Query 023060
Match_columns 288
No_of_seqs 64 out of 66
Neff 4.2
Searched_HMMs 13730
Date Mon Mar 25 15:41:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023060.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/023060hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2hjja1 d.50.3.3 (A:10-75) Hyp 41.9 7.8 0.00057 27.2 2.6 31 190-220 16-47 (66)
2 d2axtj1 f.23.32.1 (J:7-40) Pho 31.8 5.5 0.0004 24.6 0.4 22 216-237 4-25 (34)
3 d1ltqa1 c.108.1.9 (A:153-301) 26.5 9.9 0.00072 27.3 1.1 16 169-184 5-20 (149)
4 d1e50b_ b.54.1.1 (B:) Core bin 25.5 22 0.0016 27.8 3.1 53 143-195 52-108 (134)
5 d1pw4a_ f.38.1.1 (A:) Glycerol 21.7 31 0.0022 27.8 3.4 16 238-253 429-444 (447)
6 d2pc6a2 d.58.18.6 (A:1-77) Ace 18.5 20 0.0014 25.3 1.3 32 72-105 20-51 (77)
7 d1emsa1 d.13.1.1 (A:281-440) N 17.5 37 0.0027 26.1 2.8 45 73-126 12-57 (160)
8 d3dtub2 f.17.2.1 (B:30-129) Ba 11.1 66 0.0048 22.7 2.5 22 224-245 37-58 (100)
9 d2awna1 b.40.6.3 (A:236-370) M 11.0 57 0.0041 22.9 2.1 23 150-182 104-126 (135)
10 d1q90g_ f.23.26.1 (G:) PetG su 10.7 98 0.0071 18.1 2.6 21 220-240 8-28 (30)
No 1
>d2hjja1 d.50.3.3 (A:10-75) Hypothetical protein YkfF {Escherichia coli [TaxId: 562]}
Probab=41.88 E-value=7.8 Score=27.18 Aligned_cols=31 Identities=29% Similarity=0.657 Sum_probs=22.5
Q ss_pred CceeEeec-CCeeEEEEeCCCCCCceEEEEee
Q 023060 190 ANVCFSQD-QGHFSIVVPLKRKRGQWKLWAIG 220 (288)
Q Consensus 190 ~nvC~~~~-~GHfslVV~~~~~~~~wk~wvig 220 (288)
.||-.-.+ ..||.|||+.....-.|+.|=.-
T Consensus 16 ~NV~IEDDqg~HFRlVvR~~eg~mvWR~wNfE 47 (66)
T d2hjja1 16 SNITLEDDQGSHFRLVVRDTEGRMVWRAWNFE 47 (66)
T ss_dssp TTEEEESCSSSCCEEEEECSSCCEEEEEESSS
T ss_pred cceeeecCCCCeEEEEEEcCCCcEEEEEeccC
Confidence 45554344 45999999987777888898753
No 2
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=31.82 E-value=5.5 Score=24.60 Aligned_cols=22 Identities=27% Similarity=0.782 Sum_probs=17.4
Q ss_pred EEEeehhhHHHHHHHHHHHHHH
Q 023060 216 LWAIGIVLGIGGFILIGYVVIA 237 (288)
Q Consensus 216 ~wvig~v~G~~glvlL~~lv~~ 237 (288)
.|++|.+.|.+.+.++|++...
