Query 023061
Match_columns 288
No_of_seqs 136 out of 254
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 15:41:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023061.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023061hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vx8_B Autophagy-related prote 100.0 6.6E-98 2E-102 695.3 8.0 257 26-288 5-261 (292)
2 2dyt_A Autophagy-related prote 100.0 7.5E-92 2.6E-96 660.2 4.2 236 6-278 3-250 (312)
3 4ebr_A Ubiquitin-like-conjugat 99.9 2.3E-23 8E-28 180.3 0.6 77 197-273 61-144 (169)
4 3vx7_B E2; ubiquitin conjugati 99.6 7.3E-16 2.5E-20 132.2 3.4 72 198-272 48-129 (152)
5 2lpu_A Kmatg10; autophagy, E2- 98.8 3.1E-12 1.1E-16 109.2 0.0 75 198-274 48-131 (152)
6 1ufn_A Putative nuclear protei 41.8 9 0.00031 30.2 1.3 22 30-53 46-68 (94)
7 2f40_A Hypothetical protein PF 41.4 12 0.0004 29.5 1.8 39 213-251 36-81 (96)
8 1h5p_A Nuclear autoantigen SP1 39.7 10 0.00035 29.9 1.3 21 32-54 44-64 (95)
9 3qwu_A DNA ligase; structural 38.6 52 0.0018 31.5 6.2 62 211-283 147-214 (370)
10 1oqj_A Glucocorticoid modulato 25.8 27 0.00093 27.5 1.6 23 29-53 39-61 (97)
11 1x66_A Friend leukemia integra 22.5 23 0.00079 27.6 0.6 49 12-60 38-96 (98)
12 3ndq_A Transcription elongatio 22.1 19 0.00065 28.4 0.0 35 4-40 64-98 (108)
13 1vqz_A Lipoate-protein ligase, 20.7 43 0.0015 31.1 2.1 28 31-58 227-254 (341)
No 1
>3vx8_B Autophagy-related protein 3; E1-E2 complex, ligase; 3.11A {Arabidopsis thaliana}
Probab=100.00 E-value=6.6e-98 Score=695.29 Aligned_cols=257 Identities=82% Similarity=1.327 Sum_probs=148.2
Q ss_pred ccccccccChHHHHHhcccccccCCccccCCCCCCCCCCCCCCCCeeEEeCCCchhhhhhhhhhhhhccCCcccccCCCC
Q 023061 26 AFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPSKRKSYLPADKQFLITRNVPCLRRAASVEEEYEGAGGEILVDNEDN 105 (288)
Q Consensus 26 ~F~etG~LTPeEFV~AGD~LV~k~PTW~W~~gd~~k~k~yLP~dKQfLiTRnVPC~~R~~~~~~e~~~~~~~~~~~~~~d 105 (288)
+|++||+|||||||+||||||||||||||++|+++|+|+|||+||||||||||||+|||+++.++|....++++++++++
T Consensus 5 ~F~etG~lTPEEFV~AGD~LV~kfPTW~W~~g~~~k~~~yLP~dKQfLvTRnVPC~~R~~~~~~~~~~~~e~~~~~~d~d 84 (292)
T 3vx8_B 5 AFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGDASKRKPYLPSDKQFLITRNVPCLRRAASVAEDYEAAGGEVLVDDEDN 84 (292)
T ss_dssp HHHHHCCCCHHHHHHHHHHHHHHCTTCEEECCCGGGCCTTSCTTCSEEEEEEEEECSCTTC-------------------
T ss_pred ceeeCceeCHHHHHhhhhhhhhcCCCccCCCCCccccccCCCCCCeEEEECCcccHHHhhhhhccccccchhhccccCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999767777777777667778
Q ss_pred CceeecCCCCCCCCCCCccCCCCCchhhhhhcccccccccCCCCCCCCCcCCccCccccCCCCCCccCCCCCCCCCCccc
Q 023061 106 DGWLATHGKPKAKCDEDEDDNLPSMEAVEISKNNNVRAISTYFGGEEEEEEDIPDMAEYNEPDSIIENETDPATLPSTYL 185 (288)
Q Consensus 106 dgWv~t~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~Dm~~~~~~~~l~~~edD~~~~~~~~~ 185 (288)
+|||.||+..... ....+.+++|+...........+..+. ..++++++|+||++++++++++ ++|++++.+++.
