Query 023060
Match_columns 288
No_of_seqs 64 out of 66
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 15:40:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023060.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023060hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dlo_A Brain-specific angiogen 90.9 3.2 0.00011 39.2 12.9 103 84-206 244-370 (382)
2 3g5b_A Netrin receptor UNC5B; 85.3 5.5 0.00019 38.6 10.6 118 71-207 12-146 (405)
3 2knc_B Integrin beta-3; transm 81.6 1.1 3.9E-05 34.1 3.4 26 228-253 21-50 (79)
4 2ks1_B Epidermal growth factor 75.7 1.2 4E-05 30.8 1.6 24 220-243 16-39 (44)
5 2l2t_A Receptor tyrosine-prote 74.2 1.3 4.4E-05 30.7 1.5 23 220-242 15-37 (44)
6 3ud1_A Ankyrin-1; beta sandwic 73.9 15 0.00051 34.8 9.2 126 59-206 2-161 (326)
7 2jwa_A Receptor tyrosine-prote 69.8 0.94 3.2E-05 31.4 0.0 22 219-240 15-36 (44)
8 1q90_G Cytochrome B6F complex 69.5 3.1 0.00011 27.9 2.5 29 220-248 8-36 (37)
9 2l8s_A Integrin alpha-1; trans 69.0 0.18 6E-06 36.5 -3.9 13 239-251 36-48 (54)
10 2knc_B Integrin beta-3; transm 65.8 4.2 0.00014 31.0 2.9 20 219-238 15-38 (79)
11 1vf5_G Protein PET G; photosyn 61.6 3.9 0.00013 27.4 1.8 29 219-247 7-35 (37)
12 2jwa_A Receptor tyrosine-prote 57.6 4.1 0.00014 28.2 1.4 27 222-248 15-41 (44)
13 2klu_A T-cell surface glycopro 56.0 1.4 5E-05 33.2 -1.2 19 225-243 18-36 (70)
14 2knc_A Integrin alpha-IIB; tra 51.4 0.94 3.2E-05 32.6 -2.7 13 226-238 21-33 (54)
15 2kxs_A Tight junction protein 48.7 21 0.00072 30.2 4.7 61 84-161 39-102 (146)
16 2hjj_A Hypothetical protein YK 45.5 18 0.00063 28.3 3.5 34 190-223 25-59 (87)
17 1cd1_A CD1, MCD1D.1; immunolog 41.8 14 0.00049 33.4 2.8 80 123-206 184-275 (315)
18 4dlq_A Latrophilin-1; GAIN dom 39.0 46 0.0016 31.0 5.9 70 99-180 269-352 (381)
19 2kxr_A Tight junction protein 38.5 35 0.0012 27.7 4.4 73 71-162 13-89 (118)
20 3f59_A Ankyrin-1; beta sandwic 36.5 46 0.0016 28.6 5.0 69 58-130 1-72 (161)
21 1s7q_A H-2KB, H-2 class I hist 33.8 20 0.00069 33.2 2.5 73 123-200 183-266 (348)
22 1q55_A EP-cadherin, C-cadherin 32.7 12 0.00041 39.0 0.9 21 219-239 708-728 (880)
23 3azd_A Short alpha-tropomyosin 29.5 23 0.00077 23.3 1.5 15 244-258 10-24 (37)
24 3arc_J Photosystem II reaction 29.4 14 0.00047 25.2 0.4 22 215-236 9-30 (40)
25 2k1k_A Ephrin type-A receptor 20.4 53 0.0018 21.6 1.9 17 220-236 15-32 (38)
No 1
>4dlo_A Brain-specific angiogenesis inhibitor 3; GAIN domain, includes GPS motif, autoproteolytic fold, extra signaling protein; HET: NAG FUL; 2.30A {Homo sapiens}
Probab=90.94 E-value=3.2 Score=39.16 Aligned_cols=103 Identities=14% Similarity=0.203 Sum_probs=64.4
Q ss_pred eeecCCCccccCc--------ceEE-EEEEeecCCcccccccC--CCceeeceeeEEEeeccCCcccCCcceeEEEecCC
Q 023060 84 NFHIPSRTIPVPH--------VKRL-ALVYHDFGNWSSHYYTV--PGYSMITPVIGFKVFDASNMMSRSVKKLSLNTMGK 152 (288)
Q Consensus 84 eF~IP~gv~~~P~--------v~Rl-~lVyqnlGNwSs~yY~~--pgY~lvsPVlGllaYdasnl~~~~~~~l~l~~~g~ 152 (288)
...||......+- +..+ .+.|.+||+ +.+. ....+-++|++.-..+..+ . ..+
T Consensus 244 ~V~ip~~~~~~~~~~~~~~~~~~v~~~v~y~~lg~----~L~~~~~~~~lns~Vis~sv~~~~~-------~-----l~~ 307 (382)
T 4dlo_A 244 RVVIPKSIFTPVSSKELDESSVFVLGAVLYKNLDL----ILPTLRNYTVINSKIIVVTIRPEPK-------T-----TDS 307 (382)
T ss_dssp EEEECGGGGSCCCC--CCTTCEEEEEEEEESSGGG----TSCCCSTTEEECSCEEEEEEESCCC-------C-----TTC
T ss_pred eEEcCHHHhcccccccCCCCceEEEEEEEECChHH----hcCCCCCCeeeeceEEEEEcCCCCc-------c-----cCC
Confidence 3667765553221 2222 346999986 2333 2367889999998875321 1 236
Q ss_pred CeEEEcCCCccCCCCCCcceeEEEccCCc-------------eEEcccccCceeEeecCCeeEEEEe
Q 023060 153 PIVIRFSNSTLSDGMVSKARCAIFSSNGT-------------LHLGEITLANVCFSQDQGHFSIVVP 206 (288)
Q Consensus 153 PI~I~F~~~~~~~~~~~~~~Cv~F~~~G~-------------~~~~~~~~~nvC~~~~~GHfslVV~ 206 (288)
||.|.|.+... +...+.||.+|.+.. +.-++ ..-.+|.-....+|+|...
