Query 023060
Match_columns 288
No_of_seqs 64 out of 66
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 08:09:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023060.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023060hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06697 DUF1191: Protein of u 100.0 7E-113 2E-117 792.7 27.6 261 19-280 3-278 (278)
2 PF15102 TMEM154: TMEM154 prot 84.5 0.45 9.7E-06 41.8 1.1 58 221-285 61-118 (146)
3 PF04478 Mid2: Mid2 like cell 84.1 0.32 6.9E-06 43.1 -0.0 19 215-233 48-66 (154)
4 PF12273 RCR: Chitin synthesis 83.7 1.2 2.5E-05 37.3 3.2 19 226-244 9-27 (130)
5 PF01102 Glycophorin_A: Glycop 82.0 0.68 1.5E-05 39.4 1.2 23 220-244 72-94 (122)
6 PF02480 Herpes_gE: Alphaherpe 81.7 1.6 3.4E-05 44.1 3.9 38 94-134 141-178 (439)
7 PF06697 DUF1191: Protein of u 81.6 1.5 3.3E-05 42.1 3.5 44 213-256 207-251 (278)
8 PF12768 Rax2: Cortical protei 78.1 2.7 5.8E-05 40.1 3.9 53 209-262 222-278 (281)
9 PF02009 Rifin_STEVOR: Rifin/s 76.6 1.9 4.1E-05 41.7 2.5 32 218-249 258-289 (299)
10 PF04995 CcmD: Heme exporter p 74.8 6.5 0.00014 27.7 4.2 29 225-253 13-42 (46)
11 PF07271 Cytadhesin_P30: Cytad 69.3 4.3 9.2E-05 39.1 3.0 35 219-253 73-109 (279)
12 KOG4289 Cadherin EGF LAG seven 68.4 20 0.00044 42.0 8.2 112 128-243 2071-2194(2531)
13 PTZ00046 rifin; Provisional 67.5 3.4 7.4E-05 41.1 2.0 36 214-249 313-348 (358)
14 TIGR01477 RIFIN variant surfac 66.4 3.8 8.2E-05 40.7 2.0 32 218-249 312-343 (353)
15 TIGR03141 cytochro_ccmD heme e 66.0 13 0.00028 26.1 4.2 9 244-252 34-42 (45)
16 PF15048 OSTbeta: Organic solu 65.1 3.2 6.9E-05 35.7 1.1 41 229-269 47-88 (125)
17 KOG3637 Vitronectin receptor, 64.0 3.1 6.6E-05 46.3 1.0 39 216-256 979-1021(1030)
18 PF06305 DUF1049: Protein of u 63.7 9.7 0.00021 27.8 3.3 11 244-254 54-64 (68)
19 smart00218 ZU5 Domain present 57.4 22 0.00048 29.5 4.7 73 70-161 11-85 (104)
20 PF08374 Protocadherin: Protoc 57.1 9.5 0.00021 35.7 2.8 24 215-238 36-60 (221)
21 PF15330 SIT: SHP2-interacting 56.6 5.4 0.00012 33.1 1.0 30 221-250 5-34 (107)
22 PF02529 PetG: Cytochrome B6-F 56.5 7.5 0.00016 27.0 1.5 28 220-247 8-35 (37)
23 PHA01080 hypothetical protein 54.8 20 0.00042 28.8 3.8 67 171-244 2-76 (80)
24 PF05545 FixQ: Cbb3-type cytoc 53.1 22 0.00047 25.1 3.5 24 234-257 25-48 (49)
25 CHL00008 petG cytochrome b6/f 50.4 15 0.00032 25.6 2.1 29 219-247 7-35 (37)
26 KOG3603 Predicted phospholipas 50.1 6.6 0.00014 40.1 0.6 77 28-116 313-406 (456)
27 PHA03265 envelope glycoprotein 49.2 16 0.00035 36.7 3.1 22 222-243 355-376 (402)
28 PF09926 DUF2158: Uncharacteri 47.0 32 0.00069 25.3 3.7 37 144-181 6-42 (53)
29 PRK00665 petG cytochrome b6-f 45.4 18 0.0004 25.1 2.0 28 219-246 7-34 (37)
30 PF15345 TMEM51: Transmembrane 45.0 36 0.00079 32.2 4.6 17 215-232 56-73 (233)
31 PHA03283 envelope glycoprotein 44.4 50 0.0011 34.7 5.8 29 214-242 396-426 (542)
32 PF12273 RCR: Chitin synthesis 44.3 18 0.00039 30.2 2.3 21 229-249 9-29 (130)
33 PF13908 Shisa: Wnt and FGF in 41.3 12 0.00026 32.7 0.8 13 172-184 5-17 (179)
34 PF10883 DUF2681: Protein of u 37.6 59 0.0013 26.4 4.2 20 231-250 15-35 (87)
35 PF04689 S1FA: DNA binding pro 36.8 81 0.0018 24.6 4.6 21 218-238 16-36 (69)
36 PF15099 PIRT: Phosphoinositid 36.4 32 0.00069 29.9 2.6 31 219-249 83-115 (129)
37 PF15050 SCIMP: SCIMP protein 36.0 22 0.00047 30.8 1.6 27 216-242 8-34 (133)
38 PF06006 DUF905: Bacterial pro 36.0 32 0.0007 27.0 2.3 31 190-220 21-52 (70)
39 PF01825 GPS: Latrophilin/CL-1 35.8 79 0.0017 21.6 4.1 36 170-205 2-44 (44)
40 COG3216 Uncharacterized protei 35.7 50 0.0011 30.3 3.9 75 181-255 86-182 (184)
41 TIGR03546 conserved hypothetic 35.6 50 0.0011 29.1 3.8 33 221-253 114-146 (154)
42 PF06305 DUF1049: Protein of u 35.4 59 0.0013 23.6 3.6 10 248-257 55-64 (68)
43 PF12904 Collagen_bind_2: Puta 35.2 2.3E+02 0.005 22.9 7.3 47 150-208 33-80 (93)
44 PF00974 Rhabdo_glycop: Rhabdo 34.9 13 0.00028 38.2 0.0 25 65-89 326-350 (501)
45 PF06103 DUF948: Bacterial pro 34.0 68 0.0015 24.8 4.0 32 223-254 6-42 (90)
46 PF08693 SKG6: Transmembrane a 33.2 39 0.00084 23.8 2.2 15 212-226 7-22 (40)
47 PF14143 YrhC: YrhC-like prote 32.8 45 0.00098 26.2 2.7 20 232-251 52-72 (72)
48 PF15330 SIT: SHP2-interacting 32.0 44 0.00095 27.8 2.7 34 222-255 3-36 (107)
49 PF00791 ZU5: ZU5 domain; Int 31.4 59 0.0013 26.3 3.3 62 84-162 24-86 (103)
50 PF01788 PsbJ: PsbJ; InterPro 30.3 20 0.00044 25.3 0.4 22 215-236 9-30 (40)
51 PF12597 DUF3767: Protein of u 30.2 84 0.0018 26.5 4.1 15 238-252 86-100 (118)
52 PF11166 DUF2951: Protein of u 30.2 11 0.00023 31.3 -1.2 24 211-234 69-92 (98)
53 KOG1631 Translocon-associated 30.2 22 0.00047 33.9 0.7 26 242-267 211-236 (261)
54 PF07204 Orthoreo_P10: Orthore 29.4 47 0.001 27.6 2.4 31 222-252 48-79 (98)
55 PF04995 CcmD: Heme exporter p 29.1 1.2E+02 0.0026 21.2 4.1 37 221-257 6-43 (46)
56 PF07006 DUF1310: Protein of u 28.6 24 0.00053 30.0 0.7 23 238-260 20-42 (122)
57 CHL00108 psbJ photosystem II p 28.6 18 0.00039 25.6 -0.1 23 213-235 7-29 (40)
58 PRK04778 septation ring format 27.5 68 0.0015 33.2 3.8 37 219-255 3-39 (569)
59 COG4890 Predicted outer membra 27.2 1E+02 0.0022 21.4 3.3 29 230-258 7-35 (37)
60 PF14584 DUF4446: Protein of u 26.9 87 0.0019 27.4 3.8 22 225-246 9-30 (151)
61 PRK02565 photosystem II reacti 25.9 23 0.00049 25.0 -0.0 23 213-235 6-28 (39)
62 PF04478 Mid2: Mid2 like cell 25.1 40 0.00087 30.1 1.4 33 212-245 49-81 (154)
63 PRK10489 enterobactin exporter 23.6 40 0.00086 31.7 1.2 21 236-256 396-416 (417)
64 PF11669 WBP-1: WW domain-bind 23.1 1.5E+02 0.0033 24.2 4.4 21 240-260 42-62 (102)
65 PF15103 G0-G1_switch_2: G0/G1 23.1 64 0.0014 27.1 2.1 26 207-233 17-42 (102)
66 PF05620 DUF788: Protein of un 23.0 41 0.00089 29.5 1.1 16 241-256 155-170 (170)
67 PF12868 DUF3824: Domain of un 22.7 1.1E+02 0.0025 26.5 3.7 10 249-258 38-47 (137)
68 smart00019 SF_P Pulmonary surf 22.4 2.1E+02 0.0045 26.0 5.3 65 188-255 11-76 (191)
69 PF07172 GRP: Glycine rich pro 22.3 1.1E+02 0.0024 24.9 3.3 19 248-266 29-47 (95)
70 PF06160 EzrA: Septation ring 22.3 1.1E+02 0.0023 31.9 4.0 33 222-254 2-34 (560)
71 PTZ00382 Variant-specific surf 22.3 43 0.00093 27.2 1.0 27 213-239 63-91 (96)
72 PF00558 Vpu: Vpu protein; In 22.2 89 0.0019 25.1 2.7 11 239-249 31-41 (81)
73 PF05454 DAG1: Dystroglycan (D 22.1 30 0.00064 33.6 0.0 40 210-249 138-180 (290)
74 PF11044 TMEMspv1-c74-12: Plec 22.0 47 0.001 24.2 1.0 24 231-254 21-46 (49)
75 PRK10697 DNA-binding transcrip 21.8 65 0.0014 27.4 2.0 14 226-239 49-62 (118)
76 PRK11677 hypothetical protein; 21.7 34 0.00074 29.6 0.3 9 230-238 15-23 (134)
77 PF02158 Neuregulin: Neureguli 21.7 31 0.00066 35.0 0.0 37 225-261 16-55 (404)
78 KOG1273 WD40 repeat protein [G 21.6 2.2E+02 0.0049 28.7 5.8 74 109-187 86-172 (405)
79 PF01034 Syndecan: Syndecan do 21.3 30 0.00065 26.7 -0.1 7 238-244 33-39 (64)
No 1
>PF06697 DUF1191: Protein of unknown function (DUF1191); InterPro: IPR010605 This family contains hypothetical plant proteins of unknown function.
