Query 023062
Match_columns 288
No_of_seqs 91 out of 93
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 15:42:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023062.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023062hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a8j_B Elongator complex prote 99.5 5.2E-13 1.8E-17 122.8 17.6 194 19-269 22-234 (270)
2 4a8j_C Elongator complex prote 98.5 9.9E-06 3.4E-10 75.3 20.0 206 15-264 31-277 (280)
3 3bs4_A Uncharacterized protein 98.5 9.2E-06 3.2E-10 74.4 18.0 187 49-263 43-249 (260)
4 2zts_A Putative uncharacterize 98.1 0.00022 7.6E-09 61.0 16.6 215 16-268 26-248 (251)
5 2dr3_A UPF0273 protein PH0284; 97.8 0.00049 1.7E-08 58.8 13.6 181 54-269 50-238 (247)
6 2w0m_A SSO2452; RECA, SSPF, un 97.3 0.014 4.9E-07 48.8 16.4 177 54-266 50-231 (235)
7 2cvh_A DNA repair and recombin 97.2 0.0023 7.9E-08 53.7 9.9 160 53-264 43-218 (220)
8 2i1q_A DNA repair and recombin 97.1 0.013 4.3E-07 53.4 15.3 157 56-263 143-321 (322)
9 2z43_A DNA repair and recombin 96.7 0.021 7.2E-07 52.4 13.2 158 55-263 141-320 (324)
10 1q57_A DNA primase/helicase; d 96.4 0.1 3.6E-06 50.5 16.0 113 145-273 355-488 (503)
11 1v5w_A DMC1, meiotic recombina 96.1 0.051 1.7E-06 50.4 11.7 160 54-264 155-340 (343)
12 3bh0_A DNAB-like replicative h 95.7 0.16 5.6E-06 46.4 13.3 223 16-268 64-309 (315)
13 2ehv_A Hypothetical protein PH 95.2 0.47 1.6E-05 40.1 13.4 180 53-266 57-246 (251)
14 2r6a_A DNAB helicase, replicat 93.9 0.56 1.9E-05 44.9 12.2 111 144-269 313-443 (454)
15 2q6t_A DNAB replication FORK h 93.5 0.42 1.4E-05 45.6 10.4 188 54-267 228-440 (444)
16 4a8j_A Elongator complex prote 93.4 0.33 1.1E-05 46.4 9.5 91 146-243 219-322 (361)
17 1n0w_A DNA repair protein RAD5 93.1 0.24 8E-06 41.9 7.3 157 55-263 58-239 (243)
18 3bgw_A DNAB-like replicative h 93.0 1.2 4.2E-05 42.8 13.0 222 16-268 193-438 (444)
19 3lda_A DNA repair protein RAD5 92.3 2.6 9E-05 40.2 14.1 157 55-264 212-394 (400)
20 3cmu_A Protein RECA, recombina 92.1 0.87 3E-05 52.2 11.9 118 53-210 60-202 (2050)
21 1pzn_A RAD51, DNA repair and r 89.7 6.5 0.00022 36.3 13.8 97 143-263 230-348 (349)
22 1xp8_A RECA protein, recombina 88.4 3.1 0.00011 39.1 10.7 119 54-212 101-244 (366)
23 1tf7_A KAIC; homohexamer, hexa 87.1 6.3 0.00022 38.2 12.3 104 144-266 371-481 (525)
24 3cmw_A Protein RECA, recombina 82.1 4.5 0.00016 45.7 9.7 119 53-210 60-202 (1706)
25 2zr9_A Protein RECA, recombina 80.6 7.7 0.00026 36.0 9.4 118 54-211 88-230 (349)
26 1u94_A RECA protein, recombina 79.4 3.6 0.00012 38.5 6.7 67 145-211 142-232 (356)
27 1cr0_A DNA primase/helicase; R 78.7 8 0.00027 34.0 8.5 113 144-273 147-281 (296)
28 3cmw_A Protein RECA, recombina 75.9 7.4 0.00025 44.0 8.9 150 16-211 379-552 (1706)
29 3cmu_A Protein RECA, recombina 71.3 7 0.00024 44.9 7.4 118 54-211 410-552 (2050)
30 4a74_A DNA repair and recombin 70.0 21 0.00072 29.2 8.5 96 142-263 123-230 (231)
31 1tf7_A KAIC; homohexamer, hexa 63.3 78 0.0027 30.4 12.3 133 55-210 68-209 (525)
32 3hr8_A Protein RECA; alpha and 53.4 33 0.0011 32.1 7.4 66 145-211 140-230 (356)
33 1nlf_A Regulatory protein REPA 50.3 1.2E+02 0.0039 26.2 10.1 25 56-80 69-93 (279)
34 3io5_A Recombination and repai 41.9 59 0.002 30.6 7.1 54 20-81 29-82 (333)
No 1
>4a8j_B Elongator complex protein 5; transcription; 2.10A {Saccharomyces cerevisiae} PDB: 4ejs_B
Probab=99.51 E-value=5.2e-13 Score=122.80 Aligned_cols=194 Identities=13% Similarity=0.154 Sum_probs=123.9
Q ss_pred CCeeEeecCCCCCchhhHHHHHHHHHHHHHHhhccccCcEEEEEecCChHHHHHHHHhcCCCcCCCCCeEEEEecccCCC
Q 023062 19 APALTIKDSKASPFGFDVFNYVLTQLSNYILAGKSQSRGLVVVAYSRSPSFYVDLLKRRGIDIASSHDWIHILDCYTDPL 98 (288)
Q Consensus 19 ap~l~i~dsl~~~~g~~~~~h~~~~l~s~i~a~~~q~~~V~vlafe~spe~y~~~lk~~G~d~~~~~~~v~i~D~fsDPl 98 (288)
.|+.++.|||+-++- .+ +.++....+... +...|.+|+||--- + +. .-=+++||..
T Consensus 22 SPltLvLDSLeQsA~-pL----i~E~i~rak~~~-~k~~IIyvSFETl~--------k---P~----~ad~FI~a~~--- 77 (270)
T 4a8j_B 22 SPFILCLDSIAQTSY-KL----IQEFVHQSKSKG-NEYPIVYISFETVN--------K---PS----YCTQFIDATQ--- 77 (270)
T ss_dssp CSEEEEEEBTTBCSH-HH----HHHHHHHHHHTS-CCCCEEEEESSCCS--------C---CT----TCSEEEETTS---
T ss_pred CCeEEEeecccccCh-HH----HHHHHHHHhhcc-CCCcEEEEEeeccc--------C---CC----CCCeeeEcCC---
Confidence 799999999999955 33 333333333221 23469999999432 0 11 1123566533
Q ss_pred CCcccccCccccccccccccccccccchhhHHHHHHHhh--cccCCCCcEEEEEechhHHHhhCChHHHHHHHHhhhcCC
Q 023062 99 GWKNWLIDKDISQEASSLSSFCQDVRNLDKLYSLIIEQG--LIGQGKDRFSIAIDSVSEMVRHASISSVAGILSNLRSHD 176 (288)
Q Consensus 99 gW~~~~~~~~~~~~~s~~~~~~~~v~~L~sl~~~i~~~~--~~~~~~~~~~VvIDSLs~LL~~~s~~~l~~~L~~L~~~~ 176 (288)
.. +..++..|.... .....+.+.+|+|||||.++. ..+.+||+++.. |
T Consensus 78 ---ks----------------------l~~i~~eI~s~~p~~~~~~~~k~LVIIDSLN~l~~----~~L~~FlsSi~s-P 127 (270)
T 4a8j_B 78 ---MD----------------------FVHLVKQIISYLPAATATQAKKHMVIIDSLNYIST----EYITRFLSEIAS-P 127 (270)
T ss_dssp ---SC----------------------HHHHHHHHHHTCC-----CCCCEEEEESCGGGSCG----GGHHHHHHHHCC-T
T ss_pred ---CC----------------------HHHHHHHHHHhCCCccCCCCcceEEEEecCcchhh----hhHHHHHHHhhc-C
Confidence 11 122222222111 001123467999999999995 589999999985 4
Q ss_pred ceeEEEEEeeCccC-------------CcchHhHHhhhceeEEEEeecCccccccccchhhhhhh----hhcccceeEEE
Q 023062 177 QVSSIFWLLHSDLH-------------EIKFTSVLEYLSSMVASVEPFNQAAFGQRVDLENLSML----EQNFRKGKFHV 239 (288)
Q Consensus 177 ~v~SVv~llH~DLh-------------~p~~l~aL~~LAttvitv~p~~~~~~~~~~~~~~~~~~----~~n~~~~~~~V 239 (288)
-.++||+||+|++ .|.++..|+|||||+++|+|......-.|++-..++-+ .-|...=++.+
T Consensus 128 -~~sLv~vYH~DvP~~~~~~~~~~n~y~Ps~LtLL~ylATTIl~v~~~~~~~~deE~l~~~l~k~~~P~glN~~~f~l~l 206 (270)
T 4a8j_B 128 -HCTMVATYHKDIKDENRTVIPDWNNNYPDKLTLLQFMATTIVDIDVVLTGTLDTEEVSELLNEFRIPRGLNNDIFQLRL 206 (270)
T ss_dssp -TEEEEEEEETTSCCC------CTTBCCCCHHHHHHHHCSEEEEEEECCCSSCCHHHHHHHHHTTCCCSSCSCSEEEEEE
T ss_pred -CcEEEEEecCCCCCCCccccccccCCCCChHHHHHHhhhheEEEecCCCCCccHHHHHHHhhheecccccCCCeEEEEE
Confidence 4689999999987 46788999999999999999977543334333333332 34667778889
Q ss_pred EEecCCCCeeeeEeEEEEEcCceEEEeCCC
Q 023062 240 RFKRRNGRVRVMCEEILVELAGIKFTPVLS 269 (288)
Q Consensus 240 r~kRr~GRV~~~~E~f~i~~~~~~f~~~~~ 269 (288)
..|||+||-.. -.|.|+.+.=.+.-...
T Consensus 207 tnrRKSGRsl~--y~f~ids~~H~Yev~~~ 234 (270)
T 4a8j_B 207 VNKRKSGRSLE--YDFIVNSNTHEYELLST 234 (270)
T ss_dssp EEECTTSCEEE--EEEEEETTTTEEEEC--
T ss_pred EeccccCcceE--EEEEEcCCCceEEEeec
Confidence 99999999753 46777777754444333
No 2
>4a8j_C Elongator complex protein 6; transcription; 2.10A {Saccharomyces cerevisiae} PDB: 4ejs_C
Probab=98.53 E-value=9.9e-06 Score=75.26 Aligned_cols=206 Identities=14% Similarity=0.135 Sum_probs=129.9
Q ss_pred cC-CCCCeeEeecCCCCCchhhHHHHHHHHHHHHHHhhc--------------cccCcEEEEEecCChHHHHHHHHhcCC
Q 023062 15 EG-EHAPALTIKDSKASPFGFDVFNYVLTQLSNYILAGK--------------SQSRGLVVVAYSRSPSFYVDLLKRRGI 79 (288)
Q Consensus 15 ~g-e~ap~l~i~dsl~~~~g~~~~~h~~~~l~s~i~a~~--------------~q~~~V~vlafe~spe~y~~~lk~~G~ 79 (288)
.+ +..-+++|...+.+.. +|++..|.....-+. .....|+++.|-.++++|.+.+||-|+
T Consensus 31 ~~~~~~~L~liT~~~gTsp-----~WLin~lves~L~G~~~~~n~~~~~~~~~~~~~~Vv~~SF~~~~~fy~~~~~Klgi 105 (280)
T 4a8j_C 31 QDSNSHNLFFITHQSCTQP-----LWMINALVETHVLGSPSSLNESSSSMLPSSTRSHAVLASFIHEQNYFTNSLNKLKI 105 (280)
T ss_dssp TSSSCCEEEEEEECTTSCC-----HHHHHHHHHHHHHSSCHHHHCC----CCCCCCCEEEEEESSSCHHHHHHHHHHTTC
T ss_pred CCCCCceEEEEccccCCCh-----HHHHHHHHHHHhcCCcccccccccccccCCCCceEEEEEeecCHHHHHHHHHHhCC
Confidence 55 6777888888885442 344433333333111 122479999999999999999999999
Q ss_pred CcCCCCCeEEEEecccCCCCCcccccCcccccccccccccccc--ccchhhHHHHHHHhhcccCCCCcEEEEEechhHHH
Q 023062 80 DIASSHDWIHILDCYTDPLGWKNWLIDKDISQEASSLSSFCQD--VRNLDKLYSLIIEQGLIGQGKDRFSIAIDSVSEMV 157 (288)
Q Consensus 80 d~~~~~~~v~i~D~fsDPlgW~~~~~~~~~~~~~s~~~~~~~~--v~~L~sl~~~i~~~~~~~~~~~~~~VvIDSLs~LL 157 (288)
|. +++.++|||||..-=+. .+ -|+. ..++.+++..++. .. ..+.+||||..-.||
T Consensus 106 dl----~~f~fvD~~tdl~~~~~-~~-------------kp~~~~l~~v~~~f~~~i~----~~-~~~~vlIldqpdlLL 162 (280)
T 4a8j_C 106 PS----NNYNVLDFLSDFIVNNI-HN-------------KPRDKILSDVLAKFSAAIQ----NN-PTDTIVIIEQPELLL 162 (280)
T ss_dssp CG----GGEEEEESSTTHHHHHT-TT-------------CCHHHHHHHHHHHHHHHHH----TS-TTSEEEEEECGGGHH
T ss_pred Ch----hheeEEEecchhhhhcc-cC-------------CcchhhhHHHHHHHhhhhh----cc-CCCeEEEEcChHHHH
Confidence 95 58999999999872110 01 0111 1333443322221 22 456799999999998
Q ss_pred hh---CChHHH-HHHHHhhhcCCceeEEEEEeeCccCC-------------cchHhHHhhhceeEEEEeecCcccccccc
Q 023062 158 RH---ASISSV-AGILSNLRSHDQVSSIFWLLHSDLHE-------------IKFTSVLEYLSSMVASVEPFNQAAFGQRV 220 (288)
Q Consensus 158 ~~---~s~~~l-~~~L~~L~~~~~v~SVv~llH~DLh~-------------p~~l~aL~~LAttvitv~p~~~~~~~~~~ 220 (288)
-- .....+ ..+|..|++. ..++|.....|.+. ...+..+.|.|+++++|.|++-... |-
T Consensus 163 a~t~~it~~~L~~~~I~~L~k~--~~~lvvt~saD~pli~~~~~t~~~~e~a~f~~~l~H~A~~visLrpL~TG~A--kD 238 (280)
T 4a8j_C 163 SLVSGLTCSELNNKFITPLLRQ--CKVLIIVSNSDIFNIDEYDASVHSSNLQNFYKSSFIKSMINLNLNPLKTGFA--KD 238 (280)
T ss_dssp HHSTTCCHHHHHHHTHHHHHHT--CSEEEEEEECGGGCCSSCCHHHHTHHHHHHHHHHHHHCSEEEEEECCCC--C--CS
T ss_pred HhccCCCHHHHHHHHHHHHHHh--cceEEEEeccCccccccCCCCchHHHHHHHHHHHHHHhheEEeecccCCccc--cc
Confidence 73 466777 8888888863 33455566777653 1567788999999999999866410 00
Q ss_pred chhhhhhhhhcccceeEEEEEecCC-------CCeeeeEeEEEEEcCceEE
Q 023062 221 DLENLSMLEQNFRKGKFHVRFKRRN-------GRVRVMCEEILVELAGIKF 264 (288)
Q Consensus 221 ~~~~~~~~~~n~~~~~~~Vr~kRr~-------GRV~~~~E~f~i~~~~~~f 264 (288)
=-|.++|.+--.. ..|.+..--|+|+.++++.