T Consensus 308 pV~i~f~h~~~---~~~~~~Cv~W~~~~~~~~~g~Ws~~GC~~~~~~-~~~t~C~C~Hlt~FavLm~ 370 (382)
T 4dlo_A 308 FLEIELAHLAN---GTLNPYCVLWDDSKTNESLGTWSTQGCKTVLTD-ASHTKCLCDRLSTFAILAQ 370 (382)
T ss_dssp CEEEEEECSCS---SCEEEEEEEEECC---CTTCEEECTTEEEEEEE-TTEEEEEESSCSEEEEEEE
T ss_pred CEEEEEEeccC---CCCCceEeeeCCcCCCCCCCCccccccEEEEeC-CCEEEEECCCCchHHhhcc
Confidence 99999999753 345679999997641 11111 1234899889999999875
No 2
>3g5b_A Netrin receptor UNC5B; ZU5, death domain, UPA, apoptosis, developmental protein, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; 2.00A {Rattus norvegicus}
Probab=85.31 E-value=5.5 Score=38.60 Aligned_cols=118 Identities=16% Similarity=0.164 Sum_probs=60.5
Q ss_pred ecccccccCCccceeecCCCccccCcceEEEEEE-eecCCcccccccC-CCceeeceeeEEEeeccCCcccCCcceeEEE
Q 023060 71 RSRRLWNRGANFCNFHIPSRTIPVPHVKRLALVY-HDFGNWSSHYYTV-PGYSMITPVIGFKVFDASNMMSRSVKKLSLN 148 (288)
Q Consensus 71 RsgSLrr~G~~~~eF~IP~gv~~~P~v~Rl~lVy-qnlGNwSs~yY~~-pgY~lvsPVlGllaYdasnl~~~~~~~l~l~ 148 (288)
|.|.|+-..... ...||+|.++++-...+-|+= ++. +.--++ .|.+++|||+=.- +..+.
T Consensus 12 ~GG~L~lp~tGV-sLlIP~GAi~~g~~~eiyl~v~~~~----~~~p~l~~~etllSPvV~cG-----------P~g~~-- 73 (405)
T 3g5b_A 12 LGGRLTIPGTGV-SLLVPNGAIPQGKFYDLYLRINKTE----STLPLSEGSQTVLSPSVTCG-----------PTGLL-- 73 (405)
T ss_dssp TCEEEEETTTTE-EEEECTTSSCTTCCEEEEEEECCGG----GGGGGCSTTEEECSCCEEEE-----------CSSCC--
T ss_pred CCCEEEecCCCe-EEEECCCcCCCCCEEEEEEEEeccc----CCCCCCCCCccccCceEEEC-----------CCCCc--
Confidence 344454433222 388999999999665554433 332 223355 4799999998321 12222
Q ss_pred ecCCCeEEEcCCCccCCCCCCcceeEEEccCCc----eEEccc---------ccCceeE--eecCCeeEEEEeC
Q 023060 149 TMGKPIVIRFSNSTLSDGMVSKARCAIFSSNGT----LHLGEI---------TLANVCF--SQDQGHFSIVVPL 207 (288)
Q Consensus 149 ~~g~PI~I~F~~~~~~~~~~~~~~Cv~F~~~G~----~~~~~~---------~~~nvC~--~~~~GHfslVV~~ 207 (288)
--+|+.+.|++-.......-....-.-|..|. +++.+- .....|+ +.+.|+|++|.+.
