BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 023062
         (288 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3F0W|A Chain A, Human Numb-Like Protein, Phosphotyrosine Interaction
           Domain
          Length = 168

 Score = 30.0 bits (66), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 5/69 (7%)

Query: 101 KNWLIDKDISQEASSLSSFCQDVRNLDKLYSLIIEQGLIGQGKDRFSIAIDSVSEMVRHA 160
           K+ L+D+ I +      SFC   RNLDK +S I   G   +      +A+    E + HA
Sbjct: 97  KDLLVDQTIEK-----VSFCAPDRNLDKAFSYICRDGTTRRWICHCFLALKDSGERLSHA 151

Query: 161 SISSVAGIL 169
              + A  L
Sbjct: 152 VGCAFAACL 160


>pdb|1WJ1|A Chain A, Solution Structure Of Phosphotyrosine Interaction Domain
           Of Mouse Numb Protein
          Length = 156

 Score = 28.5 bits (62), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 5/80 (6%)

Query: 101 KNWLIDKDISQEASSLSSFCQDVRNLDKLYSLIIEQGLIGQGKDRFSIAIDSVSEMVRHA 160
           K+ ++D+ I +      SFC   RN D+ +S I   G   +      +A+    E + HA
Sbjct: 81  KDLIVDQTIEK-----VSFCAPDRNFDRAFSYICRDGTTRRWICHCFMAVKDTGERLSHA 135

Query: 161 SISSVAGILSNLRSHDQVSS 180
              + A  L   +     SS
Sbjct: 136 VGCAFAACLERKQKRSGPSS 155


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.137    0.396 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,887,041
Number of Sequences: 62578
Number of extensions: 303549
Number of successful extensions: 838
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 836
Number of HSP's gapped (non-prelim): 4
length of query: 288
length of database: 14,973,337
effective HSP length: 98
effective length of query: 190
effective length of database: 8,840,693
effective search space: 1679731670
effective search space used: 1679731670
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)