Query 023059
Match_columns 288
No_of_seqs 183 out of 1410
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 08:09:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023059.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023059hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3090 Prohibitin-like protei 100.0 5.2E-52 1.1E-56 338.0 25.7 286 1-286 1-286 (290)
2 PRK11029 FtsH protease regulat 100.0 7.9E-46 1.7E-50 331.5 28.5 251 25-281 7-327 (334)
3 TIGR01932 hflC HflC protein. H 100.0 2.6E-45 5.7E-50 329.1 28.9 250 25-280 7-316 (317)
4 cd03401 Band_7_prohibitin Band 100.0 7.9E-42 1.7E-46 287.8 23.1 195 37-232 1-196 (196)
5 cd03405 Band_7_HflC Band_7_Hfl 100.0 3.9E-41 8.4E-46 292.6 25.2 216 38-256 1-240 (242)
6 KOG3083 Prohibitin [Posttransl 100.0 6.7E-42 1.4E-46 278.7 17.5 258 22-279 11-270 (271)
7 TIGR01933 hflK HflK protein. H 100.0 4.3E-40 9.4E-45 289.0 26.9 234 38-280 1-258 (261)
8 PRK10930 FtsH protease regulat 100.0 3.5E-39 7.5E-44 296.1 30.0 239 24-273 83-346 (419)
9 cd03407 Band_7_4 A subgroup of 100.0 4.4E-38 9.5E-43 276.1 26.2 225 43-274 1-251 (262)
10 cd03404 Band_7_HflK Band_7_Hfl 100.0 5.3E-38 1.1E-42 276.6 26.5 227 25-257 2-265 (266)
11 cd03406 Band_7_3 A subgroup of 100.0 1.4E-36 3.1E-41 265.7 23.8 199 34-234 1-209 (280)
12 cd03403 Band_7_stomatin_like B 100.0 2.2E-36 4.7E-41 258.3 24.2 210 41-273 1-215 (215)
13 COG0330 HflC Membrane protease 100.0 8.5E-33 1.8E-37 246.5 27.5 237 26-273 9-277 (291)
14 KOG2621 Prohibitins and stomat 100.0 2.1E-34 4.6E-39 243.2 15.4 226 30-277 47-277 (288)
15 cd03402 Band_7_2 A subgroup of 100.0 5.6E-31 1.2E-35 224.1 19.8 161 37-203 1-169 (219)
16 PF01145 Band_7: SPFH domain / 100.0 3.1E-30 6.6E-35 213.6 9.7 162 39-204 1-167 (179)
17 smart00244 PHB prohibitin homo 100.0 8.9E-29 1.9E-33 201.2 16.2 156 36-197 1-159 (160)
18 KOG2620 Prohibitins and stomat 99.9 8.4E-28 1.8E-32 200.9 8.6 189 36-231 5-197 (301)
19 KOG2962 Prohibitin-related mem 99.9 6.8E-24 1.5E-28 174.4 22.7 234 30-273 15-300 (322)
20 cd03400 Band_7_1 A subgroup of 99.9 3.2E-21 7E-26 150.5 12.8 121 77-197 2-123 (124)
21 cd03408 Band_7_5 A subgroup of 99.9 8.3E-21 1.8E-25 161.1 15.2 161 33-197 11-206 (207)
22 COG2268 Uncharacterized protei 99.8 2.2E-18 4.7E-23 160.4 20.6 180 21-200 17-217 (548)
23 cd03399 Band_7_flotillin Band_ 99.7 3.3E-17 7.1E-22 128.6 10.5 116 78-195 2-125 (128)
24 KOG2668 Flotillins [Intracellu 99.7 7E-16 1.5E-20 134.3 15.3 160 38-201 2-171 (428)
25 cd02106 Band_7 The band 7 doma 99.6 2.5E-14 5.4E-19 110.1 12.0 106 89-197 14-120 (121)
26 PF13421 Band_7_1: SPFH domain 99.6 9.7E-14 2.1E-18 117.4 16.1 162 34-197 12-206 (211)
27 COG4260 Membrane protease subu 98.9 3.2E-08 7E-13 84.7 14.1 164 33-197 36-233 (345)
28 PTZ00491 major vault protein; 98.3 4.5E-05 9.7E-10 75.2 17.6 146 39-188 465-642 (850)
29 PF12127 YdfA_immunity: SigmaW 98.0 5.6E-05 1.2E-09 64.9 10.6 172 81-261 123-311 (316)
30 PRK13665 hypothetical protein; 97.8 0.00022 4.7E-09 61.1 9.6 152 81-241 128-292 (316)
31 COG1580 FliL Flagellar basal b 97.1 0.051 1.1E-06 43.9 15.1 80 96-185 76-157 (159)
32 COG4864 Uncharacterized protei 95.2 0.18 3.9E-06 42.4 8.9 159 92-259 139-313 (328)
33 PRK12785 fliL flagellar basal 94.8 1 2.2E-05 36.7 12.3 52 131-184 110-163 (166)
34 cd03405 Band_7_HflC Band_7_Hfl 93.5 0.42 9E-06 41.2 8.1 79 160-239 120-200 (242)
35 PF11978 MVP_shoulder: Shoulde 93.2 0.36 7.9E-06 36.5 6.1 97 90-187 10-117 (118)
36 cd03404 Band_7_HflK Band_7_Hfl 91.6 1.4 3.1E-05 38.5 9.1 82 161-243 143-228 (266)
37 PRK06654 fliL flagellar basal 91.5 7 0.00015 32.2 12.2 76 97-184 101-176 (181)
38 TIGR01932 hflC HflC protein. H 91.3 1.5 3.3E-05 39.6 9.1 33 208-240 224-256 (317)
39 PRK11029 FtsH protease regulat 91.2 1.5 3.2E-05 40.0 8.9 63 178-240 202-266 (334)
40 PRK05696 fliL flagellar basal 90.8 7.9 0.00017 31.6 13.0 54 131-184 110-167 (170)
41 PF03748 FliL: Flagellar basal 90.6 5 0.00011 29.2 9.9 52 131-184 43-96 (99)
42 PRK08455 fliL flagellar basal 89.0 12 0.00026 31.0 13.0 52 131-184 126-179 (182)
43 PRK07021 fliL flagellar basal 87.3 14 0.0003 29.8 12.4 54 131-184 102-159 (162)
44 PRK07718 fliL flagellar basal 86.9 8.4 0.00018 30.4 9.4 52 131-184 86-139 (142)
45 cd03407 Band_7_4 A subgroup of 86.8 4.3 9.3E-05 35.5 8.5 29 211-239 163-191 (262)
46 PRK05697 flagellar basal body- 82.3 22 0.00048 27.9 10.0 54 131-184 77-134 (137)
47 PLN03086 PRLI-interacting fact 78.8 2.7 5.9E-05 40.9 4.2 50 220-274 51-100 (567)
48 TIGR01933 hflK HflK protein. H 77.9 15 0.00032 32.0 8.3 11 178-188 134-144 (261)
49 COG2268 Uncharacterized protei 77.1 16 0.00035 35.4 8.8 30 212-241 420-449 (548)
50 cd03403 Band_7_stomatin_like B 76.3 7.8 0.00017 32.5 6.0 71 155-233 115-186 (215)
51 PRK06568 F0F1 ATP synthase sub 72.0 50 0.0011 26.5 9.8 8 147-154 29-36 (154)
52 PRK01558 V-type ATP synthase s 70.3 30 0.00065 28.9 8.0 8 266-273 121-128 (198)
53 COG0330 HflC Membrane protease 68.2 21 0.00046 31.5 7.1 76 155-231 144-224 (291)
54 KOG2668 Flotillins [Intracellu 63.2 91 0.002 28.5 9.8 23 251-273 358-384 (428)
55 PRK04057 30S ribosomal protein 62.6 52 0.0011 27.7 7.9 82 89-181 100-183 (203)
56 PTZ00399 cysteinyl-tRNA-synthe 59.4 1.1E+02 0.0023 30.8 10.7 39 161-199 519-562 (651)
57 PRK10930 FtsH protease regulat 59.3 33 0.00071 32.4 6.8 8 179-186 231-238 (419)
58 PRK01005 V-type ATP synthase s 55.8 75 0.0016 26.8 7.8 8 241-248 106-113 (207)
59 PRK14475 F0F1 ATP synthase sub 55.8 88 0.0019 25.2 8.1 18 147-164 35-53 (167)
60 PRK13460 F0F1 ATP synthase sub 55.7 1.1E+02 0.0024 24.8 9.3 16 146-161 40-56 (173)
61 PRK02292 V-type ATP synthase s 52.9 61 0.0013 26.6 6.8 10 214-223 34-43 (188)
62 PRK14474 F0F1 ATP synthase sub 52.8 88 0.0019 27.2 8.0 19 146-164 29-48 (250)
63 PRK14471 F0F1 ATP synthase sub 51.5 1.1E+02 0.0024 24.5 8.0 18 146-163 32-50 (164)
64 PF01015 Ribosomal_S3Ae: Ribos 51.1 72 0.0016 26.7 6.9 83 89-185 106-188 (194)
65 TIGR03321 alt_F1F0_F0_B altern 50.9 97 0.0021 26.8 8.0 19 146-164 29-48 (246)
66 KOG0742 AAA+-type ATPase [Post 50.8 58 0.0013 30.8 6.7 23 208-230 206-228 (630)
67 PRK13461 F0F1 ATP synthase sub 50.5 1.2E+02 0.0026 24.1 8.0 17 146-162 29-46 (159)
68 PRK08475 F0F1 ATP synthase sub 49.1 1.4E+02 0.0031 24.1 9.3 16 146-161 46-62 (167)
69 PRK06231 F0F1 ATP synthase sub 48.9 1.6E+02 0.0035 24.7 9.3 15 147-161 73-88 (205)
70 cd03406 Band_7_3 A subgroup of 48.2 1.3E+02 0.0028 26.7 8.4 22 241-270 258-279 (280)
71 CHL00019 atpF ATP synthase CF0 47.6 1.6E+02 0.0034 24.2 9.3 20 145-164 47-67 (184)
72 PF09432 THP2: Tho complex sub 47.0 1.3E+02 0.0029 23.2 8.4 37 160-196 10-46 (132)
73 PRK14472 F0F1 ATP synthase sub 46.8 1.6E+02 0.0034 23.9 9.3 16 146-161 42-58 (175)
74 PRK13453 F0F1 ATP synthase sub 41.6 1.9E+02 0.0041 23.4 9.3 17 146-162 42-59 (173)
75 PRK13455 F0F1 ATP synthase sub 41.0 1.4E+02 0.003 24.4 7.2 17 147-163 52-69 (184)
76 PRK05759 F0F1 ATP synthase sub 39.8 1.6E+02 0.0035 23.1 7.2 8 147-154 29-36 (156)
77 PRK09173 F0F1 ATP synthase sub 39.6 1.9E+02 0.0042 22.9 9.7 8 147-154 27-34 (159)
78 cd03401 Band_7_prohibitin Band 38.9 78 0.0017 25.9 5.4 20 219-238 172-191 (196)
79 PRK09174 F0F1 ATP synthase sub 38.1 2.4E+02 0.0053 23.7 9.3 19 146-164 77-96 (204)
80 CHL00118 atpG ATP synthase CF0 38.0 2E+02 0.0044 22.8 9.8 15 147-161 47-62 (156)
81 PRK14473 F0F1 ATP synthase sub 37.6 1.8E+02 0.0039 23.2 7.2 18 146-163 32-50 (164)
82 PRK02292 V-type ATP synthase s 36.4 67 0.0014 26.4 4.6 25 211-235 20-44 (188)
83 PRK13428 F0F1 ATP synthase sub 36.3 3.4E+02 0.0074 25.8 9.8 17 147-163 26-43 (445)
84 PF11190 DUF2976: Protein of u 36.3 17 0.00038 26.1 0.9 32 3-35 50-81 (87)
85 PRK07352 F0F1 ATP synthase sub 35.9 2.3E+02 0.0051 22.8 9.3 16 146-161 43-59 (174)
86 PRK07353 F0F1 ATP synthase sub 35.0 2.1E+02 0.0046 22.0 7.2 8 147-154 30-37 (140)
87 PRK13454 F0F1 ATP synthase sub 34.7 2E+02 0.0044 23.5 7.1 10 146-155 55-64 (181)
88 PRK15322 invasion protein OrgB 34.2 1.4E+02 0.003 25.2 5.9 10 265-274 112-121 (210)
89 PRK12613 galactose-6-phosphate 34.0 34 0.00074 27.0 2.3 35 159-194 12-46 (141)
90 COG1890 RPS1A Ribosomal protei 33.3 2.9E+02 0.0062 23.4 7.6 71 85-166 104-176 (214)
91 TIGR01144 ATP_synt_b ATP synth 32.7 2.4E+02 0.0051 21.9 7.2 8 147-154 20-27 (147)
92 PF10717 ODV-E18: Occlusion-de 30.0 64 0.0014 22.9 2.8 10 62-71 58-67 (85)
93 KOG2007 Cysteinyl-tRNA synthet 29.1 3.1E+02 0.0067 26.6 7.9 9 170-178 505-513 (586)
94 KOG2620 Prohibitins and stomat 28.4 95 0.0021 27.3 4.1 154 105-274 88-275 (301)
95 TIGR02499 HrpE_YscL_not type I 28.0 2E+02 0.0043 22.7 6.0 8 266-273 116-123 (166)
96 PRK09098 type III secretion sy 27.9 1.3E+02 0.0028 25.9 5.1 7 267-273 154-160 (233)
97 PRK09738 small toxic polypepti 27.2 1.8E+02 0.0039 18.8 4.6 40 6-49 1-43 (52)
98 PRK06569 F0F1 ATP synthase sub 26.9 3.4E+02 0.0073 21.8 9.4 17 147-163 35-52 (155)
99 COG0711 AtpF F0F1-type ATP syn 26.7 3.4E+02 0.0073 21.8 9.7 16 146-161 30-46 (161)
100 TIGR03745 conj_TIGR03745 integ 25.7 18 0.00038 26.9 -0.6 32 3-35 66-97 (104)
101 TIGR01120 rpiB ribose 5-phosph 24.7 65 0.0014 25.5 2.4 30 159-188 11-43 (143)
102 PF08621 RPAP1_N: RPAP1-like, 22.3 1.3E+02 0.0029 19.0 3.0 32 138-169 8-39 (49)
103 PF06188 HrpE: HrpE/YscL/FliH 21.9 4.6E+02 0.01 21.7 7.5 17 207-223 43-59 (191)
104 PF02502 LacAB_rpiB: Ribose/Ga 21.3 76 0.0017 25.0 2.2 26 160-185 12-37 (140)
105 KOG4737 ATPase membrane sector 21.2 1.3E+02 0.0029 26.5 3.7 38 17-55 283-320 (326)
106 PF06188 HrpE: HrpE/YscL/FliH 21.1 4.8E+02 0.01 21.6 7.0 11 263-273 130-140 (191)
107 PF10234 Cluap1: Clusterin-ass 20.9 5.8E+02 0.013 22.5 9.5 37 211-247 188-225 (267)
108 TIGR00689 rpiB_lacA_lacB sugar 20.9 82 0.0018 25.0 2.3 35 159-194 10-47 (144)
109 PRK06231 F0F1 ATP synthase sub 20.5 5.1E+02 0.011 21.7 8.0 8 35-42 26-33 (205)
110 KOG4753 Predicted membrane pro 20.3 2E+02 0.0043 22.0 4.0 34 30-66 67-100 (124)
111 PLN03094 Substrate binding sub 20.2 3.3E+02 0.0072 25.3 6.4 6 5-10 75-80 (370)
No 1
>KOG3090 consensus Prohibitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.2e-52 Score=338.00 Aligned_cols=286 Identities=77% Similarity=1.112 Sum_probs=278.2
Q ss_pred CCCCCccCCCCCCCCchhHHHHHHHHHHHHHHHhhccEEEecCCeEEEEEeeeccccceeeCCcceeecccccceEEEee
Q 023059 1 MNFNNVKVPKMPGGGAVSALIKVGVIGGLGLYAATHSLYNVEGGHRAIMFNRIVGVKDKVYPEGTHLMIPWFERPVIYDV 80 (288)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~V~~g~~gVv~~~~G~~~~~~~~pG~~~~~P~~~~v~~~~~ 80 (288)
|++++-+.++.|+..++++.+.+++++++.+..+..|++.|+.||++++|+|+||+.++++..|.||.+||+++.+.||+
T Consensus 1 ~~~~~~~~~~~pg~~~~~~~l~~~~~~G~~~y~v~~sl~nVdgGHRAI~fnRi~Gik~~iy~EGtHf~iPwfe~pIiYDv 80 (290)
T KOG3090|consen 1 MLMKLGKVPNIPGPRGAGAGLKLLLIGGLGAYGVTQSLYNVDGGHRAIVFNRIGGIKDDIYPEGTHFRIPWFERPIIYDV 80 (290)
T ss_pred CchhccCCCCCCCcchHHHHHHHHHHhchhhheecceeEeecCCceEEEEeccccchhccccCCceEeeeccccceeeee
Confidence 78888888888888888888889999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeeeeeeccccCCccEEEEEEEEEEecCCCCHHHHHHHhCccccccccchHHHHHHHHHHhhCCHhHHhhhHHHHHHH
Q 023059 81 RARPNLVESTTGSHDLQMVKIGLRVLTRPVADQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSRE 160 (288)
Q Consensus 81 ~~~~~~~~~~~~TkD~~~v~v~~~v~y~v~~~~~~~~~~~~g~~~~~~~l~~~v~~~lr~~i~~~~~~ei~~~R~~i~~~ 160 (288)
|.+++.+.+...|+|-+.|++...|.-|.+.+..+.+|+++|.||.+++|-+++.+.++.++++|+.++++++|+..+..
T Consensus 81 RarP~~i~S~tGskDLQmVnI~lRVLsRP~~~~Lp~iyrtLG~~y~ERVLPSIinEvLKaVVAqfNASqLITQRe~VSrl 160 (290)
T KOG3090|consen 81 RARPRLISSPTGSKDLQMVNIGLRVLSRPMADQLPEIYRTLGQNYDERVLPSIINEVLKAVVAQFNASQLITQREQVSRL 160 (290)
T ss_pred ccCcccccCCCCCcceeEEEeeeEEecCCChhhhHHHHHHhccCcchhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCeEEEEEEeecccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhh
Q 023059 161 IRKILTERAAYFNIALDDVSITSLTFGKEFTFAIEAKQVAAQEAERAKFIVEKAEQDKKGAIIRAQGEATSAQLIGQAIA 240 (288)
Q Consensus 161 v~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~aie~~~~a~q~ae~a~~~~~~A~ae~~a~~~~A~~ea~a~~~~~~al~ 240 (288)
+++.|.++..++.|-++||.|+++.|.+++..++|+||+|+||++||++-++.|+++++.++++|+|||++++++++|++
T Consensus 161 iRk~L~eRA~~Fni~LDDVSiT~l~F~~efTaAiEaKQvA~QeAqRA~F~VekA~qek~~~ivrAqGEaksAqliGeAi~ 240 (290)
T KOG3090|consen 161 IRKILTERAADFNIALDDVSITELTFGKEFTAAIEAKQVAAQEAQRAKFIVEKAEQEKQSAIVRAQGEAKSAQLIGEAIK 240 (290)
T ss_pred HHHHHHHHHhccceEeecceeeeeecCHHHHHHHHHHHHHHHHHhhhhhhhHHHHHhhhhhhhhhccchHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCchhhHHHHHHHHHHHHHHhcCCCCEEEEcCCcccccccccccCC
Q 023059 241 KNPAFITLRKIEAAREIAQTISKSSNKVYLNADDLLLNLQEMKLDN 286 (288)
Q Consensus 241 ~~p~~~~~~~le~~~~i~~~l~~~~~~i~l~~~~~~~~~~~~~~~~ 286 (288)
++|.++.+|.+|+-++||+.+++++|.+|+++++.+||+..+.|++
T Consensus 241 nn~~fi~Lrki~aAr~IA~tia~S~NkvyL~~~~LlLn~q~~~~~~ 286 (290)
T KOG3090|consen 241 NNPAFITLRKIEAAREIAQTIASSANKVYLSSDDLLLNLQDMDLDD 286 (290)
T ss_pred CCccceeehhHHHHHHHHHHHhcCCCeEEecccceeeeehhhcccc
Confidence 9999999999999999999999999999999999999999999986
No 2
>PRK11029 FtsH protease regulator HflC; Provisional
Probab=100.00 E-value=7.9e-46 Score=331.51 Aligned_cols=251 Identities=22% Similarity=0.348 Sum_probs=216.2
Q ss_pred HHHHHHHHHhhccEEEecCCeEEEEEeeeccccce------eeCCcceeecccccceEEEeeeeeeeeeee-ccccCCcc
Q 023059 25 VIGGLGLYAATHSLYNVEGGHRAIMFNRIVGVKDK------VYPEGTHLMIPWFERPVIYDVRARPNLVES-TTGSHDLQ 97 (288)
Q Consensus 25 v~~~~~~~~~~~~~~~V~~g~~gVv~~~~G~~~~~------~~~pG~~~~~P~~~~v~~~~~~~~~~~~~~-~~~TkD~~ 97 (288)
++++++++++++|+++|++||+||++ +||++.+. +++||+||++||+++++++|+|.+.++.+. ++.|+|+.
T Consensus 7 ~~~~~~~~~l~~s~~iV~ege~gVV~-rFGk~~~~~~~~~~~l~PGLhf~iPfid~V~~vdvR~q~~d~~~~~vlT~D~~ 85 (334)
T PRK11029 7 AIIIIVLVVLYMSVFVVKEGERGIVL-RFGKVLRDDDNKPLVYAPGLHFKIPFIETVKMLDARIQTMDNQADRFVTKEKK 85 (334)
T ss_pred HHHHHHHHHHHheEEEECCCeEEEEE-ECCceeccccccccccCCceEEEcCCceEEEEEeeEEEEeeCCCceEEcCCCC
Confidence 33444556778899999999999999 99997653 589999999999999999999999999874 69999999
Q ss_pred EEEEEEEEEEecCCCCHHHHHHHhC-ccc--cccccchHHHHHHHHHHhhCCHhHHhh-hHHHHHHHHHHHHHHH-----
Q 023059 98 MVKIGLRVLTRPVADQLPTIYRTLG-ENY--NERVLPSIIHETLKAVVAQYNASQLIT-QRETVSREIRKILTER----- 168 (288)
Q Consensus 98 ~v~v~~~v~y~v~~~~~~~~~~~~g-~~~--~~~~l~~~v~~~lr~~i~~~~~~ei~~-~R~~i~~~v~~~l~~~----- 168 (288)
++.+|+++.|+ +.++..+|.+++ .++ ....|.+.+++++|+++|+++++|+++ +|++|..++++.+++.
T Consensus 86 ~V~VD~~V~yr--I~Dp~~~~~~~~~~n~~~a~~~l~~~v~salR~viG~~tldei~~~~R~~i~~~v~~~l~~~~~~~~ 163 (334)
T PRK11029 86 DLIVDSYIKWR--ISDFSRYYLATGGGDISQAEVLLKRKFSDRLRSEIGRLDVKDIVTDSRGRLTLDVRDALNSGSAGTE 163 (334)
T ss_pred EEEEEEEEEEE--ECCHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHcccCHHHHHHhhHHHHHHHHHHHHHHhhhccc
Confidence 99999999999 578888877664 222 346688999999999999999999997 7999999999999854
Q ss_pred ----------------------------------HhcCCeEEEEEEeecccCCHHHHHHHHHHHHHHHHHHH----H---
Q 023059 169 ----------------------------------AAYFNIALDDVSITSLTFGKEFTFAIEAKQVAAQEAER----A--- 207 (288)
Q Consensus 169 ----------------------------------l~~~Gi~v~~v~I~~i~~p~~~~~aie~~~~a~q~ae~----a--- 207 (288)
+.+|||+|.+|.|++++||+++.+++++++.|+++++. +
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GI~V~~V~i~~i~~P~~v~~ai~~~~~Aere~~a~~~~aege 243 (334)
T PRK11029 164 DEVATPAADDAIASAAERVEAETKGKVPVINPNSMAALGIEVVDVRIKQINLPTEVSDAIYNRMRAEREAVARRHRSQGQ 243 (334)
T ss_pred ccccccccccccccchhhcccccccccccccccccccCCcEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999988876541 1
Q ss_pred ------------HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCchhhHH-HHHHHHHHHHHHhcCCCCEEEEcCCc
Q 023059 208 ------------KFIVEKAEQDKKGAIIRAQGEATSAQLIGQAIAKNPAFITL-RKIEAAREIAQTISKSSNKVYLNADD 274 (288)
Q Consensus 208 ------------~~~~~~A~ae~~a~~~~A~~ea~a~~~~~~al~~~p~~~~~-~~le~~~~i~~~l~~~~~~i~l~~~~ 274 (288)
+.....|++++++++++|+|||+|.++++++|.++|+++++ ++||+++++. +++++++++|+++
T Consensus 244 ~~a~~~~a~A~~e~~~~~AeA~~~a~i~~aegeA~a~~~~~~a~~~~p~~~~~~~~lea~~~~~---~~~~~~~vl~~~~ 320 (334)
T PRK11029 244 EEAEKLRATADYEVTRTLAEAERQGRIMRGEGDAEAAKLFADAFSQDPDFYAFIRSLRAYENSF---SGNQDVMVLSPDS 320 (334)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh---cCCCcEEEECCCh
Confidence 12344588899999999999999999999999999999996 9999999854 3556789999999
Q ss_pred ccccccc
Q 023059 275 LLLNLQE 281 (288)
Q Consensus 275 ~~~~~~~ 281 (288)
++|++..
T Consensus 321 ~~~~~l~ 327 (334)
T PRK11029 321 DFFRYMK 327 (334)
T ss_pred HHHHHhh
Confidence 9988775
No 3
>TIGR01932 hflC HflC protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH protease appears to be negative (PubMed:8947034, PubMed:96367)
Probab=100.00 E-value=2.6e-45 Score=329.10 Aligned_cols=250 Identities=19% Similarity=0.324 Sum_probs=212.9
Q ss_pred HHHHHHHHHhhccEEEecCCeEEEEEeeeccccce------eeCCcceeecccccceEEEeeeeeeeeeee-ccccCCcc
Q 023059 25 VIGGLGLYAATHSLYNVEGGHRAIMFNRIVGVKDK------VYPEGTHLMIPWFERPVIYDVRARPNLVES-TTGSHDLQ 97 (288)
Q Consensus 25 v~~~~~~~~~~~~~~~V~~g~~gVv~~~~G~~~~~------~~~pG~~~~~P~~~~v~~~~~~~~~~~~~~-~~~TkD~~ 97 (288)
++++++++++++|+++|++||+||++ +||++.+. +++||+||++||+++++.+|++.+.++.+. ++.|+|+.
