Query 023059
Match_columns 288
No_of_seqs 183 out of 1410
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 15:40:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023059.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023059hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bk6_A PH stomatin; archaea, t 100.0 1.8E-29 6.1E-34 210.0 14.9 171 71-259 2-176 (188)
2 4fvg_A Stomatin; mixed alpha-b 99.9 7.7E-24 2.6E-28 166.0 11.0 128 67-198 3-131 (133)
3 1win_A Flotillin 2; BAND 7 dom 99.8 2E-21 6.9E-26 154.1 5.6 129 71-199 3-137 (143)
4 2rpb_A Hypothetical membrane p 99.7 1.8E-18 6.2E-23 131.6 4.2 110 76-189 3-113 (113)
5 2zuo_A MVP, major vault protei 98.4 1.3E-05 4.6E-10 77.5 19.1 149 38-188 459-647 (861)
6 2kk7_A V-type ATP synthase sub 73.2 7 0.00024 24.2 4.7 20 218-237 21-40 (52)
7 3v6i_A V-type ATP synthase sub 44.4 26 0.0009 27.6 4.5 9 265-273 117-125 (187)
8 2b5u_A Colicin E3; high resolu 42.8 1E+02 0.0034 28.4 8.3 34 171-204 277-310 (551)
9 2k6i_A Uncharacterized protein 40.8 36 0.0012 21.4 3.7 19 211-229 32-50 (56)
10 2xzm_4 40S ribosomal protein S 38.8 1.7E+02 0.0059 24.5 9.5 89 89-183 128-220 (265)
11 3j20_A 30S ribosomal protein S 36.2 1.7E+02 0.0057 23.5 10.2 69 89-168 107-177 (198)
12 2k6i_A Uncharacterized protein 36.0 56 0.0019 20.5 4.0 25 213-239 23-47 (56)
13 2acm_B Mucin-1; auto-catalytic 31.5 43 0.0015 20.9 2.9 21 169-189 32-52 (55)
14 2zuo_A MVP, major vault protei 31.1 1.9E+02 0.0066 28.5 8.7 13 38-50 486-498 (861)
15 4efa_E V-type proton ATPase su 30.3 1.9E+02 0.0065 23.4 7.8 7 188-194 11-17 (233)
16 3bk6_A PH stomatin; archaea, t 27.0 1.5E+02 0.0052 22.9 6.4 64 156-227 88-152 (188)
17 4efa_G V-type proton ATPase su 24.1 1.6E+02 0.0055 21.4 5.5 14 210-223 36-49 (119)
18 2kk7_A V-type ATP synthase sub 21.9 1.4E+02 0.0049 18.1 5.6 23 211-233 25-47 (52)
19 4efa_G V-type proton ATPase su 21.2 2.4E+02 0.0082 20.4 7.1 22 210-231 25-46 (119)
No 1
>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii}
Probab=99.96 E-value=1.8e-29 Score=209.97 Aligned_cols=171 Identities=22% Similarity=0.349 Sum_probs=147.5
Q ss_pred cccceEEEeeeeeeeeeee-ccccCCccEEEEEEEEEEecCCCCHHHHHHHhCccccccccchHHHHHHHHHHhhCCHhH
Q 023059 71 WFERPVIYDVRARPNLVES-TTGSHDLQMVKIGLRVLTRPVADQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQ 149 (288)
Q Consensus 71 ~~~~v~~~~~~~~~~~~~~-~~~TkD~~~v~v~~~v~y~v~~~~~~~~~~~~g~~~~~~~l~~~v~~~lr~~i~~~~~~e 149 (288)
|++++.++|+|.++++++. .+.|+||+++.+++++.||| .++..++.++ .++.+ .+.+.+++.+|+++|+++++|
