BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 023060
         (288 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9QZC8|ABHD1_MOUSE Abhydrolase domain-containing protein 1 OS=Mus musculus GN=Abhd1
           PE=2 SV=2
          Length = 412

 Score = 35.0 bits (79), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 6/84 (7%)

Query: 152 KPIVIRFSNSTLSDGMVSKARCAIFSSNGTLHLGEITLANVCFSQDQGHFSIVVPLKRKR 211
           +P ++   N  L DG     R  +F++ G      +T    C S  +   ++V  +KR+ 
Sbjct: 145 EPYILHLVNQALKDGY----RAVVFNNRGCRGEELLTHRAYCASNTEDLETVVKHIKRRY 200

Query: 212 GQWKLWAIGIVLGIGGFILIGYVV 235
            Q  L A+GI    GG +++ Y+ 
Sbjct: 201 SQAPLLAVGI--SFGGILVLNYLA 222


>sp|Q8GT74|NIP2_ARATH NEP1-interacting protein 2 OS=Arabidopsis thaliana GN=NIP2 PE=1
           SV=1
          Length = 241

 Score = 32.3 bits (72), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 5/37 (13%)

Query: 22  NNNT-----TDSLDTCLQDFAFRTLIRHRPHTGNLYN 53
           NNNT     TDS   CLQDF     +R  PH  ++++
Sbjct: 184 NNNTDASENTDSCSVCLQDFQLGETVRSLPHCHHMFH 220


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.325    0.137    0.424 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 105,729,672
Number of Sequences: 539616
Number of extensions: 4169349
Number of successful extensions: 11290
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 11290
Number of HSP's gapped (non-prelim): 3
length of query: 288
length of database: 191,569,459
effective HSP length: 116
effective length of query: 172
effective length of database: 128,974,003
effective search space: 22183528516
effective search space used: 22183528516
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 61 (28.1 bits)