T Consensus 4 LWlv~tv~G~~vi~~vG~FfYG 25 (34)
T d2axtj1 4 LWIVATVAGMGVIVIVGLFFYG 25 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeeehhhhhhHhheeeeeee
Confidence 5788999998888888877643
No 3
>d1ltqa1 c.108.1.9 (A:153-301) Polynucleotide kinase, phosphatase domain {Bacteriophage T4 [TaxId: 10665]}
Probab=26.54 E-value=9.9 Score=27.34 Aligned_cols=16 Identities=38% Similarity=0.628 Sum_probs=13.1
Q ss_pred CcceeEEEccCCceEE
Q 023060 169 SKARCAIFSSNGTLHL 184 (288)
Q Consensus 169 ~~~~Cv~F~~~G~~~~ 184 (288)
+.+|||-||.||+..-
T Consensus 5 ~kpk~vifDiDgTL~~ 20 (149)
T d1ltqa1 5 GKPKAVIFDVDGTLAK 20 (149)
T ss_dssp TSCEEEEEETBTTTBC
T ss_pred CCCcEEEEEcCCCcEe
Confidence 4569999999999743
No 4
>d1e50b_ b.54.1.1 (B:) Core binding factor beta, CBF {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.49 E-value=22 Score=27.83 Aligned_cols=53 Identities=13% Similarity=0.310 Sum_probs=35.7
Q ss_pred ceeEEEecCCCeEEEcCCCccC-CCCCCcc-eeEEEcc-CCceEEcc-cccCceeEe
Q 023060 143 KKLSLNTMGKPIVIRFSNSTLS-DGMVSKA-RCAIFSS-NGTLHLGE-ITLANVCFS 195 (288)
Q Consensus 143 ~~l~l~~~g~PI~I~F~~~~~~-~~~~~~~-~Cv~F~~-~G~~~~~~-~~~~nvC~~ 195 (288)
-+|.+.++|..+.+.|...... ...-.+. .++.||. .|+|+++. ..-..||.-
T Consensus 52 ~eiaFvatGtNl~L~f~p~~~~~~~~~~~~~~~~dFdke~Gkvhl~s~fImNGVCV~ 108 (134)
T d1e50b_ 52 SEIAFVATGTNLSLQFFPASWQGEQRQTPSREYVDLEREAGKVYLKAPMILNGVCVI 108 (134)
T ss_dssp EEEEETTTTBCCEEECSCTTC----CCCCCTTTEESSSSTTEEEEEEEEEETTEEEE
T ss_pred ceEEEEeeccceeEEeccCCCCCcccccCCccccccccccCeeeeecceeEcceEEE
Confidence 4688888999999999544322 1121222 5789998 69999976 556779974
No 5
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=21.74 E-value=31 Score=27.80 Aligned_cols=16 Identities=6% Similarity=0.150 Sum_probs=7.8
Q ss_pred hhhhhhHHHHHHHHHh
Q 023060 238 SVKVLKAKKIQVMEKQ 253 (288)
Q Consensus 238 ~vr~~r~~ki~eMEr~ 253 (288)
....+++||.||+.++
T Consensus 429 ~~~~~~~~r~~~~~~e 444 (447)
T d1pw4a_ 429 VVMIGEKRRHEQLLQE 444 (447)
T ss_dssp HHHHHHHHHHHGGGGG
T ss_pred HHHHhccccHHHHHHh
Confidence 3444555555555443
No 6
>d2pc6a2 d.58.18.6 (A:1-77) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]}
Probab=18.50 E-value=20 Score=25.26 Aligned_cols=32 Identities=22% Similarity=0.352 Sum_probs=26.6
Q ss_pred cccccccCCccceeecCCCccccCcceEEEEEEe
Q 023060 72 SRRLWNRGANFCNFHIPSRTIPVPHVKRLALVYH 105 (288)
Q Consensus 72 sgSLrr~G~~~~eF~IP~gv~~~P~v~Rl~lVyq 105 (288)
+|-++|||.|...++..| ...|-+-|+.+|-.
