349 (774)
20 TIGR03204 pimC_large pimeloyl- 100.0 8.4E-41 1.8E-45 306.3 26.9 253 29-288 2-258 (395)
21 cd01155 ACAD_FadE2 Acyl-CoA de 100.0 5.4E-41 1.2E-45 307.7 24.7 253 35-288 3-272 (394)
22 cd01153 ACAD_fadE5 Putative ac 100.0 7.3E-40 1.6E-44 301.3 26.5 244 40-288 2-265 (407)
23 COG1960 CaiA Acyl-CoA dehydrog 100.0 2.3E-39 5.1E-44 296.9 24.4 258 28-288 2-268 (393)
24 cd01152 ACAD_fadE6_17_26 Putat 100.0 1.1E-39 2.4E-44 297.7 21.1 249 33-287 1-255 (380)
25 cd01163 DszC Dibenzothiophene 100.0 2.4E-39 5.2E-44 295.3 22.5 235 43-288 3-237 (377)
26 PLN02876 acyl-CoA dehydrogenas 100.0 3.3E-38 7.1E-43 312.2 25.8 257 29-288 400-696 (822)
27 KOG0137 Very-long-chain acyl-C 100.0 1.8E-39 3.9E-44 293.1 14.8 279 7-288 52-338 (634)
28 PTZ00456 acyl-CoA dehydrogenas 100.0 7.5E-38 1.6E-42 298.5 26.1 256 29-288 53-334 (622)
29 KOG0138 Glutaryl-CoA dehydroge 100.0 2.7E-38 5.8E-43 265.0 17.0 259 21-287 45-305 (432)
30 PLN02636 acyl-coenzyme A oxida 100.0 1.6E-36 3.5E-41 291.9 23.4 250 30-288 60-350 (686)
31 PTZ00457 acyl-CoA dehydrogenas 100.0 3.5E-35 7.5E-40 273.1 25.9 243 5-288 13-266 (520)
32 PLN02312 acyl-CoA oxidase 100.0 1.6E-34 3.5E-39 277.6 24.1 227 57-288 99-355 (680)
33 cd01154 AidB Proteins involved 100.0 4.4E-34 9.5E-39 263.6 24.6 237 42-288 36-290 (418)
34 cd01159 NcnH Naphthocyclinone 100.0 7.3E-34 1.6E-38 258.6 15.9 227 43-288 3-238 (370)
35 cd00567 ACAD Acyl-CoA dehydrog 100.0 1.3E-31 2.9E-36 239.5 20.4 208 34-288 2-210 (327)
36 KOG1469 Predicted acyl-CoA deh 100.0 8.1E-32 1.8E-36 222.9 10.4 219 70-288 32-260 (392)
37 cd01150 AXO Peroxisomal acyl-C 100.0 2.7E-29 5.9E-34 240.4 18.3 195 94-288 80-305 (610)
38 PRK11561 isovaleryl CoA dehydr 100.0 1.6E-28 3.5E-33 230.0 21.9 209 67-288 88-315 (538)
39 PTZ00460 acyl-CoA dehydrogenas 100.0 1.3E-27 2.8E-32 229.0 17.3 179 110-288 89-293 (646)
40 PLN02443 acyl-coenzyme A oxida 99.9 7.9E-26 1.7E-30 217.1 16.8 173 116-288 99-301 (664)
41 KOG0135 Pristanoyl-CoA/acyl-Co 99.8 7.9E-20 1.7E-24 164.9 12.6 214 69-286 81-325 (661)
42 PF02771 Acyl-CoA_dh_N: Acyl-C 99.8 2.2E-20 4.9E-25 141.3 7.3 113 32-147 1-113 (113)
43 TIGR02309 HpaB-1 4-hydroxyphen 99.6 2.4E-14 5.1E-19 133.4 14.1 148 134-287 127-301 (477)
44 PF02770 Acyl-CoA_dh_M: Acyl-C 99.6 8.5E-15 1.8E-19 94.6 6.7 52 151-202 1-52 (52)
45 KOG0136 Acyl-CoA oxidase [Lipi 99.6 4.5E-14 9.8E-19 130.6 13.5 148 107-254 102-264 (670)
46 PF11794 HpaB_N: 4-hydroxyphen 98.7 1.9E-07 4.2E-12 80.1 11.3 122 133-254 122-263 (264)
47 COG2368 Aromatic ring hydroxyl 98.5 1.4E-06 3E-11 79.5 10.7 122 134-255 131-276 (493)
48 TIGR02310 HpaB-2 4-hydroxyphen 98.4 5.4E-06 1.2E-10 77.8 14.4 121 133-255 135-280 (519)
49 PF14749 Acyl-CoA_ox_N: Acyl-c 89.8 0.35 7.6E-06 36.8 3.1 35 114-148 90-124 (125)
50 PF02084 Bindin: Bindin; Inte 33.7 1.5E+02 0.0033 25.0 6.0 67 59-146 96-163 (238)
51 PF04115 Ureidogly_hydro: Urei 33.7 1.2E+02 0.0025 24.3 5.4 48 181-229 80-128 (165)
52 PF05284 DUF736: Protein of un 30.6 1.6E+02 0.0035 21.7 5.2 63 180-246 15-78 (107)
53 PF01726 LexA_DNA_bind: LexA D 21.4 1.2E+02 0.0026 20.0 2.8 52 29-81 2-57 (65)
54 COG2524 Predicted transcriptio 20.2 3.3E+02 0.0071 23.8 5.8 59 30-92 3-66 (294)
55 KOG2675 Adenylate cyclase-asso 20.1 2.5E+02 0.0055 26.2 5.4 68 173-246 323-390 (480)
No 1
>KOG0139 consensus Short-chain acyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=100.00 E-value=1.2e-53 Score=363.10 Aligned_cols=280 Identities=38% Similarity=0.642 Sum_probs=258.7
Q ss_pred ccccccccccccccccccccccCCCCCCCCHHHHHHHHHHHHHHHHhhcCcccccccccCCCCCcHHHHHHHHhCCCCCC
Q 023057 3 RLLGARSLCASFFTKKQKHSAAFSSTSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGI 82 (288)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~Gl~~~ 82 (288)
|+...++.+.+..+..... .+.+-..++|++. ++++++|+|+++.+.|.++++|++..+|. ...+.+.++|++++
T Consensus 11 ~~~~~~ss~~~a~~~~~~~--~~~pl~~l~E~e~-~l~~tvrkfa~~~i~Plv~~mD~~~~~~~--~v~k~~fe~Glmgv 85 (398)
T KOG0139|consen 11 RLIASRSSTLSASASSTPK--KPAPLQILSETEQ-MLQKTVRKFAQEEIKPLVREMDRESRYPA--SVIKGLFELGLMGV 85 (398)
T ss_pred ccccccccchhhhhhcCCC--CCCchhhcCcHHH-HHHHHHHHHHHHhcchHHHhhhhhccCCH--HHHHHHhhcCccee
Confidence 3444455554444443332 2335567899999 99999999999999999999999999999 99999999999999
Q ss_pred CCCcCCCCCCCCHHHHHHHHHHHHhhCCchhhHHHhhhhHHHHHHHhcCCHHHHHhhchhHhcCCeeEEEEecCCCCCCC
Q 023057 83 TAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSD 162 (288)
Q Consensus 83 ~~pe~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~g~d 162 (288)
.+||+|||.|.+....+.++||+++.|+++++.+.+|+.+...++..||+++||+.|+|.+ .|+.++++++|||+.|||
T Consensus 86 ~vpeeyGGsG~df~~~~~v~EEisk~d~sv~~~v~v~ntL~~~~i~~fGteeqK~~~~P~~-~~d~vgsfAlSEpgaGSD 164 (398)
T KOG0139|consen 86 EVPEEYGGSGLDFFAAAIVIEEISKVDASVGVIVDVQNTLYLPLIIQFGTEEQKEKYLPKL-TGDLVGSFALSEPGAGSD 164 (398)
T ss_pred ecChhhCCCchhHHHHHHHHHHHhccCccceeEEEecccccchHHHHhCcHHHHhhhcchh-hccccceeeecCCCCCcc
Confidence 9999999999999999999999999999999999999889999999999999999888885 588899999999999999
Q ss_pred CCCCeEEEEEeCCeEEEeeEeeeeeCCCCCCEEEEEEEeCCCCCCCceEEEEEeCCCCCeEecccccccCCCCCceeeEE
Q 023057 163 VVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELV 242 (288)
Q Consensus 163 ~~~~~~~a~~~~~g~~l~G~k~~v~~~~~ad~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~ 242 (288)
...+.|+|++++|.|+|||+|.|+||+..|++++|++.+++..+++++++|+||++.||+++..+.+++|+|++.++.++
T Consensus 165 a~A~~T~Ak~~Gd~~viNGsKmWItN~~~A~~~lVfan~d~~~~~Kgit~fiV~rd~~Gl~~~k~eDKLGmRaSsTcql~ 244 (398)
T KOG0139|consen 165 AFALKTTAKKDGDDYVINGSKMWITNAGEADWFLVFANADPSKGYKGITCFIVPRDTPGLSLGKKEDKLGMRASSTCQLH 244 (398)
T ss_pred hHHhhhhHhhcCCeEEEecceeeecCCcccceEEEEEecChhhccCceeEEEeeCCCCCcccCCccccccccccceeeEE
Confidence 99999999999999999999999999999999999999988888999999999999999999999999999999999999
Q ss_pred eceeeeCCCCcccCCCccHHHHHHhhhHHHHHHHHHHHHHhhcccC
Q 023057 243 FENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQAPVR 288 (288)
Q Consensus 243 ~~~v~vp~~~~l~~~~~~~~~~~~~~~~~r~~~aa~~~G~a~~al~ 288 (288)
|+||+||++++||..+.|+++....++.+|+.++++++|.++.|+|
T Consensus 245 fedVrVpks~IlGe~G~GykyAm~~Ln~gRIgi~AqmlglaQ~c~d 290 (398)
T KOG0139|consen 245 FEDVRVPKSSILGEYGKGYKYAIEVLNAGRIGIGAQMLGLAQGCFD 290 (398)
T ss_pred eccccccchhhcccCCcchHHHHHhcCccceeehhhhhhhhHhHHH
Confidence 9999999999999999999999999999999999999999999986
No 2
>KOG0141 consensus Isovaleryl-CoA dehydrogenase [Amino acid transport and metabolism; Lipid transport and metabolism]
Probab=100.00 E-value=2.5e-52 Score=350.06 Aligned_cols=277 Identities=66% Similarity=1.020 Sum_probs=258.3
Q ss_pred ccccccccccccccCCCCCCCCHHHHHHHHHHHHHHHHhhcCcccccccccCCCCCcHHHHHHHHhCCCCCCCCCcCCCC
Q 023057 11 CASFFTKKQKHSAAFSSTSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGG 90 (288)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~Gl~~~~~pe~~GG 90 (288)
+++..+........-...+-+++|+. .|++++++|+++++.|.+.++|+.+.++...+.|+++.++|++++..|++|||
T Consensus 21 l~~~~~r~~s~~~~~d~~~g~~~e~~-~~r~sv~kF~qeelaP~a~eidk~n~~~~~r~~WkklG~~gllGita~~~~GG 99 (421)
T KOG0141|consen 21 LPAERTRTPSAYPVDDSMFGLSDEQD-QLRESVRKFFQEELAPHASEIDKANEFKDLREFWKKLGKQGLLGITAPEEYGG 99 (421)
T ss_pred CchhhhhcccccccchhhcCCCHHHH-HHHHHHHHHHHHhhcchhhhhhhcCCcchHHHHHHHhhhcCcccccchhhhCC
Confidence 44444444444455555566899999 99999999999999999999999999987669999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhhCCchhhHHHhhhhHHHHHHHhcCCHHHHHhhchhHhcCCeeEEEEecCCCCCCCCCCCeEEE
Q 023057 91 LGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKA 170 (288)
Q Consensus 91 ~g~~~~~~~~v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~g~d~~~~~~~a 170 (288)
.|.++.+.+.++||++|....+++.++.|++++..-|.+.|+++|+++|||.+.+|+-++++++|||++|||..++.+.|
T Consensus 100 ~G~~y~~h~ivmEE~sra~g~v~lsygaHSnlcinqlvrnGseeQkekylPkl~sGe~iGalAMsEp~AGSDvv~mK~~A 179 (421)
T KOG0141|consen 100 SGGGYLSHCIVMEEISRASGGVALSYGAHSNLCINQLVRNGSEEQKEKYLPKLISGEHIGALAMSEPGAGSDVVSMKLKA 179 (421)
T ss_pred CchhHHHHHHHHHHHHhhcCCcccccccccchHHHHHHhcCCHHHHHhhhhhhhcccccceeeecCCCCCCccceeeeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCeEEEeeEeeeeeCCCCCCEEEEEEEeCCC--CCCCceEEEEEeCCCCCeEecccccccCCCCCceeeEEeceeee
Q 023057 171 DRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIK--AGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFV 248 (288)
Q Consensus 171 ~~~~~g~~l~G~k~~v~~~~~ad~~lv~a~~~~~--~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~~~~v~v 248 (288)
++.++.|+|||+|.|+||++.||.++|.|+++.. ++..++++|+|....||.+..+..+++|||+..++++.|+|++|
T Consensus 180 ek~g~~yiLNGsK~witNG~~advliVyAkTd~~a~~~~hGIt~FiVEkgm~GFs~~~KLdKlGmrgsdTcELvFed~~v 259 (421)
T KOG0141|consen 180 EKKGDDYILNGSKFWITNGPDADVLIVYAKTDHSAVPPSHGITAFIVEKGMPGFSTAQKLDKLGMRGSDTCELVFEDCKV 259 (421)
T ss_pred eecCCcEEecCcEEEEecCCCCcEEEEEEecCCCCCCCcCceEEEEEcCCCcccccchhhHhhcCCCCcchheehhhccC
Confidence 9999999999999999999999999999999865 45678999999999999999899999999999999999999999
Q ss_pred CCCCcccCCCccHHHHHHhhhHHHHHHHHHHHHHhhcccC
Q 023057 249 PNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQAPVR 288 (288)
Q Consensus 249 p~~~~l~~~~~~~~~~~~~~~~~r~~~aa~~~G~a~~al~ 288 (288)
|+.+++|.++.|+-++..-++..|+.+++-.+|++++++|
T Consensus 260 pas~ilg~enkGvYvlMsgLd~ERLvla~gplglmqa~~d 299 (421)
T KOG0141|consen 260 PASNILGEENKGVYVLMSGLDLERLVLAAGPLGLMQAALD 299 (421)
T ss_pred cHHHhcCcCCceEEEEecCCChhHhhhccCchHHHHHHHH
Confidence 9999999999999888899999999999999999999875
No 3
>KOG0140 consensus Medium-chain acyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=100.00 E-value=1.3e-48 Score=327.54 Aligned_cols=257 Identities=36% Similarity=0.606 Sum_probs=248.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhhcCcccccccccCCCCCcHHHHHHHHhCCCCCCCCCcCCCCCCCCHHHHHHHHHHHHh
Q 023057 28 TSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISR 107 (288)
Q Consensus 28 ~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~Gl~~~~~pe~~GG~g~~~~~~~~v~e~l~~ 107 (288)
.+.|+++|. ++++.+++|.++.+.|...++|+.+.+|- +++++..++||.+..+|+++||.|++..+.+.+.|+|+.
T Consensus 25 sf~L~e~qk-e~q~~A~kFa~~e~~P~aae~Dk~ge~P~--~iirkA~~lG~~~~~ip~~~GG~Gls~l~t~lI~E~Lay 101 (408)
T KOG0140|consen 25 SFGLTEDQK-EFQEAARKFAKDEMIPNAAEYDKSGEFPW--EIIRKAHELGFMNTYIPEDYGGLGLSRLDTCLIFEALAY 101 (408)
T ss_pred ccCcchHHH-HHHHHHHHHHHHhhccchhhhcccCCCcH--HHHHHHHHcccCcccCccccCCCCchhHHHHHHHHHHHc
Confidence 589999999 99999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred hCCchhhHHHhhhhHHHHHHHhcCCHHHHHhhchhHhcCCeeEEEEecCCCCCCCCCCCeEEEEEeCCeEEEeeEeeeee
Q 023057 108 ASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCT 187 (288)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~v~ 187 (288)
+|.++...+..|+ ++++.+..+|+++||++||++++....+++.++|||+.|||..++.|+|++.+|.|+|||.|.|+|
T Consensus 102 GCtg~~~~I~~~~-l~~~pi~~~gneeqKkk~lg~l~~~p~~asYcvTEPgAGSDvagikTka~KkGDeYiiNGsKawIt 180 (408)
T KOG0140|consen 102 GCTGIQTAISIHN-LAAWPIILSGNEEQKKKYLGRLAEEPKVASYCVTEPGAGSDVAGIKTKAEKKGDEYIINGSKAWIT 180 (408)
T ss_pred cchhHHHHHhccc-hhhhhehhcCcHHHHHhhhhhhhcchhhhhhhccCCCCCcchhhhhhhhhhcCCEEEEcCceeeee
Confidence 9999998888888 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEEEEeCCC---CCCCceEEEEEeCCCCCeEecccccccCCCCCceeeEEeceeeeCCCCcccCCCccHHHH
Q 023057 188 NGPVAQTLVVYAKTDIK---AGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVM 264 (288)
Q Consensus 188 ~~~~ad~~lv~a~~~~~---~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~~~~v~vp~~~~l~~~~~~~~~~ 264 (288)
|+.+|+|++|++|++++ ++.+.+.+|+|+.+.||++......++|.+..++-.|+|+||+||.+++||.++.|+.+.
T Consensus 181 g~G~anwyfVlaRtd~~pk~p~~Kaft~fiVe~dTpGlt~GkKE~nmGqr~sdTR~itFEDvrVP~~Nvlg~~G~GFkvA 260 (408)
T KOG0140|consen 181 GAGHANWYFVLARTDPDPKTPAGKAFTAFIVEGDTPGLTRGKKEKNMGQRCSDTRGITFEDVRVPKENVLGAPGAGFKVA 260 (408)
T ss_pred cCCccceEEEEEecCCCCCCCCCcceEEEEEeCCCCCcCcChhhhcccccCCCCceeeeeecccchhccccCCCccceeh
Confidence 99999999999999875 446789999999999999999888999999999999999999999999999999999999
Q ss_pred HHhhhHHHHHHHHHHHHHhhcccC
Q 023057 265 MSGLDLERLVLAAGPLGIMQAPVR 288 (288)
Q Consensus 265 ~~~~~~~r~~~aa~~~G~a~~al~ 288 (288)
...++-.|..+++.++|++++++|
T Consensus 261 m~~fd~tRp~vAa~alG~A~r~ld 284 (408)
T KOG0140|consen 261 MGGFDKTRPNVAAGALGLAQRCLD 284 (408)
T ss_pred hhhccCCCCchhhhhhHHHHHHHH
Confidence 999999999999999999999975
No 4
>PLN02519 isovaleryl-CoA dehydrogenase
Probab=100.00 E-value=5.5e-46 Score=341.66 Aligned_cols=265 Identities=87% Similarity=1.366 Sum_probs=241.9
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHHHHhhcCcccccccccCCCCCcHHHHHHHHhCCCCCCCCCcCCCCCCCCHHHHHHHH
Q 023057 23 AAFSSTSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAM 102 (288)
Q Consensus 23 ~~~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~Gl~~~~~pe~~GG~g~~~~~~~~v~ 102 (288)
+..+.++.+++++. ++++.+++|+++.+.+...+.|+.+.+|...++|++|++.||+++.+|+++||.|+++.+.+.++
T Consensus 18 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~a~~~d~~~~~p~~~~~~~~l~~~G~~~~~vP~e~GG~g~~~~~~~~v~ 96 (404)
T PLN02519 18 SSSSSSLLFDDTQL-QFKESVQQFAQENIAPHAAAIDATNSFPKDVNLWKLMGDFNLHGITAPEEYGGLGLGYLYHCIAM 96 (404)
T ss_pred cccCCCCCCCHHHH-HHHHHHHHHHHHhCCcchHHHHhcCCCCchHHHHHHHHHCCCCcccCChhhCCCCCCHHHHHHHH
Confidence 34456778999999 99999999999999998888888888887223799999999999999999999999999999999
Q ss_pred HHHHhhCCchhhHHHhhhhHHHHHHHhcCCHHHHHhhchhHhcCCeeEEEEecCCCCCCCCCCCeEEEEEeCCeEEEeeE
Q 023057 103 EEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGN 182 (288)
Q Consensus 103 e~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~ 182 (288)
|+++++++++++++.+|...+...+..+|+++|+++|||.+.+|+.++|+++|||..|+|...+.+++++++|||+|||+
T Consensus 97 e~la~~~~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~sEp~~gsd~~~~~t~a~~~~~g~~lnG~ 176 (404)
T PLN02519 97 EEISRASGSVGLSYGAHSNLCINQLVRNGTPAQKEKYLPKLISGEHVGALAMSEPNSGSDVVSMKCKAERVDGGYVLNGN 176 (404)
T ss_pred HHHhhhcccHHHHHHhhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCcCCCcccceEEEEEeCCEEEEEeE
Confidence 99999999999888888655566788899999999999999999999999999999999999999999999999999999
Q ss_pred eeeeeCCCCCCEEEEEEEeCCCCCCCceEEEEEeCCCCCeEecccccccCCCCCceeeEEeceeeeCCCCcccCCCccHH
Q 023057 183 KMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVY 262 (288)
Q Consensus 183 k~~v~~~~~ad~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~~~~v~vp~~~~l~~~~~~~~ 262 (288)
|+|++++..||+++|.+++++++++.++.+|+||++.|||++.++|+++|++++++++|.|+||+||++++++..+.|+.
T Consensus 177 K~~vs~a~~ad~~~v~a~~~~~~~~~~~~~~lVp~~~~Gv~~~~~~~~~G~rgt~s~~v~f~~v~Vp~~~~lg~~~~G~~ 256 (404)
T PLN02519 177 KMWCTNGPVAQTLVVYAKTDVAAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPEENVLGQEGKGVY 256 (404)
T ss_pred EEeecCCCcCCEEEEEEEeCCCCCCCeeEEEEEeCCCCCeeccCcccccCCCCCCeeEEEeCeEEecHHHcCCCCCccHH
Confidence 99999999999999999976544445788999999999999989999999999999999999999999999999888888
Q ss_pred HHHHhhhHHHHHHHHHHHHHhhcccC
Q 023057 263 VMMSGLDLERLVLAAGPLGIMQAPVR 288 (288)
Q Consensus 263 ~~~~~~~~~r~~~aa~~~G~a~~al~ 288 (288)
.....++..|+.+++.++|+++++++
T Consensus 257 ~~~~~~~~~r~~~aa~~lG~a~~al~ 282 (404)
T PLN02519 257 VMMSGLDLERLVLAAGPLGLMQACLD 282 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77788899999999999999999874
No 5
>cd01151 GCD Glutaryl-CoA dehydrogenase. Glutaryl-CoA dehydrogenase (GCD). GCD is an acyl-CoA dehydrogenase, which catalyzes the oxidative decarboxylation of glutaryl-CoA to crotonyl-CoA and carbon dioxide in the catabolism of lysine, hydroxylysine, and tryptophan. It uses electron transfer flavoprotein (ETF) as an electron acceptor. GCD is a homotetramer. GCD deficiency leads to a severe neurological disorder in humans.
Probab=100.00 E-value=2.6e-45 Score=335.54 Aligned_cols=254 Identities=34% Similarity=0.572 Sum_probs=233.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhhcCcccccccccCCCCCcHHHHHHHHhCCCCCCCCCcCCCCCCCCHHHHHHHHHHHH
Q 023057 27 STSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEIS 106 (288)
Q Consensus 27 ~~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~Gl~~~~~pe~~GG~g~~~~~~~~v~e~l~ 106 (288)
|++.++++|. ++++.+++|+++.+.+...+.++.+.+|. ++|++|++.||+++ +|++|||.|+++.+...++|+++
T Consensus 9 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~l~~~Gl~~~-vP~~~GG~g~~~~~~~~v~e~l~ 84 (386)
T cd01151 9 LDDLLTEEER-AIRDTAREFCQEELAPRVLEAYREEKFDR--KIIEEMGELGLLGA-TIKGYGCAGLSSVAYGLIAREVE 84 (386)
T ss_pred cccCCCHHHH-HHHHHHHHHHHHhcCccHHHHHHhCCCCH--HHHHHHHHCCCCcc-CccccCCCCCCHHHHHHHHHHHH
Confidence 6678999999 99999999999999988877788888999 99999999999999 99999999999999999999999
Q ss_pred hhCCchhhHHHhhhhHHHHHHHhcCCHHHHHhhchhHhcCCeeEEEEecCCCCCCCCCCCeEEEEEeCCeEEEeeEeeee
Q 023057 107 RASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWC 186 (288)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~v 186 (288)
+.++++++.+.+|..++...+..+|+++|+++|++++++|+.++|+++|||+.|+|...+.++|++++|||+|||+|.|+
T Consensus 85 ~~~~s~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~i 164 (386)
T cd01151 85 RVDSGYRSFMSVQSSLVMLPIYDFGSEEQKQKYLPKLASGELIGCFGLTEPNHGSDPGGMETRARKDGGGYKLNGSKTWI 164 (386)
T ss_pred hhChhHHHHHHHHHhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCChhhCeEEEEEECCEEEEEEEEEee
Confidence 99999887777765456667889999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCEEEEEEEeCCCCCCCceEEEEEeCCCCCeEecccccccCCCCCceeeEEeceeeeCCCCcccCCCccHHHHHH
Q 023057 187 TNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMS 266 (288)
Q Consensus 187 ~~~~~ad~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~~~~v~vp~~~~l~~~~~~~~~~~~ 266 (288)
|++..||+++|.++++++ .++.+|+||++.||+++.+.|+++|++++++++|+|+||+||++++++. +.++.....
T Consensus 165 s~~~~Ad~~lv~ar~~~~---~~~~~flVp~~~~gv~i~~~~~~~G~~g~~s~~v~f~~v~Vp~~~~l~~-~~g~~~~~~ 240 (386)
T cd01151 165 TNSPIADVFVVWARNDET---GKIRGFILERGMKGLSAPKIQGKFSLRASITGEIVMDNVFVPEENLLPG-AEGLRGPFK 240 (386)
T ss_pred cCCCcCCEEEEEEEECCC---CcEEEEEEcCCCCCeecCCCCCCcCCCCCceeEEEEccEEeCHHHcCCc-cccHHHHHH
Confidence 999999999999997642 3578999999999999989999999999999999999999999999986 467777778
Q ss_pred hhhHHHHHHHHHHHHHhhcccC
Q 023057 267 GLDLERLVLAAGPLGIMQAPVR 288 (288)
Q Consensus 267 ~~~~~r~~~aa~~~G~a~~al~ 288 (288)
.++..|+.+++.++|+++++++
T Consensus 241 ~~~~~r~~~aa~~lG~a~~al~ 262 (386)
T cd01151 241 CLNNARYGIAWGALGAAEDCYH 262 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 8889999999999999999874
No 6
>cd01156 IVD Isovaleryl-CoA dehydrogenase. Isovaleryl-CoA dehydrogenase (IVD) is an is an acyl-CoA dehydrogenase, which catalyzes the third step in leucine catabolism, the conversion of isovaleryl-CoA (3-methylbutyryl-CoA) into 3-methylcrotonyl-CoA. IVD is a homotetramer and has the greatest affinity for small branched chain substrates.