T Consensus 7 ~~~~~~~~~l~~~~~iV~~ge~gVv~-~fGk~~~~~~~~~~v~~pGlhf~~P~i~~v~~vd~r~q~~~~~~~~vlTkD~~ 85 (317)
T TIGR01932 7 VVIVLLIVVLFQPFFIIKEGERGIIT-RFGKILKDNNHHVLVYEPGLHFKIPFIEHVKIFDAKIQTMDGRPDRIPTKEKK 85 (317)
T ss_pred HHHHHHHHHHHheEEEECCCeEEEEE-ecCceeccccccccccCCCeEEEeccccEEEEeeeeEEEecCCcceeECCCCC
Confidence 33444566777899999999999998 89997543 358999999999999999999999998764 79999999
Q ss_pred EEEEEEEEEEecCCCCHHHHHHHhC---ccccccccchHHHHHHHHHHhhCCHhHHhhh-HHHH----------------
Q 023059 98 MVKIGLRVLTRPVADQLPTIYRTLG---ENYNERVLPSIIHETLKAVVAQYNASQLITQ-RETV---------------- 157 (288)
Q Consensus 98 ~v~v~~~v~y~v~~~~~~~~~~~~g---~~~~~~~l~~~v~~~lr~~i~~~~~~ei~~~-R~~i---------------- 157 (288)
++.+++++.|| ++++..+|.++| .+..+..|.+.+++++|+++|+|+++|++++ |++|
T Consensus 86 ~V~Vd~~V~yr--V~d~~~~~~~~~~~~~~~~~~~l~~~~~~~lR~vig~~tl~eil~~~r~~i~~~~~~~~~~~~~~~~ 163 (317)
T TIGR01932 86 DIIIDTYIRWR--IEDFKKYYLSTGGGTISAAEVLIKRKIDDRLRSEIGVLGLKEIVRSSNDQLDTLVSKLALNRGGKIN 163 (317)
T ss_pred EEEEEEEEEEE--ECCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHccCcHHHHHhcchHHhhhhhchhhcccccccc
Confidence 99999999999 568899998877 2345677999999999999999999999964 5555
Q ss_pred -------------HHHHHHHHHHHHhcCCeEEEEEEeecccCCHHHHHHHHHHHHHHHHHHH------------------
Q 023059 158 -------------SREIRKILTERAAYFNIALDDVSITSLTFGKEFTFAIEAKQVAAQEAER------------------ 206 (288)
Q Consensus 158 -------------~~~v~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~aie~~~~a~q~ae~------------------ 206 (288)
.+.+.+.+...+.+|||+|++|.|++++||+++.+++++++.|+++++.
T Consensus 164 ~~~~~~~~~r~~l~~~i~~~~~~~~~~~Gi~V~~V~I~~i~~p~~v~~Ai~~~~~aere~~a~~~r~ege~~a~~i~a~A 243 (317)
T TIGR01932 164 KIAMTITKGREILAREISQIANSQLKDIGIEVVDVRIKKINYSDELSESIYNRMRSEREQIARMHRSQGEEKAEEILGKA 243 (317)
T ss_pred ccccccchhhhhHHHHHHHHHHHHHhcCCcEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888999999999999999999999999999888887764311
Q ss_pred -HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCchhhHH-HHHHHHHHHHHHhcCCCCEEEEcCCccccccc
Q 023059 207 -AKFIVEKAEQDKKGAIIRAQGEATSAQLIGQAIAKNPAFITL-RKIEAAREIAQTISKSSNKVYLNADDLLLNLQ 280 (288)
Q Consensus 207 -a~~~~~~A~ae~~a~~~~A~~ea~a~~~~~~al~~~p~~~~~-~~le~~~~i~~~l~~~~~~i~l~~~~~~~~~~ 280 (288)
++.....|+|++++++++|+|||+++++++++|+++|+++++ ++||+++++. +++++++++++||+||++.
T Consensus 244 ~~e~~~~~aeA~a~a~~~~Aegea~a~~~~~~a~~~~p~~~~~~~~le~~~~~~---~~~~~~~vl~~~~~~~~~~ 316 (317)
T TIGR01932 244 EYEVRKILSEAYRTARIIKGEGDAEAAKIYSDAYGKDPEFYSFWRSLEAYEKSF---KDNQDEKVLSTDSEFFQYM 316 (317)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHh---CCCCCEEEECCCcHHHHhh
Confidence 123345677888899999999999999999999999999995 9999999964 3667789999999999865
No 4
>cd03401 Band_7_prohibitin Band_7_prohibitin. A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup group includes proteins similar to prohibitin (a lipid raft-associated integral membrane protein). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. These microdomains in addition to being stable scaffolds may also be also dynamic units with their own regulatory functions. Prohibitin is a mitochondrial inner-membrane protein which may act as a chaperone for the stabilization of mitochondrial proteins. Human prohibitin forms a heter-oligomeric complex with Bap-37 (prohibitin 2, a band 7 domain carrying homologue). This complex may protect non-assembled membrane proteins against proteolysis by the m-AAA protease. Prohibitin and Bap-37 yeast homologues have been implicated in yeast longevity and, in the maintenance of mitochondrial morphology.
Probab=100.00 E-value=7.9e-42 Score=287.82 Aligned_cols=195 Identities=69% Similarity=1.002 Sum_probs=184.9
Q ss_pred cEEEecCCeEEEEEeeeccccc-eeeCCcceeecccccceEEEeeeeeeeeeeeccccCCccEEEEEEEEEEecCCCCHH
Q 023059 37 SLYNVEGGHRAIMFNRIVGVKD-KVYPEGTHLMIPWFERPVIYDVRARPNLVESTTGSHDLQMVKIGLRVLTRPVADQLP 115 (288)
Q Consensus 37 ~~~~V~~g~~gVv~~~~G~~~~-~~~~pG~~~~~P~~~~v~~~~~~~~~~~~~~~~~TkD~~~v~v~~~v~y~v~~~~~~ 115 (288)
|+++|++|++||++ +||+... .+++||+||++||+++++.+|++.+.+++...+.|+|++.+++++.+.|+++++++.
T Consensus 1 ~~~~V~~g~~gVv~-~~g~~~~~~~~~pG~h~~~P~~~~v~~~~~r~~~~~~~~~~~t~d~~~V~v~~~v~y~v~~~~~~ 79 (196)
T cd03401 1 SLYNVDGGHRAVLF-NRGGGVKDLVYGEGLHFRIPWFQKPIIFDVRARPRNIESTTGSKDLQMVNITLRVLFRPDASQLP 79 (196)
T ss_pred CEEEECCCcEEEEE-EecCccccCccCCceEEEccccceeEEEEeeeeEEEEeecccCCCCeEEEEEEEEEEEeCHHHHH
Confidence 68999999999999 7887543 489999999999999999999999999888889999999999999999999888999
Q ss_pred HHHHHhCccccccccchHHHHHHHHHHhhCCHhHHhhhHHHHHHHHHHHHHHHHhcCCeEEEEEEeecccCCHHHHHHHH
Q 023059 116 TIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAAYFNIALDDVSITSLTFGKEFTFAIE 195 (288)
Q Consensus 116 ~~~~~~g~~~~~~~l~~~v~~~lr~~i~~~~~~ei~~~R~~i~~~v~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~aie 195 (288)
.+|.++|.++.+..|.+.+++.+|+++++|+++|++++|++|++.+++.+++.+++|||.|+++.|++|+||+++.++|+
T Consensus 80 ~~~~~~~~~~~~~~i~~~v~~~lR~vi~~~~~~ei~~~R~~i~~~i~~~l~~~l~~~Gi~i~~v~i~~i~~p~~~~~ai~ 159 (196)
T cd03401 80 RIYQNLGEDYDERVLPSIINEVLKAVVAQFTAEELITQREEVSALIREALTERAKDFGIILDDVSITHLTFSKEFTKAVE 159 (196)
T ss_pred HHHHHhCcchHhhhhcHHHHHHHHHHHccCCHHHHHhhHHHHHHHHHHHHHHHHHhCCeEEEEEEEEeccCCHHHHHHHH
Confidence 99999987777778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 023059 196 AKQVAAQEAERAKFIVEKAEQDKKGAIIRAQGEATSA 232 (288)
Q Consensus 196 ~~~~a~q~ae~a~~~~~~A~ae~~a~~~~A~~ea~a~ 232 (288)
+++.|+|++++++.++..|++|+++++++|+|||+|+
T Consensus 160 ~k~~a~q~~~~a~~~~~~a~~ea~~~~~~A~gea~a~ 196 (196)
T cd03401 160 AKQVAQQEAERAKFVVEKAEQEKQAAVIRAEGEAEAA 196 (196)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcC
Confidence 9999999999999999999999999999999999873
No 5
>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfC (High frequency of lysogenization C). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another band 7 family member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=100.00 E-value=3.9e-41 Score=292.63 Aligned_cols=216 Identities=24% Similarity=0.348 Sum_probs=192.9
Q ss_pred EEEecCCeEEEEEeeeccccceeeCCcceeecccccceEEEeeeeeeeeee-eccccCCccEEEEEEEEEEecCCCCHHH
Q 023059 38 LYNVEGGHRAIMFNRIVGVKDKVYPEGTHLMIPWFERPVIYDVRARPNLVE-STTGSHDLQMVKIGLRVLTRPVADQLPT 116 (288)
Q Consensus 38 ~~~V~~g~~gVv~~~~G~~~~~~~~pG~~~~~P~~~~v~~~~~~~~~~~~~-~~~~TkD~~~v~v~~~v~y~v~~~~~~~ 116 (288)
+++|++||+||++ +||++.+.+++||+||++||+++++.+|++.+.++.+ .++.|+|+.++++++++.||| .++..
T Consensus 1 ~~iV~~ge~~Vv~-~~Gk~~~~~~~pG~~~~~P~i~~v~~v~~r~~~~~~~~~~v~T~D~~~v~v~~~v~yrI--~d~~~ 77 (242)
T cd03405 1 LFIVDEGEQAVVL-RFGEVVRVVTEPGLHFKLPFIQQVKKFDKRILTLDSDPQRVLTKDKKRLIVDAYAKWRI--TDPLR 77 (242)
T ss_pred CEEeCCCeEEEEE-EcCccccccCCCCeeEEcCCcceEEEEcCEEEeccCCcceEEccCCcEEEEEEEEEEEE--cCHHH
Confidence 5899999999999 8999876689999999999999999999999988875 479999999999999999995 67889
Q ss_pred HHHHhCc--cccccccchHHHHHHHHHHhhCCHhHHhhh-HHHHHHHHHHHHHHHHhcCCeEEEEEEeecccCCHHHHHH
Q 023059 117 IYRTLGE--NYNERVLPSIIHETLKAVVAQYNASQLITQ-RETVSREIRKILTERAAYFNIALDDVSITSLTFGKEFTFA 193 (288)
Q Consensus 117 ~~~~~g~--~~~~~~l~~~v~~~lr~~i~~~~~~ei~~~-R~~i~~~v~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~a 193 (288)
+|.+++. +..+..|.+.+++.+|+++++++++|++++ |++|++.+++.+++.+++|||+|++|.|++|+||+++.++
T Consensus 78 ~~~~~~~~~~~~~~~i~~~~~~~lr~vi~~~~~~el~~~~R~~i~~~i~~~l~~~l~~~Gi~i~~v~i~~i~~p~~i~~a 157 (242)
T cd03405 78 FYQAVGGEERAAETRLDQIVNSALRAEFGKRTLIELVSGERGELMEEIRRAVAEEAKELGIEVVDVRIKRIDLPEEVSES 157 (242)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHHHccCCHHHHHHhHHHHHHHHHHHHHHHHHHccCcEEEEEEEEeccCCHHHHHH
Confidence 9988873 233467899999999999999999999987 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCchhhHH-HHHHH
Q 023059 194 IEAKQVAAQEAERA-------------------KFIVEKAEQDKKGAIIRAQGEATSAQLIGQAIAKNPAFITL-RKIEA 253 (288)
Q Consensus 194 ie~~~~a~q~ae~a-------------------~~~~~~A~ae~~a~~~~A~~ea~a~~~~~~al~~~p~~~~~-~~le~ 253 (288)
|++++.++++...+ +..+..|++++++.+++|+|||+|+++++++++++|+++.+ ++||+
T Consensus 158 i~~~~~ae~~~~a~~~~ae~~~~a~~~~aea~~~~~~~~Aea~a~a~~~~a~gea~a~~~~~~a~~~~p~~~~~~~~l~~ 237 (242)
T cd03405 158 VYRRMRAERERIAAEFRAEGEEEAERIRADADRERTVILAEAYREAQEIRGEGDAEAARIYAEAYGKDPEFYAFYRSLEA 237 (242)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 98877766543211 24567899999999999999999999999999999999995 99999
Q ss_pred HHH
Q 023059 254 ARE 256 (288)
Q Consensus 254 ~~~ 256 (288)
++.
T Consensus 238 ~~~ 240 (242)
T cd03405 238 YRN 240 (242)
T ss_pred HHh
Confidence 875
No 6
>KOG3083 consensus Prohibitin [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.7e-42 Score=278.65 Aligned_cols=258 Identities=56% Similarity=0.870 Sum_probs=242.6
Q ss_pred HHHHHHHHHHHHhhccEEEecCCeEEEEEeeeccccceeeCCcceeecccccceEEEeeeeeeeeeeeccccCCccEEEE
Q 023059 22 KVGVIGGLGLYAATHSLYNVEGGHRAIMFNRIVGVKDKVYPEGTHLMIPWFERPVIYDVRARPNLVESTTGSHDLQMVKI 101 (288)
Q Consensus 22 ~~~v~~~~~~~~~~~~~~~V~~g~~gVv~~~~G~~~~~~~~pG~~~~~P~~~~v~~~~~~~~~~~~~~~~~TkD~~~v~v 101 (288)
.+++.+.++.-++.+++|.|+.||++|+++||.|+.+.+.+.|.||.+||.++.+.||.+.++..++....|||-++|++
T Consensus 11 k~gl~l~v~~~~~~s~ly~vdgg~ravifdrf~gv~~~vvgegthflipw~qk~~i~d~rs~p~~v~~itGskdLQ~Vni 90 (271)
T KOG3083|consen 11 KFGLALAVAGGVVNSALYNVDGGHRAVIFDRFRGVQDQVVGEGTHFLIPWVQKPIIFDCRSRPRNVPVITGSKDLQNVNI 90 (271)
T ss_pred ccchhhHHhhhhhhhhhcccCCCceeEEeecccchhhhcccCCceeeeeeccCcEEEeccCCCcccccccCchhhhcccc
Confidence 34455556667788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEecCCCCHHHHHHHhCccccccccchHHHHHHHHHHhhCCHhHHhhhHHHHHHHHHHHHHHHHhcCCeEEEEEEe
Q 023059 102 GLRVLTRPVADQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAAYFNIALDDVSI 181 (288)
Q Consensus 102 ~~~v~y~v~~~~~~~~~~~~g~~~~~~~l~~~v~~~lr~~i~~~~~~ei~~~R~~i~~~v~~~l~~~l~~~Gi~v~~v~I 181 (288)
...+.|+..++..+.+|.++|.||.+++|-.+-...++.++++|+..|++++|+-+++.+++.+.++...+|+.+++|.|
T Consensus 91 Tlril~rp~~sqLP~If~~~G~dyDErVLpsI~~eiLKsVVa~FdA~eliTqRe~vS~~v~~~lt~rA~~Fgl~Lddvsi 170 (271)
T KOG3083|consen 91 TLRILFRPVVSQLPCIFTSIGEDYDERVLPSITTEILKSVVARFDAGELITQRELVSRQVSNDLTERAATFGLILDDVSI 170 (271)
T ss_pred eEEEEecccccccchHHHhhcccccccccccchHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHHhhCeeechhhh
Confidence 99999998889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhc-CchhhHHHHHHHHHHHHHH
Q 023059 182 TSLTFGKEFTFAIEAKQVAAQEAERAKFIVEKAEQDKKGAIIRAQGEATSAQLIGQAIAK-NPAFITLRKIEAAREIAQT 260 (288)
Q Consensus 182 ~~i~~p~~~~~aie~~~~a~q~ae~a~~~~~~A~ae~~a~~~~A~~ea~a~~~~~~al~~-~p~~~~~~~le~~~~i~~~ 260 (288)
+++.|.+++.+++|+||+|+||+||+++.++.|++++++.+|.||||++|+++++.++.. ..-+++++.+|+-++++..
T Consensus 171 ThltfGkEFt~AvE~KQVAQQEAErarFvVeKAeQqk~aavIsAEGds~aA~li~~sla~aG~gLielrrlEAa~dia~~ 250 (271)
T KOG3083|consen 171 THLTFGKEFTEAVEAKQVAQQEAERARFVVEKAEQQKKAAVISAEGDSKAAELIANSLATAGDGLIELRRLEAAEDIAYQ 250 (271)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeecccchHHHHHHHHHHhhcCCceeeehhhhhHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999965 4568889999999999999
Q ss_pred hcCCCCEEEEcCCc-ccccc
Q 023059 261 ISKSSNKVYLNADD-LLLNL 279 (288)
Q Consensus 261 l~~~~~~i~l~~~~-~~~~~ 279 (288)
|+++.|+.|+|++. .++++
T Consensus 251 Ls~s~nv~YLp~g~s~l~~l 270 (271)
T KOG3083|consen 251 LSRSRNVTYLPAGQSMLLQL 270 (271)
T ss_pred HhcCCCceeccCCcceeccC
Confidence 99999999999874 55554
No 7
>TIGR01933 hflK HflK protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (PubMed:8947034,PubMed:96367)
Probab=100.00 E-value=4.3e-40 Score=289.02 Aligned_cols=234 Identities=18% Similarity=0.221 Sum_probs=199.8
Q ss_pred EEEecCCeEEEEEeeeccccceeeCCcceeecccccceEEEeeeeee-eeeeeccccCCccEEEEEEEEEEecCCCCHHH
Q 023059 38 LYNVEGGHRAIMFNRIVGVKDKVYPEGTHLMIPWFERPVIYDVRARP-NLVESTTGSHDLQMVKIGLRVLTRPVADQLPT 116 (288)
Q Consensus 38 ~~~V~~g~~gVv~~~~G~~~~~~~~pG~~~~~P~~~~v~~~~~~~~~-~~~~~~~~TkD~~~v~v~~~v~y~v~~~~~~~ 116 (288)
+++|++||+||++ +||++. ++++||+||++||+++++.+|++.+. +.-+..+.|+|+..+.+++++.||| .++..
T Consensus 1 ~~iV~~ge~~Vv~-~fGk~~-~~l~pGl~~~~P~i~~v~~~~~~~~~~~~~~~~v~T~D~~~v~vd~~v~yrI--~d~~~ 76 (261)
T TIGR01933 1 IYTIGEAERGVVL-RFGKYH-RTVDPGLNWKPPFIEEVYPVNVTAVRNLRKQGLMLTGDENIVNVEMNVQYRI--TDPYK 76 (261)
T ss_pred CEEeCCCeEEEEE-EcCccc-cccCCcceEECCCceEEEEeeeEEEEecCCcCeEEeCCCCEEEEEEEEEEEE--CCHHH
Confidence 5799999999999 899865 68999999999999999999997644 2222358899999999999999995 56776
Q ss_pred HHHHhCccccccccchHHHHHHHHHHhhCCHhHHhh-hHHHHHHHHHHHHHHHHhcC--CeEEEEEEeecccCCHHHHHH
Q 023059 117 IYRTLGENYNERVLPSIIHETLKAVVAQYNASQLIT-QRETVSREIRKILTERAAYF--NIALDDVSITSLTFGKEFTFA 193 (288)
Q Consensus 117 ~~~~~g~~~~~~~l~~~v~~~lr~~i~~~~~~ei~~-~R~~i~~~v~~~l~~~l~~~--Gi~v~~v~I~~i~~p~~~~~a 193 (288)
++.+. +..+..|.+.+++++|+++++++++++++ +|++|++.+.+.+++.++.| ||+|++|.|++++||+++.++
T Consensus 77 ~~~~~--~~~~~~l~~~~~s~lR~vig~~~l~eil~~~R~~i~~~i~~~l~~~~~~~~~GI~V~~v~I~~i~~p~~v~~a 154 (261)
T TIGR01933 77 YLFSV--ENPEDSLRQATDSALRGVIGDSTMDDILTEGRSQIREDTKERLNEIIDNYDLGITVTDVNFQSARPPEEVKEA 154 (261)
T ss_pred HHHhC--CCHHHHHHHHHHHHHHHHHhhCcHHHHHHhCHHHHHHHHHHHHHHHHhhhcCCcEEEEEEEEecCCCHHHHHH
Confidence 65533 44556799999999999999999999998 89999999999999999865 999999999999999999999
Q ss_pred HHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCchhhHH-HHHHH
Q 023059 194 IEAKQVAAQEAERA-------------------KFIVEKAEQDKKGAIIRAQGEATSAQLIGQAIAKNPAFITL-RKIEA 253 (288)
Q Consensus 194 ie~~~~a~q~ae~a-------------------~~~~~~A~ae~~a~~~~A~~ea~a~~~~~~al~~~p~~~~~-~~le~ 253 (288)
+++++.|+|+++++ +..+..|++++++++++|+|||++.+++++||.++|+++.+ +++|+
T Consensus 155 ~~~~~~a~q~~~~~~~~ae~~~~~~~~~a~~~a~~~~~~Aea~~~~~~~~a~g~a~~~~~~~~ay~~~p~~~~~~~~le~ 234 (261)
T TIGR01933 155 FDDVIIAREDEERYINEAEAYANEVVPKARGDAQRIIEEARGYKERRINRAKGDVARFTKLLAEYKKAPDVTRERLYLET 234 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence 99888887654331 12356788888999999999999999999999999999986 89999
Q ss_pred HHHHHHHhcCCCCEEEEcCCccccccc
Q 023059 254 AREIAQTISKSSNKVYLNADDLLLNLQ 280 (288)
Q Consensus 254 ~~~i~~~l~~~~~~i~l~~~~~~~~~~ 280 (288)
++++. ++.++++++++++++|++.
T Consensus 235 ~~~~~---~~~~~~~~~~~~~~~~~~~ 258 (261)
T TIGR01933 235 MEKVL---SNTRKVLLDDKKGNNLLYL 258 (261)
T ss_pred HHHHH---ccCCeEEEECCCCCeeeee
Confidence 99864 4666789999998876653
No 8
>PRK10930 FtsH protease regulator HflK; Provisional
Probab=100.00 E-value=3.5e-39 Score=296.12 Aligned_cols=239 Identities=19% Similarity=0.280 Sum_probs=199.0
Q ss_pred HHHHHHHHHHhhccEEEecCCeEEEEEeeeccccceeeCCcceeecccccceEEEeeeeeeeee-eeccccCCccEEEEE
Q 023059 24 GVIGGLGLYAATHSLYNVEGGHRAIMFNRIVGVKDKVYPEGTHLMIPWFERPVIYDVRARPNLV-ESTTGSHDLQMVKIG 102 (288)
Q Consensus 24 ~v~~~~~~~~~~~~~~~V~~g~~gVv~~~~G~~~~~~~~pG~~~~~P~~~~v~~~~~~~~~~~~-~~~~~TkD~~~v~v~ 102 (288)
+++++++++|+++|+++|++||+|||+ +||++. .+++||+||++||+++++.+|++.+.... +..++|+|+..|.++
T Consensus 83 ii~~~~v~i~l~sg~yiV~e~E~gVV~-rFGk~~-~~l~PGLhfk~PfId~V~~vdv~~~~~~~~~~~mLT~D~n~V~Vd 160 (419)
T PRK10930 83 IAAAAVVIIWAASGFYTIKEAERGVVT-RFGKFS-HLVEPGLNWKPTFIDEVKPVNVEAVRELAASGVMLTSDENVVRVE 160 (419)
T ss_pred HHHHHHHHHHHHheEEEECCCeEEEEE-ECCcCc-ceeCCceEEecCceEEEEEEEeEEEEEccCcceeECCCCCEEEEE
Confidence 344455667888999999999999999 999975 68999999999999999999998765332 346899999999999
Q ss_pred EEEEEecCCCCHHHHHHHhCccccccccchHHHHHHHHHHhhCCHhHHhh-hHHHHHHHHHHHHHHHHhcC--CeEEEEE
Q 023059 103 LRVLTRPVADQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLIT-QRETVSREIRKILTERAAYF--NIALDDV 179 (288)
Q Consensus 103 ~~v~y~v~~~~~~~~~~~~g~~~~~~~l~~~v~~~lr~~i~~~~~~ei~~-~R~~i~~~v~~~l~~~l~~~--Gi~v~~v 179 (288)
++|+|| +.++..++.++ ...+..|++.+++++|+++++++++++++ .|++|..++++.+++.+++| ||+|.+|
T Consensus 161 ~~VqYr--I~Dp~~~lf~v--~~~~~~L~~~~~SAlR~vIG~~tldevLt~~R~~I~~~i~~~l~e~l~~y~~GI~V~~V 236 (419)
T PRK10930 161 MNVQYR--VTDPEKYLFSV--TSPDDSLRQATDSALRGVIGKYTMDRILTEGRTVIRSDTQRELEETIRPYDMGITLLDV 236 (419)
T ss_pred EEEEEE--ECCHHHHHHhc--cCHHHHHHHHHHHHHHHHHccCCHHHHhhccHHHHHHHHHHHHHHHHhhcCCCeEEEEE
Confidence 999999 57788776654 34456799999999999999999999997 59999999999999999986 9999999
Q ss_pred EeecccCCHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHhhhhhHHH-HHHHHHHh
Q 023059 180 SITSLTFGKEFTFAIEAKQVAAQEAER-------------------AKFIVEKAEQDKKGAIIRAQGEATS-AQLIGQAI 239 (288)
Q Consensus 180 ~I~~i~~p~~~~~aie~~~~a~q~ae~-------------------a~~~~~~A~ae~~a~~~~A~~ea~a-~~~~~~al 239 (288)
+|++++||+++.+++++.+.|+++.++ ++..+..|+|++++.+++|+|||++ .++++ +|
T Consensus 237 ~I~di~pP~eV~~Af~~v~~Are~~~~~i~eAeayan~iip~A~gea~~ii~~AeAyr~~~i~~AeGda~rF~~i~~-~Y 315 (419)
T PRK10930 237 NFQAARPPEEVKAAFDDAIAARENEQQYIREAEAYTNEVQPRANGQAQRILEEARAYKAQTILEAQGEVARFAKLLP-EY 315 (419)
T ss_pred EEeecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH-HH
Confidence 999999999999999877766653221 1234667899999999999999977 56665 89
Q ss_pred hcCchhhHH-HHHHHHHHHHHHhcCCCCEEEEcCC
Q 023059 240 AKNPAFITL-RKIEAAREIAQTISKSSNKVYLNAD 273 (288)
Q Consensus 240 ~~~p~~~~~-~~le~~~~i~~~l~~~~~~i~l~~~ 273 (288)
.++|++.+. .|||+++++ |++ .++++++.+
T Consensus 316 ~kaP~vtr~RlYletme~v---l~~-~~kvivd~~ 346 (419)
T PRK10930 316 KAAPEITRERLYIETMEKV---LGH-TRKVLVNDK 346 (419)
T ss_pred hhCHHHHHHHHHHHHHHHH---Hcc-CCEEEEeCC
Confidence 999999996 699999985 434 455677664
No 9
>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=100.00 E-value=4.4e-38 Score=276.06 Aligned_cols=225 Identities=19% Similarity=0.251 Sum_probs=192.6
Q ss_pred CCeEEEEEeeeccccceeeCCcceeecccccceE-EEeeeeeeeeeeeccccCCccEEEEEEEEEEecCCCCHHHHHHHh
Q 023059 43 GGHRAIMFNRIVGVKDKVYPEGTHLMIPWFERPV-IYDVRARPNLVESTTGSHDLQMVKIGLRVLTRPVADQLPTIYRTL 121 (288)
Q Consensus 43 ~g~~gVv~~~~G~~~~~~~~pG~~~~~P~~~~v~-~~~~~~~~~~~~~~~~TkD~~~v~v~~~v~y~v~~~~~~~~~~~~ 121 (288)
+|++||++ +||++. ++++||+||++||++++. .+|++.+.++++.++.|+||.++.+|+++.|||.+.++..++.++
T Consensus 1 q~~~~Vv~-rfGk~~-~~l~pGlhf~~P~i~~v~~~~~~r~~~~~~~~~~lTkD~~~V~vd~~v~yrI~d~~~~~~~~~~ 78 (262)
T cd03407 1 QSQVAIIE-RFGKFF-KVAWPGCHFVIPLVETVAGRLSLRVQQLDVRVETKTKDNVFVTVVGQIQYRVSEENATDAFYKL 78 (262)
T ss_pred CcEEEEEe-ecCccc-ccCCCCeEEEeccccceeeEEeeeEEEecCCCceEcCCCCEEEEEEEEEEEECCcHHHHHHHHc
Confidence 58999999 999865 689999999999999984 899999999998889999999999999999998666655777766
Q ss_pred CccccccccchHHHHHHHHHHhhCCHhHHhhhHHHHHHHHHHHHHHHHhcCCeEEEEEEeecccCCHHHHHHHHHHHHHH
Q 023059 122 GENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAAYFNIALDDVSITSLTFGKEFTFAIEAKQVAA 201 (288)
Q Consensus 122 g~~~~~~~l~~~v~~~lr~~i~~~~~~ei~~~R~~i~~~v~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~aie~~~~a~ 201 (288)
+ +. ...|.+.+++++|+++|+++++|++++|++|++.+.+.+++.+++|||.|++|.|++++||+++.++|++++.|+
T Consensus 79 ~-~~-~~~l~~~~~s~lR~vig~~~l~eil~~R~~I~~~i~~~l~~~l~~~GI~V~~v~I~~i~~p~~v~~A~~~~~~A~ 156 (262)
T cd03407 79 G-NP-EEQIQSYVFDVLRARIPKLTLDELFEQKDEIAKAVEEELREAMSRYGFEIVATLITDIDPDAEVKRAMNEINAAQ 156 (262)
T ss_pred C-CH-HHHHHHHHHHHHHHHhcCccHHHHHhhHHHHHHHHHHHHHHHHHhcCcEEEEEEEEecCCCHHHHHHHHHHHHHH
Confidence 5 22 346899999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHH----H----HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhc-------------CchhhH----HHHHHHHHH
Q 023059 202 QEAERA----K----FIVEKAEQDKKGAIIRAQGEATSAQLIGQAIAK-------------NPAFIT----LRKIEAARE 256 (288)
Q Consensus 202 q~ae~a----~----~~~~~A~ae~~a~~~~A~~ea~a~~~~~~al~~-------------~p~~~~----~~~le~~~~ 256 (288)
++.+++ + ..+..|++++++.+++|+|+|++.++.++++.. .|+..+ .+++|++++
T Consensus 157 ~~~~a~~~~Aea~~~~~i~~A~~ea~a~~~~Aeg~a~a~~~~A~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~e~~~~ 236 (262)
T cd03407 157 RQRVAAVHKAEAEKIKDIKAAEADAEAKRLQGVGAAEQRQAIADGLRESILSLADAVPGMTAKDVMDLLLVNQYFDTLKA 236 (262)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHH
Confidence 765533 1 457789999999999999999999988877421 233333 479999999
Q ss_pred HHHHhcCCCCEEEEcCCc
Q 023059 257 IAQTISKSSNKVYLNADD 274 (288)
Q Consensus 257 i~~~l~~~~~~i~l~~~~ 274 (288)
++. ++++++++|.+.