Probab=100.00 E-value=7.1e-113 Score=792.72 Aligned_cols=261 Identities=48% Similarity=0.798 Sum_probs=245.2
Q ss_pred cccCCCChhhHHHHHHHHHHHhhhcCCCCCCceEeeccCCCCCCceEEEEEEecccccccCC-ccceeecCCCccccCcc
Q 023060 19 HSLNNNTTDSLDTCLQDFAFRTLIRHRPHTGNLYNAMLPANLSGMSVSIVRLRSRRLWNRGA-NFCNFHIPSRTIPVPHV 97 (288)
Q Consensus 19 ~~~~~~~~~~LD~~lqd~A~k~l~~~r~~TG~~y~~~LP~NlSGi~vsavRlRsgSLrr~G~-~~~eF~IP~gv~~~P~v 97 (288)
++++.+++++||++|||||||+|+ +|||||++|+++||+||||||||+||||||||||||+ +|+||+||||++++||+
T Consensus 3 ~~~~~~~~~~LD~~lqd~A~kal~-~~p~TG~~y~~~LP~nlsGi~vsavRlRsgSLrr~G~~~~~eF~IP~gv~~~P~v 81 (278)
T PF06697_consen 3 QSQQIYSARSLDALLQDYAFKALV-LRPRTGILYNVSLPSNLSGIEVSAVRLRSGSLRRRGVNNFSEFHIPPGVVVQPYV 81 (278)
T ss_pred cccccCCHHHHHHHHHHHHHHHhc-cccccCceeeeecCCcccceEEEEEEeecCchhhhcccccceeecCCcceecCcc
Confidence 355667999999999999999997 4677999999999999999999999999999999999 99999999999999999
Q ss_pred eEEEEEEeecCCcccccccCCCceeeceeeEEEeeccCCcccCCcceeEEEecCCCeEEEcCCCccCCCCC-CcceeEEE
Q 023060 98 KRLALVYHDFGNWSSHYYTVPGYSMITPVIGFKVFDASNMMSRSVKKLSLNTMGKPIVIRFSNSTLSDGMV-SKARCAIF 176 (288)
Q Consensus 98 ~Rl~lVyqnlGNwSs~yY~~pgY~lvsPVlGllaYdasnl~~~~~~~l~l~~~g~PI~I~F~~~~~~~~~~-~~~~Cv~F 176 (288)
|||+||||||||||++||++|||+|+|||||||||||+|+++++++||+|+++|+||+|+|+|++..++++ +.+|||+|
T Consensus 82 ~Rl~lVyqnlGNwSs~yy~lpGY~lvsPVlGllaYdasn~~~~~~~el~l~a~~~PI~V~F~~~~~~~~~~~~~~~Cv~F 161 (278)
T PF06697_consen 82 ERLVLVYQNLGNWSSHYYPLPGYSLVSPVLGLLAYDASNLSATSLPELSLRASGKPILVDFSNVSPAPQPGMSVPKCVTF 161 (278)
T ss_pred eEEEEEEeccCccccceecCCCceEEeeeeeeEEecccccccCCcceeeeeccCCcEEEEecCCccCCCcccccceEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999998866 88899999
Q ss_pred ccCCceEEcccccCceeEeecCCeeEEEEeCC-------------CCCCceEEEEeehhhHHHHHHHHHHHHHHhhhhhh
Q 023060 177 SSNGTLHLGEITLANVCFSQDQGHFSIVVPLK-------------RKRGQWKLWAIGIVLGIGGFILIGYVVIASVKVLK 243 (288)
Q Consensus 177 ~~~G~~~~~~~~~~nvC~~~~~GHfslVV~~~-------------~~~~~wk~wvig~v~G~~glvlL~~lv~~~vr~~r 243 (288)
|+||+++|+|++++|||++++||||||||+.+ +++.+||+|++|+++|+++|+||++++++++|+||
T Consensus 162 ~~~G~~~~~~~~~~nvC~~~~~GHfslVV~~~~~~~~~~~~~~~~~~~~~~W~iv~g~~~G~~~L~ll~~lv~~~vr~kr 241 (278)
T PF06697_consen 162 DLDGSVTFSNMTSPNVCSTSRQGHFSLVVPSPAPPPAPPPPGAPPRKRSWWWKIVVGVVGGVVLLGLLSLLVAMLVRYKR 241 (278)
T ss_pred cCCCcEEEeccCCCceeeeecCceEEEEEcCCCCCCCCCCcccccCCcceeEEEEEEehHHHHHHHHHHHHHHhhhhhhH
Confidence 99999999999999999999999999999721 23333333455889999999999999999999999
Q ss_pred HHHHHHHHHhcccccccceEeecCccCCccccccccC
Q 023060 244 AKKIQVMEKQADEDLVLDTIWVGRSKMPSATVTRTQP 280 (288)
Q Consensus 244 ~~ki~eMEr~A~~gE~L~~~~VG~sraPsA~~tRT~P 280 (288)
|||||||||+||+||+|||+||||||||+|++|||||
T Consensus 242 k~k~~eMEr~A~~gE~L~~~~VG~sraPsA~~tRT~P 278 (278)
T PF06697_consen 242 KKKIEEMERRAEEGEALQMSWVGGSRAPSATVTRTQP 278 (278)
T ss_pred HHHHHHHHHhhccCceeeeEEEccccCccccccccCC
Confidence 9999999999999999999999999999999999999
No 2
>PF15102 TMEM154: TMEM154 protein family
Probab=84.52 E-value=0.45 Score=41.82 Aligned_cols=58 Identities=19% Similarity=0.260 Sum_probs=38.0
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhcccccccceEeecCccCCccccccccCcccCC
Q 023060 221 IVLGIGGFILIGYVVIASVKVLKAKKIQVMEKQADEDLVLDTIWVGRSKMPSATVTRTQPTLEDG 285 (288)
Q Consensus 221 ~v~G~~glvlL~~lv~~~vr~~r~~ki~eMEr~A~~gE~L~~~~VG~sraPsA~~tRT~P~LE~~ 285 (288)
.++..++|+||-+++++++.+.||||..+=+-+...-+++|.-=.|+-+.| +|++|+|
T Consensus 61 IlIP~VLLvlLLl~vV~lv~~~kRkr~K~~~ss~gsq~~~qt~e~~~Env~-------~PiFEed 118 (146)
T PF15102_consen 61 ILIPLVLLVLLLLSVVCLVIYYKRKRTKQEPSSQGSQSALQTYELGSENVK-------VPIFEED 118 (146)
T ss_pred EeHHHHHHHHHHHHHHHheeEEeecccCCCCccccccccccccccCccccc-------ccccccC
Confidence 444555566666666777666666666555566677788887777777665 3577776
No 3
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=84.08 E-value=0.32 Score=43.08 Aligned_cols=19 Identities=53% Similarity=0.933 Sum_probs=13.8
Q ss_pred EEEEeehhhHHHHHHHHHH
Q 023060 215 KLWAIGIVLGIGGFILIGY 233 (288)
Q Consensus 215 k~wvig~v~G~~glvlL~~ 233 (288)
|-.|||+|+|+++.+||+.
T Consensus 48 knIVIGvVVGVGg~ill~i 66 (154)
T PF04478_consen 48 KNIVIGVVVGVGGPILLGI 66 (154)
T ss_pred ccEEEEEEecccHHHHHHH
Confidence 3457899998877777664
No 4
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=83.70 E-value=1.2 Score=37.27 Aligned_cols=19 Identities=11% Similarity=-0.120 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHhhhhhhH
Q 023060 226 GGFILIGYVVIASVKVLKA 244 (288)
Q Consensus 226 ~glvlL~~lv~~~vr~~r~ 244 (288)
++++||.++++++.+.||+
T Consensus 9 i~~i~l~~~~~~~~~rRR~ 27 (130)
T PF12273_consen 9 IVAILLFLFLFYCHNRRRR 27 (130)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3333344444444433333
No 5
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=82.03 E-value=0.68 Score=39.42 Aligned_cols=23 Identities=26% Similarity=0.495 Sum_probs=10.0
Q ss_pred ehhhHHHHHHHHHHHHHHhhhhhhH
Q 023060 220 GIVLGIGGFILIGYVVIASVKVLKA 244 (288)
Q Consensus 220 g~v~G~~glvlL~~lv~~~vr~~r~ 244 (288)
|+++|++|++| ++.+++.|.+||
T Consensus 72 gv~aGvIg~Il--li~y~irR~~Kk 94 (122)
T PF01102_consen 72 GVMAGVIGIIL--LISYCIRRLRKK 94 (122)
T ss_dssp HHHHHHHHHHH--HHHHHHHHHS--
T ss_pred HHHHHHHHHHH--HHHHHHHHHhcc
Confidence 55556655543 333344444444
No 6
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=81.72 E-value=1.6 Score=44.10 Aligned_cols=38 Identities=16% Similarity=0.266 Sum_probs=17.6
Q ss_pred cCcceEEEEEEeecCCcccccccCCCceeeceeeEEEeecc
Q 023060 94 VPHVKRLALVYHDFGNWSSHYYTVPGYSMITPVIGFKVFDA 134 (288)
Q Consensus 94 ~P~v~Rl~lVyqnlGNwSs~yY~~pgY~lvsPVlGllaYda 134 (288)
.|...++-+--+| .-+|-|....=-.+++-|=+-++|.
T Consensus 141 ~p~~~~~~~~~~~---~~s~vf~~Gdtf~~~v~l~~~~~d~ 178 (439)
T PF02480_consen 141 VPHRHGATFHLKN---YHSHVFSPGDTFHLSVHLQSEAHDD 178 (439)
T ss_dssp -----SEEEEEE-----SEEE--TT--EE---EEEEEESSS
T ss_pred CCcccccEEEEec---cceEEecCCCcEEEeEEEEeccCCC
Confidence 4455666665555 4777787766677888888888885
No 7
>PF06697 DUF1191: Protein of unknown function (DUF1191); InterPro: IPR010605 This family contains hypothetical plant proteins of unknown function.
Probab=81.58 E-value=1.5 Score=42.06 Aligned_cols=44 Identities=23% Similarity=0.525 Sum_probs=31.7
Q ss_pred ceEEEEeehhhH-HHHHHHHHHHHHHhhhhhhHHHHHHHHHhccc
Q 023060 213 QWKLWAIGIVLG-IGGFILIGYVVIASVKVLKAKKIQVMEKQADE 256 (288)
Q Consensus 213 ~wk~wvig~v~G-~~glvlL~~lv~~~vr~~r~~ki~eMEr~A~~ 256 (288)
.+|+|.-=.++| ++|+++|+++.+.+....|-||.++||.---+
T Consensus 207 ~~~~~~W~iv~g~~~G~~~L~ll~~lv~~~vr~krk~k~~eMEr~ 251 (278)
T PF06697_consen 207 RKRSWWWKIVVGVVGGVVLLGLLSLLVAMLVRYKRKKKIEEMERR 251 (278)
T ss_pred CCcceeEEEEEEehHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHh
Confidence 455555445667 78888888888888888888888888764333
No 8
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=78.07 E-value=2.7 Score=40.10 Aligned_cols=53 Identities=15% Similarity=0.256 Sum_probs=32.5
Q ss_pred CCCCceEEEEeehhhHHHHHHHHHHHHHHhhhhhhHHHHHHHHH----hcccccccce
Q 023060 209 RKRGQWKLWAIGIVLGIGGFILIGYVVIASVKVLKAKKIQVMEK----QADEDLVLDT 262 (288)
Q Consensus 209 ~~~~~wk~wvig~v~G~~glvlL~~lv~~~vr~~r~~ki~eMEr----~A~~gE~L~~ 262 (288)
++..+.++..|++.++++.++||+++.+.+-+.+||++ ..++. +-||+|.+|+
T Consensus 222 ~~l~~G~VVlIslAiALG~v~ll~l~Gii~~~~~r~~~-~~~~~p~~~~~d~~~~~~~ 278 (281)
T PF12768_consen 222 KKLSRGFVVLISLAIALGTVFLLVLIGIILAYIRRRRQ-GYVPAPTSPRIDEDEMMQR 278 (281)
T ss_pred ccccceEEEEEehHHHHHHHHHHHHHHHHHHHHHhhhc-cCcCCCcccccCccccccc
Confidence 45566677667877777767777776655544444421 12322 6788888775
No 9
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=76.61 E-value=1.9 Score=41.68 Aligned_cols=32 Identities=19% Similarity=0.268 Sum_probs=20.3
Q ss_pred EeehhhHHHHHHHHHHHHHHhhhhhhHHHHHH
Q 023060 218 AIGIVLGIGGFILIGYVVIASVKVLKAKKIQV 249 (288)
Q Consensus 218 vig~v~G~~glvlL~~lv~~~vr~~r~~ki~e 249 (288)
++++++.++.+||+.+++....|++|||||.+
T Consensus 258 I~aSiiaIliIVLIMvIIYLILRYRRKKKmkK 289 (299)
T PF02009_consen 258 IIASIIAILIIVLIMVIIYLILRYRRKKKMKK 289 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 34455555545555555555689999888875
No 10
>PF04995 CcmD: Heme exporter protein D (CcmD); InterPro: IPR007078 The CcmD protein is part of a C-type cytochrome biogenesis operon []. The exact function of this protein is uncertain. It has been proposed that CcmC, CcmD and CcmE interact directly with each other, establishing a cytoplasm to periplasm haem delivery pathway for cytochrome c maturation []. This protein is found fused to CcmE in P52224 from SWISSPROT. These proteins contain a predicted transmembrane helix.; GO: 0006810 transport, 0016021 integral to membrane
Probab=74.78 E-value=6.5 Score=27.66 Aligned_cols=29 Identities=17% Similarity=0.391 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHhhhhhh-HHHHHHHHHh