T Consensus 74 -f~~PViL~ipHcA~~~~~~W~i~l~~~~~~~~W~ev~~~geE~~~t~~y~qld~~~c~i~~~~lg~y~lvGe~ 146 (405)
T 3g5b_A 74 -LCRPVVLTVPHCAEVIAGDWIFQLKTQAHQGHWEEVVTLDEETLNTPCYCQLEAKSCHILLDQLGTYVFTGES 146 (405)
T ss_dssp -CSSCEEEEEECCBCCSSSCCEEEEEEESSTTCEEEEEETTCCCTTCSEEEEECSSEEEEEESSCEEEEEEEEC
T ss_pred -cCCCeEEeecCCCCCCCCcCEEEEecCCCCCCccCccccCCccCCcceEEEecCCcEEEEhhcCcceEEEccc
Confidence 23677777776532221111111222222221 111111 1134454 5688999999985
No 3
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=81.64 E-value=1.1 Score=34.12 Aligned_cols=26 Identities=19% Similarity=0.368 Sum_probs=11.5
Q ss_pred HHHHHHHHHHhh----hhhhHHHHHHHHHh
Q 023060 228 FILIGYVVIASV----KVLKAKKIQVMEKQ 253 (288)
Q Consensus 228 lvlL~~lv~~~v----r~~r~~ki~eMEr~ 253 (288)
++|+|++++++. ....||+-+++|++
T Consensus 21 illiGllllliwk~~~~i~DrrE~~kFEkE 50 (79)
T 2knc_B 21 ILLIGLAALLIWKLLITIHDRKEFAKFEEE 50 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344454444333 33444555555543
No 4
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=75.65 E-value=1.2 Score=30.82 Aligned_cols=24 Identities=8% Similarity=0.069 Sum_probs=13.1
Q ss_pred ehhhHHHHHHHHHHHHHHhhhhhh
Q 023060 220 GIVLGIGGFILIGYVVIASVKVLK 243 (288)
Q Consensus 220 g~v~G~~glvlL~~lv~~~vr~~r 243 (288)
|+|+|++++++++++++...|.+|
T Consensus 16 gVVgGv~~~~ii~~~~~~~~RRr~ 39 (44)
T 2ks1_B 16 GMVGALLLLLVVALGIGLFMRRRH 39 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred ehhHHHHHHHHHHHHHHHHhhhhH
Confidence 455567766666655544444333
No 5
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=74.23 E-value=1.3 Score=30.72 Aligned_cols=23 Identities=17% Similarity=0.366 Sum_probs=12.5
Q ss_pred ehhhHHHHHHHHHHHHHHhhhhh
Q 023060 220 GIVLGIGGFILIGYVVIASVKVL 242 (288)
Q Consensus 220 g~v~G~~glvlL~~lv~~~vr~~ 242 (288)
|+|+|++++++++++++...|.+
T Consensus 15 gVVgGv~~v~ii~~~~~~~~RRR 37 (44)
T 2l2t_A 15 GVIGGLFILVIVGLTFAVYVRRK 37 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred eehHHHHHHHHHHHHHHHHhhhh
Confidence 45556666666665544444433
No 6
>3ud1_A Ankyrin-1; beta sandwich, ZU5, adapter protein, spectrin binding, cytos protein binding; 2.00A {Homo sapiens} PDB: 3ud2_C
Probab=73.90 E-value=15 Score=34.81 Aligned_cols=126 Identities=19% Similarity=0.228 Sum_probs=75.1
Q ss_pred CCCCceEEE-EEEeccccc---ccCCccceeecCCCccccCcceEEEEEEeecCCcccccccC-CCceeeceeeEEEeec
Q 023060 59 NLSGMSVSI-VRLRSRRLW---NRGANFCNFHIPSRTIPVPHVKRLALVYHDFGNWSSHYYTV-PGYSMITPVIGFKVFD 133 (288)
Q Consensus 59 NlSGi~vsa-vRlRsgSLr---r~G~~~~eF~IP~gv~~~P~v~Rl~lVyqnlGNwSs~yY~~-pgY~lvsPVlGllaYd 133 (288)
|-||.=||- |.=|.|+++ .-|+ .|.||||.+..|- |+-.-+-|--..+ .--++ .|=.|+|+|+-+--.+
T Consensus 2 ~~~gflvsF~VdarGg~~~~~~~~Gv---rl~IPpgA~~~pt--rI~crl~~p~~~~-~~ppL~~gE~LvS~VlelgP~G 75 (326)
T 3ud1_A 2 NATGFLVSFMVDARGGSMRGSRHNGL---RVVIPPRTCAAPT--RITCRLVKPQKLS-TPPPLAEEEGLASRIIALGPTG 75 (326)
T ss_dssp ---CEEEEEEECTTCEEEECCTTTCC---EEEECTTSCSSCE--EEEEEEECGGGCS-SCCCCCTTCEECSCEEEEESTT
T ss_pred CccceEEEEEEeCCCCEEecccCCCE---EEEECCCCCCCCe--EEEEEEecccccC-CCCccCCCcccccceEEeccCC
Confidence 556665553 456788885 3444 4889999999994 6655555521101 11345 5899999999776443
Q ss_pred cCCcccCCcceeEEEecCCCeEEEcCCCccCCCCCCcceeEEEccCCceEEc--------------------------cc
Q 023060 134 ASNMMSRSVKKLSLNTMGKPIVIRFSNSTLSDGMVSKARCAIFSSNGTLHLG--------------------------EI 187 (288)
Q Consensus 134 asnl~~~~~~~l~l~~~g~PI~I~F~~~~~~~~~~~~~~Cv~F~~~G~~~~~--------------------------~~ 187 (288)
+ .+ .+||.|.+++....... ..-..|.-..||. +=+ ++
T Consensus 76 ~-----------~F---~~PV~l~iPh~a~~~~~-~REivVlrSd~G~-~W~eh~~~~~~~~l~~~l~g~~~~~~sle~~ 139 (326)
T 3ud1_A 76 A-----------QF---LSPVIVEIPHFASHGRG-DRELVVLRSENGS-VWKEHRSRYGESYLDQILNGMDEELGSLEEL 139 (326)