T Consensus 237 ~~~---~~~kviv~p~~~ 251 (262)
T cd03407 237 YGR---SSSTVVFRPHGP 251 (262)
T ss_pred HHh---CCCCEEEecCCC
Confidence 875 555888998763
No 10
>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=100.00 E-value=5.3e-38 Score=276.56 Aligned_cols=227 Identities=21% Similarity=0.242 Sum_probs=185.4
Q ss_pred HHHHHHHHHhhccEEEecCCeEEEEEeeeccccceeeCCcceeecccccceEEE-eeeee----------eee--e-eec
Q 023059 25 VIGGLGLYAATHSLYNVEGGHRAIMFNRIVGVKDKVYPEGTHLMIPWFERPVIY-DVRAR----------PNL--V-EST 90 (288)
Q Consensus 25 v~~~~~~~~~~~~~~~V~~g~~gVv~~~~G~~~~~~~~pG~~~~~P~~~~v~~~-~~~~~----------~~~--~-~~~ 90 (288)
++++++++++++|+++|++||+||++ +||++. .+++||+||++||++++..+ |++.+ ... . +..
T Consensus 2 ~~~~~~~~~~~~s~~~V~~ge~gVV~-~fGk~~-~~~~pGlh~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (266)
T cd03404 2 IAALLVILWLLSGFYIVQPGERGVVL-RFGKYS-RTVEPGLHWKLPYPIEVVEVVPVFQLRSVGIPVRVGSVRSVPGESL 79 (266)
T ss_pred hHHHHHHHHHHcEEEEECCCceEEeE-EcCccc-cccCCceeEecCCCcEEEEEecceeEEeeccccccccccCCCcccc
Confidence 34555667778899999999999998 899976 78999999999999887544 34221 111 1 235
Q ss_pred cccCCccEEEEEEEEEEecCCCCHHHHHHHhCccccccccchHHHHHHHHHHhhCCHhHHhhh-HHHHHHHHHHHHHHHH
Q 023059 91 TGSHDLQMVKIGLRVLTRPVADQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQ-RETVSREIRKILTERA 169 (288)
Q Consensus 91 ~~TkD~~~v~v~~~v~y~v~~~~~~~~~~~~g~~~~~~~l~~~v~~~lr~~i~~~~~~ei~~~-R~~i~~~v~~~l~~~l 169 (288)
+.|+||.++.+++++.|+| .++..++.+. +..+..|.+.+++++|+++|+++++|++++ |+++.+.+++.+++.+
T Consensus 80 v~T~D~~~v~vd~~v~yrI--~d~~~~~~~~--~~~~~~l~~~~~~~lr~~i~~~~~~eil~~~R~~i~~~i~~~l~~~~ 155 (266)
T cd03404 80 MLTGDENIVDVEFAVQYRI--SDPYDYLFNV--RDPEGTLRQAAESAMREVVGRSTLDDVLTEGREEIAQDVRELLQAIL 155 (266)
T ss_pred eEeCCCCEEEEEEEEEEEE--CCHHHHHhhC--CCHHHHHHHHHHHHHHHHHhhCcHHHHHHhCHHHHHHHHHHHHHHHh
Confidence 8999999999999999995 5676665543 233457999999999999999999999987 9999999999999999
Q ss_pred hcC--CeEEEEEEeecccCCHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHhhhhh
Q 023059 170 AYF--NIALDDVSITSLTFGKEFTFAIEAKQVAAQEAERAK-------------------FIVEKAEQDKKGAIIRAQGE 228 (288)
Q Consensus 170 ~~~--Gi~v~~v~I~~i~~p~~~~~aie~~~~a~q~ae~a~-------------------~~~~~A~ae~~a~~~~A~~e 228 (288)
+.| |++|++|.|++++||+++.+++++++.|+|++++++ .....|+++|++.+++|+||
T Consensus 156 ~~~~~Gi~v~~v~i~~i~~p~~i~~a~~~~~~A~q~~~~~~~eae~~a~~~~~~A~~ea~~~~~~A~a~~~~~~~~ae~~ 235 (266)
T cd03404 156 DAYKAGIEIVGVNLQDADPPEEVQDAFDDVNKARQDRERLINEAEAYANEVVPKARGEAARIIQEAEAYKEEVIAEAQGE 235 (266)
T ss_pred hccCCCeEEEEEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhHHHHHHHH
Confidence 876 999999999999999999999998888877543321 34556777778888888888
Q ss_pred HHHHHHHHHHhhcCchhhH-HHHHHHHHHH
Q 023059 229 ATSAQLIGQAIAKNPAFIT-LRKIEAAREI 257 (288)
Q Consensus 229 a~a~~~~~~al~~~p~~~~-~~~le~~~~i 257 (288)
|++.++++++|+++|+++. ..+++++.++
T Consensus 236 a~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 265 (266)
T cd03404 236 AARFESLLAEYKKAPDVTRERLYLETMEEV 265 (266)
T ss_pred HHHHHHHHHHHhhChHHHHHHHHHHHHHHh
Confidence 9999999999999999765 5788888763
No 11
>cd03406 Band_7_3 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=100.00 E-value=1.4e-36 Score=265.74 Aligned_cols=199 Identities=17% Similarity=0.275 Sum_probs=175.7
Q ss_pred hhccEEEecCCeEEEEEeeeccccceeeCCcceeecccccceEEEeeeeeeeeee-eccccCCccEEEEE-EEEEEecCC
Q 023059 34 ATHSLYNVEGGHRAIMFNRIVGVKDKVYPEGTHLMIPWFERPVIYDVRARPNLVE-STTGSHDLQMVKIG-LRVLTRPVA 111 (288)
Q Consensus 34 ~~~~~~~V~~g~~gVv~~~~G~~~~~~~~pG~~~~~P~~~~v~~~~~~~~~~~~~-~~~~TkD~~~v~v~-~~v~y~v~~ 111 (288)
+++|+++|++||+||++ |||++.+.+++||+||++||++++..+|++.+..+.+ ..+.|+||..+.+| ..+.|.+++
T Consensus 1 ~~ssv~iV~ege~gVV~-RfGkv~~~~l~PGLHfkiPfId~V~~v~vrlq~~~~~~~~v~TkDg~~ItvD~i~v~~ivdp 79 (280)
T cd03406 1 LSSALHKIEEGHVGVYY-RGGALLTSTSGPGFHLMLPFITTYKSVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNFLIP 79 (280)
T ss_pred CCceEEEECCCeEEEEE-ECCcccccccCCceEEecCCceEEEEEEeEEEEeccCCcccccCCCcEEEEEEEEEEEecCH
Confidence 35789999999999999 9999877789999999999999999999999988874 57889999999999 568888888
Q ss_pred CCHHHHHHHhCccccccccchHHHHHHHHHHhhCCHhHHhh-hHHHHHHHHHHHHHHHHhcC--CeEEEEEEeecccCCH
Q 023059 112 DQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLIT-QRETVSREIRKILTERAAYF--NIALDDVSITSLTFGK 188 (288)
Q Consensus 112 ~~~~~~~~~~g~~~~~~~l~~~v~~~lr~~i~~~~~~ei~~-~R~~i~~~v~~~l~~~l~~~--Gi~v~~v~I~~i~~p~ 188 (288)
..+...+.+++.++...+|.+.+++++|+++|+++++|+++ +|+++.+.+++.+++.++.| ||+|.+|.|++++||+
T Consensus 80 ~~~~~~~~~y~~~~~~~~I~~~Vrsavr~vig~~tldeVis~~Rd~I~~~I~~~l~e~l~~y~~GI~I~dV~I~~id~P~ 159 (280)
T cd03406 80 DSVYDIVKNYTADYDKTLIFNKIHHELNQFCSVHTLQEVYIDLFDQIDENLKLALQKDLTRMAPGLEIQAVRVTKPKIPE 159 (280)
T ss_pred HHHHHHHHHHhHhhHHHHHHHHHHHHHHHHhhhCCHHHHHhccHHHHHHHHHHHHHHHHhccCCCcEEEEEEEEecCCCH
Confidence 88888887777677788999999999999999999999997 89999999999999999987 9999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 023059 189 EFTFAIEAKQVAAQEAE-----RAKFIVEKAEQDKKGAIIRAQGEATSAQL 234 (288)
Q Consensus 189 ~~~~aie~~~~a~q~ae-----~a~~~~~~A~ae~~a~~~~A~~ea~a~~~ 234 (288)
++.+++ +++.|+.+.. +.+.....||+++.+.+++|+|+|+..++
T Consensus 160 ~V~~af-erM~aER~k~~~~~~~~~~~~~~ae~~~~~~~~~a~~~~~~~~~ 209 (280)
T cd03406 160 AIRRNY-ELMEAEKTKLLIAIQKQKVVEKEAETERKKAVIEAEKVAQVAKI 209 (280)
T ss_pred HHHHHH-HHHHHHHHhhhhccchhHHHHHHhhHHHHHHHHHHHHHhhHHHH
Confidence 999999 5666655433 44566778999999999999998877555
No 12
>cd03403 Band_7_stomatin_like Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Stomatin is widely expressed and, highly expressed in red blood cells. It localizes predominantly to the plasma membrane and to intracellular vesicles of the endocytic pathway, where it is present in higher order homo-oligomeric complexes (of between 9 and 12 monomers). Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and, is implicated in trafficking of Glut1 glucose transporters. Prohibitin is a mitochondrial inner-membrane protein hypothesized to act as a chaperone for the stabilization of mitochondrial proteins. Podicin local
Probab=100.00 E-value=2.2e-36 Score=258.30 Aligned_cols=210 Identities=25% Similarity=0.387 Sum_probs=181.9
Q ss_pred ecCCeEEEEEeeeccccceeeCCcceeecccccce-EEEeeeeeeeeeee-ccccCCccEEEEEEEEEEecCCCCHHHHH
Q 023059 41 VEGGHRAIMFNRIVGVKDKVYPEGTHLMIPWFERP-VIYDVRARPNLVES-TTGSHDLQMVKIGLRVLTRPVADQLPTIY 118 (288)
Q Consensus 41 V~~g~~gVv~~~~G~~~~~~~~pG~~~~~P~~~~v-~~~~~~~~~~~~~~-~~~TkD~~~v~v~~~v~y~v~~~~~~~~~ 118 (288)
|++||+||++ +||++.+ +++||+||++||++++ +.+|++.+.++++. ++.|+|++++.+++++.||| .++..++
T Consensus 1 V~~ge~~Vv~-~~G~~~~-~~~pG~~f~~P~~~~v~~~v~~r~~~~~~~~~~v~T~D~~~v~v~~~v~yrI--~d~~~~~ 76 (215)
T cd03403 1 VPQYERGVVE-RLGKYHR-TLGPGLHFIIPFIDRIAYKVDLREQVLDVPPQEVITKDNVTVRVDAVLYYRV--VDPVKAV 76 (215)
T ss_pred CCcceEEEEE-EcCcCcc-ccCCcEEEEeccceEEEEEEeeEEEEEccCCceeEcCCCCEEEEEEEEEEEE--ecHHHHH
Confidence 7899999999 8999764 6999999999999999 99999999999865 58999999999999999995 6777666
Q ss_pred HHhCccccccccchHHHHHHHHHHhhCCHhHHhhhHHHHHHHHHHHHHHHHhcCCeEEEEEEeecccCCHHHHHHHHHHH
Q 023059 119 RTLGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAAYFNIALDDVSITSLTFGKEFTFAIEAKQ 198 (288)
Q Consensus 119 ~~~g~~~~~~~l~~~v~~~lr~~i~~~~~~ei~~~R~~i~~~v~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~aie~~~ 198 (288)
..+ .++ +..+.+.+++++|+++++++++|++++|+++++.+++.++..+++|||+|++|.|+++++|+++.+++++++
T Consensus 77 ~~~-~~~-~~~l~~~~~~~lr~~i~~~~~~el~~~R~~i~~~i~~~l~~~l~~~Gi~v~~v~i~~i~~p~~~~~ai~~~~ 154 (215)
T cd03403 77 YGV-EDY-RYAISQLAQTTLRSVIGKMELDELLSEREEINAELVEILDEATDPWGVKVERVEIKDIILPQEIQEAMAKQA 154 (215)
T ss_pred hcC-CCH-HHHHHHHHHHHHHHHHccccHHHHHhhHHHHHHHHHHHHHHHHhccCeEEEEEEEeeecCCHHHHHHHHHHH
Confidence 543 233 446899999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhh---cCchhhHHHHHHHHHHHHHHhcCCCCEEEEcCC
Q 023059 199 VAAQEAERAKFIVEKAEQDKKGAIIRAQGEATSAQLIGQAIA---KNPAFITLRKIEAAREIAQTISKSSNKVYLNAD 273 (288)
Q Consensus 199 ~a~q~ae~a~~~~~~A~ae~~a~~~~A~~ea~a~~~~~~al~---~~p~~~~~~~le~~~~i~~~l~~~~~~i~l~~~ 273 (288)
.| +.++++++++|+|+++|.++.++|.+ .+|.+++++++|+++.+++ ..+++++++++
T Consensus 155 ~A--------------~~~~~a~i~~A~ge~~a~~~~aea~~~~~~~~~~~~~~~~e~~~~~~~---~~~~~~~~~~~ 215 (215)
T cd03403 155 EA--------------EREKRAKIIEAEGERQAAILLAEAAKQAAINPAALQLRELETLEEIAK---EAASTVVFPAP 215 (215)
T ss_pred HH--------------HHHHHHHHHHhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHh---ccCCeEEeeCC
Confidence 43 45566778888888888888888864 3689999999999999987 44566666653
No 13
>COG0330 HflC Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.5e-33 Score=246.54 Aligned_cols=237 Identities=25% Similarity=0.355 Sum_probs=185.0
Q ss_pred HHHHHHHHhhccEEEecCCeEEEEEeeeccccceeeC-Ccceeeccc---c-cceEEEeeeeeeeee-ee-ccccCCccE
Q 023059 26 IGGLGLYAATHSLYNVEGGHRAIMFNRIVGVKDKVYP-EGTHLMIPW---F-ERPVIYDVRARPNLV-ES-TTGSHDLQM 98 (288)
Q Consensus 26 ~~~~~~~~~~~~~~~V~~g~~gVv~~~~G~~~~~~~~-pG~~~~~P~---~-~~v~~~~~~~~~~~~-~~-~~~TkD~~~ 98 (288)
+++++++++++++++|++++.++++ +||++. +.+. ||+||++|| + ....+++.+.+.++. +. .+.|+|+..
T Consensus 9 ~l~~~~~~~~~~~~~v~~~~~~vv~-r~G~~~-~~~~~pGl~f~iP~~~~~~~~~~~~~~~~~~~d~~~~q~viT~D~~~ 86 (291)
T COG0330 9 LLVILIVLLFSSIFVVKEGERGVVL-RFGRYT-RTLGEPGLHFKIPFPEAIEEVVVRVDLRERTLDVGPPQEVITKDNVI 86 (291)
T ss_pred HHHHHHHHHHceeEEEcCCceEEEE-Eeccee-eecCCCceEEEcCCccceeeeeeeeeeEEEEeccCCcceEEecCCCE
Confidence 5556777888999999999999999 999965 4677 999999999 3 334678888888888 44 699999999
Q ss_pred EEEEEEEEEecCCCCHHHHHHHhCccccccccchHHHHHHHHHHhhCCHhHHhhhHH-HHHHHHHHHHHHHHhcCCeEEE
Q 023059 99 VKIGLRVLTRPVADQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQRE-TVSREIRKILTERAAYFNIALD 177 (288)
Q Consensus 99 v~v~~~v~y~v~~~~~~~~~~~~g~~~~~~~l~~~v~~~lr~~i~~~~~~ei~~~R~-~i~~~v~~~l~~~l~~~Gi~v~ 177 (288)
+.+|+++.|| +.++..++.++. ..+..+.+.+++.+|++++++++++++++|+ .+...+.+.++..+++||+.|.
T Consensus 87 V~vd~~v~~r--v~d~~~~~~~v~--~~~~~l~~~~~~~lR~vig~~~~~e~~~~~~~~i~~~i~~~l~~~~~~~Gi~V~ 162 (291)
T COG0330 87 VSVDAVVQYR--VTDPQKAVYNVE--NAEAALRQLVQSALRSVIGRMTLDELLTERRAEINAKIREILDEAADPWGIKVV 162 (291)
T ss_pred EEEEEEEEEE--EcCHHHHHHhcC--CHHHHHHHHHHHHHHHHHccccHHHHhhCchHHHHHHHHHHHHHhhhhcCcEEE
Confidence 9999999999 577776666543 3666799999999999999999999999888 9999999999999999999999
Q ss_pred EEEeecccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH-------------------
Q 023059 178 DVSITSLTFGKEFTFAIEAKQVAAQEAERAKFIVEKAEQDKKGAIIRAQGEATSAQLIGQA------------------- 238 (288)
Q Consensus 178 ~v~I~~i~~p~~~~~aie~~~~a~q~ae~a~~~~~~A~ae~~a~~~~A~~ea~a~~~~~~a------------------- 238 (288)
+|.|++++||+++.+++++++.|+++.+. .+..|++++++.+++|+|+++|.+++++|
T Consensus 163 ~V~i~~i~~p~ev~~a~~~~~~Aer~~ra---~i~~Ae~~~~~~~~~a~g~~~a~~i~aea~~~a~~~~~a~~~~~~~~~ 239 (291)
T COG0330 163 DVEIKDIDPPEEVQAAMEKQMAAERDKRA---EILEAEGEAQAAILRAEGEAEAAIILAEAEAEAEVIARAEADAAKIIA 239 (291)
T ss_pred EEEEeecCCCHHHHHHHHHHHHHHHHHHH---HHHHhHhHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence 99999999999999999888777665443 34455555555555555555554444444
Q ss_pred --hhcC---chhhHHHHHHHHHHHHHHhcCCCCEEEEcCC
Q 023059 239 --IAKN---PAFITLRKIEAAREIAQTISKSSNKVYLNAD 273 (288)
Q Consensus 239 --l~~~---p~~~~~~~le~~~~i~~~l~~~~~~i~l~~~ 273 (288)
+... |.+..+|+++.+.+.+. +++++++++|.+
T Consensus 240 ~~~~~~~~~~~~~~~r~~~~~~~~~~--~~~~~~v~~p~~ 277 (291)
T COG0330 240 AALREAPAAPQALAQRYLEELLEIAL--AGNSKVVVVPNS 277 (291)
T ss_pred hhcccccchhHHHHHHHHHHHHHHhh--CCCCeEEEecCC
Confidence 3343 35666799998888654 343444444443
No 14
>KOG2621 consensus Prohibitins and stomatins of the PID superfamily [Energy production and conversion]
Probab=100.00 E-value=2.1e-34 Score=243.17 Aligned_cols=226 Identities=19% Similarity=0.300 Sum_probs=196.5
Q ss_pred HHHHhhccEEEecCCeEEEEEeeecccc-ceeeCCcceeecccccceEEEeeeeeeeeeee-ccccCCccEEEEEEEEEE
Q 023059 30 GLYAATHSLYNVEGGHRAIMFNRIVGVK-DKVYPEGTHLMIPWFERPVIYDVRARPNLVES-TTGSHDLQMVKIGLRVLT 107 (288)
Q Consensus 30 ~~~~~~~~~~~V~~g~~gVv~~~~G~~~-~~~~~pG~~~~~P~~~~v~~~~~~~~~~~~~~-~~~TkD~~~v~v~~~v~y 107 (288)
.-+-++.|+.+|++.|++|++ |+|+.. +...+||+.|++|++++.+++|+|.+.+++|. ++.|||.+.+.+|+.|+|
T Consensus 47 fP~S~~fclKiv~eYeR~VIf-RLGRl~~~~~rGPGi~fvlPCIDt~~kVDLRt~sfnVPpqeIltkDsvtvsVdAvVyy 125 (288)
T KOG2621|consen 47 FPISIWFCLKIVQEYERAVIF-RLGRLRTGGARGPGLFFLLPCIDTFRKVDLRTQSFNVPPQEILTKDSVTISVDAVVYY 125 (288)
T ss_pred hHHHHHHHHHhhHHHhhhhhe-eeeeccccCCCCCCeEEEecccceeeeeeeeEEeecCCHHHHhcccceEEEeceEEEE
Confidence 334457788999999999999 999964 35679999999999999999999999999987 699999999999999999
Q ss_pred ecCCCCHHHHHHHhCccccccccchHHHHHHHHHHhhCCHhHHhhhHHHHHHHHHHHHHHHHhcCCeEEEEEEeecccCC
Q 023059 108 RPVADQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAAYFNIALDDVSITSLTFG 187 (288)
Q Consensus 108 ~v~~~~~~~~~~~~g~~~~~~~l~~~v~~~lr~~i~~~~~~ei~~~R~~i~~~v~~~l~~~l~~~Gi~v~~v~I~~i~~p 187 (288)
| +.|+..-+.+++ | ...-.+-.+++.+|+++++.++.|++++|+.|+.+++..|++..+.||++|++|.|+||.+|
T Consensus 126 r--i~dpi~sv~~V~-D-a~~sTr~lAqttLrn~lgtk~L~eils~r~~is~~~~~~Ld~~T~~WGvkVeRVEikDvrlp 201 (288)
T KOG2621|consen 126 R--ISDPIIAVNNVG-D-ADNATRLLAQTTLRNYLGTKTLSEILSSREVIAQEAQKALDEATEPWGVKVERVEIKDVRLP 201 (288)
T ss_pred E--ecCHHHHHHhcc-C-HHHHHHHHHHHHHHHHHccCcHHHHHHhHHHHHHHHHHHhhhcccccceEEEEEEEeeeech
Confidence 9 788887777553 2 22235778999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH---hhcCchhhHHHHHHHHHHHHHHhcCC
Q 023059 188 KEFTFAIEAKQVAAQEAERAKFIVEKAEQDKKGAIIRAQGEATSAQLIGQA---IAKNPAFITLRKIEAAREIAQTISKS 264 (288)
Q Consensus 188 ~~~~~aie~~~~a~q~ae~a~~~~~~A~ae~~a~~~~A~~ea~a~~~~~~a---l~~~p~~~~~~~le~~~~i~~~l~~~ 264 (288)
.+.++++. .++| |.++++++++.||||..|.+.+++| +.++|..+++|+|+.+..++. .+
T Consensus 202 ~qlqrama------aeAe--------A~reA~Akviaaege~~as~al~~aa~v~~~sp~alqLryLqtl~sia~---e~ 264 (288)
T KOG2621|consen 202 AQLQRAMA------AEAE--------ATREARAKVIAAEGEKKASEALKEAADVISESPIALQLRYLQTLNSIAA---EK 264 (288)
T ss_pred Hhhhhhhh------chhh--------hhhhhhhhHHHHHhhhHHHHHHHHhhccccCCchhhhhhhhhcchhhhc---CC
Confidence 99998883 1222 6678889999999999999988877 578999999999999998875 67
Q ss_pred CCEEEEcCCcccc
Q 023059 265 SNKVYLNADDLLL 277 (288)
Q Consensus 265 ~~~i~l~~~~~~~ 277 (288)
++++++|-..+++
T Consensus 265 ~~tivfP~p~e~l 277 (288)
T KOG2621|consen 265 NSTIVFPLPIDLL 277 (288)
T ss_pred CCCcccCCCHHHH
Confidence 8889998665433
No 15
>cd03402 Band_7_2 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=99.98 E-value=5.6e-31 Score=224.14 Aligned_cols=161 Identities=19% Similarity=0.241 Sum_probs=142.8
Q ss_pred cEEEecCCeEEEEEeeeccccceeeCCcceeecccccceEEEeeeeeeeeeee-ccccCCccEEEEEEEEEEecCCCCHH
Q 023059 37 SLYNVEGGHRAIMFNRIVGVKDKVYPEGTHLMIPWFERPVIYDVRARPNLVES-TTGSHDLQMVKIGLRVLTRPVADQLP 115 (288)
Q Consensus 37 ~~~~V~~g~~gVv~~~~G~~~~~~~~pG~~~~~P~~~~v~~~~~~~~~~~~~~-~~~TkD~~~v~v~~~v~y~v~~~~~~ 115 (288)
|+++|+|||.||++ +||++.+.+.+||+||++||++ ..++|+|.+.++.+. .+.|+|+.++.+++.+.|| +.|+.