Q 023060 225 IGGFILIGYVVIASVKVLK-AKKIQVMEKQ 253 (288)
Q Consensus 225 ~~glvlL~~lv~~~vr~~r-~~ki~eMEr~ 253 (288)
+..++++++++....+.++ ++++++.|++
T Consensus 13 ~t~~~l~~l~~~~~~~~r~~~~~l~~~~~r 42 (46)
T PF04995_consen 13 VTALVLAGLIVWSLRRRRRLRKELKRLEAR 42 (46)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444444444444 5555555554
No 11
>PF07271 Cytadhesin_P30: Cytadhesin P30/P32; InterPro: IPR009896 This family consists of several Mycoplasma species specific Cytadhesin P32 and P30 proteins. P30 has been found to be membrane associated and localised on the tip organelle. It is thought that it is important in cytadherence and virulence [].; GO: 0007157 heterophilic cell-cell adhesion, 0009405 pathogenesis, 0016021 integral to membrane
Probab=69.34 E-value=4.3 Score=39.10 Aligned_cols=35 Identities=20% Similarity=0.295 Sum_probs=18.3
Q ss_pred eehhhHHHHHH-HHHH-HHHHhhhhhhHHHHHHHHHh
Q 023060 219 IGIVLGIGGFI-LIGY-VVIASVKVLKAKKIQVMEKQ 253 (288)
Q Consensus 219 ig~v~G~~glv-lL~~-lv~~~vr~~r~~ki~eMEr~ 253 (288)
+|...|++.+. +||+ +..-++|.|.|+.+||-|++
T Consensus 73 v~~~~G~~~v~liLgl~ig~p~~krkek~~iee~e~~ 109 (279)
T PF07271_consen 73 VGGSAGLLAVALILGLAIGIPIYKRKEKRMIEEKEEH 109 (279)
T ss_pred ccchhhHHHHHHHHHHhhcchhhhhhHHHHHHHHHHH
Confidence 34444543333 3444 22334775557777777764
No 12
>KOG4289 consensus Cadherin EGF LAG seven-pass G-type receptor [Signal transduction mechanisms]
Probab=68.37 E-value=20 Score=42.04 Aligned_cols=112 Identities=14% Similarity=0.322 Sum_probs=65.1
Q ss_pred EEEeeccCCcccCCcceeEEEe-cCCCeEEEcCCCccCCCCCCcceeEEEcc-CCceEEcc--cccCc----eeEeecCC
Q 023060 128 GFKVFDASNMMSRSVKKLSLNT-MGKPIVIRFSNSTLSDGMVSKARCAIFSS-NGTLHLGE--ITLAN----VCFSQDQG 199 (288)
Q Consensus 128 GllaYdasnl~~~~~~~l~l~~-~g~PI~I~F~~~~~~~~~~~~~~Cv~F~~-~G~~~~~~--~~~~n----vC~~~~~G 199 (288)
||+-|--.+- .+.|..++.. ..+||.|.|.-+... +-+.|.||-||. .|.=+.+. +..-| .|.-.+.|
T Consensus 2071 ~llP~P~~pi--~ntP~~a~l~~l~~Pv~veF~lle~~--~rtkpiCV~wde~tG~WtARgcelv~rN~tHaaCqcnr~g 2146 (2531)
T KOG4289|consen 2071 GLLPYPRRPI--INTPMIAILPRLEDPVIVEFRLLETE--ERTKPICVFWDEGTGGWTARGCELVGRNLTHAACQCNRTG 2146 (2531)
T ss_pred ecccCCCCCc--cCCcchhccccCCCCeEEEEEEEecc--CcccceEEEEcCCCCceeeccceeeccccceeeeeeccce
Confidence 5555533222 2224555554 578999999976544 346779999996 56556654 33333 79999999
Q ss_pred eeEEEEeCCCCCCce-EEEEe--ehhhHH-HHHHHHHHHHHHhhhhhh
Q 023060 200 HFSIVVPLKRKRGQW-KLWAI--GIVLGI-GGFILIGYVVIASVKVLK 243 (288)
Q Consensus 200 HfslVV~~~~~~~~w-k~wvi--g~v~G~-~glvlL~~lv~~~vr~~r 243 (288)
-|++.+..+++...- .--.+ -.++|+ +.+.+|.++++..+|..|
T Consensus 2147 sF~vlmd~s~re~g~~~~l~~~t~a~~gvslaal~lt~~llls~RsLk 2194 (2531)
T KOG4289|consen 2147 SFAVLMDDSRRENGEALPLKMTTYAAVGVSLAALLLTFLLLLSLRSLK 2194 (2531)
T ss_pred eEEEEEccCcccccceehhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999854433110 00011 123343 334445555555566655
No 13
>PTZ00046 rifin; Provisional
Probab=67.53 E-value=3.4 Score=41.07 Aligned_cols=36 Identities=17% Similarity=0.213 Sum_probs=22.9
Q ss_pred eEEEEeehhhHHHHHHHHHHHHHHhhhhhhHHHHHH
Q 023060 214 WKLWAIGIVLGIGGFILIGYVVIASVKVLKAKKIQV 249 (288)
Q Consensus 214 wk~wvig~v~G~~glvlL~~lv~~~vr~~r~~ki~e 249 (288)
|.-.++.+++.++..||..+++....||+|||||.+
T Consensus 313 ~~taIiaSiiAIvVIVLIMvIIYLILRYRRKKKMkK 348 (358)
T PTZ00046 313 LQTAIIASIVAIVVIVLIMVIIYLILRYRRKKKMKK 348 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHH
Confidence 333344555555555555555556689999999876
No 14
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=66.36 E-value=3.8 Score=40.70 Aligned_cols=32 Identities=19% Similarity=0.268 Sum_probs=20.7
Q ss_pred EeehhhHHHHHHHHHHHHHHhhhhhhHHHHHH
Q 023060 218 AIGIVLGIGGFILIGYVVIASVKVLKAKKIQV 249 (288)
Q Consensus 218 vig~v~G~~glvlL~~lv~~~vr~~r~~ki~e 249 (288)
++.+++.++..||..+++....||+|||||.+
T Consensus 312 IiaSiIAIvvIVLIMvIIYLILRYRRKKKMkK 343 (353)
T TIGR01477 312 IIASIIAILIIVLIMVIIYLILRYRRKKKMKK 343 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcchhHH
Confidence 34455555555555555555689999999876
No 15
>TIGR03141 cytochro_ccmD heme exporter protein CcmD. The model for this protein family describes a small, hydrophobic, and only moderately well-conserved protein, tricky to identify accurately for all of these reasons. However, members are found as part of large operons involved in heme export across the inner membrane for assembly of c-type cytochromes in a large number of bacteria. The gray zone between the trusted cutoff (13.0) and noise cutoff (4.75) includes both low-scoring examples and false-positive matches to hydrophobic domains of longer proteins.
Probab=66.03 E-value=13 Score=26.10 Aligned_cols=9 Identities=11% Similarity=0.409 Sum_probs=4.3
Q ss_pred HHHHHHHHH
Q 023060 244 AKKIQVMEK 252 (288)
Q Consensus 244 ~~ki~eMEr 252 (288)
++++++-|+
T Consensus 34 ~~~l~~~~~ 42 (45)
T TIGR03141 34 LRELRRLEA 42 (45)
T ss_pred HHHHHHHHH
Confidence 444554443
No 16
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=65.08 E-value=3.2 Score=35.75 Aligned_cols=41 Identities=24% Similarity=0.400 Sum_probs=28.0
Q ss_pred HHHHHHHHHh-hhhhhHHHHHHHHHhcccccccceEeecCcc
Q 023060 229 ILIGYVVIAS-VKVLKAKKIQVMEKQADEDLVLDTIWVGRSK 269 (288)
Q Consensus 229 vlL~~lv~~~-vr~~r~~ki~eMEr~A~~gE~L~~~~VG~sr 269 (288)
+++|++++.. +.-.|++|++.+|++..|-..++-+.+-..+
T Consensus 47 lvi~~~LLgrsi~ANRnrK~~~~~k~~pE~~~~~es~~kd~~ 88 (125)
T PF15048_consen 47 LVISFFLLGRSIQANRNRKMQPQEKQTPEVLSLDESGLKDDN 88 (125)
T ss_pred HHHHHHHHHHHhHhccccccccccccCHHHhhcccccccccc
Confidence 3455555444 7778888888999988887777766554443
No 17
>KOG3637 consensus Vitronectin receptor, alpha subunit [Extracellular structures]
Probab=64.01 E-value=3.1 Score=46.32 Aligned_cols=39 Identities=26% Similarity=0.357 Sum_probs=18.3
Q ss_pred EEEeehhhHHHHHHHHHHHHHHhhhh---hhHHH-HHHHHHhccc
Q 023060 216 LWAIGIVLGIGGFILIGYVVIASVKV---LKAKK-IQVMEKQADE 256 (288)
Q Consensus 216 ~wvig~v~G~~glvlL~~lv~~~vr~---~r~~k-i~eMEr~A~~ 256 (288)
|+||++++ +||.||+++++++-|. ||++| ..+||++...
T Consensus 979 wiIi~svl--~GLLlL~llv~~LwK~GFFKR~r~~~~~~~~~~~~ 1021 (1030)
T KOG3637|consen 979 WIIILSVL--GGLLLLALLVLLLWKCGFFKRNRKHPKEQEEEDKS 1021 (1030)
T ss_pred eeehHHHH--HHHHHHHHHHHHHHhcCccccCCCCcccccccccC
Confidence 33434333 3444555555555443 55554 3345555433
No 18
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=63.67 E-value=9.7 Score=27.80 Aligned_cols=11 Identities=27% Similarity=0.501 Sum_probs=5.3
Q ss_pred HHHHHHHHHhc
Q 023060 244 AKKIQVMEKQA 254 (288)
Q Consensus 244 ~~ki~eMEr~A 254 (288)
+|+++++|++-
T Consensus 54 ~k~l~~le~e~ 64 (68)
T PF06305_consen 54 RKELKKLEKEL 64 (68)
T ss_pred HHHHHHHHHHH
Confidence 44455555543
No 19
>smart00218 ZU5 Domain present in ZO-1 and Unc5-like netrin receptors. Domain of unknown function.
Probab=57.39 E-value=22 Score=29.46 Aligned_cols=73 Identities=19% Similarity=0.287 Sum_probs=45.5
Q ss_pred EecccccccCCccceeecCCCccccCcceEEEE-EEeecCCcccccccC-CCceeeceeeEEEeeccCCcccCCcceeEE
Q 023060 70 LRSRRLWNRGANFCNFHIPSRTIPVPHVKRLAL-VYHDFGNWSSHYYTV-PGYSMITPVIGFKVFDASNMMSRSVKKLSL 147 (288)
Q Consensus 70 lRsgSLrr~G~~~~eF~IP~gv~~~P~v~Rl~l-VyqnlGNwSs~yY~~-pgY~lvsPVlGllaYdasnl~~~~~~~l~l 147 (288)
-|.|.|+-..... ...||||.+++|--.-+.+ |.|+ .+..-++ .|-+++|||+=. ++..+.+
T Consensus 11 ~~GG~L~~~~~Gv-~L~IPpgAi~~~~~~~iyl~v~~~----~~~~p~l~~~e~llSpvV~c-----------GP~G~~f 74 (104)
T smart00218 11 ARGGRLRGPRTGV-RLIIPPGAIPQGTRYTCYLVVHKT----LSTPPPLEEGETLLSPVVEC-----------GPHGALF 74 (104)
T ss_pred CCCCEEEeCCCCe-EEEeCCCCCCCCCEEEEEEEEecC----cCCCCccCCCcEeeCCeEEE-----------CCCCCeE
Confidence 3556666554333 3889999999984322322 3333 2333455 589999999743 2334444
Q ss_pred EecCCCeEEEcCCC
Q 023060 148 NTMGKPIVIRFSNS 161 (288)
Q Consensus 148 ~~~g~PI~I~F~~~ 161 (288)
. +||.++|++-
T Consensus 75 ~---~PViL~vPHc 85 (104)
T smart00218 75 L---RPVILEVPHC 85 (104)
T ss_pred c---CCEEEecccc
Confidence 3 7999999984
No 20
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=57.12 E-value=9.5 Score=35.72 Aligned_cols=24 Identities=33% Similarity=0.436 Sum_probs=15.6
Q ss_pred EEEE-eehhhHHHHHHHHHHHHHHh
Q 023060 215 KLWA-IGIVLGIGGFILIGYVVIAS 238 (288)
Q Consensus 215 k~wv-ig~v~G~~glvlL~~lv~~~ 238 (288)
+++| ||+|.|++++||+-++++.+
T Consensus 36 ~~~I~iaiVAG~~tVILVI~i~v~v 60 (221)
T PF08374_consen 36 YVKIMIAIVAGIMTVILVIFIVVLV 60 (221)
T ss_pred ceeeeeeeecchhhhHHHHHHHHHH
Confidence 3445 47788888877766655444
No 21
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=56.58 E-value=5.4 Score=33.14 Aligned_cols=30 Identities=13% Similarity=0.028 Sum_probs=17.2
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhHHHHHHH
Q 023060 221 IVLGIGGFILIGYVVIASVKVLKAKKIQVM 250 (288)
Q Consensus 221 ~v~G~~glvlL~~lv~~~vr~~r~~ki~eM 250 (288)
.++|++.+++|++-+++.+..+|++|..+.