T Consensus 2 fi~~v~~vd~r~~~~~v~~~~v~TkD~~~V~v~~~v~yrI--~dp~~~~~~v-~~~~~-~i~~~~~~~lR~vig~~~l~e 77 (188)
T 3bk6_A 2 IFEKAVIVDLRTQVLDVPVQETITKDNVPVRVNAVVYFRV--VDPVKAVTQV-KNYIM-ATSQISQTTLRSVIGQAHLDE 77 (188)
T ss_dssp CEEECCCCCSSCEEEEEEEEEEECTTSCEEEEEEEEEEEE--SCHHHHHHSS-SCHHH-HHHHHHHHHHHHHHHTSCHHH
T ss_pred ceEEEEEEeeeEEEEecCCceeEcCCCCEEEEEEEEEEEE--CCHHHHHHHh-cCHHH-HHHHHHHHHHHHHHccCCHHH
Confidence 5689999999999999976 78999999999999999995 6677777654 35544 478999999999999999999
Q ss_pred HhhhHHHHHHHHHHHHHHHHhcCCeEEEEEEeecccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 023059 150 LITQRETVSREIRKILTERAAYFNIALDDVSITSLTFGKEFTFAIEAKQVAAQEAERAKFIVEKAEQDKKGAIIRAQGEA 229 (288)
Q Consensus 150 i~~~R~~i~~~v~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~aie~~~~a~q~ae~a~~~~~~A~ae~~a~~~~A~~ea 229 (288)
++++|++|++.+++.+++.+++|||+|++|.|++|+||+++.++|++++ .|++++++++++|+|++
T Consensus 78 ll~~R~~i~~~i~~~l~~~~~~~GI~v~~v~I~~i~~p~ev~~a~~~~~--------------~Aere~~A~i~~Aege~ 143 (188)
T 3bk6_A 78 LLSERDKLNMQLQRIIDEATDPWGIKVTAVEIKDVELPAGMQKAMARQA--------------EAERERRARITLAEAER 143 (188)
T ss_dssp HHHCHHHHHHHHHHHHHHHTGGGTEEEEEEEEEEEEEETTHHHHHHHHH--------------HHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHhcCeEEEEEEEEecCCCHHHHHHHHHHH--------------HHHHHHHHHHHHhHHHH
Confidence 9999999999999999999999999999999999999999999997543 26677888999999999
Q ss_pred HHHHHHHHHh---hcCchhhHHHHHHHHHHHHH
Q 023059 230 TSAQLIGQAI---AKNPAFITLRKIEAAREIAQ 259 (288)
Q Consensus 230 ~a~~~~~~al---~~~p~~~~~~~le~~~~i~~ 259 (288)
+|++++++|. ..+|.++++|+||++.+++.
T Consensus 144 ~a~~~~a~a~~~~~~~~~~l~lr~le~~~~ia~ 176 (188)
T 3bk6_A 144 QAAEKLREAAEIISEHPMALQLRTLQTISDVAG 176 (188)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHHHTTC------
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHhc
Confidence 9999999884 56999999999999999876
No 2
>4fvg_A Stomatin; mixed alpha-beta fold, membrane scaffold, membrane protein; 1.80A {Mus musculus} PDB: 4fvj_A 4fvf_A
Probab=99.90 E-value=7.7e-24 Score=166.04 Aligned_cols=128 Identities=16% Similarity=0.224 Sum_probs=100.1
Q ss_pred eecccccceEEEeeeeeeeeeee-ccccCCccEEEEEEEEEEecCCCCHHHHHHHhCccccccccchHHHHHHHHHHhhC
Q 023059 67 LMIPWFERPVIYDVRARPNLVES-TTGSHDLQMVKIGLRVLTRPVADQLPTIYRTLGENYNERVLPSIIHETLKAVVAQY 145 (288)
Q Consensus 67 ~~~P~~~~v~~~~~~~~~~~~~~-~~~TkD~~~v~v~~~v~y~v~~~~~~~~~~~~g~~~~~~~l~~~v~~~lr~~i~~~ 145 (288)
+..||++++.++|+|.+.++++. ++.|+|+..+.++++++|| +.|+.+++.++ +..+..+...+++++|+++|++
T Consensus 3 l~~P~id~v~~vd~R~~~~d~~~q~vlT~D~~~v~Vd~~v~yr--I~Dp~~~~~~v--~~~~~~l~~~~~~~lR~vig~~ 78 (133)