Probab=100.00 E-value=1.6e-45 Score=335.77 Aligned_cols=255 Identities=71% Similarity=1.148 Sum_probs=236.7
Q ss_pred CCHHHHHHHHHHHHHHHHhhcCcccccccccCCCCCcHHHHHHHHhCCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhhCC
Q 023057 31 LFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASG 110 (288)
Q Consensus 31 ~s~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~Gl~~~~~pe~~GG~g~~~~~~~~v~e~l~~~~~ 110 (288)
++++++ ++++.+++|+++.+.+.+.+.|+.+.+|. +.|+.|++.||+++.+|++|||.|+++.+.+.++++++++|+
T Consensus 2 ~~~~~~-~l~~~~~~~~~~~~~~~a~~~d~~~~~~~--~~~~~l~~~Gl~~~~vP~e~GG~g~~~~~~~~~~e~la~~~~ 78 (376)
T cd01156 2 LDDEIE-MLRQSVREFAQKEIAPLAAKIDRDNEFPR--DLWRKMGKLGLLGITAPEEYGGSGMGYLAHVIIMEEISRASG 78 (376)
T ss_pred CCHHHH-HHHHHHHHHHHHhcCcchHHHHhhCCCCH--HHHHHHHhCCCCcccCCHhhCCCCCCHHHHHHHHHHHhccch
Confidence 578888 99999999999999988878888888999 999999999999999999999999999999999999999999
Q ss_pred chhhHHHhhhhHHHHHHHhcCCHHHHHhhchhHhcCCeeEEEEecCCCCCCCCCCCeEEEEEeCCeEEEeeEeeeeeCCC
Q 023057 111 SVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGP 190 (288)
Q Consensus 111 ~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~v~~~~ 190 (288)
++++.+..|...+...|..+|+++|+++|++++++|++++++++|||.+|+|...+.+++++++|||+|||+|.|++|+.
T Consensus 79 ~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~sEp~~gs~~~~~~t~a~~~~~g~~l~G~k~~vs~~~ 158 (376)
T cd01156 79 SVALSYGAHSNLCINQIYRNGSAAQKEKYLPKLISGEHIGALAMSEPNAGSDVVSMKLRAEKKGDRYVLNGSKMWITNGP 158 (376)
T ss_pred hHHHHHHHhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCChhhCeEEEEEeCCEEEEEEEEEEecCCC
Confidence 99988777765556678899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEEEeCCCCCCCceEEEEEeCCCCCeEecccccccCCCCCceeeEEeceeeeCCCCcccCCCccHHHHHHhhhH
Q 023057 191 VAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDL 270 (288)
Q Consensus 191 ~ad~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~~~~v~vp~~~~l~~~~~~~~~~~~~~~~ 270 (288)
.||+++|.++++++.++.++.+|+||++.|||++.+.|+++|++++++++|.|+||+||++++++..+.++......++.
T Consensus 159 ~a~~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~G~~~~~~~~v~~~~v~Vp~~~~lg~~~~g~~~~~~~~~~ 238 (376)
T cd01156 159 DADTLVVYAKTDPSAGAHGITAFIVEKGMPGFSRAQKLDKLGMRGSNTCELVFEDCEVPEENILGGENKGVYVLMSGLDY 238 (376)
T ss_pred cCCEEEEEEEeCCCCCCCceEEEEEcCCCCCeecCCccccccCCCCCceEEEeCceEecHHHcCCCCCchHHHHHHHHhh
Confidence 99999999997654444568899999999999998889999999999999999999999999999988898888888999
Q ss_pred HHHHHHHHHHHHhhcccC
Q 023057 271 ERLVLAAGPLGIMQAPVR 288 (288)
Q Consensus 271 ~r~~~aa~~~G~a~~al~ 288 (288)
.|+.+++.++|+++++++
T Consensus 239 ~r~~~aa~~lG~a~~al~ 256 (376)
T cd01156 239 ERLVLAGGPIGIMQAALD 256 (376)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999999875
No 7
>PRK03354 crotonobetainyl-CoA dehydrogenase; Validated
Probab=100.00 E-value=6.5e-45 Score=332.15 Aligned_cols=256 Identities=24% Similarity=0.425 Sum_probs=229.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhhc-CcccccccccCCCCCcHHHHHHHHhCCCCCCCCCcCCCCCCCCHHHHHHHHHHH
Q 023057 27 STSLLFDDTQLQFKESVGQFARENI-APRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEI 105 (288)
Q Consensus 27 ~~~~~s~~~~~~l~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~l~~~Gl~~~~~pe~~GG~g~~~~~~~~v~e~l 105 (288)
|++.+|++|. ++++.+|+|+++++ .+...+.|+.+.+|. +.|++|++.||+++.+|++|||.|+++.+++.+++++
T Consensus 1 m~~~~~~~~~-~~~~~~r~~~~~~~~~~~~~~~d~~~~~p~--~~~~~l~~~Gl~~~~vP~~~GG~g~~~~~~~~~~~~l 77 (380)
T PRK03354 1 MDFNLNDEQE-LFVAGIRELMASENWEAYFAECDRDSVYPE--RFVKALADMGIDSLLIPEEHGGLDAGFVTLAAVWMEL 77 (380)
T ss_pred CCCCCCHHHH-HHHHHHHHHHHhccCChhHHHHHhhCCCCH--HHHHHHHHCCCCccCCChhhCCCCCCHHHHHHHHHHH
Confidence 4567999999 99999999999876 455567888888999 9999999999999999999999999999999999999
Q ss_pred HhhCCchhhHHHhhhhHHHHHHHhcCCHHHHHhhchhHhcCCeeEEEEecCCCCCCCCCCCeEEEEEeCCeEEEeeEeee
Q 023057 106 SRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMW 185 (288)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~ 185 (288)
+++|+++++.+.++. ....+..+++++|+++||+++++|+.+.++++|||+.|+|...+.|++++++|||+|||+|.|
T Consensus 78 a~~~~s~~~~~~~~~--~~~~l~~~g~~e~~~~~l~~~~~g~~~~~~a~tE~~~gs~~~~~~t~a~~~~~g~~lnG~K~f 155 (380)
T PRK03354 78 GRLGAPTYVLYQLPG--GFNTFLREGTQEQIDKIMAFRGTGKQMWNSAITEPGAGSDVGSLKTTYTRRNGKVYLNGSKCF 155 (380)
T ss_pred HhcCcchHHHHHhcc--cHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCchhhCEEEEEEeCCEEEEeeEEEE
Confidence 999999876655543 245678899999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCCEEEEEEEeCCCCCCCceEEEEEeCCCCCeEecccccccCCCCCceeeEEeceeeeCCCCcccCCCccHHHHH
Q 023057 186 CTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMM 265 (288)
Q Consensus 186 v~~~~~ad~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~~~~v~vp~~~~l~~~~~~~~~~~ 265 (288)
+|++..||+++|.++++.+++...+.+|+||++.+|+++ .+|+++|++++++++|.|+||+||.+++++.+++|+....
T Consensus 156 is~~~~ad~~~v~a~~~~~~~~~~~~~~lv~~~~~gv~~-~~~~~~G~r~~~~~~v~f~~v~Vp~~~~lg~~g~g~~~~~ 234 (380)
T PRK03354 156 ITSSAYTPYIVVMARDGASPDKPVYTEWFVDMSKPGIKV-TKLEKLGLRMDSCCEITFDDVELDEKDMFGREGNGFNRVK 234 (380)
T ss_pred EcCCCcCCEEEEEEEcCCCCCCCceeEEEEECCCCceEe-ccccccCCCCCCeEEEEEccEEecHHHcCCCCChHHHHHH
Confidence 999999999999999754333345778999999999998 4799999999999999999999999999999888887777
Q ss_pred HhhhHHHHHHHHHHHHHhhcccC
Q 023057 266 SGLDLERLVLAAGPLGIMQAPVR 288 (288)
Q Consensus 266 ~~~~~~r~~~aa~~~G~a~~al~ 288 (288)
..++..|+.+++.++|++++++|
T Consensus 235 ~~~~~~r~~~aa~~~G~a~~al~ 257 (380)
T PRK03354 235 EEFDHERFLVALTNYGTAMCAFE 257 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888999999999999999874
No 8
>cd01162 IBD Isobutyryl-CoA dehydrogenase. Isobutyryl-CoA dehydrogenase (IBD) catalyzes the alpha, beta- dehydrogenation of short branched chain acyl-CoA intermediates in valine catabolism. It is predicted to be a homotetramer.
Probab=100.00 E-value=1.2e-44 Score=330.01 Aligned_cols=253 Identities=32% Similarity=0.570 Sum_probs=234.9
Q ss_pred CCHHHHHHHHHHHHHHHHhhcCcccccccccCCCCCcHHHHHHHHhCCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhhCC
Q 023057 31 LFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASG 110 (288)
Q Consensus 31 ~s~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~Gl~~~~~pe~~GG~g~~~~~~~~v~e~l~~~~~ 110 (288)
+++++. ++++.+++|+++++.+...++|+.+.+|. ++|+.|++.||+++.+|++|||.|.++.+.+.++++++++++
T Consensus 1 ~~~~~~-~l~~~~~~~~~~~~~~~a~~~d~~~~~p~--~~~~~l~~~Gl~~~~vP~~~GG~g~~~~~~~~~~~~l~~~~~ 77 (375)
T cd01162 1 LNEEQR-AIQEVARAFAAKEMAPHAADWDQKKHFPV--DVLRKAAELGFGGIYIRDDVGGSGLSRLDASIIFEALSTGCV 77 (375)
T ss_pred CCHHHH-HHHHHHHHHHHHhCCcchhhHHhhCCCCH--HHHHHHHHCCCCCcCCCHhhCCCCCCHHHHHHHHHHHHhhch
Confidence 478888 99999999999999998888888899999 999999999999999999999999999999999999999999
Q ss_pred chhhHHHhhhhHHHHHHHhcCCHHHHHhhchhHhcCCeeEEEEecCCCCCCCCCCCeEEEEEeCCeEEEeeEeeeeeCCC
Q 023057 111 SVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGP 190 (288)
Q Consensus 111 ~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~v~~~~ 190 (288)
++++.+.+|. .+..++..+|+++|+++|++++.+|+.++++++|||++|+|...+.++++++++||+|||+|+|++++.
T Consensus 78 ~~~~~~~~~~-~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~l~G~k~~vs~~~ 156 (375)
T cd01162 78 STAAYISIHN-MCAWMIDSFGNDEQRERFLPDLCTMEKLASYCLTEPGSGSDAAALRTRAVREGDHYVLNGSKAFISGAG 156 (375)
T ss_pred hHHHHHHHhh-hHHHHHHHhCCHHHHHHHHHHHhCCCceeEEEecCCCCCCChhhCEEEEEEeCCEEEEEEEEEEecCCC
Confidence 9987777776 566778889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEEEeCCCCCCCceEEEEEeCCCCCeEecccccccCCCCCceeeEEeceeeeCCCCcccCCCccHHHHHHhhhH
Q 023057 191 VAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDL 270 (288)
Q Consensus 191 ~ad~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~~~~v~vp~~~~l~~~~~~~~~~~~~~~~ 270 (288)
.||+++|.++.+++ +..++.+|+||++.|||++.+.|+++|++++++++|+|+||+||.+++++..+.++......+..
T Consensus 157 ~ad~~~v~a~~~~~-~~~~~~~~lv~~~~~gv~v~~~~~~~g~~~~~~~~l~f~~v~Vp~~~~lg~~~~g~~~~~~~l~~ 235 (375)
T cd01162 157 DSDVYVVMARTGGE-GPKGISCFVVEKGTPGLSFGANEKKMGWNAQPTRAVIFEDCRVPVENRLGGEGQGFGIAMAGLNG 235 (375)
T ss_pred CCCEEEEEEEecCC-CCCceEEEEEeCCCCCeecCCcccccCCCCCCeeEEEECceEecHHHcCCCCCchHHHHHHHHHH
Confidence 99999999997543 33467899999999999999999999999999999999999999999999988888888888899
Q ss_pred HHHHHHHHHHHHhhcccC
Q 023057 271 ERLVLAAGPLGIMQAPVR 288 (288)
Q Consensus 271 ~r~~~aa~~~G~a~~al~ 288 (288)
.|+..++.++|+++++++
T Consensus 236 ~r~~~aa~~lG~a~~al~ 253 (375)
T cd01162 236 GRLNIASCSLGAAQAALD 253 (375)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999999874
No 9
>cd01157 MCAD Medium chain acyl-CoA dehydrogenase. MCADs are mitochondrial beta-oxidation enzymes, which catalyze the alpha,beta dehydrogenation of the corresponding medium chain acyl-CoA by FAD, which becomes reduced. The reduced form of MCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. MCAD is a homotetramer.
Probab=100.00 E-value=1.6e-44 Score=329.52 Aligned_cols=254 Identities=38% Similarity=0.588 Sum_probs=231.0
Q ss_pred CCHHHHHHHHHHHHHHHHhhcCcccccccccCCCCCcHHHHHHHHhCCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhhCC
Q 023057 31 LFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASG 110 (288)
Q Consensus 31 ~s~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~Gl~~~~~pe~~GG~g~~~~~~~~v~e~l~~~~~ 110 (288)
+++++. ++++.+++|+++.+.+...++|+.+.+|. +.|++|++.||+++.+|++|||.|+++.+++.++|++++.|+
T Consensus 1 ~~~~~~-~l~~~~~~~~~~~~~~~~~~~d~~~~~p~--~~~~~l~~~G~~~~~vP~~~GG~g~~~~~~~~v~e~l~~~~~ 77 (378)
T cd01157 1 LTEQQK-EFQETARKFAREEIIPVAAEYDKSGEYPW--PLIKRAWELGLMNTHIPEDCGGLGLGTFDTCLITEELAYGCT 77 (378)
T ss_pred CCHHHH-HHHHHHHHHHHHhcccchHHHHhhCCCCH--HHHHHHHhCCCCCcCCChhhCCCCCCHHHHHHHHHHHHhhhh
Confidence 468888 99999999999999988888888888999 999999999999999999999999999999999999999999
Q ss_pred chhhHHHhhhhHHHHHHHhcCCHHHHHhhchhHhcCCeeEEEEecCCCCCCCCCCCeEEEEEeCCeEEEeeEeeeeeCCC
Q 023057 111 SVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGP 190 (288)
Q Consensus 111 ~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~v~~~~ 190 (288)
++++.+..+. ++...+..+|+++|+++||+.+.+|+.+.++++|||..|+|...+.+++++++|||+|||+|.|+|++.
T Consensus 78 ~~~~~~~~~~-~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~gs~~~~~~t~a~~~~~g~~l~G~k~~vs~~~ 156 (378)
T cd01157 78 GVQTAIEANS-LGQMPVIISGNDEQKKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGG 156 (378)
T ss_pred HHHHHHHhhh-hhHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCchhcCeEEEEEcCCEEEEeeEEEeecCCc
Confidence 8877665543 444556678999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEEEeCCCCC---CCceEEEEEeCCCCCeEecccccccCCCCCceeeEEeceeeeCCCCcccCCCccHHHHHHh
Q 023057 191 VAQTLVVYAKTDIKAG---SKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSG 267 (288)
Q Consensus 191 ~ad~~lv~a~~~~~~~---~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~~~~v~vp~~~~l~~~~~~~~~~~~~ 267 (288)
.||+++|.++++++.+ ..++.+|+||++.||+++.+.|+++|++++++++++|+||+||.+++++.++.++......
T Consensus 157 ~ad~~lv~a~~~~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~G~~~~~s~~~~~~~v~Vp~~~~lg~~~~g~~~~~~~ 236 (378)
T cd01157 157 KANWYFLLARSDPDPKCPASKAFTGFIVEADTPGIQPGRKELNMGQRCSDTRGITFEDVRVPKENVLIGEGAGFKIAMGA 236 (378)
T ss_pred cCCEEEEEEEeCCcccCCCCCceEEEEEcCCCCCeeccCcccccCCCCCCceEEEeccEEECHHHcCCCCCchHHHHHHH
Confidence 9999999999754321 2467899999999999998889999999999999999999999999999888888888888
Q ss_pred hhHHHHHHHHHHHHHhhcccC
Q 023057 268 LDLERLVLAAGPLGIMQAPVR 288 (288)
Q Consensus 268 ~~~~r~~~aa~~~G~a~~al~ 288 (288)
++..|+.+++.++|+++++++
T Consensus 237 ~~~~r~~~aa~~lG~a~~~l~ 257 (378)
T cd01157 237 FDKTRPPVAAGAVGLAQRALD 257 (378)
T ss_pred HhhhHHHHHHHHHHHHHHHHH
Confidence 889999999999999999874
No 10
>cd01160 LCAD Long chain acyl-CoA dehydrogenase. LCAD is an acyl-CoA dehydrogenases (ACAD), which is found in the mitochondria of eukaryotes and in some prokaryotes. It catalyzes the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of LCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. LCAD acts as a homodimer.
Probab=100.00 E-value=1.8e-44 Score=328.53 Aligned_cols=252 Identities=38% Similarity=0.747 Sum_probs=230.1
Q ss_pred HHHHHHHHHHHHHHHHhhcCcccccccccCCCCCcHHHHHHHHhCCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhhCCch
Q 023057 33 DDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSV 112 (288)
Q Consensus 33 ~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~Gl~~~~~pe~~GG~g~~~~~~~~v~e~l~~~~~~~ 112 (288)
++|. ++++.+++|+++.+.+...++|+++.+|+ +.|++|++.||+++.+|++|||.|+++.+.+.++|++++.+.+
T Consensus 1 ~~~~-~l~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~l~~~G~~~~~vP~~~GG~g~~~~~~~~~~e~la~~~~~- 76 (372)
T cd01160 1 EEHD-AFRDVVRRFFAKEVAPFHHEWEKAGEVPR--EVWRKAGEQGLLGVGFPEEYGGIGGDLLSAAVLWEELARAGGS- 76 (372)
T ss_pred ChHH-HHHHHHHHHHHHhCchhHHHHHhhCCCCH--HHHHHHHhCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHhcch-
Confidence 3677 99999999999999888888888888999 9999999999999999999999999999999999999997655
Q ss_pred hhHHHhhhhHHHHHHHhcCCHHHHHhhchhHhcCCeeEEEEecCCCCCCCCCCCeEEEEEeCCeEEEeeEeeeeeCCCCC
Q 023057 113 GLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVA 192 (288)
Q Consensus 113 ~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~v~~~~~a 192 (288)
++.+.+|...+...+..+++++|+++||+++.+|+.++|+++|||..|+|...+.++++++++||+|||+|.|+||+..|
T Consensus 77 ~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~l~G~k~~vs~~~~A 156 (372)
T cd01160 77 GPGLSLHTDIVSPYITRAGSPEQKERVLPQMVAGKKIGAIAMTEPGAGSDLQGIRTTARKDGDHYVLNGSKTFITNGMLA 156 (372)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCchhhCeEEEEEeCCEEEEeeEEEEecCCCcc
Confidence 55666665456677889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEEEeCCCC-CCCceEEEEEeCCCCCeEecccccccCCCCCceeeEEeceeeeCCCCcccCCCccHHHHHHhhhHH
Q 023057 193 QTLVVYAKTDIKA-GSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLE 271 (288)
Q Consensus 193 d~~lv~a~~~~~~-~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~~~~v~vp~~~~l~~~~~~~~~~~~~~~~~ 271 (288)
|+++|.++++++. ++.++.+|+||++.||+++.++|+++|++++++++|+|+||+||++++|+.++.++......++..
T Consensus 157 d~~~v~a~~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~G~~~~~~~~v~~~~v~Vp~~~~lg~~~~g~~~~~~~~~~~ 236 (372)
T cd01160 157 DVVIVVARTGGEARGAGGISLFLVERGTPGFSRGRKLKKMGWKAQDTAELFFDDCRVPAENLLGEENKGFYYLMQNLPQE 236 (372)
T ss_pred CEEEEEEEeCCCCCCCCceEEEEEeCCCCCeecCCccccccCCCCCeEEEEecceEccHHHcCCCCCchHHHHHHHHHHH
Confidence 9999999976532 245788999999999999988899999999999999999999999999999888888888889999
Q ss_pred HHHHHHHHHHHhhcccC
Q 023057 272 RLVLAAGPLGIMQAPVR 288 (288)
Q Consensus 272 r~~~aa~~~G~a~~al~ 288 (288)
|+..++.++|+++++++
T Consensus 237 ~~~~aa~~lG~a~~al~ 253 (372)
T cd01160 237 RLLIAAGALAAAEFMLE 253 (372)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999999874
No 11
>PTZ00461 isovaleryl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=2.3e-44 Score=331.54 Aligned_cols=256 Identities=42% Similarity=0.732 Sum_probs=235.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHhhcCcccccccccCCCCCcHHHHHHHHhCCCCCCCCCcCCCCCCCCHHHHHHHHHH
Q 023057 25 FSSTSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEE 104 (288)
Q Consensus 25 ~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~Gl~~~~~pe~~GG~g~~~~~~~~v~e~ 104 (288)
++..+.+++++. ++++.+++|+++.+.+...+.|+.+.+|+ +.|++|++.||+++.+|++|||.|+++.+.+.++|+
T Consensus 31 ~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~a~~~d~~~~~~~--~~~~~l~~~Gl~~l~vP~~~GG~g~~~~~~~~~~e~ 107 (410)
T PTZ00461 31 FMDLYNPTPEHA-ALRETVAKFSREVVDKHAREDDINMHFNR--DLFKQLGDLGVMGVTVPEADGGAGMDAVAAVIIHHE 107 (410)
T ss_pred ccccCCCCHHHH-HHHHHHHHHHHHhCCccHHHHhhhCCCCH--HHHHHHHHCCCCcccCChhhCCCCCCHHHHHHHHHH
Confidence 444568999999 99999999999999998888888889999 999999999999999999999999999999999999
Q ss_pred HHhhCCchhhHHHhhhhHHHHHHHhcCCHHHHHhhchhHhcCCeeEEEEecCCCCCCCCCCCeEEEEEeCC-eEEEeeEe
Q 023057 105 ISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDG-GYIINGNK 183 (288)
Q Consensus 105 l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~g~d~~~~~~~a~~~~~-g~~l~G~k 183 (288)
+++.++++++.+..|...+...+..+++++|+++||+++.+|+.++++++|||++|+|...+.+++++++| ||+|||+|
T Consensus 108 la~~~~s~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~gg~~L~G~K 187 (410)
T PTZ00461 108 LSKYDPGFCLAYLAHSMLFVNNFYYSASPAQRARWLPKVLTGEHVGAMGMSEPGAGTDVLGMRTTAKKDSNGNYVLNGSK 187 (410)
T ss_pred HHhhCchHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCChHHCeEEEEEcCCCeEEEEeEE
Confidence 99999988777777754455667789999999999999999999999999999999999999999998865 69999999
Q ss_pred eeeeCCCCCCEEEEEEEeCCCCCCCceEEEEEeCCCCCeEecccccccCCCCCceeeEEeceeeeCCCCcccCCCccHHH
Q 023057 184 MWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYV 263 (288)
Q Consensus 184 ~~v~~~~~ad~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~~~~v~vp~~~~l~~~~~~~~~ 263 (288)
.|+||+..||+++|.+++++ ++.+|+||++.|||++.+.|+++|++++++++++|+||+||++++|+.++.++..
T Consensus 188 ~~vs~a~~Ad~~lv~a~~~~-----~~~~flVp~~~~Gv~v~~~~~~~G~r~~~~~~l~f~~v~Vp~~~~lg~~g~g~~~ 262 (410)
T PTZ00461 188 IWITNGTVADVFLIYAKVDG-----KITAFVVERGTKGFTQGPKIDKCGMRASHMCQLFFEDVVVPAENLLGEEGKGMVG 262 (410)
T ss_pred EeECCCccCCEEEEEEEeCC-----ceEEEEEeCCCCCeecCCCCcccCCCCCceEEEEEcceecCHHHhCCCCCccHHH
Confidence 99999999999999998652 4789999999999999999999999999999999999999999999998889888
Q ss_pred HHHhhhHHHHHHHHHHHHHhhcccC
Q 023057 264 MMSGLDLERLVLAAGPLGIMQAPVR 288 (288)
Q Consensus 264 ~~~~~~~~r~~~aa~~~G~a~~al~ 288 (288)
....++..|+..++.++|+++++++
T Consensus 263 ~~~~~~~~r~~~aa~~~G~a~~al~ 287 (410)
T PTZ00461 263 MMRNLELERVTLAAMAVGIAERSVE 287 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888999999999999999999874
No 12
>TIGR03207 cyc_hxne_CoA_dh cyclohexanecarboxyl-CoA dehydrogenase. Cyclohex-1-ene-1carboxyl-CoA is an intermediate in the anaerobic degradation of benzoyl-CoA derived from varioius aromatic compounds, in Rhodopseudomonas palustris but not Thauera aromatica. The aliphatic compound cyclohexanecarboxylate, can be converted to the same intermediate in two steps. The first step is its ligation to coenzyme A. The second is the action of this enzyme, cyclohexanecarboxyl-CoA dehydrogenase.
Probab=100.00 E-value=2.2e-44 Score=327.92 Aligned_cols=253 Identities=32% Similarity=0.556 Sum_probs=231.0
Q ss_pred CCHHHHHHHHHHHHHHHHhhcCcccccccccCCCCCcHHHHHHHHhCCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhhCC
Q 023057 31 LFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASG 110 (288)
Q Consensus 31 ~s~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~Gl~~~~~pe~~GG~g~~~~~~~~v~e~l~~~~~ 110 (288)
+++++. ++++.+++|+++.+.|...+.|+.+.+|. ++|++|++.||+++.+|++|||.|+++.+.+.++|++++.++
T Consensus 1 ~t~~~~-~l~~~~~~~~~~~~~p~~~~~d~~~~~~~--~~~~~l~~~G~~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~ 77 (372)
T TIGR03207 1 LNEDLQ-ALADTARRFARERIAPGFKERDKTRVLDR--ELMRDMGEMGFIGPELPEEHGGLGMGCLAAGVIHEQIARADL 77 (372)
T ss_pred CCHHHH-HHHHHHHHHHHHhcCcchHHHHhhCCCCH--HHHHHHHHCCCCcccCChhHCCCCCCHHHHHHHHHHHHhhCc
Confidence 467888 99999999999999998888888888999 999999999999999999999999999999999999999999
Q ss_pred chhhHHHhhhhHHHHHHHhcCCHHHHHhhchhHhcCCeeEEEEecCCCCCCCCCCCeEEEEEeCCeEEEeeEeeeeeCCC
Q 023057 111 SVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGP 190 (288)
Q Consensus 111 ~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~v~~~~ 190 (288)
++++....+. ++...+..+|+++|+++||+++++|+.++++++|||++|+|...+.+++++++|||+|||+|.|+||+.