T Consensus 239 ------------VTGvLrItrGg~~~~~~~~~~~v~E~EyLY~v~~dgVKv 277 (280)
T 4a8j_C 239 ------------VTGSLHVCRGGAPIATSNTSLHVVENEYLYLNEKESTKL 277 (280)
T ss_dssp ------------CCEEEEEEECSSCCCCSCTTCCBCCEEEEEEEETTEEEE
T ss_pred ------------ceEEEEEecCCcccccccccccccceeEEEEEcCCcEEE
Confidence 1277777764422 2355544456666666553
No 3
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=98.47 E-value=9.2e-06 Score=74.35 Aligned_cols=187 Identities=12% Similarity=0.051 Sum_probs=108.9
Q ss_pred HhhccccCcEEEEEecCChHHHHHHHHhcCCCcCCC--CCeEEEEecccCCCCCcccccCcccccccccccccc--cccc
Q 023062 49 LAGKSQSRGLVVVAYSRSPSFYVDLLKRRGIDIASS--HDWIHILDCYTDPLGWKNWLIDKDISQEASSLSSFC--QDVR 124 (288)
Q Consensus 49 ~a~~~q~~~V~vlafe~spe~y~~~lk~~G~d~~~~--~~~v~i~D~fsDPlgW~~~~~~~~~~~~~s~~~~~~--~~v~ 124 (288)
.++..+++.+++++||-+|++++.-++..|+|.... +.++.++|.|+...+...... ..+..+ -+..
T Consensus 43 ~~g~~~Ge~~~~~~~~e~~~~l~~~~~~~G~dl~~~~~~g~l~i~d~~~~~~~~~~~~~---------~v~~~~~e~d~~ 113 (260)
T 3bs4_A 43 SRKLKSDNLVGMFSISYPLQLIIRILSRFGVDVIKYLENHRLAIVDTFGSFHGIKATMP---------GVWYLEGMLSSE 113 (260)
T ss_dssp HHHHHTTCEEEEEECSSCHHHHHHHHHHTTCCHHHHHHTTSEEEECHHHHHHTC---CT---------TEECCCSCCCTT
T ss_pred HHHHHCCCcEEEEEEeCCHHHHHHHHHHcCCCHHHHhhCCcEEEEEccccccccccccc---------ceecccccCCHH
Confidence 356677899999999999999999999999996531 347999999884443322100 000000 0111
Q ss_pred chhhHHHHHHHh-----hccc-CCCCcEEEEEechhHHHhhCChHHHHHHHHhhhcC----------CceeEEEEEeeCc
Q 023062 125 NLDKLYSLIIEQ-----GLIG-QGKDRFSIAIDSVSEMVRHASISSVAGILSNLRSH----------DQVSSIFWLLHSD 188 (288)
Q Consensus 125 ~L~sl~~~i~~~-----~~~~-~~~~~~~VvIDSLs~LL~~~s~~~l~~~L~~L~~~----------~~v~SVv~llH~D 188 (288)
.+-..+..+.+. .+.. .++.+++++||||+.+..-.++.....++.++... ..++. ++++. |
T Consensus 114 ~l~~~i~~iv~~~~~~~~i~~~~~~~rvv~vidsldsl~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~tt-il~~~-~ 191 (260)
T 3bs4_A 114 TLPIKYAKAVEDHKKVWMDLNLFEGRELYGFAISMSGYLEVFTPEETLRYLETSAEVRYGHPAYKKYPRGTN-FWLWE-G 191 (260)
T ss_dssp THHHHHHHHHHHHHHHHHHTTCSTTCCEEEEEETGGGGGGTSCHHHHHHHHHHHHHHHHHCHHHHSSCCCEE-EEEEE-S
T ss_pred HHHHHHHHHHHhhccccchhhccCCceEEEEEeecchHHHHhChhhHHHHHHHHHHhhhhHHHHhccCCcEE-EEEEC-C
Confidence 221112223332 0112 34567778999999886655666666665555322 34444 44455 7
Q ss_pred cCCcchHhHHhhhceeEEEEeecCccccccccchhhhhhhhhcccceeEEEEEecCCCCeeeeEeEEEEEcCceE
Q 023062 189 LHEIKFTSVLEYLSSMVASVEPFNQAAFGQRVDLENLSMLEQNFRKGKFHVRFKRRNGRVRVMCEEILVELAGIK 263 (288)
Q Consensus 189 Lh~p~~l~aL~~LAttvitv~p~~~~~~~~~~~~~~~~~~~~n~~~~~~~Vr~kRr~GRV~~~~E~f~i~~~~~~ 263 (288)
...+.....+.|+|+.||.+.-.... + ...+.-...|.|.+.-.....+|.|..++..
T Consensus 192 ~~~~~~~~~l~~laD~VI~lr~~e~~----------------g-~~rR~L~V~K~Rg~~~~~~~re~~i~~~~~~ 249 (260)
T 3bs4_A 192 VKDKRVLLSVYRRADYVLKTRSSLGE----------------N-GIKRELLVIKTPKPIEELVRFEYEFKGNEPK 249 (260)
T ss_dssp CSCHHHHHHHHHHCSEEEEEEEEEET----------------T-EEEEEEEEEECCC-----CEEEEEEETTEEE
T ss_pred CcccccccceEEEeeEEEEEEEEecC----------------C-ceEEEEEEEECCCCCcCCceEEEEEecCCcc
Confidence 77776678899999999999743221 0 1122333345556666666677998887754
No 4
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=98.06 E-value=0.00022 Score=60.98 Aligned_cols=215 Identities=13% Similarity=0.065 Sum_probs=109.4
Q ss_pred CCCCCeeEeecCCCCCchhhHHHHHHHHHHHHHHhhccccCcEEEEEecCChHHHHHHHHhcCCCcCC--CCCeEEEEec
Q 023062 16 GEHAPALTIKDSKASPFGFDVFNYVLTQLSNYILAGKSQSRGLVVVAYSRSPSFYVDLLKRRGIDIAS--SHDWIHILDC 93 (288)
Q Consensus 16 ge~ap~l~i~dsl~~~~g~~~~~h~~~~l~s~i~a~~~q~~~V~vlafe~spe~y~~~lk~~G~d~~~--~~~~v~i~D~ 93 (288)
|=+++.+++-=--...+-+.+..+++. . +.+..++.++++.+|-+++.+.+-+++.|.+.+. ...++.+.|.
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~----~--~~~~~~~~v~~~s~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 99 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIY----K--GAEEYGEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDG 99 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHH----H--HHHHHCCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC-
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHH----H--HHHhcCCCceeecccCCHHHHHHHHHHcCCChHHHHhcCcchhhhh
Confidence 445555555433344444444444422 1 1223367899999999999999999888776432 1346888998
Q ss_pred ccCCCCCcccccCccccccccccccccccccchhhHHHHHHHhhcccCCCCcEEEEEechhHHHhhC-ChHHHHHHHHhh
Q 023062 94 YTDPLGWKNWLIDKDISQEASSLSSFCQDVRNLDKLYSLIIEQGLIGQGKDRFSIAIDSVSEMVRHA-SISSVAGILSNL 172 (288)
Q Consensus 94 fsDPlgW~~~~~~~~~~~~~s~~~~~~~~v~~L~sl~~~i~~~~~~~~~~~~~~VvIDSLs~LL~~~-s~~~l~~~L~~L 172 (288)
+....+...... + ........+.+...+.+ .....+ +-.|+||+++.+.... ....+..+++.|
T Consensus 100 ~~~~~~~~~~~~-----------~-~~~~~~~~~~~~~~~~~--~~~~~~-~~~vviD~~~~l~~~~~~~~~~~~~~~~L 164 (251)
T 2zts_A 100 VSSVVGLPSEEK-----------F-VLEDRFNVDNFLRYIYR--VVKAIN-AKRLVIDSIPSIALRLEEERKIREVLLKL 164 (251)
T ss_dssp ------------------------------CCHHHHHHHHHH--HHHHTT-CSEEEEECHHHHHHHSSSGGGHHHHHHHH
T ss_pred HHHHhhcccchh-----------c-cccccccHHHHHHHHHH--HHHhcC-CcEEEEEcHHHHhhhccChHHHHHHHHHH
Confidence 876654332211 0 00011122222222222 112222 3378999999997633 345556666666
Q ss_pred hcCCc-e-eEEEEEeeCccC---CcchHhHHhhhceeEEEEeecCccccccccchhhhhhhhhcccceeEEEEEecCCCC
Q 023062 173 RSHDQ-V-SSIFWLLHSDLH---EIKFTSVLEYLSSMVASVEPFNQAAFGQRVDLENLSMLEQNFRKGKFHVRFKRRNGR 247 (288)
Q Consensus 173 ~~~~~-v-~SVv~llH~DLh---~p~~l~aL~~LAttvitv~p~~~~~~~~~~~~~~~~~~~~n~~~~~~~Vr~kRr~GR 247 (288)
+.... . ..++.+.|..-+ .....+.++|+|+++|.++-.... +...-.+.|. |-|++.
T Consensus 165 ~~~a~~~~i~vi~~~q~~~~~~~~~~~~~~~~~~aD~vi~l~~~~~~----------------~~~~R~l~I~-K~R~~~ 227 (251)
T 2zts_A 165 NTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLDLQEKN----------------IELKRYVLIR-KMRETR 227 (251)
T ss_dssp HHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEEEEECS----------------SSEEEEEEEE-EETTCC
T ss_pred HHHHHHcCCCeEEEEEEecccccccccCCceeEEeeEEEEEEEEecC----------------CeEEEEEEEE-EcCCCC
Confidence 65211 1 234444443221 123345789999999999742221 0112234443 446666
Q ss_pred eeeeEeEEEEEcCceEEEeCC
Q 023062 248 VRVMCEEILVELAGIKFTPVL 268 (288)
Q Consensus 248 V~~~~E~f~i~~~~~~f~~~~ 268 (288)
.-...-.|.|.++|+++.|-.
T Consensus 228 ~~~~~~~f~It~~Gi~v~p~~ 248 (251)
T 2zts_A 228 HSMKKYPFEIGPNGIVVYPSG 248 (251)
T ss_dssp CCCBEEEEEEETTEEEECC--
T ss_pred CCCEEEEEEEeCCcEEEeCcc
Confidence 555556699999999876643
No 5
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.77 E-value=0.00049 Score=58.81 Aligned_cols=181 Identities=13% Similarity=0.090 Sum_probs=99.9
Q ss_pred ccCcEEEEEecCChHHHHHHHHhcCCCcCCC--CCeEEEEecccCCCCCcccccCccccccccccccccccccchhhHHH
Q 023062 54 QSRGLVVVAYSRSPSFYVDLLKRRGIDIASS--HDWIHILDCYTDPLGWKNWLIDKDISQEASSLSSFCQDVRNLDKLYS 131 (288)
Q Consensus 54 q~~~V~vlafe~spe~y~~~lk~~G~d~~~~--~~~v~i~D~fsDPlgW~~~~~~~~~~~~~s~~~~~~~~v~~L~sl~~ 131 (288)
+++++.++++|.+++++.+-+++.|++.... ..++.+.|+|..-.+...... .+.. ....+++.+..
T Consensus 50 ~~~~v~~~~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~----------~~~~-~~~~~~~~~~~ 118 (247)
T 2dr3_A 50 MGEPGIYVALEEHPVQVRQNMAQFGWDVKPYEEKGMFAMVDAFTAGIGKSKEYE----------KYIV-HDLTDIREFIE 118 (247)
T ss_dssp TTCCEEEEESSSCHHHHHHHHHTTTCCCHHHHHHTSEEEEECSTTTTCC--CCC----------SCBC-SCCSSHHHHHH
T ss_pred cCCeEEEEEccCCHHHHHHHHHHcCCCHHHHhhCCcEEEEecchhhcccccccc----------cccc-cCccCHHHHHH
Confidence 4679999999999999999888888875321 136899998765443211100 0000 01112233322
Q ss_pred HHHHhhcccCCCCcEEEEEechhHHHhhCChHHHHHHHHhhhcC---CceeEEEEEeeCccCCc---chHhHHhhhceeE
Q 023062 132 LIIEQGLIGQGKDRFSIAIDSVSEMVRHASISSVAGILSNLRSH---DQVSSIFWLLHSDLHEI---KFTSVLEYLSSMV 205 (288)
Q Consensus 132 ~i~~~~~~~~~~~~~~VvIDSLs~LL~~~s~~~l~~~L~~L~~~---~~v~SVv~llH~DLh~p---~~l~aL~~LAttv 205 (288)
.+.++- .+. ++-+|+||+++.++.. +....-+.+..|++. .. ..|+.+-|..-... ++ .+++.++++
T Consensus 119 ~i~~~~--~~~-~~~~vviD~~~~l~~~-~~~~~~~~l~~l~~~~~~~~-~~vi~~~h~~~~~~~~~~~--~~~~~~D~v 191 (247)
T 2dr3_A 119 VLRQAI--RDI-NAKRVVVDSVTTLYIN-KPAMARSIILQLKRVLAGTG-CTSIFVSQVSVGERGFGGP--GVEHGVDGI 191 (247)
T ss_dssp HHHHHH--HHH-TCCEEEEETSGGGTTT-CGGGHHHHHHHHHHHHHHTT-CEEEEEEECC----CCC-C--CHHHHSSEE
T ss_pred HHHHHH--HHh-CCCEEEECCchHhhcC-CHHHHHHHHHHHHHHHHHCC-CeEEEEecCCCCccccccc--ccceeEEEE
Confidence 222211 111 2347999999998732 333344444444431 12 34666667544321 12 377888999
Q ss_pred EEEeecCccccccccchhhhhhhhhcccceeEEEEEecCCCCeeeeEeEEEEEcCceEEEeCCC
Q 023062 206 ASVEPFNQAAFGQRVDLENLSMLEQNFRKGKFHVRFKRRNGRVRVMCEEILVELAGIKFTPVLS 269 (288)
Q Consensus 206 itv~p~~~~~~~~~~~~~~~~~~~~n~~~~~~~Vr~kRr~GRV~~~~E~f~i~~~~~~f~~~~~ 269 (288)
+.++..... +.....+.|. |-|+|......-.|.|.++|+...|...
T Consensus 192 i~L~~~~~~----------------~~~~r~l~v~-K~R~~~~~~~~~~f~i~~~Gi~~~~~~~ 238 (247)
T 2dr3_A 192 IRLDLDEID----------------GELKRSLIVW-KMRGTSHSMRRHPFDITDKGIIVYPDKV 238 (247)
T ss_dssp EEEEEEEET----------------TEEEEEEEEE-EETTSCCCCBCEEEEEETTEEEECTTCC
T ss_pred EEEEEEccC----------------CeeEEEEEEE-ECCCCCCCCceEEEEEcCCCEEEecCcc
Confidence 999743211 0011233332 4466666556778999999988876443
No 6
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.31 E-value=0.014 Score=48.77 Aligned_cols=177 Identities=15% Similarity=0.108 Sum_probs=92.1
Q ss_pred ccCcEEEEEecCChHHHHHHHHhcCCCcCCC-CCeEEEEecccCCCCCcccccCccccccccccccccccccchhhHHHH
Q 023062 54 QSRGLVVVAYSRSPSFYVDLLKRRGIDIASS-HDWIHILDCYTDPLGWKNWLIDKDISQEASSLSSFCQDVRNLDKLYSL 132 (288)
Q Consensus 54 q~~~V~vlafe~spe~y~~~lk~~G~d~~~~-~~~v~i~D~fsDPlgW~~~~~~~~~~~~~s~~~~~~~~v~~L~sl~~~ 132 (288)
++..|.++++|.+++.+.+.+++.|++.... ..++.++|.+....+. .... ... ....+...
