Query 023061
Match_columns 288
No_of_seqs 136 out of 254
Neff 4.7
Searched_HMMs 13730
Date Mon Mar 25 15:41:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023061.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/023061hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2diia1 a.240.1.1 (A:8-55) TFI 56.6 1.7 0.00012 28.7 1.0 12 29-40 31-42 (48)
2 d1oqja_ d.217.1.1 (A:) Glucoco 40.7 5.2 0.00038 29.4 1.6 25 28-54 34-58 (90)
3 d1h5pa_ d.217.1.1 (A:) Nuclear 40.7 4.6 0.00033 30.0 1.3 23 29-53 40-63 (95)
4 d1ufna_ d.217.1.1 (A:) Putativ 25.5 11 0.00079 27.8 1.1 20 32-53 49-68 (94)
5 d1wyha1 g.39.1.3 (A:35-66) Fou 25.5 7.3 0.00053 23.5 0.1 21 59-82 8-28 (32)
6 d1qk7a_ g.3.6.2 (A:) Lectin SH 25.4 8.2 0.0006 22.9 0.3 6 50-55 21-26 (32)
7 d1wlza1 a.39.1.7 (A:229-311) D 24.8 20 0.0015 23.9 2.5 35 3-41 11-45 (83)
8 d2pjua1 c.92.3.1 (A:11-196) Pr 23.8 15 0.0011 29.5 1.9 25 214-244 2-26 (186)
9 d1qcrd2 a.3.1.3 (D:167-195) Cy 20.5 24 0.0017 20.7 1.7 17 223-239 6-22 (29)
10 d1snla_ a.39.1.7 (A:) Nucleobi 17.1 17 0.0012 25.4 0.6 21 21-41 73-93 (99)
No 1
>d2diia1 a.240.1.1 (A:8-55) TFIIH basal transcription factor complex p62 subunit, BTF2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=56.62 E-value=1.7 Score=28.70 Aligned_cols=12 Identities=33% Similarity=0.354 Sum_probs=10.1
Q ss_pred cccccChHHHHH
Q 023061 29 EKGVLSVSEFVL 40 (288)
Q Consensus 29 etG~LTPeEFV~ 40 (288)
-+|+||+|||-+
T Consensus 31 vs~VitseEFWa 42 (48)
T d2diia1 31 VSQVISAEEFWA 42 (48)
T ss_dssp TTTSSCHHHHHH
T ss_pred HhccccHHHHHH
Confidence 379999999964
No 2
>d1oqja_ d.217.1.1 (A:) Glucocorticoid modulatory element binding protein-1 (Gmeb1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=40.73 E-value=5.2 Score=29.43 Aligned_cols=25 Identities=20% Similarity=0.308 Sum_probs=20.3
Q ss_pred ccccccChHHHHHhcccccccCCcccc
Q 023061 28 KEKGVLSVSEFVLAGDNLVSKCPTWSW 54 (288)
Q Consensus 28 ~etG~LTPeEFV~AGD~LV~k~PTW~W 54 (288)
.+...+||.||+.-|..--.| .|+=
T Consensus 34 ~~g~w~TP~EFe~~~gk~~sK--~WK~ 58 (90)
T d1oqja_ 34 FNDQLISPKHFVHLAGKSTLK--DWKR 58 (90)
T ss_dssp ETTEEECHHHHHHHTTCGGGS--CHHH
T ss_pred ECCEEECHHHHhhhcCccccC--CCch
Confidence 355689999999999988887 6763
No 3
>d1h5pa_ d.217.1.1 (A:) Nuclear autoantigen Sp100b {Human (Homo sapiens) [TaxId: 9606]}
Probab=40.67 E-value=4.6 Score=30.04 Aligned_cols=23 Identities=35% Similarity=0.593 Sum_probs=18.3
Q ss_pred ccc-ccChHHHHHhcccccccCCccc
Q 023061 29 EKG-VLSVSEFVLAGDNLVSKCPTWS 53 (288)
Q Consensus 29 etG-~LTPeEFV~AGD~LV~k~PTW~ 53 (288)
+.| .+||.||+.-|...-.| .|+
T Consensus 40 ~~g~w~TP~EFe~~~Gk~~sK--dWK 63 (95)
T d1h5pa_ 40 EDKKWFTPREFEIEGDRGASK--NWK 63 (95)
T ss_dssp TTTEEECHHHHHHHHTCSTTC--CHH
T ss_pred CCCcEeCHHHHhhccCCcccC--CCc
Confidence 345 89999999999877666 676
No 4
>d1ufna_ d.217.1.1 (A:) Putative nuclear protein homolog 5830484a20rik {Mouse (Mus musculus) [TaxId: 10090]}
Probab=25.47 E-value=11 Score=27.80 Aligned_cols=20 Identities=40% Similarity=0.689 Sum_probs=15.7
Q ss_pred ccChHHHHHhcccccccCCccc
Q 023061 32 VLSVSEFVLAGDNLVSKCPTWS 53 (288)
Q Consensus 32 ~LTPeEFV~AGD~LV~k~PTW~ 53 (288)
.+||.||+..|..--.| .|+
T Consensus 49 w~TP~eFe~~~gk~~~K--~WK 68 (94)
T d1ufna_ 49 WLTVKEFLNEGGRATSK--DWK 68 (94)
T ss_dssp EECHHHHHHHHTCTTCS--CHH
T ss_pred EECHHHHHHhcCccccC--CCc
Confidence 79999999998865554 565
No 5
>d1wyha1 g.39.1.3 (A:35-66) Four and a half LIM domains 3, FHL3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.46 E-value=7.3 Score=23.53 Aligned_cols=21 Identities=29% Similarity=0.691 Sum_probs=16.4
Q ss_pred CCCCCCCCCCCCeeEEeCCCchhh
Q 023061 59 PSKRKSYLPADKQFLITRNVPCLR 82 (288)
Q Consensus 59 ~~k~k~yLP~dKQfLiTRnVPC~~ 82 (288)
|=-.|+|+|++-++. =||||.