T Consensus 1 g~~iV~~ge~~Vv~-rfGk~~~t~~~pGL~~~~P~~~-~~~vd~R~~~~~~~~~~v~T~D~~~v~V~~~V~~r--V~Dp~ 76 (219)
T cd03402 1 GLFVVEPNQARVLV-LFGRYIGTIRRTGLRWVNPFSS-KKRVSLRVRNFESEKLKVNDANGNPIEIAAVIVWR--VVDTA 76 (219)
T ss_pred CeEEECCCeeEEEE-EcCcCcccccCCceEEEeccce-EEEEeeEEEEecCCCceeEcCCCCEEEEEEEEEEE--EcCHH
Confidence 68999999999999 9999877667999999999985 588999999988875 5999999999999999999 56777
Q ss_pred HHHHHhCccccccccchHHHHHHHHHHhhCCHhHHhh-------hHHHHHHHHHHHHHHHHhcCCeEEEEEEeecccCCH
Q 023059 116 TIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLIT-------QRETVSREIRKILTERAAYFNIALDDVSITSLTFGK 188 (288)
Q Consensus 116 ~~~~~~g~~~~~~~l~~~v~~~lr~~i~~~~~~ei~~-------~R~~i~~~v~~~l~~~l~~~Gi~v~~v~I~~i~~p~ 188 (288)
+++.+. .++ +..+.+.+++++|+++++|+++++++ +|+++.+++++.+++.++.|||+|.+++|+++.||+
T Consensus 77 ka~~~v-~~~-~~~l~~~~~salR~vig~~~~d~il~~~~~l~~~r~~I~~~l~~~l~~~l~~~GI~V~~v~I~~l~~p~ 154 (219)
T cd03402 77 KAVFNV-DDY-EEFVHIQSESALRHVASQYPYDDPVNKETSLRGNSDEVSDELARELQERLAVAGVEVVEARITHLAYAP 154 (219)
T ss_pred HHHHHc-CCH-HHHHHHHHHHHHHHHHccCcHHHHhccccccccCHHHHHHHHHHHHHHHHHhhCcEEEEEEEEeecCCH
Confidence 665544 344 55799999999999999999999985 579999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 023059 189 EFTFAIEAKQVAAQE 203 (288)
Q Consensus 189 ~~~~aie~~~~a~q~ 203 (288)
++.++|.+||.|+++
T Consensus 155 ei~~am~~R~~Ae~~ 169 (219)
T cd03402 155 EIAQAMLQRQQASAI 169 (219)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999988755443
No 16
>PF01145 Band_7: SPFH domain / Band 7 family; InterPro: IPR001107 Band 7 protein is an integral membrane protein which is thought to regulate cation conductance. A variety of proteins belong to this family. These include the prohibitins, cytoplasmic anti-proliferative proteins and stomatin, an erythrocyte membrane protein. Bacterial HflC protein also belongs to this family. Note: Band 4.1 (IPR021187 from INTERPRO) and Band 7 proteins refer to human erythrocyte membrane proteins separated by SDS polyacrylamide gels and stained with coomassie blue [].; PDB: 2RPB_A 3BK6_B 1WIN_A.
Probab=99.96 E-value=3.1e-30 Score=213.59 Aligned_cols=162 Identities=30% Similarity=0.464 Sum_probs=112.6
Q ss_pred EEecCCeEEEEEeeeccccceeeCCcceeecccccceEEEeeeeeeeeeee---ccccCCccEEEEEEEEEEecCCCCHH
Q 023059 39 YNVEGGHRAIMFNRIVGVKDKVYPEGTHLMIPWFERPVIYDVRARPNLVES---TTGSHDLQMVKIGLRVLTRPVADQLP 115 (288)
Q Consensus 39 ~~V~~g~~gVv~~~~G~~~~~~~~pG~~~~~P~~~~v~~~~~~~~~~~~~~---~~~TkD~~~v~v~~~v~y~v~~~~~~ 115 (288)
++|++||+||++ ++|++.. +++||+||++||.++++.+|++.+.+++.. .+.|+|+.++.+++++.|++ +++.
T Consensus 1 ~~V~~g~~~V~~-~~G~~~~-~~~~G~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~t~D~~~v~v~~~v~y~i--~~~~ 76 (179)
T PF01145_consen 1 YTVPPGEVGVVV-RFGKVKD-VLGPGLHFVIPFIQKVYVYPTRVQTIEFTREPITVRTKDGVPVDVDVTVTYRI--EDPP 76 (179)
T ss_dssp ---------------------------------EEE--S--SS-EEEEEEE--EEEE-TTS-EEEEEEEEEEEE--S-CC
T ss_pred CEeCCCEEEEEE-ECCeEeE-EECCCeEEEeCCcCeEEEEeCEEEecccchhhhhhhhcccceeeeeEEEEEEe--chHH
Confidence 579999999999 6898764 999999999999999999999999999987 89999999999999999995 8888
Q ss_pred HHHHHh--CccccccccchHHHHHHHHHHhhCCHhHHhhhHHHHHHHHHHHHHHHHhcCCeEEEEEEeecccCCHHHHHH
Q 023059 116 TIYRTL--GENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAAYFNIALDDVSITSLTFGKEFTFA 193 (288)
Q Consensus 116 ~~~~~~--g~~~~~~~l~~~v~~~lr~~i~~~~~~ei~~~R~~i~~~v~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~a 193 (288)
.++.++ +.+..+..|++.+++++|+++++|+++|++++|.++.+.+++.+++.++++|++|.+|.|.++++|+++.++
T Consensus 77 ~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~v~~~l~~~~~~~Gi~i~~v~i~~~~~~~~~~~~ 156 (179)
T PF01145_consen 77 KFVQNYEGGEEDPENLLRQIVESALREVISSYSLEEIYSNREEIADEVREQLQEALEEYGIEITSVQITDIDPPQEVEEA 156 (179)
T ss_dssp CCCCCCSS-HCHHHHHHHHHHHHHHHHHHHCS-HHHHHHTHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEECTTHHHH
T ss_pred HHHHhhhcchhhhhhhhhhhhhhhhheEeeeeehHHhhhhhhhhhHhHHHHHhhhccccEEEEEEEEEeecCCCHHHHHH
Confidence 888877 356677889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 023059 194 IEAKQVAAQEA 204 (288)
Q Consensus 194 ie~~~~a~q~a 204 (288)
+++++.+++++
T Consensus 157 i~~~~~a~~~~ 167 (179)
T PF01145_consen 157 IEEKQRAEQEA 167 (179)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 98887776665
No 17
>smart00244 PHB prohibitin homologues. prohibitin homologues
Probab=99.96 E-value=8.9e-29 Score=201.23 Aligned_cols=156 Identities=26% Similarity=0.391 Sum_probs=140.0
Q ss_pred ccEEEecCCeEEEEEeeeccccceeeCCcceeecccccceEEEeeeeeeeeeee-ccccCCccEEEEEEEEEEecCCCCH
Q 023059 36 HSLYNVEGGHRAIMFNRIVGVKDKVYPEGTHLMIPWFERPVIYDVRARPNLVES-TTGSHDLQMVKIGLRVLTRPVADQL 114 (288)
Q Consensus 36 ~~~~~V~~g~~gVv~~~~G~~~~~~~~pG~~~~~P~~~~v~~~~~~~~~~~~~~-~~~TkD~~~v~v~~~v~y~v~~~~~ 114 (288)
+|+++|++||+||++ +||++.+ +++||+||++||+++++.+|++.+.+..+. .+.|+|+.++.+++++.|++ .++
T Consensus 1 ~~~~~V~~g~~~v~~-~~G~~~~-~~~pG~~~~~P~~~~~~~~~~~~~~~~~~~~~~~t~d~~~v~v~~~v~~rv--~d~ 76 (160)
T smart00244 1 AAIKVVGEGEAGVVE-RLGRVLR-VLGPGLHFLIPFIDRVKKVDLRAQTDDVPPQEIITKDNVKVSVDAVVYYRV--LDP 76 (160)
T ss_pred CcEEEEcccEEEEEE-ecCcccc-ccCCCEEEEecceeEEEEEeeEEEeecCCceEEEecCCcEEEEeEEEEEEE--ccH
Confidence 589999999999999 8999775 899999999999999999999999988865 68999999999999999994 555
Q ss_pred HHHHHHh-CccccccccchHHHHHHHHHHhhCCHhHHhh-hHHHHHHHHHHHHHHHHhcCCeEEEEEEeecccCCHHHHH
Q 023059 115 PTIYRTL-GENYNERVLPSIIHETLKAVVAQYNASQLIT-QRETVSREIRKILTERAAYFNIALDDVSITSLTFGKEFTF 192 (288)
Q Consensus 115 ~~~~~~~-g~~~~~~~l~~~v~~~lr~~i~~~~~~ei~~-~R~~i~~~v~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~ 192 (288)
..++.+. +.+. ..+.+.+++++|+++++++++|+++ +|+++++.+++.+++.++++|++|.++.|+++++|+++++
T Consensus 77 ~~~~~~~~~~~~--~~l~~~i~~~ir~~i~~~~~~~i~~~~r~~i~~~v~~~l~~~~~~~Gi~i~~v~i~~i~~p~~i~~ 154 (160)
T smart00244 77 LKAVYRVLDADY--AVIEQLAQTTLRSVIGKMTLDELLTDEREKISENIREELNERAEAWGIEVEDVEIKDIRLPEEIQE 154 (160)
T ss_pred HHHhhhcCCHHH--HHHHHHHHHHHHHHHccccHHHHHHhhHHHHHHHHHHHHHHHHHhCCCEEEEEEEEecCCCHHHHH
Confidence 5554443 3322 4789999999999999999999999 7999999999999999999999999999999999999999
Q ss_pred HHHHH
Q 023059 193 AIEAK 197 (288)
Q Consensus 193 aie~~ 197 (288)
++++|
T Consensus 155 ai~~k 159 (160)
T smart00244 155 AMEQQ 159 (160)
T ss_pred HHHhh
Confidence 99866
No 18
>KOG2620 consensus Prohibitins and stomatins of the PID superfamily [Energy production and conversion]
Probab=99.95 E-value=8.4e-28 Score=200.91 Aligned_cols=189 Identities=15% Similarity=0.209 Sum_probs=144.0
Q ss_pred ccEEE--ecCCeEEEEEeeeccccceeeCCcceeecccccceEE-Eeeeeeeeee-eeccccCCccEEEEEEEEEEecCC
Q 023059 36 HSLYN--VEGGHRAIMFNRIVGVKDKVYPEGTHLMIPWFERPVI-YDVRARPNLV-ESTTGSHDLQMVKIGLRVLTRPVA 111 (288)
Q Consensus 36 ~~~~~--V~~g~~gVv~~~~G~~~~~~~~pG~~~~~P~~~~v~~-~~~~~~~~~~-~~~~~TkD~~~v~v~~~v~y~v~~ 111 (288)
.|+.+ ||+.+++|+. |||+. .++++||+||..|+++++.. .+++...... ..+..|+||+.+.++.+++||+ .
T Consensus 5 ~n~vi~~VpQ~~a~VvE-R~GkF-~~iLePG~~fl~p~~d~i~~v~~lkeia~~~~~q~aiTkDNV~v~idgvly~rv-~ 81 (301)
T KOG2620|consen 5 TNTVIRFVPQQEAAVVE-RFGKF-HRILEPGLHFLPPVIDKIAYVHSLKEIAILDPKQEAITKDNVFVQIDGVLYYRV-V 81 (301)
T ss_pred ceeeEEeechhHhHHHH-Hhhhh-hhhcCCcceechhhhhhHHHHHHHHHHhhcccccceeecccEEEEEEEEEEEEE-e
Confidence 34444 9999999998 99995 47999999999999988753 3344333433 3478999999999999999997 2
Q ss_pred CCHHHHHHHhCccccccccchHHHHHHHHHHhhCCHhHHhhhHHHHHHHHHHHHHHHHhcCCeEEEEEEeecccCCHHHH
Q 023059 112 DQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAAYFNIALDDVSITSLTFGKEFT 191 (288)
Q Consensus 112 ~~~~~~~~~~g~~~~~~~l~~~v~~~lr~~i~~~~~~ei~~~R~~i~~~v~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~ 191 (288)
++... =..||.+..+..+..++++.+|..+++++++.++.+|++++..+.+++++.++.||+++....|+||.||+.+.
T Consensus 82 dp~~~-dAsYgvenp~~aI~qlaqttmRsevgkltLD~vFeer~~ln~sI~eainkA~~~wG~~clr~eIrDI~pp~~V~ 160 (301)
T KOG2620|consen 82 DPYAD-DASYGVENPEYAIQQLAQTTMRSEVGKLTLDKVFEERNSLNKSIVEAINKAMEAWGYECLRYEIRDIEPPPSVK 160 (301)
T ss_pred ccccc-ccccccCCHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhcCCCHHHH
Confidence 22221 12235444445589999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 023059 192 FAIEAKQVAAQEAERAKFIVEKAEQDKKGAIIRAQGEATS 231 (288)
Q Consensus 192 ~aie~~~~a~q~ae~a~~~~~~A~ae~~a~~~~A~~ea~a 231 (288)
++|+....|+ ...+ ..+..+|++|++.+.+|+|++++
T Consensus 161 ~AM~~q~~Ae-R~kr--AailesEger~~~InrAEGek~s 197 (301)
T KOG2620|consen 161 RAMNMQNEAE-RMKR--AAILESEGERIAQINRAEGEKES 197 (301)
T ss_pred HHHHHHHHHH-HHHH--HHHhhhhhhhHHhhhhhcchhhh
Confidence 9996443332 2222 23445555555555555555443
No 19
>KOG2962 consensus Prohibitin-related membrane protease subunits [General function prediction only]
Probab=99.93 E-value=6.8e-24 Score=174.37 Aligned_cols=234 Identities=18% Similarity=0.312 Sum_probs=178.8
Q ss_pred HHHHhhccEEEecCCeEEEEEeeeccccceeeCCcceeecccccceEEEeeeeeeeeeee-ccccCCccEEEEE-EEEEE
Q 023059 30 GLYAATHSLYNVEGGHRAIMFNRIVGVKDKVYPEGTHLMIPWFERPVIYDVRARPNLVES-TTGSHDLQMVKIG-LRVLT 107 (288)
Q Consensus 30 ~~~~~~~~~~~V~~g~~gVv~~~~G~~~~~~~~pG~~~~~P~~~~v~~~~~~~~~~~~~~-~~~TkD~~~v~v~-~~v~y 107 (288)
++.+++++.+.|++||+||.+ |-|.....+.+||+|+.+||+.++..+.++.|+-+... .|.|+.|+.+.+| +-|.-
T Consensus 15 ~~~~~~s~vHkieEGHvgvYy-RGGALL~~~t~PG~Hl~lPFiTt~ksVQvTLQTDev~nvPCGTsGGVlIyfdrIEVVN 93 (322)
T KOG2962|consen 15 LVAFLSSAVHKIEEGHVGVYY-RGGALLTSITGPGFHLMLPFITTYKSVQVTLQTDEVKNVPCGTSGGVLIYFDRIEVVN 93 (322)
T ss_pred HHHHHHHHHhhcccCceEEEE-ecceeeeccCCCCcEEEeeeeeceeeeEEEeeccccccCCCCCCCcEEEEEehhhhhh
Confidence 445567888999999999999 75556777899999999999999999999999887754 7999999999887 44444
Q ss_pred ecCCCCHHHHHHHhCccccccccchHHHHHHHHHHhhCCHhHHhh-hHHHHHHHHHHHHHHHHhc--CCeEEEEEEeecc
Q 023059 108 RPVADQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLIT-QRETVSREIRKILTERAAY--FNIALDDVSITSL 184 (288)
Q Consensus 108 ~v~~~~~~~~~~~~g~~~~~~~l~~~v~~~lr~~i~~~~~~ei~~-~R~~i~~~v~~~l~~~l~~--~Gi~v~~v~I~~i 184 (288)
.+.++.+.++..+|+.||...++-+.+...+.+.+|.+++.|++- --++|.++++.+|+..+.. -|++|..|+++..
T Consensus 94 ~L~~d~Vydiv~NYtvdYD~~lIfnKiHHE~NQFCS~HtLQeVYIdlFDqIDE~lK~ALQ~Dl~~mAPGl~iqaVRVTKP 173 (322)
T KOG2962|consen 94 FLRPDAVYDIVKNYTVDYDKTLIFNKIHHELNQFCSVHTLQEVYIDLFDQIDENLKDALQADLTRMAPGLEIQAVRVTKP 173 (322)
T ss_pred hhchhHHHHHHHHcccCCcchhhhhHHHHHHHhHhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHhhCCCcEEEEEEecCC
Confidence 566888899999999999999999999999999999999999994 6799999999999999864 4999999999999
Q ss_pred cCCHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhhhhhHHHH---------------------------
Q 023059 185 TFGKEFTFAIEAKQVAAQ-----EAERAKFIVEKAEQDKKGAIIRAQGEATSA--------------------------- 232 (288)
Q Consensus 185 ~~p~~~~~aie~~~~a~q-----~ae~a~~~~~~A~ae~~a~~~~A~~ea~a~--------------------------- 232 (288)
..|+.+++..|.. .++. .+++++...+.||.+|...+++|+..|+.+
T Consensus 174 kIPEaiRrN~E~M-E~EkTKlLiA~ekQkVvEKeAETerkkAviEAEK~AqVa~I~~qqkl~EKetekr~~eiE~~~~La 252 (322)
T KOG2962|consen 174 KIPEAIRRNFELM-EAEKTKLLIAAEKQKVVEKEAETERKKAVIEAEKNAQVAKILMQQKLMEKETEKRISEIEDAAFLA 252 (322)
T ss_pred CChHHHHHhHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHhHh
Confidence 9999999888532 2221 222333333344444444444444333332
Q ss_pred -----------HHHHHH----hhcCchhhHHHHHHHHHHHHHHhcCCCCEEEEcCC
Q 023059 233 -----------QLIGQA----IAKNPAFITLRKIEAAREIAQTISKSSNKVYLNAD 273 (288)
Q Consensus 233 -----------~~~~~a----l~~~p~~~~~~~le~~~~i~~~l~~~~~~i~l~~~ 273 (288)
+...+| +.-+|++++++.+++.-. |++||++.+
T Consensus 253 rekskADAe~Y~a~k~AeaNKlkLTpEyLeLkk~~AIAs--------NsKIyfGd~ 300 (322)
T KOG2962|consen 253 REKSKADAEYYRALKEAEANKLKLTPEYLELKKIDAIAS--------NSKIYFGDK 300 (322)
T ss_pred hhhhhccHHHHHHHHHHhhccccCCHHHHHHHHHHHHHh--------cCeeeeccc
Confidence 222222 345899999888875533 788998765
No 20
>cd03400 Band_7_1 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=99.86 E-value=3.2e-21 Score=150.52 Aligned_cols=121 Identities=20% Similarity=0.299 Sum_probs=113.8
Q ss_pred EEeeeeeeeeeeeccccCCccEEEEEEEEEEecCCCCHHHHHHHhCccccccccchHHHHHHHHHHhhCCHhHHhh-hHH
Q 023059 77 IYDVRARPNLVESTTGSHDLQMVKIGLRVLTRPVADQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLIT-QRE 155 (288)
Q Consensus 77 ~~~~~~~~~~~~~~~~TkD~~~v~v~~~v~y~v~~~~~~~~~~~~g~~~~~~~l~~~v~~~lr~~i~~~~~~ei~~-~R~ 155 (288)
.||++.++.+.+..+.|+||.++.+++++.|+|++.++..+|.++|.++.+..|.+.+++++|+++++|+++|+++ +|+
T Consensus 2 ~~~~r~~~~~~~~~v~T~D~~~v~vd~~v~y~V~~~~~~~~~~~~~~~~~~~~i~~~~~~~lR~~~~~~~~~e~i~~~R~ 81 (124)
T cd03400 2 EYSTRLQEVDEKIDVLSKEGLSINADVSVQYRINPNKAAAVHSKLGTDYARKIVRPTFRSLVREVTGRYTAEQIYSTKRK 81 (124)
T ss_pred cccceeeecccceEEECCCCCEEEEEEEEEEEEChhhHHHHHHHhCcchhheeechhHHHHHHHHhcCCCHHHHhhhhHH
Confidence 3678888888888999999999999999999998888888999998777788899999999999999999999996 899
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEEEeecccCCHHHHHHHHHH
Q 023059 156 TVSREIRKILTERAAYFNIALDDVSITSLTFGKEFTFAIEAK 197 (288)
Q Consensus 156 ~i~~~v~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~aie~~ 197 (288)
+|.+.+++.++..+++||++|.+|+|++++||+++.++|++|
T Consensus 82 ~i~~~i~~~l~~~~~~~Gi~v~~v~i~~i~~P~~v~~aI~~k 123 (124)
T cd03400 82 EIESAIKKELIEEFVGDGLILEEVLLRNIKLPDQIADAIEAK 123 (124)
T ss_pred HHHHHHHHHHHHHhccCCeEEEEEEEecccCCHHHHHHHHhc
Confidence 999999999999999999999999999999999999999876
No 21
>cd03408 Band_7_5 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=99.86 E-value=8.3e-21 Score=161.08 Aligned_cols=161 Identities=17% Similarity=0.219 Sum_probs=134.5
Q ss_pred HhhccEEEecCCeEEEEEeeeccccceeeCCcceeec----cccc---------------ceEEEeeeeeeeee------
Q 023059 33 AATHSLYNVEGGHRAIMFNRIVGVKDKVYPEGTHLMI----PWFE---------------RPVIYDVRARPNLV------ 87 (288)
Q Consensus 33 ~~~~~~~~V~~g~~gVv~~~~G~~~~~~~~pG~~~~~----P~~~---------------~v~~~~~~~~~~~~------ 87 (288)
+..+|.++|++||.||++ ++|++.+ ++.||.|+.+ |++. .++.++.+.+....
T Consensus 11 i~~~s~~iV~e~~~av~~-~~Gk~~~-~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 88 (207)
T cd03408 11 IKNGSQLIVREGQAAVFV-NEGKVAD-VFAPGGYYLTTNNLPVLAFLLSGDKGFSSPFKGEVYFFNTRVFTDLLWGTPAP 88 (207)
T ss_pred cccCCEEEEcCCcEEEEE-ECCEEEE-EecCCcceeeecCccHHHHhcChhhhCcCCceeEEEEEECEEEeccccCCCCC
Confidence 346789999999999999 8999764 6777777554 4432 36778888765422
Q ss_pred -eeccccCCccEEEEEEEEEEecCCCCHHHHHHHhCcc-------ccccccchHHHHHHHHHHhhCCHhHHhhh--HHHH
Q 023059 88 -ESTTGSHDLQMVKIGLRVLTRPVADQLPTIYRTLGEN-------YNERVLPSIIHETLKAVVAQYNASQLITQ--RETV 157 (288)
Q Consensus 88 -~~~~~TkD~~~v~v~~~v~y~v~~~~~~~~~~~~g~~-------~~~~~l~~~v~~~lr~~i~~~~~~ei~~~--R~~i 157 (288)
.....|+|++++.+++++.|+ +.|+..++.+++.. ..+..+.+.+++++|++++++++++++.+ |++|
T Consensus 89 ~~~~~~~~~~v~v~v~~~~~~k--I~Dp~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~lr~~i~~~~~~~l~~~~~r~~i 166 (207)
T cd03408 89 VFGRDSEFGGVPLRAFGTYSLK--VTDPVLFVTNIVGTRGLFTVEDLEKSLRALIVAALSSALSESGLAVMLLAANRDEL 166 (207)
T ss_pred eeeeCCccceEEEEeeEEEEEE--EcCHHHHHHHhcCCCcceeHHHHHHHHHHHHHHHHHHHHHhcCCeeEEhhhhHHHH
Confidence 224568899999999999999 68999999988521 24557899999999999999999999987 9999
Q ss_pred HHHHHHHHHHHHhcCCeEEEEEEeecccCCHHHHHHHHHH
Q 023059 158 SREIRKILTERAAYFNIALDDVSITSLTFGKEFTFAIEAK 197 (288)
Q Consensus 158 ~~~v~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~aie~~ 197 (288)
++.+++.+++.+++||++|.+|.|++|++|+++++++.++
T Consensus 167 ~~~v~~~l~~~~~~~Gi~i~~v~I~~i~~p~e~~~ai~~r 206 (207)
T cd03408 167 SKAVREALAPWFASFGLELVSVYIESISYPDEVQKLIDKR 206 (207)
T ss_pred HHHHHHHHHHHHHhcCcEEEEEEEEeecCCHHHHHHHHhh
Confidence 9999999999999999999999999999999999998654
No 22
>COG2268 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.81 E-value=2.2e-18 Score=160.42 Aligned_cols=180 Identities=16% Similarity=0.196 Sum_probs=139.7
Q ss_pred HHHHHHHHHHHHHhhccEEE-ecCCeEEEEEeee-c-----cccceeeCCcceeecccccceEEEeeeeeeeeee-eccc
Q 023059 21 IKVGVIGGLGLYAATHSLYN-VEGGHRAIMFNRI-V-----GVKDKVYPEGTHLMIPWFERPVIYDVRARPNLVE-STTG 92 (288)
Q Consensus 21 ~~~~v~~~~~~~~~~~~~~~-V~~g~~gVv~~~~-G-----~~~~~~~~pG~~~~~P~~~~v~~~~~~~~~~~~~-~~~~ 92 (288)
++++++++++++|+...+|+ .++++.-|+.++| | |....++.+|+||++|++|...++|++....++. ..+.
T Consensus 17 vvv~i~~ilv~if~~~~~y~~a~~~~aLI~~g~~~g~~~~~g~~~~vV~gGg~~v~Pi~q~~~r~~l~~i~l~v~~~~v~ 96 (548)
T COG2268 17 VVVVILVILVLIFFGKRFYIIARPNEALIRTGSKLGSKDEAGGGQKVVRGGGAIVMPIFQTIERMSLTTIKLEVEIDNVY 96 (548)
T ss_pred HHHHHHHHHHHHHHhheeEEecCCCceEEEeccccCCcccccCCccEEecCceEEecceeeeEEeeeeeeeeeeeeeeeE
Confidence 33334444444444446665 4555544444222 0 3455789999999999999999999999999987 4799
Q ss_pred cCCccEEEEEEEEEEec--CCCCHHHHHHHhCcc----ccccccchHHHHHHHHHHhhCCHhHHhhhHHHHHHHHHHHHH
Q 023059 93 SHDLQMVKIGLRVLTRP--VADQLPTIYRTLGEN----YNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILT 166 (288)
Q Consensus 93 TkD~~~v~v~~~v~y~v--~~~~~~~~~~~~g~~----~~~~~l~~~v~~~lr~~i~~~~~~ei~~~R~~i~~~v~~~l~ 166 (288)
|+||.|+++++..+.++ +..+...+..++|.. .....+...+.+.+|.+++++++.+++++|..|.+.+...+.
T Consensus 97 t~Dg~p~~v~~~a~v~i~~~~~dI~~aae~~g~Kg~~~~l~~~~~~~l~~~lR~i~a~~t~~el~edR~~F~~~V~~~v~ 176 (548)
T COG2268 97 TKDGMPLNVEAVAYVKIGDTFQDIATAAERFGGKGSREDLEQLAEDTLEGALRAVLAQMTVEELNEDRLGFAQVVQEVVG 176 (548)
T ss_pred ecCCCccceeEEEEEEecCCHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHHhcCHHHHhhHHhhHHHHHHHHHH
Confidence 99999999998888776 233444566666633 455667888999999999999999999999999999999999
Q ss_pred HHHhcCCeEEEEEEeecccCC-------HHHHHHHHHHHHH
Q 023059 167 ERAAYFNIALDDVSITSLTFG-------KEFTFAIEAKQVA 200 (288)
Q Consensus 167 ~~l~~~Gi~v~~v~I~~i~~p-------~~~~~aie~~~~a 200 (288)
..|++.|+.|+++.|.|+..+ ..|.++.-.++++
T Consensus 177 ~dL~k~Gl~l~s~~I~~i~d~~~~~~d~~~yLda~G~r~i~ 217 (548)
T COG2268 177 DDLSKMGLVLDSLAINDINDTSKENQDPNNYLDALGRRRIA 217 (548)
T ss_pred HHHHhcCeeeeeeeecccccccccccChhhhhhhcChHHHH
Confidence 999999999999999999998 8899998666544
No 23
>cd03399 Band_7_flotillin Band_7_flotillin: a subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. These two proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and, interact with a variety of proteins. Flotillins may play a role in the progression of prion disease, in the pathogenesis of neurodegenerative diseases such as Parkinson's and Alzheimer's disease and, in cancer invasion and metastasis.