T Consensus 78 s~~~~~~~~~-~~~~~l~~~g~~~~~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~lnG~k~~vs~~~ 156 (372)
T TIGR03207 78 SMSYVNLLAS-LNGQILAQHARPEIAKPWLGQLIAGEALFAIALTEPRGGSDAARLRLRAERDGDDYVLNGEKTSISAAD 156 (372)
T ss_pred cHHHHHHhhh-HHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCcChhhCEEEEEEeCCEEEEEEEEEEEcCCC
Confidence 9887544443 555678889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEEEeCCC-CCCCceEEEEEeCCCCCeEecccccccCCCCCceeeEEeceeeeCCCCcccCCCccHHHHHHhhh
Q 023057 191 VAQTLVVYAKTDIK-AGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLD 269 (288)
Q Consensus 191 ~ad~~lv~a~~~~~-~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~~~~v~vp~~~~l~~~~~~~~~~~~~~~ 269 (288)
.||+++|+++++++ .+..++.+|+||++.|||++ ..|+++|++++++++|+|+||+||++++++..+.++......++
T Consensus 157 ~ad~~lv~a~~~~~~~~~~~~~~~lVp~~~~gv~~-~~~~~~G~r~~~~~~v~f~~v~Vp~~~~lg~~~~g~~~~~~~l~ 235 (372)
T TIGR03207 157 QADAAVVFARTGSEAEGARGISAFLVPMDLPGITR-NRFDCHGQRAIGRGSIFFENVRVPADHMLGNEGQGFVQVMQGFD 235 (372)
T ss_pred cCCEEEEEEEcCCCCCCCCceEEEEEcCCCCCeec-CcchhccCCCCCeeEEEECceeccHHHcCCCCChhHHHHHHHHH
Confidence 99999999997542 22346789999999999997 57999999999999999999999999999998888888888899
Q ss_pred HHHHHHHHHHHHHhhcccC
Q 023057 270 LERLVLAAGPLGIMQAPVR 288 (288)
Q Consensus 270 ~~r~~~aa~~~G~a~~al~ 288 (288)
..|+.+++.++|+++++|+
T Consensus 236 ~~r~~~a~~~~G~a~~al~ 254 (372)
T TIGR03207 236 FSRALIGLQVLAVARAALD 254 (372)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999875
No 13
>PRK12341 putative acyl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=3.6e-44 Score=327.43 Aligned_cols=255 Identities=24% Similarity=0.436 Sum_probs=228.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhhcC-cccccccccCCCCCcHHHHHHHHhCCCCCCCCCcCCCCCCCCHHHHHHHHHHH
Q 023057 27 STSLLFDDTQLQFKESVGQFARENIA-PRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEI 105 (288)
Q Consensus 27 ~~~~~s~~~~~~l~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~l~~~Gl~~~~~pe~~GG~g~~~~~~~~v~e~l 105 (288)
|++.+++++. ++++.++.|+++.+. +...++|+.+.+|. ++|++|++.||+++.+|++|||.|.++.+.+.++|++
T Consensus 1 m~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~~~~p~--~~~~~l~~~Gl~~~~vP~~~GG~g~~~~~~~~~~e~l 77 (381)
T PRK12341 1 MDFSLTEEQE-LLLASIRELITRNFPEEYFRTCDENGTYPR--EFMRALADNGISMLGVPEEFGGTPADYVTQMLVLEEV 77 (381)
T ss_pred CCCCCCHHHH-HHHHHHHHHHHHhcCchhHHHHHHhCCCCH--HHHHHHHHCCCCCcCCChhhCCCCcCHHHHHHHHHHH
Confidence 5677999999 999999999999886 45667788889999 9999999999999999999999999999999999999
Q ss_pred HhhCCchhhHHHhhhhHHHHHHHhcCCHHHHHhhchhH-hcCCeeEEEEecCCCCCCCCCCCeEEEEEeCCeEEEeeEee
Q 023057 106 SRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKL-ISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKM 184 (288)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~-~~g~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~ 184 (288)
++.|.+. +.+ .+. .+...+..+|+++|+++|++++ .+|+.+.++++|||+.|||...+.+++++++|||+|||+|+
T Consensus 78 a~~~~~~-~~~-~~~-~~~~~l~~~g~~~q~~~~l~~~~~~g~~~~~~a~tEp~~gsd~~~~~t~a~~~~gg~~lnG~K~ 154 (381)
T PRK12341 78 SKCGAPA-FLI-TNG-QCIHSMRRFGSAEQLRKTAESTLETGDPAYALALTEPGAGSDNNSATTTYTRKNGKVYLNGQKT 154 (381)
T ss_pred hhcChhH-HHH-hhh-hhHHHHHHhCCHHHHHHHhHHHhhCCCeEEEEEecCCCCCCchhhCeeEEEEeCCEEEEEeEEE
Confidence 9999873 333 222 3445677899999999999998 49998899999999999999999999999999999999999
Q ss_pred eeeCCCCCCEEEEEEEeCCCCC-CCceEEEEEeCCCCCeEecccccccCCCCCceeeEEeceeeeCCCCcccCCCccHHH
Q 023057 185 WCTNGPVAQTLVVYAKTDIKAG-SKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYV 263 (288)
Q Consensus 185 ~v~~~~~ad~~lv~a~~~~~~~-~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~~~~v~vp~~~~l~~~~~~~~~ 263 (288)
|+||+..||+++|.++++++.+ ...+++|+||++.|||++ .+|+++|+++++++.|+|+||+||+++++|.++.++..
T Consensus 155 ~is~~~~Ad~~~v~a~~~~~~~~~~~~~~~lV~~~~~gv~~-~~~~~~G~~~~~~~~v~~~~v~Vp~~~~lg~~~~g~~~ 233 (381)
T PRK12341 155 FITGAKEYPYMLVLARDPQPKDPKKAFTLWWVDSSKPGIKI-NPLHKIGWHMLSTCEVYLDNVEVEESDLVGEEGMGFLN 233 (381)
T ss_pred EEcCCccCCEEEEEEEcCCCCCCCCceEEEEEeCCCCceee-cccccccCCCCCceEEEECcEEecHHHcCCCCChHHHH
Confidence 9999999999999999764322 346789999999999999 57999999999999999999999999999998888887
Q ss_pred HHHhhhHHHHHHHHHHHHHhhcccC
Q 023057 264 MMSGLDLERLVLAAGPLGIMQAPVR 288 (288)
Q Consensus 264 ~~~~~~~~r~~~aa~~~G~a~~al~ 288 (288)
....++..|+.+++.++|++++++|
T Consensus 234 ~~~~~~~~r~~~aa~~lG~a~~al~ 258 (381)
T PRK12341 234 VMYNFEMERLINAARSLGFAECAFE 258 (381)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 7778889999999999999999875
No 14
>cd01158 SCAD_SBCAD Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases. Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a mitochondrial beta-oxidation enzyme. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of SCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. This subgroup also contains the eukaryotic short/branched chain acyl-CoA dehydrogenase(SBCAD), the bacterial butyryl-CoA dehydorgenase(BCAD) and 2-methylbutyryl-CoA dehydrogenase, which is involved in isoleucine catabolism. These enzymes are homotetramers.
Probab=100.00 E-value=6.2e-44 Score=324.99 Aligned_cols=252 Identities=45% Similarity=0.774 Sum_probs=233.8
Q ss_pred HHHHHHHHHHHHHHHhhcCcccccccccCCCCCcHHHHHHHHhCCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhhCCchh
Q 023057 34 DTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVG 113 (288)
Q Consensus 34 ~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~Gl~~~~~pe~~GG~g~~~~~~~~v~e~l~~~~~~~~ 113 (288)
++. ++++.+++|+.+.+.+.+.+.|+.+.+|. +.|++|++.||+++.+|+++||.|.++.+.+.++++++++|++++
T Consensus 2 ~~~-~~~~~~~~~~~~~~~~~a~~~d~~~~~~~--~~~~~l~~~Gl~~l~vP~e~GG~g~~~~~~~~v~~~l~~~~~s~~ 78 (373)
T cd01158 2 EHQ-MIRKTVRDFAEKEIAPLAAEMDEKGEFPR--EVIKEMAELGLMGIPIPEEYGGAGLDFLAYAIAIEELAKVDASVA 78 (373)
T ss_pred hHH-HHHHHHHHHHHHhcccchHHHhhcCCCCH--HHHHHHHhCCCCcccCCHHHCCCCCCHHHHHHHHHHHHhhCccHH
Confidence 577 99999999999989888878888888999 999999999999999999999999999999999999999999999
Q ss_pred hHHHhhhhHHHHHHHhcCCHHHHHhhchhHhcCCeeEEEEecCCCCCCCCCCCeEEEEEeCCeEEEeeEeeeeeCCCCCC
Q 023057 114 LSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQ 193 (288)
Q Consensus 114 ~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~v~~~~~ad 193 (288)
+.+.+|...+...+..+++++|+++|++++.+|+.++++++|||.+|++...+.+++++++|||+|||+|.|++|+..||
T Consensus 79 ~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~G~~~~~~a~se~~~gs~~~~~~~~a~~~~~g~~l~G~k~~vsg~~~ad 158 (373)
T cd01158 79 VIVSVHNSLGANPIIKFGTEEQKKKYLPPLATGEKIGAFALSEPGAGSDAAALKTTAKKDGDDYVLNGSKMWITNGGEAD 158 (373)
T ss_pred HHHHHHHhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCCHHHCEeEEEEeCCEEEEeeEEEEEcCCCcCC
Confidence 98888875566788899999999999999999999999999999999998889999999999999999999999999999
Q ss_pred EEEEEEEeCCCCCCCceEEEEEeCCCCCeEecccccccCCCCCceeeEEeceeeeCCCCcccCCCccHHHHHHhhhHHHH
Q 023057 194 TLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERL 273 (288)
Q Consensus 194 ~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~~~~v~vp~~~~l~~~~~~~~~~~~~~~~~r~ 273 (288)
+++|.++.+.+++..++.+|+||.+.|||++.+.|+++|++++++++|+|+||+||++++++.++.++......++..|+
T Consensus 159 ~~lv~a~~~~~~~~~~~~~~lvp~~~~gv~i~~~~~~~G~~g~~s~~v~~~~v~Vp~~~~lg~~~~g~~~~~~~~~~~r~ 238 (373)
T cd01158 159 FYIVFAVTDPSKGYRGITAFIVERDTPGLSVGKKEDKLGIRGSSTTELIFEDVRVPKENILGEEGEGFKIAMQTLDGGRI 238 (373)
T ss_pred EEEEEEEcCCCCCCCceEEEEEcCCCCCeecCCcccccccCCCCceEEEeCcEEecHHHcCCCCCchHHHHHHHHHHHHH
Confidence 99999987554344568899999999999999999999999999999999999999999999988888888888999999
Q ss_pred HHHHHHHHHhhcccC
Q 023057 274 VLAAGPLGIMQAPVR 288 (288)
Q Consensus 274 ~~aa~~~G~a~~al~ 288 (288)
..++.++|+++++++
T Consensus 239 ~~~a~~lG~a~~~l~ 253 (373)
T cd01158 239 GIAAQALGIAQAALD 253 (373)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999874
No 15
>cd01161 VLCAD Very long chain acyl-CoA dehydrogenase. VLCAD is an acyl-CoA dehydrogenase (ACAD), which is found in the mitochondria of eukaryotes and in some bacteria. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. VLCAD acts as a homodimer.
Probab=100.00 E-value=1.4e-43 Score=326.38 Aligned_cols=256 Identities=34% Similarity=0.581 Sum_probs=230.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhhcCcccccccccCCCCCcHHHHHHHHhCCCCCCCCCcCCCCCCCCHHHHHHHHHHHH
Q 023057 27 STSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEIS 106 (288)
Q Consensus 27 ~~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~Gl~~~~~pe~~GG~g~~~~~~~~v~e~l~ 106 (288)
|++.+++++. ++++.+++|+++.+.+. ++++.+.+|. ++|++|++.||+++.+|+++||.|+++.++..++|+++
T Consensus 23 ~~~~~~~~~~-~l~~~~~~~~~~~~~~~--~~d~~~~~~~--~~~~~l~~~Gl~~l~vP~~~GG~g~~~~~~~~v~e~l~ 97 (409)
T cd01161 23 LTEEQTEELN-MLVGPVEKFFEEVNDPA--KNDQLEKIPR--KTLTQLKELGLFGLQVPEEYGGLGLNNTQYARLAEIVG 97 (409)
T ss_pred cCccCCHHHH-HHHHHHHHHHHHhCCch--hhccccCCCH--HHHHHHHhCCCCCCCCChhhCCCCCCHHHHHHHHHHHh
Confidence 4466788998 99999999999998875 3566778999 99999999999999999999999999999999999999
Q ss_pred hhCCchhhHHHhhhhHHHHHHHhcCCHHHHHhhchhHhcCCeeEEEEecCCCCCCCCCCCeEEEEEe--CCeEEEeeEee
Q 023057 107 RASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRV--DGGYIINGNKM 184 (288)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~g~d~~~~~~~a~~~--~~g~~l~G~k~ 184 (288)
+ ++++++.+.+|...+...+..+|+++|+++|++.+++|+.++++++|||+.|+|...+.++++++ ++||+|||+|.
T Consensus 98 ~-~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tEp~~Gs~~~~~~t~a~~~~~g~g~~l~G~K~ 176 (409)
T cd01161 98 M-DLGFSVTLGAHQSIGFKGILLFGTEAQKEKYLPKLASGEWIAAFALTEPSSGSDAASIRTTAVLSEDGKHYVLNGSKI 176 (409)
T ss_pred h-ChHHHHHHHHhhhhhHHHHHHcCCHHHHHHHhHHHhCCCeeEEEEecCCCCCCChhhCeeEEEEcCCCCEEEEEeEEE
Confidence 9 99988887777645555677899999999999999999999999999999999999999999984 45799999999
Q ss_pred eeeCCCCCCEEEEEEEeCC--CCC--CCceEEEEEeCCCCCeEecccccccCCCCCceeeEEeceeeeCCCCcccCCCcc
Q 023057 185 WCTNGPVAQTLVVYAKTDI--KAG--SKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKG 260 (288)
Q Consensus 185 ~v~~~~~ad~~lv~a~~~~--~~~--~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~~~~v~vp~~~~l~~~~~~ 260 (288)
|+||+..||+++|.++++. .++ +.++.+|+||++.|||++.+.|+++|++++++++|+|+||+||++++++..+.+
T Consensus 177 ~vs~~~~Ad~~lv~ar~~~~~~~g~~~~~~~~flvp~~~~gv~~~~~~~~~G~~g~~s~~v~~~~v~Vp~~~~lg~~g~g 256 (409)
T cd01161 177 WITNGGIADIFTVFAKTEVKDATGSVKDKITAFIVERSFGGVTNGPPEKKMGIKGSNTAEVYFEDVKIPVENVLGEVGDG 256 (409)
T ss_pred eecCCCcCCEEEEEEEcCCCCCCCCCCCceEEEEEeCCCCCcccCCcccccCCCCCCceEEEeccEEECHHHcCCCCChH
Confidence 9999999999999998752 112 246789999999999999899999999999999999999999999999998888
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHhhcccC
Q 023057 261 VYVMMSGLDLERLVLAAGPLGIMQAPVR 288 (288)
Q Consensus 261 ~~~~~~~~~~~r~~~aa~~~G~a~~al~ 288 (288)
+......++..|+.+++.++|++++++|
T Consensus 257 ~~~~~~~l~~~r~~~aa~~lG~a~~al~ 284 (409)
T cd01161 257 FKVAMNILNNGRFGMGAALIGTMKRCIE 284 (409)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 8888889999999999999999999874
No 16
>PLN02526 acyl-coenzyme A oxidase
Probab=100.00 E-value=4.3e-43 Score=323.08 Aligned_cols=255 Identities=30% Similarity=0.504 Sum_probs=230.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhhcCcccccccccCCCCCcHHHHHHHHhCCCCCCCCCcCCCCCCCCHHHHHHHHHHH
Q 023057 26 SSTSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEI 105 (288)
Q Consensus 26 ~~~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~Gl~~~~~pe~~GG~g~~~~~~~~v~e~l 105 (288)
+|+..+++++. ++.+.+++|+++++.+...+.++...+|. ++|++|++.||+++.+ ++|||.|+++.+++.++|++
T Consensus 24 ~~~~~~t~~~~-~l~~~~~~f~~~~~~~~~~~~~~~~~~p~--~~~~~l~~~G~~~~~v-~~~GG~G~~~~~~~~~~e~l 99 (412)
T PLN02526 24 QFDDLLTPEEQ-ALRKRVRECMEKEVAPIMTEYWEKAEFPF--HIIPKLGSLGIAGGTI-KGYGCPGLSITASAIATAEV 99 (412)
T ss_pred ccccCCCHHHH-HHHHHHHHHHHHhcccchHHHHHhCCCCH--HHHHHHHHCCCCcCcc-cccCCCCcCHHHHHHHHHHH
Confidence 36667899999 99999999999999887766666778998 9999999999999999 99999999999999999999
Q ss_pred HhhCCchhhHHHhhhhHHHHHHHhcCCHHHHHhhchhHhcCCeeEEEEecCCCCCCCCCCCeEEEEEeCCeEEEeeEeee
Q 023057 106 SRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMW 185 (288)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~ 185 (288)
++.|++++..+..|...+...+..+|+++|+++|++++++|+.+++++++||+.|+|...+.+++++++|||+|||+|.|
T Consensus 100 a~~~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~gg~~lnG~K~~ 179 (412)
T PLN02526 100 ARVDASCSTFILVHSSLAMLTIALCGSEAQKQKYLPSLAQLDTVACWALTEPDYGSDASSLNTTATKVEGGWILNGQKRW 179 (412)
T ss_pred HhhCchHHHHHHHhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCChhhCeeEEEEECCEEEEEEEEee
Confidence 99999887666666545666788999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCCEEEEEEEeCCCCCCCceEEEEEeCCCCCeEecccccccCCCCCceeeEEeceeeeCCCCcccCCCccHHHHH
Q 023057 186 CTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMM 265 (288)
Q Consensus 186 v~~~~~ad~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~~~~v~vp~~~~l~~~~~~~~~~~ 265 (288)
++|+..||+++|.++++++ .++.+|+||++.|||++.+.|+++|++++++++|+|+||+||++++++..+ ++....
T Consensus 180 vs~~~~Ad~~lv~a~~~~~---~~~~~flV~~~~~Gv~~~~~~~~~G~r~t~s~~v~f~~v~Vp~~~~l~~~~-~~~~~~ 255 (412)
T PLN02526 180 IGNSTFADVLVIFARNTTT---NQINGFIVKKGAPGLKATKIENKIGLRMVQNGDIVLKDVFVPDEDRLPGVN-SFQDTN 255 (412)
T ss_pred ecCCCccCEEEEEEEeCCC---CCeEEEEEcCCCCCeEcCCCCCccCcCCCCeeEEEEeeEEECHHHhCCCcc-cHHHHH
Confidence 9999999999999997532 357899999999999999999999999999999999999999999997653 666677
Q ss_pred HhhhHHHHHHHHHHHHHhhcccC
Q 023057 266 SGLDLERLVLAAGPLGIMQAPVR 288 (288)
Q Consensus 266 ~~~~~~r~~~aa~~~G~a~~al~ 288 (288)
..++.+|+.+++.++|++++++|
T Consensus 256 ~~~~~~r~~~aa~~lG~a~~al~ 278 (412)
T PLN02526 256 KVLAVSRVMVAWQPIGISMGVYD 278 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999999874
No 17
>TIGR03203 pimD_small pimeloyl-CoA dehydrogenase, small subunit. Members of this protein family are the PimD proteins of species such as Rhodopseudomonas palustris, Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.
Probab=100.00 E-value=2.8e-43 Score=320.74 Aligned_cols=252 Identities=24% Similarity=0.349 Sum_probs=221.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhcCcccc--cccccCCCCCcHHHHHHHHhCCCCCCCCCcCCCCCCCCHHHHHHHHHHHH
Q 023057 29 SLLFDDTQLQFKESVGQFARENIAPRAA--NIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEIS 106 (288)
Q Consensus 29 ~~~s~~~~~~l~~~~~~~~~~~~~~~~~--~~d~~~~~~~~~~~~~~l~~~Gl~~~~~pe~~GG~g~~~~~~~~v~e~l~ 106 (288)
+.++++|. ++++.+++|+++.+.+... ..|+.+.+|. ++|++|++.||+++.+|++|||.|+++.+.+.++|+++
T Consensus 2 ~~~~~eq~-~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~l~e~G~~~l~vPe~~GG~G~~~~~~~~v~eel~ 78 (378)
T TIGR03203 2 FDLSEEQR-LLKESVEGLLKTSYDFDSRKKYQKEKGGWSK--AVWGKLAEQGLLGLPFSEADGGFGAGSVETMIVMEALG 78 (378)
T ss_pred CCCCHHHH-HHHHHHHHHHHhhCCHHHHHHHHhccCCCCH--HHHHHHHHCCCcccccchhcCCCCCCHHHHHHHHHHHh
Confidence 45789999 9999999999998876543 2467788999 99999999999999999999999999999999999999
Q ss_pred hhCCchhhHHHhhhhHHHHHHHhcCCHHHHHhhchhHhcCCeeEEEEecCCCCCCCCCCCeEEEEEeCCeEEEeeEeeee
Q 023057 107 RASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWC 186 (288)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~v 186 (288)
+.+.+.++ ..+..++..++..+|+++||++|||++++|+.++++++|||+.|||...+.|++++++|+|+|||+|.||
T Consensus 79 ~~~~~~~~--~~~~~~~~~~l~~~g~~~qk~~~L~~l~~G~~~~a~a~tEp~~gsd~~~~~t~a~~~g~~~~l~G~K~~v 156 (378)
T TIGR03203 79 KALVLEPY--LATVVIGGGFLRHAGSAAQKAAHLPGIIDGSKTFAFAQLEKNSRYDLGDVSTTAKKTGDGWVIDGEKFVV 156 (378)
T ss_pred CcccchHH--HHHHHHHHHHHHHcCCHHHHHHHHHHHhCCChhheeeecCCCCCCCcccceEEEEEcCCEEEEEeEEEEe
Confidence 98765443 2222244567888999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCEEEEEEEeCCCC-CCCceEEEEEeCCCCCeEecccccccCCCCCceeeEEeceeeeCCCCcccCCCccHHHHH
Q 023057 187 TNGPVAQTLVVYAKTDIKA-GSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMM 265 (288)
Q Consensus 187 ~~~~~ad~~lv~a~~~~~~-~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~~~~v~vp~~~~l~~~~~~~~~~~ 265 (288)
+++..||+++|+++++++. +++++++|+||++.||+++.+.+.+.| .++++|+|+||+||+++++|.++.|+..+.
T Consensus 157 t~a~~Ad~~lv~ar~~~~~~~~~g~~~flV~~~~~Gv~~~~~~~~~g---~~~~~l~fd~v~vp~~~~lg~~~~g~~~~~ 233 (378)
T TIGR03203 157 LNGETADTLIVTARTKGARRDRTGIGVFLVPAGAKGVTIKGYPTQDG---LHAADITFTGVVVGADAAIGDPENALPLIE 233 (378)
T ss_pred cCCccCCEEEEEEecCCCCCCCCceEEEEEECCCCCceeccccccCC---CceeeEEECCCcccHHhhcCCcchHHHHHH
Confidence 9999999999999975432 345789999999999999965555554 456899999999999999999888999999
Q ss_pred HhhhHHHHHHHHHHHHHhhcccC
Q 023057 266 SGLDLERLVLAAGPLGIMQAPVR 288 (288)
Q Consensus 266 ~~~~~~r~~~aa~~~G~a~~al~ 288 (288)
..++..|+.+++.++|++++++|
T Consensus 234 ~~l~~~r~~~aa~~~G~a~~al~ 256 (378)
T TIGR03203 234 RVVDDARAALCAEAVGLMDESLK 256 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999875
No 18
>PRK09463 fadE acyl-CoA dehydrogenase; Reviewed
Probab=100.00 E-value=4.1e-43 Score=338.46 Aligned_cols=277 Identities=23% Similarity=0.395 Sum_probs=237.7
Q ss_pred cccccccccccccccccccCCCCC-CCCHHHHHHHHHH-HHHHHHhhcCcccccccccCCCCCcHHHHHHHHhCCCCCCC
Q 023057 6 GARSLCASFFTKKQKHSAAFSSTS-LLFDDTQLQFKES-VGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGIT 83 (288)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~-~~s~~~~~~l~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~Gl~~~~ 83 (288)
|..++-.++|.++++++..+.++. .+|+|++ ++++. +++|++. .. ...+.++.+.+|+ ++|+.|++.||+++.
T Consensus 53 g~~~~~~~lF~G~~~~~~l~~~p~~~Ls~ee~-~~~d~~v~~l~~~-~~-~~~~~~~~~~~P~--e~w~~L~e~G~~gl~ 127 (777)
T PRK09463 53 GTVWWEGELFSGKPDWKKLLNYPKPTLTAEEQ-AFLDGPVEELCRM-VN-DWQITHELADLPP--EVWQFIKEHGFFGMI 127 (777)
T ss_pred CCchhhhhhcCCCCChHHhcCCCCCCCCHHHH-HHHHHHHHHHHHH-HH-HHHHhccccCCCH--HHHHHHHHCCCCcCC
Confidence 677888899999999999888775 4899999 99996 8877653 21 1122234478999 999999999999999
Q ss_pred CCcCCCCCCCCHHHHHHHHHHHHhhCCchhhHHHhhhhHH-HHHHHhcCCHHHHHhhchhHhcCCeeEEEEecCCCCCCC
Q 023057 84 APQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLC-INQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSD 162 (288)
Q Consensus 84 ~pe~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~~~~~~~-~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~g~d 162 (288)
+|++|||.|++..+.+.++|++++++++++..+..|..++ ..+|..+|+++||++|||++++|+.++|+++|||++|||
T Consensus 128 IPeeyGG~Gls~~~~a~v~eeLg~~~~s~a~~~~v~~slg~~~lL~~~GteeQK~~yLp~La~Ge~i~afAlTEP~aGSD 207 (777)
T PRK09463 128 IPKEYGGLEFSAYAHSRVLQKLASRSGTLAVTVMVPNSLGPGELLLHYGTDEQKDHYLPRLARGEEIPCFALTSPEAGSD 207 (777)
T ss_pred CchhhCCCCCCHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCceeEEEecCCCcCCC
Confidence 9999999999999999999999999988776666665454 357889999999999999999999999999999999999
Q ss_pred CCCCeEEE-----EEeCC---eEEEeeEeeeeeCCCCCCEEEEEEEe-CCC-----CCCCceEEEEEeCCCCCeEecccc
Q 023057 163 VVGMKCKA-----DRVDG---GYIINGNKMWCTNGPVAQTLVVYAKT-DIK-----AGSKGITAFIIEKGMPGFSTAQKL 228 (288)
Q Consensus 163 ~~~~~~~a-----~~~~~---g~~l~G~k~~v~~~~~ad~~lv~a~~-~~~-----~~~~~~~~~lv~~~~~gv~~~~~~ 228 (288)
...+.+++ +++++ ||+|||+|.|||+++.||+++|++++ +++ .++.++++|+||++.|||++.+.+
T Consensus 208 aa~i~Tta~~~~a~~dGd~~~g~vLNG~K~~IT~a~~Ad~l~V~ar~~dp~~~~g~~~~~Git~fLVp~d~pGV~ig~~~ 287 (777)
T PRK09463 208 AGSIPDTGVVCKGEWQGEEVLGMRLTWNKRYITLAPIATVLGLAFKLYDPDGLLGDKEDLGITCALIPTDTPGVEIGRRH 287 (777)
T ss_pred cccccccceeeeeeecCCcccceEEEEEEEeeCCCCccCEEEEEEEecCcccccCCCCCCceEEEEEECCCCCeEecccc
Confidence 98877543 44555 69999999999999999999998885 322 124578999999999999998889
Q ss_pred cccCCCCCceeeEEeceeeeCCCCcccCC---CccHHHHHHhhhHHH-HHHHHHHHHHhhcccC
Q 023057 229 DKLGMRGSDTCELVFENCFVPNENVLGQE---GKGVYVMMSGLDLER-LVLAAGPLGIMQAPVR 288 (288)
Q Consensus 229 ~~~Gl~~~~~~~v~~~~v~vp~~~~l~~~---~~~~~~~~~~~~~~r-~~~aa~~~G~a~~al~ 288 (288)
+++|++ ..++.++|+||+||.+++||.. +.|+..+...++.+| +.+++.++|+++++++
T Consensus 288 ~~lG~r-~~~g~v~fddV~VP~d~lLG~~~~~G~G~~~l~~~L~~gR~i~laA~avG~ar~al~ 350 (777)
T PRK09463 288 FPLNVP-FQNGPTRGKDVFIPLDYIIGGPKMAGQGWRMLMECLSVGRGISLPSNSTGGAKLAAL 350 (777)
T ss_pred cccCcc-cccceEEeeeeecCHHHhcccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998 5688999999999999999874 789999999999999 8999999999999874
No 19
>PRK13026 acyl-CoA dehydrogenase; Reviewed
Probab=100.00 E-value=3.3e-42 Score=331.12 Aligned_cols=277 Identities=23% Similarity=0.332 Sum_probs=234.5
Q ss_pred cccccccccccccccccccCCCCC-CCCHHHHHHHHH-HHHHHHHhhcCcccccccccCCCCCcHHHHHHHHhCCCCCCC
Q 023057 6 GARSLCASFFTKKQKHSAAFSSTS-LLFDDTQLQFKE-SVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGIT 83 (288)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~-~~s~~~~~~l~~-~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~Gl~~~~ 83 (288)
|..++-.++|.++++++.++..+. .+++|++ .+.+ .++.+++ .+.+. ...++.+.+|+ ++|+.|++.||+++.