T Consensus 5 ~il~llLll~l~asl~~wr~~~rq~k~~~~ 34 (107)
T PF15330_consen 5 GILALLLLLSLAASLLAWRMKQRQKKAGQY 34 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccCC
Confidence 344555566666655555555666665555
No 22
>PF02529 PetG: Cytochrome B6-F complex subunit 5; InterPro: IPR003683 This family consists of cytochrome b6/f complex subunit 5 (PetG). The cytochrome bf complex, found in green plants, eukaryotic algae and cyanobacteria, connects photosystem I to photosystem II in the electron transport chain, functioning as a plastoquinol:plastocyanin/cytochrome c6 oxidoreductase []. The purified complex from the unicellular alga Chlamydomonas reinhardtii contains seven subunits; namely four high molecular weight subunits (cytochrome f, Rieske iron-sulphur protein, cytochrome b6, and subunit IV) and three approximately miniproteins (PetG, PetL, and PetX) []. Stoichiometry measurements are consistent with every subunit being present as two copies per b6/f dimer. The absence of PetG affects either the assembly or stability of the cytochrome bf complex in C. reinhardtii [].; GO: 0009512 cytochrome b6f complex; PDB: 1Q90_G 2ZT9_G 1VF5_G 2D2C_G 2E74_G 2E75_G 2E76_G.
Probab=56.50 E-value=7.5 Score=27.02 Aligned_cols=28 Identities=32% Similarity=0.502 Sum_probs=22.8
Q ss_pred ehhhHHHHHHHHHHHHHHhhhhhhHHHH
Q 023060 220 GIVLGIGGFILIGYVVIASVKVLKAKKI 247 (288)
Q Consensus 220 g~v~G~~glvlL~~lv~~~vr~~r~~ki 247 (288)
|.|+|.+-+.+.|+++.+-..++|.+++
T Consensus 8 GiVlGli~vtl~Glfv~Ay~QY~Rg~ql 35 (37)
T PF02529_consen 8 GIVLGLIPVTLAGLFVAAYLQYRRGNQL 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCS--TT
T ss_pred hHHHHhHHHHHHHHHHHHHHHHhccccc
Confidence 7788999999999999999999887654
No 23
>PHA01080 hypothetical protein
Probab=54.80 E-value=20 Score=28.75 Aligned_cols=67 Identities=19% Similarity=0.200 Sum_probs=42.1
Q ss_pred ceeEEEccCCceEEcccccCceeEeecCCeeEEEEeCC-------CCCCceEEEEe-ehhhHHHHHHHHHHHHHHhhhhh
Q 023060 171 ARCAIFSSNGTLHLGEITLANVCFSQDQGHFSIVVPLK-------RKRGQWKLWAI-GIVLGIGGFILIGYVVIASVKVL 242 (288)
Q Consensus 171 ~~Cv~F~~~G~~~~~~~~~~nvC~~~~~GHfslVV~~~-------~~~~~wk~wvi-g~v~G~~glvlL~~lv~~~vr~~ 242 (288)
+.|+-|.+||-...+...-.+-|.+ |-+|-+.+ -.... .-+. .|++||..+++||++-.-.||..
T Consensus 2 p~C~~~n~dGfLv~t~~~~~~~csg-----yv~Vt~~eY~~~~~~~~itp--t~~~qaFglgF~~V~~lgyls~YaVkia 74 (80)
T PHA01080 2 PVCALPNSQGFLAVTDKPLNECDGG-----YVAVTIQDYDYLMSYTRITP--TDAGTAFSFGFMAVFALGYLSTYAVYIG 74 (80)
T ss_pred CeeeccCCCceEEecCcccccCCce-----EEEEchHHHHHHHHHhccCH--HHHHHHHhhhHHHHHHhhhhHHHHHHHH
Confidence 4899999999988776555556754 33444310 00000 0011 36778999999999887777766
Q ss_pred hH
Q 023060 243 KA 244 (288)
Q Consensus 243 r~ 244 (288)
||
T Consensus 75 kk 76 (80)
T PHA01080 75 KK 76 (80)
T ss_pred HH
Confidence 54
No 24
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=53.11 E-value=22 Score=25.06 Aligned_cols=24 Identities=17% Similarity=0.209 Sum_probs=16.0
Q ss_pred HHHHhhhhhhHHHHHHHHHhcccc
Q 023060 234 VVIASVKVLKAKKIQVMEKQADED 257 (288)
Q Consensus 234 lv~~~vr~~r~~ki~eMEr~A~~g 257 (288)
+++++.+-+||++.+++.+-.-++
T Consensus 25 i~~w~~~~~~k~~~e~aa~lpl~d 48 (49)
T PF05545_consen 25 IVIWAYRPRNKKRFEEAANLPLDD 48 (49)
T ss_pred HHHHHHcccchhhHHHHHccCccC
Confidence 344556667788888887765444
No 25
>CHL00008 petG cytochrome b6/f complex subunit V
Probab=50.36 E-value=15 Score=25.59 Aligned_cols=29 Identities=31% Similarity=0.505 Sum_probs=24.1
Q ss_pred eehhhHHHHHHHHHHHHHHhhhhhhHHHH
Q 023060 219 IGIVLGIGGFILIGYVVIASVKVLKAKKI 247 (288)
Q Consensus 219 ig~v~G~~glvlL~~lv~~~vr~~r~~ki 247 (288)
.|.|+|.+-+-++|+++.+-..+||...+
T Consensus 7 ~GiVLGlipvTl~GlfvaAylQYrRg~~l 35 (37)
T CHL00008 7 FGIVLGLIPITLAGLFVTAYLQYRRGDQL 35 (37)
T ss_pred hhHHHHhHHHHHHHHHHHHHHHHhhcccc
Confidence 37888999999999999999888886543
No 26
>KOG3603 consensus Predicted phospholipase D [General function prediction only]
Probab=50.05 E-value=6.6 Score=40.15 Aligned_cols=77 Identities=25% Similarity=0.431 Sum_probs=41.7
Q ss_pred hHHHHHHHHHHHhhh-----cCCCCCCceEeeccCC--CCCCceEEEEEEecccccccC-CccceeecCCCc-cccCcce
Q 023060 28 SLDTCLQDFAFRTLI-----RHRPHTGNLYNAMLPA--NLSGMSVSIVRLRSRRLWNRG-ANFCNFHIPSRT-IPVPHVK 98 (288)
Q Consensus 28 ~LD~~lqd~A~k~l~-----~~r~~TG~~y~~~LP~--NlSGi~vsavRlRsgSLrr~G-~~~~eF~IP~gv-~~~P~v~ 98 (288)
.+|+.||+.|+|... ...+||-..-..-|-+ .|++ -+ .+| ++.+-|.||+.- ...||.+
T Consensus 313 ~iDdaiR~aa~RgV~vR~lvs~~~~~~~~m~~~L~SLq~l~~-----------~~-~~~~iqvk~f~VP~~~~~~ip~~R 380 (456)
T KOG3603|consen 313 EIDDAIRRAAVRGVKVRLLVSCWKHSEPSMFRFLRSLQDLSD-----------PL-ENGSIQVKFFIVPQTNIEKIPFAR 380 (456)
T ss_pred hhhHHHHHHhhcceEEEEEEeccCCCCchHHHHHHHHHHhcC-----------cc-ccCceEEEEEEeCCCccccCchhh
Confidence 899999999996432 2233332221111110 1111 11 445 678889999988 5567653
Q ss_pred EE---EEEEee---cC--Cccccccc
Q 023060 99 RL---ALVYHD---FG--NWSSHYYT 116 (288)
Q Consensus 99 Rl---~lVyqn---lG--NwSs~yY~ 116 (288)
+- -.|=++ .| |||..||.
T Consensus 381 v~HnKymVTe~aayIGTSNws~dYf~ 406 (456)
T KOG3603|consen 381 VNHNKYMVTESAAYIGTSNWSGDYFT 406 (456)
T ss_pred hccceeEEeecceeeeccCCCcccee
Confidence 21 123333 36 99998863
No 27
>PHA03265 envelope glycoprotein D; Provisional
Probab=49.18 E-value=16 Score=36.65 Aligned_cols=22 Identities=32% Similarity=0.668 Sum_probs=15.6
Q ss_pred hhHHHHHHHHHHHHHHhhhhhh
Q 023060 222 VLGIGGFILIGYVVIASVKVLK 243 (288)
Q Consensus 222 v~G~~glvlL~~lv~~~vr~~r 243 (288)
++|+.|||++|.+++.+.|.+|
T Consensus 355 g~~i~glv~vg~il~~~~rr~k 376 (402)
T PHA03265 355 GLGIAGLVLVGVILYVCLRRKK 376 (402)
T ss_pred ccchhhhhhhhHHHHHHhhhhh
Confidence 3478899999987766654444
No 28
>PF09926 DUF2158: Uncharacterized small protein (DUF2158); InterPro: IPR019226 This entry represents a family of predominantly prokaryotic proteins with no known function.
Probab=47.02 E-value=32 Score=25.31 Aligned_cols=37 Identities=14% Similarity=0.268 Sum_probs=22.5
Q ss_pred eeEEEecCCCeEEEcCCCccCCCCCCcceeEEEccCCc
Q 023060 144 KLSLNTMGKPIVIRFSNSTLSDGMVSKARCAIFSSNGT 181 (288)
Q Consensus 144 ~l~l~~~g~PI~I~F~~~~~~~~~~~~~~Cv~F~~~G~ 181 (288)
.+.|...|-+++|..-.-. ......-+.|.|||.+|.
T Consensus 6 vV~LKSGGp~MTV~~v~~~-~~~~~~~v~C~WFd~~~~ 42 (53)
T PF09926_consen 6 VVQLKSGGPRMTVTEVGPN-AGASGGWVECQWFDGHGE 42 (53)
T ss_pred EEEEccCCCCeEEEEcccc-ccCCCCeEEEEeCCCCCc
Confidence 4666655567788743211 112234559999999886
No 29
>PRK00665 petG cytochrome b6-f complex subunit PetG; Reviewed
Probab=45.39 E-value=18 Score=25.11 Aligned_cols=28 Identities=32% Similarity=0.393 Sum_probs=23.3
Q ss_pred eehhhHHHHHHHHHHHHHHhhhhhhHHH
Q 023060 219 IGIVLGIGGFILIGYVVIASVKVLKAKK 246 (288)
Q Consensus 219 ig~v~G~~glvlL~~lv~~~vr~~r~~k 246 (288)
.|.|+|.+-+-+.|+++.+-..+||...
T Consensus 7 ~GiVLGlipiTl~GlfvaAylQYrRg~~ 34 (37)
T PRK00665 7 CGIVLGLIPVTLAGLFVAAWNQYKRGNQ 34 (37)
T ss_pred hhHHHHhHHHHHHHHHHHHHHHHhcccc
Confidence 3778899999999999999888887543
No 30
>PF15345 TMEM51: Transmembrane protein 51
Probab=45.03 E-value=36 Score=32.18 Aligned_cols=17 Identities=35% Similarity=0.589 Sum_probs=7.7
Q ss_pred EEEEeehhh-HHHHHHHHH
Q 023060 215 KLWAIGIVL-GIGGFILIG 232 (288)
Q Consensus 215 k~wvig~v~-G~~glvlL~ 232 (288)
|-..+.+|+ |+ |++||-
T Consensus 56 Kt~SVAyVLVG~-Gv~LLL 73 (233)
T PF15345_consen 56 KTFSVAYVLVGS-GVALLL 73 (233)
T ss_pred eeEEEEEehhhH-HHHHHH
Confidence 344444554 66 343333
No 31
>PHA03283 envelope glycoprotein E; Provisional
Probab=44.39 E-value=50 Score=34.73 Aligned_cols=29 Identities=10% Similarity=0.087 Sum_probs=16.5
Q ss_pred eEEEEe--ehhhHHHHHHHHHHHHHHhhhhh
Q 023060 214 WKLWAI--GIVLGIGGFILIGYVVIASVKVL 242 (288)
Q Consensus 214 wk~wvi--g~v~G~~glvlL~~lv~~~vr~~ 242 (288)
-+-|+. +.++++.|++++++.+.++++..