T 4fvg_A 3 LGSPSTDSAAKVDMRTISFDIPPQEVLTKDSVTISVDGVVYYR--VQNATLAVANI--TNADSATRLLAQTTLRNALGTK 78 (133)
T ss_dssp -----------CCCSCEEEEEEEEEEECTTCCEEEEEEEEEEE--ESCHHHHHHSS--SCHHHHHHHHHHHHHHHHHHTS
T ss_pred CCCCceeEEEEEEeEEEEecCCCeEEEeCCCCEEEEEEEEEEE--EeehHHhHhhh--hhHHHHHHHHHHHHHHHHhccc
Confidence 67899999999999999999976 6999999999999999999 57888887754 3344558999999999999999
Q ss_pred CHhHHhhhHHHHHHHHHHHHHHHHhcCCeEEEEEEeecccCCHHHHHHHHHHH
Q 023059 146 NASQLITQRETVSREIRKILTERAAYFNIALDDVSITSLTFGKEFTFAIEAKQ 198 (288)
Q Consensus 146 ~~~ei~~~R~~i~~~v~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~aie~~~ 198 (288)
++++++++|++|.+.+++.+++.+++|||+|.+|.|++++||+++.++|++++
T Consensus 79 ~ldeil~~r~~i~~~i~~~l~~~~~~~GI~V~~V~ikdi~~P~~v~~am~~~~ 131 (133)
T 4fvg_A 79 NLSQILSDREEIAHHMQSTLDDATDDWGIKVERVEIKDVKLPVQLQRAMAAEA 131 (133)
T ss_dssp CHHHHHHCHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEECCCC---------
T ss_pred cHHHHHhhHHHHHHHHHHHHHHHHhcCCEEEEEEEEEecCCCHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999996554
No 3
>1win_A Flotillin 2; BAND 7 domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, cell adhesion; NMR {Mus musculus} SCOP: d.43.2.1
Probab=99.83 E-value=2e-21 Score=154.11 Aligned_cols=129 Identities=8% Similarity=0.096 Sum_probs=111.3
Q ss_pred cccceEEEeeeeeeeeeee-ccccCCccEEEEEEEEEEecC--CCCHHHHHHHh-C--ccccccccchHHHHHHHHHHhh
Q 023059 71 WFERPVIYDVRARPNLVES-TTGSHDLQMVKIGLRVLTRPV--ADQLPTIYRTL-G--ENYNERVLPSIIHETLKAVVAQ 144 (288)
Q Consensus 71 ~~~~v~~~~~~~~~~~~~~-~~~TkD~~~v~v~~~v~y~v~--~~~~~~~~~~~-g--~~~~~~~l~~~v~~~lr~~i~~ 144 (288)
|++++.++|+|.++++++. ++.|+|+.++.+|++++|||. |..+.....++ + .+..+..+.+.+++.+|+++|+
T Consensus 3 ~i~~v~~vdlr~~~ldv~~q~viTkD~v~v~Vdavv~~rI~dd~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~LR~viG~ 82 (143)
T 1win_A 3 SGSSGQRISLEIMTLQPRCEDVETAEGVALTVTGVAQVKIMTEKELLAVACEQFLGKNVQDIKNVVLQTLEGHLRSILGT 82 (143)
T ss_dssp CCCCCCSCCCSCEEECCCEEEEECSSSCEEEECCEEEEEECCCSSCCHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cceEEEEEECceEEEeCCcceeEcCCCCEEEEEEEEEEEECCCHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhc
Confidence 5689999999999999987 589999999999999999983 33333334443 2 2345566889999999999999
Q ss_pred CCHhHHhhhHHHHHHHHHHHHHHHHhcCCeEEEEEEeecccCCHHHHHHHHHHHH
Q 023059 145 YNASQLITQRETVSREIRKILTERAAYFNIALDDVSITSLTFGKEFTFAIEAKQV 199 (288)
Q Consensus 145 ~~~~ei~~~R~~i~~~v~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~aie~~~~ 199 (288)
++++|++++|++|.+.+++.++..+++|||+|.+|.|+||++|+++.++|++++.
