BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023062
(288 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|F4IQJ2|ELP5_ARATH Elongator complex protein 5 OS=Arabidopsis thaliana GN=ELP5 PE=1
SV=1
Length = 374
Score = 305 bits (780), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 158/288 (54%), Positives = 213/288 (73%), Gaps = 10/288 (3%)
Query: 1 MADTICRTLRDGGLEGEHAPALTIKDSKASPFGFDVFNYVLTQLSNYILAGKSQSRGLVV 60
MA++I R LRDGG EGE APALTI+++ ASPFG DV Y+LT LS+ ILAGKS S+GLV+
Sbjct: 1 MAESIFRKLRDGGEEGELAPALTIEETVASPFGLDVSGYLLTNLSSSILAGKSSSQGLVL 60
Query: 61 VAYSRSPSFYVDLLKRRGIDIASSHDWIHILDCYTDPLGWKNWLIDKDISQEASS--LSS 118
+ +SRSPSFY+ LLK++GI ++SS WI ILDCYTDPLGW ID+ + + L
Sbjct: 61 ITFSRSPSFYLQLLKQKGIVVSSSSKWIRILDCYTDPLGW----IDQSSTSFSEGSSLIK 116
Query: 119 FCQDVRNLDKLYSLIIEQG--LIGQGKDRFSIAIDSVSEMVRHASISSVAGILSNLRSHD 176
+ V +L KL+S IIE G L+G GK RF +AIDSV+E++RH+++ V+G+L++LRSH
Sbjct: 117 LHKCVSDLKKLFSSIIEAGRELVGTGKTRFCVAIDSVNELLRHSAMPLVSGLLTDLRSHA 176
Query: 177 QVSSIFWLLHSDLHEIKFTSVLEYLSSMVASVEPFNQAAFGQRVDLENLSMLEQNFRKGK 236
Q+SS+FW L++DLH+ K T+ LEY+S+M A++EP ++ GQR LENL + Q+F KG+
Sbjct: 177 QISSVFWSLNTDLHQEKVTNALEYISTMKANLEPLCPSSDGQRNALENLFSVHQDFGKGR 236
Query: 237 FHVRFKRRNGRVRVMCEEILVELAGIKFTPVLSEDEII--NQRLLPKV 282
FHVRFK R GRVRVM EE V+ +GI F+P+ S D +I + LLPKV
Sbjct: 237 FHVRFKLRKGRVRVMSEEYHVDQSGINFSPISSVDTVIAATKSLLPKV 284
>sp|A1A5V9|ELP5_DANRE Elongator complex protein 5 OS=Danio rerio GN=elp5 PE=2 SV=1
Length = 296
Score = 45.4 bits (106), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 55/126 (43%), Gaps = 19/126 (15%)
Query: 88 IHILDCYTDPLGWKNWLIDKDISQEASSLSSFCQDVRNLDKLYSLIIEQGLIGQGKDRFS 147
+H + DPLGW+ SSF + + S I Q + + S
Sbjct: 67 LHFHKGFPDPLGWRGK-------------SSF-----TVQQFTSQHITQLIRDSQPAKAS 108
Query: 148 I-AIDSVSEMVRHASISSVAGILSNLRSHDQVSSIFWLLHSDLHEIKFTSVLEYLSSMVA 206
+ +DS+S ++RH V L LR V +I LLHSDLH ++ +L+S V
Sbjct: 109 VLVVDSLSLVLRHHDPVIVCQSLQELRKGGVVKTIIGLLHSDLHLQGIVGIVCHLASTVI 168
Query: 207 SVEPFN 212
SV P N
Sbjct: 169 SVAPTN 174
>sp|Q9UB00|GLCM4_CAEEL Putative glucosylceramidase 4 OS=Caenorhabditis elegans GN=gba-4
PE=3 SV=2
Length = 519
Score = 33.9 bits (76), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 50/108 (46%), Gaps = 1/108 (0%)
Query: 44 LSNYILAGKSQSRGLVVVAYSRSPSFYVDLLKRRGIDIASSHDWIHILDCYTDPLGWKNW 103
L+ AG + G + ++SR+ + DL+K G + DW +ILD P KN
Sbjct: 358 LATEACAGYFPADGPKLGSWSRAEQYANDLIKDMGNWVGGWVDWNYILDLQGGPNLAKN- 416
Query: 104 LIDKDISQEASSLSSFCQDVRNLDKLYSLIIEQGLIGQGKDRFSIAID 151
+D I A++ + Q + ++ +S ++ G I G + ++D
Sbjct: 417 FVDSTIIVNATAQEYYKQPIWHVMAQFSKFVKPGAIRVGINIIEKSVD 464