T Consensus 396 ~~~~l~~~~~~~~~~~~~~~~l~vw~c~~~r 426 (542)
T PHA03283 396 TRHYLAFLLAIICTCAALLVALVVWGCILYR 426 (542)
T ss_pred ccccchhHHHHHHHHHHHHHHHhhhheeeeh
Confidence 344552 33334566777777777776643
No 32
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=44.33 E-value=18 Score=30.17 Aligned_cols=21 Identities=5% Similarity=-0.004 Sum_probs=9.7
Q ss_pred HHHHHHHHHhhhhhhHHHHHH
Q 023060 229 ILIGYVVIASVKVLKAKKIQV 249 (288)
Q Consensus 229 vlL~~lv~~~vr~~r~~ki~e 249 (288)
|++.++++.+.-..+|||+++
T Consensus 9 i~~i~l~~~~~~~~~rRR~r~ 29 (130)
T PF12273_consen 9 IVAILLFLFLFYCHNRRRRRR 29 (130)
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 333334444445555555554
No 33
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=41.26 E-value=12 Score=32.69 Aligned_cols=13 Identities=15% Similarity=0.376 Sum_probs=8.3
Q ss_pred eeEEEccCCceEE
Q 023060 172 RCAIFSSNGTLHL 184 (288)
Q Consensus 172 ~Cv~F~~~G~~~~ 184 (288)
.|-++|.+|..+-
T Consensus 5 ~C~y~d~~g~~~~ 17 (179)
T PF13908_consen 5 YCHYYDVMGQWDP 17 (179)
T ss_pred cceeecCCCCCcc
Confidence 5666777776554
No 34
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=37.57 E-value=59 Score=26.37 Aligned_cols=20 Identities=20% Similarity=-0.026 Sum_probs=8.6
Q ss_pred HHHHHHHhhhhhh-HHHHHHH
Q 023060 231 IGYVVIASVKVLK-AKKIQVM 250 (288)
Q Consensus 231 L~~lv~~~vr~~r-~~ki~eM 250 (288)
++++.....|.+| +++++++
T Consensus 15 ~~i~~y~~~k~~ka~~~~~kL 35 (87)
T PF10883_consen 15 ALILAYLWWKVKKAKKQNAKL 35 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 3333334455555 4444443
No 35
>PF04689 S1FA: DNA binding protein S1FA; InterPro: IPR006779 S1FA is an unusual small plant peptide of only 70 amino acids with a basic domain which contains a nuclear localization signal and a putative DNA binding helix. S1FA is highly conserved between dicotyledonous and monocotyledonous plants and may be a DNA-binding protein that specifically recognises the negative promoter element S1F [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=36.78 E-value=81 Score=24.64 Aligned_cols=21 Identities=24% Similarity=0.314 Sum_probs=15.5
Q ss_pred EeehhhHHHHHHHHHHHHHHh
Q 023060 218 AIGIVLGIGGFILIGYVVIAS 238 (288)
Q Consensus 218 vig~v~G~~glvlL~~lv~~~ 238 (288)
++-+|+|+++++|.|..++.+
T Consensus 16 VLlvV~g~ll~flvGnyvlY~ 36 (69)
T PF04689_consen 16 VLLVVAGLLLVFLVGNYVLYV 36 (69)
T ss_pred EeehHHHHHHHHHHHHHHHHH
Confidence 335666899999999876665
No 36
>PF15099 PIRT: Phosphoinositide-interacting protein family
Probab=36.36 E-value=32 Score=29.90 Aligned_cols=31 Identities=26% Similarity=0.209 Sum_probs=15.1
Q ss_pred eehhhHHHHHHHHHHH-HHHhhhhhh-HHHHHH
Q 023060 219 IGIVLGIGGFILIGYV-VIASVKVLK-AKKIQV 249 (288)
Q Consensus 219 ig~v~G~~glvlL~~l-v~~~vr~~r-~~ki~e 249 (288)
+|.++=..||.||..- +.|..+.+| ++|+||
T Consensus 83 ~G~vlLs~GLmlL~~~alcW~~~~rkK~~kr~e 115 (129)
T PF15099_consen 83 FGPVLLSLGLMLLACSALCWKPIIRKKKKKRRE 115 (129)
T ss_pred ehHHHHHHHHHHHHhhhheehhhhHhHHHHhhh
Confidence 4555544555555553 455544444 444443
No 37
>PF15050 SCIMP: SCIMP protein
Probab=36.01 E-value=22 Score=30.85 Aligned_cols=27 Identities=19% Similarity=0.272 Sum_probs=15.3
Q ss_pred EEEeehhhHHHHHHHHHHHHHHhhhhh
Q 023060 216 LWAIGIVLGIGGFILIGYVVIASVKVL 242 (288)
Q Consensus 216 ~wvig~v~G~~glvlL~~lv~~~vr~~ 242 (288)
.|||-.|.=++.-+.||++++|+.|++
T Consensus 8 FWiiLAVaII~vS~~lglIlyCvcR~~ 34 (133)
T PF15050_consen 8 FWIILAVAIILVSVVLGLILYCVCRWQ 34 (133)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356544432233345788888886654
No 38
>PF06006 DUF905: Bacterial protein of unknown function (DUF905); InterPro: IPR009253 This family consists of several short hypothetical proteobacterial proteins of unknown function.; PDB: 2HJJ_A.
Probab=35.98 E-value=32 Score=27.01 Aligned_cols=31 Identities=26% Similarity=0.541 Sum_probs=17.9
Q ss_pred CceeE-eecCCeeEEEEeCCCCCCceEEEEee
Q 023060 190 ANVCF-SQDQGHFSIVVPLKRKRGQWKLWAIG 220 (288)
Q Consensus 190 ~nvC~-~~~~GHfslVV~~~~~~~~wk~wvig 220 (288)
.||-. -.+.+||.|||+.....-.|..|=.-
T Consensus 21 ~NV~IeDdqg~HfRlvvRd~~g~mvWRaWNFE 52 (70)
T PF06006_consen 21 RNVFIEDDQGTHFRLVVRDTEGQMVWRAWNFE 52 (70)
T ss_dssp TTEEEES-SSS--EEEEE-SS--EEEEEESSS
T ss_pred cceeeccCCCCeEEEEEEcCCCcEEEEeeccC
Confidence 44543 34556999999987778888898753
No 39
>PF01825 GPS: Latrophilin/CL-1-like GPS domain; InterPro: IPR000203 This domain has been termed the GPS domain (for GPCR proteolytic site), because it contains a cleavage site in O97830 from SWISSPROT latrophilin []. However this region in latrophilin is found in many otherwise unrelated cell surface receptors []. There is no evidence currently that this domain provides a cleavage site in any of the other receptors. However the peptide bond that is cleaved in latrophilin is between Leu and Thr residues that are conserved in some of the other receptors []. GPS domains are about 50 residues long and contain either 2 or 4 cysteine residues that are likely to form disulphide bridges. Based on conservation of these cysteines the following pairing can be predicted. +-----------------+ | | +-----------------+---------------+ | | | | | XXXCXXXXXXXXXXXXXXXXXCXXXXXXXXXXXXXXXCXCXXLTXXXXXXX ^ cleavage site ; GO: 0007218 neuropeptide signaling pathway, 0016020 membrane; PDB: 4DLQ_B 4DLO_B.
Probab=35.77 E-value=79 Score=21.64 Aligned_cols=36 Identities=11% Similarity=0.361 Sum_probs=22.9
Q ss_pred cceeEEEcc-------CCceEEcccccCceeEeecCCeeEEEE
Q 023060 170 KARCAIFSS-------NGTLHLGEITLANVCFSQDQGHFSIVV 205 (288)
Q Consensus 170 ~~~Cv~F~~-------~G~~~~~~~~~~nvC~~~~~GHfslVV 205 (288)
.+.|+.+|. +|=.....-..--.|.-.....|++.+
T Consensus 2 ~~~C~~Wd~~~~~W~~~GC~~~~~~~~~~~C~C~HlT~Favlm 44 (44)
T PF01825_consen 2 NPQCVYWDEGTGSWSSDGCQVVESSNSHVTCSCNHLTSFAVLM 44 (44)
T ss_dssp EEEEEEEETTTEEEE-TTEEEEEEETTEEEEEECC-SEEEEEE
T ss_pred CCEEEEeeCCCCCCCcccccEecccCCCEEEEeeCCCcEeEeC
Confidence 358999995 553332212223499999999999864
No 40
>COG3216 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.73 E-value=50 Score=30.26 Aligned_cols=75 Identities=17% Similarity=0.195 Sum_probs=35.4
Q ss_pred ceEEcc-cccCcee-EeecCCeeEEEEeCCC-----------CCCceEEEE---eehhhHHHHHHHHH-----HHHHHhh
Q 023060 181 TLHLGE-ITLANVC-FSQDQGHFSIVVPLKR-----------KRGQWKLWA---IGIVLGIGGFILIG-----YVVIASV 239 (288)
Q Consensus 181 ~~~~~~-~~~~nvC-~~~~~GHfslVV~~~~-----------~~~~wk~wv---ig~v~G~~glvlL~-----~lv~~~v 239 (288)
-+.++| +|-|-+- .++..||+=+=.+... ..+..+.|- .+..+|.+-+.+++ .+..+.+
T Consensus 86 ~t~l~NPlT~P~I~~~tyelG~~ll~~~~~s~~~~~l~~~~~~~el~~lw~P~l~pm~vgav~~~a~~~ll~y~~~r~~v 165 (184)
T COG3216 86 GTWLANPLTMPFIWGATYELGAWLLQRPAQSVGPVHLTWMWQSLELSSLWGPVLKPMLVGAVPAGAIGGLLFYGLTRYSV 165 (184)
T ss_pred HhHhcCCcccceeeeeeHhhhhHHhcCCCCCCCchHHHHHHHHhHHHHhcchHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 345556 4444433 5778888755443211 123344553 23333333222222 2333444
Q ss_pred hh-hhHHHHHHHHHhcc
Q 023060 240 KV-LKAKKIQVMEKQAD 255 (288)
Q Consensus 240 r~-~r~~ki~eMEr~A~ 255 (288)
.+ .+||+.+.|||++-
T Consensus 166 ~~f~~rR~~~~~~~~~~ 182 (184)
T COG3216 166 TRFRERRRRSLAERAAL 182 (184)
T ss_pred HHHHHHHHHHHHhhhcc
Confidence 44 44556666888764
No 41
>TIGR03546 conserved hypothetical protein TIGR03546. Members of this family are uncharacterized proteins, usually encoded by a gene adjacent to a member of family TIGR03545, which is also uncharacterized.
Probab=35.55 E-value=50 Score=29.12 Aligned_cols=33 Identities=9% Similarity=0.015 Sum_probs=20.2
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHh
Q 023060 221 IVLGIGGFILIGYVVIASVKVLKAKKIQVMEKQ 253 (288)
Q Consensus 221 ~v~G~~glvlL~~lv~~~vr~~r~~ki~eMEr~ 253 (288)
+++|++..++.-++...+++.-|||+++.||+-
T Consensus 114 ~l~Gli~~~~~Y~ls~~lI~~Yr~~~~~~~~~~ 146 (154)
T TIGR03546 114 FVVGLILLPPAFAISKVIIAKYRKRIVAWVNKF 146 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333555444433455666777778888888863
No 42
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=35.37 E-value=59 Score=23.59 Aligned_cols=10 Identities=20% Similarity=0.179 Sum_probs=4.0
Q ss_pred HHHHHhcccc
Q 023060 248 QVMEKQADED 257 (288)
Q Consensus 248 ~eMEr~A~~g 257 (288)
+++|+...+-
T Consensus 55 k~l~~le~e~ 64 (68)
T PF06305_consen 55 KELKKLEKEL 64 (68)
T ss_pred HHHHHHHHHH
Confidence 3344443333
No 43
>PF12904 Collagen_bind_2: Putative collagen-binding domain of a collagenase ; InterPro: IPR024749 This domain is likely to be the collagen-binding domain of a family of bacterial collagenase enzymes. The structure of one family member, Q8A905 from SWISSPROT, has been characterised. The domain occurs in the C-terminal region of the protein.; PDB: 3KZS_D.