T Consensus 85 dgWv~t~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~--~~~~d~~ei~Dmdd~~d~~~~~--~dd~a~~~~~~~ 158 (292)
T 3vx8_B 85 DGWLATHGKPKDK--GKEEDNLPSMDALDINEKNTIQSIPTY--FGGEEDDDIPDMEEFDEADNVV--ENDPATLQSTYL 158 (292)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CceeecCCccccc--ccccccccccccccccccccccccccc--cccccccccCchhhhhcccccc--ccchhhhccccc
Confidence 8999999753221 123456777765432111111111111 2346788999999998877654 566666544333
Q ss_pred ccCCCCCCCcceeEEEEEEEEEeCCCCCceeEEeeecCCCCCCCHHHHHHhhhccccCcceeecCCCCCCCCceEEecCC
Q 023061 186 VAHEPDDDNILRTRTYDISITYDKYYQTPRVWLTGYDESRMLLKTELILEDVSQDHARKTVTIEDHPHLTGKHASIHPCR 265 (288)
Q Consensus 186 ~~~~~~~~~i~~~rtYd~~ItYd~~YqtP~l~l~gy~~~g~pL~~~~~~edi~~d~~~ktvT~e~HP~l~~~~~siHPCk 265 (288)
...++++++|+++||||||||||+|||||||||+||+++|+||++++|||||+++|++|||||++|||||+||++|||||
T Consensus 159 ~~~~~~~~~i~~~RtYd~~ItYs~~YqtPrLyl~gy~~~g~PL~~ee~~edi~~d~~~ktVT~e~HP~l~~p~~siHPC~ 238 (292)
T 3vx8_B 159 VAHEPDDDNILRTRTYDLSITYDKYYQTPRVWLTGYDESRMLLQPELVMEDVSQDHARKTVTIEDHPHLPGKHASVHPCR 238 (292)
T ss_dssp ----------CCCEEEEEEEEEETTTTEEEEEEEEECTTSCBCCGGGGGGTSCCC----CEEEEECSSSSSEEEEECGGG
T ss_pred cccccCcccccceEEEEEEEEEECCCCCCeEEEEEECCCCCcCCHHHHHHHhhhhhhcceEEeecCCccCCceeEEecCC
Confidence 22233467899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhCCCCCccCC
Q 023061 266 HGAVMKKIIDVLVSRGVEPEVDK 288 (288)
Q Consensus 266 ha~vMk~l~~~~~~~g~e~~v~~ 288 (288)
||+|||+||+++.++|++++|||
T Consensus 239 ha~vMk~l~~~~~~~~~~~~v~~ 261 (292)
T 3vx8_B 239 HGAVMKKIIDVLMSRGVEPEVDK 261 (292)
T ss_dssp HHHHHHHHHHHHHHHTCCCCGGG
T ss_pred cHHHHHHHHHHHHhcCCCcChhh
Confidence 99999999999999999999985
No 2
>2dyt_A Autophagy-related protein 3; E2 fold, ligase; 2.50A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.5e-92 Score=660.22 Aligned_cols=236 Identities=28% Similarity=0.514 Sum_probs=145.8
Q ss_pred HHHHHHhhhhhhhccCCCCCccccccccChHHHHHhcccccccCCccccCCC-CCCCCCCCCCCCCeeEEeCCCchhhhh
Q 023061 6 KFYGIFKGTVEKITSHRTVSAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESG-EPSKRKSYLPADKQFLITRNVPCLRRA 84 (288)
Q Consensus 6 ~~~s~~~~v~e~ltPv~~~S~F~etG~LTPeEFV~AGD~LV~k~PTW~W~~g-d~~k~k~yLP~dKQfLiTRnVPC~~R~ 84 (288)
.|+|++++||||||||+++|+|++||+|||||||+||||||||||||||++| +++|+|+|||+||||||||||||+|||
T Consensus 3 ~~~s~~~~~~e~ltpv~~~S~F~etG~lTPeEFV~AGD~Lv~k~PTW~W~~~~~~~k~~~yLP~dKQfLiTRnVPC~~R~ 82 (312)