T Consensus 50 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---------------~~~-~~~~~~~~ 112 (235)
T 2w0m_A 50 DGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEKKLIIIDALMKEKED-QWSL---------------VNL-TPEELVNK 112 (235)
T ss_dssp HTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTTTEEEEECCC----C-TTBC---------------SSC-CHHHHHHH
T ss_pred CCCeEEEEEcccCHHHHHHHHHHhcchHHHHhhCCEEEEeccccccCc-eeee---------------cCC-CHHHHHHH
Confidence 3568999999999998888887777765331 1257788877654430 0000 000 11121111
Q ss_pred HHHhhcccCCCCcEEEEEechhHHHhh--CChHHHHHHHHhhhcCCceeEEEEEeeCccCCcchH-hHHhhhceeEEEEe
Q 023062 133 IIEQGLIGQGKDRFSIAIDSVSEMVRH--ASISSVAGILSNLRSHDQVSSIFWLLHSDLHEIKFT-SVLEYLSSMVASVE 209 (288)
Q Consensus 133 i~~~~~~~~~~~~~~VvIDSLs~LL~~--~s~~~l~~~L~~L~~~~~v~SVv~llH~DLh~p~~l-~aL~~LAttvitv~ 209 (288)
+.+. +....+.+.+|+||++..++.. .....+.+.|..+.+... ..++.+-|..-.+.+.. ..++++|+.++.++
T Consensus 113 ~~~~-~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~-~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~ 190 (235)
T 2w0m_A 113 VIEA-KQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWN-FTIYATSQYAITTSQAFGFGVEHVADGIIRFR 190 (235)
T ss_dssp HHHH-HHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTT-EEEEEEEC-----------CHHHHCSEEEEEE
T ss_pred HHHH-HHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCC-CeEEEEeccCcccccccccchheeeeEEEEEE
Confidence 1111 1112233349999999998732 123445555555543222 34555555431222212 46889999999997
Q ss_pred ecCccccccccchhhhhhhhhcccceeEEEEEecCCCCeeeeEeEEEEEcC-ceEEEe
Q 023062 210 PFNQAAFGQRVDLENLSMLEQNFRKGKFHVRFKRRNGRVRVMCEEILVELA-GIKFTP 266 (288)
Q Consensus 210 p~~~~~~~~~~~~~~~~~~~~n~~~~~~~Vr~kRr~GRV~~~~E~f~i~~~-~~~f~~ 266 (288)
..... |.....+.|. |-|.+......-.|.|.++ |+.+.+
T Consensus 191 ~~~~~----------------~~~~r~l~v~-K~r~~~~~~~~~~f~i~~~~Gi~~~~ 231 (235)
T 2w0m_A 191 RMIRN----------------GELHRYILIE-KMRQTDHDKHVWEIDIVNGKGIVLKG 231 (235)
T ss_dssp EEEET----------------TEEEEEEEEE-EETTCCCCCSCEEEEEETTTEEEEEE
T ss_pred EEecC----------------CcEEEEEEEE-eccCCcccceeEEEEEcCCCCeEEec
Confidence 53221 1122344444 3355555445678899999 887754
No 7
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.16 E-value=0.0023 Score=53.70 Aligned_cols=160 Identities=11% Similarity=0.146 Sum_probs=87.4
Q ss_pred cccCcEEEEEecC--ChHHHHHHHHhcCCCcCCCCCeEEEEecccCCCCCcccccCccccccccccccccccccchhhHH
Q 023062 53 SQSRGLVVVAYSR--SPSFYVDLLKRRGIDIASSHDWIHILDCYTDPLGWKNWLIDKDISQEASSLSSFCQDVRNLDKLY 130 (288)
Q Consensus 53 ~q~~~V~vlafe~--spe~y~~~lk~~G~d~~~~~~~v~i~D~fsDPlgW~~~~~~~~~~~~~s~~~~~~~~v~~L~sl~ 130 (288)
.+++++.++.+|. +++.+.+.++..|++.....+++.+.+ |.++. ++...+
T Consensus 43 ~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-----------------------~~~~~~ 95 (220)
T 2cvh_A 43 LSGKKVAYVDTEGGFSPERLVQMAETRGLNPEEALSRFILFT----PSDFK-----------------------EQRRVI 95 (220)
T ss_dssp HHCSEEEEEESSCCCCHHHHHHHHHTTTCCHHHHHHHEEEEC----CTTTS-----------------------HHHHHH
T ss_pred HcCCcEEEEECCCCCCHHHHHHHHHhcCCChHHHhhcEEEEe----cCCHH-----------------------HHHHHH
Confidence 3467999999998 888888877766665321112333332 22221 111111
Q ss_pred HHHHHhhcccCCCCcEEEEEechhHHHhhCCh-----HHHHHH---HHhhhcCCceeEEEEEeeCcc------CCcchHh
Q 023062 131 SLIIEQGLIGQGKDRFSIAIDSVSEMVRHASI-----SSVAGI---LSNLRSHDQVSSIFWLLHSDL------HEIKFTS 196 (288)
Q Consensus 131 ~~i~~~~~~~~~~~~~~VvIDSLs~LL~~~s~-----~~l~~~---L~~L~~~~~v~SVv~llH~DL------h~p~~l~ 196 (288)
..+.. +..+ ++-+|+||++..++..... ..+..+ |..+.+... ..++.+-|..- ..|.--.
T Consensus 96 ~~~~~--l~~~--~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~-~~vi~~~h~~~~~~~~~~~p~~~~ 170 (220)
T 2cvh_A 96 GSLKK--TVDS--NFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHN-IPVIVINQVHFDSRTEMTKPVAEQ 170 (220)
T ss_dssp HHHHH--HCCT--TEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHT-CCEEEEECSSSSCTTSSCCSCCCH
T ss_pred HHHHH--Hhhc--CCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcC-CEEEEEeeEEEcCCCCccccCCCc
Confidence 11111 2222 5679999999998754222 344444 444432112 23555555421 1232334
Q ss_pred HHhhhceeEEEEeecCccccccccchhhhhhhhhcccceeEEEEEecCCCCeeeeEeEEEEEcCceEE
Q 023062 197 VLEYLSSMVASVEPFNQAAFGQRVDLENLSMLEQNFRKGKFHVRFKRRNGRVRVMCEEILVELAGIKF 264 (288)
Q Consensus 197 aL~~LAttvitv~p~~~~~~~~~~~~~~~~~~~~n~~~~~~~Vr~kRr~GRV~~~~E~f~i~~~~~~f 264 (288)
.++++|+.++.++..... ....+.|. |.|+|.. -..-.|.|..+|+..
T Consensus 171 ~~~~~~d~vi~l~~~~~~------------------~~r~l~v~-K~r~~~~-~~~~~f~I~~~Gi~~ 218 (220)
T 2cvh_A 171 TLGYRCKDILRLDKLPKP------------------GLRVAVLE-RHRFRPE-GLMAYFRITERGIED 218 (220)
T ss_dssp HHHHTSSEEEEEEECSST------------------TEEEEEEE-ECSSSCT-TCEEEEEEETTEEEE
T ss_pred ceeecCcEEEEEEEecCC------------------CEEEEEEE-eCCCCCC-CceEEEEEeCCceec
Confidence 899999999999854321 22344443 5566654 445689999888765
No 8
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.15 E-value=0.013 Score=53.38 Aligned_cols=157 Identities=12% Similarity=0.099 Sum_probs=86.8
Q ss_pred CcEEEEEecCC--hHHHHHHHHhcCCCcCCCCCeEEEEecccCCCCCcccccCccccccccccccccccccchhhHHHHH
Q 023062 56 RGLVVVAYSRS--PSFYVDLLKRRGIDIASSHDWIHILDCYTDPLGWKNWLIDKDISQEASSLSSFCQDVRNLDKLYSLI 133 (288)
Q Consensus 56 ~~V~vlafe~s--pe~y~~~lk~~G~d~~~~~~~v~i~D~fsDPlgW~~~~~~~~~~~~~s~~~~~~~~v~~L~sl~~~i 133 (288)
+.|.++.+|.+ ++.+.+-+++.|++.+..-+++.+.+.++ .... ...+..+..
T Consensus 143 ~~v~yi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~~----~~~~----------------~~~l~~l~~----- 197 (322)
T 2i1q_A 143 PKAVYIDTEGTFRPERIMQMAEHAGIDGQTVLDNTFVARAYN----SDMQ----------------MLFAEKIED----- 197 (322)
T ss_dssp EEEEEEESSSCCCHHHHHHHHHHHTCCHHHHHHTEEEEECSS----HHHH----------------HHHHHTHHH-----
T ss_pred ceEEEEECCCCCCHHHHHHHHHHcCCCHHHHhcCEEEEeCCC----HHHH----------------HHHHHHHHH-----
Confidence 68999999997 88888888888887532113566655321 1000 000111222
Q ss_pred HHhhcccCCCCcEEEEEechhHHHhhCC---------hHHHHHHHHhhhcCC-ce-eEEEEEee--CccC-------Ccc
Q 023062 134 IEQGLIGQGKDRFSIAIDSVSEMVRHAS---------ISSVAGILSNLRSHD-QV-SSIFWLLH--SDLH-------EIK 193 (288)
Q Consensus 134 ~~~~~~~~~~~~~~VvIDSLs~LL~~~s---------~~~l~~~L~~L~~~~-~v-~SVv~llH--~DLh-------~p~ 193 (288)
...+..++-+||||||+.+....- ...+.++++.|+... .. ..||.+-| .+.. .|.
T Consensus 198 ----~~~~~~~~~lvVIDsl~~l~~~~~~~~~~~~~r~~~~~~~~~~L~~la~~~~~~vi~~nq~~~~~~~~~g~~~~~~ 273 (322)
T 2i1q_A 198 ----LIQEGNNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATLNKLADLFNCVVLVTNQVSAKPDAFFGMAEQAI 273 (322)
T ss_dssp ----HHHTTCEEEEEEEECSSHHHHHHCCCTTSHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECEECC-------CCEES
T ss_pred ----HHhhccCccEEEEECcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECceeecCCCCCCCCcCCC
Confidence 122323456999999999986311 124566777776521 11 23444433 2222 133
Q ss_pred hHhHHhhhceeEEEEeecCccccccccchhhhhhhhhcccceeEEEEEecCCCCeeeeEeEEEEEcCceE
Q 023062 194 FTSVLEYLSSMVASVEPFNQAAFGQRVDLENLSMLEQNFRKGKFHVRFKRRNGRVRVMCEEILVELAGIK 263 (288)
Q Consensus 194 ~l~aL~~LAttvitv~p~~~~~~~~~~~~~~~~~~~~n~~~~~~~Vr~kRr~GRV~~~~E~f~i~~~~~~ 263 (288)
--.+++|.+++++.++.... ..-.++ ..|-|++. ...+ .|.|..+|+.
T Consensus 274 g~~~~~~~~d~~i~l~~~~~-------------------~~r~~~-v~k~~~~p-~~~~-~f~I~~~Gi~ 321 (322)
T 2i1q_A 274 GGHIVGHAATFRFFVRKGKG-------------------DKRVAK-LYDSPHLP-DAEA-IFRITEKGIQ 321 (322)
T ss_dssp SHHHHHHHCSEEEEEEECST-------------------TEEEEE-EEECSSSC-CEEE-EEEEETTEEE
T ss_pred CcHHHHhcCcEEEEEEecCC-------------------CeEEEE-EEECCCCC-CeEE-EEEEeCCCcC
Confidence 34589999999999984321 111232 33446663 2333 8999988764
No 9
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.75 E-value=0.021 Score=52.39 Aligned_cols=158 Identities=13% Similarity=0.052 Sum_probs=79.3
Q ss_pred cCcEEEEEecCC--hHHHHHHHHhcCCCcCCCCCeEEEEecccCCCCCcccccCccccccccccccccccccchhhHHHH
Q 023062 55 SRGLVVVAYSRS--PSFYVDLLKRRGIDIASSHDWIHILDCYTDPLGWKNWLIDKDISQEASSLSSFCQDVRNLDKLYSL 132 (288)
Q Consensus 55 ~~~V~vlafe~s--pe~y~~~lk~~G~d~~~~~~~v~i~D~fsDPlgW~~~~~~~~~~~~~s~~~~~~~~v~~L~sl~~~ 132 (288)
+..+.++.+|.+ ++.+.+.+++.|++.+..-+++.+.+.++ . .++..++..
T Consensus 141 ~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~~----~-----------------------~~~~~~l~~ 193 (324)
T 2z43_A 141 SGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAIN----T-----------------------DHQIAIVDD 193 (324)
T ss_dssp SCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCS----H-----------------------HHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCCC----H-----------------------HHHHHHHHH
Confidence 568999999987 88888888888887532113455554321 0 001111111
Q ss_pred HHHhhcccCCCCcEEEEEechhHHHhhC-----C----hHHHHHHHHhhhcCCc-e-eEEEEEeeC--ccC-------Cc
Q 023062 133 IIEQGLIGQGKDRFSIAIDSVSEMVRHA-----S----ISSVAGILSNLRSHDQ-V-SSIFWLLHS--DLH-------EI 192 (288)
Q Consensus 133 i~~~~~~~~~~~~~~VvIDSLs~LL~~~-----s----~~~l~~~L~~L~~~~~-v-~SVv~llH~--DLh-------~p 192 (288)
+.+ +..+..++-+|||||++.+.... . ...+.++++.|+.... . ..||.+-|. +.. .|
T Consensus 194 l~~--~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~~~~~~~~~~~~~~~ 271 (324)
T 2z43_A 194 LQE--LVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVMARPDMFYGDPTVA 271 (324)
T ss_dssp HHH--HHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC--------------
T ss_pred HHH--HHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcceeecCCCcCCCCCCC
Confidence 111 12222346699999999998631 1 1236677777765211 1 224444332 222 12
Q ss_pred chHhHHhhhceeEEEEeecCccccccccchhhhhhhhhcccceeEEEEEecCCCCeeeeEeEEEEEcCceE
Q 023062 193 KFTSVLEYLSSMVASVEPFNQAAFGQRVDLENLSMLEQNFRKGKFHVRFKRRNGRVRVMCEEILVELAGIK 263 (288)
Q Consensus 193 ~~l~aL~~LAttvitv~p~~~~~~~~~~~~~~~~~~~~n~~~~~~~Vr~kRr~GRV~~~~E~f~i~~~~~~ 263 (288)
.--.+++|.+++++.++.... ....++| .|-|.+. .... .|.|..+|+.