T Consensus 52 ~~~~~~~~lf~G~~~~~~l~~~p~~~l~~eeq-~fl~~~v~~l~~-~~~e~-~~~~~~~~~P~--evw~~Lae~Gl~gl~ 126 (774)
T PRK13026 52 GDVWWEGELFSGKPDWQKLHSYPKPTLTAEEQ-AFIDNEVETLLT-MLDDW-DIVQNRKDLPP--EVWDYLKKEGFFALI 126 (774)
T ss_pred CCcchhhhhcCCCCChhhcCCCCccccCHHHH-HHHHHHHHHHHh-hhhhh-hhhhhhcCCCH--HHHHHHHHCCCCcCC
Confidence 566777889999999999887775 4899888 6666 6777754 22222 23355688999 999999999999999
Q ss_pred CCcCCCCCCCCHHHHHHHHHHHHhhCCchhhHHHhhhhHH-HHHHHhcCCHHHHHhhchhHhcCCeeEEEEecCCCCCCC
Q 023057 84 APQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLC-INQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSD 162 (288)
Q Consensus 84 ~pe~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~~~~~~~-~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~g~d 162 (288)
+|++|||.|++..+.+.++|++++++.+++..+.+|..++ ..+|..+|+++|+++|||++++|+.++|+++|||++|||
T Consensus 127 IPeeyGGlG~s~~~~a~V~eela~~~~s~a~~~~v~~slg~~~lL~~~GTeEQK~~yLP~LAsGe~i~afAlTEP~aGSD 206 (774)
T PRK13026 127 IPKEYGGKGFSAYANSTIVSKIATRSVSAAVTVMVPNSLGPGELLTHYGTQEQKDYWLPRLADGTEIPCFALTGPEAGSD 206 (774)
T ss_pred CChhhCCCCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhCCHHHHHhhhHHHhCCCeEEEEEecCCCCCCc
Confidence 9999999999999999999999999888776666665444 457889999999999999999999999999999999999
Q ss_pred CCCCeEEEE-----EeCC---eEEEeeEeeeeeCCCCCCEEEEEEEe-CCC-----CCCCceEEEEEeCCCCCeEecccc
Q 023057 163 VVGMKCKAD-----RVDG---GYIINGNKMWCTNGPVAQTLVVYAKT-DIK-----AGSKGITAFIIEKGMPGFSTAQKL 228 (288)
Q Consensus 163 ~~~~~~~a~-----~~~~---g~~l~G~k~~v~~~~~ad~~lv~a~~-~~~-----~~~~~~~~~lv~~~~~gv~~~~~~ 228 (288)
...+.++++ +++| ||+|||+|.|||+++.||+++|.++. +++ +++.++++|+||++.|||++.+.+
T Consensus 207 aasi~Ttav~t~a~~dGd~~~gwvLNG~K~~IT~A~~Ad~~~v~ar~~dpd~~~g~~~~~GiT~fLVp~d~pGV~ig~~~ 286 (774)
T PRK13026 207 AGAIPDTGIVCRGEFEGEEVLGLRLTWDKRYITLAPVATVLGLAFKLRDPDGLLGDKKELGITCALIPTDHPGVEIGRRH 286 (774)
T ss_pred hhcccceeeeeeeeecCCccccEEEEEEEEeecCccccCEEEEEEEeeCccccccCCCCCceEEEEEECCCCCeEeeccc
Confidence 988876554 4566 69999999999999999999877763 332 134578999999999999998889
Q ss_pred cccCCCCCceeeEEeceeeeCCCCcccCC---CccHHHHHHhhhHHH-HHHHHHHHHHhhcccC
Q 023057 229 DKLGMRGSDTCELVFENCFVPNENVLGQE---GKGVYVMMSGLDLER-LVLAAGPLGIMQAPVR 288 (288)
Q Consensus 229 ~~~Gl~~~~~~~v~~~~v~vp~~~~l~~~---~~~~~~~~~~~~~~r-~~~aa~~~G~a~~al~ 288 (288)
+++|++.. ++.++|+||+||.+++||.+ ++|+..+...++.+| +.+++.++|+++++++
T Consensus 287 ~~lG~~~~-~g~v~fdDV~VP~d~lLG~~~~~G~G~~~l~~~L~~gR~i~laA~a~G~A~~al~ 349 (774)
T PRK13026 287 NPLGMAFM-NGTTRGKDVFIPLDWIIGGPDYAGRGWRMLVECLSAGRGISLPALGTASGHMATR 349 (774)
T ss_pred cccccCcc-cceEEEeeeEccHHHhcCCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998864 58999999999999999975 789999999999999 8999999999999874
No 20
>TIGR03204 pimC_large pimeloyl-CoA dehydrogenase, large subunit. Members of this protein family are the PimC proteins of species such as Rhodopseudomonas palustris and Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.
Probab=100.00 E-value=8.4e-41 Score=306.29 Aligned_cols=253 Identities=26% Similarity=0.434 Sum_probs=215.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhcCcccccc-cccCCCCC--cHHHHHHHHhCCCCCCCCCcCCCCCCCCHHHHHHHHHHH
Q 023057 29 SLLFDDTQLQFKESVGQFARENIAPRAANI-DQSNSFPQ--DVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEI 105 (288)
Q Consensus 29 ~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~-d~~~~~~~--~~~~~~~l~~~Gl~~~~~pe~~GG~g~~~~~~~~v~e~l 105 (288)
+.++++|. +|++++++|+++++.+...+. .+...+|. ..++|+++.++||+++.+|++|||.|+++.+.+.++|++
T Consensus 2 ~~lteeq~-~l~~~~r~f~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~e~G~~gl~vPe~~GG~G~~~~~~~~v~eel 80 (395)
T TIGR03204 2 LAFSKEEQ-AFRDEVRSFFKDNVPADTRQKLVEGRHLTKDEMVTWWRILNKKGWGVSHWPKQYGGTGWTSVQHYIFNEEL 80 (395)
T ss_pred CCCCHHHH-HHHHHHHHHHHHhCChhhhhhhhccCCCChHHHHHHHHHHHhCCCCCCCCCcccCCCCCCHHHHHHHHHHH
Confidence 56899999 999999999999988775442 22333442 127999999999999999999999999999999999999
Q ss_pred HhhCCchhhHHHhhhhHHHHHHHhcCCHHHHHhhchhHhcCCeeEEEEecCCCCCCCCCCCeEEEEEeCCeEEEeeEeee
Q 023057 106 SRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMW 185 (288)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~ 185 (288)
++++.++++...++ ++...+..+|+++|+++|||++++|+.++++++|||+.|||...+.|++++++|+|+|||+|.|
T Consensus 81 g~~~~~~~~~~~~~--~~~~~l~~~g~~~q~~~~L~~i~~G~~~~~~a~tEp~~gsd~~~~~t~a~~~g~~~~LnG~K~~ 158 (395)
T TIGR03204 81 QSAPAPQPLAFGVS--MVGPVIYTFGNEEQKKRFLPRIANVDDWWCQGFSEPGSGSDLASLKTKAEKKGDKWIINGQKTW 158 (395)
T ss_pred HhcCCCccchhHhH--hhHHHHHHhCCHHHHHHHHHHHhCCchheEeEecCCCCCCChhhceEEEEEcCCEEEEeeEEEe
Confidence 99998887644333 3344678889999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCCEEEEEEEeCCCC-CCCceEEEEEeCCCCCeEecccccccCCCCCceeeEEeceeeeCCCCcccCCCccHHHH
Q 023057 186 CTNGPVAQTLVVYAKTDIKA-GSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVM 264 (288)
Q Consensus 186 v~~~~~ad~~lv~a~~~~~~-~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~~~~v~vp~~~~l~~~~~~~~~~ 264 (288)
++++..||+++|.+++++++ +.+++++|+||.+.|||++.+.....| +.++++|+|+||+||++++++..+.++...
T Consensus 159 vt~a~~Ad~~lv~a~~~~~~~~~~g~~~flV~~~~~Gv~~~~~~~~~~--~~~~~~v~f~~v~Vp~~~~lg~~~~g~~~~ 236 (395)
T TIGR03204 159 TTLAQHADWIFCLCRTDPTAKKQMGISFILVDMKSKGITVRPIQTIDG--GVEVNEVFFDDVEVPYENLVGEENKGWDYA 236 (395)
T ss_pred ecCCccCCeEEEEEEeCCCCCCCCCeEEEEEeCCCCCeEecChhhccC--CCceeEEEEcceEEcHHHcCCCCCchHHHH
Confidence 99999999999999975321 235688999999999999955444333 678999999999999999999888899988
Q ss_pred HHhhhHHHHHHHHHHHHHhhcccC
Q 023057 265 MSGLDLERLVLAAGPLGIMQAPVR 288 (288)
Q Consensus 265 ~~~~~~~r~~~aa~~~G~a~~al~ 288 (288)
...++..|+..++ +|+++++++
T Consensus 237 ~~~l~~~r~g~aa--~g~a~~~l~ 258 (395)
T TIGR03204 237 KFLLGNERTGIAR--VGVSKERIR 258 (395)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHH
Confidence 9999999998876 799888764
No 21
>cd01155 ACAD_FadE2 Acyl-CoA dehydrogenases similar to fadE2. FadE2-like Acyl-CoA dehydrogenase (ACAD). Acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACAD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. ACAD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=100.00 E-value=5.4e-41 Score=307.74 Aligned_cols=253 Identities=24% Similarity=0.365 Sum_probs=214.5
Q ss_pred HHHHHHHHHHHHHHhhcCcccccccccC-------CCCC--cHHHHHHHHhCCCCCCCCCcCCCCCCCCHHHHHHHHHHH
Q 023057 35 TQLQFKESVGQFARENIAPRAANIDQSN-------SFPQ--DVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEI 105 (288)
Q Consensus 35 ~~~~l~~~~~~~~~~~~~~~~~~~d~~~-------~~~~--~~~~~~~l~~~Gl~~~~~pe~~GG~g~~~~~~~~v~e~l 105 (288)
++ +|++++|+|+++++.|...++++.+ .+|+ ..++|+.+++.||+++.+|++|||.|+++.+.+.++|++
T Consensus 3 ~~-~~~~~~r~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~P~~~GG~g~~~~~~~~v~e~l 81 (394)
T cd01155 3 AQ-ELRARVKAFMEEHVYPAEQEFLEYYAEGGDRWWTPPPIIEKLKAKAKAEGLWNLFLPEVSGLSGLTNLEYAYLAEET 81 (394)
T ss_pred HH-HHHHHHHHHHHHhcCccHHHHHhhcccccccccCCchhHHHHHHHHHhCCCCCCCCChhhCCCCcCHHHHHHHHHHH
Confidence 45 8999999999999998766665321 1232 128999999999999999999999999999999999999
Q ss_pred HhhC-CchhhHHHhhhhHHHHHHHhcCCHHHHHhhchhHhcCCeeEEEEecCCC-CCCCCCCCeEEEEEeCCeEEEeeEe
Q 023057 106 SRAS-GSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPN-AGSDVVGMKCKADRVDGGYIINGNK 183 (288)
Q Consensus 106 ~~~~-~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~-~g~d~~~~~~~a~~~~~g~~l~G~k 183 (288)
++++ .+.++....+...+...+..+|+++|+++||+++++|+.++++++|||. .|+|...+.+++++++|||+|||+|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tE~~~~gsd~~~~~t~a~~~~~g~~LnG~k 161 (394)
T cd01155 82 GRSFFAPEVFNCQAPDTGNMEVLHRYGSEEQKKQWLEPLLDGKIRSAFAMTEPDVASSDATNIECSIERDGDDYVINGRK 161 (394)
T ss_pred hhhcccchheeecccccccHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEeCCCCCCCCchhhCEEEEEEECCEEEEEEEE
Confidence 9986 3333222222212345788999999999999999999999999999997 6789888999999999999999999
Q ss_pred eeeeCCCC--CCEEEEEEEeCCCC--CCCceEEEEEeCCCCCeEecccccccCCCC--CceeeEEeceeeeCCCCcccCC
Q 023057 184 MWCTNGPV--AQTLVVYAKTDIKA--GSKGITAFIIEKGMPGFSTAQKLDKLGMRG--SDTCELVFENCFVPNENVLGQE 257 (288)
Q Consensus 184 ~~v~~~~~--ad~~lv~a~~~~~~--~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~--~~~~~v~~~~v~vp~~~~l~~~ 257 (288)
.|+||+.+ +|+++|.+++++++ ++.++.+|+||++.||+++.++|+++|+++ +++++|.|+||+||++++++..
T Consensus 162 ~~vs~~~~~~a~~~~v~a~~~~~~~~~~~~~~~flVp~~~~Gv~i~~~~~~~G~r~~~t~s~~v~f~dv~Vp~~~~lg~~ 241 (394)
T cd01155 162 WWSSGAGDPRCKIAIVMGRTDPDGAPRHRQQSMILVPMDTPGVTIIRPLSVFGYDDAPHGHAEITFDNVRVPASNLILGE 241 (394)
T ss_pred EEEcCCCCCCCCEEEEEEEeCCCcCCCCCceEEEEEeCCCCCeEeeccccccCCCCCCCCeeEEEEccEEecHHHcCCCC
Confidence 99999954 78999999875431 234688999999999999988899999997 6789999999999999999988
Q ss_pred CccHHHHHHhhhHHHHHHHHHHHHHhhcccC
Q 023057 258 GKGVYVMMSGLDLERLVLAAGPLGIMQAPVR 288 (288)
Q Consensus 258 ~~~~~~~~~~~~~~r~~~aa~~~G~a~~al~ 288 (288)
++++......++..|+..++.++|++++++|
T Consensus 242 ~~g~~~~~~~~~~~r~~~~a~~lG~a~~al~ 272 (394)
T cd01155 242 GRGFEIAQGRLGPGRIHHCMRLIGAAERALE 272 (394)
T ss_pred ChHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 8898888888999999999999999999874
No 22
>cd01153 ACAD_fadE5 Putative acyl-CoA dehydrogenases similar to fadE5. Putative acyl-CoA dehydrogenase (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=100.00 E-value=7.3e-40 Score=301.34 Aligned_cols=244 Identities=30% Similarity=0.513 Sum_probs=215.1
Q ss_pred HHHHHHHHHhhcCcccccccccCC--------CCCc-HHHHHHHHhCCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhhCC
Q 023057 40 KESVGQFARENIAPRAANIDQSNS--------FPQD-VNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASG 110 (288)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~d~~~~--------~~~~-~~~~~~l~~~Gl~~~~~pe~~GG~g~~~~~~~~v~e~l~~~~~ 110 (288)
++.+++|+.+.+.|.+.++|++.. +|+. .++|++|++.||+++.+|++|||.|.++.++..+.|+++++|+
T Consensus 2 ~~~~~~~~~~~~~~~a~~~d~~~~~~~~~~~~~p~~~~e~~~~l~~~Gl~~~~vP~e~GG~g~~~~~~~~~~e~l~~~~~ 81 (407)
T cd01153 2 LEEVARLAENVLAPLNADGDREGPVFDDGRVVVPPPFKEALDAFAEAGWMALGVPEEYGGQGLPITVYSALAEIFSRGDA 81 (407)
T ss_pred hHHHHHHHHHHhhhhHHhHhccCCcccCCceEcChhHHHHHHHHHHCCCCCCCCccccCCCCCCHHHHHHHHHHHHhhhH
Confidence 578899999999988777776653 8831 2789999999999999999999999999999999999999999
Q ss_pred chhhHHHhhhhHHHHHHHhcCCHHHHHhhchhHhcCCeeEEEEecCCCCCCCCCCCeEEEEEe-CCeEEEeeEeeeeeCC
Q 023057 111 SVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRV-DGGYIINGNKMWCTNG 189 (288)
Q Consensus 111 ~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~g~d~~~~~~~a~~~-~~g~~l~G~k~~v~~~ 189 (288)
++++.+..|. +...+..+|+++|+++|++++.+|+.++|+++|||++|||...+.++++++ +|||+|||+|.|+||+
T Consensus 82 s~~~~~~~~~--~~~~l~~~g~~~~~~~~l~~i~~G~~~~~~a~tEp~~gsd~~~~~t~a~~~~~ggy~l~G~K~~is~~ 159 (407)
T cd01153 82 PLMYASGTQG--AAATLLAHGTEAQREKWIPRLAEGEWTGTMCLTEPDAGSDLGALRTKAVYQADGSWRINGVKRFISAG 159 (407)
T ss_pred HHHHHHHHhH--HHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCCcccceEEEEECCCCcEEEeeEEEEEeCC
Confidence 9888766554 345677889999999999999999999999999999999999999999998 5679999999999999
Q ss_pred CCC----CEEEEEEEeCCC-CCCCceEEEEEeCCC-----CCeEecccccccCCCCCceeeEEeceeeeCCCCcccCCCc
Q 023057 190 PVA----QTLVVYAKTDIK-AGSKGITAFIIEKGM-----PGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGK 259 (288)
Q Consensus 190 ~~a----d~~lv~a~~~~~-~~~~~~~~~lv~~~~-----~gv~~~~~~~~~Gl~~~~~~~v~~~~v~vp~~~~l~~~~~ 259 (288)
..| ++++|.++++++ ++..++.+|+||++. |||++.+.|+++|++++++++|.|+||+|| +++.++.
T Consensus 160 ~~a~~~~~~~~v~a~~~~~~~~~~~~~~flVp~~~~~~~~~gv~i~~~~~~~G~r~t~s~~v~f~~v~Vp---~lg~~~~ 236 (407)
T cd01153 160 EHDMSENIVHLVLARSEGAPPGVKGLSLFLVPKFLDDGERNGVTVARIEEKMGLHGSPTCELVFDNAKGE---LIGEEGM 236 (407)
T ss_pred CcccccccEEEEEEeCCCCCCCCCceEEEEEeccCcCCCCCCeEeccchhccCCCCCCeEEEEEcCEEEe---eeCCCCc
Confidence 876 577888886532 233468899999987 899999999999999999999999999999 8888888
Q ss_pred cHHHHHHhhhHHHHHHHHHHHHHhhcccC
Q 023057 260 GVYVMMSGLDLERLVLAAGPLGIMQAPVR 288 (288)
Q Consensus 260 ~~~~~~~~~~~~r~~~aa~~~G~a~~al~ 288 (288)
++......++..|+.+++.++|+++++++
T Consensus 237 g~~~~~~~l~~~r~~~aa~~lG~a~~al~ 265 (407)
T cd01153 237 GLAQMFAMMNGARLGVGTQGTGLAEAAYL 265 (407)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888899999999999999999999874
No 23
>COG1960 CaiA Acyl-CoA dehydrogenases [Lipid metabolism]
Probab=100.00 E-value=2.3e-39 Score=296.91 Aligned_cols=258 Identities=41% Similarity=0.722 Sum_probs=227.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhhcCcccccccc---cCCCCCcHHHHHHHHhCCCCCCCCCcCCCCCCCCHHHHHHHHHH
Q 023057 28 TSLLFDDTQLQFKESVGQFARENIAPRAANIDQ---SNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEE 104 (288)
Q Consensus 28 ~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~d~---~~~~~~~~~~~~~l~~~Gl~~~~~pe~~GG~g~~~~~~~~v~e~ 104 (288)
...+++++. ++.+.+++|+++.+.+...+.++ .+.+|. +.|+++++.||+++.+|+++||.+.+..+...+.++
T Consensus 2 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~--~~~~~l~~~G~~~~~~p~e~GG~~~~~~~~~~~~e~ 78 (393)
T COG1960 2 DFDLSEEQE-ALRAEVREFAEEELAPEAAEIDRRIEDERFPR--ELLRALAEAGLLGLTIPEEYGGLGLSPLEQAAVLEE 78 (393)
T ss_pred CCcCCHHHH-HHHHHHHHHHHHhcCcchhhhhhhcccccCHH--HHHHHHHhCCcccCCCChhhCCCCcchhHHHHHHHH
Confidence 344567888 99999999999999877766664 678887 999999999999999999999999999999999999
Q ss_pred HHhhCCchhhHHHhhhhH---HHHHHHhcCCHHHHHhhchhHhcCCeeEEEEecCCCCCCCCCCCe-EEEEEeCCeEEEe
Q 023057 105 ISRASGSVGLSYGAHSNL---CINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMK-CKADRVDGGYIIN 180 (288)
Q Consensus 105 l~~~~~~~~~~~~~~~~~---~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~g~d~~~~~-~~a~~~~~g~~l~ 180 (288)
+++.+++.++.+..+... ....+..+|+++|+++|||++.+|+.++|+++|||++|||...+. |++++.+++|+||
T Consensus 79 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~q~~~~l~~~~~G~~~~~~~~tEp~~Gsd~~~~~~t~a~~~~g~~~ln 158 (393)
T COG1960 79 LARADAGGALALGLTHGGLGALAPTILRFGTEEQKRRYLPRLASGELIGAFALTEPGAGSDLASLRTTAAVRDDGDYVLN 158 (393)
T ss_pred HHhhCcchhhhHHHhccccccchHHHHHcCCHHHHHHhchhhhCCchhheeeccCCCCCcchhcCceeEEEecCCCEEEE
Confidence 999999877655554322 223566799999999999999999999999999999999999987 6677766669999
Q ss_pred eEeeeeeCCCCCCEEEEEEEeCCC-CCCCceEEEEEeCC-CCCeEecccccccCCCCCceeeEEeceeeeCCCCcccCCC
Q 023057 181 GNKMWCTNGPVAQTLVVYAKTDIK-AGSKGITAFIIEKG-MPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEG 258 (288)
Q Consensus 181 G~k~~v~~~~~ad~~lv~a~~~~~-~~~~~~~~~lv~~~-~~gv~~~~~~~~~Gl~~~~~~~v~~~~v~vp~~~~l~~~~ 258 (288)
|+|.|+||+..||+++|+++++++ ++++++++|+||.+ .||+++.+.|++.|++++++++|.|+||+||.+++||..+
T Consensus 159 G~K~~is~~~~ad~~~v~Ar~~~~~~~~~gis~flV~~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~vp~~~lig~~~ 238 (393)
T COG1960 159 GQKIWISNAPVADWLLVLARTDPAPGKHKGISLFLVPKDLTPGVSVGPILKKMGLRGSATGEVFFDDVRVPAENLLGEEG 238 (393)
T ss_pred eEEEEEcCCCCCCEEEEEEEcCCcccccCceEEEEEeCCCCCCeeeccccCcCCcCCCCeeEEEECCeeccHHHcCCcCC
Confidence 999999999999999999998765 45678999999999 5999997766533999999999999999999999999999
Q ss_pred ccHHHHHHhhhHHHHHHHHHHHHHhhcccC
Q 023057 259 KGVYVMMSGLDLERLVLAAGPLGIMQAPVR 288 (288)
Q Consensus 259 ~~~~~~~~~~~~~r~~~aa~~~G~a~~al~ 288 (288)
.|+......++..|+.+++.++|++++|++
T Consensus 239 ~g~~~~~~~l~~~r~~~aa~~~G~a~~al~ 268 (393)
T COG1960 239 DGFKIAMETLNVERLGIAAQALGIAEAALE 268 (393)
T ss_pred chHHHHHHhhchHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999874
No 24
>cd01152 ACAD_fadE6_17_26 Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26. Putative acyl-CoA dehydrogenases (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=100.00 E-value=1.1e-39 Score=297.72 Aligned_cols=249 Identities=23% Similarity=0.411 Sum_probs=217.3
Q ss_pred HHHHHHHHHHHHHHHHhhcCcccccc-----cccCCCCCcHHHHHHHHhCCCCCCCCCcCCCCCCCCHHHHHHHHHHHHh
Q 023057 33 DDTQLQFKESVGQFARENIAPRAANI-----DQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISR 107 (288)
Q Consensus 33 ~~~~~~l~~~~~~~~~~~~~~~~~~~-----d~~~~~~~~~~~~~~l~~~Gl~~~~~pe~~GG~g~~~~~~~~v~e~l~~ 107 (288)
++|. ++.+.+++|+++++.|..... ++.+.+|. ++|++|++.||+++.+|+++||.|.++.+++.++|++++
T Consensus 1 ~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~Gl~~l~vP~~~GG~g~~~~~~~~~~e~l~~ 77 (380)
T cd01152 1 PSEE-AFRAEVRAWLAAHLPPELREESALGYREGREDRR--RWQRALAAAGWAAPGWPKEYGGRGASLMEQLIFREEMAA 77 (380)
T ss_pred CcHH-HHHHHHHHHHHhcCCccccccccccccccchHHH--HHHHHHHhCCCCccCCChhhCCCCCCHHHHHHHHHHHHh
Confidence 3677 999999999999998875432 34566787 889999999999999999999999999999999999999
Q ss_pred hCCchhhHHHhhhhHHHHHHHhcCCHHHHHhhchhHhcCCeeEEEEecCCCCCCCCCCCeEEEEEeCCeEEEeeEeeeee
Q 023057 108 ASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCT 187 (288)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~v~ 187 (288)
.++++++.+..+. .+...+..+|+++|+++||+++.+|+.+.++++|||+.|+|...+.++++++++||+|||+|.|+|
T Consensus 78 ~~~~~~~~~~~~~-~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~L~G~K~~it 156 (380)
T cd01152 78 AGAPVPFNQIGID-LAGPTILAYGTDEQKRRFLPPILSGEEIWCQGFSEPGAGSDLAGLRTRAVRDGDDWVVNGQKIWTS 156 (380)
T ss_pred cCCCcccchhhHH-HHHHHHHHhCCHHHHHHHhHHHhCCchhheeecCCCCCCcchhhCeeeEEEcCCeEEEecEEEEEc
Confidence 9999887522222 345578889999999999999999998899999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEEEEeCCCC-CCCceEEEEEeCCCCCeEecccccccCCCCCceeeEEeceeeeCCCCcccCCCccHHHHHH
Q 023057 188 NGPVAQTLVVYAKTDIKA-GSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMS 266 (288)
Q Consensus 188 ~~~~ad~~lv~a~~~~~~-~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~~~~v~vp~~~~l~~~~~~~~~~~~ 266 (288)
++..+|+++|.++++++. ++.++.+|+||++.||+++.+.|+++| ++++++++|+||+||.+++++.++.++..+..
T Consensus 157 ~~~~ad~~lv~a~~~~~~~~~~~~~~~lVp~~~~Gv~~~~~~~~~g--~~~~~~l~f~~v~Vp~~~~lg~~~~g~~~~~~ 234 (380)
T cd01152 157 GAHYADWAWLLVRTDPEAPKHRGISILLVDMDSPGVTVRPIRSING--GEFFNEVFLDDVRVPDANRVGEVNDGWKVAMT 234 (380)
T ss_pred CccccCEEEEEEEeCCCccCcCCeEEEEEeCCCCceEeeehhhccC--CCCcceEEecCcCcchhcccCCCCchHHHHHH
Confidence 999999999999975422 234688999999999999988888877 57889999999999999999998889888888
Q ss_pred hhhHHHHHHHHHHHHHhhccc
Q 023057 267 GLDLERLVLAAGPLGIMQAPV 287 (288)
Q Consensus 267 ~~~~~r~~~aa~~~G~a~~al 287 (288)
.++..|+..++.+.|+++.++
T Consensus 235 ~l~~~r~~~~~~~~~~~~~a~ 255 (380)
T cd01152 235 TLNFERVSIGGSAATFFELLL 255 (380)
T ss_pred HHHhcccccchhhhHHHHHHH
Confidence 888889988888888887665
No 25
>cd01163 DszC Dibenzothiophene (DBT) desulfurization enzyme C. DszC is a flavin reductase dependent enzyme, which catalyzes the first two steps of DBT desulfurization in mesophilic bacteria. DszC converts DBT to DBT-sulfoxide, which is then converted to DBT-sulfone. Bacteria with this enzyme are candidates for the removal of organic sulfur compounds from fossil fuels, which pollute the environment. An equivalent enzyme tdsC, is found in thermophilic bacteria. This alignment also contains a closely related uncharacterized subgroup.