Probab=99.72 E-value=3.3e-17 Score=128.55 Aligned_cols=116 Identities=13% Similarity=0.178 Sum_probs=100.8
Q ss_pred Eeeeeeeeeeee-ccccCCccEEEEEEEEEEecCCCCHHH----HHHHhC---ccccccccchHHHHHHHHHHhhCCHhH
Q 023059 78 YDVRARPNLVES-TTGSHDLQMVKIGLRVLTRPVADQLPT----IYRTLG---ENYNERVLPSIIHETLKAVVAQYNASQ 149 (288)
Q Consensus 78 ~~~~~~~~~~~~-~~~TkD~~~v~v~~~v~y~v~~~~~~~----~~~~~g---~~~~~~~l~~~v~~~lr~~i~~~~~~e 149 (288)
+|++.+.++++. .+.|+|++++.+++++.||| .++.. ++.+++ .+..+..+.+.+++++|+++|+|+++|
T Consensus 2 ~~lr~~~~~~~~q~v~TkD~~~v~vd~~~~~rV--~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lR~~ig~~tl~e 79 (128)
T cd03399 2 LSLTSMVLRVGSEAVITRDGVRVDVTAVFQVKV--GGTEEAIATAAERFLGKSEEEIEELVKEVLEGHLRAVVGTMTVEE 79 (128)
T ss_pred ccccceeeeccccceecCCCcEEEEEEEEEEEe--CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 467888888876 68999999999999999996 44443 344443 245677889999999999999999999
Q ss_pred HhhhHHHHHHHHHHHHHHHHhcCCeEEEEEEeecccCCHHHHHHHH
Q 023059 150 LITQRETVSREIRKILTERAAYFNIALDDVSITSLTFGKEFTFAIE 195 (288)
Q Consensus 150 i~~~R~~i~~~v~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~aie 195 (288)
++++|++|.+++.+.++..+++||++|.++.|++|++|+++.+++-
T Consensus 80 l~~~R~~i~~~i~~~v~~~~~~~Gi~i~~v~I~~i~~~~~~~~~~~ 125 (128)
T cd03399 80 IYEDRDKFAEQVQEVVAPDLNKMGLELDSFTIKDITDTDGYLNNLG 125 (128)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHCCCEEEEEeeEEecCCCCCHHHcC
Confidence 9999999999999999999999999999999999999999888763
No 24
>KOG2668 consensus Flotillins [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.69 E-value=7e-16 Score=134.26 Aligned_cols=160 Identities=12% Similarity=0.169 Sum_probs=133.3
Q ss_pred EEEecCCeEEEEEeeeccccceeeCCcceeecccccceEEEeeeeeeeeeeec-cccCCccEEEEEEEEEEecCCCCHHH
Q 023059 38 LYNVEGGHRAIMFNRIVGVKDKVYPEGTHLMIPWFERPVIYDVRARPNLVEST-TGSHDLQMVKIGLRVLTRPVADQLPT 116 (288)
Q Consensus 38 ~~~V~~g~~gVv~~~~G~~~~~~~~pG~~~~~P~~~~v~~~~~~~~~~~~~~~-~~TkD~~~v~v~~~v~y~v~~~~~~~ 116 (288)
|+...+.+..++.+ ||+.+..+-+| .|++|| +++.++|+.+.++++..+ +.|+.|+|+.+....+.++..+++..
T Consensus 2 f~~~~~~~~l~itg--~g~~~~~lv~~-~wvf~w-q~~q~~~ln~mtl~~~~e~v~tsegvP~~vtgVaqvki~~~~~~e 77 (428)
T KOG2668|consen 2 FKVAGASQYLAITG--GGIEDIKLVKK-SWVFPW-QQCTVFDVSPMTLTFKVENVMTSEGVPFVVTGVAQVKIRVDDADE 77 (428)
T ss_pred CccCCccceEEeec--ccccCceeccc-ceeeee-eeeeEEeecceeeeeecchhhcccCCceEeeeeEEEeeccCCHHH
Confidence 56677888877762 55555556666 477789 999999999999999886 99999999999999999988898765
Q ss_pred HHHH-----hC--ccccccccchHHHHHHHHHHhhCCHhHHhhhHHHHHHHHHHHHHHHHhcCCeEEEEEEeecccCCH-
Q 023059 117 IYRT-----LG--ENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAAYFNIALDDVSITSLTFGK- 188 (288)
Q Consensus 117 ~~~~-----~g--~~~~~~~l~~~v~~~lr~~i~~~~~~ei~~~R~~i~~~v~~~l~~~l~~~Gi~v~~v~I~~i~~p~- 188 (288)
+... +| .+....++...+.+..|.++++|+++|+|.+|.+|...+++..+.++..+||.|.++.|+|+...+
T Consensus 78 lL~~A~e~flgK~~~eIn~~vl~tlEGh~Rai~asmTvEEIyKdrk~F~k~Vfeva~~dl~~mGi~I~s~tiKdl~D~~g 157 (428)
T KOG2668|consen 78 LLLYACEQFLGKSSNEINELVLGTLEGHTRAILASMTVEEIYKDRKEFKKEVFEVAQLDLGQMGIVIYSATIKDLVDVPG 157 (428)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhhhHHHHHHHhccHHHHHhhHHHHHHHHHHHhhhhhhhcceEEEEeEhhhhhcccc
Confidence 5332 13 334455677889999999999999999999999999999999999999999999999999998777
Q ss_pred -HHHHHHHHHHHHH
Q 023059 189 -EFTFAIEAKQVAA 201 (288)
Q Consensus 189 -~~~~aie~~~~a~ 201 (288)
+|..++-.++.++
T Consensus 158 ~~YlssLGka~tae 171 (428)
T KOG2668|consen 158 HEYLSSLGKATTAE 171 (428)
T ss_pred hHHHHHhhhHHHHH
Confidence 7999997666554
No 25
>cd02106 Band_7 The band 7 domain of flotillin (reggie) like proteins. This group contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic HflK/C plays a role i
Probab=99.58 E-value=2.5e-14 Score=110.05 Aligned_cols=106 Identities=20% Similarity=0.282 Sum_probs=93.2
Q ss_pred eccccCCccEEEEEEEEEEecCCCCHHHHHHHh-CccccccccchHHHHHHHHHHhhCCHhHHhhhHHHHHHHHHHHHHH
Q 023059 89 STTGSHDLQMVKIGLRVLTRPVADQLPTIYRTL-GENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTE 167 (288)
Q Consensus 89 ~~~~TkD~~~v~v~~~v~y~v~~~~~~~~~~~~-g~~~~~~~l~~~v~~~lr~~i~~~~~~ei~~~R~~i~~~v~~~l~~ 167 (288)
..+.|+|+.++++++++.|++ .++..++.++ +.+. ...+.+.+.+++|.++++++++++.++|++|++.+++.+..
T Consensus 14 ~~~~t~d~~~i~~~~~~~~~v--~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~i~~~v~~~l~~ 90 (121)
T cd02106 14 QEVLTKDNVPVRVDAVVQYRV--VDPVKALYNVRDPED-EEALRQLAQSALRSVIGKMTLDELLEDRDEIAAEVREALQE 90 (121)
T ss_pred ceEEecCCCEEEEEEEEEEEE--eCHHHHHHhcCCccH-HHHHHHHHHHHHHHHHccccHHHHHhhHHHHHHHHHHHHHH
Confidence 368999999999999999996 4454444443 3333 56799999999999999999999999999999999999999
Q ss_pred HHhcCCeEEEEEEeecccCCHHHHHHHHHH
Q 023059 168 RAAYFNIALDDVSITSLTFGKEFTFAIEAK 197 (288)
Q Consensus 168 ~l~~~Gi~v~~v~I~~i~~p~~~~~aie~~ 197 (288)
.+++||++|.+|.|.++++|+++.++++++
T Consensus 91 ~~~~~Gi~i~~v~i~~i~~~~~~~~ai~~~ 120 (121)
T cd02106 91 DLDKYGIEVVDVRIKDIDPPEEVQEAMEDR 120 (121)
T ss_pred HHHhcCCEEEEEEEEecCCCHHHHHHHHhh
Confidence 999999999999999999999999999765
No 26
>PF13421 Band_7_1: SPFH domain-Band 7 family
Probab=99.58 E-value=9.7e-14 Score=117.41 Aligned_cols=162 Identities=16% Similarity=0.136 Sum_probs=128.5
Q ss_pred hhccEEEecCCeEEEEEeeeccccceeeCCccee-------------------ecccccceEEEeeeeee-eee----ee
Q 023059 34 ATHSLYNVEGGHRAIMFNRIVGVKDKVYPEGTHL-------------------MIPWFERPVIYDVRARP-NLV----ES 89 (288)
Q Consensus 34 ~~~~~~~V~~g~~gVv~~~~G~~~~~~~~pG~~~-------------------~~P~~~~v~~~~~~~~~-~~~----~~ 89 (288)
-.+|-.+|++||.||.+ +-|++.+ +.+||.|- ..||-..|+.++++... ..+ |.
T Consensus 12 ~~GS~LiV~egQ~Avfv-~~G~i~d-~~~pG~y~l~T~n~P~l~~l~~~~~Gg~spf~~eVyFvn~~~~~~~kwGT~~pi 89 (211)
T PF13421_consen 12 KNGSQLIVREGQCAVFV-NDGKIAD-VFGPGRYTLDTDNIPILSTLKNWKFGGESPFKAEVYFVNTKEITNIKWGTPNPI 89 (211)
T ss_pred cCCCEEEECCCCEEEEE-ECCEEEE-EecCceEEEecCCchHHHHHhhhccCCCCCceEEEEEEECeEecCCccCCCCCe
Confidence 35788899999999999 5577775 99999993 34666778888888763 222 22
Q ss_pred ccccCCccEEEEEEEEEEecCCCCHHHHHHHhCc-------cccccccchHHHHHHHHHHh--hCCHhHHhhhHHHHHHH
Q 023059 90 TTGSHDLQMVKIGLRVLTRPVADQLPTIYRTLGE-------NYNERVLPSIIHETLKAVVA--QYNASQLITQRETVSRE 160 (288)
Q Consensus 90 ~~~TkD~~~v~v~~~v~y~v~~~~~~~~~~~~g~-------~~~~~~l~~~v~~~lr~~i~--~~~~~ei~~~R~~i~~~ 160 (288)
.....+-.++.+.+...|.+++.|+..|+.++.. +.....+++.+.+.+.+.++ ++++.|+.++..+|++.
T Consensus 90 ~~~D~~~~~v~lra~G~ys~rI~Dp~~F~~~~vg~~~~~~~~~i~~~l~~~i~~~i~~~l~~~~~~~~~i~a~~~eis~~ 169 (211)
T PF13421_consen 90 PYRDPEYGPVRLRAFGTYSFRIVDPVLFIRNLVGTQSEFTTEEINEQLRSEIVQAIADALAESKISILDIPAHLDEISEA 169 (211)
T ss_pred eecCCCCCcEEEEEEEEEEEEEeCHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 3344444478888888888889999999998741 22334566666666777776 58999999999999999
Q ss_pred HHHHHHHHHhcCCeEEEEEEeecccCCHHHHHHHHHH
Q 023059 161 IRKILTERAAYFNIALDDVSITSLTFGKEFTFAIEAK 197 (288)
Q Consensus 161 v~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~aie~~ 197 (288)
+++.++..++.+|++|.++.|.+|++|++.++.|+++
T Consensus 170 ~~~~l~~~~~~~Gi~l~~f~I~~i~~pee~~~~i~~~ 206 (211)
T PF13421_consen 170 LKEKLNPEFERYGIELVDFGIESISFPEEVQKAIDKR 206 (211)
T ss_pred HHHHHHHHHHhcCcEEEEEEEEeecCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999644
No 27
>COG4260 Membrane protease subunit, stomatin/prohibitin family [Amino acid transport and metabolism]
Probab=98.93 E-value=3.2e-08 Score=84.71 Aligned_cols=164 Identities=12% Similarity=0.073 Sum_probs=123.5
Q ss_pred HhhccEEEecCCeEEEEEeeeccccceeeCCcce-------------------eecccccceEEEeeeeee-eee----e
Q 023059 33 AATHSLYNVEGGHRAIMFNRIVGVKDKVYPEGTH-------------------LMIPWFERPVIYDVRARP-NLV----E 88 (288)
Q Consensus 33 ~~~~~~~~V~~g~~gVv~~~~G~~~~~~~~pG~~-------------------~~~P~~~~v~~~~~~~~~-~~~----~ 88 (288)
+-.+|..+|.|++-++.++ -|++.+..-++|.| |..|+-++|+.++++.+. +.+ |
T Consensus 36 I~nGs~l~Vrp~qmamfvn-~G~I~dvf~e~G~y~v~~~t~P~L~tlk~~kfgf~sp~k~eVyfvntqe~~girwGT~qp 114 (345)
T COG4260 36 IQNGSILHVRPNQMAMFVN-GGQIADVFAEAGYYKVTTQTLPSLFTLKRFKFGFESPFKQEVYFVNTQEIKGIRWGTPQP 114 (345)
T ss_pred eccCcEEEEecCceEEEEc-CCEEEeeecCCceeEeeecccchhhhhhcceecCCCcccceEEEEecceecceecCCCCC
Confidence 3456788999999999985 35555544558866 345777889999998876 444 2
Q ss_pred ecccc-CCccEEEEEEEEEEecCCCCHHHHHHHhCc-------cccccccchHHHHHHHHHHhhC--CHhHHhhhHHHHH
Q 023059 89 STTGS-HDLQMVKIGLRVLTRPVADQLPTIYRTLGE-------NYNERVLPSIIHETLKAVVAQY--NASQLITQRETVS 158 (288)
Q Consensus 89 ~~~~T-kD~~~v~v~~~v~y~v~~~~~~~~~~~~g~-------~~~~~~l~~~v~~~lr~~i~~~--~~~ei~~~R~~i~ 158 (288)
.++.. .++..+.+.+.-.|.+.+.|+..++..+.. +..+..+-+.+..++...+.++ ++..+-++--+|+
T Consensus 115 in~~dn~~~g~l~lRa~Gtys~kvtDpi~fi~~I~g~~dvy~v~di~~q~ls~~m~al~tai~q~G~~~~~ltan~~els 194 (345)
T COG4260 115 INYFDNFYNGELFLRAHGTYSIKVTDPILFIQQIPGNRDVYTVDDINQQYLSEFMGALATAINQSGVRFSFLTANQMELS 194 (345)
T ss_pred eecccccccceeEEeecceEEEEecCHHHHHHhccCCCceEEHHHHHHHHHHHHHHHHHHHHHhcCceehhhhhhHHHHH
Confidence 33443 667777777777777779999998887731 2223345567777777777765 4455556888999
Q ss_pred HHHHHHHHHHHhcCCeEEEEEEeecccCCHHHHHHHHHH
Q 023059 159 REIRKILTERAAYFNIALDDVSITSLTFGKEFTFAIEAK 197 (288)
Q Consensus 159 ~~v~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~aie~~ 197 (288)
..+++.|...+..+|..|++|+|.+|++|++.+..|+.+
T Consensus 195 k~m~e~Ld~q~~q~Gm~v~sfqvaSisypde~Q~lin~r 233 (345)
T COG4260 195 KYMAEVLDEQWTQYGMAVDSFQVASISYPDESQALINMR 233 (345)
T ss_pred HHHHHHHhHHHHhhCceEeeEEEEEecCcHHHHHHHHhh
Confidence 999999999999999999999999999999999999644
No 28
>PTZ00491 major vault protein; Provisional
Probab=98.31 E-value=4.5e-05 Score=75.21 Aligned_cols=146 Identities=10% Similarity=0.079 Sum_probs=96.8
Q ss_pred EEecCCeEEEEEeeeccccceeeCCcceeecccccceEEEeeeee---------eeee---e------eccccCCccEEE
Q 023059 39 YNVEGGHRAIMFNRIVGVKDKVYPEGTHLMIPWFERPVIYDVRAR---------PNLV---E------STTGSHDLQMVK 100 (288)
Q Consensus 39 ~~V~~g~~gVv~~~~G~~~~~~~~pG~~~~~P~~~~v~~~~~~~~---------~~~~---~------~~~~TkD~~~v~ 100 (288)
+.||-+...-+++.-.+..+.+.+|-+++.-|- +.+..+++..- .+.+ | ..+-|+|...+.
T Consensus 465 ~~vphn~avqvydyk~~~~Rvv~GP~~v~L~pd-E~ftvlsLSgg~PK~~n~i~~l~l~lGPdf~tD~i~vET~DhArL~ 543 (850)
T PTZ00491 465 YKVPHNAAVQLYDYKTKKSRVVFGPDLVMLEPD-EEFTVLSLSGGKPKVPNQIHSLHLFLGPDFMTDVIHVETSDHARLA 543 (850)
T ss_pred EEcCCCcEEEEEEcccCceEEEECCceEEecCC-CceEEEEecCCCCCCcchhhhhhhhhCCccceeEEEEEEcccceEE
Confidence 446655544444321233456889999998887 66666655321 1111 1 247799999999
Q ss_pred EEEEEEEecC--CCCHH---HHHHHhCccccccccchHHHHHHHHHHhhCCHhHHhhhHHH-HHHHHHHHH------HH-
Q 023059 101 IGLRVLTRPV--ADQLP---TIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQRET-VSREIRKIL------TE- 167 (288)
Q Consensus 101 v~~~v~y~v~--~~~~~---~~~~~~g~~~~~~~l~~~v~~~lr~~i~~~~~~ei~~~R~~-i~~~v~~~l------~~- 167 (288)
+..+..|..+ ++|+. .+|. .+|+... +-..+.+-+|..+++.++++++.+-.. |.+.+.... ++
T Consensus 544 l~LsYnW~F~v~~~d~~~~~k~Fs--v~DFvGd-~Ck~iaSrIR~aVA~~~Fd~FHknsa~iiR~aVFg~~~e~~~~r~~ 620 (850)
T PTZ00491 544 LQLSYNWYFDVTDGNPEDAQKCFS--VPDFVGD-ACKTIASRVRAAVASEPFDEFHKNSAKIIRQAVFGSNDETGEVRDS 620 (850)
T ss_pred EEEEEEEEEecCCCChhhHhheec--cCchHHH-HHHHHHHHHHHHHhcCCHHHHhccHHHHHHHHhccCcCCCCccccc
Confidence 9988888864 44453 4444 3677654 678899999999999999999975433 334444411 11
Q ss_pred -HHhcCCeEEEEEEeecccCCH
Q 023059 168 -RAAYFNIALDDVSITSLTFGK 188 (288)
Q Consensus 168 -~l~~~Gi~v~~v~I~~i~~p~ 188 (288)
.|...|+.|++|.|+++.+-+
T Consensus 621 l~F~~N~lvit~VDvqsvEpvD 642 (850)
T PTZ00491 621 LRFPANNLVITNVDVQSVEPVD 642 (850)
T ss_pred eEEccCCeEEEEEeeeeeeecC
Confidence 346889999999999999755
No 29
>PF12127 YdfA_immunity: SigmaW regulon antibacterial; InterPro: IPR022853 This entry represents the uncharacterised protein family UPF0365. Its function is not known. The proteins in this family are found in bacteria. They are about 330 amino acids in length and encoded by a gene located in an operon which confers immunity for the host species to a broad range of antibacterial compounds, unlike the specific immunity proteins that are linked to and co-regulated with their antibiotic-synthesis proteins.
Probab=98.04 E-value=5.6e-05 Score=64.94 Aligned_cols=172 Identities=15% Similarity=0.256 Sum_probs=109.3
Q ss_pred eeeeeeeee-ccccCCccEEEEEEEEEEecCCCCHHHHHHHhCccccccccchHHHHHHHHHHhhCCHhHHhhhHHHHHH
Q 023059 81 RARPNLVES-TTGSHDLQMVKIGLRVLTRPVADQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSR 159 (288)
Q Consensus 81 ~~~~~~~~~-~~~TkD~~~v~v~~~v~y~v~~~~~~~~~~~~g~~~~~~~l~~~v~~~lr~~i~~~~~~ei~~~R~~i~~ 159 (288)
.+..++.|. ....|||..+.+.+.|..|- +..++. |.-..+.++...-++.+..+-|.-+-.+++++-+.|++
T Consensus 123 nPkVI~~P~i~aVAkdGIql~~kArVTVRa---Ni~rLV---GGAgEeTIiARVGEgIVttiGSa~~hk~VLEnPd~ISk 196 (316)
T PF12127_consen 123 NPKVIDTPTIAAVAKDGIQLKVKARVTVRA---NIDRLV---GGAGEETIIARVGEGIVTTIGSAESHKEVLENPDSISK 196 (316)
T ss_pred CCeeecCcchhhhhcCCeEEEEEEEEEEEe---cHHHhc---cCCCcHHHHHHHccceeeeeccchhHHHHhcCHHHHHH
Confidence 333444443 46699999999999999884 333332 44445556666666777777777888899999999998
Q ss_pred HHHHHHHHHH-hcCCeEEEEEEeecccCCHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----h
Q 023059 160 EIRKILTERA-AYFNIALDDVSITSLTFGKEFTFAIE------AKQVAAQEAERAKFIVEKAEQDKKGAIIRAQ-----G 227 (288)
Q Consensus 160 ~v~~~l~~~l-~~~Gi~v~~v~I~~i~~p~~~~~aie------~~~~a~q~ae~a~~~~~~A~ae~~a~~~~A~-----~ 227 (288)
.+.++ -| ...-++|.|+.|-|++..+++-..++ ++.+|+..+|.-+......|+|-.++..+.+ +
T Consensus 197 ~VL~k---gLDagTAFeIlSIDIaDidVG~NIGA~Lq~dQAeADk~iAqAkAEeRRA~AvA~EQEm~A~vqe~rAkvVeA 273 (316)
T PF12127_consen 197 TVLEK---GLDAGTAFEILSIDIADIDVGENIGAKLQTDQAEADKRIAQAKAEERRAMAVAREQEMKAKVQEMRAKVVEA 273 (316)
T ss_pred HHHhh---CCCcCceeEEEEeeeeccccchhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHheeh
Confidence 87664 34 35569999999999999998766653 2334444444433333444444433333333 3
Q ss_pred hHHHHHHHHHHhhcCc----hhhHHHHHHHHHHHHHHh
Q 023059 228 EATSAQLIGQAIAKNP----AFITLRKIEAAREIAQTI 261 (288)
Q Consensus 228 ea~a~~~~~~al~~~p----~~~~~~~le~~~~i~~~l 261 (288)
||+--..+++|+++.. +|++++-+++-.+|=+.+
T Consensus 274 eaevP~A~aeAfr~G~lGvmDYy~~~Ni~aDT~MR~si 311 (316)
T PF12127_consen 274 EAEVPLAMAEAFRSGNLGVMDYYNLKNIQADTEMRESI 311 (316)
T ss_pred hhhchHHHHHHHHcCCCcchhhhhhhcccccchHHHhc
Confidence 4555667788886432 456666666655554433
No 30
>PRK13665 hypothetical protein; Provisional
Probab=97.77 E-value=0.00022 Score=61.08 Aligned_cols=152 Identities=14% Similarity=0.209 Sum_probs=96.1
Q ss_pred eeeeeeeee-ccccCCccEEEEEEEEEEecCCCCHHHHHHHhCccccccccchHHHHHHHHHHhhCCHhHHhhhHHHHHH
Q 023059 81 RARPNLVES-TTGSHDLQMVKIGLRVLTRPVADQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSR 159 (288)
Q Consensus 81 ~~~~~~~~~-~~~TkD~~~v~v~~~v~y~v~~~~~~~~~~~~g~~~~~~~l~~~v~~~lr~~i~~~~~~ei~~~R~~i~~ 159 (288)
.+..++.|. ....|||..+.+.+.+..| .+..++. |.-..+.++...=++.+..+-|.-+-.+++++-+.|++
T Consensus 128 nPkVI~~P~i~aVAkdGIql~~kARVTVR---aNi~rLV---GGAgEeTIiARVGEgIVttIGSa~~hk~VLEnPd~ISk 201 (316)
T PRK13665 128 NPKVIETPFIAAVAKDGIEVKAKARVTVR---ANIDRLV---GGAGEETIIARVGEGIVSTIGSSESHKEVLENPDSISK 201 (316)
T ss_pred CCeeecCCcchhhcccCeEEEEEEEEEee---hhHHHHh---CCCcceeeEeeecCceeecccCcchHHHHhcCHHHHHH
Confidence 334444443 4679999999999999888 3444333 44455566777777777777788888999999999997
Q ss_pred HHHHHHHHHHh-cCCeEEEEEEeecccCCHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----h
Q 023059 160 EIRKILTERAA-YFNIALDDVSITSLTFGKEFTFAIE------AKQVAAQEAERAKFIVEKAEQDKKGAIIRAQ-----G 227 (288)
Q Consensus 160 ~v~~~l~~~l~-~~Gi~v~~v~I~~i~~p~~~~~aie------~~~~a~q~ae~a~~~~~~A~ae~~a~~~~A~-----~ 227 (288)
.+.+ +-|+ ..-++|.|+.|-|++..+++-..++ ++.+|+..+|+-+......|+|-+++..+.+ +
T Consensus 202 ~VL~---kGLDagTAFeIlSIDIADvdVG~NIGA~Lq~dQAEADk~iAqAkAEeRRAmAvA~EQEmkA~v~emrAkvVeA 278 (316)
T PRK13665 202 TVLS---KGLDAGTAFEILSIDIADVDVGKNIGAKLQTDQAEADKRIAQAKAEERRAMAVALEQEMKAKVQEMRAKVVEA 278 (316)
T ss_pred HHHh---ccCCcCceeEEEEEeeeccccchhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 6644 4453 5569999999999999998766663 2333333443333223333333333322222 2
Q ss_pred hHHHHHHHHHHhhc
Q 023059 228 EATSAQLIGQAIAK 241 (288)
Q Consensus 228 ea~a~~~~~~al~~ 241 (288)
||+--+.+++|+++
T Consensus 279 eaeVP~Ama~A~r~ 292 (316)
T PRK13665 279 EAEVPLAMAEALRS 292 (316)
T ss_pred hhhchHHHHHHHHc
Confidence 44455667777754
No 31
>COG1580 FliL Flagellar basal body-associated protein [Cell motility and secretion]
Probab=97.09 E-value=0.051 Score=43.85 Aligned_cols=80 Identities=15% Similarity=0.165 Sum_probs=62.4
Q ss_pred ccEEEEEEEEEEecCCCCHHHHHHHhCccccccccchHHHHHHHHHHhhCCHhHHhh--hHHHHHHHHHHHHHHHHhcCC
Q 023059 96 LQMVKIGLRVLTRPVADQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLIT--QRETVSREIRKILTERAAYFN 173 (288)
Q Consensus 96 ~~~v~v~~~v~y~v~~~~~~~~~~~~g~~~~~~~l~~~v~~~lr~~i~~~~~~ei~~--~R~~i~~~v~~~l~~~l~~~G 173 (288)
+....+.+.+.|+++-+....-.. ++ .+.+++.+...+++.+.+|+.+ .++++..++++.+++-+..-+
T Consensus 76 ~~~~~v~i~i~l~~~n~~~~~el~-------~~--~p~vrd~li~lfsskt~~eL~t~~Gke~Lk~ei~~~in~~L~~g~ 146 (159)
T COG1580 76 PKDRYVKIAITLEVANKALLEELE-------EK--KPEVRDALLMLFSSKTAAELSTPEGKEKLKAEIKDRINTILKEGQ 146 (159)
T ss_pred CCcEEEEEEEEEeeCCHHHHHHHH-------Hh--hHHHHHHHHHHHHhCCHHHhcCchhHHHHHHHHHHHHHHHHhcCC
Confidence 556677888999864444433222 12 5889999999999999999996 899999999999999998866
Q ss_pred eEEEEEEeeccc
Q 023059 174 IALDDVSITSLT 185 (288)
Q Consensus 174 i~v~~v~I~~i~ 185 (288)
.|.+|..++..