T ss_dssp C-----------EE---EEEEEEEEECCCSCCSS-SEEEEEEEESSSS-CCEECCCSSCGGGHHHHTTTCCCCCCCHHHH
T ss_pred c-----------cC---cccEEEEeccccccCCC-ceEEEEEEecCCC-cceecccccchhHHHhhhccccccccchhhh
Confidence 2 22 26999999986433222 3335666666665 111 11
Q ss_pred ccCc--eeEeecC-CeeEEEEe
Q 023060 188 TLAN--VCFSQDQ-GHFSIVVP 206 (288)
Q Consensus 188 ~~~n--vC~~~~~-GHfslVV~ 206 (288)
.+.. .|.+++. ++|++|-+
T Consensus 140 ~k~r~~ri~v~~fp~~FaVVSR 161 (326)
T 3ud1_A 140 EKKRVCRIITTDFPLYFVIMSR 161 (326)
T ss_dssp HC-CEEEEEEEECCSEEEEEEE
T ss_pred cCceEEEEEecCCCeEEEEEee
Confidence 1222 3678888 99999986
No 7
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=69.77 E-value=0.94 Score=31.43 Aligned_cols=22 Identities=32% Similarity=0.400 Sum_probs=10.4
Q ss_pred eehhhHHHHHHHHHHHHHHhhh
Q 023060 219 IGIVLGIGGFILIGYVVIASVK 240 (288)
Q Consensus 219 ig~v~G~~glvlL~~lv~~~vr 240 (288)
.+.|+|++.++++++.++...|
T Consensus 15 a~~vVGvll~vi~~l~~~~~~R 36 (44)
T 2jwa_A 15 ISAVVGILLVVVLGVVFGILIK 36 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhee
Confidence 3445555555555554443333
No 8
>1q90_G Cytochrome B6F complex subunit PETG; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.26.1
Probab=69.50 E-value=3.1 Score=27.92 Aligned_cols=29 Identities=31% Similarity=0.472 Sum_probs=20.9
Q ss_pred ehhhHHHHHHHHHHHHHHhhhhhhHHHHH
Q 023060 220 GIVLGIGGFILIGYVVIASVKVLKAKKIQ 248 (288)
Q Consensus 220 g~v~G~~glvlL~~lv~~~vr~~r~~ki~ 248 (288)
|.|+|.+-+.+.|+++.+-..++|.++++
T Consensus 8 GIVlGlipvtlaGLfv~Ay~QyrRg~~l~ 36 (37)
T 1q90_G 8 GIVLGLVPVTIAGLFVTAYLQYLRGDLAT 36 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred hHHHhhHHHHHHHHHHHHHHHHhhccccC
Confidence 77889999999999999999998877653
No 9
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=69.02 E-value=0.18 Score=36.54 Aligned_cols=13 Identities=31% Similarity=0.304 Sum_probs=4.7
Q ss_pred hhhhhHHHHHHHH
Q 023060 239 VKVLKAKKIQVME 251 (288)
Q Consensus 239 vr~~r~~ki~eME 251 (288)
.|.+|+...+++|
T Consensus 36 FKR~~~~~~~~~~ 48 (54)
T 2l8s_A 36 FKRPLKKKMEKLE 48 (54)
T ss_dssp TTSCCSCCCCC--
T ss_pred ccCCCcchhhHHh
Confidence 3434444444444
No 10
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=65.77 E-value=4.2 Score=30.95 Aligned_cols=20 Identities=15% Similarity=0.099 Sum_probs=11.0
Q ss_pred eehhhHHHHHHHHHH----HHHHh
Q 023060 219 IGIVLGIGGFILIGY----VVIAS 238 (288)
Q Consensus 219 ig~v~G~~glvlL~~----lv~~~ 238 (288)
+|+++|++++.|+.+ +++.+
T Consensus 15 ~gvi~gilliGllllliwk~~~~i 38 (79)
T 2knc_B 15 LSVMGAILLIGLAALLIWKLLITI 38 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466667654444443 45666
No 11
>1vf5_G Protein PET G; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.26.1 PDB: 2d2c_G* 2e74_G* 2e75_G* 2e76_G* 2zt9_G*
Probab=61.60 E-value=3.9 Score=27.41 Aligned_cols=29 Identities=24% Similarity=0.236 Sum_probs=21.5
Q ss_pred eehhhHHHHHHHHHHHHHHhhhhhhHHHH
Q 023060 219 IGIVLGIGGFILIGYVVIASVKVLKAKKI 247 (288)
Q Consensus 219 ig~v~G~~glvlL~~lv~~~vr~~r~~ki 247 (288)
.|.|+|.+-+.++|+++.+-..++|.+++
T Consensus 7 ~GIVlGlipvtl~GLfv~Ay~QyrRg~ql 35 (37)
T 1vf5_G 7 DGLVLGLVFATLGGLFYAAYQQYKRPNEL 35 (37)
T ss_dssp --CHHHHHHHHHHHHTHHHHHHTCC----
T ss_pred hhHHHhhHHHHHHHHHHHHHHHHhhcccc
Confidence 47889999999999999999999887765
No 12
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=57.57 E-value=4.1 Score=28.18 Aligned_cols=27 Identities=11% Similarity=0.235 Sum_probs=19.1
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhHHHHH
Q 023060 222 VLGIGGFILIGYVVIASVKVLKAKKIQ 248 (288)
Q Consensus 222 v~G~~glvlL~~lv~~~vr~~r~~ki~ 248 (288)
++|++|++++..+.+...=+.|++|++
T Consensus 15 a~~vVGvll~vi~~l~~~~~~RRR~~~ 41 (44)
T 2jwa_A 15 ISAVVGILLVVVLGVVFGILIKRRQQK 41 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCSC
T ss_pred HHHHHHHHHHHHHHHHHHhheehhhhh
Confidence 347888555555666668889988876
No 13
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=56.04 E-value=1.4 Score=33.20 Aligned_cols=19 Identities=26% Similarity=0.405 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHhhhhhh
Q 023060 225 IGGFILIGYVVIASVKVLK 243 (288)
Q Consensus 225 ~~glvlL~~lv~~~vr~~r 243 (288)
++.+.+.|+-+++.+|..+
T Consensus 18 ~~lll~~glcI~ccvkcrh 36 (70)
T 2klu_A 18 AGLLLFIGLGIFFSVRSRH 36 (70)
T ss_dssp HHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHhhHHHH
Confidence 4555556777776775543
No 14
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=51.45 E-value=0.94 Score=32.65 Aligned_cols=13 Identities=38% Similarity=0.820 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHh
Q 023060 226 GGFILIGYVVIAS 238 (288)
Q Consensus 226 ~glvlL~~lv~~~ 238 (288)
+|+.+|.++++.+
T Consensus 21 ~GLllL~li~~~L 33 (54)
T 2knc_A 21 GGLLLLTILVLAM 33 (54)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444445444444
No 15
>2kxs_A Tight junction protein ZO-1, linker, peptide of M enriched ZO-associated protein; beta-barrel, protein binding; NMR {Homo sapiens}
Probab=48.74 E-value=21 Score=30.19 Aligned_cols=61 Identities=16% Similarity=0.293 Sum_probs=42.9
Q ss_pred eeecCCCccccCcceEEEEEEeecCCcccccccC---CCceeeceeeEEEeeccCCcccCCcceeEEEecCCCeEEEcCC
Q 023060 84 NFHIPSRTIPVPHVKRLALVYHDFGNWSSHYYTV---PGYSMITPVIGFKVFDASNMMSRSVKKLSLNTMGKPIVIRFSN 160 (288)
Q Consensus 84 eF~IP~gv~~~P~v~Rl~lVyqnlGNwSs~yY~~---pgY~lvsPVlGllaYdasnl~~~~~~~l~l~~~g~PI~I~F~~ 160 (288)
...||||.++++--..|-+...+=.+ .--++ +|-+++|||+=. ++..+.+. +|+.++|++
T Consensus 39 sL~IPpgAI~~g~~~eIyl~v~~~~~---~~Ppl~~~~getLlSPvV~C-----------GP~G~~F~---kPViL~iPH 101 (146)
T 2kxs_A 39 SIIIPQGAIPEGVEQEIYFKVCRDNS---ILPPLDKEKGETLLSPLVMC-----------GPHGLKFL---KPVELRLPH 101 (146)
T ss_dssp EEEECTTSSCSSCCEEEEEEEECTTS---SCCCSCTTTTCBCCSCCEEE-----------SSSSEEEE---EEEEEEECC
T ss_pred EEEECccccCCCCeEEEEEEEecCCC---CCCCcccCCCcEeeCceEEE-----------CCCCCcCc---CCEEEEcCc
Confidence 48999999999977777776665211 12344 589999999842 33445554 599999987
Q ss_pred C
Q 023060 161 S 161 (288)
Q Consensus 161 ~ 161 (288)
-
T Consensus 102 c 102 (146)
T 2kxs_A 102 C 102 (146)
T ss_dssp C
T ss_pred C
Confidence 5
No 16
>2hjj_A Hypothetical protein YKFF; northeast structural genomics consortium (NESG), PROT structure initiative., PSI-2, structural genomics, unknown; NMR {Escherichia coli} SCOP: d.50.3.3
Probab=45.45 E-value=18 Score=28.27 Aligned_cols=34 Identities=32% Similarity=0.631 Sum_probs=25.2
Q ss_pred CceeEeecCC-eeEEEEeCCCCCCceEEEEeehhh
Q 023060 190 ANVCFSQDQG-HFSIVVPLKRKRGQWKLWAIGIVL 223 (288)
Q Consensus 190 ~nvC~~~~~G-HfslVV~~~~~~~~wk~wvig~v~ 223 (288)
.||-.-.+|| ||.+||+.....-.|..|=.--.+
T Consensus 25 ~NVfIEDDqG~HFRlVVR~~eg~mvWR~wnFEpdA 59 (87)
T 2hjj_A 25 SNITLEDDQGSHFRLVVRDTEGRMVWRAWNFEPDA 59 (87)
T ss_dssp TTEEEESCSSSCCEEEEECSSCCEEEEEESSSTTH
T ss_pred ccceeecCCCCeEEEEEEcCCCcEEEEeeccCCcH
Confidence 5566555554 999999988888889999864443
No 17
>1cd1_A CD1, MCD1D.1; immunology, MHC, TCR, glycoprotein, signal, immunoglobulin fold, T-cell; 2.67A {Mus musculus} SCOP: b.1.1.2 d.19.1.1
Probab=41.81 E-value=14 Score=33.39 Aligned_cols=80 Identities=14% Similarity=0.168 Sum_probs=39.8
Q ss_pred eceeeEEEeeccCCcccCCcceeEEEecC---CCeEEEcCCCccCCCCCCcceeEEEccCCceEEcc---cc----cCce
Q 023060 123 ITPVIGFKVFDASNMMSRSVKKLSLNTMG---KPIVIRFSNSTLSDGMVSKARCAIFSSNGTLHLGE---IT----LANV 192 (288)
Q Consensus 123 vsPVlGllaYdasnl~~~~~~~l~l~~~g---~PI~I~F~~~~~~~~~~~~~~Cv~F~~~G~~~~~~---~~----~~nv 192 (288)
+.|-+=+..-..+. .....|.=.+.| .+|.|....--....+ ...-=..-+.||+.+..- ++ ..+.