T Consensus 272 ~gg~~l~~~~d~~l~l~r~~~-------------------~~r~~~v-~k~~~~p-~~~~-~f~I~~~Gi~ 320 (324)
T 2z43_A 272 VGGHTLYHVPGIRIQLKKSRG-------------------NRRIARV-VDAPHLP-EGEV-VFALTEEGIR 320 (324)
T ss_dssp ----------CEEEEEEECST-------------------TEEEEEE-EECSSSC-CEEE-EEEEETTEEE
T ss_pred CchHHHHhhCcEEEEEEEcCC-------------------CeEEEEE-EECCCCC-ceEE-EEEEeCCCcc
Confidence 223479999999999984221 1223333 3445553 2333 8999988875
No 10
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.36 E-value=0.1 Score=50.45 Aligned_cols=113 Identities=13% Similarity=0.106 Sum_probs=63.5
Q ss_pred cEEEEEechhHHHhh----CChHHHHHHHHhhhcCCc-e-eEEEEEeeCcc-C--------------CcchHhHHhhhce
Q 023062 145 RFSIAIDSVSEMVRH----ASISSVAGILSNLRSHDQ-V-SSIFWLLHSDL-H--------------EIKFTSVLEYLSS 203 (288)
Q Consensus 145 ~~~VvIDSLs~LL~~----~s~~~l~~~L~~L~~~~~-v-~SVv~llH~DL-h--------------~p~~l~aL~~LAt 203 (288)
+-+||||+|..+-.. .....+..+++.|+.... . ..|+.+-|.-= . +-.-.+++++.|+
T Consensus 355 ~~lvVID~l~~l~~~~~~~~~~~~~~~~~~~Lk~lak~~~i~vi~~~q~~r~~~~~~~~~~~~p~l~dlr~s~~ie~~aD 434 (503)
T 1q57_A 355 CDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSD 434 (503)
T ss_dssp CSEEEEECTTCCCSCCSCCCHHHHHHHHHHHHHHHHHHHTCEEEEEEECCCCSSSSCSTTCCCCCSSSCSSSSHHHHHCS
T ss_pred CCEEEEccchhcCCCCCCCCHHHHHHHHHHHHHHHHHHHCCeEEEEEcCCchhccCccccCCCCChhhhccchHhhecCc
Confidence 448999999976322 112445556666655211 1 24566666431 1 1122478999999
Q ss_pred eEEEEeecCccccccccchhhhhhhhhcccceeEEEEEecCCCCeeeeEeEEEEEcCceEEEeCCCcchh
Q 023062 204 MVASVEPFNQAAFGQRVDLENLSMLEQNFRKGKFHVRFKRRNGRVRVMCEEILVELAGIKFTPVLSEDEI 273 (288)
Q Consensus 204 tvitv~p~~~~~~~~~~~~~~~~~~~~n~~~~~~~Vr~kRr~GRV~~~~E~f~i~~~~~~f~~~~~~~~~ 273 (288)
+++.++..... + +.+...+.|...|.+|..-. .-.+.++....+|.+++..+.+
T Consensus 435 ~vi~l~r~~~~--------~-------~~~~~~l~v~K~R~~G~~g~-~~~l~f~~~~~~f~~~~~~~~~ 488 (503)
T 1q57_A 435 TIIALERNQQG--------D-------MPNLVLVRILKCRFTGDTGI-AGYMEYNKETGWLEPSSYSGEE 488 (503)
T ss_dssp EEEEEEECSSS--------S-------CTTEEEEEEEEETTTCCCEE-EEEEEECTTTCCEEEECCCC--
T ss_pred EEEEEEeCCcC--------C-------CCCeEEEEEEeccCCCCCCc-eEEEEEEcCCceEecCCCCCcc
Confidence 99999854321 0 01223444443333785422 2256778888899888876655
No 11
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.09 E-value=0.051 Score=50.42 Aligned_cols=160 Identities=15% Similarity=0.123 Sum_probs=85.2
Q ss_pred ccCcEEEEEecCC--hHHHHHHHHhcCCCcCCCCCeEEEEecccCCCCCcccccCccccccccccccccccccchhhHHH
Q 023062 54 QSRGLVVVAYSRS--PSFYVDLLKRRGIDIASSHDWIHILDCYTDPLGWKNWLIDKDISQEASSLSSFCQDVRNLDKLYS 131 (288)
Q Consensus 54 q~~~V~vlafe~s--pe~y~~~lk~~G~d~~~~~~~v~i~D~fsDPlgW~~~~~~~~~~~~~s~~~~~~~~v~~L~sl~~ 131 (288)
++..+.++.+|.+ ++.+.+.+++.|++....-+++.+.+++ +.. ++..++.
T Consensus 155 ~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~----~~e-----------------------~~~~ll~ 207 (343)
T 1v5w_A 155 PGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAY----TSE-----------------------HQMELLD 207 (343)
T ss_dssp CCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC----STT-----------------------HHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeecC----CHH-----------------------HHHHHHH
Confidence 3578999999996 8888888888888753111345554432 111 1111111
Q ss_pred HHHHhhcccCC-CCcEEEEEechhHHHhhC-C--------hHHHHHHHHhhhcCCc-e-eEEEEEeeC--ccCC------
Q 023062 132 LIIEQGLIGQG-KDRFSIAIDSVSEMVRHA-S--------ISSVAGILSNLRSHDQ-V-SSIFWLLHS--DLHE------ 191 (288)
Q Consensus 132 ~i~~~~~~~~~-~~~~~VvIDSLs~LL~~~-s--------~~~l~~~L~~L~~~~~-v-~SVv~llH~--DLh~------ 191 (288)
.+.+ +..+. .+.-+|||||++.+.... . ...+.++++.|+.... . ..||.+-|. +...
T Consensus 208 ~l~~--~i~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~~~~~~~~~~~~g 285 (343)
T 1v5w_A 208 YVAA--KFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTADPGATMTFQA 285 (343)
T ss_dssp HHHH--HHHHSCSSEEEEEEETSGGGHHHHCCGGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC------------
T ss_pred HHHH--HHHhcCCCccEEEEechHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeeceecCCCccccCC
Confidence 1111 11221 345699999999998642 1 1135666666665211 1 224444332 2211
Q ss_pred -c-chHh--HHhhhceeEEEEeecCccccccccchhhhhhhhhcccceeEEEEEecCCCCeeeeEeEEEEEcCceEE
Q 023062 192 -I-KFTS--VLEYLSSMVASVEPFNQAAFGQRVDLENLSMLEQNFRKGKFHVRFKRRNGRVRVMCEEILVELAGIKF 264 (288)
Q Consensus 192 -p-~~l~--aL~~LAttvitv~p~~~~~~~~~~~~~~~~~~~~n~~~~~~~Vr~kRr~GRV~~~~E~f~i~~~~~~f 264 (288)
+ .+.+ +++|.+++++.++-... ....++| .|-|++. .... .|.|...|+..
T Consensus 286 ~~~~~~gg~~i~~~ad~~l~l~r~~~-------------------~~r~~~v-~K~r~~p-~~~~-~f~I~~~Gi~~ 340 (343)
T 1v5w_A 286 DPKKPIGGHILAHASTTRISLRKGRG-------------------ELRIAKI-YDSPEMP-ENEA-TFAITAGGIGD 340 (343)
T ss_dssp -------CCTTTTSSSEEEEEEESST-------------------TEEEEEE-EECTTCC-SSCE-EEEEETTEEEE
T ss_pred CCCcCCchHHHHHhCCEEEEEEEcCC-------------------CEEEEEE-EECCCCC-CeeE-EEEEeCCCccC
Confidence 1 1222 69999999999984211 1233444 3445563 2333 89999988764
No 12
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.73 E-value=0.16 Score=46.36 Aligned_cols=223 Identities=9% Similarity=0.041 Sum_probs=105.9
Q ss_pred CCCCCeeEeecCCCCCchhhHHHHHHHHHHHHHHhhccccCcEEEEEecCChHHHHHHHHhc--CCCcCCCCCeEEEEec
Q 023062 16 GEHAPALTIKDSKASPFGFDVFNYVLTQLSNYILAGKSQSRGLVVVAYSRSPSFYVDLLKRR--GIDIASSHDWIHILDC 93 (288)
Q Consensus 16 ge~ap~l~i~dsl~~~~g~~~~~h~~~~l~s~i~a~~~q~~~V~vlafe~spe~y~~~lk~~--G~d~~~~~~~v~i~D~ 93 (288)
|=+++-+.+----...+=+.+..+++. .+ +.+++.|.++.+|-+++++.+-+... |++.. ++. +.
T Consensus 64 Gl~~G~l~li~G~pG~GKTtl~l~ia~----~~---a~~g~~vl~~slE~s~~~l~~R~~~~~~~i~~~----~l~--~~ 130 (315)
T 3bh0_A 64 GYKRRNFVLIAARPSMGKTAFALKQAK----NM---SDNDDVVNLHSLEMGKKENIKRLIVTAGSINAQ----KIK--AA 130 (315)
T ss_dssp SBCTTCEEEEECCTTSSHHHHHHHHHH----HH---HTTTCEEEEEESSSCHHHHHHHHHHHHTTCCHH----HHH--SC
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHH----HH---HHcCCeEEEEECCCCHHHHHHHHHHHHcCCCHH----HHh--cC
Confidence 444454444333344444444444422 22 23457999999999999888766543 55521 110 11
Q ss_pred c--cCCCCCcccccCcccccccccccccccc-ccchhhHHHHHHHhhcccCCCCcEEEEEechhHHHhhC----ChHHHH
Q 023062 94 Y--TDPLGWKNWLIDKDISQEASSLSSFCQD-VRNLDKLYSLIIEQGLIGQGKDRFSIAIDSVSEMVRHA----SISSVA 166 (288)
Q Consensus 94 f--sDPlgW~~~~~~~~~~~~~s~~~~~~~~-v~~L~sl~~~i~~~~~~~~~~~~~~VvIDSLs~LL~~~----s~~~l~ 166 (288)
. =++-.|..-..-...... ..+-+... --.++.+.+.+.++. ...+.++.+||||+|..|-... ....+.
T Consensus 131 ~~~l~~~~~~~l~~a~~~l~~--~~i~i~d~~~~~~~~i~~~i~~l~-~~~~~~~~lVVID~l~~l~~~~~~~~r~~~i~ 207 (315)
T 3bh0_A 131 RRDFASEDWGKLSMAIGEISN--SNINIFDKAGQSVNYIWSKTRQTK-RKNPGKRVIVMIDYLQLLEPAKANDSRTNQIS 207 (315)
T ss_dssp HHHHCSSCHHHHHHHHHHHHT--SCEEEECCSCCBHHHHHHHHHHHH-HTSSSCCEEEEEECGGGSBCSCTTSCHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHhC--CCEEEECCCCCCHHHHHHHHHHHH-HhcCCCCeEEEEeCchhcCCCCCCCCHHHHHH
Confidence 1 122334210000000000 00101000 012333333333321 1223344589999999885321 124556
Q ss_pred HHHHhhhcCCc-e-eEEEEEee--CccCC-----c-----chHhHHhhhceeEEEEeecCccccccccchhhhhhhhhcc
Q 023062 167 GILSNLRSHDQ-V-SSIFWLLH--SDLHE-----I-----KFTSVLEYLSSMVASVEPFNQAAFGQRVDLENLSMLEQNF 232 (288)
Q Consensus 167 ~~L~~L~~~~~-v-~SVv~llH--~DLh~-----p-----~~l~aL~~LAttvitv~p~~~~~~~~~~~~~~~~~~~~n~ 232 (288)
.+++.|+.... . ..|+++-| .+... | .-.+++++.|++++.++.... |.+.- .+.
T Consensus 208 ~~~~~Lk~lAk~~~i~vi~lsql~r~~e~r~~~~p~l~dlr~sg~ie~~aD~vi~L~r~~~---~~~~~--------~~~ 276 (315)
T 3bh0_A 208 QISRDLKKMARELDVVVIALSQLSRQVEQRQDKRPMLSDLRESGQLEQDADIIEFLYRDDY---YDKES--------ESK 276 (315)
T ss_dssp HHHHHHHHHHHHHTCEEEEEECCCGGGTTSSSCCCCGGGGTTTSHHHHHCSEEEEEEEHHH---HCTTC--------TTT
T ss_pred HHHHHHHHHHHHhCCeEEEEeecCcccccCCCCCCCHHHhhhhhhhHhhCCEEEEEecccc---cCccc--------cCC
Confidence 66666665211 1 23555655 23321 1 223689999999999985321 11000 001
Q ss_pred cceeEEEEEecCCCCeeeeEeEEEEEcCceEEEeCC
Q 023062 233 RKGKFHVRFKRRNGRVRVMCEEILVELAGIKFTPVL 268 (288)
Q Consensus 233 ~~~~~~Vr~kRr~GRV~~~~E~f~i~~~~~~f~~~~ 268 (288)
+...+.| .|.|+|..- .-.+.+.+...+|...+
T Consensus 277 ~~~~l~v-~K~R~G~~g--~~~l~f~~~~~~f~~~~ 309 (315)
T 3bh0_A 277 NIVEVII-AKHRDGPVG--TVSLAFIKEYGNFVNLE 309 (315)
T ss_dssp TEEEEEE-EEETTSCCE--EEEEEEEGGGTEEEECC
T ss_pred CcEEEEE-ECCcCCCCc--eEEEEEECCCCeEecCC
Confidence 2233333 355788743 33478888889998754
No 13
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.15 E-value=0.47 Score=40.09 Aligned_cols=180 Identities=14% Similarity=0.055 Sum_probs=91.2
Q ss_pred cccCcEEEEEecCChHHHHHHHHhcCCCcCC--CCCeEEEEecccCCCCCcccccCccccccccccccccccccchhhHH
Q 023062 53 SQSRGLVVVAYSRSPSFYVDLLKRRGIDIAS--SHDWIHILDCYTDPLGWKNWLIDKDISQEASSLSSFCQDVRNLDKLY 130 (288)
Q Consensus 53 ~q~~~V~vlafe~spe~y~~~lk~~G~d~~~--~~~~v~i~D~fsDPlgW~~~~~~~~~~~~~s~~~~~~~~v~~L~sl~ 130 (288)
.+++++.++..+.+++...+.+++.|++... ...++.+.|.+..+.+...... .... ...++..+.