T Consensus 83 ~tldeils~R~~i~~~v~~~~~~~~~~~Gi~V~~v~IkdI~~p~~~~~am~~~~~ 137 (143)
T 1win_A 83 LTVEQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTIKDVYDKVDYLSSLGKTQT 137 (143)
T ss_dssp SCHHHHHHTHHHHHHHHHHHHHHHHTTTTEEEEEEECCCEECTTCHHHHHCCCCC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEeecChHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999975543
No 4
>2rpb_A Hypothetical membrane protein; SPFH domain; NMR {Pyrococcus horikoshii}
Probab=99.72 E-value=1.8e-18 Score=131.61 Aligned_cols=110 Identities=13% Similarity=0.188 Sum_probs=98.2
Q ss_pred EEEeeeeeeeeeee-ccccCCccEEEEEEEEEEecCCCCHHHHHHHhCccccccccchHHHHHHHHHHhhCCHhHHhhhH
Q 023059 76 VIYDVRARPNLVES-TTGSHDLQMVKIGLRVLTRPVADQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQR 154 (288)
Q Consensus 76 ~~~~~~~~~~~~~~-~~~TkD~~~v~v~~~v~y~v~~~~~~~~~~~~g~~~~~~~l~~~v~~~lr~~i~~~~~~ei~~~R 154 (288)
+++|+|.+.++++. .+.|+|+.++.+++++.||| .++..++.+++ ++. ..+.+.+++++|+++|+++++|++++|
T Consensus 3 ~~vd~r~~~~~~~~~~v~T~D~~~v~v~~~v~~rI--~dp~~~~~~v~-~~~-~~l~~~~~~~lR~vig~~~l~ei~~~R 78 (113)
T 2rpb_A 3 DHVDLREHVIDVPPQEVICKDNVVVTVDAVVYYQV--IDPVKAVYNVS-DFL-MAIVKLAQTNLRAIIGEMELDETLSGR 78 (113)
T ss_dssp SCCCCCCEEEECCCEEEECTTSCEEEECEEEEEEE--SCTTTCTTTTT-HHH-HHHHHHHHHHHHHHHTSCCTTHHHHCH
T ss_pred eEEeeeEEEEecCcceeEeCCCCEEEEEEEEEEEE--CCHHHHHHhcC-CHH-HHHHHHHHHHHHHHHhcCcHHHHHhCH
Confidence 35789999999876 79999999999999999995 56777776654 443 458999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEEeecccCCHH
Q 023059 155 ETVSREIRKILTERAAYFNIALDDVSITSLTFGKE 189 (288)
Q Consensus 155 ~~i~~~v~~~l~~~l~~~Gi~v~~v~I~~i~~p~~ 189 (288)
++|++.+++.+++.+++|||+|.+|.|++++||++
T Consensus 79 ~~i~~~i~~~l~~~~~~~Gi~v~~v~I~~i~~p~e 113 (113)
T 2rpb_A 79 DIINARLREELDKITDRWGVKITRVEIQRIDPPKD 113 (113)
T ss_dssp HHHHHHHHHHHHHHHGGGTEECCCEEECCCBCCCC
T ss_pred HHHHHHHHHHHHHHHHhcCeEEEEEEEEEecCCCC
Confidence 99999999999999999999999999999999974
No 5
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=98.45 E-value=1.3e-05 Score=77.54 Aligned_cols=149 Identities=10% Similarity=0.048 Sum_probs=98.7
Q ss_pred EEEecCCeEEEEEeeeccccceeeCCcceeecccccceEEEeeee------e---e---------eeeeeccccCCccEE
Q 023059 38 LYNVEGGHRAIMFNRIVGVKDKVYPEGTHLMIPWFERPVIYDVRA------R---P---------NLVESTTGSHDLQMV 99 (288)
Q Consensus 38 ~~~V~~g~~gVv~~~~G~~~~~~~~pG~~~~~P~~~~v~~~~~~~------~---~---------~~~~~~~~TkD~~~v 99 (288)
.+.||.+...-+++--.+..+.+.+|-+++.-|- +.+..+++.- . . ..-...+-|+|...+
T Consensus 459 ~~rvphnaaVqvyDy~~~~~RvvfGP~lv~L~Pd-E~ftvlsLSgg~PK~~~~i~sl~L~lGPdf~tD~i~vET~DhArL 537 (861)
T 2zuo_A 459 SYRVPHNAAVQVYDYRAKRARVVFGPELVTLDPE-EQFTVLSLSAGRPKRPHARRALCLLLGPDFFTDVITIETADHARL 537 (861)
T ss_dssp EEECCTTEEEEEECSSSCCEEEECSSCEEECCSS-CEECCEEECCSSSCCTTSEEESSEECSSCEEEEEEEEECTTCCEE
T ss_pred EEEcCCCeEEEEEecCCCceEEEECCcEEEECCC-ccEEEEEecCCCCCCCCceEEEEeeeCCccceEEEEEEEcCceEE
Confidence 4578888877777511233556788988887775 4444444321 1 1 111135789999999
Q ss_pred EEEEEEEEecCC---CCHHHHHHHhC-ccccccccchHHHHHHHHHHhhCCHhHHhhhHHHHHHH-HHH-----------
Q 023059 100 KIGLRVLTRPVA---DQLPTIYRTLG-ENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSRE-IRK----------- 163 (288)
Q Consensus 100 ~v~~~v~y~v~~---~~~~~~~~~~g-~~~~~~~l~~~v~~~lr~~i~~~~~~ei~~~R~~i~~~-v~~----------- 163 (288)
.+..+..|..+. .++.+.-.-|. +|+... +=..+.|-+|..+++.++++++.+-..|-.. +..