Probab=100.00 E-value=2.4e-39 Score=295.29 Aligned_cols=235 Identities=23% Similarity=0.305 Sum_probs=204.7
Q ss_pred HHHHHHhhcCcccccccccCCCCCcHHHHHHHHhCCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhhCCchhhHHHhhhhH
Q 023057 43 VGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNL 122 (288)
Q Consensus 43 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~Gl~~~~~pe~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~~~~~~ 122 (288)
++++. +.+.+.+.++|+.+.+|. +.|+.|++.||+++.+|++|||.|+++.+.+.++|+++++|+++++.+.+|. .
T Consensus 3 ~~~~~-~~~~~~a~~~d~~~~~p~--~~~~~l~~~G~~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~s~~~~~~~~~-~ 78 (377)
T cd01163 3 ARPLA-ARIAEGAAERDRQRGLPY--EEVALLRQSGLGTLRVPKEYGGLGASLPDLYEVVRELAAADSNIAQALRAHF-G 78 (377)
T ss_pred HHHHH-HHHhhhhhhhhhcCCCCH--HHHHHHHHCCCccccCchhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHH-H
Confidence 45553 346677778899999999 9999999999999999999999999999999999999999999998887776 4
Q ss_pred HHHHHHhcCCHHHHHhhchhHhcCCeeEEEEecCCCCCCCCCCCeEEEEEeCCeEEEeeEeeeeeCCCCCCEEEEEEEeC
Q 023057 123 CINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTD 202 (288)
Q Consensus 123 ~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~v~~~~~ad~~lv~a~~~ 202 (288)
....+..+|+++|+++|++++.+|+.+ +.+++||+.++ .....+++++++|||+|||+|.|+|++..||+++|.++++
T Consensus 79 ~~~~l~~~g~~~~~~~~l~~~~~g~~~-~~a~tE~~~~~-~~~~~~~~~~~~~g~~lnG~K~~is~a~~Ad~~~v~a~~~ 156 (377)
T cd01163 79 FVEALLLAGPEQFRKRWFGRVLNGWIF-GNAVSERGSVR-PGTFLTATVRDGGGYVLNGKKFYSTGALFSDWVTVSALDE 156 (377)
T ss_pred HHHHHHhcCcHHHHHHHHHHHhCCCeE-EEeecCCCCCC-CCCceEEEEecCCEEEEeceEEeecCCccceEEEEEEEcC
Confidence 456788899999999999999999965 56999998765 5566677778889999999999999999999999999865
Q ss_pred CCCCCCceEEEEEeCCCCCeEecccccccCCCCCceeeEEeceeeeCCCCcccCCCccHHHHHHhhhHHHHHHHHHHHHH
Q 023057 203 IKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGI 282 (288)
Q Consensus 203 ~~~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~~~~v~vp~~~~l~~~~~~~~~~~~~~~~~r~~~aa~~~G~ 282 (288)
+ .++.+|+||.+.||+++.+.|+++|++++++++|+|+||+||.+++++..+.++. ....+..+++.+++.++|+
T Consensus 157 ~----~~~~~~lV~~~~~Gv~i~~~~~~~G~~~~~s~~v~f~~v~Vp~~~~lg~~~~g~~-~~~~~~~~~l~~aa~~lG~ 231 (377)
T cd01163 157 E----GKLVFAAVPTDRPGITVVDDWDGFGQRLTASGTVTFDNVRVEPDEVLPRPNAPDR-GTLLTAIYQLVLAAVLAGI 231 (377)
T ss_pred C----CcEEEEEEeCCCCceeecCCcccccCccCCcceEEEeeEEECHHHccCCCccccc-cccccHHHHHHHHHHHHHH
Confidence 3 2567899999999999988899999999999999999999999999998776654 2234567899999999999
Q ss_pred hhcccC
Q 023057 283 MQAPVR 288 (288)
Q Consensus 283 a~~al~ 288 (288)
+++++|
T Consensus 232 a~~al~ 237 (377)
T cd01163 232 ARAALD 237 (377)
T ss_pred HHHHHH
Confidence 999874
No 26
>PLN02876 acyl-CoA dehydrogenase
Probab=100.00 E-value=3.3e-38 Score=312.22 Aligned_cols=257 Identities=25% Similarity=0.399 Sum_probs=218.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhcCccccccccc-------CCCC-CcHHHHHHHH-hCCCCCCCCCcC------------
Q 023057 29 SLLFDDTQLQFKESVGQFARENIAPRAANIDQS-------NSFP-QDVNLWKLMG-NFNLHGITAPQE------------ 87 (288)
Q Consensus 29 ~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~d~~-------~~~~-~~~~~~~~l~-~~Gl~~~~~pe~------------ 87 (288)
+.+|+++. ++++++++|+++++.|...++++. ..+| . +.|+++. ++||+++.+|++
T Consensus 400 ~~~s~~~~-~l~~~~~~f~~~~~~p~~~~~~~~~~~~~~~~~~p~~--~~~~~~~~~~G~~~~~~p~~~~~~~~~~~~~~ 476 (822)
T PLN02876 400 FVPSEKVL-ELRKKLIKFMEDHIYPMENEFYKLAQSSSRWTVHPEE--ERLKELAKKEGLWNLWIPLDSAARARKLLFED 476 (822)
T ss_pred cCCCHHHH-HHHHHHHHHHHHHccCccHHHHhhcccccccccCcch--HHHHHHHHHcCcccCCCCchhhhhhhhccccc
Confidence 56799999 999999999999988766554422 1366 5 7888875 999999999995
Q ss_pred ------------CCCCCCCHHHHHHHHHHHHhhCCchh-hHHHhhhhHHHHHHHhcCCHHHHHhhchhHhcCCeeEEEEe
Q 023057 88 ------------YGGLGLGYLYHCIAMEEISRASGSVG-LSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAM 154 (288)
Q Consensus 88 ------------~GG~g~~~~~~~~v~e~l~~~~~~~~-~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~ 154 (288)
+||.|+++.+.+.++|++|+++.+.. +.+..+...+...|..+|+++||++||+++++|+.++|+++
T Consensus 477 ~~~~~~~~~~~~~GG~G~~~~~~~~~~Eelg~~~~~~~~~~~~~~~~~~~~~l~~~gt~eqk~~~L~~l~~G~~~~~~a~ 556 (822)
T PLN02876 477 NKHMVSGDSADQLLGAGLSNLEYGYLCEIMGRSVWAPQVFNCGAPDTGNMEVLLRYGNKEQQLEWLIPLLEGKIRSGFAM 556 (822)
T ss_pred ccccccccccccCCCCCCCHHHHHHHHHHHhccchHHHHhcccCcccccHHHHHHhCCHHHHHHHHHHHhCCCceeEEEe
Confidence 99999999999999999999864422 21222222334568889999999999999999999999999
Q ss_pred cCCC-CCCCCCCCeEEEEEeCCeEEEeeEeeeeeCC--CCCCEEEEEEEeCCCC-CCCceEEEEEeCCCCCeEecccccc
Q 023057 155 SEPN-AGSDVVGMKCKADRVDGGYIINGNKMWCTNG--PVAQTLVVYAKTDIKA-GSKGITAFIIEKGMPGFSTAQKLDK 230 (288)
Q Consensus 155 te~~-~g~d~~~~~~~a~~~~~g~~l~G~k~~v~~~--~~ad~~lv~a~~~~~~-~~~~~~~~lv~~~~~gv~~~~~~~~ 230 (288)
|||+ +|||...+.|++++++|||+|||+|.|+||+ ..||+++|+++++++. +++++++|+||.+.|||++.++|++
T Consensus 557 tEp~~~gsd~~~~~t~a~~~g~g~vLnG~K~~vtga~~~~ad~~lv~ar~~~~~~~~~~~s~flV~~~~pGv~i~~~~~~ 636 (822)
T PLN02876 557 TEPQVASSDATNIECSIRRQGDSYVINGTKWWTSGAMDPRCRVLIVMGKTDFNAPKHKQQSMILVDIQTPGVQIKRPLLV 636 (822)
T ss_pred cCCCccCcccccceEEEEEcCCEEEEEeEEEEecCCCCCCCCEEEEEEecCCCCCCCCcceEEEEeCCCCCceeecccce
Confidence 9997 6799999999999999999999999999998 5799999999875422 2346789999999999999888999
Q ss_pred cCCCCC--ceeeEEeceeeeCCCCcccCCCccHHHHHHhhhHHHHHHHHHHHHHhhcccC
Q 023057 231 LGMRGS--DTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQAPVR 288 (288)
Q Consensus 231 ~Gl~~~--~~~~v~~~~v~vp~~~~l~~~~~~~~~~~~~~~~~r~~~aa~~~G~a~~al~ 288 (288)
+|++++ ++++|+|+||+||++++++..++|+......++.+|+..|+.++|++++|++
T Consensus 637 ~G~r~~~~~~~~v~fd~V~Vp~~~~lg~~g~g~~~~~~~l~~~r~~~aa~~vG~a~~ale 696 (822)
T PLN02876 637 FGFDDAPHGHAEISFENVRVPAKNILLGEGRGFEIAQGRLGPGRLHHCMRLIGAAERGMQ 696 (822)
T ss_pred eccCCCCCCeeEEEEcceeechhheecCCCchHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 999974 5889999999999999999888888888888999999999999999999874
No 27
>KOG0137 consensus Very-long-chain acyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=100.00 E-value=1.8e-39 Score=293.09 Aligned_cols=279 Identities=30% Similarity=0.528 Sum_probs=247.7
Q ss_pred ccccccccccccccccccCCCCCCCCHHHHHHHHHHHHHHHHhhcCc--ccccccccCCCCCcHHHHHHHHhCCCCCCCC
Q 023057 7 ARSLCASFFTKKQKHSAAFSSTSLLFDDTQLQFKESVGQFARENIAP--RAANIDQSNSFPQDVNLWKLMGNFNLHGITA 84 (288)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~~~l~~~Gl~~~~~ 84 (288)
.+|+...+|..+.+..+.+.+|.-+++|+. ++.+.+..-+++.+.. +.+..|+.+..++ +.|+.|++.|++++.+
T Consensus 52 ~rs~~~~lF~~~~v~k~v~~yPev~~~e~~-~~~~~~~~pl~r~f~e~~d~~k~d~~~~~~~--~t~e~l~elG~fgl~v 128 (634)
T KOG0137|consen 52 SRSFARGLFRGKLVTKDVFPYPEVITSEQK-ELLEQFVLPLERFFEEVNDSKKNDKLGKIEE--TTLEALRELGLFGLQV 128 (634)
T ss_pred chhHHHHhhhhhhhhhhhcCCcccCcHHHH-HHHHhhhhhHHHhhhccchhhhhhhhcccch--hHHHHHHHhCceeecc
Confidence 455666667777777788888888899888 6664444333333322 2456788888999 9999999999999999
Q ss_pred CcCCCCCCCCHHHHHHHHHHHHhhCCchhhHHHhhhhHHHHHHHhcCCHHHHHhhchhHhcCCeeEEEEecCCCCCCCCC
Q 023057 85 PQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVV 164 (288)
Q Consensus 85 pe~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~g~d~~ 164 (288)
|++|+|.|+++.++..+.|.++-+|.++++.+..|...+...|..+|+++|+++|||++++|+.+.++++|||..|||..
T Consensus 129 ~~e~~G~G~~ntq~arl~e~~~~~D~~v~~tl~ahq~i~~k~l~lyGt~~Qk~kYL~~LaSg~~~~A~altE~s~Gsdaa 208 (634)
T KOG0137|consen 129 PSEFDGLGFCNTQYARLFEIVSVADLNVGVTLGAHQSIGLKGLLLYGTDEQKQKYLPKLASGKLIAAFALTEPSSGSDAA 208 (634)
T ss_pred CcccCccccchHHHHHHhhccccccccceeeeccchhhheeeeeecCCHHHHHHHHHhhhcCCccceEEEecCCCCcccc
Confidence 99999999999999999999999999999999999877888899999999999999999999999999999999999999
Q ss_pred CCeEEEEEeCCe--EEEeeEeeeeeCCCCCCEEEEEEEeCCC--C--CCCceEEEEEeCCCCCeEecccccccCCCCCce
Q 023057 165 GMKCKADRVDGG--YIINGNKMWCTNGPVAQTLVVYAKTDIK--A--GSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDT 238 (288)
Q Consensus 165 ~~~~~a~~~~~g--~~l~G~k~~v~~~~~ad~~lv~a~~~~~--~--~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~ 238 (288)
...++++...|| |+|||.|.|++|+..||+++|+|++..+ + ..++.++|||+++..|++...+..++|.+++.+
T Consensus 209 s~~~~a~~s~dg~~y~LNG~Kiwisn~g~Adif~VfAqt~~~~~~g~~k~k~T~Flver~~~Gvt~G~~e~k~GiKgsnt 288 (634)
T KOG0137|consen 209 SGRTTATLSPDGKHYVLNGSKIWISNGGLADIFTVFAQTEVDPADGEVKRKITAFLVERDFGGVTNGPPEKKMGIKGSNT 288 (634)
T ss_pred cceeeeeecCCCCeEEEcCeeEEEecCccceeeeeeeccccCCCCccccCceEEEEEeccccCccCCCchhhhcccccce
Confidence 999999987765 9999999999999999999999998632 1 235789999999999999988899999999999
Q ss_pred eeEEeceeeeCCCCcccCCCccHHHHHHhhhHHHHHHHHHHHHHhhcccC
Q 023057 239 CELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQAPVR 288 (288)
Q Consensus 239 ~~v~~~~v~vp~~~~l~~~~~~~~~~~~~~~~~r~~~aa~~~G~a~~al~ 288 (288)
.+|+|+++.||.+++||.++.|+++...+++.+|+..++..+|.|+++++
T Consensus 289 ~~v~f~~~ki~~envlG~~G~G~kva~nilnsgR~~~aaa~~G~mkr~I~ 338 (634)
T KOG0137|consen 289 AEVHFEGVKIPIENVLGKPGDGFKVAMNILNSGRFGMAAALLGLMKRIIE 338 (634)
T ss_pred eeeeeccccccHHHhcCCCCcchHHHHHHHccCCcchhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999873
No 28
>PTZ00456 acyl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=7.5e-38 Score=298.48 Aligned_cols=256 Identities=25% Similarity=0.408 Sum_probs=216.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhcCcccccccccCCC---------CC-cHHHHHHHHhCCCCCCCCCcCCCCCCCCHHHH
Q 023057 29 SLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSF---------PQ-DVNLWKLMGNFNLHGITAPQEYGGLGLGYLYH 98 (288)
Q Consensus 29 ~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~---------~~-~~~~~~~l~~~Gl~~~~~pe~~GG~g~~~~~~ 98 (288)
.+++++..+++++.+++|+++.+.|...+.|+++.+ |+ ..++|+++.+.||+++.+|+++||.|+++...
T Consensus 53 ~~~~~~~~~~il~~a~~fa~~~~~p~~~~~D~~~~~~~~~g~v~~p~g~~e~~~~l~e~G~~~l~~Pee~GG~Gl~~~~~ 132 (622)
T PTZ00456 53 TDVTKELMDSLLEEASKLATQTLLPLYESSDSEGCVLLKDGNVTTPKGFKEAYQALKAGGWTGISEPEEYGGQALPLSVG 132 (622)
T ss_pred ccCCHHHHHHHHHHHHHHHHHhcccchhhHhhccCccccCCcccCChhHHHHHHHHHHcCCCCCCCCcccCCCCcCHHHH
Confidence 457777777999999999999999988777776543 42 23799999999999999999999999998755
Q ss_pred HHHHHHHHhhCCchhhHHHhhhhHHHHHHHhcCCHHHHHhhchhHhcCCeeEEEEecCCCCCCCCCCCeEEEEEeCCe-E
Q 023057 99 CIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGG-Y 177 (288)
Q Consensus 99 ~~v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~g~d~~~~~~~a~~~~~g-~ 177 (288)
..+.|.+++.++++++....+. .+...|..+|+++||++|||++++|++++++++|||+.|||...+.|+|++++|| |
T Consensus 133 ~~~~E~~~~a~~~~~~~~~l~~-ga~~~L~~~Gs~eqk~~~Lp~l~sGe~~~t~alTEp~aGSD~~~l~T~A~~~gdG~y 211 (622)
T PTZ00456 133 FITRELMATANWGFSMYPGLSI-GAANTLMAWGSEEQKEQYLTKLVSGEWSGTMCLTEPQCGTDLGQVKTKAEPSADGSY 211 (622)
T ss_pred HHHHHHHHHhchHHHHHHHHHH-HHHHHHHHhCCHHHHHHHHHHHhcCChhhhhhccCCccCCCcccCeeEEEECCCCcE
Confidence 5555556777776654333332 3456788999999999999999999999999999999999999999999999885 9
Q ss_pred EEeeEeeeeeCCCCC----CEEEEEEEeCCC-CCCCceEEEEEeCCC----------CCeEecccccccCCCCCceeeEE
Q 023057 178 IINGNKMWCTNGPVA----QTLVVYAKTDIK-AGSKGITAFIIEKGM----------PGFSTAQKLDKLGMRGSDTCELV 242 (288)
Q Consensus 178 ~l~G~k~~v~~~~~a----d~~lv~a~~~~~-~~~~~~~~~lv~~~~----------~gv~~~~~~~~~Gl~~~~~~~v~ 242 (288)
+|||+|.|||++.++ ++++|+|+++++ ++++++++|+||++. +|+++.+..+++|+++++++.+.
T Consensus 212 ~L~G~K~fIt~g~~~~~~n~~~lVlAr~~~~~~g~~GiSlFlVp~~~~~~~G~~~~~~gv~~~~~~~kmG~~gs~t~~l~ 291 (622)
T PTZ00456 212 KITGTKIFISAGDHDLTENIVHIVLARLPNSLPTTKGLSLFLVPRHVVKPDGSLETAKNVKCIGLEKKMGIKGSSTCQLS 291 (622)
T ss_pred EEeeEEEEecCCchhhccCcEEEEEEEecCCCCCCCceEEEEEeCCCCCcCCCccCCCCeeecCcccccCCCCCceEEEE
Confidence 999999999998763 678999998653 356789999999865 36777777899999999999999
Q ss_pred eceeeeCCCCcccCCCccHHHHHHhhhHHHHHHHHHHHHHhhcccC
Q 023057 243 FENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQAPVR 288 (288)
Q Consensus 243 ~~~v~vp~~~~l~~~~~~~~~~~~~~~~~r~~~aa~~~G~a~~al~ 288 (288)
|+|+ .+++||.+++|+..+..+++.+|+.+++.++|+++++++
T Consensus 292 fd~~---~~~llG~~~~Gl~~~~~~mn~aRl~vaa~~lG~a~~Al~ 334 (622)
T PTZ00456 292 FENS---VGYLIGEPNAGMKQMFTFMNTARVGTALEGVCHAELAFQ 334 (622)
T ss_pred eeCh---hHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9984 578999999999999999999999999999999999874
No 29
>KOG0138 consensus Glutaryl-CoA dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=2.7e-38 Score=264.95 Aligned_cols=259 Identities=28% Similarity=0.493 Sum_probs=233.6
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHHHHHhhcCcccccccccCCCCCcHHHHHHHHhCCCCCCCCCcCCCCCCCCHHHHHH
Q 023057 21 HSAAFSSTSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCI 100 (288)
Q Consensus 21 ~~~~~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~Gl~~~~~pe~~GG~g~~~~~~~~ 100 (288)
++.++--.-.+++|+. .+++++|+++++++.|...+..+.+.||+ ++..++..+|+++..+ +.||=.|.|...+..
T Consensus 45 ~qD~~~l~dqLT~dE~-air~~~Reycq~~l~Prvtea~r~e~F~~--~i~pemGsmGvlG~ti-kGYGCaG~S~vaygl 120 (432)
T KOG0138|consen 45 WQDPLVLEDQLTEDEI-AIRDTFREYCQERLMPRVTEANRNEVFDR--EIIPEMGSMGVLGPTI-KGYGCAGVSSVAYGL 120 (432)
T ss_pred ccchhhhhhhcCHHHH-HHHHHHHHHHHHHhhhHHHHHhhhccCCh--hhhhhhhccccccCcc-cCcCCCchHHHHHHH
Confidence 4445555567899999 99999999999999999999999999999 9999999999999877 668888999999999
Q ss_pred HHHHHHhhCCchhhHHHhhhhHHHHHHHhcCCHHHHHhhchhHhcCCeeEEEEecCCCCCCCCCCCeEEEEEeCCe--EE
Q 023057 101 AMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGG--YI 178 (288)
Q Consensus 101 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~g~d~~~~~~~a~~~~~g--~~ 178 (288)
+.+|+.|.|.+-...+.+|+.++...+..+|+++||++|||.+++|+.++|+++|||.+|||+.++.|+|+.++.+ |.
T Consensus 121 ~~rEveRVDs~yrs~~sVqsSL~m~~Iy~~GSE~QkqkYlPslA~g~~igcfgLTEPn~GSdpsgmeT~At~~e~~ktyk 200 (432)
T KOG0138|consen 121 LAREVERVDSGYRSAMSVQSSLVMGPIYAYGSEEQKQKYLPSLAKGKLIGCFGLTEPNHGSDPSGMETRATYDESNKTYK 200 (432)
T ss_pred HHHHHHHhhhhchhhhhhhhhhhhhhHhhcCCHHHHhhhhhhhhcCceeeEEeccCCCCCCCcccccceeEEccCCceEE
Confidence 9999999998888778888889999999999999999999999999999999999999999999999999999888 99
Q ss_pred EeeEeeeeeCCCCCCEEEEEEEeCCCCCCCceEEEEEeCCCCCeEecccccccCCCCCceeeEEeceeeeCCCCcccCCC
Q 023057 179 INGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEG 258 (288)
Q Consensus 179 l~G~k~~v~~~~~ad~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~~~~v~vp~~~~l~~~~ 258 (288)
|||+|.|++|++.||+++|.||...+ ..+.-|+|.++.+|++......++++|...++.+-+|+|+||++++|....
T Consensus 201 lNGsKtWI~nsp~aDl~vvwAr~~t~---n~I~GFi~~k~~~GL~apkI~gK~sLRas~tG~Ilmd~V~VPeE~~LPg~~ 277 (432)
T KOG0138|consen 201 LNGSKTWITNSPMADLFVVWARCETD---NKIRGFILEKGMRGLSAPKIEGKFSLRASATGMILMDGVEVPEENLLPGAS 277 (432)
T ss_pred ECCeeeeecCCcccceEEEEEecccC---CceeeEEEecCCCCCcCCCcCCeeeeeecccCceeecCCcCChhhcCCCcc
Confidence 99999999999999999999998743 467789999999999987778899999999999999999999999995432
Q ss_pred ccHHHHHHhhhHHHHHHHHHHHHHhhccc
Q 023057 259 KGVYVMMSGLDLERLVLAAGPLGIMQAPV 287 (288)
Q Consensus 259 ~~~~~~~~~~~~~r~~~aa~~~G~a~~al 287 (288)
++.--...++.+|..++...+|++..++
T Consensus 278 -s~qgpf~cLnnaR~giAWg~lGase~c~ 305 (432)
T KOG0138|consen 278 -SLQGPFGCLNNARYGIAWGALGASEFCL 305 (432)
T ss_pred -ccCCchhhhhhhhhheeehhchhHHHHH
Confidence 4444456788999999999999988775
No 30
>PLN02636 acyl-coenzyme A oxidase
Probab=100.00 E-value=1.6e-36 Score=291.95 Aligned_cols=250 Identities=22% Similarity=0.358 Sum_probs=219.7
Q ss_pred CCCHHHHHHHHHHHHHHHHhhc---CcccccccccCCCC-CcHHHHHHHHhCCCCCCCCCcCCCCCCCCHHHHHHHHHHH
Q 023057 30 LLFDDTQLQFKESVGQFARENI---APRAANIDQSNSFP-QDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEI 105 (288)
Q Consensus 30 ~~s~~~~~~l~~~~~~~~~~~~---~~~~~~~d~~~~~~-~~~~~~~~l~~~Gl~~~~~pe~~GG~g~~~~~~~~v~e~l 105 (288)
.+++++. ++++++++|+++.. .+....+++.+.++ . ++++.+++.|++++.+|++ +..++..+.|++
T Consensus 60 ~l~~~~~-~~r~~v~~~~~~~~~~~~~~~~~~~~~~e~~~~--~l~~~~~~~g~~~~~~~~~------~~~~~~~~~e~l 130 (686)
T PLN02636 60 YMRGKHR-DIQEKIYEFFNSRPDLQTPVEISKDEHRELCMR--QLTGLVREAGIRPMKYLVE------DPAKYFAITEAV 130 (686)
T ss_pred hcCCcHH-HHHHHHHHHHHhCccccCCchhhHHHhhhhHHH--HHHHHHHhcCccccccccC------CHHHHHHHHHHH
Confidence 3566777 89999999987763 45555667677777 6 8999999999999999976 788899999999
Q ss_pred HhhCCchhhHHHhhhhHHHHHHHhcCCHHHHHhhchhHhcCCeeEEEEecCCCCCCCCCCCeEEEEEe--CCeEEEe---
Q 023057 106 SRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRV--DGGYIIN--- 180 (288)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~g~d~~~~~~~a~~~--~~g~~l~--- 180 (288)
++.+++++..+..|..++...|..+|+++|+++|||++.+|+.++|+++|||++|||...++|+|+++ +|+|+||
T Consensus 131 ~~~d~s~~~~~~vh~~l~~~~I~~~GTeeQk~~~L~~~~~ge~ig~fA~TEpghGSdv~~leTtA~~d~~~defVLntP~ 210 (686)
T PLN02636 131 GSVDMSLGIKLGVQYSLWGGSVINLGTKKHRDKYFDGIDNLDYPGCFAMTELHHGSNVQGLQTTATFDPLTDEFVINTPN 210 (686)
T ss_pred HhhchhhHHHHHhhhhhHHHHHHHhCCHHHHHHHHHHHhCCChhhhhhccCCCcccCcccCeeEEEEcCCCCeEEECCCC
Confidence 99999888778888767888899999999999999999999999999999999999999999999998 7889999
Q ss_pred --eEeeeeeCCCC-CCEEEEEEEeCCC------CCCCceEEEEEeCC-------CCCeEecccccccCCCCCceeeEEec
Q 023057 181 --GNKMWCTNGPV-AQTLVVYAKTDIK------AGSKGITAFIIEKG-------MPGFSTAQKLDKLGMRGSDTCELVFE 244 (288)
Q Consensus 181 --G~k~~v~~~~~-ad~~lv~a~~~~~------~~~~~~~~~lv~~~-------~~gv~~~~~~~~~Gl~~~~~~~v~~~ 244 (288)
|+|+|++|+.. ||+++|+|++..+ +++.++++|+||.+ .|||++.+..+++|+++.+++.+.||
T Consensus 211 ~~g~K~wI~na~~~ad~~vV~Arl~~~~~~~~~~~~~Gi~~FlVp~r~~~~~~~~PGV~v~~~~~K~G~~g~dng~l~Fd 290 (686)
T PLN02636 211 DGAIKWWIGNAAVHGKFATVFARLKLPTHDSKGVSDMGVHAFIVPIRDMKTHQVLPGVEIRDCGHKVGLNGVDNGALRFR 290 (686)
T ss_pred CCeEEEeecCCcccCCEEEEEEEecCCCCCccCCCCCCeeEEEEecCccccCCCCCCeEeccCCCccCCCCCcceEEEEe
Confidence 99999999965 9999999998631 12458999999987 59999988899999999999999999
Q ss_pred eeeeCCCCcccC----------------CCccHHHHHHhhhHHHHHHHHHHHHHhhcccC
Q 023057 245 NCFVPNENVLGQ----------------EGKGVYVMMSGLDLERLVLAAGPLGIMQAPVR 288 (288)
Q Consensus 245 ~v~vp~~~~l~~----------------~~~~~~~~~~~~~~~r~~~aa~~~G~a~~al~ 288 (288)
||+||.+++|+. .++|+......+..+|+.+++.++|++++|++
T Consensus 291 nVrVP~~nlLg~~g~v~~~G~y~~~~~~~~~gf~~~~~~l~~~R~~iaa~a~g~a~~Al~ 350 (686)
T PLN02636 291 SVRIPRDNLLNRFGDVSRDGKYTSSLPTINKRFAATLGELVGGRVGLAYGSVGVLKASNT 350 (686)
T ss_pred eEEECHHHhccccccccCCCcccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999953 25688888899999999999999999999873
No 31
>PTZ00457 acyl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=3.5e-35 Score=273.13 Aligned_cols=243 Identities=33% Similarity=0.388 Sum_probs=206.0
Q ss_pred ccccccccccccccccccccCCCC-CCCCHHHHHHHHHHH-HHHHHhhcCcccccccccCCCCCcHHHHHHHHhC-CCCC
Q 023057 5 LGARSLCASFFTKKQKHSAAFSST-SLLFDDTQLQFKESV-GQFARENIAPRAANIDQSNSFPQDVNLWKLMGNF-NLHG 81 (288)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~l~~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~-Gl~~ 81 (288)
..+.|+..++|.+.-+.+..|++| ..+++|+. +..+.. ..+ .+.++++ ||++
T Consensus 13 ~~~~sf~~~lF~g~~~~~~~~pyP~~~~~~~~~-~~~~~~~~~~------------------------~~~~~~l~Gl~g 67 (520)
T PTZ00457 13 VRHASYAAGLFNFKIVPEEMFPYPCRKLDGDEA-ENLQSLLEQI------------------------RSNDKILGNLYG 67 (520)
T ss_pred ccCccHHHHhhCcccchhhcCCCCCCCCCHHHH-HHHHHHHHHH------------------------HhchHhcCCccC
Confidence 456788999999999999999888 55688777 333332 222 1147799 9999
Q ss_pred CCCCcCCCCCCCCHHHHHHHHHHHHhhCCchhhHHHhhhhHHHHHHHhcCCHHHHHhhchhHhcCCeeEEEEecCCCCCC
Q 023057 82 ITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGS 161 (288)
Q Consensus 82 ~~~pe~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~g~ 161 (288)
+.+|++|||.|+++.+++.+.|++|+.+++.++.+..|..++...+..+|+++||++|||++++|+.+++++++| +.||
T Consensus 68 l~vPeeyGG~Gl~~~~~a~v~Eelgr~~~s~~l~~~~h~~l~~~~L~~~Gt~eqker~Lp~lasGe~i~A~AltE-~aGS 146 (520)
T PTZ00457 68 ARIATEYGGLGLGHTAHALIYEEVGTNCDSKLLSTIQHSGFCTYLLSTVGSKELKGKYLTAMSDGTIMMGWATEE-GCGS 146 (520)
T ss_pred CCCChhhCCCCCCHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCcEEEEEeCC-CCCC
Confidence 999999999999999999999999998877766555665456677888999999999999999999999999988 8999
Q ss_pred CCCCCeEEEEEe-CCeEEEeeEeeeeeCCCCCCEEEEEEEeCC----CCC---CCceEEEEEeCCCCCeEecccccccCC
Q 023057 162 DVVGMKCKADRV-DGGYIINGNKMWCTNGPVAQTLVVYAKTDI----KAG---SKGITAFIIEKGMPGFSTAQKLDKLGM 233 (288)
Q Consensus 162 d~~~~~~~a~~~-~~g~~l~G~k~~v~~~~~ad~~lv~a~~~~----~~~---~~~~~~~lv~~~~~gv~~~~~~~~~Gl 233 (288)
|...+.|++++. +|+|+|||+|.|+ ++..||+++|+|++++ +.+ .+++++|+||++.|||++..