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~-~~~~~~~~~ 124 (251)
T 2ehv_A 57 EYGEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVSSVVGLPSEEK-----------FVLE-DRFNVDNFL 124 (251)
T ss_dssp HHCCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC-------------------------------CCHHHHH
T ss_pred hCCCeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEEEEEccccccccccccc-----------eecc-CcccHHHHH
Confidence 3467889999999999888888877776432 1235888888776543211100 0000 001122221
Q ss_pred HHHHHhhcccCCCCcEEEEEechhHHHhh-----CChHHHHHHHHhhhcCCceeEEEEEeeCccCC--cchHhHHhhhc-
Q 023062 131 SLIIEQGLIGQGKDRFSIAIDSVSEMVRH-----ASISSVAGILSNLRSHDQVSSIFWLLHSDLHE--IKFTSVLEYLS- 202 (288)
Q Consensus 131 ~~i~~~~~~~~~~~~~~VvIDSLs~LL~~-----~s~~~l~~~L~~L~~~~~v~SVv~llH~DLh~--p~~l~aL~~LA- 202 (288)
..+.. .... .+|-++++|+.+.++.. ..-..+..+++.++.. . .+|+..-|.--.. ...-..+++++
T Consensus 125 ~~~~~--~l~~-~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~-g-~tii~vtH~~~~~~~~~~~~~i~~~~a 199 (251)
T 2ehv_A 125 RYIYR--VVKA-INAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEM-G-VTTILTTEAPDPQHGKLSRYGIEEFIA 199 (251)
T ss_dssp HHHHH--HHHH-TTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHH-C-CEEEEEECCC----CCSSSSSCGGGGC
T ss_pred HHHHH--HHHh-hCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHC-C-CeEEEEECCCCCCcccccccChhhEee
Confidence 11111 1111 23458999999999962 2222366666666542 1 3455555542111 11112347787
Q ss_pred eeEEEEeecCccccccccchhhhhhhhhcccceeEEEEEecCCCCeeeeEeEEEEEcCceEEEe
Q 023062 203 SMVASVEPFNQAAFGQRVDLENLSMLEQNFRKGKFHVRFKRRNGRVRVMCEEILVELAGIKFTP 266 (288)
Q Consensus 203 ttvitv~p~~~~~~~~~~~~~~~~~~~~n~~~~~~~Vr~kRr~GRV~~~~E~f~i~~~~~~f~~ 266 (288)
+.++.+.-.... +.....+.|. |-|.++.....-.|.|.+.|+.+.|
T Consensus 200 D~vi~l~~~~~~----------------~~~~r~l~i~-K~r~~~~~~~~~~~~i~~~Gi~v~~ 246 (251)
T 2ehv_A 200 RGVIVLDLQEKN----------------IELKRYVLIR-KMRETRHSMKKYPFEIGPNGIVVYP 246 (251)
T ss_dssp SEEEEEEEEECS----------------SSEEEEEEEE-EETTCCCCCBEEEEEEETTEEEECC
T ss_pred eEEEEEeeeccC----------------CeeEEEEEEE-EccCCCcCCceEEEEECCCCeEEcC
Confidence 999988632111 0012334444 3355555556778999998888776
No 14
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=93.93 E-value=0.56 Score=44.88 Aligned_cols=111 Identities=16% Similarity=0.095 Sum_probs=62.0
Q ss_pred CcEEEEEechhHHHhh-----CChHHHHHHHHhhhcCC-ce-eEEEEEee--CccCC-----cc-----hHhHHhhhcee
Q 023062 144 DRFSIAIDSVSEMVRH-----ASISSVAGILSNLRSHD-QV-SSIFWLLH--SDLHE-----IK-----FTSVLEYLSSM 204 (288)
Q Consensus 144 ~~~~VvIDSLs~LL~~-----~s~~~l~~~L~~L~~~~-~v-~SVv~llH--~DLh~-----p~-----~l~aL~~LAtt 204 (288)
++-+||||++..+... .....+..+++.|+... .. ..|+++-| .+... |. -.+++++.|++
T Consensus 313 ~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~ 392 (454)
T 2r6a_A 313 GLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADI 392 (454)
T ss_dssp CCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSE
T ss_pred CCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCE
Confidence 3559999999998742 23445556666665421 11 23666766 22221 21 12489999999
Q ss_pred EEEEeecCccccccccchhhhhhhhhcccceeEEEE-EecCCCCeeeeEeEEEEEcCceEEEeCCC
Q 023062 205 VASVEPFNQAAFGQRVDLENLSMLEQNFRKGKFHVR-FKRRNGRVRVMCEEILVELAGIKFTPVLS 269 (288)
Q Consensus 205 vitv~p~~~~~~~~~~~~~~~~~~~~n~~~~~~~Vr-~kRr~GRV~~~~E~f~i~~~~~~f~~~~~ 269 (288)
++.++.... |.++. ..++...++ .|-|+|..-. -.+.+.+...+|...+.
T Consensus 393 vi~l~r~~~---~~~~~----------~~~~~~~l~i~K~R~G~~g~--v~l~f~~~~~~f~~~~~ 443 (454)
T 2r6a_A 393 VAFLYRDDY---YNKDS----------ENKNIIEIIIAKQRNGPVGT--VQLAFIKEYNKFVNLER 443 (454)
T ss_dssp EEEEEETTC--------------------CCEEEEEEEEESSSCCEE--EEEEEETTTTEEECC--
T ss_pred EEEEecccc---cCccc----------CCCCeEEEEEecccCCCCeE--EEEEEEcCccEEeCCCC
Confidence 999985432 11110 012333333 3447886532 36778888899987754
No 15
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=93.47 E-value=0.42 Score=45.64 Aligned_cols=188 Identities=13% Similarity=0.076 Sum_probs=91.0
Q ss_pred ccCcEEEEEecCChHHHHHHHH--hcCCCcCCCCCeEEEEecccCCCCCcccccCcccccccccccccccc-ccchhhHH
Q 023062 54 QSRGLVVVAYSRSPSFYVDLLK--RRGIDIASSHDWIHILDCYTDPLGWKNWLIDKDISQEASSLSSFCQD-VRNLDKLY 130 (288)
Q Consensus 54 q~~~V~vlafe~spe~y~~~lk--~~G~d~~~~~~~v~i~D~fsDPlgW~~~~~~~~~~~~~s~~~~~~~~-v~~L~sl~ 130 (288)
++..|.++.+|-+++++..-+- ..|++... +. .+.-++..|.+-....+.... ..+-+... --.+..+.
T Consensus 228 ~g~~vl~~slE~~~~~l~~R~~~~~~~i~~~~----l~--~g~l~~~~~~~~~~a~~~l~~--~~l~i~d~~~~s~~~l~ 299 (444)
T 2q6t_A 228 EGVGVGIYSLEMPAAQLTLRMMCSEARIDMNR----VR--LGQLTDRDFSRLVDVASRLSE--APIYIDDTPDLTLMEVR 299 (444)
T ss_dssp TCCCEEEEESSSCHHHHHHHHHHHHTTCCTTT----CC--GGGCCHHHHHHHHHHHHHHHT--SCEEEECCTTCBHHHHH
T ss_pred CCCeEEEEECCCCHHHHHHHHHHHHcCCCHHH----Hh--CCCCCHHHHHHHHHHHHHHhc--CCEEEECCCCCCHHHHH
Confidence 3678999999999998877532 45666422 21 222223334321000000000 00101000 00122222
Q ss_pred HHHHHhhcccCCCCcEEEEEechhHHHhh-------CChHHHHHHHHhhhcCCc-e-eEEEEEee--CccCC-----c--
Q 023062 131 SLIIEQGLIGQGKDRFSIAIDSVSEMVRH-------ASISSVAGILSNLRSHDQ-V-SSIFWLLH--SDLHE-----I-- 192 (288)
Q Consensus 131 ~~i~~~~~~~~~~~~~~VvIDSLs~LL~~-------~s~~~l~~~L~~L~~~~~-v-~SVv~llH--~DLh~-----p-- 192 (288)
+.+.. +..+. ++-+||||+|..+... .....+..+++.|+.... . ..|+++-| .+... |
T Consensus 300 ~~~~~--l~~~~-~~~lIvID~l~~~~~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~~~p~l 376 (444)
T 2q6t_A 300 ARARR--LVSQN-QVGLIIIDYLQLMSGPGSGKSGENRQQEIAAISRGLKALARELGIPIIALSQLSRAVEARPNKRPML 376 (444)
T ss_dssp HHHHH--HHHHS-CCCEEEEECGGGCBCC-------CHHHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGGSSSSCSCCG
T ss_pred HHHHH--HHHHc-CCCEEEEcChhhcCCCcCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCCh
Confidence 22222 22222 3458999999998532 112345556666654211 1 23555555 22221 2
Q ss_pred ---chHhHHhhhceeEEEEeecCccccccccchhhhhhhhhcccceeEEEE-EecCCCCeeeeEeEEEEEcCceEEEeC
Q 023062 193 ---KFTSVLEYLSSMVASVEPFNQAAFGQRVDLENLSMLEQNFRKGKFHVR-FKRRNGRVRVMCEEILVELAGIKFTPV 267 (288)
Q Consensus 193 ---~~l~aL~~LAttvitv~p~~~~~~~~~~~~~~~~~~~~n~~~~~~~Vr-~kRr~GRV~~~~E~f~i~~~~~~f~~~ 267 (288)
.-.+++++.|++++.++.... |.++ +..++...+. .|-|+|..- .-.+.+.+...+|...
T Consensus 377 ~dlr~Sg~ie~~aD~vi~L~r~~~---~~~~----------~~~~~~~~l~i~K~R~g~~g--~~~l~f~~~~~~f~~~ 440 (444)
T 2q6t_A 377 SDLRESGSIEQDADLVMFIYRDEY---YNPH----------SEKAGIAEIIVGKQRNGPTG--TVELQFHASHVRFNDL 440 (444)
T ss_dssp GGGGGGCTTGGGCSEEEEEEEGGG---TCSS----------SSCCSEEEEEEEECSSSCCE--EEEEEEETTTTEEECC
T ss_pred HHhcchhHHHHhCCEEEEEecccc---cCCc----------CCCCCeEEEEEEecCCCCce--EEEEEEECCccEEecC
Confidence 123489999999999985322 1110 0012333333 345788653 2367788888888765
No 16
>4a8j_A Elongator complex protein 4; transcription; 2.10A {Saccharomyces cerevisiae} PDB: 4ejs_A
Probab=93.42 E-value=0.33 Score=46.42 Aligned_cols=91 Identities=21% Similarity=0.274 Sum_probs=64.6
Q ss_pred EEEEEechhHHHhhC----ChHHHHHHHHhhhc----CCceeEEEEEeeCccCCcchHhHHhhhceeEEEEeecCccccc
Q 023062 146 FSIAIDSVSEMVRHA----SISSVAGILSNLRS----HDQVSSIFWLLHSDLHEIKFTSVLEYLSSMVASVEPFNQAAFG 217 (288)
Q Consensus 146 ~~VvIDSLs~LL~~~----s~~~l~~~L~~L~~----~~~v~SVv~llH~DLh~p~~l~aL~~LAttvitv~p~~~~~~~ 217 (288)
.=|+|=||-..+... .+..+.+||+.||. +.....++..+++++-.++.+.-+++|++++|.|+|.+..
T Consensus 219 lRIvI~SLgSP~wy~~~~~~~~~ll~FL~~LRaLlR~~~~~~v~~iTlP~~l~~~~l~~rle~l~D~vi~L~pF~~~--- 295 (361)
T 4a8j_A 219 IRIVIPSLLHPAMYPPKMFESSEIIGLMHGVRSLVKKYYERVVLFASISIDIITPPLLVLLRNMFDSVINLEPFNQE--- 295 (361)
T ss_dssp EEEEETTTTCTTTSCGGGGBHHHHHHHHHHHHHHHHHTTTTEEEEEEEECTTSCHHHHHHHHHHCSEEEEEEECCHH---
T ss_pred EEEEecCCCCcccCCCcccCHHHHHHHHHHHHHHHhhcCCceEEEEEEChHHcChHHHHHHHHhCcEEEEeeecCCc---
Confidence 447788876665422 47789999999998 2333457788999999999999999999999999998653
Q ss_pred cccchhh-hhhhhhcc----cceeEEEEEec
Q 023062 218 QRVDLEN-LSMLEQNF----RKGKFHVRFKR 243 (288)
Q Consensus 218 ~~~~~~~-~~~~~~n~----~~~~~~Vr~kR 243 (288)
+.. ++..-+|+ ++|.++|+.--
T Consensus 296 ----~~~~~~~~yk~~p~~~~~GLl~V~KLP 322 (361)
T 4a8j_A 296 ----MTEFLERVYKSQPGKIQHGLVHILKLP 322 (361)
T ss_dssp ----HHHHHHHHTTTCGGGCCCEEEEEEECT
T ss_pred ----hhhhcccccccCcccccceEEEEEecc
Confidence 111 11122333 67888877643
No 17
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=93.14 E-value=0.24 Score=41.88 Aligned_cols=157 Identities=9% Similarity=0.039 Sum_probs=75.6
Q ss_pred cCcEEEEEecC--ChHHHHHHHHhcCCCcCCCCCeEEEEecccCCCCCcccccCccccccccccccccccccchhhHHHH
Q 023062 55 SRGLVVVAYSR--SPSFYVDLLKRRGIDIASSHDWIHILDCYTDPLGWKNWLIDKDISQEASSLSSFCQDVRNLDKLYSL 132 (288)
Q Consensus 55 ~~~V~vlafe~--spe~y~~~lk~~G~d~~~~~~~v~i~D~fsDPlgW~~~~~~~~~~~~~s~~~~~~~~v~~L~sl~~~ 132 (288)
..+++++..+. +++.+.+.+++.|++....-+++.+.+.++ . .++..++..
T Consensus 58 ~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~----~-----------------------~~~~~~~~~ 110 (243)
T 1n0w_A 58 EGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFN----T-----------------------DHQTQLLYQ 110 (243)
T ss_dssp SSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCS----H-----------------------HHHHHHHHH
T ss_pred CCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecCC----H-----------------------HHHHHHHHH
Confidence 56899999988 477777777777776421112344433211 0 011111111
Q ss_pred HHHhhcccCCCCcEEEEEechhHHHhhC-------ChH--HHHHHHHhhhcCC-c-eeEEEEEeeC--ccCC--------
Q 023062 133 IIEQGLIGQGKDRFSIAIDSVSEMVRHA-------SIS--SVAGILSNLRSHD-Q-VSSIFWLLHS--DLHE-------- 191 (288)
Q Consensus 133 i~~~~~~~~~~~~~~VvIDSLs~LL~~~-------s~~--~l~~~L~~L~~~~-~-v~SVv~llH~--DLh~-------- 191 (288)
+.+ .... ..+-+|+||+++.++... ... .+..++..|+... . =..|+.+-|. +...
T Consensus 111 ~~~--~~~~-~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~ 187 (243)
T 1n0w_A 111 ASA--MMVE-SRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADP 187 (243)
T ss_dssp HHH--HHHH-SCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC----------------
T ss_pred HHH--HHhc-CCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCc
Confidence 111 1111 246699999999987542 100 1444544444311 1 1335555553 2221
Q ss_pred --cchHhHHhhhceeEEEEeecCccccccccchhhhhhhhhcccceeEEEEEecCCCCeeeeEeEEEEEcCceE
Q 023062 192 --IKFTSVLEYLSSMVASVEPFNQAAFGQRVDLENLSMLEQNFRKGKFHVRFKRRNGRVRVMCEEILVELAGIK 263 (288)
Q Consensus 192 --p~~l~aL~~LAttvitv~p~~~~~~~~~~~~~~~~~~~~n~~~~~~~Vr~kRr~GRV~~~~E~f~i~~~~~~ 263 (288)
|.--.+++|+++.++.++.... ..-.+.|. |-|.+... . -.|.|...|+.
T Consensus 188 ~~~~g~~~~~~~~d~vi~l~~~~~-------------------~~r~l~v~-K~r~~~~~-~-~~f~I~~~Gi~ 239 (243)
T 1n0w_A 188 KKPIGGNIIAHASTTRLYLRKGRG-------------------ETRICKIY-DSPCLPEA-E-AMFAINADGVG 239 (243)
T ss_dssp ---------CCTTCEEEEEEECST-------------------TEEEEEEC-CBTTBSCE-E-EEEEEETTEEE
T ss_pred ccCCccChhhhcCcEEEEEEEcCC-------------------CeEEEEEE-ECCCCCCC-e-EEEEEeCCccc
Confidence 1112258999999999985311 11233332 33555432 2 57889887765
No 18
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=92.99 E-value=1.2 Score=42.81 Aligned_cols=222 Identities=10% Similarity=0.037 Sum_probs=107.6
Q ss_pred CCCCCeeEeecCCCCCchhhHHHHHHHHHHHHHHhhccccCcEEEEEecCChHHHHHHHHh--cCCCcCCCCCeEEEEec
Q 023062 16 GEHAPALTIKDSKASPFGFDVFNYVLTQLSNYILAGKSQSRGLVVVAYSRSPSFYVDLLKR--RGIDIASSHDWIHILDC 93 (288)
Q Consensus 16 ge~ap~l~i~dsl~~~~g~~~~~h~~~~l~s~i~a~~~q~~~V~vlafe~spe~y~~~lk~--~G~d~~~~~~~v~i~D~ 93 (288)
|=+++-+.+----...|=+.+..+++. .++ .+++.|.+|.+|-+++++..-+.. .|++. .++ .++
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~----~~a---~~g~~vl~fSlEms~~ql~~R~~~~~~~i~~----~~l--~~g 259 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAK----NMS---DNDDVVNLHSLEMGKKENIKRLIVTAGSINA----QKI--KAA 259 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHH----HHH---HTTCEEEEECSSSCTTHHHHHHHHHHSCCCH----HHH--HHT
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHH----HHH---HcCCEEEEEECCCCHHHHHHHHHHHHcCCCH----HHH--hcc
Confidence 445555554444444544555555533 222 236799999999999988875442 34442 111 112
Q ss_pred c--cCCCCCcccccCccccccccccccccc-cccchhhHHHHHHHhhcccCCCCcEEEEEechhHHHhh----CChHHHH
Q 023062 94 Y--TDPLGWKNWLIDKDISQEASSLSSFCQ-DVRNLDKLYSLIIEQGLIGQGKDRFSIAIDSVSEMVRH----ASISSVA 166 (288)
Q Consensus 94 f--sDPlgW~~~~~~~~~~~~~s~~~~~~~-~v~~L~sl~~~i~~~~~~~~~~~~~~VvIDSLs~LL~~----~s~~~l~ 166 (288)
. =++..|.+-..-.+.... ..+-+.. .--.++.+.+.+..+. ...+.++.+||||+|..|-.. .....+.