T Consensus 538 ~L~LsYnW~F~~~d~~~~~~~~k~Fsv~DFvGd-~Ck~iaSriR~aVA~~~Fd~FHknsa~iir~aVFg~~~~~~~~~~~ 616 (861)
T 2zuo_A 538 QLQLAYNWHFELKNRNDPAEAAKLFSVPDFVGD-ACKAIASRVRGAVASVTFDDFHKNSARIIRMAVFGFEMSEDTGPDG 616 (861)
T ss_dssp EEEEEEEEEECCTTTTCHHHHHGGGSSSSHHHH-HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHSSCCC---------
T ss_pred EEEEEEEEEEeccCCCChhhhhhhccCCchHHH-HHHHHHHHHHHHhhcCcHHHHhhhHHHHHHHhhcCCCccccccccc
Confidence 999999998744 44444433333 566654 5788999999999999999999765555322 211
Q ss_pred ----HHHH--HHhcCCeEEEEEEeecccCCH
Q 023059 164 ----ILTE--RAAYFNIALDDVSITSLTFGK 188 (288)
Q Consensus 164 ----~l~~--~l~~~Gi~v~~v~I~~i~~p~ 188 (288)
..++ .+...|+.|++|.|+++.+-+
T Consensus 617 ~~~~~~~~~~~F~~N~lvitsVDvqsvEpvD 647 (861)
T 2zuo_A 617 TLLPKARDQAVFPQNGLVVSSVDVQSVEPVD 647 (861)
T ss_dssp ----CCCSCEECTTTCEEEEEEEEEEEEESS
T ss_pred ccccCcccceEEccCCeEEEEEeeeeecccC
Confidence 1111 256889999999999999865
No 6
>2kk7_A V-type ATP synthase subunit E; A1AO ATP synthase, ATP synthesis, hydrogen ION transport, ION transport, transport, hydrolase; NMR {Methanocaldococcus jannaschii}
Probab=73.18 E-value=7 Score=24.25 Aligned_cols=20 Identities=20% Similarity=0.335 Sum_probs=8.0
Q ss_pred HHHHHHhhhhhHHHHHHHHH
Q 023059 218 KKGAIIRAQGEATSAQLIGQ 237 (288)
Q Consensus 218 ~~a~~~~A~~ea~a~~~~~~ 237 (288)
.++..+.++++++|.+++.+
T Consensus 21 ~eA~~Il~eA~~eA~~Ii~e 40 (52)
T 2kk7_A 21 AEANKIISEAEAEKAKILEK 40 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444433
No 7
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J
Probab=44.36 E-value=26 Score=27.60 Aligned_cols=9 Identities=11% Similarity=0.290 Sum_probs=4.5
Q ss_pred CCEEEEcCC
Q 023059 265 SNKVYLNAD 273 (288)
Q Consensus 265 ~~~i~l~~~ 273 (288)
+..+++++.