T Consensus 147 -~V~dV~fT~fi 157 (159)
T COG1580 147 -VVKDVLFTNFI 157 (159)
T ss_pred -eeEEEeeehhh
Confidence 78888877643
No 32
>COG4864 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.16 E-value=0.18 Score=42.41 Aligned_cols=159 Identities=13% Similarity=0.249 Sum_probs=88.7
Q ss_pred ccCCccEEEEEEEEEEecCCCCHHHHHHHhCccccccccchHHHHHHHHHHhhCCHhHHhhhHHHHHHHHHHHHHHHH-h
Q 023059 92 GSHDLQMVKIGLRVLTRPVADQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERA-A 170 (288)
Q Consensus 92 ~TkD~~~v~v~~~v~y~v~~~~~~~~~~~~g~~~~~~~l~~~v~~~lr~~i~~~~~~ei~~~R~~i~~~v~~~l~~~l-~ 170 (288)
...||..+...+.+..| .+...+ +|....+.++...-...+..+-++-.-.+++.+-+.|++.+.++ -| .
T Consensus 139 vam~gievkakaritvr---ani~rl---vggageetviarvgegivstigss~~h~~vlenpd~isktvl~k---gld~ 209 (328)
T COG4864 139 VAMNGIEVKAKARITVR---ANIERL---VGGAGEETVIARVGEGIVSTIGSSDEHTKVLENPDSISKTVLEK---GLDS 209 (328)
T ss_pred eeccceEEEEEEEEEeh---hhHHHH---hCCCCchhhhhhhccceeeccCCCcchhhHhcCccHHHHHHHHc---cCCC
Confidence 46688888877777766 333333 34344455555555666666666777788888888888876542 23 2
Q ss_pred cCCeEEEEEEeecccCCHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hhhHHHHHHHHHHh
Q 023059 171 YFNIALDDVSITSLTFGKEFTFAI------EAKQVAAQEAERAKFIVEKAEQDKKGAIIRA-----QGEATSAQLIGQAI 239 (288)
Q Consensus 171 ~~Gi~v~~v~I~~i~~p~~~~~ai------e~~~~a~q~ae~a~~~~~~A~ae~~a~~~~A-----~~ea~a~~~~~~al 239 (288)
...+++.++.|.|++..+++-.-+ .++.+|+..+++-+.....-|+|-++++.+- ++|++.-..+++||
T Consensus 210 gtafeilsidiadvdigkniga~lqteqa~adk~iaqakaeerramava~eqemrarveemrakvveaeaevp~als~al 289 (328)
T COG4864 210 GTAFEILSIDIADVDIGKNIGAKLQTEQAEADKNIAQAKAEERRAMAVALEQEMRARVEEMRAKVVEAEAEVPLALSEAL 289 (328)
T ss_pred CceeEEEEeeeeccccccccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 445899999999999988765444 2333333333322222222222222222111 23444455667777
Q ss_pred hcCc----hhhHHHHHHHHHHHHH
Q 023059 240 AKNP----AFITLRKIEAAREIAQ 259 (288)
Q Consensus 240 ~~~p----~~~~~~~le~~~~i~~ 259 (288)
.+.. +|+.++.+++-..|-+
T Consensus 290 r~gnigvmdy~n~~nv~adt~mr~ 313 (328)
T COG4864 290 REGNIGVMDYYNMKNVQADTAMRD 313 (328)
T ss_pred HhCCchhhhhhhhhcccccHHHHH
Confidence 5422 4555555555444433
No 33
>PRK12785 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=94.79 E-value=1 Score=36.75 Aligned_cols=52 Identities=10% Similarity=0.094 Sum_probs=43.3
Q ss_pred chHHHHHHHHHHhhCCHhHHhh--hHHHHHHHHHHHHHHHHhcCCeEEEEEEeecc
Q 023059 131 PSIIHETLKAVVAQYNASQLIT--QRETVSREIRKILTERAAYFNIALDDVSITSL 184 (288)
Q Consensus 131 ~~~v~~~lr~~i~~~~~~ei~~--~R~~i~~~v~~~l~~~l~~~Gi~v~~v~I~~i 184 (288)
.+.+++.+-..+++.+.+|+.+ .++.+.+++.+.++..+.+- .|.+|.+++.
T Consensus 110 ~p~Ird~i~~~Ls~~~~~~L~~~~Gk~~Lr~ei~~~in~~l~~~--~V~~VlFt~F 163 (166)
T PRK12785 110 MPRVTDAFQTYLRELRPSDLNGSAGLFRLKEELLRRVNVALAPA--QVNAVLFKEV 163 (166)
T ss_pred chHHHHHHHHHHHhCCHHHhcChHHHHHHHHHHHHHHHhhcCCC--ceeEEEEEee
Confidence 4778888888999999999985 79999999999999988753 3777777664
No 34
>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfC (High frequency of lysogenization C). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another band 7 family member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=93.47 E-value=0.42 Score=41.22 Aligned_cols=79 Identities=14% Similarity=0.183 Sum_probs=46.1
Q ss_pred HHHHHHHHHHhcCCeEEEEEEeecccCCH-HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 023059 160 EIRKILTERAAYFNIALDDVSITSLTFGK-EFTFAIEAKQVAAQEAERAK-FIVEKAEQDKKGAIIRAQGEATSAQLIGQ 237 (288)
Q Consensus 160 ~v~~~l~~~l~~~Gi~v~~v~I~~i~~p~-~~~~aie~~~~a~q~ae~a~-~~~~~A~ae~~a~~~~A~~ea~a~~~~~~ 237 (288)
.+.+.+.+.+++. +.=..+.|.++.+.+ .+-+.+.+.......+++.+ .....|++++++.+++|++++++..+.++
T Consensus 120 ~i~~~i~~~l~~~-l~~~Gi~i~~v~i~~i~~p~~i~~ai~~~~~ae~~~~a~~~~ae~~~~a~~~~aea~~~~~~~~Ae 198 (242)
T cd03405 120 ELMEEIRRAVAEE-AKELGIEVVDVRIKRIDLPEEVSESVYRRMRAERERIAAEFRAEGEEEAERIRADADRERTVILAE 198 (242)
T ss_pred HHHHHHHHHHHHH-HHccCcEEEEEEEEeccCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444432 333467777777643 33445544444445555544 55557777777777777777777777776
Q ss_pred Hh
Q 023059 238 AI 239 (288)
Q Consensus 238 al 239 (288)
|.
T Consensus 199 a~ 200 (242)
T cd03405 199 AY 200 (242)
T ss_pred HH
Confidence 65
No 35
>PF11978 MVP_shoulder: Shoulder domain; InterPro: IPR021870 This domain is found in the Major Vault Protein and has been called the shoulder domain []. This family includes two bacterial proteins A6FXE2 from SWISSPROT and A1ZGE7 from SWISSPROT. This suggests that some bacteria may possess vault particles. ; PDB: 2ZUO_G 2QZV_B 2ZV5_c 2ZV4_Y.
Probab=93.16 E-value=0.36 Score=36.50 Aligned_cols=97 Identities=11% Similarity=0.099 Sum_probs=64.1
Q ss_pred ccccCCccEEEEEEEEEEecCC--CCHHHHHHHhC-ccccccccchHHHHHHHHHHhhCCHhHHhhhHHHHHH-HHH---
Q 023059 90 TTGSHDLQMVKIGLRVLTRPVA--DQLPTIYRTLG-ENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSR-EIR--- 162 (288)
Q Consensus 90 ~~~TkD~~~v~v~~~v~y~v~~--~~~~~~~~~~g-~~~~~~~l~~~v~~~lr~~i~~~~~~ei~~~R~~i~~-~v~--- 162 (288)
.+-|+|-..+.+..+..|..+. .++.+.-.-+. +|+... +-..+.+-+|..+++.+.+++..+-..|-. .+.
T Consensus 10 ~VET~DhArL~L~LsYnw~F~v~~~~~~~~~k~F~VpDFVGd-~Ck~iaSRIR~aVa~~~Fd~FHknSa~iiR~aVFg~~ 88 (118)
T PF11978_consen 10 TVETADHARLQLQLSYNWHFDVDRKDPEDAAKLFSVPDFVGD-ACKAIASRIRGAVASVTFDDFHKNSARIIRQAVFGFD 88 (118)
T ss_dssp EEE-TT-EEEEEEEEEEEEE--TTTHHHHHHHTTSSTTHHHH-HHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHSTS-
T ss_pred EEeecccceeeEEEEEEEEEecCCCChhHHHHhcCCcchHHH-HHHHHHHHHHHHHhcCcHHHHcccHHHHHHHHhcCCC
Confidence 4679999999998888887644 33333333333 677654 578899999999999999999975443332 221
Q ss_pred --HHHHH--HHhcCCeEEEEEEeecccCC
Q 023059 163 --KILTE--RAAYFNIALDDVSITSLTFG 187 (288)
Q Consensus 163 --~~l~~--~l~~~Gi~v~~v~I~~i~~p 187 (288)
.+.+. .+...|+.|++|.|+++.|-
T Consensus 89 ~~~~~r~~~~F~~N~LvIt~vDvqsvEpv 117 (118)
T PF11978_consen 89 ENGEVRDGLRFPANNLVITSVDVQSVEPV 117 (118)
T ss_dssp --E--SS-EEETTTTEEEEEEEEEEEEES
T ss_pred CCCCccceeEEcCCCeEEEEEeeeEeccC
Confidence 22222 24678999999999998763
No 36
>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=91.59 E-value=1.4 Score=38.52 Aligned_cols=82 Identities=13% Similarity=0.142 Sum_probs=49.3
Q ss_pred HHHHHHHHHhcCCeEEE--EEEeecccCCH-HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 023059 161 IRKILTERAAYFNIALD--DVSITSLTFGK-EFTFAIEAKQVAAQEAE-RAKFIVEKAEQDKKGAIIRAQGEATSAQLIG 236 (288)
Q Consensus 161 v~~~l~~~l~~~Gi~v~--~v~I~~i~~p~-~~~~aie~~~~a~q~ae-~a~~~~~~A~ae~~a~~~~A~~ea~a~~~~~ 236 (288)
+.+.+.+.++.. +.-. .+.|.++.+-+ ..-..+.+...+.+.++ +++.....|++++++.+.+|+|+|++..+.+
T Consensus 143 i~~~i~~~l~~~-~~~~~~Gi~v~~v~i~~i~~p~~i~~a~~~~~~A~q~~~~~~~eae~~a~~~~~~A~~ea~~~~~~A 221 (266)
T cd03404 143 IAQDVRELLQAI-LDAYKAGIEIVGVNLQDADPPEEVQDAFDDVNKARQDRERLINEAEAYANEVVPKARGEAARIIQEA 221 (266)
T ss_pred HHHHHHHHHHHH-hhccCCCeEEEEEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 444444444432 2222 68888887754 34455654444433333 3444555666677778888999998888888
Q ss_pred HHhhcCc
Q 023059 237 QAIAKNP 243 (288)
Q Consensus 237 ~al~~~p 243 (288)
+|.++..
T Consensus 222 ~a~~~~~ 228 (266)
T cd03404 222 EAYKEEV 228 (266)
T ss_pred HHHHHhH
Confidence 8875443
No 37
>PRK06654 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=91.49 E-value=7 Score=32.21 Aligned_cols=76 Identities=13% Similarity=0.212 Sum_probs=54.5
Q ss_pred cEEEEEEEEEEecCCCCHHHHHHHhCccccccccchHHHHHHHHHHhhCCHhHHhhhHHHHHHHHHHHHHHHHhcCCeEE
Q 023059 97 QMVKIGLRVLTRPVADQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAAYFNIAL 176 (288)
Q Consensus 97 ~~v~v~~~v~y~v~~~~~~~~~~~~g~~~~~~~l~~~v~~~lr~~i~~~~~~ei~~~R~~i~~~v~~~l~~~l~~~Gi~v 176 (288)
....+.+++.|.. ++.. ...++ ..+ .+.++..+...+++.+.+|+. .+.++.++++++++..+.+- .|
T Consensus 101 ~r~~vki~l~~e~--~d~~-l~~EL----~~r--~pqIRD~Ii~~LssKt~~eL~-Gk~~LKeEI~~rIN~iL~~G--kV 168 (181)
T PRK06654 101 KTFVVKLALGYAE--NNKN-ILNEL----GRR--KVRLKDIIREYFSQKTGQELK-NESQIKAEIKARINSILRNG--EI 168 (181)
T ss_pred ceEEEEEEEEEEc--CCHH-HHHHH----Hhc--cHHHHHHHHHHHHhCCHHHHc-CHHHHHHHHHHHHHHhcCCC--ce
Confidence 4445667777763 3333 33322 222 588999999999999999999 89999999999999888753 36
Q ss_pred EEEEeecc
Q 023059 177 DDVSITSL 184 (288)
Q Consensus 177 ~~v~I~~i 184 (288)
.+|.+++.
T Consensus 169 ~~VYFTeF 176 (181)
T PRK06654 169 KDIAFTQI 176 (181)
T ss_pred EEEEEEEE
Confidence 66666553
No 38
>TIGR01932 hflC HflC protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH protease appears to be negative (PubMed:8947034, PubMed:96367)
Probab=91.29 E-value=1.5 Score=39.61 Aligned_cols=33 Identities=12% Similarity=0.193 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhh
Q 023059 208 KFIVEKAEQDKKGAIIRAQGEATSAQLIGQAIA 240 (288)
Q Consensus 208 ~~~~~~A~ae~~a~~~~A~~ea~a~~~~~~al~ 240 (288)
......+++++++..++|+|++++.+++++|.+
T Consensus 224 ~a~~~r~ege~~a~~i~a~A~~e~~~~~aeA~a 256 (317)
T TIGR01932 224 IARMHRSQGEEKAEEILGKAEYEVRKILSEAYR 256 (317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666778888888888888888888888863
No 39
>PRK11029 FtsH protease regulator HflC; Provisional
Probab=91.18 E-value=1.5 Score=39.95 Aligned_cols=63 Identities=10% Similarity=0.181 Sum_probs=44.8
Q ss_pred EEEeecccCCH-HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhh
Q 023059 178 DVSITSLTFGK-EFTFAIEAKQVAAQEAERAK-FIVEKAEQDKKGAIIRAQGEATSAQLIGQAIA 240 (288)
Q Consensus 178 ~v~I~~i~~p~-~~~~aie~~~~a~q~ae~a~-~~~~~A~ae~~a~~~~A~~ea~a~~~~~~al~ 240 (288)
.+.|.++.+-+ .+=..+.+....++.+|+.+ .....|+++++++.++|+|+.++.++.++|.+
T Consensus 202 GI~V~~V~i~~i~~P~~v~~ai~~~~~Aere~~a~~~~aege~~a~~~~a~A~~e~~~~~AeA~~ 266 (334)
T PRK11029 202 GIEVVDVRIKQINLPTEVSDAIYNRMRAEREAVARRHRSQGQEEAEKLRATADYEVTRTLAEAER 266 (334)
T ss_pred CcEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 46777777654 44555655565666666654 45778888999998898888888888888764
No 40
>PRK05696 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=90.77 E-value=7.9 Score=31.56 Aligned_cols=54 Identities=17% Similarity=0.193 Sum_probs=41.8
Q ss_pred chHHHHHHHHHHhhCCHhHHhh--hHHHHHHHHHHHHHHHHhcC-C-eEEEEEEeecc
Q 023059 131 PSIIHETLKAVVAQYNASQLIT--QRETVSREIRKILTERAAYF-N-IALDDVSITSL 184 (288)
Q Consensus 131 ~~~v~~~lr~~i~~~~~~ei~~--~R~~i~~~v~~~l~~~l~~~-G-i~v~~v~I~~i 184 (288)
.+.+++.+-..+++.+.+|+.+ .++.+.+++..+++..++.. | -.|.+|.+++.
T Consensus 110 ~p~IRd~i~~~Ls~k~~~~L~~~~gk~~Lr~el~~~i~~~l~~~~g~~~V~~VlFt~f 167 (170)
T PRK05696 110 IPLIESALLMTFSSATVDQLSTPAGKEELRQKALASVQETLQKVTGKPVVEKVLFTGF 167 (170)
T ss_pred hHHHHHHHHHHHhcCCHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCceeEEeeeec
Confidence 4778999999999999999985 78888888888888777542 2 25677776653
No 41
>PF03748 FliL: Flagellar basal body-associated protein FliL; InterPro: IPR005503 This FliL protein controls the rotational direction of the flagella during chemotaxis []. FliL is a cytoplasmic membrane protein associated with the basal body [].; GO: 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009425 bacterial-type flagellum basal body
Probab=90.55 E-value=5 Score=29.18 Aligned_cols=52 Identities=15% Similarity=0.209 Sum_probs=43.6
Q ss_pred chHHHHHHHHHHhhCCHhHHhh--hHHHHHHHHHHHHHHHHhcCCeEEEEEEeecc
Q 023059 131 PSIIHETLKAVVAQYNASQLIT--QRETVSREIRKILTERAAYFNIALDDVSITSL 184 (288)
Q Consensus 131 ~~~v~~~lr~~i~~~~~~ei~~--~R~~i~~~v~~~l~~~l~~~Gi~v~~v~I~~i 184 (288)
.+.+++.+-..+++++.+|+.+ .++.+.+++++.+++.+.+- .|.+|.+++.
T Consensus 43 ~~~ird~ii~~l~~~~~~~l~~~~g~~~Lk~~l~~~in~~l~~~--~V~~V~ft~f 96 (99)
T PF03748_consen 43 MPRIRDAIISYLSSKTAEDLSGPEGKERLKDELKDRINKILGKG--KVKDVYFTDF 96 (99)
T ss_pred cHHHHHHHHHHHHcCCHHHhcChhhHHHHHHHHHHHHHHhhccC--cEEEEEEEEE
Confidence 5788999999999999999994 89999999999999998543 3777777653
No 42
>PRK08455 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=89.03 E-value=12 Score=30.99 Aligned_cols=52 Identities=17% Similarity=0.210 Sum_probs=43.5
Q ss_pred chHHHHHHHHHHhhCCHhHHhh--hHHHHHHHHHHHHHHHHhcCCeEEEEEEeecc
Q 023059 131 PSIIHETLKAVVAQYNASQLIT--QRETVSREIRKILTERAAYFNIALDDVSITSL 184 (288)
Q Consensus 131 ~~~v~~~lr~~i~~~~~~ei~~--~R~~i~~~v~~~l~~~l~~~Gi~v~~v~I~~i 184 (288)
.+.+++.+-..+++.+.+|+.+ .|+.+.+++.+.++..+.+- .|.+|.+++.
T Consensus 126 ~p~IRD~ii~~Ls~kt~~dL~t~~Gk~~Lk~ei~~~iN~~L~~g--~V~~VyFT~F 179 (182)
T PRK08455 126 DPVIRDIIIRILSSKTVEEVSTNKGKERLKDEIVGKLNEFLIDG--FIKNVFFTDF 179 (182)
T ss_pred hhHHHHHHHHHHHcCCHHHhcCHHHHHHHHHHHHHHHHHHhccC--ceeEEEeEee
Confidence 4778999999999999999985 78999999999999999763 4677776653
No 43
>PRK07021 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=87.33 E-value=14 Score=29.84 Aligned_cols=54 Identities=19% Similarity=0.268 Sum_probs=43.6
Q ss_pred chHHHHHHHHHHhhCCHhHHhh--hHHHHHHHHHHHHHHHHhcCC--eEEEEEEeecc
Q 023059 131 PSIIHETLKAVVAQYNASQLIT--QRETVSREIRKILTERAAYFN--IALDDVSITSL 184 (288)
Q Consensus 131 ~~~v~~~lr~~i~~~~~~ei~~--~R~~i~~~v~~~l~~~l~~~G--i~v~~v~I~~i 184 (288)
.+.+++.+-..++..+.+|+.+ .++.+.+++++.++..+..-+ -.|.+|.+++.
T Consensus 102 ~p~IRd~ii~~Ls~k~~~~L~~~eGk~~Lk~ei~~~in~~l~~~~~~~~V~~VlFt~f 159 (162)
T PRK07021 102 LPEVRSRLLLLLSRKHAAELATEEGKQKLAAEIKQTLSQPLVPGQPPQVVTDVLFTAF 159 (162)
T ss_pred CHHHHHHHHHHHhcCCHHHhcCHHHHHHHHHHHHHHHHHHHhccCCCCceeEEeeeec
Confidence 4678888888999999999985 889999999999999886432 35777777653
No 44
>PRK07718 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=86.91 E-value=8.4 Score=30.44 Aligned_cols=52 Identities=15% Similarity=0.217 Sum_probs=43.7
Q ss_pred chHHHHHHHHHHhhCCHhHHhh--hHHHHHHHHHHHHHHHHhcCCeEEEEEEeecc
Q 023059 131 PSIIHETLKAVVAQYNASQLIT--QRETVSREIRKILTERAAYFNIALDDVSITSL 184 (288)
Q Consensus 131 ~~~v~~~lr~~i~~~~~~ei~~--~R~~i~~~v~~~l~~~l~~~Gi~v~~v~I~~i 184 (288)
.+.+++.+-..+++.+.+|+.+ .|+.+.+++.+.++..+.+ | .|.+|.+++.
T Consensus 86 ~p~Ird~ii~~L~~~~~~~l~~~~G~~~Lr~el~~~in~~l~~-g-~V~~Vyft~f 139 (142)
T PRK07718 86 DFQVKNIIIEELADMNAEDFKGKKGLEALKEQLKEKINNLMQE-G-KVEKVYITSF 139 (142)
T ss_pred ChhhHHHHHHHHHcCCHHHhcChhHHHHHHHHHHHHHHHhhcc-C-ceEEEEEEee
Confidence 4678888889999999999985 7999999999999988876 4 5777777653
No 45
>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=86.84 E-value=4.3 Score=35.52 Aligned_cols=29 Identities=34% Similarity=0.406 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHh
Q 023059 211 VEKAEQDKKGAIIRAQGEATSAQLIGQAI 239 (288)
Q Consensus 211 ~~~A~ae~~a~~~~A~~ea~a~~~~~~al 239 (288)
+..|++++.+.+.+|+|+|++..+.+++.
T Consensus 163 ~~~Aea~~~~~i~~A~~ea~a~~~~Aeg~ 191 (262)
T cd03407 163 VHKAEAEKIKDIKAAEADAEAKRLQGVGA 191 (262)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 33444444445555555555555554443
No 46
>PRK05697 flagellar basal body-associated protein FliL-like protein; Validated
Probab=82.26 E-value=22 Score=27.90 Aligned_cols=54 Identities=19% Similarity=0.207 Sum_probs=44.3
Q ss_pred chHHHHHHHHHHhhCCHhHHhh--hHHHHHHHHHHHHHHHHhcC-C-eEEEEEEeecc
Q 023059 131 PSIIHETLKAVVAQYNASQLIT--QRETVSREIRKILTERAAYF-N-IALDDVSITSL 184 (288)
Q Consensus 131 ~~~v~~~lr~~i~~~~~~ei~~--~R~~i~~~v~~~l~~~l~~~-G-i~v~~v~I~~i 184 (288)
.+.+++.+-..+++.+.+|+.+ .|+.+.+++.++++..+.+- | -.|.+|.+++.
T Consensus 77 ~P~IRd~ii~lLs~~t~~eL~t~eGke~Lr~eil~~in~~L~~~~g~~~V~~VlFT~F 134 (137)
T PRK05697 77 DPLIRNALVELLGQQTEDKVKSLTGREEIRQECLKQVNELLEQETGKPLVVDLLFTKY 134 (137)
T ss_pred CHHHHHHHHHHHHcCCHHHhcCHHHHHHHHHHHHHHHHHHHhhccCCCceeEEeeeee
Confidence 4789999999999999999985 89999999999999998642 2 24777777653
No 47
>PLN03086 PRLI-interacting factor K; Provisional
Probab=78.81 E-value=2.7 Score=40.85 Aligned_cols=50 Identities=12% Similarity=0.139 Sum_probs=26.4
Q ss_pred HHHHhhhhhHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHhcCCCCEEEEcCCc
Q 023059 220 GAIIRAQGEATSAQLIGQAIAKNPAFITLRKIEAAREIAQTISKSSNKVYLNADD 274 (288)
Q Consensus 220 a~~~~A~~ea~a~~~~~~al~~~p~~~~~~~le~~~~i~~~l~~~~~~i~l~~~~ 274 (288)
+++..++++.+|.+-+.+.+..+.-+.=.+.+++... .+++.+|+|||+.
T Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~GdKI~LPpSa 100 (567)
T PLN03086 51 RRLDAIEAQIKADQQMQESLQAGRGIVFSRIFEAVSF-----QGNGDKIKLPPSC 100 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeecccc-----CCCCCeEEcCHHH
Confidence 3343444444444555555544432222355555544 2567889999873
No 48
>TIGR01933 hflK HflK protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (PubMed:8947034,PubMed:96367)
Probab=77.86 E-value=15 Score=32.03 Aligned_cols=11 Identities=18% Similarity=0.582 Sum_probs=5.2
Q ss_pred EEEeecccCCH
Q 023059 178 DVSITSLTFGK 188 (288)
Q Consensus 178 ~v~I~~i~~p~ 188 (288)
.+.|.++.+-+
T Consensus 134 GI~V~~v~I~~ 144 (261)
T TIGR01933 134 GITVTDVNFQS 144 (261)
T ss_pred CcEEEEEEEEe
Confidence 34555555433
No 49
>COG2268 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.05 E-value=16 Score=35.36 Aligned_cols=30 Identities=13% Similarity=0.236 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHhhc
Q 023059 212 EKAEQDKKGAIIRAQGEATSAQLIGQAIAK 241 (288)
Q Consensus 212 ~~A~ae~~a~~~~A~~ea~a~~~~~~al~~ 241 (288)
..+.+++++.+.++++||++.+.+++|+..
T Consensus 420 a~~~~~Aea~r~kG~AEAea~r~lAEa~~~ 449 (548)
T COG2268 420 AEIKAEAEAIREKGKAEAEAKRALAEAIQV 449 (548)
T ss_pred HHHHhHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 344445566666777788888889998754
No 50
>cd03403 Band_7_stomatin_like Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Stomatin is widely expressed and, highly expressed in red blood cells. It localizes predominantly to the plasma membrane and to intracellular vesicles of the endocytic pathway, where it is present in higher order homo-oligomeric complexes (of between 9 and 12 monomers). Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and, is implicated in trafficking of Glut1 glucose transporters. Prohibitin is a mitochondrial inner-membrane protein hypothesized to act as a chaperone for the stabilization of mitochondrial proteins. Podicin local
Probab=76.29 E-value=7.8 Score=32.54 Aligned_cols=71 Identities=13% Similarity=0.194 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHH-HhcCCeEEEEEEeecccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 023059 155 ETVSREIRKILTER-AAYFNIALDDVSITSLTFGKEFTFAIEAKQVAAQEAERAKFIVEKAEQDKKGAIIRAQGEATSAQ 233 (288)
Q Consensus 155 ~~i~~~v~~~l~~~-l~~~Gi~v~~v~I~~i~~p~~~~~aie~~~~a~q~ae~a~~~~~~A~ae~~a~~~~A~~ea~a~~ 233 (288)
+++.+.+...+... +.=..+.|.++.+.+ .+-+.+.+.+.+++.++.+ +..|++++++.+++|+|++++..