T Consensus 184 ~~P~v~v~~~~~~~---~~~~~L~C~a~gFyP~~i~v~W~~~g~~~~~-~~~~~~~pn~Dgtfq~~~~l~v~~~~~~~ys 259 (315)
T 1cd1_A 184 EKPVAWLSSVPSSA---HGHRQLVCHVSGFYPKPVWVMWMRGDQEQQG-THRGDFLPNADETWYLQATLDVEAGEEAGLA 259 (315)
T ss_dssp BCCEEEEEEEECSS---SSCEEEEEEEEEEBSSCEEEEEEETTEECTT-CEECCCEECTTSCEEEEEEEECCSSTTTTEE
T ss_pred CCCcceEEeCCCCC---CCceEEEEEEeeeeCCCcEEEEEEccccCCc-ccccceEECCCCCEEEEEEEEEccCCCCEEE
Confidence 56777665543321 111335555544 6888877532111111 111112335678877653 22 3568
Q ss_pred eEeecCCe--eEEEEe
Q 023060 193 CFSQDQGH--FSIVVP 206 (288)
Q Consensus 193 C~~~~~GH--fslVV~ 206 (288)
|.....|. --+++.
T Consensus 260 C~V~H~~l~~~p~~~~ 275 (315)
T 1cd1_A 260 CRVKHSSLGGQDIILY 275 (315)
T ss_dssp EEEEETTCSSCCEEEC
T ss_pred EEEEeCccCCCCeEEE
Confidence 98887774 234444
No 18
>4dlq_A Latrophilin-1; GAIN domain, includes the GPS motif, hormone binding domain, autoproteolysis, A-latrotoxin, extracellular domain; HET: NAG; 1.85A {Rattus norvegicus}
Probab=39.03 E-value=46 Score=30.97 Aligned_cols=70 Identities=19% Similarity=0.312 Sum_probs=44.6
Q ss_pred EEEEEEeecCCccc-ccccC----------C---CceeeceeeEEEeeccCCcccCCcceeEEEecCCCeEEEcCCCccC
Q 023060 99 RLALVYHDFGNWSS-HYYTV----------P---GYSMITPVIGFKVFDASNMMSRSVKKLSLNTMGKPIVIRFSNSTLS 164 (288)
Q Consensus 99 Rl~lVyqnlGNwSs-~yY~~----------p---gY~lvsPVlGllaYdasnl~~~~~~~l~l~~~g~PI~I~F~~~~~~ 164 (288)
=+.+.|.+||+.=. .++.+ . ...+-++|++...++..+. .++ .+||.|.|.+...
T Consensus 269 v~~v~y~~Lg~iL~~~n~~~~~~~~~~~~~~~~~~~~lnS~Vvs~sv~~~~~~-------~~L---~~pV~itf~h~~~- 337 (381)
T 4dlq_A 269 VVFILYNNLGLFLSTENATVKLAGEAGTGGPGGASLVVNSQVIAASINKESSR-------VFL---MDPVIFTVAHLEA- 337 (381)
T ss_dssp EEEEEESSGGGGSCCTTCCCCCSSCBCCSSTTCCSEEECSCEEEEEESSTTCC-------CEE---EEEEEEEEECSCC-
T ss_pred EEEEEeCChHHhcCccccccccccccccccccccceeeecceEEEEecCCCCc-------ccC---CCCEEEEEEecCC-
Confidence 34568999996532 11111 1 4678999999988753211 122 3699999999753
Q ss_pred CCCCCcceeEEEccCC
Q 023060 165 DGMVSKARCAIFSSNG 180 (288)
Q Consensus 165 ~~~~~~~~Cv~F~~~G 180 (288)
.....+.||..|.+.