T Consensus 147 D~a~i~TtA~~~~gg~wvLNG~K~~t-~g~~Ad~~lV~Art~~~~~~~~g~~~~~git~FlV~~dapGVtv~~------- 218 (520)
T PTZ00457 147 DISMNTTKASLTDDGSYVLTGQKRCE-FAASATHFLVLAKTLTQTAAEEGATEVSRNSFFICAKDAKGVSVNG------- 218 (520)
T ss_pred ccccceeEEEEcCCCeEEEEEEEEEE-cCchhcEEEEEeecCCcccccccccCcCceEEEEEECCCCceEEec-------
Confidence 999999999986 4579999999976 8999999999999753 111 24689999999999999842
Q ss_pred CCCceeeEEeceeeeCCCCcccCCCccHHHHHHhhhHHHHHHHHHHHHHhhcccC
Q 023057 234 RGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQAPVR 288 (288)
Q Consensus 234 ~~~~~~~v~~~~v~vp~~~~l~~~~~~~~~~~~~~~~~r~~~aa~~~G~a~~al~ 288 (288)
++|+|+|| |.+++||..+.|++.....++.+|+.+++.++|+++++++
T Consensus 219 -----~eV~FddV--P~~~vLG~~g~G~~~a~~~L~~~Rl~~aA~~vGia~~ale 266 (520)
T PTZ00457 219 -----DSVVFENT--PAADVVGVVGEGFKDAMITLFTEQYLYAASLLGIMKRVVQ 266 (520)
T ss_pred -----CEEEECCC--CHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 59999997 9999999999999999999999999999999999999874
No 32
>PLN02312 acyl-CoA oxidase
Probab=100.00 E-value=1.6e-34 Score=277.59 Aligned_cols=227 Identities=21% Similarity=0.295 Sum_probs=201.1
Q ss_pred cccccCCCCCcHHHHHHHHhCCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhhCCchhhHHHhhhhHHHHHHHhcCCHHHH
Q 023057 57 NIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQK 136 (288)
Q Consensus 57 ~~d~~~~~~~~~~~~~~l~~~Gl~~~~~pe~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ 136 (288)
.+++...++. +.|+++.+.|+.+..+|++ |.+ +....+.++|++++.+++++..+..|..++...|..+|+++|+
T Consensus 99 s~~~~~~~~~--~~~~~l~~~g~~~~~~pe~--g~~-~~~~~~~~~Eel~~~d~s~~~~~~vh~~l~~~~I~~~GTeeqk 173 (680)
T PLN02312 99 TMEQQREITM--KRILYLLERGVFRGWLTET--GPE-AELRKLALLEVIGIYDHSLAIKLGVHFFLWGGAIKFLGTKRHH 173 (680)
T ss_pred CHHHHHHhHH--HHHHHHHHhhhcCCCCCCC--CCc-cHHHHHHHHHHHHHhcchHHHHHHhhhhhHHHHHHHhCCHHHH
Confidence 3455566677 8999999999999999995 333 6888899999999999988777788876778889999999999
Q ss_pred HhhchhHhcCCeeEEEEecCCCCCCCCCCCeEEEEEe--CCeEEEe-----eEeeeeeCC-CCCCEEEEEEEeCCCCCCC
Q 023057 137 DKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRV--DGGYIIN-----GNKMWCTNG-PVAQTLVVYAKTDIKAGSK 208 (288)
Q Consensus 137 ~~~l~~~~~g~~~~~~a~te~~~g~d~~~~~~~a~~~--~~g~~l~-----G~k~~v~~~-~~ad~~lv~a~~~~~~~~~ 208 (288)
++|||.+.+|+.++|+++|||++|||..+++|+|+++ +|+|+|| |+|+|++|+ ..||+++|+|++..++++.
T Consensus 174 ~~~L~~~~~ge~ig~fA~TEpghGSdv~~leTtAt~D~~~defVLNtPt~~g~K~wig~a~~~A~~~vV~Arl~~~~~~~ 253 (680)
T PLN02312 174 DKWLKDTEDYVVKGCFAMTELGHGSNVRGIETVTTYDPKTEEFVINTPCESAQKYWIGGAANHATHTIVFSQLHINGKNE 253 (680)
T ss_pred HHHHHHHhCCCeeeEeeecCCCcCcchhcCeEEEEEeCCCCEEEECCCCCCeEEECccCCcccCCEEEEEEEECCCCCCC
Confidence 9999999999999999999999999999999999998 4779999 799999998 7999999999987554556
Q ss_pred ceEEEEEe---CC---CCCeEecccccccCCCCCceeeEEeceeeeCCCCcccC----------------CCccHHHHHH
Q 023057 209 GITAFIIE---KG---MPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQ----------------EGKGVYVMMS 266 (288)
Q Consensus 209 ~~~~~lv~---~~---~~gv~~~~~~~~~Gl~~~~~~~v~~~~v~vp~~~~l~~----------------~~~~~~~~~~ 266 (288)
++.+|+|| .+ .|||++.+..+++|+++.+++.|.|+||+||++++|+. ++.++..+..
T Consensus 254 Gv~~FlV~ird~~~~~~PGV~ig~~~~K~G~~g~dng~l~FdnVrVP~~nlLg~~~~V~~~G~y~~~~~~~~~gf~~~~~ 333 (680)
T PLN02312 254 GVHAFIAQIRDQDGNICPNIRIADCGHKIGLNGVDNGRIWFDNLRIPRENLLNSVADVSPDGKYVSAIKDPDQRFGAFLA 333 (680)
T ss_pred CeEEEEEeecCCCCCCCCCEEeccCCCcccccCCCceEEEEccEEECHHHhCCccceeCCCCceecCCCCccchHHHHHH
Confidence 89999998 23 79999999899999999999999999999999999983 5678888888
Q ss_pred hhhHHHHHHHHHHHHHhhcccC
Q 023057 267 GLDLERLVLAAGPLGIMQAPVR 288 (288)
Q Consensus 267 ~~~~~r~~~aa~~~G~a~~al~ 288 (288)
.+..+|+.+++.++|++++|++
T Consensus 334 ~l~~~R~~iaa~a~g~a~~Al~ 355 (680)
T PLN02312 334 PLTSGRVTIAVSAIYSSKVGLA 355 (680)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999874
No 33
>cd01154 AidB Proteins involved in DNA damage response, similar to the AidB gene product. AidB is one of several genes involved in the SOS adaptive response to DNA alkylation damage, whose expression is activated by the Ada protein. Its function has not been entirely elucidated; however, it is similar in sequence and function to acyl-CoA dehydrogenases. It has been proposed that aidB directly destroys DNA alkylating agents such as nitrosoguanidines (nitrosated amides) or their reaction intermediates.
Probab=100.00 E-value=4.4e-34 Score=263.56 Aligned_cols=237 Identities=26% Similarity=0.384 Sum_probs=199.7
Q ss_pred HHHHHHHhhcCcccccccccCC------CCC-cHHHHHHHHhCCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhhCCchhh
Q 023057 42 SVGQFARENIAPRAANIDQSNS------FPQ-DVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGL 114 (288)
Q Consensus 42 ~~~~~~~~~~~~~~~~~d~~~~------~~~-~~~~~~~l~~~Gl~~~~~pe~~GG~g~~~~~~~~v~e~l~~~~~~~~~ 114 (288)
...++++.+ .|...++|+.+. +|+ ..++++.+.+.||+++ +|+++|+.| ......+.+.++..+....+
T Consensus 36 ~~~~~a~~~-~P~~~~~d~~g~r~~~v~~~~~~~~~~~~~~~~G~~~~-~~~~~~~~g--~~~~~~~~~~~~~~~~~~~~ 111 (418)
T cd01154 36 ELARLADRN-PPVLEMWDRWGRRVDRVWVHPAWHALMRRLIEEGVINI-EDGPAGEGR--RHVHFAAGYLLSDAAAGLLC 111 (418)
T ss_pred HHHHHhhcC-CCcccCCCCCCCcCCeEEeCHHHHHHHHHHHHcCCccC-CchhhCCCc--HHHHHHHHHHHHhcchhccC
Confidence 334454554 777788888877 662 2378899999999999 777777655 33444567777777766666
Q ss_pred HHHhhhhHHHHHHHhcCCHHHHHhhchhHhcCC----eeEEEEecCCCCCCCCCCCeEEEEEe-CCeEEEeeEeeeeeCC
Q 023057 115 SYGAHSNLCINQLVRHGSPAQKDKYLPKLISGE----HVGALAMSEPNAGSDVVGMKCKADRV-DGGYIINGNKMWCTNG 189 (288)
Q Consensus 115 ~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~----~~~~~a~te~~~g~d~~~~~~~a~~~-~~g~~l~G~k~~v~~~ 189 (288)
++.+|. .++..|..+|+++| ++||+++++|+ .++|+++|||++|||...+.|+|+++ +|+|+|||+|+|+|++
T Consensus 112 p~~~~~-~~~~~l~~~g~~~~-~~~l~~l~~g~~~~~~~~~~~~TEp~~GSD~~~~~T~A~~~~g~~~~LnG~K~f~s~a 189 (418)
T cd01154 112 PLTMTD-AAVYALRKYGPEEL-KQYLPGLLSDRYKTGLLGGTWMTEKQGGSDLGANETTAERSGGGVYRLNGHKWFASAP 189 (418)
T ss_pred cHHHHH-HHHHHHHHhCcHHH-HHHHHHHhCCCcccchhheeeecCCCcccchhhCeEEEEECCCCcEEEEEEEEEecCc
Confidence 666666 57788999998886 56999999997 88999999999999999999999999 8999999999999999
Q ss_pred CCCCEEEEEEEeCCC-CCCCceEEEEEeCCCC-----CeEecccccccCCCCCceeeEEeceeeeCCCCcccCCCccHHH
Q 023057 190 PVAQTLVVYAKTDIK-AGSKGITAFIIEKGMP-----GFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYV 263 (288)
Q Consensus 190 ~~ad~~lv~a~~~~~-~~~~~~~~~lv~~~~~-----gv~~~~~~~~~Gl~~~~~~~v~~~~v~vp~~~~l~~~~~~~~~ 263 (288)
.||+++|+|+++++ ++++++++|+||++.| ||++.+.|+++|++++++++|.|+||. ++++|.++.|+..
T Consensus 190 -~Ad~~lv~Art~~~~~~~~gls~flVp~~~~~~~~~Gv~i~~~~~~~G~r~~~~~ev~f~dv~---~~~lG~~g~G~~~ 265 (418)
T cd01154 190 -LADAALVLARPEGAPAGARGLSLFLVPRLLEDGTRNGYRIRRLKDKLGTRSVATGEVEFDDAE---AYLIGDEGKGIYY 265 (418)
T ss_pred -ccCEEEEEEECCCCCCCCCcEEEEEEeccCCCCCCCCeEecccccccCCCCCCeEEEEecCcC---ccccCCCCccHHH
Confidence 99999999998653 3456899999999885 999999999999999999999999984 7899999999999
Q ss_pred HHHhhhHHHHHHHHHHHHHhhcccC
Q 023057 264 MMSGLDLERLVLAAGPLGIMQAPVR 288 (288)
Q Consensus 264 ~~~~~~~~r~~~aa~~~G~a~~al~ 288 (288)
+...++..|+..++.++|+++++++
T Consensus 266 ~~~~l~~~R~~~aa~~~G~a~~al~ 290 (418)
T cd01154 266 ILEMLNISRLDNAVAALGIMRRALS 290 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998874
No 34
>cd01159 NcnH Naphthocyclinone hydroxylase. Naphthocyclinone is an aromatic polyketide and an antibiotic, which is active against Gram-positive bacteria. Polyketides are secondary metabolites, which have important biological functions such as antitumor, immunosupressive or antibiotic activities. NcnH is a hydroxylase involved in the biosynthesis of naphthocyclinone and possibly other polyketides.
Probab=100.00 E-value=7.3e-34 Score=258.57 Aligned_cols=227 Identities=20% Similarity=0.300 Sum_probs=184.5
Q ss_pred HHHHHHhhcCcccccccccCCCCCcHHHHHHHHhCCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhhCCchhhHHHhhhhH
Q 023057 43 VGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNL 122 (288)
Q Consensus 43 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~Gl~~~~~pe~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~~~~~~ 122 (288)
++++ .+.+.+.+.++|+.+.+|. +.|+.|++.||+++.+|++|||.|+++.+.+.+.|++++.|+++++....+. .
T Consensus 3 ~~~~-~~~~~~~a~~~d~~~~~p~--~~~~~l~~~Gl~~~~vP~e~GG~g~~~~~~~~~~e~la~~~~s~a~~~~~~~-~ 78 (370)
T cd01159 3 AEDL-APLIRERAPEAERARRLPD--EVVRALREIGFFRMFVPKRYGGLEGDFAEFAEAIATLAEACGSAAWVASIVA-T 78 (370)
T ss_pred HHHH-HHHHHHhHHHHHHcCCCCH--HHHHHHHHCChHhhCCchhcCCCCCCHHHHHHHHHHHHhhCchHHHHHHHHH-H
Confidence 3444 3346677788899999999 9999999999999999999999999999999999999999999987665554 4
Q ss_pred HHHHHHhcCCHHHHHhhchhHhcCCeeEEEEecCCCCCCCCCCCeEEEEEeCCeEEEeeEeeeeeCCCCCCEEEEEEEeC
Q 023057 123 CINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTD 202 (288)
Q Consensus 123 ~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~v~~~~~ad~~lv~a~~~ 202 (288)
....+..+++++|++.|++.. .+ .++.. ..+.++|++++|||+|||+|.|+|++..+|+++|.++++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~-~~--~~~g~----------~~~~t~A~~~~~gy~lnG~K~~it~~~~ad~~~v~a~~~ 145 (370)
T cd01159 79 HSRMLAAFPPEAQEEVWGDGP-DT--LLAGS----------YAPGGRAERVDGGYRVSGTWPFASGCDHADWILVGAIVE 145 (370)
T ss_pred HHHHHHhCCHHHHHHHhCCCC-Cc--eEEee----------ecCCceeEEeCCeEEEeccccCccCCCcCceeEeeeECC
Confidence 556677789999998887642 11 11111 223568899999999999999999999999999999975
Q ss_pred CCCCCCceEEEEEeCCCCCeEecccccccCCCCCceeeEEeceeeeCCCCcccCCC------ccHH---HHHHhhhHHHH
Q 023057 203 IKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEG------KGVY---VMMSGLDLERL 273 (288)
Q Consensus 203 ~~~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~~~~v~vp~~~~l~~~~------~~~~---~~~~~~~~~r~ 273 (288)
++++..++++|+||++ ||++.+.|+++|+++++++.|+|+||+||++++|+..+ .+.. +.......+++
T Consensus 146 ~~~~~~~~~~~lV~~~--Gv~~~~~~~~~G~r~~~s~~v~f~~v~Vp~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 223 (370)
T cd01159 146 DDDGGPLPRAFVVPRA--EYEIVDTWHVVGLRGTGSNTVVVDDVFVPEHRTLTAGDMMAGDGPGGSTPVYRMPLRQVFPL 223 (370)
T ss_pred CCCCCCcceEEEEEhH--HCEEecccccccccccCCCcEEEcceEcCccceecccccccCCCCCCCCccccCchHHHHHH
Confidence 4434557899999987 89998889999999999999999999999999997532 2211 22345667899
Q ss_pred HHHHHHHHHhhcccC
Q 023057 274 VLAAGPLGIMQAPVR 288 (288)
Q Consensus 274 ~~aa~~~G~a~~al~ 288 (288)
.+++.++|+++++++
T Consensus 224 ~~aa~~lG~a~~~l~ 238 (370)
T cd01159 224 SFAAVSLGAAEGALA 238 (370)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999874
No 35
>cd00567 ACAD Acyl-CoA dehydrogenase. Both mitochondrial acyl-CoA dehydrogenases (ACAD) and peroxisomal acyl-CoA oxidases (AXO) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. In contrast, AXO catalyzes a different oxidative half-reaction, in which the reduced FAD is reoxidized by molecular oxygen. The ACAD family includes the eukaryotic beta-oxidation enzymes, short (SCAD), medium (MCAD), long (LCAD) and very-long (VLCAD) chain acyl-CoA dehydrogenases. These enzymes all share high sequence similarity, but differ in their substrate specificities. The ACAD family also includes amino acid catabolism enzymes such as Isovaleryl-CoA dehydrogenase (IVD), short/branched chain acyl-CoA dehydrogenases(SBCAD), Isob
Probab=100.00 E-value=1.3e-31 Score=239.53 Aligned_cols=208 Identities=39% Similarity=0.731 Sum_probs=183.9
Q ss_pred HHHHHHHHHHHHHHHhhcCcccccccccCCCCCcHHHHHHHHhCCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhhCCchh
Q 023057 34 DTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVG 113 (288)
Q Consensus 34 ~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~Gl~~~~~pe~~GG~g~~~~~~~~v~e~l~~~~~~~~ 113 (288)
++. ++.+.+++|+.+.+.+.....++ ++. ..|+.++++||+
T Consensus 2 ~~~-~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~~g~~--------------------------------- 42 (327)
T cd00567 2 EQR-ELRDSAREFAAEELEPYARERRE---TPE--EPWELLAELGLL--------------------------------- 42 (327)
T ss_pred hHH-HHHHHHHHHHHHhccccHHhHHh---hCC--CCHHHHHHHHHH---------------------------------
Confidence 566 89999999999998887764443 445 568888888887
Q ss_pred hHHHhhhhHHHHHHHhcCCHHHHHhhchhHhcCCeeEEEEecCCCCCCCCCCCeEEEEEeCCeEEEeeEeeeeeCCCCCC
Q 023057 114 LSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQ 193 (288)
Q Consensus 114 ~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~v~~~~~ad 193 (288)
++...|..+|+++|+++||+.+.+|+.+++++++||.+|++...+.++++++++||+|||+|.|++++..||
T Consensus 43 --------~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~sE~~~gs~~~~~~~~a~~~~~g~~l~G~k~~~s~~~~ad 114 (327)
T cd00567 43 --------LGAALLLAYGTEEQKERYLPPLASGEAIAAFALTEPGAGSDLAGIRTTARKDGDGYVLNGRKIFISNGGDAD 114 (327)
T ss_pred --------hchHHHHHhCCHHHHHHHHHHHhCCCceEEEEecCCCCCCchhhCEeEEEEeCCEEEEEEEEEEecCCccCC
Confidence 233467778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEeCCCC-CCCceEEEEEeCCCCCeEecccccccCCCCCceeeEEeceeeeCCCCcccCCCccHHHHHHhhhHHH
Q 023057 194 TLVVYAKTDIKA-GSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLER 272 (288)
Q Consensus 194 ~~lv~a~~~~~~-~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~~~~v~vp~~~~l~~~~~~~~~~~~~~~~~r 272 (288)
+++|.++.+.++ +..++.+|+||.+.||+++.+.|+++|+++++++.++|+||+||++++++..+.++......+..++
T Consensus 115 ~~lv~a~~~~~~~~~~~~~~~lvp~~~~Gv~~~~~~~~~G~~~~~~~~v~~~~v~Vp~~~~l~~~~~g~~~~~~~~~~~~ 194 (327)
T cd00567 115 LFIVLARTDEEGPGHRGISAFLVPADTPGVTVGRIWDKMGMRGSGTGELVFDDVRVPEDNLLGEEGGGFELAMKGLNVGR 194 (327)
T ss_pred EEEEEEEeCCCCCCCCceEEEEEeCCCCCeEeccccccccCCCCceEEEEECCEEecHHHcCCCCCchHHHHHHHHHHHH
Confidence 999999876432 3356789999999999999999999999999999999999999999999988888878888999999
Q ss_pred HHHHHHHHHHhhcccC
Q 023057 273 LVLAAGPLGIMQAPVR 288 (288)
Q Consensus 273 ~~~aa~~~G~a~~al~ 288 (288)
+..++.++|+++++++
T Consensus 195 ~~~aa~~~G~a~~al~ 210 (327)
T cd00567 195 LLLAAVALGAARAALD 210 (327)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999999874
No 36
>KOG1469 consensus Predicted acyl-CoA dehydrogenase [General function prediction only]
Probab=99.97 E-value=8.1e-32 Score=222.94 Aligned_cols=219 Identities=26% Similarity=0.384 Sum_probs=189.5
Q ss_pred HHHHHHhCCCCCCCCCcCC--CCCCCCHHHHHHHHHHHHhhC-CchhhHHHhhhhHHHHHHHhcCCHHHHHhhchhHhcC
Q 023057 70 LWKLMGNFNLHGITAPQEY--GGLGLGYLYHCIAMEEISRAS-GSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISG 146 (288)
Q Consensus 70 ~~~~l~~~Gl~~~~~pe~~--GG~g~~~~~~~~v~e~l~~~~-~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g 146 (288)
+-+..+..|++++++|... -|.|++.++++.+.|..|+.. ++-.+......+.....|.+||+++|+.+||.++++|
T Consensus 32 LKE~aK~eGlWNLFlp~~~qkyg~GLtnveYa~icElmGrs~~APeVfNC~APDTGNMEvl~rYGseeQks~WL~PLLeG 111 (392)
T KOG1469|consen 32 LKEMAKVEGLWNLFLPAVSQKYGAGLTNVEYAHICELMGRSFFAPEVFNCQAPDTGNMEVLHRYGSEEQKSQWLIPLLEG 111 (392)
T ss_pred HHHHHHhcchHHhhhHHHHHhhccCccchhHHHHHHHhccccccchhccCCCCCCCCeeehhhhCCHHHHhhHhHHHhcC
Confidence 3344467999999999753 467899999999999999964 4444444455545667899999999999999999999
Q ss_pred CeeEEEEecCCC-CCCCCCCCeEEEEEeCCeEEEeeEeeeeeCC--CCCCEEEEEEEeCCC--CCCCceEEEEEeCCCCC
Q 023057 147 EHVGALAMSEPN-AGSDVVGMKCKADRVDGGYIINGNKMWCTNG--PVAQTLVVYAKTDIK--AGSKGITAFIIEKGMPG 221 (288)
Q Consensus 147 ~~~~~~a~te~~-~g~d~~~~~~~a~~~~~g~~l~G~k~~v~~~--~~ad~~lv~a~~~~~--~~~~~~~~~lv~~~~~g 221 (288)
+...|+++|||+ ..||..+++++.++++|.|+|||+|||+||+ +.|...+++.+++.. +.++..+++|||.+.||
T Consensus 112 ~irScFaMTEP~VASSDATNIe~SI~r~~~~YvINg~KWw~sga~~PkCrv~i~mGkt~~~~~~rhkQqSmiLVpM~TpG 191 (392)
T KOG1469|consen 112 NIRSCFAMTEPDVASSDATNIECSIRRDGDSYVINGKKWWISGAGDPKCRIAIFMGKTDNTSASRHKQQSMILVPMNTPG 191 (392)
T ss_pred CceeeEeecCCcccccccccceEEEEEcCCEEEEecceeeecCCCCCceEEEEEecccCCCccchhhcccEEEEecCCCC
Confidence 999999999999 6689999999999999999999999999997 667888999998764 34678899999999999
Q ss_pred eEecccccccCCCCCc--eeeEEeceeeeCCCCcccCCCccHHHHHHhhhHHHHHHHHHHHHHhhcccC
Q 023057 222 FSTAQKLDKLGMRGSD--TCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQAPVR 288 (288)
Q Consensus 222 v~~~~~~~~~Gl~~~~--~~~v~~~~v~vp~~~~l~~~~~~~~~~~~~~~~~r~~~aa~~~G~a~~al~ 288 (288)
|.|.++....|....+ ..+++|++|+||+.+++-.++.|+.+.+.-+..+|++.|.-.+|.++++++
T Consensus 192 vkiiRpltVfG~~DapgGH~Ei~F~~VrVP~~NmlLGeGrGFEIaQGRLGPGRiHHcMRliG~aERal~ 260 (392)
T KOG1469|consen 192 VKIIRPLTVFGYTDAPGGHFEIHFENVRVPATNMLLGEGRGFEIAQGRLGPGRIHHCMRLIGLAERALQ 260 (392)
T ss_pred eeEeeeeeeeccccCCCCcceEEEEEEEeeccceeecCCCcceeeccccCCcHHHHHHHHhhHHHHHHH
Confidence 9999998888886654 678999999999999988888999999999999999999999999999874
No 37
>cd01150 AXO Peroxisomal acyl-CoA oxidase. Peroxisomal acyl-CoA oxidases (AXO) catalyze the first set in the peroxisomal fatty acid beta-oxidation, the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. In a second oxidative half-reaction, the reduced FAD is reoxidized by molecular oxygen. AXO is generally a homodimer, but it has been reported to form a different type of oligomer in yeast. There are several subtypes of AXO's, based on substrate specificity. Palmitoyl-CoA oxidase acts on straight-chain fatty acids and prostanoids; whereas, the closely related Trihydroxycoprostanoly-CoA oxidase has the greatest activity for 2-methyl branched side chains of bile precursors. Pristanoyl-CoA oxidase, acts on 2-methyl branched fatty acids. AXO has an additional domain, C-terminal to the region with similarity to acyl-CoA dehydrogenases, which is included in this alignment.