T 2dyt_A 3 MIRSTLSSWREYLTPITHKSTFLTTGQITPEEFVQAGDYLCHMFPTWKWNEESSDISYRDFLPKNKQFLIIRKVPCDKRA 82 (312)
T ss_dssp --------------------CHHHHSCCCHHHHHHHHHHHHHHCTTCEECCCCTTBCCCTTSCTTCSCEEEEEEEECSCT
T ss_pred hHHHHHHHHHHHhcCCCCccccccCcccCHHHHHhcchhhhhhCCccccccCCCcccccCCCCCCceEEEecCcccHHHh
Confidence 5899999999999999999999999999999999999999999999999865 789999999999999999999999999
Q ss_pred hhhhhhhhccCCcccc-------cCCCCCceeecC--CCCCCCCCCCccCCCCCchhhhhhcccccccccCCCCCCCCCc
Q 023061 85 ASVEEEYEGAGGEILV-------DNEDNDGWLATH--GKPKAKCDEDEDDNLPSMEAVEISKNNNVRAISTYFGGEEEEE 155 (288)
Q Consensus 85 ~~~~~e~~~~~~~~~~-------~~~~ddgWv~t~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (288)
++| +....+++++ ++++++|||.|| +...........++|++|+. .+++
T Consensus 83 ~~~---~~~~~~~~~~~~~~~~~~~~~~dgWv~t~~~~~~~~~~~~~~~~~i~~~~~-------------------~~d~ 140 (312)
T 2dyt_A 83 EQC---VEVEGPDVIMKGFAEDGDEDDVLEYIGSETEHVQSTPAGGTKDSSIDDIDE-------------------LIQD 140 (312)
T ss_dssp TTC------------------------------------------------CHHHHH-------------------HHHH
T ss_pred hhc---cccchhhhhhccccccccccCCCceeeccccccccCccccccccccccccc-------------------cccc
Confidence 998 3444444443 345678999998 21110000000111111110 0111
Q ss_pred CCccCccccCCCCCCccCCCCCCCCCCcccccCCCCCCCcceeEEEEEEEEEeCCCCCceeEEeeecCCCCCCCHHHHHH
Q 023061 156 EDIPDMAEYNEPDSIIENETDPATLPSTYLVAHEPDDDNILRTRTYDISITYDKYYQTPRVWLTGYDESRMLLKTELILE 235 (288)
Q Consensus 156 ~ei~Dm~~~~~~~~l~~~edD~~~~~~~~~~~~~~~~~~i~~~rtYd~~ItYd~~YqtP~l~l~gy~~~g~pL~~~~~~e 235 (288)
++|+|.+ +++|++++.... ..+++|.++|+||||||||+|||||||||+||+++|+||++++||+
T Consensus 141 ~~~~d~~----------~~~d~~~~~~~~-----~~~~~~~~~rtYd~~ItYs~sYqvPvLyf~gy~~dg~PL~~~e~~e 205 (312)
T 2dyt_A 141 MEIKEED----------ENDDTEEFNAKG-----GLAKDMAQERYYDLYIAYSTSYRVPKMYIVGFNSNGSPLSPEQMFE 205 (312)
T ss_dssp HHHC-----------------------------------CCCCEEEEEEEEEETTTTEEEEEEEEEETTCCBCCHHHHHT
T ss_pred ccccccc----------ccCCHHHhhccc-----cccCCccceEEEEEEEEEecCccCCeEEEEeECCCCCCCCHHHHHH
Confidence 2222211 022322221111 1345789999999999999999999999999999999999999999
Q ss_pred hhhccccCcceeecCCCC--CCCCceEEecCCcHHHHHHHHHHHH
Q 023061 236 DVSQDHARKTVTIEDHPH--LTGKHASIHPCRHGAVMKKIIDVLV 278 (288)
Q Consensus 236 di~~d~~~ktvT~e~HP~--l~~~~~siHPCkha~vMk~l~~~~~ 278 (288)
||+++|+.|||||++||| +|+||++|||||||+|||.|++++.