>sp|Q9UMZ2|SYNRG_HUMAN Synergin gamma OS=Homo sapiens GN=SYNRG PE=1 SV=2
Length = 1314
Score = 33.5 bits (75), Expect = 2.0, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 7/79 (8%)
Query: 14 LEGEHAPALTIKDSKASPFGFDVFNYVLTQLSNYILAGK---SQSRGL---VVVAYSRSP 67
+ G+H PA I+D K + FG N+ ++ L++Y + + +Q R L V+ A S SP
Sbjct: 861 VSGQHPPAADIEDLKYAAFGSYSSNFAVSTLTSYDWSDRDDATQGRKLSPFVLSAGSGSP 920
Query: 68 SFYVDLLKRRGIDIASSHD 86
S +L+++ SS +
Sbjct: 921 S-ATSILQKKETSFGSSEN 938
>sp|B1HM45|GLYA_LYSSC Serine hydroxymethyltransferase OS=Lysinibacillus sphaericus
(strain C3-41) GN=glyA PE=3 SV=1
Length = 413
Score = 33.1 bits (74), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 59/151 (39%), Gaps = 16/151 (10%)
Query: 17 EHAPALTIKDSKASP--FGFDVFNYVLTQLSNYILAGKSQSRGLVVVAYSRSPSFYVDLL 74
EH P L + + A P F F + ++ Y + + GLV V +SP Y D +
Sbjct: 163 EHKPKLIVAGASAYPREIDFSKFREIADEVGAYFMVDMAHIAGLVAVGEHQSPVPYADFV 222
Query: 75 KR---------RGIDIASSHDWIHILDCYTDPLGWKNWLIDKDISQEASSLSSFCQ---- 121
RG I +S +W L+ P G + + I+ +A + Q
Sbjct: 223 TSTTHKTLRGPRGGLILASKEWEQKLNKSVFP-GIQGGPLMHVIAAKAVAFGEVLQPEFK 281
Query: 122 DVRNLDKLYSLIIEQGLIGQGKDRFSIAIDS 152
D KL + + + LI +G + S D+
Sbjct: 282 DYAKQIKLNAKALAEVLIAEGVEIVSGGTDN 312
>sp|O29316|Y946_ARCFU Uncharacterized protein AF_0946 OS=Archaeoglobus fulgidus (strain
ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=AF_0946 PE=4 SV=1
Length = 1036
Score = 33.1 bits (74), Expect = 2.7, Method: Composition-based stats.
Identities = 28/81 (34%), Positives = 39/81 (48%), Gaps = 14/81 (17%)
Query: 206 ASVEPFNQAAFGQRVDLE-------NLSMLEQNFRKGKFHVRFKRRNGRVRVMCEEILVE 258
ASV+ N F + VDL NL LE +RFK+ G +V E+ L+E
Sbjct: 785 ASVDTNNY--FNKTVDLRDIAKNKLNLDALEPGLYVLTAELRFKQSLGGEKVDSEDKLIE 842
Query: 259 LAGIKF-----TPVLSEDEII 274
+ G+ F TPV+ DEI+
Sbjct: 843 ILGLTFEVDVNTPVVIGDEIV 863
>sp|B2FP48|SYGA_STRMK Glycine--tRNA ligase alpha subunit OS=Stenotrophomonas maltophilia
(strain K279a) GN=glyQ PE=3 SV=1
Length = 303
Score = 32.3 bits (72), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 39/98 (39%), Gaps = 25/98 (25%)
Query: 68 SFYVDLLKRRGIDIASSHDWIHILDCYTDP------LGWKNWLIDKDISQ-----EASSL 116
Y+D LK GID HD + D + P LGW+ WL +++Q +A L
Sbjct: 98 QLYLDSLKALGID-PLVHDLRFVEDNWESPTLGAWGLGWEVWLNGMEVTQFTYFQQAGGL 156
Query: 117 SS-------------FCQDVRNLDKLYSLIIEQGLIGQ 141
C ++N D +Y LI G GQ
Sbjct: 157 ECRPVLGEITYGLERLCMYLQNCDNVYDLIWTYGPDGQ 194
>sp|B4U198|GATB_STREM Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B
OS=Streptococcus equi subsp. zooepidemicus (strain
MGCS10565) GN=gatB PE=3 SV=1
Length = 479