T Consensus 338 -~~~~~~~CvfW~~~~ 352 (381)
T 4dlq_A 338 -KNHFNANCSFWNYSE 352 (381)
T ss_dssp -TTEEEEEEEEEEECT
T ss_pred -CCCCcccceecccCC
Confidence 223567999998764
No 19
>2kxr_A Tight junction protein ZO-1; beta-barrel, protein binding; NMR {Homo sapiens}
Probab=38.50 E-value=35 Score=27.68 Aligned_cols=73 Identities=18% Similarity=0.303 Sum_probs=44.4
Q ss_pred ecccccccCCccceeecCCCccccCcceEEEE-EEeecCCcccccccC---CCceeeceeeEEEeeccCCcccCCcceeE
Q 023060 71 RSRRLWNRGANFCNFHIPSRTIPVPHVKRLAL-VYHDFGNWSSHYYTV---PGYSMITPVIGFKVFDASNMMSRSVKKLS 146 (288)
Q Consensus 71 RsgSLrr~G~~~~eF~IP~gv~~~P~v~Rl~l-VyqnlGNwSs~yY~~---pgY~lvsPVlGllaYdasnl~~~~~~~l~ 146 (288)
|.|.|+-..... ...||||.++++--.-+-+ |.++.. .--++ .|-+++|||+=. ++..+.
T Consensus 13 ~GG~L~~~~sGv-sL~IPpgAi~~~~~~eiyl~v~~~~~----~~Ppl~~~~ge~LlSpvV~c-----------GP~G~~ 76 (118)
T 2kxr_A 13 NGGVLSSIETGV-SIIIPQGAIPEGVEQEIYFKVCRDNS----ILPPLDKEKGETLLSPLVAA-----------GPHGLK 76 (118)
T ss_dssp TCEEEECTTTCC-EEEECTTSSCTTCCEEEEEEEESCSS----SCCCSCTTTCCCBCSTTEEC-----------SSSCCE
T ss_pred CCCEEEcCCCCe-EEEECccccCCCCeEEEEEEEccCCC----CCCCccCCCCcEeeCCeEEE-----------CCCCCc
Confidence 345555442111 4889999999985543433 344331 12245 589999999842 334455
Q ss_pred EEecCCCeEEEcCCCc
Q 023060 147 LNTMGKPIVIRFSNST 162 (288)
Q Consensus 147 l~~~g~PI~I~F~~~~ 162 (288)
+. +|+.++|++-.
T Consensus 77 F~---~PViL~iPHca 89 (118)
T 2kxr_A 77 FL---KPVELRLPHCD 89 (118)
T ss_dssp EE---EEEEEEECCCC
T ss_pred Cc---CCEEEEcCCCC
Confidence 54 59999998853
No 20
>3f59_A Ankyrin-1; beta sandwich, ZU5, spectrin binding, alternative P usage, ANK repeat, cytoskeleton, disease mutation; 2.00A {Homo sapiens} PDB: 3kbt_C 3kbu_C
Probab=36.49 E-value=46 Score=28.59 Aligned_cols=69 Identities=20% Similarity=0.201 Sum_probs=38.1
Q ss_pred CCCCCceEEE-EEEecccccccCCccceeecCCCccccCcceEEEEEEeec-CCcccccccC-CCceeeceeeEEE
Q 023060 58 ANLSGMSVSI-VRLRSRRLWNRGANFCNFHIPSRTIPVPHVKRLALVYHDF-GNWSSHYYTV-PGYSMITPVIGFK 130 (288)
Q Consensus 58 ~NlSGi~vsa-vRlRsgSLrr~G~~~~eF~IP~gv~~~P~v~Rl~lVyqnl-GNwSs~yY~~-pgY~lvsPVlGll 130 (288)
+|-+|.-||- |.=|.|+++.....=-.|.||||++..|- |+..=+-|= ..++ --++ +|=.|+|+|+=+-
T Consensus 1 ~~~~gFlvSFlVdarGg~~~~~r~~GvrliiPpga~~~pt--rI~cRl~~p~~~~~--~PpL~egE~LlSrvlElg 72 (161)
T 3f59_A 1 SNATGFLVSFMVDARGGSMRGSRHNGLRVVIPPRTCAAPT--RITCRLVKPQKLST--PPPLAEEEGLASRIIALG 72 (161)
T ss_dssp ----CCSEEEEECTTCEEEECTTCSSCEEEECTTSCSSCE--EEEEEEECGGGCSS--CCCCCTTCEECSCEEEEE
T ss_pred CCccceEEEEEEeCCCCEEEcccCCCEEEEECCCCCCCCc--EEEEEEECCcccCC--CCCCCCCccccCceeeec
Confidence 3556766653 45678888853322225899999999884 443222220 1111 1255 6888998887543
No 21
>1s7q_A H-2KB, H-2 class I histocompatibility antigen, K-B alpha chain; LCMV, MHC class I, immune escape, immune system; 1.99A {Mus musculus} SCOP: b.1.1.2 d.19.1.1 PDB: 1s7r_A 1s7s_A 1s7t_A 1bii_A 3qul_A 1s7v_A 1s7w_A 1s7x_A 3quk_A 1s7u_A 1nez_A*
Probab=33.83 E-value=20 Score=33.18 Aligned_cols=73 Identities=12% Similarity=0.059 Sum_probs=35.5
Q ss_pred eceeeEEEeeccCCcccCCcceeEEEecC---CCeEEEcCCCc-cCCCCCCcceeEEEccCCceEEcc---cc----cCc