T Consensus 206 di~~d~~~ktVT~e~HP~~~lg~p~~sIHPCkta~vMk~l~~~~~ 250 (312)
T 2dyt_A 206 DISADYRTKTATIEKLPFYKNSVLSVSIHPCKHANVMKILLDKVR 250 (312)
T ss_dssp TSCTTTHHHHEEEEECTTBSSCCEEEEECSCSSSCHHHHHHHHHH
T ss_pred HHHHhhccCceecccCCCccCCCceEEEecCcHHHHHHHHHHHHh
Confidence 999999999999999999 8999999999999999999999998
No 3
>4ebr_A Ubiquitin-like-conjugating enzyme ATG10; autophagy, ligase, protein binding, A ATG5, thiolation; 2.70A {Saccharomyces cerevisiae}
Probab=99.86 E-value=2.3e-23 Score=180.34 Aligned_cols=77 Identities=16% Similarity=0.220 Sum_probs=68.5
Q ss_pred eeEEEEEEEEEeCCCCCceeEEeeecCCCCCCCHH------HHHHhhhccccCcceeec-CCCCCCCCceEEecCCcHHH
Q 023061 197 RTRTYDISITYDKYYQTPRVWLTGYDESRMLLKTE------LILEDVSQDHARKTVTIE-DHPHLTGKHASIHPCRHGAV 269 (288)
Q Consensus 197 ~~rtYd~~ItYd~~YqtP~l~l~gy~~~g~pL~~~------~~~edi~~d~~~ktvT~e-~HP~l~~~~~siHPCkha~v 269 (288)
+.++||+||+||++||||+|||+||+++|.|+... +++++++..++.++||.+ +||++|.||++||||+||++
T Consensus 61 ~~~~id~~I~Ys~sYqVPvL~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~Hp~~g~p~~~iHPC~T~~~ 140 (169)
T 4ebr_A 61 LLNHIELYLTYSKVYNEPLLLLRIWEEKSIDGIPMTKLMLPTDIESLLDVQGKFQLGLDTIINLEGSVWYSFHPCDTSCI 140 (169)
T ss_dssp CCEEEEEEEEEETTTTEEEEEEEEEEEEEETTEEEEEECCHHHHHHHHTTTTCCCCSSEEEEEETTEEEEECCSSCGGGS
T ss_pred cceEEEEEEEEecccCCcEEEEEEEcCCCCccchhhhhcchHHHHHHhccccceEEEeccCCCCCCCceEEEcCcCcHHH
Confidence 56899999999999999999999999999887664 677888888888887754 79999999999999999999
Q ss_pred HHHH
Q 023061 270 MKKI 273 (288)
Q Consensus 270 Mk~l 273 (288)
|+.+
T Consensus 141 m~~~ 144 (169)
T 4ebr_A 141 VGDQ 144 (169)
T ss_dssp CCTT
T ss_pred Hhcc
Confidence 9753
No 4
>3vx7_B E2; ubiquitin conjugation; 3.20A {Kluyveromyces marxianus} PDB: 2lpu_A
Probab=99.57 E-value=7.3e-16 Score=132.20 Aligned_cols=72 Identities=15% Similarity=0.196 Sum_probs=57.4
Q ss_pred eEEEEEEEEEeCCCCCceeEEeeecCCCCCCCHHHHH----------HhhhccccCcceeecCCCCCCCCceEEecCCcH
Q 023061 198 TRTYDISITYDKYYQTPRVWLTGYDESRMLLKTELIL----------EDVSQDHARKTVTIEDHPHLTGKHASIHPCRHG 267 (288)
Q Consensus 198 ~rtYd~~ItYd~~YqtP~l~l~gy~~~g~pL~~~~~~----------edi~~d~~~ktvT~e~HP~l~~~~~siHPCkha 267 (288)
..+||+||+||.+||||+|||+.|..+ .++-.+++ +++.+-- ..+|++..||+|+.||++||||+|+
T Consensus 48 ~~~~e~~I~Ys~~YqvPvL~fR~~~~~--~~~~ie~~~~~~~~~~~i~~ll~i~-~~sI~L~~hp~l~~~wy~IHPCdT~ 124 (152)
T 3vx7_B 48 DTLLELHIYYDHVYHVPSIKFRLWSLD--TEEDISSLRLLTLSDSELRSILNLG-TFSVTLSTDMEMKSVYYYINNCDTD 124 (152)
T ss_dssp TEEEEEEEEECSSSSSEEEEEEEEEEE--ECSSSEEEEECCCCHHHHHHHSCCT-TCCEEEEECTTSSSEEEEECCTTHH
T ss_pred ceEEEEEEEEeccccCceEEEEeecCC--cccchhhheeccCchhhHHHHhccc-ceeEEeeeccccCCceEEEcCccHH
Confidence 478999999999999999999999886 23322221 2222221 4689999999999999999999999
Q ss_pred HHHHH
Q 023061 268 AVMKK 272 (288)
Q Consensus 268 ~vMk~ 272 (288)
++|+.