T Consensus 115 ~~i~~~l~~~l~~~Gi~v~~v~i~~i~~p~-~~~~ai~~~~~A~~~~~a~-------i~~A~ge~~a~~~~aea~~~~~~ 186 (215)
T cd03403 115 AELVEILDEATDPWGVKVERVEIKDIILPQ-EIQEAMAKQAEAEREKRAK-------IIEAEGERQAAILLAEAAKQAAI 186 (215)
T ss_pred HHHHHHHHHHHhccCeEEEEEEEeeecCCH-HHHHHHHHHHHHHHHHHHH-------HHHhHHHHHHHHHHHHHHHHHcc
Confidence 34444455555432 344467888999876 6778888888777765433 45577888888888888776654
No 51
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=71.97 E-value=50 Score=26.51 Aligned_cols=8 Identities=0% Similarity=0.044 Sum_probs=3.3
Q ss_pred HhHHhhhH
Q 023059 147 ASQLITQR 154 (288)
Q Consensus 147 ~~ei~~~R 154 (288)
+..++..|
T Consensus 29 I~~~LeeR 36 (154)
T PRK06568 29 ILNSLDAK 36 (154)
T ss_pred HHHHHHHH
Confidence 33344444
No 52
>PRK01558 V-type ATP synthase subunit E; Provisional
Probab=70.26 E-value=30 Score=28.93 Aligned_cols=8 Identities=25% Similarity=0.372 Sum_probs=4.2
Q ss_pred CEEEEcCC
Q 023059 266 NKVYLNAD 273 (288)
Q Consensus 266 ~~i~l~~~ 273 (288)
-.|+++++
T Consensus 121 ~~I~~~~~ 128 (198)
T PRK01558 121 LEIILNES 128 (198)
T ss_pred eeEEECHH
Confidence 34566544
No 53
>COG0330 HflC Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones]
Probab=68.19 E-value=21 Score=31.53 Aligned_cols=76 Identities=16% Similarity=0.204 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHH-HHhcCCeEEEEEEeecccCCHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhhhhH
Q 023059 155 ETVSREIRKILTE-RAAYFNIALDDVSITSLTFGKEFTFAIEAKQVAAQEAERAK----FIVEKAEQDKKGAIIRAQGEA 229 (288)
Q Consensus 155 ~~i~~~v~~~l~~-~l~~~Gi~v~~v~I~~i~~p~~~~~aie~~~~a~q~ae~a~----~~~~~A~ae~~a~~~~A~~ea 229 (288)
..+.+.+.+.++. -+.-..+++.++.... +.-..+.+.+.+.+..+.+..+|+ ..+..|++++++.++.|+|++
T Consensus 144 ~~i~~~l~~~~~~~Gi~V~~V~i~~i~~p~-ev~~a~~~~~~Aer~~ra~i~~Ae~~~~~~~~~a~g~~~a~~i~aea~~ 222 (291)
T COG0330 144 AKIREILDEAADPWGIKVVDVEIKDIDPPE-EVQAAMEKQMAAERDKRAEILEAEGEAQAAILRAEGEAEAAIILAEAEA 222 (291)
T ss_pred HHHHHHHHHhhhhcCcEEEEEEEeecCCCH-HHHHHHHHHHHHHHHHHHHHHHhHhHHhhhhhhhhhhHHHHHHHHHHHH
Confidence 3444444444444 2455568888887643 333367777654444333222221 122345555555555555554
Q ss_pred HH
Q 023059 230 TS 231 (288)
Q Consensus 230 ~a 231 (288)
++
T Consensus 223 ~a 224 (291)
T COG0330 223 EA 224 (291)
T ss_pred HH
Confidence 43
No 54
>KOG2668 consensus Flotillins [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=63.17 E-value=91 Score=28.54 Aligned_cols=23 Identities=22% Similarity=0.242 Sum_probs=12.8
Q ss_pred HHHHHHHH----HHhcCCCCEEEEcCC
Q 023059 251 IEAAREIA----QTISKSSNKVYLNAD 273 (288)
Q Consensus 251 le~~~~i~----~~l~~~~~~i~l~~~ 273 (288)
||++..|+ +.|++.+...++++|
T Consensus 358 Lealp~Ia~~ia~plaktnkI~v~s~g 384 (428)
T KOG2668|consen 358 LEALPMIAAEIAAPLAKTNKISVWSHG 384 (428)
T ss_pred HHHHHHHHHHhccchhhcCeEEEEecC
Confidence 45554443 345566666666665
No 55
>PRK04057 30S ribosomal protein S3Ae; Validated
Probab=62.65 E-value=52 Score=27.74 Aligned_cols=82 Identities=11% Similarity=0.147 Sum_probs=50.8
Q ss_pred eccccCCccEEEEEEEEEEecCCCCHHHHHHHhCccccccccchHHHHHHHHHHhhCCHhHHhhh--HHHHHHHHHHHHH
Q 023059 89 STTGSHDLQMVKIGLRVLTRPVADQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQ--RETVSREIRKILT 166 (288)
Q Consensus 89 ~~~~TkD~~~v~v~~~v~y~v~~~~~~~~~~~~g~~~~~~~l~~~v~~~lr~~i~~~~~~ei~~~--R~~i~~~v~~~l~ 166 (288)
.++.|+||..+.+-..+.-.- - +. ....+.|+....+.+...+++.+++|+... -+.|..++..+.+
T Consensus 100 vdvkTkDGy~lRv~~i~~T~~-r--a~--------~sq~~~IRk~m~~~i~~~~~~~~~~e~V~~~i~g~i~~eI~~~~k 168 (203)
T PRK04057 100 VDVTTKDGYKVRVKPVALTTK-R--AR--------TSQKHAIRKIMEEIIEEKASELTFEEFVQEIVFGKLASEIYKEAK 168 (203)
T ss_pred EEEEcCCCCEEEEEEEEEEch-h--hh--------hhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHccchHHHHHHHhhh
Confidence 467899999998876554331 1 11 112234788888889999999999999963 2555555555554
Q ss_pred HHHhcCCeEEEEEEe
Q 023059 167 ERAAYFNIALDDVSI 181 (288)
Q Consensus 167 ~~l~~~Gi~v~~v~I 181 (288)
.-.--..++|..+.+
T Consensus 169 ~IyPlr~veIrKvkv 183 (203)
T PRK04057 169 KIYPLRRVEIRKSKV 183 (203)
T ss_pred hccCcceEEEEEEEE
Confidence 432222344444443
No 56
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=59.40 E-value=1.1e+02 Score=30.83 Aligned_cols=39 Identities=18% Similarity=0.211 Sum_probs=24.1
Q ss_pred HHHHHHH-HHhcCCeEEEEEE----eecccCCHHHHHHHHHHHH
Q 023059 161 IRKILTE-RAAYFNIALDDVS----ITSLTFGKEFTFAIEAKQV 199 (288)
Q Consensus 161 v~~~l~~-~l~~~Gi~v~~v~----I~~i~~p~~~~~aie~~~~ 199 (288)
..+.+++ .|...||.|.|-. +=....|+++++..+++..
T Consensus 519 ~~D~iRd~~L~~~Gi~l~D~~~g~~~~~~~~~~~~~~~~~~~~~ 562 (651)
T PTZ00399 519 LCDKLRDEWLPNLGIRIEDKPDGPSVWKLDDKEELQREKEEKEA 562 (651)
T ss_pred HHHHHHHHHHHHCCCEEEEcCCCceEEEECCHHHHHHHHHHHHH
Confidence 3556666 5888999998752 2223445666666655543
No 57
>PRK10930 FtsH protease regulator HflK; Provisional
Probab=59.34 E-value=33 Score=32.36 Aligned_cols=8 Identities=13% Similarity=0.663 Sum_probs=3.7
Q ss_pred EEeecccC
Q 023059 179 VSITSLTF 186 (288)
Q Consensus 179 v~I~~i~~ 186 (288)
+.|.++.+
T Consensus 231 I~V~~V~I 238 (419)
T PRK10930 231 ITLLDVNF 238 (419)
T ss_pred eEEEEEEE
Confidence 44444444
No 58
>PRK01005 V-type ATP synthase subunit E; Provisional
Probab=55.83 E-value=75 Score=26.83 Aligned_cols=8 Identities=13% Similarity=0.281 Sum_probs=5.4
Q ss_pred cCchhhHH
Q 023059 241 KNPAFITL 248 (288)
Q Consensus 241 ~~p~~~~~ 248 (288)
.+|++++-
T Consensus 106 ~d~~~l~~ 113 (207)
T PRK01005 106 TDPEVSAK 113 (207)
T ss_pred cCHHHHHH
Confidence 47777773
No 59
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=55.82 E-value=88 Score=25.22 Aligned_cols=18 Identities=6% Similarity=0.146 Sum_probs=9.2
Q ss_pred HhHHhhhH-HHHHHHHHHH
Q 023059 147 ASQLITQR-ETVSREIRKI 164 (288)
Q Consensus 147 ~~ei~~~R-~~i~~~v~~~ 164 (288)
+..++..| +.|...+.+.
T Consensus 35 i~~~le~R~~~I~~~l~~A 53 (167)
T PRK14475 35 LAGALDAYAAKIQAELDEA 53 (167)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 45566555 4555555443
No 60
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=55.73 E-value=1.1e+02 Score=24.80 Aligned_cols=16 Identities=19% Similarity=0.291 Sum_probs=7.7
Q ss_pred CHhHHhhhHH-HHHHHH
Q 023059 146 NASQLITQRE-TVSREI 161 (288)
Q Consensus 146 ~~~ei~~~R~-~i~~~v 161 (288)
++..++..|. .|...+
T Consensus 40 pi~~~l~~R~~~I~~~l 56 (173)
T PRK13460 40 VILKALDERASGVQNDI 56 (173)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 3455565553 444443
No 61
>PRK02292 V-type ATP synthase subunit E; Provisional
Probab=52.90 E-value=61 Score=26.62 Aligned_cols=10 Identities=30% Similarity=0.348 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 023059 214 AEQDKKGAII 223 (288)
Q Consensus 214 A~ae~~a~~~ 223 (288)
++++++++.+
T Consensus 34 ~ea~~~a~~i 43 (188)
T PRK02292 34 AEAEADAEEI 43 (188)
T ss_pred HHHHHHHHHH
Confidence 3444443333
No 62
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=52.79 E-value=88 Score=27.21 Aligned_cols=19 Identities=11% Similarity=0.275 Sum_probs=9.7
Q ss_pred CHhHHhhhHH-HHHHHHHHH
Q 023059 146 NASQLITQRE-TVSREIRKI 164 (288)
Q Consensus 146 ~~~ei~~~R~-~i~~~v~~~ 164 (288)
++..++..|. .|...+.+.
T Consensus 29 Pi~~~l~eR~~~I~~~l~~A 48 (250)
T PRK14474 29 PIIQVMKKRQQRIANRWQDA 48 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 4555666553 444444433
No 63
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=51.51 E-value=1.1e+02 Score=24.51 Aligned_cols=18 Identities=6% Similarity=0.254 Sum_probs=8.8
Q ss_pred CHhHHhhhH-HHHHHHHHH
Q 023059 146 NASQLITQR-ETVSREIRK 163 (288)
Q Consensus 146 ~~~ei~~~R-~~i~~~v~~ 163 (288)
++..++..| ..|...+.+
T Consensus 32 pi~~~l~~R~~~I~~~l~~ 50 (164)
T PRK14471 32 PILGAVKEREDSIKNALAS 50 (164)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 345555555 344444443
No 64
>PF01015 Ribosomal_S3Ae: Ribosomal S3Ae family; InterPro: IPR001593 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic and archaebacterial ribosomal proteins can be grouped on the basis of sequence similarities. One of these families consists of proteins that have from 220 to 250 amino acids and represents Rps1 (eukaryotic) and Rps3Ae (archaeal and eukaryotic).; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2XZN_4 2XZM_4 3U5C_B 3U5G_B.
Probab=51.12 E-value=72 Score=26.68 Aligned_cols=83 Identities=11% Similarity=0.173 Sum_probs=49.2
Q ss_pred eccccCCccEEEEEEEEEEecCCCCHHHHHHHhCccccccccchHHHHHHHHHHhhCCHhHHhhhHHHHHHHHHHHHHHH
Q 023059 89 STTGSHDLQMVKIGLRVLTRPVADQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTER 168 (288)
Q Consensus 89 ~~~~TkD~~~v~v~~~v~y~v~~~~~~~~~~~~g~~~~~~~l~~~v~~~lr~~i~~~~~~ei~~~R~~i~~~v~~~l~~~ 168 (288)
.++.|+||..+.+-....=. ... .. .....++....+.+.+.+++.+++|+...- +...+..++...
T Consensus 106 ~dvkT~DGy~lRvf~i~fT~-~ra---------~~-sq~~~IRk~m~~ii~~~~~~~~~~e~V~~l--i~~~i~~eI~k~ 172 (194)
T PF01015_consen 106 VDVKTKDGYLLRVFCIAFTK-KRA---------KS-SQIKAIRKKMVEIITEEASELDLKELVKKL--IPGSIGKEIEKA 172 (194)
T ss_dssp EEEEETTTEEEEEEEEEEE--------------TC-HHHHHHHHHHHHHHHHHCCTSHHHHHHHHH--CTTHHHHHHHHH
T ss_pred EEEEcCCCcEEEEEEEEEEe-ecc---------cc-hHHHHHHHHHHHHHHHHhccCcHHHHHHHH--ccchHHHHHHHH
Confidence 45789999988876544322 111 11 112337788888888899999999998632 344455555555
Q ss_pred HhcCCeEEEEEEeeccc
Q 023059 169 AAYFNIALDDVSITSLT 185 (288)
Q Consensus 169 l~~~Gi~v~~v~I~~i~ 185 (288)
+... +-+.+|.|+.+.
T Consensus 173 ~k~I-yPl~~v~IrKvK 188 (194)
T PF01015_consen 173 CKKI-YPLRNVEIRKVK 188 (194)
T ss_dssp HCTT---EEEEEEEEEE
T ss_pred hccc-cccceEEEEEEE
Confidence 5443 445566665543
No 65
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=50.91 E-value=97 Score=26.76 Aligned_cols=19 Identities=11% Similarity=0.228 Sum_probs=9.7
Q ss_pred CHhHHhhhH-HHHHHHHHHH
Q 023059 146 NASQLITQR-ETVSREIRKI 164 (288)
Q Consensus 146 ~~~ei~~~R-~~i~~~v~~~ 164 (288)
++..++..| ..|...+.+.
T Consensus 29 Pi~~~l~~R~~~I~~~l~~A 48 (246)
T TIGR03321 29 PILDAMDAREKKIAGELADA 48 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 455566555 4555555443
No 66
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=50.75 E-value=58 Score=30.78 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHH
Q 023059 208 KFIVEKAEQDKKGAIIRAQGEAT 230 (288)
Q Consensus 208 ~~~~~~A~ae~~a~~~~A~~ea~ 230 (288)
+.+.+.|++|++-.+.+|.+|++
T Consensus 206 ~tE~erae~EretiRvkA~Aeae 228 (630)
T KOG0742|consen 206 KTEMERAEAERETIRVKAKAEAE 228 (630)
T ss_pred HhHHHHHHHHHHHHHHHHHHhhh
Confidence 45566677776666666666665
No 67
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=50.52 E-value=1.2e+02 Score=24.11 Aligned_cols=17 Identities=18% Similarity=0.427 Sum_probs=8.4
Q ss_pred CHhHHhhhHH-HHHHHHH
Q 023059 146 NASQLITQRE-TVSREIR 162 (288)
Q Consensus 146 ~~~ei~~~R~-~i~~~v~ 162 (288)
++.+++..|. .|...+.
T Consensus 29 pi~~~l~~R~~~I~~~l~ 46 (159)
T PRK13461 29 KIKAVIDSRQSEIDNKIE 46 (159)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 4555665553 4444443
No 68
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=49.06 E-value=1.4e+02 Score=24.09 Aligned_cols=16 Identities=13% Similarity=0.285 Sum_probs=7.8
Q ss_pred CHhHHhhhHH-HHHHHH
Q 023059 146 NASQLITQRE-TVSREI 161 (288)
Q Consensus 146 ~~~ei~~~R~-~i~~~v 161 (288)
++.+++..|. .|.+.+
T Consensus 46 Pi~~~l~~R~~~I~~~l 62 (167)
T PRK08475 46 PLKNFYKSRINKISKRL 62 (167)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 4555555553 444444
No 69
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=48.90 E-value=1.6e+02 Score=24.71 Aligned_cols=15 Identities=27% Similarity=0.587 Sum_probs=6.9
Q ss_pred HhHHhhhH-HHHHHHH
Q 023059 147 ASQLITQR-ETVSREI 161 (288)
Q Consensus 147 ~~ei~~~R-~~i~~~v 161 (288)
+..++..| +.|.+.+
T Consensus 73 i~~~L~~R~~~I~~~L 88 (205)
T PRK06231 73 TQRFLNKRKELIEAEI 88 (205)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 44455544 3444444
No 70
>cd03406 Band_7_3 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=48.24 E-value=1.3e+02 Score=26.70 Aligned_cols=22 Identities=32% Similarity=0.623 Sum_probs=15.4
Q ss_pred cCchhhHHHHHHHHHHHHHHhcCCCCEEEE
Q 023059 241 KNPAFITLRKIEAAREIAQTISKSSNKVYL 270 (288)
Q Consensus 241 ~~p~~~~~~~le~~~~i~~~l~~~~~~i~l 270 (288)
.+|++++|+.++++-. |+++|+
T Consensus 258 ~~~~~~~~~~~~~~~~--------~~~~~~ 279 (280)
T cd03406 258 LTPEYLELMKYEAIAA--------NSKIYF 279 (280)
T ss_pred CCHHHHHHHHHHHHHh--------cCcccc
Confidence 4788888888876543 566665
No 71
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=47.64 E-value=1.6e+02 Score=24.17 Aligned_cols=20 Identities=30% Similarity=0.351 Sum_probs=11.1
Q ss_pred CCHhHHhhhH-HHHHHHHHHH
Q 023059 145 YNASQLITQR-ETVSREIRKI 164 (288)
Q Consensus 145 ~~~~ei~~~R-~~i~~~v~~~ 164 (288)
-++..++..| ..|...+.+.
T Consensus 47 kPI~~~l~~R~~~I~~~l~~A 67 (184)
T CHL00019 47 GVLSDLLDNRKQTILNTIRNS 67 (184)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 4566677665 4455554443
No 72
>PF09432 THP2: Tho complex subunit THP2; InterPro: IPR018557 The THO complex plays a role in coupling transcription elongation to mRNA export. It is composed of subunits THP2, HPR1, THO2 and MFT1 [].
Probab=46.97 E-value=1.3e+02 Score=23.22 Aligned_cols=37 Identities=11% Similarity=0.131 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhcCCeEEEEEEeecccCCHHHHHHHHH
Q 023059 160 EIRKILTERAAYFNIALDDVSITSLTFGKEFTFAIEA 196 (288)
Q Consensus 160 ~v~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~aie~ 196 (288)
++.-.|...++.-+=++..|.+.+-.||++++..+++
T Consensus 10 rLSvdL~~qve~sd~~~~~~~vd~~~pP~el~~iLe~ 46 (132)
T PF09432_consen 10 RLSVDLAKQVEISDPEVSEFVVDDWNPPKELQSILEK 46 (132)
T ss_pred HHHHHHHHHhcccCCCcceeeecCCCCCHHHHHHHHH
Confidence 3344444444544567888999999999999988854
No 73
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=46.82 E-value=1.6e+02 Score=23.93 Aligned_cols=16 Identities=19% Similarity=0.295 Sum_probs=7.6
Q ss_pred CHhHHhhhHH-HHHHHH
Q 023059 146 NASQLITQRE-TVSREI 161 (288)
Q Consensus 146 ~~~ei~~~R~-~i~~~v 161 (288)
++..++..|. .|...+
T Consensus 42 pi~~~l~~R~~~I~~~l 58 (175)
T PRK14472 42 PILSALEEREKGIQSSI 58 (175)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 3455555553 444443
No 74
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=41.63 E-value=1.9e+02 Score=23.44 Aligned_cols=17 Identities=24% Similarity=0.552 Sum_probs=8.5
Q ss_pred CHhHHhhhHH-HHHHHHH
Q 023059 146 NASQLITQRE-TVSREIR 162 (288)
Q Consensus 146 ~~~ei~~~R~-~i~~~v~ 162 (288)
++.+++..|. .|.+.+.
T Consensus 42 pi~~~l~~R~~~I~~~l~ 59 (173)
T PRK13453 42 PLKDVMDKRERDINRDID 59 (173)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 4556665553 4444443
No 75
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=40.97 E-value=1.4e+02 Score=24.42 Aligned_cols=17 Identities=18% Similarity=0.464 Sum_probs=9.1
Q ss_pred HhHHhhhH-HHHHHHHHH
Q 023059 147 ASQLITQR-ETVSREIRK 163 (288)
Q Consensus 147 ~~ei~~~R-~~i~~~v~~ 163 (288)
+..++..| +.|...+.+
T Consensus 52 v~~~L~~R~~~I~~~l~~ 69 (184)
T PRK13455 52 IGGMLDKRAEGIRSELEE 69 (184)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 46666655 345544443
No 76
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=39.79 E-value=1.6e+02 Score=23.15 Aligned_cols=8 Identities=13% Similarity=0.302 Sum_probs=3.9
Q ss_pred HhHHhhhH
Q 023059 147 ASQLITQR 154 (288)
Q Consensus 147 ~~ei~~~R 154 (288)
+..++..|
T Consensus 29 i~~~l~~R 36 (156)
T PRK05759 29 IMKALEER 36 (156)
T ss_pred HHHHHHHH
Confidence 44455444
No 77
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=39.55 E-value=1.9e+02 Score=22.91 Aligned_cols=8 Identities=13% Similarity=0.293 Sum_probs=4.0
Q ss_pred HhHHhhhH
Q 023059 147 ASQLITQR 154 (288)
Q Consensus 147 ~~ei~~~R 154 (288)
+..++..|
T Consensus 27 i~~~l~~R 34 (159)
T PRK09173 27 IARSLDAR 34 (159)
T ss_pred HHHHHHHH
Confidence 44555544
No 78
>cd03401 Band_7_prohibitin Band_7_prohibitin. A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup group includes proteins similar to prohibitin (a lipid raft-associated integral membrane protein). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. These microdomains in addition to being stable scaffolds may also be also dynamic units with their own regulatory functions. Prohibitin is a mitochondrial inner-membrane protein which may act as a chaperone for the stabilization of mitochondrial proteins. Human prohibitin forms a heter-oligomeric complex with Bap-37 (prohibitin 2, a band 7 domain carrying homologue). This complex may protect non-assembled membrane proteins against proteolysis by the m-AAA protease. Prohibitin and Bap-37 yeast homologues have been implicated in yeast longevity and, in the maintenance of mitochondrial morphology.
Probab=38.88 E-value=78 Score=25.91 Aligned_cols=20 Identities=20% Similarity=0.212 Sum_probs=13.3
Q ss_pred HHHHHhhhhhHHHHHHHHHH
Q 023059 219 KGAIIRAQGEATSAQLIGQA 238 (288)
Q Consensus 219 ~a~~~~A~~ea~a~~~~~~a 238 (288)
+.++.+|++||++..+.|++
T Consensus 172 ~~~~~~a~~ea~~~~~~A~g 191 (196)
T cd03401 172 KFVVEKAEQEKQAAVIRAEG 191 (196)
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 34566777777777766655
No 79
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=38.06 E-value=2.4e+02 Score=23.65 Aligned_cols=19 Identities=11% Similarity=0.429 Sum_probs=9.4
Q ss_pred CHhHHhhhH-HHHHHHHHHH
Q 023059 146 NASQLITQR-ETVSREIRKI 164 (288)
Q Consensus 146 ~~~ei~~~R-~~i~~~v~~~ 164 (288)
++..++..| +.|..++.+.
T Consensus 77 pI~~vLe~R~~~I~~~L~~A 96 (204)
T PRK09174 77 RIGGIIETRRDRIAQDLDQA 96 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 345556555 4555555443
No 80
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=38.01 E-value=2e+02 Score=22.77 Aligned_cols=15 Identities=7% Similarity=0.397 Sum_probs=6.8
Q ss_pred HhHHhhhHH-HHHHHH
Q 023059 147 ASQLITQRE-TVSREI 161 (288)
Q Consensus 147 ~~ei~~~R~-~i~~~v 161 (288)
+..++..|. .|...+
T Consensus 47 i~~~l~~R~~~I~~~l 62 (156)
T CHL00118 47 LLKVLDERKEYIRKNL 62 (156)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 444555553 344443
No 81
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=37.55 E-value=1.8e+02 Score=23.22 Aligned_cols=18 Identities=17% Similarity=0.429 Sum_probs=8.8
Q ss_pred CHhHHhhhHH-HHHHHHHH
Q 023059 146 NASQLITQRE-TVSREIRK 163 (288)
Q Consensus 146 ~~~ei~~~R~-~i~~~v~~ 163 (288)
++..++..|. .|...+.+
T Consensus 32 pi~~~l~~R~~~I~~~l~~ 50 (164)
T PRK14473 32 PVLNLLNERTRRIEESLRD 50 (164)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3555565553 44444433
No 82
>PRK02292 V-type ATP synthase subunit E; Provisional
Probab=36.39 E-value=67 Score=26.37 Aligned_cols=25 Identities=28% Similarity=0.393 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHH
Q 023059 211 VEKAEQDKKGAIIRAQGEATSAQLI 235 (288)
Q Consensus 211 ~~~A~ae~~a~~~~A~~ea~a~~~~ 235 (288)
.+.++++++++.+.++++.+|.++.
T Consensus 20 ~I~~ea~~~~~~i~~ea~~~a~~i~ 44 (188)
T PRK02292 20 EIRAEADEEAEEIIAEAEADAEEIL 44 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666665555544
No 83
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=36.34 E-value=3.4e+02 Score=25.81 Aligned_cols=17 Identities=24% Similarity=0.550 Sum_probs=8.2
Q ss_pred HhHHhhhH-HHHHHHHHH
Q 023059 147 ASQLITQR-ETVSREIRK 163 (288)
Q Consensus 147 ~~ei~~~R-~~i~~~v~~ 163 (288)
+..++..| +.|.+.+.+
T Consensus 26 i~~~l~~R~~~I~~~L~e 43 (445)
T PRK13428 26 VRRLMAARQDTVRQQLAE 43 (445)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 45555555 344444433
No 84
>PF11190 DUF2976: Protein of unknown function (DUF2976); InterPro: IPR021356 Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in a region flanked by markers of conjugative transfer and/or transposition.
Probab=36.33 E-value=17 Score=26.13 Aligned_cols=32 Identities=22% Similarity=0.189 Sum_probs=21.5
Q ss_pred CCCccCCCCCCCCchhHHHHHHHHHHHHHHHhh
Q 023059 3 FNNVKVPKMPGGGAVSALIKVGVIGGLGLYAAT 35 (288)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 35 (288)
|++.+-+|..+.. |+...+++++++++++|+.