Probab=35.22 E-value=2.3e+02 Score=22.95 Aligned_cols=47 Identities=17% Similarity=0.257 Sum_probs=26.0
Q ss_pred cCCCeEEEcCCCccCCCCCCcceeEEEcc-CCceEEcccccCceeEeecCCeeEEEEeCC
Q 023060 150 MGKPIVIRFSNSTLSDGMVSKARCAIFSS-NGTLHLGEITLANVCFSQDQGHFSIVVPLK 208 (288)
Q Consensus 150 ~g~PI~I~F~~~~~~~~~~~~~~Cv~F~~-~G~~~~~~~~~~nvC~~~~~GHfslVV~~~ 208 (288)
.|.||+|+..++. +...++.|||. +|+.+... ....+|+..+.-|.+
T Consensus 33 ~Gr~~~vdl~~l~-----g~~~~a~WfdPR~G~~~~~g-------~~~~~~~~~F~pP~~ 80 (93)
T PF12904_consen 33 TGRPFTVDLSKLS-----GKKVKAWWFDPRTGKYTYIG-------EFSNKGIQTFTPPSG 80 (93)
T ss_dssp S---EEEEGGGSS------SEEEEEEEETTT-BEEEEE-------EEES-SEEEE--SS-
T ss_pred CCCEEEEEccccc-----CCceeEEEEcCCCCCEEEee-------eecCCcceEecCCCC
Confidence 5789999999875 24459999999 99987632 223455555444444
No 44
>PF00974 Rhabdo_glycop: Rhabdovirus spike glycoprotein; InterPro: IPR001903 Different families of ssRNA negative-strand viruses contain glycoproteins responsible for forming spikes on the surface of the virion. The glycoprotein spike is made up of a trimer of glycoproteins. These proteins are frequently abbreviated to G protein. Channel formed by glycoprotein spike is thought to function in a similar manner to Influenza virus M2 protein channel, thus allowing a signal to pass across the viral membrane to signal for viral uncoating [, ].; GO: 0019031 viral envelope; PDB: 2CMZ_C 2J6J_A 3EGD_D.
Probab=34.89 E-value=13 Score=38.23 Aligned_cols=25 Identities=12% Similarity=0.100 Sum_probs=16.5
Q ss_pred EEEEEEecccccccCCccceeecCC
Q 023060 65 VSIVRLRSRRLWNRGANFCNFHIPS 89 (288)
Q Consensus 65 vsavRlRsgSLrr~G~~~~eF~IP~ 89 (288)
=-|=|+..|+|-.-=+.|....+..
T Consensus 326 G~aYri~ngtL~~~~~~Y~~V~~~~ 350 (501)
T PF00974_consen 326 GPAYRIINGTLMSGDTHYKRVDIWG 350 (501)
T ss_dssp EEEEEEETTEEEEEEEEEEEEEESS
T ss_pred CceEEEecCcEEEEEEEEEEEeccC
Confidence 4577888888765546666655443
No 45
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=34.02 E-value=68 Score=24.83 Aligned_cols=32 Identities=22% Similarity=0.300 Sum_probs=15.8
Q ss_pred hHHHHHHHHHHHHHHhhhhhh-----HHHHHHHHHhc
Q 023060 223 LGIGGFILIGYVVIASVKVLK-----AKKIQVMEKQA 254 (288)
Q Consensus 223 ~G~~glvlL~~lv~~~vr~~r-----~~ki~eMEr~A 254 (288)
+++..++|..+++..+.|.+| .+-+++||++.
T Consensus 6 ~Aiaf~vLvi~l~~~l~~l~~~l~~~~~ti~~l~~~~ 42 (90)
T PF06103_consen 6 AAIAFAVLVIFLIKVLKKLKKTLDEVNKTIDTLQEQV 42 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 344444445555555555544 34444555544
No 46
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=33.16 E-value=39 Score=23.84 Aligned_cols=15 Identities=20% Similarity=0.372 Sum_probs=6.6
Q ss_pred CceEEEEe-ehhhHHH
Q 023060 212 GQWKLWAI-GIVLGIG 226 (288)
Q Consensus 212 ~~wk~wvi-g~v~G~~ 226 (288)
+.+...|. |+++.++
T Consensus 7 ~~~~vaIa~~VvVPV~ 22 (40)
T PF08693_consen 7 NSNTVAIAVGVVVPVG 22 (40)
T ss_pred CCceEEEEEEEEechH
Confidence 33444443 5555443
No 47
>PF14143 YrhC: YrhC-like protein
Probab=32.76 E-value=45 Score=26.19 Aligned_cols=20 Identities=20% Similarity=0.096 Sum_probs=12.7
Q ss_pred HHHHHHhhhhhh-HHHHHHHH
Q 023060 232 GYVVIASVKVLK-AKKIQVME 251 (288)
Q Consensus 232 ~~lv~~~vr~~r-~~ki~eME 251 (288)
+..+++..|.++ ++|++|+|
T Consensus 52 ~~a~~f~~rs~~~~~~L~E~e 72 (72)
T PF14143_consen 52 AGAFLFFRRSKKYQKKLEEEE 72 (72)
T ss_pred HHHHHHHHHHHHHHHHhhccC
Confidence 334445556666 78888876
No 48
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=32.02 E-value=44 Score=27.79 Aligned_cols=34 Identities=12% Similarity=0.168 Sum_probs=28.5
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhcc
Q 023060 222 VLGIGGFILIGYVVIASVKVLKAKKIQVMEKQAD 255 (288)
Q Consensus 222 v~G~~glvlL~~lv~~~vr~~r~~ki~eMEr~A~ 255 (288)
.++++++.||-++++-+..|+.++|..+|.+..+
T Consensus 3 Ll~il~llLll~l~asl~~wr~~~rq~k~~~~~~ 36 (107)
T PF15330_consen 3 LLGILALLLLLSLAASLLAWRMKQRQKKAGQYSE 36 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCC
Confidence 4488888888888888899999999999999853
No 49
>PF00791 ZU5: ZU5 domain; InterPro: IPR000906 This is a domain of unknown function, present in ZO-1 and Unc5-like netrin receptors. It is also found in different variants of ankyrin, which are responsible for attaching integral membrane proteins to cytoskeletal elements.; PDB: 4D8O_A 3G5B_A 3UD2_C 3KBT_D 3UD1_A 3KBU_D 3F59_A 2KXS_A 2KXR_A.
Probab=31.39 E-value=59 Score=26.26 Aligned_cols=62 Identities=16% Similarity=0.355 Sum_probs=36.5
Q ss_pred eeecCCCccccCcceEEEEEEeecCCcccccccC-CCceeeceeeEEEeeccCCcccCCcceeEEEecCCCeEEEcCCCc
Q 023060 84 NFHIPSRTIPVPHVKRLALVYHDFGNWSSHYYTV-PGYSMITPVIGFKVFDASNMMSRSVKKLSLNTMGKPIVIRFSNST 162 (288)
Q Consensus 84 eF~IP~gv~~~P~v~Rl~lVyqnlGNwSs~yY~~-pgY~lvsPVlGllaYdasnl~~~~~~~l~l~~~g~PI~I~F~~~~ 162 (288)
.++||||.+.++--..+-+.-.+ + ....-++ .+-+++|||+-+- +..+++ .+||.+.|++-.
T Consensus 24 ~L~IPpGAv~~~~~~~i~l~~~~--~-~~~~~~l~~~e~llSpvv~~g-----------P~gl~f---~kPV~L~iPHca 86 (103)
T PF00791_consen 24 SLSIPPGAVPKGTRIEIYLAVPR--D-DPDRPPLEEGETLLSPVVECG-----------PSGLKF---KKPVTLTIPHCA 86 (103)
T ss_dssp EEEE-TTSSSTTEEEEEEEEECS--G-CSSGGGTTTTEEESSTCEEEE-----------STTEEE---EEEEEEEEE--B
T ss_pred EEEECCCcCCCCCEEEEEEEecc--c-cccccccCCCCEEeCCEEEEE-----------CCCCeE---CCCEEEEecccc
Confidence 48899999998843444333222 0 1112345 4779999998552 233555 479999999743
No 50
>PF01788 PsbJ: PsbJ; InterPro: IPR002682 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbJ found in PSII. PsbJ is one of the most hydrophobic proteins in the thylakoid membrane, and is located in a gene cluster with PsbE, PsbF and PsbL (PsbEFJL). Both PsbJ and PsbL (IPR003372 from INTERPRO) are essential for proper assembly of the OEC. Mutations in PsbJ cause the light-harvesting antenna to remain detached from the PSII dimers []. In addition, both PsbJ and PsbL are involved in the unidirectional flow of electrons, where PsbJ regulates the forward electron flow from D2 (Qa) to the plastoquinone pool, and PsbL prevents the reduction of PSII by back electron flow from plastoquinol protecting PSII from photo-inactivation [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_J 3ARC_J 3A0B_J 3KZI_J 2AXT_J 3PRQ_J 4FBY_b 3BZ2_J 1S5L_j 3PRR_J ....
Probab=30.30 E-value=20 Score=25.33 Aligned_cols=22 Identities=36% Similarity=0.685 Sum_probs=16.9
Q ss_pred EEEEeehhhHHHHHHHHHHHHH
Q 023060 215 KLWAIGIVLGIGGFILIGYVVI 236 (288)
Q Consensus 215 k~wvig~v~G~~glvlL~~lv~ 236 (288)
-.|++|.+.|.+.+.++|++..
T Consensus 9 PLWlVgtv~G~~vi~lvglFfY 30 (40)
T PF01788_consen 9 PLWLVGTVAGIAVIGLVGLFFY 30 (40)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHhee
Confidence 4678899999888888887654
No 51
>PF12597 DUF3767: Protein of unknown function (DUF3767); InterPro: IPR022533 This group of proteins includes mitochodrial cytochrome c oxidase proteins [], and some transmembrane domain-containing proteins of unknown function known as FAM36A. Proteins in this family are typically between 112 and 199 amino acids in length.
Probab=30.22 E-value=84 Score=26.51 Aligned_cols=15 Identities=20% Similarity=0.228 Sum_probs=9.0
Q ss_pred hhhhhhHHHHHHHHH
Q 023060 238 SVKVLKAKKIQVMEK 252 (288)
Q Consensus 238 ~vr~~r~~ki~eMEr 252 (288)
..|++|++..++|++
T Consensus 86 ~Cr~~r~~~~~~~~~ 100 (118)
T PF12597_consen 86 YCRYNRRKERQQMKR 100 (118)
T ss_pred HHHHHHHHHHHHHHH
Confidence 466666666665554
No 52
>PF11166 DUF2951: Protein of unknown function (DUF2951); InterPro: IPR021337 This family of proteins has no known function. It has a highly conserved sequence.