T Consensus 117 ~~~vv~~~~ 125 (187)
T 3v6i_A 117 AKALVANPE 125 (187)
T ss_dssp CCEEEECTT
T ss_pred CCeEEECHH
Confidence 444555553
No 8
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=42.79 E-value=1e+02 Score=28.42 Aligned_cols=34 Identities=12% Similarity=-0.056 Sum_probs=28.4
Q ss_pred cCCeEEEEEEeecccCCHHHHHHHHHHHHHHHHH
Q 023059 171 YFNIALDDVSITSLTFGKEFTFAIEAKQVAAQEA 204 (288)
Q Consensus 171 ~~Gi~v~~v~I~~i~~p~~~~~aie~~~~a~q~a 204 (288)
.-|++-.-|.+.+|-.|.++.+..|+...++|+.
T Consensus 277 ~Sg~ePlYISvs~ilt~~elkqrqeee~r~~qew 310 (551)
T 2b5u_A 277 DSGHNAVYVSVSDVLSPDQVKQRQDEENRRQQEW 310 (551)
T ss_dssp GGCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCceEEEEeecCCHHHHHHHHHHHHHHHHHh
Confidence 4588888999999999999999888777777765
No 9
>2k6i_A Uncharacterized protein MJ0223; H subunit, A1AO ATP synthase, V1VO ATPase, F1FO ATP synthase, structural protein; NMR {Methanocaldococcus jannaschii}
Probab=40.78 E-value=36 Score=21.39 Aligned_cols=19 Identities=26% Similarity=0.249 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHhhhhhH
Q 023059 211 VEKAEQDKKGAIIRAQGEA 229 (288)
Q Consensus 211 ~~~A~ae~~a~~~~A~~ea 229 (288)
+..|+.+++..+..|+.+|
T Consensus 32 VeeA~~ea~~ii~eAreeA 50 (56)
T 2k6i_A 32 IEEAKNRAEQIKAEAIEEA 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444443333
No 10
>2xzm_4 40S ribosomal protein S3A; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_4
Probab=38.78 E-value=1.7e+02 Score=24.47 Aligned_cols=89 Identities=10% Similarity=0.211 Sum_probs=52.7
Q ss_pred eccccCCccEEEEEEEEEEecCC---CCHHH-HHHHhCccccccccchHHHHHHHHHHhhCCHhHHhhhHHHHHHHHHHH
Q 023059 89 STTGSHDLQMVKIGLRVLTRPVA---DQLPT-IYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKI 164 (288)
Q Consensus 89 ~~~~TkD~~~v~v~~~v~y~v~~---~~~~~-~~~~~g~~~~~~~l~~~v~~~lr~~i~~~~~~ei~~~R~~i~~~v~~~ 164 (288)
.++.|+||..+.+-....-.-++ ..... .|. .....+.|+....+.+...++..++.|+...- +...+..+
T Consensus 128 vdVkT~DGY~lRvf~i~fT~kr~~~~~q~kkt~Ya---~~SQir~IRkkm~eii~~~~~~~dl~e~V~kl--i~~~i~ke 202 (265)
T 2xzm_4 128 VDCKTNDGYIIRVFTLAFTKKTSAGKQSSTSTCYA---KSSQVRAIRRKINTFITNEAAKLGIAEFSKNL--IGEDYTKK 202 (265)
T ss_dssp EEEEETTTEEEEEEEEEEECCCSSCCSCSSCCBCC---THHHHHHHHHHHHHHHHHHHHTCCHHHHHHHH--HTTHHHHH
T ss_pred EEEEeCCCcEEEEEEEEEEecccccccccceeeec---cccchHHHHHHHHHHHHHHhhhCCHHHHHHHH--ccchHHHH
Confidence 46889999999887654433222 11110 011 11112346778888888889999999999632 44455555
Q ss_pred HHHHHhcCCeEEEEEEeec
Q 023059 165 LTERAAYFNIALDDVSITS 183 (288)
Q Consensus 165 l~~~l~~~Gi~v~~v~I~~ 183 (288)
+...+... +-+.+|.|+.