T Consensus 125 eivg~ 129 (152)
T 3vx7_B 125 ANVGS 129 (152)
T ss_dssp HHHCS
T ss_pred HHhcc
Confidence 99984
No 5
>2lpu_A Kmatg10; autophagy, E2-like, proteolysis, protein transport; NMR {Kluyveromyces marxianus}
Probab=98.77 E-value=3.1e-12 Score=109.21 Aligned_cols=75 Identities=15% Similarity=0.212 Sum_probs=57.6
Q ss_pred eEEEEEEEEEeCCCCCceeEEeeecCCCCCCCHHHH---------HHhhhccccCcceeecCCCCCCCCceEEecCCcHH
Q 023061 198 TRTYDISITYDKYYQTPRVWLTGYDESRMLLKTELI---------LEDVSQDHARKTVTIEDHPHLTGKHASIHPCRHGA 268 (288)
Q Consensus 198 ~rtYd~~ItYd~~YqtP~l~l~gy~~~g~pL~~~~~---------~edi~~d~~~ktvT~e~HP~l~~~~~siHPCkha~ 268 (288)
--++|++|+||..||||.|||+-|..++. ...+.+ .+++.+--. -+|++..||+.+.+|++||||.|++
T Consensus 48 ~~~iE~~I~Y~~~YqVP~L~fRlwe~~~~-~~i~~~~l~fp~~~~~~~iL~i~~-fsi~Ld~~~~~~s~Wy~IHpCdTs~ 125 (152)
T 2lpu_A 48 DTLLELHIYYDHVYHVPSIKFRLWSLDTE-EDISSLRLLTLSDSELRSILNLGT-FSVTLSTDMEMKSVYYYINNCDTDA 125 (152)
Confidence 35789999999999999999999999872 222211 233322111 4589999999999999999999999
Q ss_pred HHHHHH
Q 023061 269 VMKKII 274 (288)
Q Consensus 269 vMk~l~ 274 (288)
+|+...
T Consensus 126 iVg~~~ 131 (152)
T 2lpu_A 126 NVGSDV 131 (152)
Confidence 998743
No 6
>1ufn_A Putative nuclear protein homolog 5830484A20RIK; SAND domain, KDWK motif, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.217.1.1
Probab=41.83 E-value=9 Score=30.18 Aligned_cols=22 Identities=41% Similarity=0.720 Sum_probs=18.6
Q ss_pred cc-ccChHHHHHhcccccccCCccc
Q 023061 30 KG-VLSVSEFVLAGDNLVSKCPTWS 53 (288)
Q Consensus 30 tG-~LTPeEFV~AGD~LV~k~PTW~ 53 (288)
.| .+||.||+.-|-....| .|+
T Consensus 46 dg~w~TP~EFe~~~g~~~sK--dWK 68 (94)
T 1ufn_A 46 AGDWLTVKEFLNEGGRATSK--DWK 68 (94)
T ss_dssp TCCEECHHHHHHHHTCTTCS--CHH
T ss_pred CCcEEChHHhhhhcCccccc--Ccc
Confidence 35 89999999999988777 776
No 7
>2f40_A Hypothetical protein PF1455; protein structure prediction, residual dipolar couplings, PY furious, simulated annealing, structural genomics; NMR {Pyrococcus furiosus} SCOP: i.11.1.1
Probab=41.39 E-value=12 Score=29.47 Aligned_cols=39 Identities=18% Similarity=0.303 Sum_probs=30.1
Q ss_pred CceeEEeeecCCC------CCCCHHHHHHhhhccc-cCcceeecCC
Q 023061 213 TPRVWLTGYDESR------MLLKTELILEDVSQDH-ARKTVTIEDH 251 (288)
Q Consensus 213 tP~l~l~gy~~~g------~pL~~~~~~edi~~d~-~~ktvT~e~H 251 (288)
|=|+|++||..+| .-|+-+++++-+-++- ..|++|+++-
T Consensus 36 vyRvFiNgYAk~g~ViFDe~kl~~e~lLeelkPEVi~ek~lTv~EL 81 (96)