T Consensus 260 ~~~l~~~~~~~l~~a~~~l~~--~~l~i~d~~~~s~~~i~~~ir~l~-~~~~~~~~lIVID~Lq~~~~~~~~~~r~~~i~ 336 (444)
T 3bgw_A 260 RRDFASEDWGKLSMAIGEISN--SNINIFDKAGQSVNYIWSKTRQTK-RKNPGKRVIVMIDYLQLLEPAKANDSRTNQIS 336 (444)
T ss_dssp GGGTCCSCHHHHHHHHHHHHT--SCEEEECCSSCBHHHHHHHHHHHH-HHSCSSCEEEEEECSTTSBCSCSSSCHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHhc--CCEEEECCCCCCHHHHHHHHHHHH-HHhCCCCeEEEEecHHhccCCCCCCCHHHHHH
Confidence 1 123344321000000000 0010100 0012233333333321 112334459999999987432 1133556
Q ss_pred HHHHhhhcCCc-e-eEEEEEeeC--ccCC-----c-----chHhHHhhhceeEEEEeecCccccccccchhhhhhhhhcc
Q 023062 167 GILSNLRSHDQ-V-SSIFWLLHS--DLHE-----I-----KFTSVLEYLSSMVASVEPFNQAAFGQRVDLENLSMLEQNF 232 (288)
Q Consensus 167 ~~L~~L~~~~~-v-~SVv~llH~--DLh~-----p-----~~l~aL~~LAttvitv~p~~~~~~~~~~~~~~~~~~~~n~ 232 (288)
.+.+.|+.... . ..|+++-|. +... | ...+++++.|++++.++.... |.+. +.
T Consensus 337 ~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~krp~lsdlr~Sg~ieq~aD~Vi~L~r~~~---~~~~----------~~ 403 (444)
T 3bgw_A 337 QISRDLKKMARELDVVVIALSQLSRQVEQRQDKRPMLSDLRESGQLEQDADIIEFLYRDDY---YDKE----------SE 403 (444)
T ss_dssp HHHHHHHHHHHHHTCEEEEEEECCGGGGGSSCCCCCGGGCCSCSHHHHHCSEEEECCBGGG---TCTT----------CS
T ss_pred HHHHHHHHHHHHhCCeEEEEecCCccccccCCCCCchhhhhhhhhHHhhCCEEEEEecccc---cccc----------cc
Confidence 66666665211 1 246666662 2211 2 223589999999999984321 1110 01
Q ss_pred cceeEEE-EEecCCCCeeeeEeEEEEEcCceEEEeCC
Q 023062 233 RKGKFHV-RFKRRNGRVRVMCEEILVELAGIKFTPVL 268 (288)
Q Consensus 233 ~~~~~~V-r~kRr~GRV~~~~E~f~i~~~~~~f~~~~ 268 (288)
.++...+ ..|.|+|..- .-.+.+.+...+|...+
T Consensus 404 ~~~~~~l~i~K~R~G~~g--~v~l~f~~~~~rf~~~~ 438 (444)
T 3bgw_A 404 SKNIVEVIIAKHRDGPVG--TVSLAFIKEYGNFVNLE 438 (444)
T ss_dssp STTEEEEEEEEESSSCCE--EEEEEEETTTTEEECCC
T ss_pred CCCeEEEEEEcccCCCCe--EEEEEEEcCccEEecCC
Confidence 1233333 3355788754 33778888889998753
No 19
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=92.29 E-value=2.6 Score=40.18 Aligned_cols=157 Identities=12% Similarity=0.071 Sum_probs=81.3
Q ss_pred cCcEEEEEecCC--hHHHHHHHHhcCCCcCCCCCeEEEEecccCCCCCcccccCccccccccccccccccccchhhHHHH
Q 023062 55 SRGLVVVAYSRS--PSFYVDLLKRRGIDIASSHDWIHILDCYTDPLGWKNWLIDKDISQEASSLSSFCQDVRNLDKLYSL 132 (288)
Q Consensus 55 ~~~V~vlafe~s--pe~y~~~lk~~G~d~~~~~~~v~i~D~fsDPlgW~~~~~~~~~~~~~s~~~~~~~~v~~L~sl~~~ 132 (288)
+.++.++..+.+ ++...+..++.|++....-+++.+.+.+ +.... ...+...
T Consensus 212 ~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~----~~~~~-------------------~~~l~~~--- 265 (400)
T 3lda_A 212 EGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAY----NADHQ-------------------LRLLDAA--- 265 (400)
T ss_dssp SSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC----SHHHH-------------------HHHHHHH---
T ss_pred CCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccC----ChHHH-------------------HHHHHHH---
Confidence 457888988875 6667777777887753211244444321 10000 0001111
Q ss_pred HHHhhcccCCCCcEEEEEechhHHHhhCCh------------HHHHHHHHhhhcCCceeEEEEEeeC--ccCC-------
Q 023062 133 IIEQGLIGQGKDRFSIAIDSVSEMVRHASI------------SSVAGILSNLRSHDQVSSIFWLLHS--DLHE------- 191 (288)
Q Consensus 133 i~~~~~~~~~~~~~~VvIDSLs~LL~~~s~------------~~l~~~L~~L~~~~~v~SVv~llH~--DLh~------- 191 (288)
.+ .... ..+-+|+||++..++...-. ..+.+.|..|.+.. =..||.+-|. +.-+
T Consensus 266 -~~--~l~~-~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~-gitVIlv~Hv~~~~~g~~~~~g~ 340 (400)
T 3lda_A 266 -AQ--MMSE-SRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQF-GVAVVVTNQVVAQVDGGMAFNPD 340 (400)
T ss_dssp -HH--HHHH-SCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHH-CCEEEEEEEC-------------
T ss_pred -HH--HHHh-cCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHc-CCEEEEEEeecccCCccccccCC
Confidence 11 1111 24669999999998763211 23344444443211 1356667776 2211
Q ss_pred ---cchHhHHhhhceeEEEEeecCccccccccchhhhhhhhhcccceeEEEEEecCCCCeeeeEeEEEEEcCceEE
Q 023062 192 ---IKFTSVLEYLSSMVASVEPFNQAAFGQRVDLENLSMLEQNFRKGKFHVRFKRRNGRVRVMCEEILVELAGIKF 264 (288)
Q Consensus 192 ---p~~l~aL~~LAttvitv~p~~~~~~~~~~~~~~~~~~~~n~~~~~~~Vr~kRr~GRV~~~~E~f~i~~~~~~f 264 (288)
|---..++|.+++++.++-... .. +.-...|.|.+.... -.|.|...|++-
T Consensus 341 ~~~p~gg~~l~~~ad~vl~L~~~~g-------------------~~-R~l~v~K~R~~p~~e--~~F~It~~Gi~~ 394 (400)
T 3lda_A 341 PKKPIGGNIMAYSSTTRLGFKKGKG-------------------CQ-RLCKVVDSPCLPEAE--CVFAIYEDGVGD 394 (400)
T ss_dssp -------CHHHHHCSEEEEEEECST-------------------TE-EEEEEEECSSSCSCE--EEEEEETTEEEC
T ss_pred CccCCchhHHHHhcceEEEEEecCC-------------------Cc-EEEEEEcCCCCCCCc--eEEEEeCCcccc
Confidence 1122679999999999985321 12 333344556665443 689999888763
No 20
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=92.06 E-value=0.87 Score=52.18 Aligned_cols=118 Identities=12% Similarity=0.167 Sum_probs=68.2
Q ss_pred cccCcEEEEEecCChHHHHHHHHhcCCCcCCCCCeEEEEecccCCCCCcccccCccccccccccccccccccchhhHHHH
Q 023062 53 SQSRGLVVVAYSRSPSFYVDLLKRRGIDIASSHDWIHILDCYTDPLGWKNWLIDKDISQEASSLSSFCQDVRNLDKLYSL 132 (288)
Q Consensus 53 ~q~~~V~vlafe~spe~y~~~lk~~G~d~~~~~~~v~i~D~fsDPlgW~~~~~~~~~~~~~s~~~~~~~~v~~L~sl~~~ 132 (288)
.+++.++++.+|.+++..+ ++..|++. +++.+. +|.. . .++..++..
T Consensus 60 ~~Ge~vlYI~tEes~~~~r--a~~lG~dl----~~i~v~----~p~~-----~------------------e~ll~il~~ 106 (2050)
T 3cmu_A 60 REGKTCAFIDAEHALDPIY--ARKLGVDI----DNLLCS----QPDT-----G------------------EQALEICDA 106 (2050)
T ss_dssp TTTCCEEEECTTSCCCHHH--HHHTTCCT----TTCEEE----CCSS-----H------------------HHHHHHHHH
T ss_pred ccCCceEEEEccCcchhhH--HhhhccCc----ccceec----CCCc-----H------------------HHHHHHHHH
Confidence 3578999999999998887 56678874 345443 3410 1 111122111
Q ss_pred HHHhhcccCCCCcEEEEEechhHHHhhCCh-------------HHHHHHHHhhhc---CCceeEEEEEeeC---------
Q 023062 133 IIEQGLIGQGKDRFSIAIDSVSEMVRHASI-------------SSVAGILSNLRS---HDQVSSIFWLLHS--------- 187 (288)
Q Consensus 133 i~~~~~~~~~~~~~~VvIDSLs~LL~~~s~-------------~~l~~~L~~L~~---~~~v~SVv~llH~--------- 187 (288)
+. .. ..+-+||||||+.+.+.... ..+.+++..|.+ ... ..||.+-|.
T Consensus 107 L~-----~~-~~~~lVVIDSISaL~~~~e~~~e~~d~~~~~raR~l~~~l~~L~~~ak~~g-itVVlTNQv~~~~g~~fg 179 (2050)
T 3cmu_A 107 LA-----RS-GAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSN-TLLIFINQIRMKIGVMFG 179 (2050)
T ss_dssp HH-----HH-TCCSEEEESCGGGCCCHHHHHSCSSSCCTTHHHHHHHHHHHHHHHHHHTTT-CEEEEEECCEECTTCCSS
T ss_pred HH-----hc-cCCcEEEEcChHHhhhhcccccccccchhhHHHHHHHHHHHHHHHHHHHhC-CeEEEEEecccccccccC
Confidence 11 21 23458999999999764211 123445555554 122 223333332
Q ss_pred ccCCcchHhHHhhhceeEEEEee
Q 023062 188 DLHEIKFTSVLEYLSSMVASVEP 210 (288)
Q Consensus 188 DLh~p~~l~aL~~LAttvitv~p 210 (288)
+-+.|..-..++|+|+++|.++-
T Consensus 180 ~~~~~~gG~~l~~iaD~VI~L~r 202 (2050)
T 3cmu_A 180 NPETTTGGNALKFYASVRLDIRR 202 (2050)
T ss_dssp CCEECSSHHHHHHHEEEEEEEEE
T ss_pred cccccCCcchhhhhCcEEEEEEe
Confidence 23345567899999999999974
No 21
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=89.66 E-value=6.5 Score=36.33 Aligned_cols=97 Identities=11% Similarity=0.051 Sum_probs=50.2
Q ss_pred CCcEEEEEechhHHHhhCC-----h----HHHHHHHHhhhcC---CceeEEEEEeeCccCCcc----------hHhHHhh
Q 023062 143 KDRFSIAIDSVSEMVRHAS-----I----SSVAGILSNLRSH---DQVSSIFWLLHSDLHEIK----------FTSVLEY 200 (288)
Q Consensus 143 ~~~~~VvIDSLs~LL~~~s-----~----~~l~~~L~~L~~~---~~v~SVv~llH~DLh~p~----------~l~aL~~ 200 (288)
..+-+|+|||+..++.... . ..+.++++.|++. .. ..||.+-|. ...+. --..++|
T Consensus 230 ~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~-~tvii~~h~-~~~~~~~~~~~~~~~~G~~l~~ 307 (349)
T 1pzn_A 230 RPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYD-IAVFVTNQV-QARPDAFFGDPTRPIGGHILAH 307 (349)
T ss_dssp SCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTT-CEEEEEEEC-C---------------CCCCCT
T ss_pred CCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcC-cEEEEEccc-ccccccccCCccccCCcceEee
Confidence 4567999999999986421 1 1244555555441 12 234444442 22221 1235677
Q ss_pred hceeEEEEeecCccccccccchhhhhhhhhcccceeEEEEEecCCCCeeeeEeEEEEEcCceE
Q 023062 201 LSSMVASVEPFNQAAFGQRVDLENLSMLEQNFRKGKFHVRFKRRNGRVRVMCEEILVELAGIK 263 (288)
Q Consensus 201 LAttvitv~p~~~~~~~~~~~~~~~~~~~~n~~~~~~~Vr~kRr~GRV~~~~E~f~i~~~~~~ 263 (288)
.+++.+.++... +..++.+.+++..-....-.|.|...|+.
T Consensus 308 ~~~~rL~l~~~~----------------------~~~Ri~k~~ks~~~~~~~~~f~It~~Gi~ 348 (349)
T 1pzn_A 308 SATLRVYLRKGK----------------------GGKRIARLIDAPHLPEGEAVFSITEKGIE 348 (349)
T ss_dssp TCSEEEEEEECT----------------------TSEEEEEESCSSSSCCSEEEEEEETTEEE
T ss_pred cCcEEEEEEEcC----------------------CCeEEEEEEeCCCCCCeEEEEEEcCCCCC
Confidence 777888776421 12234444444332222357888888764
No 22
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=88.41 E-value=3.1 Score=39.12 Aligned_cols=119 Identities=12% Similarity=0.180 Sum_probs=65.5
Q ss_pred ccCcEEEEEecCChHHHHHHHHhcCCCcCCCCCeEEEEecccCCCCCcccccCccccccccccccccccccchhhHHHHH
Q 023062 54 QSRGLVVVAYSRSPSFYVDLLKRRGIDIASSHDWIHILDCYTDPLGWKNWLIDKDISQEASSLSSFCQDVRNLDKLYSLI 133 (288)
Q Consensus 54 q~~~V~vlafe~spe~y~~~lk~~G~d~~~~~~~v~i~D~fsDPlgW~~~~~~~~~~~~~s~~~~~~~~v~~L~sl~~~i 133 (288)
++..|.++.+|.+.+... +++.|++. +++.+.| |....+ -+..++.