Score = 32.0 bits (71), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 71/165 (43%), Gaps = 24/165 (14%)
Query: 94 YTDPLGWKNWLIDKDISQEASSLSSFCQDVRNLDKLYSLIIEQGLIGQGKDRFSIAIDSV 153
+ +P+G+ W+ DI+ E S + +L++ + G G D +S +D
Sbjct: 95 FDEPIGYNGWI---DITLEDGSTKKIRIERAHLEE------DAGKNTHGTDGYSY-VDLN 144
Query: 154 SEMVRHASISSVAGILSNLRSHDQVSSIFWLLHSDLHEIKFTSVLEYLSSMVA----SVE 209
+ V I S A ++RS ++ + L + + V SM S+
Sbjct: 145 RQGVPLIEIVSEA----DMRSPEEAYAYLTALKEIIQYTGISDVKMEEGSMRVDANISLR 200
Query: 210 PFNQAAFGQRVDLENLSMLEQNFRKG-KFHV----RFKRRNGRVR 249
P+ Q AFG + +L+NL+ N RKG +F V + R G +R
Sbjct: 201 PYGQEAFGTKTELKNLNSF-SNVRKGLEFEVERQAKILRSGGVIR 244
>sp|C0M7E9|GATB_STRE4 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B
OS=Streptococcus equi subsp. equi (strain 4047) GN=gatB
PE=3 SV=1
Length = 479
Score = 31.6 bits (70), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 71/165 (43%), Gaps = 24/165 (14%)
Query: 94 YTDPLGWKNWLIDKDISQEASSLSSFCQDVRNLDKLYSLIIEQGLIGQGKDRFSIAIDSV 153
+ +P+G+ W+ DI+ E S + +L++ + G G D +S +D
Sbjct: 95 FDEPIGYNGWI---DITLEDGSTKKIRIERAHLEE------DAGKNTHGTDGYSY-VDLN 144
Query: 154 SEMVRHASISSVAGILSNLRSHDQVSSIFWLLHSDLHEIKFTSVLEYLSSMVA----SVE 209
+ V I S A ++RS ++ + L + + V SM S+
Sbjct: 145 RQGVPLIEIVSEA----DMRSPEEAYAYLTALKEIIQYTGISDVKMEEGSMRVDANISLR 200
Query: 210 PFNQAAFGQRVDLENLSMLEQNFRKG-KFHV----RFKRRNGRVR 249
P+ Q AFG + +L+NL+ N RKG +F V + R G +R
Sbjct: 201 PYGQEAFGTKTELKNLNSF-SNVRKGLEFEVERQAKILRSGGVIR 244
>sp|Q4KK14|GSH1_PSEF5 Glutamate--cysteine ligase OS=Pseudomonas fluorescens (strain Pf-5
/ ATCC BAA-477) GN=gshA PE=3 SV=1
Length = 532
Score = 31.6 bits (70), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 41/98 (41%), Gaps = 8/98 (8%)
Query: 142 GKDRFSIAIDSVSEMVRHASISSVAGILSNLRSHDQVSSIFWLLHSDLHEIKFTSVLEYL 201
G D S A+D+ V+ +S++ A +L+ + H + + F L S H EY
Sbjct: 429 GSDVHSKALDAQLAKVKDSSLTPSAQVLAAMSEHKESFTQFSLRQSQAHA-------EYF 481
Query: 202 SSMVASVEPFNQAAFGQRVDLENLSMLEQNFRKGKFHV 239
S S E R LE + LEQN G F V
Sbjct: 482 RSQTLSKEEQAAFEEAARKSLEQQTELEQN-EVGDFDV 518
>sp|C0ME96|GATB_STRS7 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B
OS=Streptococcus equi subsp. zooepidemicus (strain H70)
GN=gatB PE=3 SV=1
Length = 479
Score = 31.6 bits (70), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 71/165 (43%), Gaps = 24/165 (14%)
Query: 94 YTDPLGWKNWLIDKDISQEASSLSSFCQDVRNLDKLYSLIIEQGLIGQGKDRFSIAIDSV 153
+ +P+G+ W+ DI+ E S + +L++ + G G D +S +D
Sbjct: 95 FDEPIGYNGWI---DITLEDGSTKKIRIERAHLEE------DAGKNTHGTDGYSY-VDLN 144
Query: 154 SEMVRHASISSVAGILSNLRSHDQVSSIFWLLHSDLHEIKFTSVLEYLSSMVA----SVE 209