T Consensus 20 s~lF~rRg~NI~Sltv~~--te~~~iSRmtivv~ 51 (77)
T d2pc6a2 20 AGLFSARGYNIESLSVAP--TEDPTLSRMTLVTN 51 (77)
T ss_dssp HHHHHHHTCCCCEEEEEE--CSSTTEEEEEEEEE
T ss_pred HHHHhccCcceEEEEEec--cCCCCeEEEEEEEE
Confidence 477899999999999877 55788999998854
No 7
>d1emsa1 d.13.1.1 (A:281-440) NIT-FHIT fusion protein, C-terminal domain {Nematode (Caenorhabditis elegans) [TaxId: 6239]}
Probab=17.48 E-value=37 Score=26.10 Aligned_cols=45 Identities=22% Similarity=0.397 Sum_probs=27.6
Q ss_pred ccccccCCccceeecCCCccccCcceEEEEEEeecCCcccccccC-CCceeecee
Q 023060 73 RRLWNRGANFCNFHIPSRTIPVPHVKRLALVYHDFGNWSSHYYTV-PGYSMITPV 126 (288)
Q Consensus 73 gSLrr~G~~~~eF~IP~gv~~~P~v~Rl~lVyqnlGNwSs~yY~~-pgY~lvsPV 126 (288)
.|-|..|.+|..+.||.--+. |-..-++++.| .+|+ ||+.||.|-
T Consensus 12 ~~~~~~~~~~~~~eiP~~~ii--~ede~~~af~D-------i~P~~pgH~LVIPK 57 (160)
T d1emsa1 12 KSSETGGLKFARFNIPADHIF--YSTPHSFVFVN-------LKPVTDGHVLVSPK 57 (160)
T ss_dssp CCCCSSCCEETTEECCGGGEE--EECSSEEEEEC-------SSCSSTTCEEEEES
T ss_pred cccccCCceEcCCcCCcceEE--EeCCCEEEEEC-------CCCCCCCeEEEEEe
Confidence 445777889999999965220 11111223333 2566 899999994
No 8
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=11.12 E-value=66 Score=22.67 Aligned_cols=22 Identities=5% Similarity=0.007 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHhhhhhhHH
Q 023060 224 GIGGFILIGYVVIASVKVLKAK 245 (288)
Q Consensus 224 G~~glvlL~~lv~~~vr~~r~~ 245 (288)
+++.++..++++.++.|+++||
T Consensus 37 ~~I~~~V~~~l~~~~~~~r~~~ 58 (100)
T d3dtub2 37 AAITIFVTLLILYAVWRFHEKR 58 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHBTTT
T ss_pred HHHHHHHHHHHHHHhhhhhccC
Confidence 5556666677777777776654
No 9
>d2awna1 b.40.6.3 (A:236-370) Maltose transport protein MalK, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=11.00 E-value=57 Score=22.89 Aligned_cols=23 Identities=30% Similarity=0.655 Sum_probs=18.0
Q ss_pred cCCCeEEEcCCCccCCCCCCcceeEEEccCCce
Q 023060 150 MGKPIVIRFSNSTLSDGMVSKARCAIFSSNGTL 182 (288)
Q Consensus 150 ~g~PI~I~F~~~~~~~~~~~~~~Cv~F~~~G~~ 182 (288)
.|+.|.|.|+. .+|.-||.+|..
T Consensus 104 ~G~~v~l~~~~----------~~~~lFd~~G~~ 126 (135)
T d2awna1 104 EGATFAIGLPP----------ERCHLFREDGTA 126 (135)
T ss_dssp TTCEEEEECCG----------GGCEEECTTSBB
T ss_pred CCCEEEEEECh----------hhEEEECCCCCE
Confidence 47788888854 289999999984
No 10
>d1q90g_ f.23.26.1 (G:) PetG subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=10.65 E-value=98 Score=18.13 Aligned_cols=21 Identities=38% Similarity=0.593 Sum_probs=15.4
Q ss_pred ehhhHHHHHHHHHHHHHHhhh
Q 023060 220 GIVLGIGGFILIGYVVIASVK 240 (288)
Q Consensus 220 g~v~G~~glvlL~~lv~~~vr 240 (288)
|.|+|.+-+-+.|+++.+-..
T Consensus 8 GivlGlipiTl~Glfv~AylQ 28 (30)
T d1q90g_ 8 GIVLGLVPVTIAGLFVTAYLQ 28 (30)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHhhHHHHHHHHHHHHHHH
Confidence 667788888888888876543
Done!