Probab=30.20 E-value=11 Score=31.32 Aligned_cols=24 Identities=29% Similarity=0.552 Sum_probs=16.2
Q ss_pred CCceEEEEeehhhHHHHHHHHHHH
Q 023060 211 RGQWKLWAIGIVLGIGGFILIGYV 234 (288)
Q Consensus 211 ~~~wk~wvig~v~G~~glvlL~~l 234 (288)
.+-||-|++|.|+.++|.+++++|
T Consensus 69 ir~~KmwilGlvgTi~gsliia~l 92 (98)
T PF11166_consen 69 IRDIKMWILGLVGTIFGSLIIALL 92 (98)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355889997777766666555553
No 53
>KOG1631 consensus Translocon-associated complex TRAP, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.16 E-value=22 Score=33.90 Aligned_cols=26 Identities=23% Similarity=0.304 Sum_probs=21.8
Q ss_pred hhHHHHHHHHHhcccccccceEeecC
Q 023060 242 LKAKKIQVMEKQADEDLVLDTIWVGR 267 (288)
Q Consensus 242 ~r~~ki~eMEr~A~~gE~L~~~~VG~ 267 (288)
||+||+++.|.-.-..++.++.||=+
T Consensus 211 Kk~~~~~kVE~GTas~~~vd~eWip~ 236 (261)
T KOG1631|consen 211 KKTKKRRKVEVGTASKDAVDDEWIPG 236 (261)
T ss_pred hcccccceEeecccCccccccccccc
Confidence 77888888888888888888999865
No 54
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=29.41 E-value=47 Score=27.59 Aligned_cols=31 Identities=13% Similarity=0.045 Sum_probs=14.6
Q ss_pred hhHHHHHHHHHHHHHHh-hhhhhHHHHHHHHH
Q 023060 222 VLGIGGFILIGYVVIAS-VKVLKAKKIQVMEK 252 (288)
Q Consensus 222 v~G~~glvlL~~lv~~~-vr~~r~~ki~eMEr 252 (288)
++|++.++++-.++.|+ .|+|..++..+-+|
T Consensus 48 GGG~iLilIii~Lv~CC~~K~K~~~~r~~~~r 79 (98)
T PF07204_consen 48 GGGLILILIIIALVCCCRAKHKTSAARNTFHR 79 (98)
T ss_pred cchhhhHHHHHHHHHHhhhhhhhHhhhhHHHH
Confidence 34655555543333333 55554444444444
No 55
>PF04995 CcmD: Heme exporter protein D (CcmD); InterPro: IPR007078 The CcmD protein is part of a C-type cytochrome biogenesis operon []. The exact function of this protein is uncertain. It has been proposed that CcmC, CcmD and CcmE interact directly with each other, establishing a cytoplasm to periplasm haem delivery pathway for cytochrome c maturation []. This protein is found fused to CcmE in P52224 from SWISSPROT. These proteins contain a predicted transmembrane helix.; GO: 0006810 transport, 0016021 integral to membrane
Probab=29.13 E-value=1.2e+02 Score=21.25 Aligned_cols=37 Identities=5% Similarity=0.127 Sum_probs=28.2
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhHHHHHH-HHHhcccc
Q 023060 221 IVLGIGGFILIGYVVIASVKVLKAKKIQV-MEKQADED 257 (288)
Q Consensus 221 ~v~G~~glvlL~~lv~~~vr~~r~~ki~e-MEr~A~~g 257 (288)
+|.++-|+.++.+++..+.-+.++|+..+ ++++...+
T Consensus 6 yVW~sYg~t~~~l~~l~~~~~~~~r~~~~~l~~~~~r~ 43 (46)
T PF04995_consen 6 YVWSSYGVTALVLAGLIVWSLRRRRRLRKELKRLEARE 43 (46)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 56688888888888888888999999877 55554433
No 56
>PF07006 DUF1310: Protein of unknown function (DUF1310); InterPro: IPR010738 This family consists of several hypothetical proteins of around 125 residues in length. Members of this family seem to be specific to Listeria and Streptococcus species. The function of this family is unknown.
Probab=28.58 E-value=24 Score=29.98 Aligned_cols=23 Identities=13% Similarity=0.007 Sum_probs=16.2
Q ss_pred hhhhhhHHHHHHHHHhccccccc
Q 023060 238 SVKVLKAKKIQVMEKQADEDLVL 260 (288)
Q Consensus 238 ~vr~~r~~ki~eMEr~A~~gE~L 260 (288)
.....++++-+||.+-++..|+=
T Consensus 20 ~~~~~~~~~~~eMi~Iv~S~E~k 42 (122)
T PF07006_consen 20 GFYMDQQKEKQEMIQIVKSEEAK 42 (122)
T ss_pred EEEEEEhHHHHHHHHHhcCHHHH
Confidence 34555566677899988888763
No 57
>CHL00108 psbJ photosystem II protein J
Probab=28.57 E-value=18 Score=25.57 Aligned_cols=23 Identities=39% Similarity=0.660 Sum_probs=16.9
Q ss_pred ceEEEEeehhhHHHHHHHHHHHH
Q 023060 213 QWKLWAIGIVLGIGGFILIGYVV 235 (288)
Q Consensus 213 ~wk~wvig~v~G~~glvlL~~lv 235 (288)
+--.|++|.+.|.+.+.++|++.
T Consensus 7 RiPLWlVgtv~G~~vi~~vgiFf 29 (40)
T CHL00108 7 RIPLWLIGTVAGIAVIGLLGIFF 29 (40)
T ss_pred cccEEeeeehhhHhHHheeeeEE
Confidence 34578999999887777776543
No 58
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=27.54 E-value=68 Score=33.21 Aligned_cols=37 Identities=22% Similarity=0.351 Sum_probs=25.6
Q ss_pred eehhhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhcc
Q 023060 219 IGIVLGIGGFILIGYVVIASVKVLKAKKIQVMEKQAD 255 (288)
Q Consensus 219 ig~v~G~~glvlL~~lv~~~vr~~r~~ki~eMEr~A~ 255 (288)
+.+++|++.++++++++..+.|-+..++|.++|-+-.
T Consensus 3 ~~~ii~i~ii~i~~~~~~~~~rr~~~~~i~~Le~~k~ 39 (569)
T PRK04778 3 IYLIIAIVVIIIIAYLAGLILRKRNYKRIDELEERKQ 39 (569)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466777777777776666677666888888876543
No 59
>COG4890 Predicted outer membrane lipoprotein [Function unknown]
Probab=27.21 E-value=1e+02 Score=21.40 Aligned_cols=29 Identities=17% Similarity=0.366 Sum_probs=15.4
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHhccccc
Q 023060 230 LIGYVVIASVKVLKAKKIQVMEKQADEDL 258 (288)
Q Consensus 230 lL~~lv~~~vr~~r~~ki~eMEr~A~~gE 258 (288)
+||+++.|+.-.-..--.|-||-++...|
T Consensus 7 iLG~lLAcAFgiinAlwlEh~e~~~~~~e 35 (37)
T COG4890 7 ILGLLLACAFGIINALWLEHMEDRARKRE 35 (37)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 34444545444444445566766665544
No 60
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=26.93 E-value=87 Score=27.45 Aligned_cols=22 Identities=27% Similarity=0.401 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHhhhhhhHHH
Q 023060 225 IGGFILIGYVVIASVKVLKAKK 246 (288)
Q Consensus 225 ~~glvlL~~lv~~~vr~~r~~k 246 (288)
++.++++.++++...|.+|-+|
T Consensus 9 ~l~iilli~~~~~~~kl~kl~r 30 (151)
T PF14584_consen 9 VLVIILLILIIILNIKLRKLKR 30 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555566678887444
No 61
>PRK02565 photosystem II reaction center protein J; Provisional
Probab=25.93 E-value=23 Score=24.96 Aligned_cols=23 Identities=26% Similarity=0.687 Sum_probs=16.9
Q ss_pred ceEEEEeehhhHHHHHHHHHHHH
Q 023060 213 QWKLWAIGIVLGIGGFILIGYVV 235 (288)
Q Consensus 213 ~wk~wvig~v~G~~glvlL~~lv 235 (288)
+--.|+++.+.|.+.+.++|++.
T Consensus 6 riPLWlV~tv~G~~vi~~vgiFf 28 (39)
T PRK02565 6 RIPLWLVATVAGMGVIFVVGLFF 28 (39)
T ss_pred ccceeehhhhhHHHHHhheeeEE
Confidence 34578999999887777777543
No 62
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=25.08 E-value=40 Score=30.05 Aligned_cols=33 Identities=18% Similarity=0.059 Sum_probs=21.0
Q ss_pred CceEEEEeehhhHHHHHHHHHHHHHHhhhhhhHH
Q 023060 212 GQWKLWAIGIVLGIGGFILIGYVVIASVKVLKAK 245 (288)
Q Consensus 212 ~~wk~wvig~v~G~~glvlL~~lv~~~vr~~r~~ 245 (288)
+---..++| |+|++.|++++++..+++|-||+.
T Consensus 49 nIVIGvVVG-VGg~ill~il~lvf~~c~r~kktd 81 (154)
T PF04478_consen 49 NIVIGVVVG-VGGPILLGILALVFIFCIRRKKTD 81 (154)
T ss_pred cEEEEEEec-ccHHHHHHHHHhheeEEEecccCc
Confidence 344444456 555666788888877777666653
No 63
>PRK10489 enterobactin exporter EntS; Provisional
Probab=23.60 E-value=40 Score=31.73 Aligned_cols=21 Identities=14% Similarity=0.116 Sum_probs=15.0
Q ss_pred HHhhhhhhHHHHHHHHHhccc
Q 023060 236 IASVKVLKAKKIQVMEKQADE 256 (288)
Q Consensus 236 ~~~vr~~r~~ki~eMEr~A~~ 256 (288)
...++..|+++.||||-.|.+
T Consensus 396 ~~~~~~~~~~~~~~~~~~~~~ 416 (417)
T PRK10489 396 LLVLGELRRFRQTPPEVDASD 416 (417)
T ss_pred HHhcccccccccccccCCCCC
Confidence 334577778888889877754
No 64
>PF11669 WBP-1: WW domain-binding protein 1; InterPro: IPR021684 This family of proteins represents WBP-1, a ligand of the WW domain of Yes-associated protein. This protein has a proline-rich domain. WBP-1 does not bind to the SH3 domain [].
Probab=23.06 E-value=1.5e+02 Score=24.18 Aligned_cols=21 Identities=14% Similarity=0.343 Sum_probs=13.3
Q ss_pred hhhhHHHHHHHHHhccccccc
Q 023060 240 KVLKAKKIQVMEKQADEDLVL 260 (288)
Q Consensus 240 r~~r~~ki~eMEr~A~~gE~L 260 (288)
++++|.++++=+|+.|.+++-
T Consensus 42 ~~r~r~~~~~q~rq~e~~~~~ 62 (102)
T PF11669_consen 42 HRRRRRRLQQQQRQREINLIA 62 (102)
T ss_pred HHHHHHhhhhhhccccccccc
Confidence 334456777777777766644
No 65
>PF15103 G0-G1_switch_2: G0/G1 switch protein 2
Probab=23.06 E-value=64 Score=27.06 Aligned_cols=26 Identities=35% Similarity=0.548 Sum_probs=20.5
Q ss_pred CCCCCCceEEEEeehhhHHHHHHHHHH
Q 023060 207 LKRKRGQWKLWAIGIVLGIGGFILIGY 233 (288)
Q Consensus 207 ~~~~~~~wk~wvig~v~G~~glvlL~~ 233 (288)
.+++++.-|+.++|+|+.++|+++ |+
T Consensus 17 QkPsrkmvKlYvLGSvLA~~Gvv~-GL 42 (102)
T PF15103_consen 17 QKPSRKMVKLYVLGSVLAFFGVVI-GL 42 (102)
T ss_pred cCCCCCeEeeehhhhHHHHHHHHH-HH
Confidence 367788889999999998888754 44
No 66
>PF05620 DUF788: Protein of unknown function (DUF788); InterPro: IPR008506 This family consists of several eukaryotic proteins of unknown function.
Probab=23.05 E-value=41 Score=29.50 Aligned_cols=16 Identities=31% Similarity=0.482 Sum_probs=11.6
Q ss_pred hhhHHHHHHHHHhccc
Q 023060 241 VLKAKKIQVMEKQADE 256 (288)
Q Consensus 241 ~~r~~ki~eMEr~A~~ 256 (288)
-+++||.++|||+++.
T Consensus 155 ~~~sKrq~K~err~~K 170 (170)
T PF05620_consen 155 EAKSKRQEKMERRANK 170 (170)
T ss_pred ccccHHHHHHHHhccC
Confidence 3457777889998763
No 67
>PF12868 DUF3824: Domain of unknwon function (DUF3824); InterPro: IPR024436 This repeating domain is proline-rich but its function is unknown.