T Consensus 50 y~eir~gK~~W~~-fg~~~vVGvvLlv~viwLl 81 (87)
T PF11190_consen 50 YNEIRDGKKTWGD-FGATVVVGVVLLVFVIWLL 81 (87)
T ss_pred HHHHHcCcccHHH-hhhHHHHHHHHHHHHHHHH
Confidence 4555667777776 6677777777777766654
No 85
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=35.86 E-value=2.3e+02 Score=22.84 Aligned_cols=16 Identities=6% Similarity=0.331 Sum_probs=8.2
Q ss_pred CHhHHhhhHH-HHHHHH
Q 023059 146 NASQLITQRE-TVSREI 161 (288)
Q Consensus 146 ~~~ei~~~R~-~i~~~v 161 (288)
++..++.+|. .|...+
T Consensus 43 pI~~~l~~R~~~I~~~l 59 (174)
T PRK07352 43 FLGKILEERREAILQAL 59 (174)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 3566666553 444444
No 86
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=34.95 E-value=2.1e+02 Score=22.01 Aligned_cols=8 Identities=13% Similarity=0.551 Sum_probs=4.1
Q ss_pred HhHHhhhH
Q 023059 147 ASQLITQR 154 (288)
Q Consensus 147 ~~ei~~~R 154 (288)
+.+++..|
T Consensus 30 i~~~l~~R 37 (140)
T PRK07353 30 VGKVVEER 37 (140)
T ss_pred HHHHHHHH
Confidence 45555544
No 87
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=34.69 E-value=2e+02 Score=23.53 Aligned_cols=10 Identities=10% Similarity=0.434 Sum_probs=5.4
Q ss_pred CHhHHhhhHH
Q 023059 146 NASQLITQRE 155 (288)
Q Consensus 146 ~~~ei~~~R~ 155 (288)
++..++..|.
T Consensus 55 PI~~~l~~R~ 64 (181)
T PRK13454 55 RIGAVLAERQ 64 (181)
T ss_pred HHHHHHHHHH
Confidence 4555665554
No 88
>PRK15322 invasion protein OrgB; Provisional
Probab=34.23 E-value=1.4e+02 Score=25.19 Aligned_cols=10 Identities=10% Similarity=-0.034 Sum_probs=6.0
Q ss_pred CCEEEEcCCc
Q 023059 265 SNKVYLNADD 274 (288)
Q Consensus 265 ~~~i~l~~~~ 274 (288)
.-.+++|++.
T Consensus 112 pL~l~lP~~a 121 (210)
T PRK15322 112 QLFLTLPVNA 121 (210)
T ss_pred ceeEecChhh
Confidence 3457777753
No 89
>PRK12613 galactose-6-phosphate isomerase subunit LacA; Provisional
Probab=34.01 E-value=34 Score=27.03 Aligned_cols=35 Identities=14% Similarity=0.135 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHhcCCeEEEEEEeecccCCHHHHHHH
Q 023059 159 REIRKILTERAAYFNIALDDVSITSLTFGKEFTFAI 194 (288)
Q Consensus 159 ~~v~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~ai 194 (288)
-++++.+.+.|.+.|.+|.|+.-.+.++|+ +...+
T Consensus 12 ~~lK~~l~~~L~~~g~eV~D~G~~~~dypd-~a~~v 46 (141)
T PRK12613 12 NALKELIKSFLQEEGYDIIDVTDINSDFID-NTLAV 46 (141)
T ss_pred HHHHHHHHHHHHHCCCEEEEcCCCCCChHH-HHHHH
Confidence 357788888888999999999876677776 44444
No 90
>COG1890 RPS1A Ribosomal protein S3AE [Translation, ribosomal structure and biogenesis]
Probab=33.30 E-value=2.9e+02 Score=23.43 Aligned_cols=71 Identities=11% Similarity=0.177 Sum_probs=45.0
Q ss_pred eeeeeccccCCccEEEEEEEEEEecCCCCHHHHHHHhCccccccccchHHHHHHHHHHhhCCHhHHhhhH--HHHHHHHH
Q 023059 85 NLVESTTGSHDLQMVKIGLRVLTRPVADQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQR--ETVSREIR 162 (288)
Q Consensus 85 ~~~~~~~~TkD~~~v~v~~~v~y~v~~~~~~~~~~~~g~~~~~~~l~~~v~~~lr~~i~~~~~~ei~~~R--~~i~~~v~ 162 (288)
++...++.|+||.-+.+.+.+.=+-+ + .....+-|+....+.+.+..+..+++++...- +.+..++.
T Consensus 104 Idai~dVkTkDGy~~RV~~~~~T~~r---a--------~tSqk~aIRk~M~eii~~~a~e~~f~~fv~~li~g~i~~~I~ 172 (214)
T COG1890 104 IDAIVDVKTKDGYVLRVKAMAFTRRR---A--------KTSQKRAIRKIMFEIIEEKASELTFEEFVQELIPGRIAAEIE 172 (214)
T ss_pred eeeEEEEEecCCcEEEEEEEEEEehh---c--------ccchHHHHHHHHHHHHHHHhccCCHHHHHHHHhhhhHHHHHH
Confidence 33345788999999998875543311 1 11222347788888888889999999998622 44444444
Q ss_pred HHHH
Q 023059 163 KILT 166 (288)
Q Consensus 163 ~~l~ 166 (288)
++-+
T Consensus 173 ~~ak 176 (214)
T COG1890 173 EAAK 176 (214)
T ss_pred HHhh
Confidence 4433
No 91
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=32.74 E-value=2.4e+02 Score=21.93 Aligned_cols=8 Identities=25% Similarity=0.368 Sum_probs=3.3
Q ss_pred HhHHhhhH
Q 023059 147 ASQLITQR 154 (288)
Q Consensus 147 ~~ei~~~R 154 (288)
+..++..|
T Consensus 20 i~~~l~~R 27 (147)
T TIGR01144 20 LAKAIETR 27 (147)
T ss_pred HHHHHHHH
Confidence 33444444
No 92
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=29.99 E-value=64 Score=22.94 Aligned_cols=10 Identities=10% Similarity=0.039 Sum_probs=5.2
Q ss_pred CCcceeeccc
Q 023059 62 PEGTHLMIPW 71 (288)
Q Consensus 62 ~pG~~~~~P~ 71 (288)
.|...|..|.
T Consensus 58 ~~~~~f~NPL 67 (85)
T PF10717_consen 58 NPQMGFTNPL 67 (85)
T ss_pred CCcccccccc
Confidence 4445565554
No 93
>KOG2007 consensus Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=29.06 E-value=3.1e+02 Score=26.62 Aligned_cols=9 Identities=22% Similarity=0.460 Sum_probs=4.2
Q ss_pred hcCCeEEEE
Q 023059 170 AYFNIALDD 178 (288)
Q Consensus 170 ~~~Gi~v~~ 178 (288)
..+|+.+.+
T Consensus 505 ~~~g~~led 513 (586)
T KOG2007|consen 505 LELGVRLED 513 (586)
T ss_pred HHhhhHHHh
Confidence 345554443
No 94
>KOG2620 consensus Prohibitins and stomatins of the PID superfamily [Energy production and conversion]
Probab=28.37 E-value=95 Score=27.29 Aligned_cols=154 Identities=16% Similarity=0.186 Sum_probs=75.9
Q ss_pred EEEecCCCCHHHHHHHhCccccccccchHHHHHHHHHHhhCCHhHHhhhHHHHHHHHHHHHHHH-HhcCCeEEEEEEeec
Q 023059 105 VLTRPVADQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTER-AAYFNIALDDVSITS 183 (288)
Q Consensus 105 v~y~v~~~~~~~~~~~~g~~~~~~~l~~~v~~~lr~~i~~~~~~ei~~~R~~i~~~v~~~l~~~-l~~~Gi~v~~v~I~~ 183 (288)
..|. .+++..-... +....+++.+-..-=...++|=-+--..+.+.+.+..... .+=.-.+|.|+.. +
T Consensus 88 AsYg--venp~~aI~q--------laqttmRsevgkltLD~vFeer~~ln~sI~eainkA~~~wG~~clr~eIrDI~p-p 156 (301)
T KOG2620|consen 88 ASYG--VENPEYAIQQ--------LAQTTMRSEVGKLTLDKVFEERNSLNKSIVEAINKAMEAWGYECLRYEIRDIEP-P 156 (301)
T ss_pred cccc--cCCHHHHHHH--------HHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhcCC-C
Confidence 5777 6888755552 2445666665443333333443333455666666666542 1222345566653 2
Q ss_pred ccCCHHHHHHH--HHHHHHHH---HHHHHHHHHHHHHHHHHHH-----------HHhhhhhHHHHHHHHHHhhcCc----
Q 023059 184 LTFGKEFTFAI--EAKQVAAQ---EAERAKFIVEKAEQDKKGA-----------IIRAQGEATSAQLIGQAIAKNP---- 243 (288)
Q Consensus 184 i~~p~~~~~ai--e~~~~a~q---~ae~a~~~~~~A~ae~~a~-----------~~~A~~ea~a~~~~~~al~~~p---- 243 (288)
-..-....... +++..|+- |+++. ..+..||.+++++ +..|.|+++|....+++-..+-
T Consensus 157 ~~V~~AM~~q~~AeR~krAailesEger~-~~InrAEGek~s~iL~seg~~~qr~n~a~Gea~ail~~A~a~a~~~a~~~ 235 (301)
T KOG2620|consen 157 PSVKRAMNMQNEAERMKRAAILESEGERI-AQINRAEGEKESKILASEGIARQRQNIADGEAEAILAFADAVAGTSAKLV 235 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhH-HhhhhhcchhhhHHhhhHHHHHHHHHHHhhHHHHHHHHhhcccchHHHHH
Confidence 34444443333 34443322 33321 2455666666555 4455555555555554421110
Q ss_pred -hh--------hH----HHHHHHHHHHHHHhcCCCCEEEEcCCc
Q 023059 244 -AF--------IT----LRKIEAAREIAQTISKSSNKVYLNADD 274 (288)
Q Consensus 244 -~~--------~~----~~~le~~~~i~~~l~~~~~~i~l~~~~ 274 (288)
.+ .+ .+++-+..+ |++.+|++++|.+.
T Consensus 236 ~~l~~~~g~~aasl~~a~qyIgaf~~----lak~sntv~lP~~p 275 (301)
T KOG2620|consen 236 MDLKQEGGVEAASLFDAEQYIGAFGK----LAKKSNTVFLPHGP 275 (301)
T ss_pred HHHHHhcchhhHHHHHHHHHHHhhhh----hcccCceEEecCCC
Confidence 01 11 234443333 34668999999874
No 95
>TIGR02499 HrpE_YscL_not type III secretion apparatus protein, HrpE/YscL family. This model is related to Pfam model pfam06188, but is broader. pfam06188 describes HrpE-like proteins, components of bacterial type III secretion systems primarily in bacteria that infect plants. This model includes also the homologous proteins of animal pathogens, such as YscL of Yersinia pestis. This model excludes the related protein FliH of the bacterial flagellar apparatus (see pfam02108)
Probab=27.98 E-value=2e+02 Score=22.71 Aligned_cols=8 Identities=0% Similarity=0.131 Sum_probs=3.9
Q ss_pred CEEEEcCC
Q 023059 266 NKVYLNAD 273 (288)
Q Consensus 266 ~~i~l~~~ 273 (288)
-+|.++|+
T Consensus 116 v~I~v~P~ 123 (166)
T TIGR02499 116 LTLRVHPE 123 (166)
T ss_pred eEEEECHH
Confidence 34555554
No 96
>PRK09098 type III secretion system protein HrpB; Validated
Probab=27.88 E-value=1.3e+02 Score=25.86 Aligned_cols=7 Identities=14% Similarity=0.226 Sum_probs=3.8
Q ss_pred EEEEcCC
Q 023059 267 KVYLNAD 273 (288)
Q Consensus 267 ~i~l~~~ 273 (288)
+|.++|+
T Consensus 154 ~IrV~P~ 160 (233)
T PRK09098 154 TVRVHPA 160 (233)
T ss_pred EEEECHH
Confidence 4555654
No 97
>PRK09738 small toxic polypeptide; Provisional
Probab=27.16 E-value=1.8e+02 Score=18.77 Aligned_cols=40 Identities=18% Similarity=0.185 Sum_probs=20.1
Q ss_pred ccCCCCCCCCchhHHHHHHHHHHHHHHHh---hccEEEecCCeEEEE
Q 023059 6 VKVPKMPGGGAVSALIKVGVIGGLGLYAA---THSLYNVEGGHRAIM 49 (288)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~~~~V~~g~~gVv 49 (288)
|+||...... .++++ .+.++.+.|+ .-|-..+..|+.-|.
T Consensus 1 mkmp~~~~~~---~livv-CiTvL~f~~l~r~sLCEl~i~~g~~eva 43 (52)
T PRK09738 1 MKLPRSPLVW---CVLIV-CLTLLIFTYLTRKSLCELRYRDGDREVA 43 (52)
T ss_pred CCCccceehh---hHHHH-HHHHHHHHHHccCCceEEEEecCCEEEE
Confidence 5677665443 33333 3333333333 344567777776554
No 98
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=26.93 E-value=3.4e+02 Score=21.84 Aligned_cols=17 Identities=18% Similarity=0.464 Sum_probs=7.3
Q ss_pred HhHHhhhH-HHHHHHHHH
Q 023059 147 ASQLITQR-ETVSREIRK 163 (288)
Q Consensus 147 ~~ei~~~R-~~i~~~v~~ 163 (288)
+..++..| +.|..++.+
T Consensus 35 I~~iLe~R~~~I~~~L~~ 52 (155)
T PRK06569 35 AEEIFNNRQTNIQDNITQ 52 (155)
T ss_pred HHHHHHHHHHHHHhHHHH
Confidence 34444444 344444433
No 99
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=26.65 E-value=3.4e+02 Score=21.75 Aligned_cols=16 Identities=6% Similarity=0.318 Sum_probs=6.9
Q ss_pred CHhHHhhhH-HHHHHHH
Q 023059 146 NASQLITQR-ETVSREI 161 (288)
Q Consensus 146 ~~~ei~~~R-~~i~~~v 161 (288)
++..++..| ..|.+++
T Consensus 30 pi~~~l~~R~~~I~~~l 46 (161)
T COG0711 30 PILKALDERQAKIADDL 46 (161)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 344444444 3444444
No 100
>TIGR03745 conj_TIGR03745 integrating conjugative element membrane protein, PFL_4702 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in a region flanked by markers of conjugative transfer and/or transposition.
Probab=25.75 E-value=18 Score=26.91 Aligned_cols=32 Identities=19% Similarity=0.205 Sum_probs=21.5
Q ss_pred CCCccCCCCCCCCchhHHHHHHHHHHHHHHHhh
Q 023059 3 FNNVKVPKMPGGGAVSALIKVGVIGGLGLYAAT 35 (288)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 35 (288)
|++.+-+|..|.. |+...+++++++++.+|+.
T Consensus 66 y~Ei~~Gk~~W~~-fg~~v~VGviLLv~vIwLl 97 (104)
T TIGR03745 66 YHEIRTGKATWGD-FGATVVVGAILLVVIIWLL 97 (104)
T ss_pred HHHHHcchhhHHh-CcchhhhHhHHHHHHHHHH
Confidence 4556667777765 6677777777777666654
No 101
>TIGR01120 rpiB ribose 5-phosphate isomerase B. Involved in the non-oxidative branch of the pentose phospate pathway.
Probab=24.66 E-value=65 Score=25.51 Aligned_cols=30 Identities=3% Similarity=-0.028 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHhcCCeEEEEEEe---ecccCCH
Q 023059 159 REIRKILTERAAYFNIALDDVSI---TSLTFGK 188 (288)
Q Consensus 159 ~~v~~~l~~~l~~~Gi~v~~v~I---~~i~~p~ 188 (288)
-++++.|.+.|++.|.+|.++.- ..+++|+
T Consensus 11 ~~lK~~l~~~L~~~g~eV~D~G~~~~~~~dYpd 43 (143)
T TIGR01120 11 FILKEEIKAFLVERGVKVIDKGTWSSERTDYPH 43 (143)
T ss_pred HHHHHHHHHHHHHCCCEEEEeCCCCCCCCCHHH
Confidence 36788888889999999999876 3455554
No 102
>PF08621 RPAP1_N: RPAP1-like, N-terminal; InterPro: IPR013930 Inhibition of RNA polymerase II-associated protein 1 (RPAP1) synthesis in Saccharomyces cerevisiae (Baker's yeast) results in changes in global gene expression that are similar to those caused by the loss of the RNAPII subunit Rpb11 []. This entry represents the N-terminal region of RPAP-1 that is conserved from yeast to humans.
Probab=22.26 E-value=1.3e+02 Score=19.04 Aligned_cols=32 Identities=19% Similarity=0.195 Sum_probs=24.3
Q ss_pred HHHHHhhCCHhHHhhhHHHHHHHHHHHHHHHH
Q 023059 138 LKAVVAQYNASQLITQRETVSREIRKILTERA 169 (288)
Q Consensus 138 lr~~i~~~~~~ei~~~R~~i~~~v~~~l~~~l 169 (288)
=...+++|+.+||...|.+|...+--.+=+.|
T Consensus 8 N~~rL~~MS~eEI~~er~eL~~~LdP~li~~L 39 (49)
T PF08621_consen 8 NEARLASMSPEEIEEEREELLESLDPKLIEFL 39 (49)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 34678899999999999888877655554444
No 103
>PF06188 HrpE: HrpE/YscL/FliH and V-type ATPase subunit E; InterPro: IPR009335 This family consists of several bacterial HrpE proteins, which are believed to function on the type III secretion system, specifically the secretion of HrpZ (harpinPss) []. This family also includes V-type proton ATPase subunit E proteins. This subunit appears to form a tight interaction with subunit G in the F0 complex. Subunits E and G may act together as stators to prevent certain subunits from rotating with the central rotary element []. PF01991 from PFAM also contains V-type ATPase subunit E proteins. There is an evolutionary link between type III secretion systems and membrane-associated proton translocating ATPases [].
Probab=21.95 E-value=4.6e+02 Score=21.68 Aligned_cols=17 Identities=24% Similarity=0.405 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 023059 207 AKFIVEKAEQDKKGAII 223 (288)
Q Consensus 207 a~~~~~~A~ae~~a~~~ 223 (288)
|+..+..|+.++++-+.
T Consensus 43 A~~Il~~Ae~eAe~l~~ 59 (191)
T PF06188_consen 43 AEQILQQAEEEAEALLE 59 (191)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344455554444444
No 104
>PF02502 LacAB_rpiB: Ribose/Galactose Isomerase; InterPro: IPR003500 This entry represents the sugar isomerase enzymes ribose 5-phosphate isomerase B (rpiB), galactose isomerase subunit A (LacA) and galactose isomerase subunit B (LacB). Galactose-6-phosphate isomerase (5.3.1.26 from EC) is a heteromultimeric protein consisting of subunits LacA and LacB, and catalyses the conversion of D-galactose 6-phosphate to D-tagatose and 6-phosphate in the tagatose 6-phosphate pathway of lactose catabolism []. Galactose-6-phosphate isomerase is induced by galactose or lactose. This entry represents the LacB subunit. Ribose 5-phosphate isomerase (5.3.1.6 from EC) forms a homodimer and catalyses the interconversion of D-ribose 5-phosphate and D-ribulose 5-phosphate in the non-oxidative branch of the pentose phosphate pathway. This reaction permits the synthesis of ribose from other sugars, as well as the recycling of sugars from nucleotide breakdown. Two unrelated enzymes can catalyse this reaction: RpiA (found in most organisms) and RpiB (found in some bacteria and eukaryotes). RpiB is also involved in metabolism of the rare sugar, allose, in addition to ribose sugars. The structures of RpiA and RpiB are distinct, RpiB having a Rossmann-type alpha/beta/alpha sandwich topology [].; GO: 0005975 carbohydrate metabolic process; PDB: 3HEE_A 3HE8_A 3PH3_B 3PH4_B 3ONO_A 4EM8_B 3S5P_B 1O1X_A 2BES_D 2VVP_D ....
Probab=21.32 E-value=76 Score=25.00 Aligned_cols=26 Identities=15% Similarity=0.089 Sum_probs=21.7
Q ss_pred HHHHHHHHHHhcCCeEEEEEEeeccc
Q 023059 160 EIRKILTERAAYFNIALDDVSITSLT 185 (288)
Q Consensus 160 ~v~~~l~~~l~~~Gi~v~~v~I~~i~ 185 (288)
++++.+.+.|+++|.+|.++...+-+
T Consensus 12 ~lK~~i~~~L~~~g~eV~D~G~~~~~ 37 (140)
T PF02502_consen 12 ELKEAIKEYLEEKGYEVIDFGTYSED 37 (140)
T ss_dssp HHHHHHHHHHHHTTEEEEEESESSTS
T ss_pred HHHHHHHHHHHHCCCEEEEeCCCCCC
Confidence 57778888888889999999988744
No 105
>KOG4737 consensus ATPase membrane sector associated protein [Energy production and conversion]
Probab=21.23 E-value=1.3e+02 Score=26.52 Aligned_cols=38 Identities=18% Similarity=0.286 Sum_probs=29.8
Q ss_pred hhHHHHHHHHHHHHHHHhhccEEEecCCeEEEEEeeecc
Q 023059 17 VSALIKVGVIGGLGLYAATHSLYNVEGGHRAIMFNRIVG 55 (288)
Q Consensus 17 ~~~~~~~~v~~~~~~~~~~~~~~~V~~g~~gVv~~~~G~ 55 (288)
|-.++++.+++++.+++..-.....+||.--+++ |...
T Consensus 283 Fni~Lw~mvil~lali~i~y~ia~mDPg~DSIIY-RMTt 320 (326)
T KOG4737|consen 283 FNIFLWLMVILVLALIYIVYGIASMDPGKDSIIY-RMTT 320 (326)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhccCCCcceeEE-Eecc
Confidence 4456777777777778777778889999999998 7643
No 106
>PF06188 HrpE: HrpE/YscL/FliH and V-type ATPase subunit E; InterPro: IPR009335 This family consists of several bacterial HrpE proteins, which are believed to function on the type III secretion system, specifically the secretion of HrpZ (harpinPss) []. This family also includes V-type proton ATPase subunit E proteins. This subunit appears to form a tight interaction with subunit G in the F0 complex. Subunits E and G may act together as stators to prevent certain subunits from rotating with the central rotary element []. PF01991 from PFAM also contains V-type ATPase subunit E proteins. There is an evolutionary link between type III secretion systems and membrane-associated proton translocating ATPases [].
Probab=21.05 E-value=4.8e+02 Score=21.59 Aligned_cols=11 Identities=18% Similarity=0.247 Sum_probs=6.3
Q ss_pred CCCCEEEEcCC
Q 023059 263 KSSNKVYLNAD 273 (288)
Q Consensus 263 ~~~~~i~l~~~ 273 (288)
.+.-++++.|+
T Consensus 130 ~~~~tL~~hP~ 140 (191)
T PF06188_consen 130 ESEATLRCHPD 140 (191)
T ss_pred ccceEEEECHH
Confidence 34456666665
No 107
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=20.93 E-value=5.8e+02 Score=22.49 Aligned_cols=37 Identities=22% Similarity=0.293 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHhhc-CchhhH
Q 023059 211 VEKAEQDKKGAIIRAQGEATSAQLIGQAIAK-NPAFIT 247 (288)
Q Consensus 211 ~~~A~ae~~a~~~~A~~ea~a~~~~~~al~~-~p~~~~ 247 (288)
+..-++.-++++.+-+.|-+.++..-++|.. -|.++.
T Consensus 188 l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmd 225 (267)
T PF10234_consen 188 LASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMD 225 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHH
Confidence 4444555567777777777777766666533 455554
No 108
>TIGR00689 rpiB_lacA_lacB sugar-phosphate isomerases, RpiB/LacA/LacB family. Proteins of known function in this family act as sugar (pentose and/or hexose)-phosphate isomerases, including the LacA and LacB subunits of galactose-6-phosphate isomerases from Gram-positive bacteria and RpiB. RpiB is the second ribose phosphate isomerase of E. coli. It lacks homology to RpiA, its inducer is unknown (but is not ribose), and it can be replaced by the homologous galactose-6-phosphate isomerase of Streptococcus mutans, all of which suggests that the ribose phosphate isomerase activity of RpiB is a secondary function. On the other hand, there appear to be a significant number of species which contain rpiB, lack rpiA and seem to require rpi activity in order to copplete the pentose phosphate pathway.
Probab=20.89 E-value=82 Score=24.99 Aligned_cols=35 Identities=9% Similarity=0.141 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHhcCCeEEEEEEe---ecccCCHHHHHHH
Q 023059 159 REIRKILTERAAYFNIALDDVSI---TSLTFGKEFTFAI 194 (288)
Q Consensus 159 ~~v~~~l~~~l~~~Gi~v~~v~I---~~i~~p~~~~~ai 194 (288)
-.+++.|.+.|++.|.+|.++.- ..+++|+ +...+
T Consensus 10 ~~lK~~l~~~L~~~g~eV~D~G~~~~~~~dYpd-~a~~v 47 (144)
T TIGR00689 10 LELKSEIIEHLKQKGHEVIDCGTLYDERVDYPD-YAKLV 47 (144)
T ss_pred HHHHHHHHHHHHHCCCEEEEcCCCCCCCCChHH-HHHHH
Confidence 35788888889999999999976 3455554 44333
No 109
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=20.51 E-value=5.1e+02 Score=21.66 Aligned_cols=8 Identities=38% Similarity=0.281 Sum_probs=2.9
Q ss_pred hccEEEec
Q 023059 35 THSLYNVE 42 (288)
Q Consensus 35 ~~~~~~V~ 42 (288)
.+|-..|+
T Consensus 26 ~~~~~~~~ 33 (205)
T PRK06231 26 VSCTENVE 33 (205)
T ss_pred HHccCChh
Confidence 34433333
No 110
>KOG4753 consensus Predicted membrane protein [Function unknown]
Probab=20.33 E-value=2e+02 Score=22.01 Aligned_cols=34 Identities=9% Similarity=0.170 Sum_probs=15.1
Q ss_pred HHHHhhccEEEecCCeEEEEEeeeccccceeeCCcce
Q 023059 30 GLYAATHSLYNVEGGHRAIMFNRIVGVKDKVYPEGTH 66 (288)
Q Consensus 30 ~~~~~~~~~~~V~~g~~gVv~~~~G~~~~~~~~pG~~ 66 (288)
+.+++......-..+-.|+++ -.=|.. ..-||.|
T Consensus 67 lg~fl~~~~~~ag~~~~gv~f-~V~G~L--~FiPGfY 100 (124)
T KOG4753|consen 67 LGFFLAGGRVEAGDRSQGVFF-FVLGIL--LFIPGFY 100 (124)
T ss_pred HHHHheecceeeCCCcceEEE-ehhhhH--hcccchh
Confidence 333444444443555555555 223322 3455544
No 111
>PLN03094 Substrate binding subunit of ER-derived-lipid transporter; Provisional
Probab=20.19 E-value=3.3e+02 Score=25.25 Aligned_cols=6 Identities=17% Similarity=0.163 Sum_probs=3.0
Q ss_pred CccCCC
Q 023059 5 NVKVPK 10 (288)
Q Consensus 5 ~~~~~~ 10 (288)
+++|+.
T Consensus 75 ~~~~~r 80 (370)
T PLN03094 75 DFGFGK 80 (370)
T ss_pred hcCCcc
Confidence 445555
Done!