T Consensus 203 I~k~~k~I-yPL~~V~IrK 220 (265)
T 2xzm_4 203 IEKETKNI-FPLQNITIRK 220 (265)
T ss_dssp HHHHHTTT-CCEEEEEEEE
T ss_pred HHHHhhhc-cccceEEEEE
Confidence 55555543 4555666665
No 11
>3j20_A 30S ribosomal protein S3AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=36.17 E-value=1.7e+02 Score=23.46 Aligned_cols=69 Identities=13% Similarity=0.141 Sum_probs=47.1
Q ss_pred eccccCCccEEEEEEEEEEecCCCCHHHHHHHhCccccccccchHHHHHHHHHHhhCCHhHHhhhH--HHHHHHHHHHHH
Q 023059 89 STTGSHDLQMVKIGLRVLTRPVADQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQR--ETVSREIRKILT 166 (288)
Q Consensus 89 ~~~~TkD~~~v~v~~~v~y~v~~~~~~~~~~~~g~~~~~~~l~~~v~~~lr~~i~~~~~~ei~~~R--~~i~~~v~~~l~ 166 (288)
.++.|+||..+.+-....-.- .. . ......|+....+.+...+++.++.|+...- +.+..++..+.+
T Consensus 107 vdVkT~DGy~lRvf~i~fT~k-ra---------~-~sQ~~~IRk~m~eii~~~~~~~~l~e~V~~li~~~i~~eI~k~~k 175 (198)
T 3j20_A 107 FNITTKDGYKLRVMAMAIAMR-RI---------Q-TSQERAIRKIMQEIIYKKAEELNFKDFVLESVNGKIAAEIAKEAK 175 (198)
T ss_dssp EEEECTTSCEEEEEEEEEECS-SC---------C-CTHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHSHHHHHHHHHHHH
T ss_pred EEEEecCCCEEEEEEEEEEec-cc---------c-chhhhHHHHHHHHHHHHHhccCCHHHHHHHHcCChHHHHHHHhhC
Confidence 468899999998876544321 11 1 1112236777888888899999999999744 677777777665
Q ss_pred HH
Q 023059 167 ER 168 (288)
Q Consensus 167 ~~ 168 (288)
.-
T Consensus 176 ~I 177 (198)
T 3j20_A 176 KI 177 (198)
T ss_dssp HH
T ss_pred cc
Confidence 54
No 12
>2k6i_A Uncharacterized protein MJ0223; H subunit, A1AO ATP synthase, V1VO ATPase, F1FO ATP synthase, structural protein; NMR {Methanocaldococcus jannaschii}
Probab=36.05 E-value=56 Score=20.48 Aligned_cols=25 Identities=24% Similarity=0.312 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHh
Q 023059 213 KAEQDKKGAIIRAQGEATSAQLIGQAI 239 (288)
Q Consensus 213 ~A~ae~~a~~~~A~~ea~a~~~~~~al 239 (288)
.|+.+++..+ ++|+.++.+++.+|-
T Consensus 23 eAE~~A~~iV--eeA~~ea~~ii~eAr 47 (56)
T 2k6i_A 23 LAEEQAVKEI--EEAKNRAEQIKAEAI 47 (56)
T ss_dssp HHHHHHHHHH--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 3444444444 444444555555553
No 13
>2acm_B Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=31.55 E-value=43 Score=20.89 Aligned_cols=21 Identities=29% Similarity=0.586 Sum_probs=14.3
Q ss_pred HhcCCeEEEEEEeecccCCHH
Q 023059 169 AAYFNIALDDVSITSLTFGKE 189 (288)
Q Consensus 169 l~~~Gi~v~~v~I~~i~~p~~ 189 (288)
...|.+.|.+|.++|+.+|.+
T Consensus 32 ~~~YnL~IS~vsV~dv~FPsS 52 (55)
T 2acm_B 32 ASRYNLTISDVSVSDVPFPFS 52 (55)
T ss_dssp HHHHCCCEEEEEEECC-----
T ss_pred cccccceecceeEEeccCCCc
Confidence 348999999999999999965
No 14
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=31.08 E-value=1.9e+02 Score=28.46 Aligned_cols=13 Identities=8% Similarity=0.209 Sum_probs=7.0
Q ss_pred EEEecCCeEEEEE
Q 023059 38 LYNVEGGHRAIMF 50 (288)
Q Consensus 38 ~~~V~~g~~gVv~ 50 (288)
.+..+|.+.-.+.