Probab=22.66 E-value=1.1e+02 Score=26.51 Aligned_cols=10 Identities=10% Similarity=0.165 Sum_probs=5.8
Q ss_pred HHHHhccccc
Q 023060 249 VMEKQADEDL 258 (288)
Q Consensus 249 eMEr~A~~gE 258 (288)
++||+-++.+
T Consensus 38 er~r~r~~~~ 47 (137)
T PF12868_consen 38 ERERRRHDHR 47 (137)
T ss_pred cccccccccc
Confidence 3666665555
No 68
>smart00019 SF_P Pulmonary surfactant proteins. Pulmonary surfactant associated proteins promote alveolar stability by lowering the surface tension at the air-liquid interface in the peripheral air spaces. SP-C, a component of surfactant, is a highly hydrophobic peptide of 35 amino acid residues which is processed from a larger precursor protein. SP-C is post-translationally modified by the covalent attachment of two palmitoyl groups on two adjacent cysteines
Probab=22.39 E-value=2.1e+02 Score=25.95 Aligned_cols=65 Identities=12% Similarity=0.154 Sum_probs=38.1
Q ss_pred ccCceeEeecCCeeEEEEeCCCCCCceEEEEeehhhHHHHHHHHHHHHHHh-hhhhhHHHHHHHHHhcc
Q 023060 188 TLANVCFSQDQGHFSIVVPLKRKRGQWKLWAIGIVLGIGGFILIGYVVIAS-VKVLKAKKIQVMEKQAD 255 (288)
Q Consensus 188 ~~~nvC~~~~~GHfslVV~~~~~~~~wk~wvig~v~G~~glvlL~~lv~~~-vr~~r~~ki~eMEr~A~ 255 (288)
.+|..-+.--+|.|+|=.-+..-| ++.++.+|+=++.++++|.++..+ ...|....+-||--.+-
T Consensus 11 e~PPdYSa~P~gr~~iPccp~~lK---rLlivVvVvVlvVvVivGaLLMGLHMSQKHTEmvleMSi~~p 76 (191)
T smart00019 11 ESPPDYSAAPRGRFGIPCCPVHLK---RLLIVVVVVVLVVVVIVGALLMGLHMSQKHTEMVLEMSIGAP 76 (191)
T ss_pred cCCCccccCCCCcccCccccccce---eEEEEEeeehhhHHHHHHHHHHhhhhhhhhHHHHHHhhhcCc
Confidence 344444555667776644322222 344444555566677788777766 66677777778865543
No 69
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=22.33 E-value=1.1e+02 Score=24.91 Aligned_cols=19 Identities=32% Similarity=0.443 Sum_probs=11.8
Q ss_pred HHHHHhcccccccceEeec
Q 023060 248 QVMEKQADEDLVLDTIWVG 266 (288)
Q Consensus 248 ~eMEr~A~~gE~L~~~~VG 266 (288)
+++|+.+++.|+=+....|
T Consensus 29 ~~~~~~~~~~~v~~~~~~g 47 (95)
T PF07172_consen 29 EETEKEEEENEVQDDKYGG 47 (95)
T ss_pred hhccccccCCCCCccccCC
Confidence 6777777777655544433
No 70
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=22.31 E-value=1.1e+02 Score=31.87 Aligned_cols=33 Identities=24% Similarity=0.318 Sum_probs=21.9
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhc
Q 023060 222 VLGIGGFILIGYVVIASVKVLKAKKIQVMEKQA 254 (288)
Q Consensus 222 v~G~~glvlL~~lv~~~vr~~r~~ki~eMEr~A 254 (288)
++|++.++++++++..+.|-+..++|.++|-+-
T Consensus 2 iI~iivi~l~~~~~~~~~rk~~~k~i~~Le~~k 34 (560)
T PF06160_consen 2 IIGIIVIVLIIYIIGYIYRKRYYKEIDELEERK 34 (560)
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346666666666666666666688888887653
No 71
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=22.27 E-value=43 Score=27.15 Aligned_cols=27 Identities=19% Similarity=0.069 Sum_probs=11.9
Q ss_pred ceEEEEeehhhHHH-HH-HHHHHHHHHhh
Q 023060 213 QWKLWAIGIVLGIG-GF-ILIGYVVIASV 239 (288)
Q Consensus 213 ~wk~wvig~v~G~~-gl-vlL~~lv~~~v 239 (288)
..-..|.|.++|++ ++ +|+++++.+.+
T Consensus 63 ls~gaiagi~vg~~~~v~~lv~~l~w~f~ 91 (96)
T PTZ00382 63 LSTGAIAGISVAVVAVVGGLVGFLCWWFV 91 (96)
T ss_pred cccccEEEEEeehhhHHHHHHHHHhheeE
Confidence 33345556555533 33 23344443333
No 72
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=22.17 E-value=89 Score=25.13 Aligned_cols=11 Identities=27% Similarity=0.410 Sum_probs=1.7
Q ss_pred hhhhhHHHHHH
Q 023060 239 VKVLKAKKIQV 249 (288)
Q Consensus 239 vr~~r~~ki~e 249 (288)
.|.||.+||.+
T Consensus 31 rk~~rqrkId~ 41 (81)
T PF00558_consen 31 RKIKRQRKIDR 41 (81)
T ss_dssp --------CHH
T ss_pred HHHHHHHhHHH
Confidence 35555666655
No 73
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=22.12 E-value=30 Score=33.56 Aligned_cols=40 Identities=8% Similarity=0.131 Sum_probs=0.0
Q ss_pred CCCceEEEEeehhhHH---HHHHHHHHHHHHhhhhhhHHHHHH
Q 023060 210 KRGQWKLWAIGIVLGI---GGFILIGYVVIASVKVLKAKKIQV 249 (288)
Q Consensus 210 ~~~~wk~wvig~v~G~---~glvlL~~lv~~~vr~~r~~ki~e 249 (288)
+.+.-..|...++..+ +.|+++++++.++.|.||+-||.-
T Consensus 138 ~~s~~d~yL~T~IpaVVI~~iLLIA~iIa~icyrrkR~GK~~~ 180 (290)
T PF05454_consen 138 KSSFSDDYLHTFIPAVVIAAILLIAGIIACICYRRKRKGKMSL 180 (290)
T ss_dssp -------------------------------------------
T ss_pred CcccccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccc
Confidence 3444455555444332 122234444455566555555543
No 74
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=22.03 E-value=47 Score=24.24 Aligned_cols=24 Identities=25% Similarity=0.513 Sum_probs=11.5
Q ss_pred HHHHHHHhhhhhhHHHH--HHHHHhc
Q 023060 231 IGYVVIASVKVLKAKKI--QVMEKQA 254 (288)
Q Consensus 231 L~~lv~~~vr~~r~~ki--~eMEr~A 254 (288)
.|+++.--+|+-|.||- .|.|++-
T Consensus 21 iGl~IyQkikqIrgKkk~KKeie~ke 46 (49)
T PF11044_consen 21 IGLSIYQKIKQIRGKKKEKKEIERKE 46 (49)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHh
Confidence 55666555555443332 3355543
No 75
>PRK10697 DNA-binding transcriptional activator PspC; Provisional
Probab=21.78 E-value=65 Score=27.41 Aligned_cols=14 Identities=21% Similarity=0.494 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHhh
Q 023060 226 GGFILIGYVVIASV 239 (288)
Q Consensus 226 ~glvlL~~lv~~~v 239 (288)
++..++.++++|++
T Consensus 49 ~~~~~~~Yi~l~~~ 62 (118)
T PRK10697 49 FVFTLVAYIILSFA 62 (118)
T ss_pred chHHHHHHHHHHHh
Confidence 34556666666654
No 76
>PRK11677 hypothetical protein; Provisional
Probab=21.68 E-value=34 Score=29.60 Aligned_cols=9 Identities=33% Similarity=0.512 Sum_probs=4.0
Q ss_pred HHHHHHHHh
Q 023060 230 LIGYVVIAS 238 (288)
Q Consensus 230 lL~~lv~~~ 238 (288)
++|+++...
T Consensus 15 iiG~~~~R~ 23 (134)
T PRK11677 15 IIGAVAMRF 23 (134)
T ss_pred HHHHHHHhh
Confidence 345544443
No 77
>PF02158 Neuregulin: Neuregulin family; InterPro: IPR002154 Neuregulins are a sub-family of EGF-like molecules that have been shown to play multiple essential roles in vertebrate embryogenesis including: cardiac development, Schwann cell and oligodendrocyte differentiation, some aspects of neuronal development, as well as the formation of neuromuscular synapses [, ]. Included in the family are heregulin; neu differentiation factor; acetylcholine receptor synthesis stimulator; glial growth factor; and sensory and motor-neuron derived factor []. Multiple family members are generated by alternate splicing or by use of several cell type-specific transcription initiation sites. In general, they bind to and activate the erbB family of receptor tyrosine kinases (erbB2 (HER2), erbB3 (HER3), and erbB4 (HER4)), functioning both as heterodimers and homodimers. The transmembrane forms of neuregulin 1 (NRG1) are present within synaptic vesicles, including those containing glutamate []. After exocytosis, NRG1 is in the presynaptic membrane, where the ectodomain of NRG1 may be cleaved off. The ectodomain then migrates across the synaptic cleft and binds to and activates a member of the EGF-receptor family on the postsynaptic membrane. This has been shown to increase the expression of certain glutamate-receptor subunits. NRG1 appears to signal for glutamate-receptor subunit expression, localisation, and /or phosphorylation facilitating subsequent glutamate transmission. The NRG1 gene has been identified as a potential gene determining susceptibility to schizophrenia by a combination of genetic linkage and association approaches []. ; GO: 0005102 receptor binding, 0009790 embryo development; PDB: 1HRE_A 1HAE_A 1HAF_A 1HRF_A.
Probab=21.67 E-value=31 Score=34.98 Aligned_cols=37 Identities=22% Similarity=0.310 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHH-h-hhhhh-HHHHHHHHHhcccccccc
Q 023060 225 IGGFILIGYVVIA-S-VKVLK-AKKIQVMEKQADEDLVLD 261 (288)
Q Consensus 225 ~~glvlL~~lv~~-~-vr~~r-~~ki~eMEr~A~~gE~L~ 261 (288)
++||+++|+++++ + .|-|| +|||++==|+...++...
T Consensus 16 cvaLlVVGi~Cvv~aYCKTKKQRkklh~hLkqs~~~~~~n 55 (404)
T PF02158_consen 16 CVALLVVGIVCVVDAYCKTKKQRKKLHEHLKQSQRSKNYN 55 (404)
T ss_dssp ----------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhcccchhh
Confidence 3556667777766 5 67776 778887445555555544
No 78
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=21.59 E-value=2.2e+02 Score=28.74 Aligned_cols=74 Identities=23% Similarity=0.367 Sum_probs=49.4
Q ss_pred CcccccccCC-C-----ceeeceeeEEEeeccCCcccCCcceeEEEecCCCeEEEcCCCccC-------CCCCCcceeEE
Q 023060 109 NWSSHYYTVP-G-----YSMITPVIGFKVFDASNMMSRSVKKLSLNTMGKPIVIRFSNSTLS-------DGMVSKARCAI 175 (288)
Q Consensus 109 NwSs~yY~~p-g-----Y~lvsPVlGllaYdasnl~~~~~~~l~l~~~g~PI~I~F~~~~~~-------~~~~~~~~Cv~ 175 (288)
+||-..+++. | .++=|||.|-+--+.... .-+-.-....|..|+|+|-+.. ..-...+.|+.
T Consensus 86 D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n-----~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~ 160 (405)
T KOG1273|consen 86 DWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRN-----KCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGV 160 (405)
T ss_pred CceeEEEeccCCCceeEEEccCccceeeeccccCC-----eEEEEEecCCcEEEEecCCceeeccCCCcccccccccccc
Confidence 6888888772 3 467799999988877532 2222222356999999973311 11346679999
Q ss_pred EccCCceEEccc
Q 023060 176 FSSNGTLHLGEI 187 (288)
Q Consensus 176 F~~~G~~~~~~~ 187 (288)
||..|+--++.-
T Consensus 161 fdr~g~yIitGt 172 (405)
T KOG1273|consen 161 FDRRGKYIITGT 172 (405)
T ss_pred ccCCCCEEEEec
Confidence 999888777643
No 79
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=21.26 E-value=30 Score=26.73 Aligned_cols=7 Identities=14% Similarity=0.097 Sum_probs=0.5
Q ss_pred hhhhhhH
Q 023060 238 SVKVLKA 244 (288)
Q Consensus 238 ~vr~~r~ 244 (288)
+-|.+||
T Consensus 33 iyR~rkk 39 (64)
T PF01034_consen 33 IYRMRKK 39 (64)
T ss_dssp ----S--
T ss_pred HHHHHhc
Confidence 3455444
Done!