T Consensus 101 ~g~~vlyi~~E~s~~~~~--a~~~g~d~----~~l~i~~----~~~~e~-------------------~l~~l~~----- 146 (366)
T 1xp8_A 101 AGGTCAFIDAEHALDPVY--ARALGVNT----DELLVSQ----PDNGEQ-------------------ALEIMEL----- 146 (366)
T ss_dssp TTCCEEEEESSCCCCHHH--HHHTTCCG----GGCEEEC----CSSHHH-------------------HHHHHHH-----
T ss_pred CCCeEEEEECCCChhHHH--HHHcCCCH----HHceeec----CCcHHH-------------------HHHHHHH-----
Confidence 467899999999887653 46668774 4565543 321100 0111111
Q ss_pred HHhhcccCCCCcEEEEEechhHHHhhCC-------------hHHHHHHHHhhhc---CCceeEEEEEeeC--cc------
Q 023062 134 IEQGLIGQGKDRFSIAIDSVSEMVRHAS-------------ISSVAGILSNLRS---HDQVSSIFWLLHS--DL------ 189 (288)
Q Consensus 134 ~~~~~~~~~~~~~~VvIDSLs~LL~~~s-------------~~~l~~~L~~L~~---~~~v~SVv~llH~--DL------ 189 (288)
+.... +.-+||||||..+..+.. ...+.++|+.|+. ... ..||.+-|. +.
T Consensus 147 ----l~~~~-~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~-~~VI~~nq~~~~~~~~fg~ 220 (366)
T 1xp8_A 147 ----LVRSG-AIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTG-TAAIFINQVREKIGVMYGN 220 (366)
T ss_dssp ----HHTTT-CCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTC-CEEEEEEEC----------
T ss_pred ----HHhcC-CCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcC-CEEEEEEecccccCcccCC
Confidence 12222 345899999999873211 1235677888754 111 223444332 22
Q ss_pred -CCcchHhHHhhhceeEEEEeecC
Q 023062 190 -HEIKFTSVLEYLSSMVASVEPFN 212 (288)
Q Consensus 190 -h~p~~l~aL~~LAttvitv~p~~ 212 (288)
..|.--.+++|.|++++.+.-..
T Consensus 221 p~~~~gg~al~~~a~~rl~L~r~~ 244 (366)
T 1xp8_A 221 PETTTGGRALKFYASVRLDVRKIG 244 (366)
T ss_dssp -----CHHHHHHHCSEEEEEEEES
T ss_pred ccccCCcchhhheeeEEEEEEecc
Confidence 12233567999999999998543
No 23
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=87.09 E-value=6.3 Score=38.25 Aligned_cols=104 Identities=17% Similarity=0.163 Sum_probs=60.7
Q ss_pred CcEEEEEechhHHHhhCC----hHHHHHHHHhhhcCCceeEEEEEeeCc-cCCc--chHhHHhhhceeEEEEeecCcccc
Q 023062 144 DRFSIAIDSVSEMVRHAS----ISSVAGILSNLRSHDQVSSIFWLLHSD-LHEI--KFTSVLEYLSSMVASVEPFNQAAF 216 (288)
Q Consensus 144 ~~~~VvIDSLs~LL~~~s----~~~l~~~L~~L~~~~~v~SVv~llH~D-Lh~p--~~l~aL~~LAttvitv~p~~~~~~ 216 (288)
+|-+++||+++.|-...+ -..+.++++.++.. . ..+|.+-|.. ..+. ++-..++|+++.++.+.-+...
T Consensus 371 ~p~llilDp~~~Ld~~~~~~~~~~~i~~ll~~l~~~-g-~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge~~-- 446 (525)
T 1tf7_A 371 KPARIAIDSLSALARGVSNNAFRQFVIGVTGYAKQE-E-ITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVEIR-- 446 (525)
T ss_dssp CCSEEEEECHHHHTSSSCHHHHHHHHHHHHHHHHHT-T-CEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEEET--
T ss_pred CCCEEEEcChHHHHhhCChHHHHHHHHHHHHHHHhC-C-CEEEEEECcccccCcccccCcccceeeeEEEEEEEEEeC--
Confidence 455899999988855432 23455566666643 2 3456666653 2221 1114578999999988743211
Q ss_pred ccccchhhhhhhhhcccceeEEEEEecCCCCeeeeEeEEEEEcCceEEEe
Q 023062 217 GQRVDLENLSMLEQNFRKGKFHVRFKRRNGRVRVMCEEILVELAGIKFTP 266 (288)
Q Consensus 217 ~~~~~~~~~~~~~~n~~~~~~~Vr~kRr~GRV~~~~E~f~i~~~~~~f~~ 266 (288)
+ ..-+.-...|.|.|......-.|.|...|+.+.+
T Consensus 447 --------------~-~~~R~l~v~K~R~~~~~~~~~~f~i~~~Gi~v~~ 481 (525)
T 1tf7_A 447 --------------G-EMSRAINVFKMRGSWHDKAIREFMISDKGPDIKD 481 (525)
T ss_dssp --------------T-EEEEEEEEEEESSSCCCCBCEEEEECSSCEEEEE
T ss_pred --------------C-EEEEEEEEEECCCCCCCCCEEEEEEcCCCEEEec
Confidence 0 1122222335566665557778999999988543
No 24
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=82.12 E-value=4.5 Score=45.68 Aligned_cols=119 Identities=12% Similarity=0.149 Sum_probs=65.5
Q ss_pred cccCcEEEEEecCChHHHHHHHHhcCCCcCCCCCeEEEEecccCCCCCcccccCccccccccccccccccccchhhHHHH
Q 023062 53 SQSRGLVVVAYSRSPSFYVDLLKRRGIDIASSHDWIHILDCYTDPLGWKNWLIDKDISQEASSLSSFCQDVRNLDKLYSL 132 (288)
Q Consensus 53 ~q~~~V~vlafe~spe~y~~~lk~~G~d~~~~~~~v~i~D~fsDPlgW~~~~~~~~~~~~~s~~~~~~~~v~~L~sl~~~ 132 (288)
.+++.++++.++.++++.. +++.|.+. +++.+.+ |. . ...+..++..
T Consensus 60 ~~G~~vlYI~te~~~~~l~--~~~lg~dl----~~i~i~~----p~----t-------------------~e~l~~ll~~ 106 (1706)
T 3cmw_A 60 REGKTCAFIDAEHALDPIY--ARKLGVDI----DNLLCSQ----PD----T-------------------GEQALEICDA 106 (1706)
T ss_dssp HTTCCEEEECTTSCCCHHH--HHHTTCCG----GGCEEEC----CS----S-------------------HHHHHHHHHH
T ss_pred hCCCceEEEEecCccHHHH--HHhhccCc----cceeeec----cC----c-------------------HHHHHHHHHH
Confidence 3477999999999988877 45667774 3455432 31 0 1112222222
Q ss_pred HHHhhcccCCCCcEEEEEechhHHHhhCCh-------------HHHHHHHHhhhcCCc-e-eEEEEEeeC---------c
Q 023062 133 IIEQGLIGQGKDRFSIAIDSVSEMVRHASI-------------SSVAGILSNLRSHDQ-V-SSIFWLLHS---------D 188 (288)
Q Consensus 133 i~~~~~~~~~~~~~~VvIDSLs~LL~~~s~-------------~~l~~~L~~L~~~~~-v-~SVv~llH~---------D 188 (288)
+. .. ..+-+||||||+.+...... ..+.+++..|..... . ..||.+-+. |
T Consensus 107 L~-----~~-~~~~LVVIDSLt~L~~~~e~e~~~~~~~~~~~~r~~~~ll~~L~~~ake~~~tVIvTNqv~s~~g~~fgd 180 (1706)
T 3cmw_A 107 LA-----RS-GAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGN 180 (1706)
T ss_dssp HH-----HH-TCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEEECTTCCSSC
T ss_pred HH-----hc-cCCCEEEEcchhhhccccccccccccchhHHHHHHHHHHHHHHHHHHHHcCCEEEEEeecccccccccCc
Confidence 22 11 23458999999998664311 124455555544100 1 113332221 2
Q ss_pred cCCcchHhHHhhhceeEEEEee
Q 023062 189 LHEIKFTSVLEYLSSMVASVEP 210 (288)
Q Consensus 189 Lh~p~~l~aL~~LAttvitv~p 210 (288)
-+.+..-..++|.|+++|.++-
T Consensus 181 ~~~a~~g~~l~h~ad~~I~L~r 202 (1706)
T 3cmw_A 181 PETTTGGNALKFYASVRLDIRR 202 (1706)
T ss_dssp CEEESSCSHHHHHEEEEEEEEE
T ss_pred cccccCcchhhhhCCEEEEEEe
Confidence 2234445799999999999974
No 25
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=80.62 E-value=7.7 Score=36.01 Aligned_cols=118 Identities=15% Similarity=0.160 Sum_probs=64.2
Q ss_pred ccCcEEEEEecCChHHHHHHHHhcCCCcCCCCCeEEEEecccCCCCCcccccCccccccccccccccccccchhhHHHHH
Q 023062 54 QSRGLVVVAYSRSPSFYVDLLKRRGIDIASSHDWIHILDCYTDPLGWKNWLIDKDISQEASSLSSFCQDVRNLDKLYSLI 133 (288)
Q Consensus 54 q~~~V~vlafe~spe~y~~~lk~~G~d~~~~~~~v~i~D~fsDPlgW~~~~~~~~~~~~~s~~~~~~~~v~~L~sl~~~i 133 (288)
++..+.++..|.+.+... .++.|++. +++.+.+ |..+. ++..+ +
T Consensus 88 ~g~~vlyi~~E~~~~~~~--a~~lG~~~----~~l~i~~----~~~~e-----------------------~~l~~---~ 131 (349)
T 2zr9_A 88 AGGIAAFIDAEHALDPEY--AKKLGVDT----DSLLVSQ----PDTGE-----------------------QALEI---A 131 (349)
T ss_dssp TTCCEEEEESSCCCCHHH--HHHTTCCG----GGCEEEC----CSSHH-----------------------HHHHH---H
T ss_pred CCCeEEEEECCCCcCHHH--HHHcCCCH----HHeEEec----CCCHH-----------------------HHHHH---H
Confidence 467899999998776542 45667774 3455443 22111 11111 1
Q ss_pred HHhhcccCCCCcEEEEEechhHHHhhC-------C----hH--HHHHHHHhhhcC---CceeEEEEEeeCc--cC-----
Q 023062 134 IEQGLIGQGKDRFSIAIDSVSEMVRHA-------S----IS--SVAGILSNLRSH---DQVSSIFWLLHSD--LH----- 190 (288)
Q Consensus 134 ~~~~~~~~~~~~~~VvIDSLs~LL~~~-------s----~~--~l~~~L~~L~~~---~~v~SVv~llH~D--Lh----- 190 (288)
.. +.... ++-+|||||+..++.+. + .+ .+.+.|+.|... .. ..||.+-|.- .-
T Consensus 132 ~~--l~~~~-~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~-~tVI~inh~~~~~~~~~~~ 207 (349)
T 2zr9_A 132 DM--LVRSG-ALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSG-TTAIFINELREKIGVMFGS 207 (349)
T ss_dssp HH--HHTTT-CCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHT-CEEEEEEECC---------
T ss_pred HH--HHhcC-CCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhC-CEEEEEeccccccCcccCC
Confidence 11 11222 34589999999997311 1 12 456777777531 11 2345555532 11
Q ss_pred --CcchHhHHhhhceeEEEEeec
Q 023062 191 --EIKFTSVLEYLSSMVASVEPF 211 (288)
Q Consensus 191 --~p~~l~aL~~LAttvitv~p~ 211 (288)
.|.--.+|+|.|++++.+.-.
T Consensus 208 p~~~~gg~~l~~~ad~~l~lrr~ 230 (349)
T 2zr9_A 208 PETTTGGKALKFYASVRLDVRRI 230 (349)
T ss_dssp --CCSSHHHHHHHCSEEEEEEEE
T ss_pred CcccCCchHhhhccceEEEEEEe
Confidence 122245799999999988754
No 26
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=79.39 E-value=3.6 Score=38.55 Aligned_cols=67 Identities=13% Similarity=0.223 Sum_probs=36.2
Q ss_pred cEEEEEechhHHHhhCC-----------h--HHHHHHHHhhhcCC-ce-eEEEEEeeC--ccC----Cc--ch-HhHHhh
Q 023062 145 RFSIAIDSVSEMVRHAS-----------I--SSVAGILSNLRSHD-QV-SSIFWLLHS--DLH----EI--KF-TSVLEY 200 (288)
Q Consensus 145 ~~~VvIDSLs~LL~~~s-----------~--~~l~~~L~~L~~~~-~v-~SVv~llH~--DLh----~p--~~-l~aL~~ 200 (288)
+-+|||||+..+..+.. . ..+.++|+.|.... .. ..||.+-|. ++. .| .. =.+|+|
T Consensus 142 ~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L~~~a~~~~~~VI~~nq~~~~~~~~fg~~~~~~gG~~l~~ 221 (356)
T 1u94_A 142 VDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKF 221 (356)
T ss_dssp CSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHHTCEEEEEEC--------------CTTCSHHHH
T ss_pred CCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccCCCcccCCCcceee
Confidence 44899999999863110 1 13567777776411 11 223433332 221 11 11 138999
Q ss_pred hceeEEEEeec
Q 023062 201 LSSMVASVEPF 211 (288)
Q Consensus 201 LAttvitv~p~ 211 (288)
.|++++.+.-.