Probab=99.96 E-value=2.7e-29 Score=240.44 Aligned_cols=195 Identities=24% Similarity=0.309 Sum_probs=174.9
Q ss_pred CHHHHHHHHHHHHhhCCchhhHHHhhhhHHHHHHHhcCCHHHHHhhchhHhcCCeeEEEEecCCCCCCCCCCCeEEEEEe
Q 023057 94 GYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRV 173 (288)
Q Consensus 94 ~~~~~~~v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~g~d~~~~~~~a~~~ 173 (288)
++.+...+.|++++.+++++..+..|..++...|..+|+++|+++||+.+.+|+.++|+++|||++|||...++|+|+.+
T Consensus 80 ~~~~~~~~~e~l~~~d~~~~~~~~~h~~l~~~~i~~~Gt~eq~~~~L~~~~~g~~ig~~a~TE~ghGSdv~~leTtAt~d 159 (610)
T cd01150 80 DPEKMLALTNSLGGYDLSLGAKLGLHLGLFGNAIKNLGTDEHQDYWLQGANNLEIIGCFAQTELGHGSNLQGLETTATYD 159 (610)
T ss_pred CHHHHHHHHHHHhccCccccceeeehHHHHHHHHHHhCCHHHHHHHHHHHhccChheeeeccccCcCcCcccceeEEEEC
Confidence 67788889999999998887777788767788899999999999999999999999999999999999999999999998
Q ss_pred C--CeEEEe-----eEeeeeeCCC-CCCEEEEEEEeCCCCCCCceEEEEEeCC-------CCCeEecccccccCCCCCce
Q 023057 174 D--GGYIIN-----GNKMWCTNGP-VAQTLVVYAKTDIKAGSKGITAFIIEKG-------MPGFSTAQKLDKLGMRGSDT 238 (288)
Q Consensus 174 ~--~g~~l~-----G~k~~v~~~~-~ad~~lv~a~~~~~~~~~~~~~~lv~~~-------~~gv~~~~~~~~~Gl~~~~~ 238 (288)
+ ++|+|| |+|+|++|+. .|++++|+|+...+++..++.+|+||.. .|||++.+.++++|+++.++
T Consensus 160 ~~t~efvLntp~~~g~K~wi~~~~~~a~~~vV~Arl~~~g~~~Gv~~FlVp~rd~~~~~~~pGV~i~~~~~k~G~~g~dn 239 (610)
T cd01150 160 PLTQEFVINTPDFTATKWWPGNLGKTATHAVVFAQLITPGKNHGLHAFIVPIRDPKTHQPLPGVTVGDIGPKMGLNGVDN 239 (610)
T ss_pred CCCCeEEECCCCCCceEECccCcccCCCEEEEEEEeccCCCCCCeEEEEEeccccccCCCCCCeEEeecccccCCCCCCe
Confidence 8 889999 9999999874 5999999999865444568999999963 39999988899999999999
Q ss_pred eeEEeceeeeCCCCcccC----------------CCccHHHHHHhhhHHHHHHHHHHHHHhhcccC
Q 023057 239 CELVFENCFVPNENVLGQ----------------EGKGVYVMMSGLDLERLVLAAGPLGIMQAPVR 288 (288)
Q Consensus 239 ~~v~~~~v~vp~~~~l~~----------------~~~~~~~~~~~~~~~r~~~aa~~~G~a~~al~ 288 (288)
+.+.|+||+||.+++|+. ++.++..+...+..+|+.+++.++|++++|++
T Consensus 240 g~l~Fd~vrVP~~nlL~~~~~v~~~G~~~~~~~~~~~g~~~~~~~~~~gRl~ia~~a~g~~~~al~ 305 (610)
T cd01150 240 GFLQFRNVRIPRENLLNRFGDVSPDGTYVSPFKDPNKRYGAMLGTRSGGRVGLIYDAAMSLKKAAT 305 (610)
T ss_pred EEEEEeeeEecHHHhcccccccCCCCceecCCCchhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 999999999999999986 56678888888999999999999999998863
No 38
>PRK11561 isovaleryl CoA dehydrogenase; Provisional
Probab=99.96 E-value=1.6e-28 Score=229.97 Aligned_cols=209 Identities=22% Similarity=0.362 Sum_probs=169.7
Q ss_pred cHHHHHHHHhCCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhhCCchhhHHHhhhhHHHHHHHhcCCHHHHHhhchhHhcC
Q 023057 67 DVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISG 146 (288)
Q Consensus 67 ~~~~~~~l~~~Gl~~~~~pe~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g 146 (288)
.+++++.+.+.||.++..++++| .+. ....+......+...+...+++.++ .++..+..+++++|+++|+|++++|
T Consensus 88 ~~~~~~~~~~~g~~~~~~~~~~~-~~~-~~~~~~~~~l~~~~~~g~~cp~~mT--~~a~~~l~~~~~e~~~~~lp~l~sg 163 (538)
T PRK11561 88 WHLLMQGLCANRVHNLAWEEDAR-SGA-FVARAARFMLHAQVEAGTLCPITMT--FAATPLLLQMLPAPFQDWLTPLLSD 163 (538)
T ss_pred HHHHHHHHHHcCCccCCCCCccC-chH-HHHHHHHHHHHhhhhHHhhchHHHH--HHHHHHHHhcCHHHHHHHHHHHhCC
Confidence 34566777789999999987765 221 2222222223333444443443343 4445566678899999999999999
Q ss_pred C-------------eeEEEEecCCCCCCCCCCCeEEEEEe-CCeEEEeeEeeeeeCCCCCCEEEEEEEeCCCCCCCceEE
Q 023057 147 E-------------HVGALAMSEPNAGSDVVGMKCKADRV-DGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITA 212 (288)
Q Consensus 147 ~-------------~~~~~a~te~~~g~d~~~~~~~a~~~-~~g~~l~G~k~~v~~~~~ad~~lv~a~~~~~~~~~~~~~ 212 (288)
+ .++++++|||++|||...+.|+|++. +|+|+|||+|+|+| +..||+++|+|+++ +++++
T Consensus 164 ~~~~~~~~~~~~~~~~~~~a~TEp~~GSDv~~~~T~A~~~~gg~w~LnG~K~fiS-a~~AD~~lVlArt~-----~Gls~ 237 (538)
T PRK11561 164 RYDSHLLPGGQKRGLLIGMGMTEKQGGSDVLSNTTRAERLADGSYRLVGHKWFFS-VPQSDAHLVLAQAK-----GGLSC 237 (538)
T ss_pred CcccccccchhhhhheeEEEecCCCCCCchhhCeeEEEECCCCeEEEEEEEEEEE-chhhCEEEEEEEEC-----CceEE
Confidence 7 45699999999999999999999994 67799999999999 68999999999986 37999
Q ss_pred EEEeCCCC-----CeEecccccccCCCCCceeeEEeceeeeCCCCcccCCCccHHHHHHhhhHHHHHHHHHHHHHhhccc
Q 023057 213 FIIEKGMP-----GFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGVYVMMSGLDLERLVLAAGPLGIMQAPV 287 (288)
Q Consensus 213 ~lv~~~~~-----gv~~~~~~~~~Gl~~~~~~~v~~~~v~vp~~~~l~~~~~~~~~~~~~~~~~r~~~aa~~~G~a~~al 287 (288)
|+||++.| ||++.+.++++|++++++++|+|+||. +++||.+++|+..+..+++..|+..++.++|++++|+
T Consensus 238 FlVp~~~p~g~~nGv~i~rl~~klG~r~~~t~ev~f~dv~---~~llG~~g~G~~~i~~~l~~~Rl~~a~~a~G~a~~Al 314 (538)
T PRK11561 238 FFVPRFLPDGQRNAIRLERLKDKLGNRSNASSEVEFQDAI---GWLLGEEGEGIRLILKMGGMTRFDCALGSHGLMRRAF 314 (538)
T ss_pred EEEECCCCCCCCCceEEecccccccCCCCceeEEEECCHH---HHHCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988 799988899999999999999999993 7899999999999999999999999999999999987
Q ss_pred C
Q 023057 288 R 288 (288)
Q Consensus 288 ~ 288 (288)
+
T Consensus 315 ~ 315 (538)
T PRK11561 315 S 315 (538)
T ss_pred H
Confidence 4
No 39
>PTZ00460 acyl-CoA dehydrogenase; Provisional
Probab=99.95 E-value=1.3e-27 Score=228.98 Aligned_cols=179 Identities=22% Similarity=0.336 Sum_probs=154.4
Q ss_pred CchhhHHHhhhhHHHHHHHhcCCHHHHHhhchhHhcCCeeEEEEecCCCCCCCCCCCeEEEEEe--CCeEEEe-----eE
Q 023057 110 GSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRV--DGGYIIN-----GN 182 (288)
Q Consensus 110 ~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~g~d~~~~~~~a~~~--~~g~~l~-----G~ 182 (288)
++...++..|..++...|..+|+++|+++|||.+.+|+.++|+++|||++|||..+++|+|+.+ +|+|+|| |+
T Consensus 89 ~~~~~~~~vh~~~~~~~I~~~GT~eQk~~~Lp~~~~ge~ig~~A~TEpghGSdv~~leTtAt~d~~~defvLntPt~~g~ 168 (646)
T PTZ00460 89 PQGTFISTVHFAMVIPAFQVLGTDEQINLWMPSLLNFEIVGCYAQTELGHGSDVQNLETTATYDKQTNEFVIHTPSVEAV 168 (646)
T ss_pred cCCCceEEeeHhhHHHHHHHhCCHHHHHHHHHHHhCCChheeeeecCCCccCCcccceEEEEEcCCCCEEEECCCCCCeE
Confidence 3443445667656667788899999999999999999999999999999999999999999985 6789998 99
Q ss_pred eeeeeC-CCCCCEEEEEEEeCCCCCCCceEEEEEeCC-------CCCeEecccccccCCCCCceeeEEeceeeeCCCCcc
Q 023057 183 KMWCTN-GPVAQTLVVYAKTDIKAGSKGITAFIIEKG-------MPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVL 254 (288)
Q Consensus 183 k~~v~~-~~~ad~~lv~a~~~~~~~~~~~~~~lv~~~-------~~gv~~~~~~~~~Gl~~~~~~~v~~~~v~vp~~~~l 254 (288)
|+|++| +..||+++|+|++..++++.++.+|+||.. .|||++.+..+++|+++.+++.+.|+||+||++++|
T Consensus 169 K~wi~~~g~~A~~~vV~Arl~~~~~~~Gi~~FlV~ird~~~~~~~pGV~vg~~~~k~G~~~~dng~l~Fd~VrVP~~nlL 248 (646)
T PTZ00460 169 KFWPGELGFLCNFALVYAKLIVNGKNKGVHPFMVRIRDKETHKPLQGVEVGDIGPKMGYAVKDNGFLSFDHYRIPLDSLL 248 (646)
T ss_pred EEccCCCCCCCCEEEEEEEECcCCCCCceEEEEEeccccCCCCCCCCeEEeccccccCcCCCCceEEEeceEEECHHHhC
Confidence 999997 689999999999875445568999999932 499999888999999999999999999999999999
Q ss_pred cC------CCc----c-HHHHHHhhhHHHHHHHHHHHHHhhcccC
Q 023057 255 GQ------EGK----G-VYVMMSGLDLERLVLAAGPLGIMQAPVR 288 (288)
Q Consensus 255 ~~------~~~----~-~~~~~~~~~~~r~~~aa~~~G~a~~al~ 288 (288)
+. .+. + +......+...|+.+++.++|++++|++
T Consensus 249 g~~~~v~~~G~~~~~g~~~~~~~~l~~~R~~iaa~~~g~a~~Al~ 293 (646)
T PTZ00460 249 ARYIKVSEDGQVERQGNPKVSYASMMYMRNLIIDQYPRFAAQALT 293 (646)
T ss_pred CcccccCCCCccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 85 332 3 5666777889999999999999998874
No 40
>PLN02443 acyl-coenzyme A oxidase
Probab=99.94 E-value=7.9e-26 Score=217.14 Aligned_cols=173 Identities=24% Similarity=0.360 Sum_probs=147.8
Q ss_pred HHhhhhHHHHHHHhcCCHHHHHhhchhHhcCCeeEEEEecCCCCCCCCCCCeEEEEEe--CCeEEEe-----eEeeeeeC
Q 023057 116 YGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRV--DGGYIIN-----GNKMWCTN 188 (288)
Q Consensus 116 ~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~g~d~~~~~~~a~~~--~~g~~l~-----G~k~~v~~ 188 (288)
+..|..++...|..+|+++|+++|||.+.+|+.++|+++|||++|||..+++|+|+.+ +|+|+|| |+|+|++|
T Consensus 99 ~~~~~~~f~~~I~~~GT~eQk~~~L~~~~~g~iig~fA~TE~ghGSdv~~leTtAt~d~~~~efvIntP~~~g~K~wig~ 178 (664)
T PLN02443 99 TDLHWGMFVPAIKGQGTEEQQKKWLPLAYKMQIIGCYAQTELGHGSNVQGLETTATFDPKTDEFVIHSPTLTSSKWWPGG 178 (664)
T ss_pred eeehHhHHHHHHHHhCCHHHHHHHHHHHhCCChheEEEecCCCcccchhhCeEEEEEeCCCCEEEECCCCCCEEEEeecC
Confidence 4455546667788899999999999999999999999999999999999999999988 6789998 99999999
Q ss_pred C-CCCCEEEEEEEeCCCCCCCceEEEEEeCC-------CCCeEecccccccC---CCCCceeeEEeceeeeCCCCcccCC
Q 023057 189 G-PVAQTLVVYAKTDIKAGSKGITAFIIEKG-------MPGFSTAQKLDKLG---MRGSDTCELVFENCFVPNENVLGQE 257 (288)
Q Consensus 189 ~-~~ad~~lv~a~~~~~~~~~~~~~~lv~~~-------~~gv~~~~~~~~~G---l~~~~~~~v~~~~v~vp~~~~l~~~ 257 (288)
+ ..|++++|+|+...++++.++.+|+||.+ .|||++.+..+++| +++.+++.|.|+||+||.+++|+..
T Consensus 179 ~~~~A~~~vV~Arl~~~~~~~Gv~~FlVp~r~~~~~~~~PGV~vgd~g~K~G~~~~~~~dng~l~Fd~VrVP~~nlLg~~ 258 (664)
T PLN02443 179 LGKVSTHAVVYARLITNGKDHGIHGFIVQLRSLDDHSPLPGVTVGDIGMKFGNGAYNTMDNGFLRFDHVRIPRDQMLMRL 258 (664)
T ss_pred CcccCCEEEEEEEECCCCCCCCeEEEEEecCCcCcCCCCCCeEEeccccccCcccCCCCcceEEEeCcEEECHHHcCCcc
Confidence 6 78999999999865445568999999975 69999988899999 5568899999999999999999753
Q ss_pred ------CccH------HHHHHhhhHHHHHHHHHHHHHhhcccC
Q 023057 258 ------GKGV------YVMMSGLDLERLVLAAGPLGIMQAPVR 288 (288)
Q Consensus 258 ------~~~~------~~~~~~~~~~r~~~aa~~~G~a~~al~ 288 (288)
+... ......+..+|+.+++.++|++++|++
T Consensus 259 ~~v~~~G~~~~~~~~~~~~~~~l~~~R~~i~a~a~g~~~~Al~ 301 (664)
T PLN02443 259 SKVTREGKYVQSDVPRQLVYGTMVYVRQTIVADASTALSRAVC 301 (664)
T ss_pred cccCCCCceecccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2211 234466778899999999999998863
No 41
>KOG0135 consensus Pristanoyl-CoA/acyl-CoA oxidase [Lipid transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.82 E-value=7.9e-20 Score=164.93 Aligned_cols=214 Identities=24% Similarity=0.332 Sum_probs=178.7
Q ss_pred HHHHHHHhCCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhhCCchhhHHHhhhhHHHHHHHhcCCHHHHHhhchhHhcCCe
Q 023057 69 NLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEH 148 (288)
Q Consensus 69 ~~~~~l~~~Gl~~~~~pe~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~ 148 (288)
..|..+.+.|.+.-..-+..- -+......+.|.+|-+|.|++.-++.|..+....+..+|++..++ |+..+-+.+.
T Consensus 81 ~r~~~l~~~gv~~~~~~~~~~---~~~~k~~al~E~lg~yd~sls~K~~lh~~lfg~AV~~~GT~rH~~-yi~~~~n~ev 156 (661)
T KOG0135|consen 81 KRIKRLVELGVFKFWLVEDGP---EAELKKFALTEALGIYDQSLSAKLGLHFLLFGNAVKSMGTKRHHD-YIQKTENYEV 156 (661)
T ss_pred HHHHHHHHhccCcceeecCch---HHHHHHHHHHHHHhhcCcchhhhhhhhhhhhhHHHHhhccHHHHH-HHhhhhccee
Confidence 456777777766544433311 134567889999999999999999999989999999999998877 9999999999
Q ss_pred eEEEEecCCCCCCCCCCCeEEEEEe--CCeEEEe-----eEeeeeeC-CCCCCEEEEEEEeCCCCCCCceEEEEEeCCC-
Q 023057 149 VGALAMSEPNAGSDVVGMKCKADRV--DGGYIIN-----GNKMWCTN-GPVAQTLVVYAKTDIKAGSKGITAFIIEKGM- 219 (288)
Q Consensus 149 ~~~~a~te~~~g~d~~~~~~~a~~~--~~g~~l~-----G~k~~v~~-~~~ad~~lv~a~~~~~~~~~~~~~~lv~~~~- 219 (288)
.+|+++||.++||+..+++|+|+.+ .+.++|| -.|.|+.| +..|++.+|+|+..-++...++..|+|+..+
T Consensus 157 ~gcfamTEl~HGSNt~~I~TtatyDP~t~EfVinTP~~~A~K~WiGn~a~~athavvfa~L~~~g~n~G~H~FiiqIRdp 236 (661)
T KOG0135|consen 157 KGCFAMTELGHGSNTKGIQTTATYDPTTEEFVINTPDFSAIKCWIGNAAKHATHAVVFAQLHVPGQNHGLHGFIIQIRDP 236 (661)
T ss_pred eeeEEEeeecCCccccceeeeeeecCCCCeeEecCCcHHHHHHHhccccccceEEEEEEEeeecCccCceeeEEEEeecc
Confidence 9999999999999999999999988 5779998 67999988 6889999999998665556788899999644
Q ss_pred ------CCeEecccccccCCCCCceeeEEeceeeeCCCCcccC----------------CCccHHHHHHhhhHHHHHHHH
Q 023057 220 ------PGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQ----------------EGKGVYVMMSGLDLERLVLAA 277 (288)
Q Consensus 220 ------~gv~~~~~~~~~Gl~~~~~~~v~~~~v~vp~~~~l~~----------------~~~~~~~~~~~~~~~r~~~aa 277 (288)
|||.|.+.-.++|+.|.+++.+.|++|+||.+++|.. +++.+......+..+|+.++.
T Consensus 237 kT~~t~PgV~igD~G~K~GlnGVDNG~l~F~nvRIPRenLLNr~gDVtpDG~YvSs~k~~~qrfgA~L~~Ls~GRvgIa~ 316 (661)
T KOG0135|consen 237 KTLQTLPGVRIGDCGHKIGLNGVDNGFLWFDNVRIPRENLLNRFGDVTPDGKYVSSFKDPSQRFGASLGSLSSGRVGIAS 316 (661)
T ss_pred cccCCCCCceecccccccccccccCceEEEecccCchHHHhhhccCcCCCCeeeccCCChhhhhchhhcccccchhHHHH
Confidence 7999999999999999999999999999999999843 223344555667789999999
Q ss_pred HHHHHhhcc
Q 023057 278 GPLGIMQAP 286 (288)
Q Consensus 278 ~~~G~a~~a 286 (288)
.++|.+.-+
T Consensus 317 ~ai~~lkla 325 (661)
T KOG0135|consen 317 SAIGALKLA 325 (661)
T ss_pred HHHHHHHHH
Confidence 999887644
No 42
>PF02771 Acyl-CoA_dh_N: Acyl-CoA dehydrogenase, N-terminal domain; InterPro: IPR006092 Mammalian Co-A dehydrogenases (1.3.99.3 from EC) are enzymes that catalyse the first step in each cycle of beta-oxidation in mitochondion. Acyl-CoA dehydrogenases [, , ] catalyze the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with concommitant reduction of enzyme-bound FAD. Reoxidation of the flavin involves transfer of electrons to ETF (electron transfering flavoprotein). These enzymes are homodimers containing one molecule of FAD. The monomeric enzyme is folded into three domains of approximately equal size. The N-terminal and the C-terminal are mainly alpha-helices packed together, and the middle domain consists of two orthogonal beta-sheets. The flavin ring is buried in the crevise between two alpha-helical domains and the beta-sheet of one subunit, and the adenosine pyrophosphate moiety is stretched into the subunit junction with one formed by two C-terminal domains []. The N-terminal domain of Acyl-CoA dehydrogenase is an all-alpha domain, on dimerisation, the N-terminal of one molecule extends into the other dimer and lies on the surface of the molecule.; GO: 0003995 acyl-CoA dehydrogenase activity, 0055114 oxidation-reduction process; PDB: 2WBI_B 1SIQ_A 1SIR_A 2R0N_A 2R0M_A 2DVL_A 1UKW_B 3MDD_B 1UDY_C 3MDE_B ....
Probab=99.82 E-value=2.2e-20 Score=141.30 Aligned_cols=113 Identities=41% Similarity=0.775 Sum_probs=104.9
Q ss_pred CHHHHHHHHHHHHHHHHhhcCcccccccccCCCCCcHHHHHHHHhCCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhhCCc
Q 023057 32 FDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGS 111 (288)
Q Consensus 32 s~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~Gl~~~~~pe~~GG~g~~~~~~~~v~e~l~~~~~~ 111 (288)
|++++ +|++.+++|+++.+.|...++|+++.+|+ +.|+++++.||+++.+|+++||.++++.+.+.+.+++++++++
T Consensus 1 t~~~~-~l~~~~~~~~~~~~~~~~~~~d~~~~~p~--~~~~~l~~~G~~~~~~p~~~GG~~~~~~~~~~~~e~l~~~~~~ 77 (113)
T PF02771_consen 1 TEEQQ-ALREEAREFAEEEIAPHAAEWDEDGRFPR--EVWRALGEAGLLGLAVPEEYGGLGLSPLELAIVLEELARADAS 77 (113)
T ss_dssp SHHHH-HHHHHHHHHHHHHTHHHHHHHHHHTSCHH--HHHHHHHHTTTTSTTSCGGGTSEB-THHHHHHHHHHHHHHTHH
T ss_pred CHHHH-HHHHHHHHHHHHHchHHHHHHHHhCCCCH--HHHHHHHHHHHhhhhccccccCcchhhhhHHHHHHhhhhhccc
Confidence 57888 99999999999999998888888889999 9999999999999999999999999999999999999999999
Q ss_pred hhhHHHhhhhHHHHHHHhcCCHHHHHhhchhHhcCC
Q 023057 112 VGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGE 147 (288)
Q Consensus 112 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~ 147 (288)
+++.+.+|..+++..|..+|+++|+++|||++++|+
T Consensus 78 ~~~~~~~~~~l~~~~i~~~gs~eq~~~~lp~~~~Ge 113 (113)
T PF02771_consen 78 LAFALGVHQSLGAPPIAKFGSEEQKEKWLPRLASGE 113 (113)
T ss_dssp HHHHHHHHHHCHHHHHHHHSHHHHHHHHHHHHHTTS
T ss_pred ccchhhhhhHHHHHHHHHHCCHHHHHHHhHHHhCCC
Confidence 998888887567789999999999999999999986
No 43
>TIGR02309 HpaB-1 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component. This gene for this monooxygenase is found within apparent operons for the degradation of 4-hydroxyphenylacetic acid in Deinococcus, Thermus and Oceanobacillus. Phylogenetic trees support inclusion of the Bacillus halodurans sequence above trusted although the complete 4-hydroxyphenylacetic acid degradation pathway may not exist in that organism. Generally, this enzyme acts with the assistance of a small flavin reductase domain protein (HpaC) to provide the cycle the flavin reductant for the reaction. This family of sequences is a member of a larger subfamily of monooxygenases (pfam03241).
Probab=99.58 E-value=2.4e-14 Score=133.37 Aligned_cols=148 Identities=21% Similarity=0.287 Sum_probs=110.3
Q ss_pred HHHHhhchhHhcCCeeEEEEecCCCCC-C-------CCCCCeEEEEEeCCeEEEeeEeeeeeCCCCCCEEEEEEEeCCCC
Q 023057 134 AQKDKYLPKLISGEHVGALAMSEPNAG-S-------DVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKA 205 (288)
Q Consensus 134 ~~~~~~l~~~~~g~~~~~~a~te~~~g-~-------d~~~~~~~a~~~~~g~~l~G~k~~v~~~~~ad~~lv~a~~~~~~ 205 (288)
+...+|+..+.+.++..+.+++.|..- | |+...--..++++|||+|||.|.|+|++ .||+++|++++...+
T Consensus 127 ~n~~~y~~~~~~~dl~~~~a~~dp~~dRs~~~~~~~d~~~~~~Vve~~~dGiVV~GaK~~~T~~-~ad~~~V~~~~~~~~ 205 (477)
T TIGR02309 127 ENVRNYYEYLRDNDLALTHALTNPQVNRAKPPSEQPDPYIALGVVEQTDKGVIVRGARMTATFP-IADEILIFPSTVLKA 205 (477)
T ss_pred HHHHHHHHHHHHhCceeeccccCCCCCCCCChhhcCCCCcceeEEEEcCCCEEEeCHHHhhhhc-ccceEEEeccCCCCC
Confidence 567889999999999999999998743 2 1111113345678999999999999997 999999998875432
Q ss_pred CC-Cc--eEEEEEeCCCCCeEecccccccCCCCC-----------ceeeEEeceeeeCCCCc--ccCC---CccHHHHHH
Q 023057 206 GS-KG--ITAFIIEKGMPGFSTAQKLDKLGMRGS-----------DTCELVFENCFVPNENV--LGQE---GKGVYVMMS 266 (288)
Q Consensus 206 ~~-~~--~~~~lv~~~~~gv~~~~~~~~~Gl~~~-----------~~~~v~~~~v~vp~~~~--l~~~---~~~~~~~~~ 266 (288)
++ ++ .++|+||.+.||+++....+++|.++. ..+.|.||||+||++++ +|.. +.++....