T Consensus 8 PIGtkSFip~~~~~y---CvpCYE 28 (32)
T d1wyha1 8 PLGSRSFVPDKGAHY---CVPCYE 28 (32)
T ss_dssp BTTTSCEEEETTEEE---EHHHHH
T ss_pred cccccccccCCCcEE---EEeccc
Confidence 445689999999887 478885
No 6
>d1qk7a_ g.3.6.2 (A:) Lectin SHL-I {Chinese bird spider (Selenocosmia huwena) [TaxId: 29017]}
Probab=25.45 E-value=8.2 Score=22.93 Aligned_cols=6 Identities=50% Similarity=1.503 Sum_probs=5.3
Q ss_pred CccccC
Q 023061 50 PTWSWE 55 (288)
Q Consensus 50 PTW~W~ 55 (288)
|||+|.
T Consensus 21 ~twkwc 26 (32)
T d1qk7a_ 21 RTWKWC 26 (32)
T ss_dssp SSSCBE
T ss_pred Cceeee
Confidence 799996
No 7
>d1wlza1 a.39.1.7 (A:229-311) DJ-1-binding protein, DJBP {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.82 E-value=20 Score=23.88 Aligned_cols=35 Identities=14% Similarity=0.242 Sum_probs=22.8
Q ss_pred hHHHHHHHHhhhhhhhccCCCCCccccccccChHHHHHh
Q 023061 3 LQQKFYGIFKGTVEKITSHRTVSAFKEKGVLSVSEFVLA 41 (288)
Q Consensus 3 ~~~~~~s~~~~v~e~ltPv~~~S~F~etG~LTPeEFV~A 41 (288)
|+.++.+.+..+++.+.-.-+ ..+|.||.+||..+
T Consensus 11 l~~~i~~~~~~l~~~F~~~D~----~~~G~i~~~ef~~~ 45 (83)
T d1wlza1 11 LHKAVTSHYHAITQEFENFDT----MKTNTISREEFRAI 45 (83)
T ss_dssp HHHHHHHTHHHHHHHHHHHCT----TCSSCBCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCC----CCCceEChhHHHHH
Confidence 455666666666666543322 34899999999875
No 8
>d2pjua1 c.92.3.1 (A:11-196) Propionate catabolism operon regulatory protein PrpR {Escherichia coli [TaxId: 562]}
Probab=23.84 E-value=15 Score=29.48 Aligned_cols=25 Identities=16% Similarity=0.371 Sum_probs=21.1
Q ss_pred ceeEEeeecCCCCCCCHHHHHHhhhccccCc
Q 023061 214 PRVWLTGYDESRMLLKTELILEDVSQDHARK 244 (288)
Q Consensus 214 P~l~l~gy~~~g~pL~~~~~~edi~~d~~~k 244 (288)
||+|++|+.. +-+.|++|.++|...
T Consensus 2 p~i~~~~~sr------L~~l~~~i~~ey~~~ 26 (186)
T d2pjua1 2 PVIWTVSVTR------LFELFRDISLEFDHL 26 (186)
T ss_dssp CEEEEECCHH------HHHHHHHHHTTTTTT
T ss_pred CEEEEEEHHH------HHHHHHHHHHHhcCC
Confidence 9999999875 778899999988763
No 9
>d1qcrd2 a.3.1.3 (D:167-195) Cytochrome bc1 domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=20.50 E-value=24 Score=20.70 Aligned_cols=17 Identities=12% Similarity=0.149 Sum_probs=15.1
Q ss_pred CCCCCCCHHHHHHhhhc
Q 023061 223 ESRMLLKTELILEDVSQ 239 (288)
Q Consensus 223 ~~g~pL~~~~~~edi~~ 239 (288)
.+|.|-|.+||-.||..
T Consensus 6 ~DGt~at~~q~a~DV~~ 22 (29)
T d1qcrd2 6 DDGTPATMSQVAKDVCT 22 (29)
T ss_pred CCCCcCcHHHHHHHHHH
Confidence 58999999999999864
No 10
>d1snla_ a.39.1.7 (A:) Nucleobindin 1 (CALNUC) {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.13 E-value=17 Score=25.38 Aligned_cols=21 Identities=10% Similarity=0.194 Sum_probs=16.5
Q ss_pred CCCCCccccccccChHHHHHh
Q 023061 21 HRTVSAFKEKGVLSVSEFVLA 41 (288)
Q Consensus 21 v~~~S~F~etG~LTPeEFV~A 41 (288)
+.+.-..-..|.||-+||++|
T Consensus 73 ~~~~~D~d~DG~Is~~EF~~~ 93 (99)
T d1snla_ 73 VMKNVDTNQDRLVTLEEFLAS 93 (99)
T ss_dssp HHHHTCSSCSSEEEHHHHHHH
T ss_pred HHHHcCCCCCCcCcHHHHHHH
Confidence 334556677899999999986
Done!