+ V I S A ++RS ++ + L + + V SM S+
Sbjct: 145 RQGVPLIEIVSEA----DMRSPEEAYAYLTALKEIIQYTGISDVKMEEGSMRVDANISLR 200
Query: 210 PFNQAAFGQRVDLENLSMLEQNFRKG-KFHV----RFKRRNGRVR 249
P+ Q AFG + +L+NL+ N RKG +F V + R G +R
Sbjct: 201 PYGQEAFGTKTELKNLNSF-SNVRKGLEFEVERQAKILRSGGVIR 244
>sp|Q3AA34|ADDB_CARHZ ATP-dependent helicase/deoxyribonuclease subunit B
OS=Carboxydothermus hydrogenoformans (strain Z-2901 /
DSM 6008) GN=addB PE=3 SV=1
Length = 1090
Score = 31.6 bits (70), Expect = 7.4, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 24/54 (44%)
Query: 218 QRVDLENLSMLEQNFRKGKFHVRFKRRNGRVRVMCEEILVELAGIKFTPVLSED 271
++V LE ++ Q ++ FHV R RV V L G FTP L D
Sbjct: 565 KKVGLELSPLIRQRLKEDNFHVFLALTRARERVYVSYPRVSLTGESFTPALLVD 618
>sp|Q3K9H0|TAL_PSEPF Transaldolase OS=Pseudomonas fluorescens (strain Pf0-1) GN=tal PE=1
SV=1
Length = 308
Score = 31.2 bits (69), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 109 ISQEASSLSSFCQDVRNLDKLYSLIIEQGLIGQGKDRFSIAIDSVSEMVRHASISSVAGI 168
IS E + SF QD L + + LI G G+DR I I S E +R A I GI
Sbjct: 86 ISTEVDARLSFDQDAV-LKRAHRLIELYDKAGVGRDRVLIKIASTWEGIRAAEILEKEGI 144
Query: 169 LSNL 172
+NL
Sbjct: 145 QTNL 148
>sp|Q6CVU5|MED1_KLULA Mediator of RNA polymerase II transcription subunit 1
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=MED1 PE=3
SV=1
Length = 426
Score = 31.2 bits (69), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 71/167 (42%), Gaps = 16/167 (9%)
Query: 11 DGGLEGEHAPALTIKDSKASPFGFDVFNYVLTQLSNYILAGKSQSRGLVVVAYSRSPSFY 70
D E E L +K AS FD FNY + N +L S + L A+ + +F
Sbjct: 62 DIDYENEMETILDVKLVLAS--NFDKFNYFNEKGENILLTSLSDVQDLK--AFHHNLNFL 117
Query: 71 VDLLKRRGIDIASSHDWIHILDCYTD-PLGWKNWLIDKDIS-----QEASSLSSFCQDVR 124
V L IDI S H + + YTD P ++++ D+ + E S+ D +
Sbjct: 118 VFLDSFSNIDIESGHTSLDLFKYYTDLPKMLQDYISDQHLPFTVKMNENSTFGVSIYDAQ 177
Query: 125 NLDKLYSLIIEQGLIGQGKDR--FSIAIDS-VSEMVRHASISSVAGI 168
K+ ++ +E+ DR + DS + + + +S +S GI
Sbjct: 178 GQTKIMTVDLEK---APNSDRSFYEYVYDSKLKDWLNESSDASTQGI 221
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.137 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 100,297,686
Number of Sequences: 539616
Number of extensions: 3921251
Number of successful extensions: 9206
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 9199
Number of HSP's gapped (non-prelim): 18
length of query: 288
length of database: 191,569,459
effective HSP length: 116
effective length of query: 172
effective length of database: 128,974,003
effective search space: 22183528516
effective search space used: 22183528516
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)