Q 023060 123 ITPVIGFKVFDASNMMSRSVKKLSLNTMG---KPIVIRFSNST-LSDGMVSKARCAIFSSNGTLHLGE---IT----LAN 191 (288)
Q Consensus 123 vsPVlGllaYdasnl~~~~~~~l~l~~~g---~PI~I~F~~~~-~~~~~~~~~~Cv~F~~~G~~~~~~---~~----~~n 191 (288)
+.|-+=+..-..++ +...|.=.+.| .+|.|....-- ....+ ...-=..-+.||+.+..- ++ ..+
T Consensus 183 ~~P~V~v~~~~~~~----~~~~L~C~a~gFyP~~I~v~W~~~G~~~~~~-~~~~~~~pn~Dgtfq~~s~l~v~~~~~~~y 257 (348)
T 1s7q_A 183 DSPKAHVTHHSRPE----DKVTLRCWALGFYPADITLTWQLNGEELIQD-MELVETRPAGDGTFQKWASVVVPLGKEQYY 257 (348)
T ss_dssp BCCEEEEEEEECSS----SEEEEEEEEEEEBSSCCEEEEEETTEECTTT-CEECCCEECSSSCEEEEEEEEEETTCGGGE
T ss_pred cccceeeccCCCCC----CcEEEEEEEeeeECCCcEEEEEECCEEccCC-ceecceEECCCCCEEEEEEEEEcCCCCCEE
Confidence 45666555443221 11234444444 67888776311 11111 111113346788877653 22 356
Q ss_pred eeEeecCCe
Q 023060 192 VCFSQDQGH 200 (288)
Q Consensus 192 vC~~~~~GH 200 (288)
.|.....|.
T Consensus 258 sC~V~H~~l 266 (348)
T 1s7q_A 258 TCHVYHQGL 266 (348)
T ss_dssp EEEEECTTC
T ss_pred EEEEEcccC
Confidence 888877764
No 22
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A*
Probab=32.75 E-value=12 Score=38.98 Aligned_cols=21 Identities=5% Similarity=0.159 Sum_probs=0.0
Q ss_pred eehhhHHHHHHHHHHHHHHhh
Q 023060 219 IGIVLGIGGFILIGYVVIASV 239 (288)
Q Consensus 219 ig~v~G~~glvlL~~lv~~~v 239 (288)
++..+|++.|+++.++++++.
T Consensus 708 i~il~~~~~ll~~~ll~~~~~ 728 (880)
T 1q55_A 708 LVILGSVLALLILFLLLLLFL 728 (880)
T ss_dssp ---------------------
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 344445554444444444443
No 23
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=29.47 E-value=23 Score=23.29 Aligned_cols=15 Identities=20% Similarity=0.195 Sum_probs=12.0
Q ss_pred HHHHHHHHHhccccc
Q 023060 244 AKKIQVMEKQADEDL 258 (288)
Q Consensus 244 ~~ki~eMEr~A~~gE 258 (288)
|+||+.|+-++|.-|
T Consensus 10 KkKiq~lq~q~d~ae 24 (37)
T 3azd_A 10 RRKIRSLQEQNYHLE 24 (37)
T ss_dssp HHHHHHHHHHTTTTH
T ss_pred HHHHHHHHHHHHHHH
Confidence 689999998887643
No 24
>3arc_J Photosystem II reaction center protein J; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_J* 3a0b_J* 3a0h_J* 2axt_J* 3bz1_J* 3bz2_J* 3kzi_J* 3prq_J* 3prr_J*
Probab=29.41 E-value=14 Score=25.19 Aligned_cols=22 Identities=27% Similarity=0.765 Sum_probs=17.3
Q ss_pred EEEEeehhhHHHHHHHHHHHHH
Q 023060 215 KLWAIGIVLGIGGFILIGYVVI 236 (288)
Q Consensus 215 k~wvig~v~G~~glvlL~~lv~ 236 (288)
-.|++|++.|...+.++|++..
T Consensus 9 PLWlvgtv~G~~vi~~~giFfy 30 (40)
T 3arc_J 9 PLWIVATVAGMGVIVIVGLFFY 30 (40)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred cEEeeeeehhhhhhheeeEEEe
Confidence 4678899999888888887654
No 25
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=20.36 E-value=53 Score=21.64 Aligned_cols=17 Identities=18% Similarity=0.464 Sum_probs=7.5
Q ss_pred ehhhHH-HHHHHHHHHHH
Q 023060 220 GIVLGI-GGFILIGYVVI 236 (288)
Q Consensus 220 g~v~G~-~glvlL~~lv~ 236 (288)
|.|+|. .|+.++..+++
T Consensus 15 GiVvG~v~gv~li~~l~~ 32 (38)
T 2k1k_A 15 AVIFGLLLGAALLLGILV 32 (38)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred eeehHHHHHHHHHHHHHH
Confidence 455543 34444444443
Done!