T 2f40_A 36 FYRVFINPYAKVAEVVIDDSKVNIEELKEKLKGEVIEEKEITLQEL 81 (96)
T ss_dssp BCCCCCCTTTTCCEEECCBCSCSHHHHHHHTTTCSSCCCCCCCSSC
T ss_pred hhhheeccccccceEEECcccCCHHHHHHHcChhhcccccccHHHH
Confidence 3378999999988 4789999999766654 4488998863
No 8
>1h5p_A Nuclear autoantigen SP100-B; transcription, DNA binding, SAND domain, KDWK, nuclear protein, alternative splicing; NMR {Homo sapiens} SCOP: d.217.1.1
Probab=39.73 E-value=10 Score=29.93 Aligned_cols=21 Identities=33% Similarity=0.591 Sum_probs=18.1
Q ss_pred ccChHHHHHhcccccccCCcccc
Q 023061 32 VLSVSEFVLAGDNLVSKCPTWSW 54 (288)
Q Consensus 32 ~LTPeEFV~AGD~LV~k~PTW~W 54 (288)
.+||.||+..|-..-.| .|+=
T Consensus 44 w~TP~EFe~~~g~~~sK--dWKr 64 (95)
T 1h5p_A 44 WFTPREFEIEGDRGASK--NWKL 64 (95)
T ss_dssp EECHHHHHHHHTCSTTC--CHHH
T ss_pred EEChHHhhhhcCcccCc--Ccce
Confidence 89999999999987777 7763
No 9
>3qwu_A DNA ligase; structural genomics, PSI-2, midwest center for structural GE MCSG; HET: DNA ADN; 2.35A {Aquifex aeolicus}
Probab=38.65 E-value=52 Score=31.51 Aligned_cols=62 Identities=21% Similarity=0.147 Sum_probs=44.7
Q ss_pred CCCceeEEeeec----CCCCCCCHHHHHHhhhccccCcceeecCCCCCCCCceEEecCC--cHHHHHHHHHHHHhCCCC
Q 023061 211 YQTPRVWLTGYD----ESRMLLKTELILEDVSQDHARKTVTIEDHPHLTGKHASIHPCR--HGAVMKKIIDVLVSRGVE 283 (288)
Q Consensus 211 YqtP~l~l~gy~----~~g~pL~~~~~~edi~~d~~~ktvT~e~HP~l~~~~~siHPCk--ha~vMk~l~~~~~~~g~e 283 (288)
|...-+||+-|| ..+++|++.+-.+- ++.+++-.++.+-..|++ .++-.+.+++++.+.|+|
T Consensus 147 y~~~~i~F~VFDV~d~~~~~~L~~~eR~~l-----------l~~~~lp~V~ii~~~~~~~~~~~~l~~~l~~l~~~g~E 214 (370)
T 3qwu_A 147 YVKEDVQLFVFDFMKKNEQGFLSQEEKMEL-----------IEKYNLPHVEILGRFTASEEGIKKIKEILKRFNEEGRE 214 (370)
T ss_dssp TCCSSCEEEEEEEEETTCCSCCCHHHHHHH-----------HHHHTCCBCCEEEEECSSHHHHHHHHHHHHHHHHTTCC
T ss_pred ccccCceEEEEeCccccCCCcCCHHHHHHH-----------HHHCCCCCccEEEEeCCCCCCHHHHHHHHHHHHhCCCc
Confidence 434455555554 55889999998743 344444567889999999 777789999999888764
No 10
>1oqj_A Glucocorticoid modulatory element binding protein-1; SAND domain, alpha-beta fold, KDWK motif, zinc-binding motif, DNA binding protein; 1.55A {Homo sapiens} SCOP: d.217.1.1
Probab=25.83 E-value=27 Score=27.54 Aligned_cols=23 Identities=22% Similarity=0.406 Sum_probs=18.2
Q ss_pred cccccChHHHHHhcccccccCCccc
Q 023061 29 EKGVLSVSEFVLAGDNLVSKCPTWS 53 (288)
Q Consensus 29 etG~LTPeEFV~AGD~LV~k~PTW~ 53 (288)
+...+||.||+..|-.--.| .|+
T Consensus 39 ~~~w~TP~EFe~~~gk~~sK--dWK 61 (97)