T Consensus 206 ~~~~~~ya~~F~VP~dtpGl~~i~r~~~~~~~~~~D~plssrfde~da~vvFDdV~VPwe~VF~~g~~e~a~~~f~~~~- 284 (477)
T TIGR02309 206 GAEKDPYALAFAIPTNTPGLHFVCREALDGGDSPFDHPLSSRFEEMDALVIFDDVLVPWERIFILGDVELCNNAYAATG- 284 (477)
T ss_pred ccCCCCeEEEEEeeCCCCceEEEeCCccCCCCCcccCccccccCCCeEEEEeCceeccHHHhhhcCCHHHHHHHHHHHH-
Confidence 32 22 689999999999998777778887765 56899999999999999 7765 44443221
Q ss_pred hhhHHHHHHHHHHHHHhhccc
Q 023057 267 GLDLERLVLAAGPLGIMQAPV 287 (288)
Q Consensus 267 ~~~~~r~~~aa~~~G~a~~al 287 (288)
.++..+..++|.+.+++
T Consensus 285 ----~~~~~~~~~~g~~~~~l 301 (477)
T TIGR02309 285 ----AVNHMAHQVVALKIAKT 301 (477)
T ss_pred ----HHHHHHHHHHHHHHHHH
Confidence 23555666666666554
No 44
>PF02770 Acyl-CoA_dh_M: Acyl-CoA dehydrogenase, middle domain; InterPro: IPR006091 Acyl-CoA dehydrogenases (1.3.99.3 from EC) are a family of flavoproteins that catalyse the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with the concomitant reduction of enzyme-bound FAD. Different family members share a high sequence identity, catalytic mechanisms, and structural properties, but differ in the position of their catalytic bases and in their substrate binding specificity. Butyryl-CoA dehydrogenase [] prefers short chain substrates, medium chain- and long-chain acyl-CoA dehydrogenases prefer medium and long chain substrates, respectively, and Isovaleryl-CoA dehydrogenase [] prefers branched-chain substrates. The monomeric enzyme is folded into three domains of approximately equal size, where the N-terminal domain is all-alpha, the middle domain is an open (5,8) barrel, and the C-terminal domain is a four-helical bundle. The constituent families differ in the numbers of C-terminal domains. This entry represents the middle beta-barrel domain found in medium chain acyl-CoA dehydrogenases, as well as in the related peroxisomal acyl-CoA oxidase-II enzymes. Acyl-CoA oxidase (ACO; 1.3.3.6 from EC) catalyzes the first and rate-determining step of the peroxisomal beta-oxidation of fatty acids [].; GO: 0003995 acyl-CoA dehydrogenase activity, 0055114 oxidation-reduction process; PDB: 3MDD_B 1UDY_C 3MDE_B 2UXW_A 3B96_A 1SIQ_A 1SIR_A 2R0N_A 2R0M_A 2D29_B ....
Probab=99.57 E-value=8.5e-15 Score=94.58 Aligned_cols=52 Identities=42% Similarity=0.763 Sum_probs=47.1
Q ss_pred EEEecCCCCCCCCCCCeEEEEEeCCeEEEeeEeeeeeCCCCCCEEEEEEEeC
Q 023057 151 ALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTD 202 (288)
Q Consensus 151 ~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~v~~~~~ad~~lv~a~~~ 202 (288)
|+++|||++|+|+..+++++++++++|+|||+|.||+++..||+++|+||++
T Consensus 1 ~~a~tE~~~g~d~~~~~t~a~~~~~~~~L~G~K~~v~~~~~a~~~~v~ar~d 52 (52)
T PF02770_consen 1 AFALTEPGAGSDLAAVETTARRDGDGYVLNGEKRFVSNAPDADWFLVFARTD 52 (52)
T ss_dssp EEE--BTTBSSSGGG-SSEEEEETTEEEEEEEEEEEETTTTESEEEEEEEES
T ss_pred CEEEcCCCCCCCcccCEEEeecccceEEEeeEEEEECCcCccCEEEEEEEEC
Confidence 6899999999999999999999999999999999999999999999999974
No 45
>KOG0136 consensus Acyl-CoA oxidase [Lipid transport and metabolism]
Probab=99.56 E-value=4.5e-14 Score=130.61 Aligned_cols=148 Identities=26% Similarity=0.441 Sum_probs=130.2
Q ss_pred hhCCchhhHHHhhhhHHHHHHHhcCCHHHHHhhchhHhcCCeeEEEEecCCCCCCCCCCCeEEEEEeC--CeEEEe----
Q 023057 107 RASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVD--GGYIIN---- 180 (288)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~g~d~~~~~~~a~~~~--~g~~l~---- 180 (288)
+....-+.++..|..+....|..-|++||.++||.+....+.++|.|.||.++|++.+.++|+|+.+. +.++||
T Consensus 102 ~~~~~~~~pl~lH~~MFvp~l~~q~t~EQ~~~Wl~~a~~~~IiGtYAQTElGHGTnl~~LET~AtyD~~T~eFVl~TPt~ 181 (670)
T KOG0136|consen 102 RVLGQEGHPLALHYGMFVPTLKGQGTDEQQEKWLSRALNMEIIGTYAQTELGHGTNLRGLETTATYDPKTQEFVLNTPTL 181 (670)
T ss_pred hccccCCchhhhhhhhhhhHhhcCCCHHHHHHHHHhcccceEEEeehhhhhcccccccccceeeeecCCcceEEecCCCc
Confidence 34444455677887788889999999999999999999999999999999999999999999999875 558876
Q ss_pred -eEeeeeeC-CCCCCEEEEEEEeCCCCCCCceEEEEEeCCC-------CCeEecccccccCCCCCceeeEEeceeeeCCC
Q 023057 181 -GNKMWCTN-GPVAQTLVVYAKTDIKAGSKGITAFIIEKGM-------PGFSTAQKLDKLGMRGSDTCELVFENCFVPNE 251 (288)
Q Consensus 181 -G~k~~v~~-~~~ad~~lv~a~~~~~~~~~~~~~~lv~~~~-------~gv~~~~~~~~~Gl~~~~~~~v~~~~v~vp~~ 251 (288)
..|||-.+ +..++|.+|.|+.-.++...++..|+||..+ |||++.+.-.++|..+..++-+.|+||+||.+
T Consensus 182 ta~KWWPGgLG~ssnhAvV~AqL~~~gk~~G~h~FiV~lRd~~th~pL~Gi~iGDIG~Kmg~ng~dNGfL~f~nvRIPR~ 261 (670)
T KOG0136|consen 182 TATKWWPGGLGKSSNHAVVVAQLITKGKCYGPHPFIVQLRDEDTHKPLPGITVGDIGPKMGFNGVDNGFLGFDNVRIPRT 261 (670)
T ss_pred ceecccCCccccccchheeeeeeeecccccccceeEEEccCccccCCCCCCeecCCCccccccCCccceeeecceeechH
Confidence 89999977 7889999999998766666788899999644 69999999999999999999999999999999
Q ss_pred Ccc
Q 023057 252 NVL 254 (288)
Q Consensus 252 ~~l 254 (288)
+++
T Consensus 262 nmL 264 (670)
T KOG0136|consen 262 NML 264 (670)
T ss_pred hhh
Confidence 998
No 46
>PF11794 HpaB_N: 4-hydroxyphenylacetate 3-hydroxylase N terminal; InterPro: IPR024674 This domain is found in the N terminus of HpaB, which encodes part of the 4-hydroxyphenylacetate 3-hydroxylase from Escherichia coli []. The enzyme is NADH-dependent and uses FAD as the redox chromophore. The domain is also found in pyoverdin chromophore biosynthetic protein (PvcC), which may play a role in one of the proposed hydroxylation steps of pyoverdine chromophore biosynthesis [] and in 4-hydroxybutyryl-CoA dehydratase (4-BUDH), a key enzyme in the metabolism of gamma-aminobutyrate [].; PDB: 3HWC_D 1U8V_D 2YYM_A 2YYI_A 2YYJ_A 2YYL_A 2YYG_A 2YYK_A.
Probab=98.70 E-value=1.9e-07 Score=80.09 Aligned_cols=122 Identities=21% Similarity=0.361 Sum_probs=76.8
Q ss_pred HHHHHhhchhHhcCCeeEEEEecCCCCC-C-CC----CCCeEE-EEEeCCeEEEeeEeeeeeCCCCCCEEEEEEEeC-CC
Q 023057 133 PAQKDKYLPKLISGEHVGALAMSEPNAG-S-DV----VGMKCK-ADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTD-IK 204 (288)
Q Consensus 133 ~~~~~~~l~~~~~g~~~~~~a~te~~~g-~-d~----~~~~~~-a~~~~~g~~l~G~k~~v~~~~~ad~~lv~a~~~-~~ 204 (288)
.+...+|...+.++++..+.+++.|..- | .+ ...-.+ .++++||++|+|.|...|+++.+|.++|+-... ..
T Consensus 122 ~~n~~~y~~~~~~ndL~~t~a~~dPq~DRs~~~~q~d~d~~lrVVee~~dGIvVrGAK~~~T~a~~adei~V~p~~~~~~ 201 (264)
T PF11794_consen 122 AENIRRYYEYVQENDLFLTHAITDPQGDRSKPPHQEDPDVYLRVVEETDDGIVVRGAKMLATGAPYADEILVFPTRAMRP 201 (264)
T ss_dssp HHHHHHHHHHHHHHT--EEEEES--SSSTTSTGGSSSCCSB-EEEEE-SSEEEEEEEEEEEETGCCSSEEEE--SSSSTT
T ss_pred HHHHHHHHHHHHHhCcEeeeeeeCCCcCCCCCccccCCCceEEEEEEcCCCEEEeChhhhhcCCcccccEEEeeccCCCC
Confidence 3457788899999999999999998732 1 11 112233 456789999999999999999999999885432 22
Q ss_pred CCCCceEEEEEeCCCCCeEecccccccCCC--CCc----------eeeEEeceeeeCCCCcc
Q 023057 205 AGSKGITAFIIEKGMPGFSTAQKLDKLGMR--GSD----------TCELVFENCFVPNENVL 254 (288)
Q Consensus 205 ~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~--~~~----------~~~v~~~~v~vp~~~~l 254 (288)
.+..--.+|.||.+.||+++.-......-+ ... -+-|.||||+||+++++
T Consensus 202 ~d~dyAv~FavP~~tpGlk~i~R~s~~~~~~~~~D~PlssrfdE~Da~vvFDdVfVPWeRVF 263 (264)
T PF11794_consen 202 GDEDYAVAFAVPMNTPGLKIICRESYADGRRSPFDHPLSSRFDEMDALVVFDDVFVPWERVF 263 (264)
T ss_dssp CCGGG-EEEEEETT-TTEEEEE---TTGCCG-TTT-TTTTS----EEEEEEEEEEEEGGGEE
T ss_pred CCCceEEEEEccCCCCCEEEEeCCCCCCCccccCcCCcccccCCceEEEEECCcccchhhcc
Confidence 223345689999999999863322111111 011 26788999999999875
No 47
>COG2368 Aromatic ring hydroxylase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.47 E-value=1.4e-06 Score=79.45 Aligned_cols=122 Identities=18% Similarity=0.283 Sum_probs=85.2
Q ss_pred HHHHhhchhHhcCCeeEEEEecCCCCCCCCC--------CCeEEEEEeCCeEEEeeEeeeeeCCCCCCEEEEE-EEeCCC
Q 023057 134 AQKDKYLPKLISGEHVGALAMSEPNAGSDVV--------GMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVY-AKTDIK 204 (288)
Q Consensus 134 ~~~~~~l~~~~~g~~~~~~a~te~~~g~d~~--------~~~~~a~~~~~g~~l~G~k~~v~~~~~ad~~lv~-a~~~~~ 204 (288)
+...+|+..+.+.+...+-+++.|..--+-. ..--....++||++|.|.|..+|++..+|..+|+ .+....
T Consensus 131 ~n~~~~~k~vqk~DL~~~hA~tdpk~dRsk~p~e~~dpdiyvrVvee~~dGIVVrGAK~~aT~~a~tdei~V~Pt~~~~~ 210 (493)
T COG2368 131 ENAREYYKEVQKNDLALTHAITDPKGDRSKRPSEQKDPDIYVRVVEETEDGIVVRGAKALATGSALTDEIFVLPTRSMQE 210 (493)
T ss_pred HHHHHHHHHHHhcCceeeeceecCCccCCCChhhccCCCeeEEEEEEecCceEEEChHHHhccccccceEEEeeccccCC
Confidence 5677899999999999999999987432111 1112234568999999999999999999999888 554433
Q ss_pred CCCCceEEEEEeCCCCCeEecccc--c-ccCCCCCce------------eeEEeceeeeCCCCccc
Q 023057 205 AGSKGITAFIIEKGMPGFSTAQKL--D-KLGMRGSDT------------CELVFENCFVPNENVLG 255 (288)
Q Consensus 205 ~~~~~~~~~lv~~~~~gv~~~~~~--~-~~Gl~~~~~------------~~v~~~~v~vp~~~~l~ 255 (288)
++.+--.+|.+|.+.|||.+.-.. + .-|+.+.+. +-|.||||+||+++++-
T Consensus 211 ~d~dfAv~FaiP~dt~GvK~i~r~s~~~~~~~~~g~fd~plssrfde~dailVfDdVfVPWERVf~ 276 (493)
T COG2368 211 DDKDFAVAFAIPMDTEGVKFICRRSYELGRGAEGGPFDYPLSSRFDENDAILVFDDVFVPWERVFI 276 (493)
T ss_pred CCCceEEEEEcccCCCceEEEecCcchhhcccCCCCCCCccccccccCceEEEecccccchhheee
Confidence 223345679999999998852221 1 111111121 44899999999999873
No 48
>TIGR02310 HpaB-2 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component. This gene for this monooxygenase is found within apparent operons for the degradation of 4-hydroxyphenylacetic acid in Shigella, Photorhabdus and Pasteurella. The family modelled by this alignment is narrowly limited to gammaproteobacteria to exclude other aromatic hydroxylases involved in various secondary metabolic pathways. Generally, this enzyme acts with the assistance of a small flavin reductase domain protein (HpaC) to provide the cycle the flavin reductant for the reaction. This family of sequences is a member of a larger subfamily of monooxygenases (pfam03241).
Probab=98.44 E-value=5.4e-06 Score=77.77 Aligned_cols=121 Identities=16% Similarity=0.192 Sum_probs=84.0
Q ss_pred HHHHHhhchhHhcCCeeEEEEecCCCCCCCC------CCCeEEEEEeCCeEEEeeEeeeeeCCCCCCEEEE-EEEe--CC
Q 023057 133 PAQKDKYLPKLISGEHVGALAMSEPNAGSDV------VGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVV-YAKT--DI 203 (288)
Q Consensus 133 ~~~~~~~l~~~~~g~~~~~~a~te~~~g~d~------~~~~~~a~~~~~g~~l~G~k~~v~~~~~ad~~lv-~a~~--~~ 203 (288)
.+...+|+..+.+.++..+.+++.|..--.. ...--..+++++|++|+|.|...|+++.+|.++| .... ..
T Consensus 135 ~~n~~~yy~~~qenDL~~~hA~~dPk~DRsk~p~e~~D~~v~VVee~~dGIVVrGAK~~aT~a~~a~ei~V~~~~~~~~~ 214 (519)
T TIGR02310 135 EDNARNWYKRIQESCLYFNHAIVNPPIDRNKPIDQVKDVYIKIEEERDDGIVVSGAKVVATNSALTHYNFIGFGSAQIIG 214 (519)
T ss_pred HHHHHHHHHHHHHhCceeecceeCCCCCCCCccccCCCCceEEEEEcCCcEEEeCHHHHhcccchhcceeeccCcccccC
Confidence 3567889999999999999999988743111 1112334566899999999999999999999888 3333 11
Q ss_pred CCCCCceEEEEEeCCCCCeEecccccccC---------CC-------CCceeeEEeceeeeCCCCccc
Q 023057 204 KAGSKGITAFIIEKGMPGFSTAQKLDKLG---------MR-------GSDTCELVFENCFVPNENVLG 255 (288)
Q Consensus 204 ~~~~~~~~~~lv~~~~~gv~~~~~~~~~G---------l~-------~~~~~~v~~~~v~vp~~~~l~ 255 (288)
+ +.+--..|.||.+.||+++.-.. ... .+ .-.-+-|.||||+||+++|+-
T Consensus 215 ~-d~dyAvaFavP~dtpGlk~IcR~-s~~~~~~~~~~~fD~PlssrfdE~Da~vVFDdVfVPWErVF~ 280 (519)
T TIGR02310 215 D-NDDFALMFIAPMDAEGVKLICRH-SYELVAGATGSPFDYPLSSRFDENDAILVMDSVFIPWENVLI 280 (519)
T ss_pred C-CCCeEEEEEeEcCCCceEEEeCC-chhhccccCCCCCcCccccccCCceEEEEeCCcccchHHcee
Confidence 1 22234579999999999964221 111 11 011266889999999999983
No 49
>PF14749 Acyl-CoA_ox_N: Acyl-coenzyme A oxidase N-terminal; PDB: 2FON_A 1W07_B 1IS2_B 2DDH_A.
Probab=89.79 E-value=0.35 Score=36.78 Aligned_cols=35 Identities=31% Similarity=0.488 Sum_probs=27.8
Q ss_pred hHHHhhhhHHHHHHHhcCCHHHHHhhchhHhcCCe
Q 023057 114 LSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEH 148 (288)
Q Consensus 114 ~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~ 148 (288)
.++..|..+....|...|++||+++|+|...+.+.
T Consensus 90 ~p~~lH~~mFip~I~~qgt~EQ~~~Wlp~a~~~~I 124 (125)
T PF14749_consen 90 LPLGLHFGMFIPTIMGQGTEEQQAKWLPKAENYEI 124 (125)
T ss_dssp -THHHHHHTHHHHHHHHS-HHHHHHHHHHHHTTSS
T ss_pred chhhhHHHHHHHHHHHcCCHHHHHHHHHHHHCCcc
Confidence 33558877888999999999999999999877653
No 50
>PF02084 Bindin: Bindin; InterPro: IPR000775 Bindin, the major protein component of the acrosome granule of sea urchin sperm, mediates species-specific adhesion of sperm to the egg surface during fertilisation [, ]. The protein coats the acrosomal process after externalisation by the acrosome reaction; it binds to sulphated, fucose-containing polysaccharides on the vitelline-layer receptor proteoglycans that cover the egg plasma membrane. Bindins from different genera show high levels of sequence similarity in both the mature bindin domain and in the probindin precursor region. The most highly conserved region is a 42-residue segment in the central portion of the mature bindin protein. This domain may be responsible for conserved functions of bindin, while the more highly divergent flanking regions may be responsible for its species-specific properties [].; GO: 0007342 fusion of sperm to egg plasma membrane
Probab=33.69 E-value=1.5e+02 Score=24.96 Aligned_cols=67 Identities=13% Similarity=0.250 Sum_probs=49.4
Q ss_pred cccCCCCCcHHHHHHHHh-CCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhhCCchhhHHHhhhhHHHHHHHhcCCHHHHH
Q 023057 59 DQSNSFPQDVNLWKLMGN-FNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKD 137 (288)
Q Consensus 59 d~~~~~~~~~~~~~~l~~-~Gl~~~~~pe~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 137 (288)
++...+.. ++.+++|. +|-+++.+|-+- -++.++-.+++-|-. |+ .+|+..|.++.|+
T Consensus 96 EEetTISA--Kvm~~ikavLgaTKiDLPVDI----NDPYDlGLLLRhLRH-----------HS----NLLAnIgdP~Vre 154 (238)
T PF02084_consen 96 EEETTISA--KVMEDIKAVLGATKIDLPVDI----NDPYDLGLLLRHLRH-----------HS----NLLANIGDPEVRE 154 (238)
T ss_pred CCCccccH--HHHHHHHHHhccccccccccc----CChhhHHHHHHHHHH-----------HH----HHHhhcCCHHHHH
Confidence 45677788 88888876 899999999752 266777777766532 22 5778889999999
Q ss_pred hhchhHhcC
Q 023057 138 KYLPKLISG 146 (288)
Q Consensus 138 ~~l~~~~~g 146 (288)
+.|..+-+.
T Consensus 155 qVLsAMqEe 163 (238)
T PF02084_consen 155 QVLSAMQEE 163 (238)
T ss_pred HHHHHHhhh
Confidence 988776644
No 51
>PF04115 Ureidogly_hydro: Ureidoglycolate hydrolase ; InterPro: IPR007247 Ureidoglycolate hydrolase (3.5.3.19 from EC) carries out the third step in the degradation of allantoin.; GO: 0004848 ureidoglycolate hydrolase activity, 0000256 allantoin catabolic process; PDB: 1YQC_B 1XSR_A 2BDR_B 1XSQ_A.
Probab=33.68 E-value=1.2e+02 Score=24.26 Aligned_cols=48 Identities=19% Similarity=0.201 Sum_probs=29.4
Q ss_pred eEeeeeeCCCCCCEEEEEEEeCCCCCCCceEEEEEeCCCCCeEeccc-cc
Q 023057 181 GNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQK-LD 229 (288)
Q Consensus 181 G~k~~v~~~~~ad~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~-~~ 229 (288)
++-.|++.....++++|.|..++.++...+..|+++... ||.+.+. |.
T Consensus 80 tsQ~fiPl~~~~~~lvvVA~~~~~Pd~~~lrAF~~~~gq-gV~~~~GvWH 128 (165)
T PF04115_consen 80 TSQAFIPLDGSPWYLVVVAPDDDGPDPETLRAFLAPGGQ-GVNYHRGVWH 128 (165)
T ss_dssp B-EEEEESBS---EEEEEEESSSS-ECCCEEEEEE-SS--EEEE-TT-EE
T ss_pred eeEEEEECCCCccEEEEEcCCCCCCCccceEEEEEcCCE-EEEECCCcee
Confidence 777888877655588888886654455678999999765 6776333 54
No 52
>PF05284 DUF736: Protein of unknown function (DUF736); InterPro: IPR007948 This family consists of several uncharacterised bacterial proteins of unknown function.
Probab=30.59 E-value=1.6e+02 Score=21.70 Aligned_cols=63 Identities=16% Similarity=0.157 Sum_probs=40.6
Q ss_pred eeEeeeeeCCCCCCEEEEEEEeCCCCCCCceEEEEEeCCCCCeEecccccccCCC-CCceeeEEecee
Q 023057 180 NGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMR-GSDTCELVFENC 246 (288)
Q Consensus 180 ~G~k~~v~~~~~ad~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~-~~~~~~v~~~~v 246 (288)
.|+-. |..-.++..+|.......+..+++.+++-+.+ ++++...|...+-+ +...-+|.+|+=
T Consensus 15 ~G~I~--TL~~~~~i~lvP~~~~~~e~aPdyRV~~~~~~--~~EvGaaW~~~~~~tg~~Ylsl~LddP 78 (107)
T PF05284_consen 15 TGRIR--TLTLDAKIRLVPNESKDSENAPDYRVYAGPRG--GVEVGAAWKKTSKDTGRDYLSLKLDDP 78 (107)
T ss_pred EEEEE--EeEecccEEEEeCCCCCCCCCCCEEEEecCCC--CCceeeeehhhccccCCceEEEEEcCC
Confidence 45533 33445667666655423333345555554333 89999999998887 788889999875
No 53
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=21.36 E-value=1.2e+02 Score=20.04 Aligned_cols=52 Identities=13% Similarity=0.129 Sum_probs=29.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhc-CcccccccccCCCC-C--cHHHHHHHHhCCCCC
Q 023057 29 SLLFDDTQLQFKESVGQFARENI-APRAANIDQSNSFP-Q--DVNLWKLMGNFNLHG 81 (288)
Q Consensus 29 ~~~s~~~~~~l~~~~~~~~~~~~-~~~~~~~d~~~~~~-~--~~~~~~~l~~~Gl~~ 81 (288)
..|++.|. ++++-+++|..+.- .|..+++-+.=.+. . -+...+.|.+.|++.
T Consensus 2 ~~LT~rQ~-~vL~~I~~~~~~~G~~Pt~rEIa~~~g~~S~~tv~~~L~~Le~kG~I~ 57 (65)
T PF01726_consen 2 KELTERQK-EVLEFIREYIEENGYPPTVREIAEALGLKSTSTVQRHLKALERKGYIR 57 (65)
T ss_dssp ----HHHH-HHHHHHHHHHHHHSS---HHHHHHHHTSSSHHHHHHHHHHHHHTTSEE
T ss_pred CCCCHHHH-HHHHHHHHHHHHcCCCCCHHHHHHHhCCCChHHHHHHHHHHHHCcCcc
Confidence 35889999 99999999987643 56666654433332 1 124567777888753
No 54
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=20.17 E-value=3.3e+02 Score=23.77 Aligned_cols=59 Identities=15% Similarity=0.207 Sum_probs=40.1
Q ss_pred CCCHHHHHHHHHHHHHHHHhhcCcc-----cccccccCCCCCcHHHHHHHHhCCCCCCCCCcCCCCCC
Q 023057 30 LLFDDTQLQFKESVGQFARENIAPR-----AANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLG 92 (288)
Q Consensus 30 ~~s~~~~~~l~~~~~~~~~~~~~~~-----~~~~d~~~~~~~~~~~~~~l~~~Gl~~~~~pe~~GG~g 92 (288)
+||.-|. +++++.-.+-+++-++- +....++...-+ ...+.|+.+||.- .+|...||+-
T Consensus 3 ~LT~~Qk-eIL~aLi~LY~~~~r~IKgeeIA~~l~rnpGTVR--Nqmq~LkaLgLVe-gvpGPkGGY~ 66 (294)
T COG2524 3 ELTSSQK-EILQALINLYRRKKRPIKGEEIAEVLNRNPGTVR--NQMQSLKALGLVE-GVPGPKGGYK 66 (294)
T ss_pred cccHHHH-HHHHHHHHHHHhcCCCcchHHHHHHHccCcchHH--HHHHHHHhcCccc-cccCCCCCcc
Confidence 5788888 66666666545554433 223455555556 7889999999984 6888889973
No 55
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=20.08 E-value=2.5e+02 Score=26.22 Aligned_cols=68 Identities=13% Similarity=0.198 Sum_probs=43.3
Q ss_pred eCCeEEEeeEeeeeeCCCCCCEEEEEEEeCCCCCCCceEEEEEeCCCCCeEecccccccCCCCCceeeEEecee
Q 023057 173 VDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENC 246 (288)
Q Consensus 173 ~~~g~~l~G~k~~v~~~~~ad~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~~~~v 246 (288)
..-...|-|+||+|-|-.+-.-+++-. ++ ...++++--...--+.|....+.+-++++....|.||++
T Consensus 323 ~pp~~ELeGkkW~VEnq~~~~~~Vi~~-~e-----~kqsvyIykC~~s~iqIkGKvNsItld~Ckk~svVfD~~ 390 (480)
T KOG2675|consen 323 KPPVKELEGKKWRVENQENNKNLVIDD-AE-----LKQSVYIYKCSNSTIQIKGKVNSITLDNCKKTSVVFDDL 390 (480)
T ss_pred CCCceeeccceEEEeeecCCcceeeee-cc-----ccceEEEEeccceEEEEeceeeeEEecCCceeeEEEecc
Confidence 344567889999998864444433332 12 234566666555445566666777777888888888876
Done!