T Consensus 486 lv~L~PdE~ftvl 498 (861)
T 2zuo_A 486 LVTLDPEEQFTVL 498 (861)
T ss_dssp EEECCSSCEECCE
T ss_pred EEEECCCccEEEE
Confidence 3455556655554
No 15
>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A
Probab=30.29 E-value=1.9e+02 Score=23.36 Aligned_cols=7 Identities=0% Similarity=0.069 Sum_probs=3.2
Q ss_pred HHHHHHH
Q 023059 188 KEFTFAI 194 (288)
Q Consensus 188 ~~~~~ai 194 (288)
+++.+.+
T Consensus 11 ~~v~~~i 17 (233)
T 4efa_E 11 NQVNDEL 17 (233)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3444444
No 16
>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii}
Probab=27.02 E-value=1.5e+02 Score=22.90 Aligned_cols=64 Identities=16% Similarity=0.179 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHH-HHhcCCeEEEEEEeecccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 023059 156 TVSREIRKILTE-RAAYFNIALDDVSITSLTFGKEFTFAIEAKQVAAQEAERAKFIVEKAEQDKKGAIIRAQG 227 (288)
Q Consensus 156 ~i~~~v~~~l~~-~l~~~Gi~v~~v~I~~i~~p~~~~~aie~~~~a~q~ae~a~~~~~~A~ae~~a~~~~A~~ 227 (288)
++.+.+.+.+.. -+.=..+.|.++...+ .+-+.+.+.+++.+.++. .+..|++++++..+.|++
T Consensus 88 ~i~~~l~~~~~~~GI~v~~v~I~~i~~p~-ev~~a~~~~~~Aere~~A-------~i~~Aege~~a~~~~a~a 152 (188)
T 3bk6_A 88 QLQRIIDEATDPWGIKVTAVEIKDVELPA-GMQKAMARQAEAERERRA-------RITLAEAERQAAEKLREA 152 (188)
T ss_dssp HHHHHHHHHTGGGTEEEEEEEEEEEEEET-THHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCeEEEEEEEEecCCCH-HHHHHHHHHHHHHHHHHH-------HHHHhHHHHHHHHHHHHH
Confidence 445555555543 2345578899999875 677888888877654322 355677777776665554
No 17
>4efa_G V-type proton ATPase subunit G; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_K 2k88_A 2kwy_A
Probab=24.14 E-value=1.6e+02 Score=21.43 Aligned_cols=14 Identities=21% Similarity=0.216 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHH
Q 023059 210 IVEKAEQDKKGAII 223 (288)
Q Consensus 210 ~~~~A~ae~~a~~~ 223 (288)
.+.+|+.++++++.
T Consensus 36 rLKqAK~EA~~EIe 49 (119)
T 4efa_G 36 KLKQAKTDAAKEID 49 (119)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 35555555555443
No 18
>2kk7_A V-type ATP synthase subunit E; A1AO ATP synthase, ATP synthesis, hydrogen ION transport, ION transport, transport, hydrolase; NMR {Methanocaldococcus jannaschii}
Probab=21.93 E-value=1.4e+02 Score=18.09 Aligned_cols=23 Identities=13% Similarity=0.121 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHH
Q 023059 211 VEKAEQDKKGAIIRAQGEATSAQ 233 (288)
Q Consensus 211 ~~~A~ae~~a~~~~A~~ea~a~~ 233 (288)
...++|++++..+.++++.+|.+
T Consensus 25 ~Il~eA~~eA~~Ii~eA~~~Ae~ 47 (52)
T 2kk7_A 25 KIISEAEAEKAKILEKAKEEAEK 47 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666555544
No 19
>4efa_G V-type proton ATPase subunit G; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_K 2k88_A 2kwy_A
Probab=21.22 E-value=2.4e+02 Score=20.45 Aligned_cols=22 Identities=27% Similarity=0.410 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHhhhhhHHH
Q 023059 210 IVEKAEQDKKGAIIRAQGEATS 231 (288)
Q Consensus 210 ~~~~A~ae~~a~~~~A~~ea~a 231 (288)
.+..|+..+..++-.|+.||++
T Consensus 25 iV~~ARk~k~~rLKqAK~EA~~ 46 (119)
T 4efa_G 25 IVSKARKYRQDKLKQAKTDAAK 46 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4666777777777777766654
Done!