T 1oqj_A 39 NDQLISPKHFVHLAGKSTLK--DWK 61 (97)
T ss_dssp TTEEECHHHHHHHTTCGGGS--CHH
T ss_pred CCEEEChHHHhhhcCcCCCC--Ccc
Confidence 34689999999999877777 465
No 11
>1x66_A Friend leukemia integration 1 transcription factor; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.53 E-value=23 Score=27.59 Aligned_cols=49 Identities=20% Similarity=0.163 Sum_probs=39.1
Q ss_pred hhhhhhhccCCCCCcc-ccccc----cChHHHHH-----hcccccccCCccccCCCCCC
Q 023061 12 KGTVEKITSHRTVSAF-KEKGV----LSVSEFVL-----AGDNLVSKCPTWSWESGEPS 60 (288)
Q Consensus 12 ~~v~e~ltPv~~~S~F-~etG~----LTPeEFV~-----AGD~LV~k~PTW~W~~gd~~ 60 (288)
+.+++|=.+...-+.| .-+|. +|-|+|+. .||.|-.++--|++++.+++
T Consensus 38 W~~~ef~L~~v~~~~F~~m~G~~LC~ls~edF~~~~~~~~GdiL~~hL~~Lk~~~s~~~ 96 (98)
T 1x66_A 38 WAIKEYSLMEIDTSFFQNMDGKELCKMNKEDFLRATTLYNTEVLLSHLSYLRESSSGPS 96 (98)
T ss_dssp HHHHHTTCCSCCGGGGTTCCHHHHHHCCHHHHHTTSCHHHHHHHHHHHHHHHTCSSCCC
T ss_pred HHHHhcCCCCCChhhCCCCCHHHHHcCCHHHHHHHcCCCchHHHHHHHHHHHhcCCCCC
Confidence 4556666676778899 78884 99999976 39999999999999876654
No 12
>3ndq_A Transcription elongation factor A protein 1; helix bundle; 1.93A {Homo sapiens}
Probab=22.15 E-value=19 Score=28.45 Aligned_cols=35 Identities=6% Similarity=0.019 Sum_probs=21.6
Q ss_pred HHHHHHHHhhhhhhhccCCCCCccccccccChHHHHH
Q 023061 4 QQKFYGIFKGTVEKITSHRTVSAFKEKGVLSVSEFVL 40 (288)
Q Consensus 4 ~~~~~s~~~~v~e~ltPv~~~S~F~etG~LTPeEFV~ 40 (288)
|.++++.+.++.+-=.|.|+..- -.|.|||++||.
T Consensus 64 k~k~Rsl~fNLKd~kNp~Lr~~v--l~G~isp~~lv~ 98 (108)
T 3ndq_A 64 KNRVRSRISNLKDAKNPNLRKNV--LCGNIPPDLFAR 98 (108)
T ss_dssp HHHHHHHHHHHTCTTCHHHHHHH--HHTSSCHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHH--HcCCcCHHHHhC
Confidence 44556666555554445443332 369999999985
No 13
>1vqz_A Lipoate-protein ligase, putative; class II AARS and biotin synthetases fold, SUFE/NIFU fold, S genomics; HET: MSE; 1.99A {Streptococcus pneumoniae} SCOP: d.224.1.3 d.104.1.3
Probab=20.73 E-value=43 Score=31.09 Aligned_cols=28 Identities=29% Similarity=0.439 Sum_probs=22.5
Q ss_pred cccChHHHHHhcccccccCCccccCCCC
Q 023061 31 GVLSVSEFVLAGDNLVSKCPTWSWESGE 58 (288)
Q Consensus 31 G~LTPeEFV~AGD~LV~k~PTW~W~~gd 58 (288)
+.||++|+-.+-...-.|+-+|.|.-|.
T Consensus 227 ~~lt~~e~~~i~~l~~~ky~s~eW~~g~ 254 (341)
T 1vqz_A 227 YVFSEEELAEINRIKDTKFGTWDWNYGK 254 (341)
T ss_dssp CCCCHHHHHHHHHHHHHTTTCHHHHTCC
T ss_pred CCCCHHHHHHHHHHHHHhcCCcccccCC
Confidence 8899999987755444599999998763
Done!