T Consensus 222 ~advrl~l~r~ 232 (356)
T 1u94_A 222 YASVRLDIRRI 232 (356)
T ss_dssp HCSEEEEEEEE
T ss_pred eccEEEEEEEe
Confidence 99999988743
No 27
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=78.69 E-value=8 Score=33.97 Aligned_cols=113 Identities=13% Similarity=0.052 Sum_probs=55.4
Q ss_pred CcEEEEEechhHHHhh---CCh-HH---HHHHHHhhhcCCceeEEEEEeeCc-cCC--------------cchHhHHhhh
Q 023062 144 DRFSIAIDSVSEMVRH---ASI-SS---VAGILSNLRSHDQVSSIFWLLHSD-LHE--------------IKFTSVLEYL 201 (288)
Q Consensus 144 ~~~~VvIDSLs~LL~~---~s~-~~---l~~~L~~L~~~~~v~SVv~llH~D-Lh~--------------p~~l~aL~~L 201 (288)
+|-+|+||.+..++.. ... .. +.+.|+.|.+... ..|+.+-|.- ..+ -.-.+.++++
T Consensus 147 ~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~~~-~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~ 225 (296)
T 1cr0_A 147 GCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTG-VVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQL 225 (296)
T ss_dssp CCSEEEEEEEC-----------CHHHHHHHHHHHHHHHHHC-CEEEEEEECC-----------------CCC---CHHHH
T ss_pred CCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHHhC-CeEEEEEecCccccccccccCCCCCHHHhcccHHhHhh
Confidence 4559999999998743 122 33 4444555432111 3466666652 221 1122378999
Q ss_pred ceeEEEEeecCccccccccchhhhhhhhhcccceeEEEEEecCCCCeeeeEeEEEEEcCceEEEeCCCcchh
Q 023062 202 SSMVASVEPFNQAAFGQRVDLENLSMLEQNFRKGKFHVRFKRRNGRVRVMCEEILVELAGIKFTPVLSEDEI 273 (288)
Q Consensus 202 Attvitv~p~~~~~~~~~~~~~~~~~~~~n~~~~~~~Vr~kRr~GRV~~~~E~f~i~~~~~~f~~~~~~~~~ 273 (288)
|+.++.++.+... .+.+...+.|...|-+|..- ..-+|.++....+|.+++..+.+
T Consensus 226 aD~vi~L~~~~~~---------------~~~~~~~l~i~K~R~~g~~g-~~~~~~f~~~~~~f~~~~~~~~~ 281 (296)
T 1cr0_A 226 SDTIIALERNQQG---------------DMPNLVLVRILKCRFTGDTG-IAGYMEYNKETGWLEPSSYSGEE 281 (296)
T ss_dssp CSEEEEEEEC----------------------CEEEEEEEETTTCCCE-EEEEEEECTTTCCEEECCC----
T ss_pred CcEEEEEecCccc---------------CCCCeEEEEEEccccCCCCC-ceEEEEEEcCccEEecCCCCccc
Confidence 9999999854321 00122444444333378543 22367788888888888766554
No 28
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=75.88 E-value=7.4 Score=43.98 Aligned_cols=150 Identities=13% Similarity=0.126 Sum_probs=80.4
Q ss_pred CCCCCeeEeecCCCCCchhhHHHHHHHHHHHHHHhhccccCcEEEEEecCChHHHHHHHHhcCCCcCCCCCeEEEEeccc
Q 023062 16 GEHAPALTIKDSKASPFGFDVFNYVLTQLSNYILAGKSQSRGLVVVAYSRSPSFYVDLLKRRGIDIASSHDWIHILDCYT 95 (288)
Q Consensus 16 ge~ap~l~i~dsl~~~~g~~~~~h~~~~l~s~i~a~~~q~~~V~vlafe~spe~y~~~lk~~G~d~~~~~~~v~i~D~fs 95 (288)
|=+++.+++-=-=...+=+.+..|++... +.+++.+.++.+|-+++... .++.|+|. +++.+.+
T Consensus 379 Gl~~G~lilI~G~pGsGKTtLaLq~a~~~-------~~~G~~vlyis~E~s~~~~~--a~~lGvd~----~~L~i~~--- 442 (1706)
T 3cmw_A 379 GLPMGRIVEIYGPESSGKTTLTLQVIAAA-------QREGKTCAFIDAEHALDPIY--ARKLGVDI----DNLLCSQ--- 442 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHH-------HHTTCCEEEECTTSCCCHHH--HHHTTCCG----GGCEEEC---
T ss_pred CcCCCcEEEEEeCCCCCHHHHHHHHHHHH-------HHhCCCeEEEEccCchHHHH--HHHcCCCH----HHeEEcC---
Confidence 33444444433334444555556653322 23477999999999998764 67778874 4566543
Q ss_pred CCCCCcccccCccccccccccccccccccchhhHHHHHHHhhcccCCCCcEEEEEechhHHHhhC-------------Ch
Q 023062 96 DPLGWKNWLIDKDISQEASSLSSFCQDVRNLDKLYSLIIEQGLIGQGKDRFSIAIDSVSEMVRHA-------------SI 162 (288)
Q Consensus 96 DPlgW~~~~~~~~~~~~~s~~~~~~~~v~~L~sl~~~i~~~~~~~~~~~~~~VvIDSLs~LL~~~-------------s~ 162 (288)
|..+ .++... +.. +..+. ++-+||||||+.|.... ..
T Consensus 443 -~~~~-----------------------e~~l~~---l~~--lv~~~-~~~lVVIDSL~al~~~~e~e~~~g~~~~~~q~ 492 (1706)
T 3cmw_A 443 -PDTG-----------------------EQALEI---CDA--LARSG-AVDVIVVDSVAALTPKAEIEGEIGDSHMGLAA 492 (1706)
T ss_dssp -CSSH-----------------------HHHHHH---HHH--HHHHT-CCSEEEESCSTTCCCHHHHHSCTTCCCTTHHH
T ss_pred -CCCH-----------------------HHHHHH---HHH--HHHhc-CCCEEEECCHHHhhccccccccccccchhHHH
Confidence 2211 111111 111 11222 34589999999986310 11
Q ss_pred HHHHHHHHhhhcCC-ce-eEEEEE--eeCccC-------CcchHhHHhhhceeEEEEeec
Q 023062 163 SSVAGILSNLRSHD-QV-SSIFWL--LHSDLH-------EIKFTSVLEYLSSMVASVEPF 211 (288)
Q Consensus 163 ~~l~~~L~~L~~~~-~v-~SVv~l--lH~DLh-------~p~~l~aL~~LAttvitv~p~ 211 (288)
..+.+.|+.|+... .. ..||.+ ++.++. .|.--.+|+|.|++++.+.-.
T Consensus 493 r~~s~~Lr~L~~~ak~~~v~VI~inQl~~~vg~~fg~~~~p~gg~ale~~ADv~L~L~R~ 552 (1706)
T 3cmw_A 493 RMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRI 552 (1706)
T ss_dssp HHHHHHHHHHHHHHHHHTCEEEEEECEEECTTCCSSCCEEESSCSHHHHHEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEeecccccccccCCCccCCCCcceeeeCCEEEEEEec
Confidence 23567777775310 11 224444 333321 122237999999999998743
No 29
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=71.33 E-value=7 Score=44.94 Aligned_cols=118 Identities=12% Similarity=0.178 Sum_probs=67.6
Q ss_pred ccCcEEEEEecCChHHHHHHHHhcCCCcCCCCCeEEEEecccCCCCCcccccCccccccccccccccccccchhhHHHHH
Q 023062 54 QSRGLVVVAYSRSPSFYVDLLKRRGIDIASSHDWIHILDCYTDPLGWKNWLIDKDISQEASSLSSFCQDVRNLDKLYSLI 133 (288)
Q Consensus 54 q~~~V~vlafe~spe~y~~~lk~~G~d~~~~~~~v~i~D~fsDPlgW~~~~~~~~~~~~~s~~~~~~~~v~~L~sl~~~i 133 (288)
++..+.++.+|-+.+... .++.|++. +++.|.| |..+. ++.. .+
T Consensus 410 ~G~~vlyis~E~s~~~~~--a~~lGvd~----~~L~I~~----~~~~e-----------------------~il~---~~ 453 (2050)
T 3cmu_A 410 EGKTCAFIDAEHALDPIY--ARKLGVDI----DNLLCSQ----PDTGE-----------------------QALE---IC 453 (2050)
T ss_dssp TTCCEEEECTTSCCCHHH--HHHTTCCT----TTCEEEC----CSSHH-----------------------HHHH---HH
T ss_pred cCCeEEEEEcCCCHHHHH--HHHcCCCH----HHeEEeC----CCCHH-----------------------HHHH---HH
Confidence 456899999999988765 67778884 4566544 32221 1111 11
Q ss_pred HHhhcccCCCCcEEEEEechhHHHh-h----C--------ChHHHHHHHHhhhc---CCceeEEEEE--eeCccCC----
Q 023062 134 IEQGLIGQGKDRFSIAIDSVSEMVR-H----A--------SISSVAGILSNLRS---HDQVSSIFWL--LHSDLHE---- 191 (288)
Q Consensus 134 ~~~~~~~~~~~~~~VvIDSLs~LL~-~----~--------s~~~l~~~L~~L~~---~~~v~SVv~l--lH~DLh~---- 191 (288)
.. +..+. ++-+||||||..|.. . . ....+.+.|+.|.. ...+ .||.+ ++.++..
T Consensus 454 ~~--lv~~~-~~~lIVIDSL~al~~~~e~eg~~Gd~~~~~q~R~is~~Lr~L~~lake~~i-~VIlinQl~~~vg~~~g~ 529 (2050)
T 3cmu_A 454 DA--LARSG-AVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNT-LLIFINQIRMKIGVMFGN 529 (2050)
T ss_dssp HH--HHHHT-CCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTC-EEEEEECCEECTTCCSSC
T ss_pred HH--HHHhc-CCcEEEECCHHHhhcccccccccccchhhHHHHHHHHHHHHHHHHHHHcCC-eEEEEeecccccccccCC
Confidence 11 11222 345899999999863 1 1 11245677888853 2222 23444 3334321
Q ss_pred ---cchHhHHhhhceeEEEEeec
Q 023062 192 ---IKFTSVLEYLSSMVASVEPF 211 (288)
Q Consensus 192 ---p~~l~aL~~LAttvitv~p~ 211 (288)
|.--.+++|.|++++.+.-.
T Consensus 530 p~~psGg~ale~~ADv~l~L~R~ 552 (2050)
T 3cmu_A 530 PETTTGGNALKFYASVRLDIRRI 552 (2050)
T ss_dssp CEECSSHHHHHHHEEEEEEEEEE
T ss_pred CcCCCCcchhhhhCCEEEEEEec
Confidence 22234899999999998743
No 30
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=70.00 E-value=21 Score=29.22 Aligned_cols=96 Identities=10% Similarity=0.020 Sum_probs=49.0
Q ss_pred CCCcEEEEEechhHHHhhCC------------hHHHHHHHHhhhcCCceeEEEEEeeCccCCcchHhHHhhhceeEEEEe
Q 023062 142 GKDRFSIAIDSVSEMVRHAS------------ISSVAGILSNLRSHDQVSSIFWLLHSDLHEIKFTSVLEYLSSMVASVE 209 (288)
Q Consensus 142 ~~~~~~VvIDSLs~LL~~~s------------~~~l~~~L~~L~~~~~v~SVv~llH~DLh~p~~l~aL~~LAttvitv~ 209 (288)
...|-+|++|++..++...- ...+...|..+.+... ..||.+-|. ..+ --..++++++.++.++
T Consensus 123 ~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g-~tvi~vtH~-~~~--~g~~~~~~~d~~l~l~ 198 (231)
T 4a74_A 123 DRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYD-IAVFVTNQV-QAN--GGHILAHSATLRVYLR 198 (231)
T ss_dssp SSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHT-CEEEEEEEC-C-----------CCSEEEEEE
T ss_pred CCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCC-CeEEEEeec-ccC--cchhhHhhceEEEEEE
Confidence 44677999999999876411 1144555555443212 345555552 221 2356889999999998
Q ss_pred ecCccccccccchhhhhhhhhcccceeEEEEEecCCCCeeeeEeEEEEEcCceE
Q 023062 210 PFNQAAFGQRVDLENLSMLEQNFRKGKFHVRFKRRNGRVRVMCEEILVELAGIK 263 (288)
Q Consensus 210 p~~~~~~~~~~~~~~~~~~~~n~~~~~~~Vr~kRr~GRV~~~~E~f~i~~~~~~ 263 (288)
.+.. ....+.+. |-|.|..-. . .|.|..+|+.
T Consensus 199 ~~~~-------------------~~r~l~~~-K~r~~~~~~-~-~f~i~~~Gl~ 230 (231)
T 4a74_A 199 KGKG-------------------GKRIARLI-DAPHLPEGE-A-VFSITEKGIE 230 (231)
T ss_dssp ECTT-------------------SCEEEEEE-SCC--CCSC-E-EEEEETTEEE
T ss_pred ecCC-------------------CeEEEEEE-eCCCCCCce-E-EEEEeccccc
Confidence 5322 22333332 334443333 3 8999888764
No 31
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=63.35 E-value=78 Score=30.44 Aligned_cols=133 Identities=18% Similarity=0.163 Sum_probs=68.7
Q ss_pred cCcEEEEEecCChHHHHHHHHhcCCCcCCCC--CeEEEEecccCCCCCcccccCccccccccccccccccccchhhHHHH
Q 023062 55 SRGLVVVAYSRSPSFYVDLLKRRGIDIASSH--DWIHILDCYTDPLGWKNWLIDKDISQEASSLSSFCQDVRNLDKLYSL 132 (288)
Q Consensus 55 ~~~V~vlafe~spe~y~~~lk~~G~d~~~~~--~~v~i~D~fsDPlgW~~~~~~~~~~~~~s~~~~~~~~v~~L~sl~~~ 132 (288)
+++.+++.++.++..+.+..++.|+...... .++.+++.+.++..| .+...+ .+..+...
T Consensus 68 ~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~~l~~~~~~~~~~~~-----------------~~l~~~-~l~~~~~~ 129 (525)
T 1tf7_A 68 DEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGKLFILDASPDPEGQ-----------------EVVGGF-DLSALIER 129 (525)
T ss_dssp CCCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTTSEEEEECCCCSSCC-----------------SCCSSH-HHHHHHHH
T ss_pred CCCEEEEEEeCCHHHHHHHHHHcCCChHHhhccCcEEEEecCcccchh-----------------hhhccc-CHHHHHHH
Confidence 4677788888788777777777777643211 236665544321111 000111 12222111
Q ss_pred HHHhhcccCCCCcEEEEEechhHHHhhC-----ChHHHHHHHHhhhcCCceeEEEEEeeCccCC-cchHh-HHhhhceeE
Q 023062 133 IIEQGLIGQGKDRFSIAIDSVSEMVRHA-----SISSVAGILSNLRSHDQVSSIFWLLHSDLHE-IKFTS-VLEYLSSMV 205 (288)
Q Consensus 133 i~~~~~~~~~~~~~~VvIDSLs~LL~~~-----s~~~l~~~L~~L~~~~~v~SVv~llH~DLh~-p~~l~-aL~~LAttv 205 (288)
+... +.+ + .+-.|+||+...++... ....+.++++.|+.. .+ ++|.+-|.--.. +.... .++++|+.+
T Consensus 130 ~~~~-LS~-g-~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~-g~-tvl~itH~~~~~~~~~~~~i~~~laD~v 204 (525)
T 1tf7_A 130 INYA-IQK-Y-RARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQI-GA-TTVMTTERIEEYGPIARYGVEEFVSDNV 204 (525)
T ss_dssp HHHH-HHH-H-TCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHH-TC-EEEEEEECSSSSSCSSTTSCHHHHCSEE
T ss_pred HHHH-HHH-c-CCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHC-CC-EEEEEecCCCCccccccccceeeeeeEE
Confidence 1100 111 1 23378999998875432 224567777777652 33 455555643221 22222 257899999
Q ss_pred EEEee
Q 023062 206 ASVEP 210 (288)
Q Consensus 206 itv~p 210 (288)
+.+.-
T Consensus 205 i~L~~ 209 (525)
T 1tf7_A 205 VILRN 209 (525)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99974
No 32
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=53.37 E-value=33 Score=32.14 Aligned_cols=66 Identities=14% Similarity=0.168 Sum_probs=37.8
Q ss_pred cEEEEEechhHHHh--hC-----------ChHHHHHHHHhhhc---CCceeEEEEEeeC--cc-------CCcchHhHHh
Q 023062 145 RFSIAIDSVSEMVR--HA-----------SISSVAGILSNLRS---HDQVSSIFWLLHS--DL-------HEIKFTSVLE 199 (288)
Q Consensus 145 ~~~VvIDSLs~LL~--~~-----------s~~~l~~~L~~L~~---~~~v~SVv~llH~--DL-------h~p~~l~aL~ 199 (288)
+-+|+|||+..+.. .. ....+.++|+.|+. ... ..||.+=|. +. ..+---.+|+
T Consensus 140 ~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak~~~-~tVI~inqv~~k~g~~fg~p~~~~GG~~l~ 218 (356)
T 3hr8_A 140 VDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNKSK-AVVIFTNQIRMKIGVMFGSPETTTGGLALK 218 (356)
T ss_dssp CSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHTSS-CEEEEEEESSSCSSSSSCSCSSCTHHHHHH
T ss_pred CCeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhcC-CEEEEEeeeeeccccccCCcccCCCcchhh
Confidence 34899999988753 11 12345556655554 222 234444443 11 1122356799
Q ss_pred hhceeEEEEeec
Q 023062 200 YLSSMVASVEPF 211 (288)
Q Consensus 200 ~LAttvitv~p~ 211 (288)
|.+++++.++-.
T Consensus 219 h~~~~rl~l~k~ 230 (356)
T 3hr8_A 219 FYATMRMEVRRG 230 (356)
T ss_dssp HHCSEEEEEEEE
T ss_pred hhCcEEEEEEec
Confidence 999999999853
No 33
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=50.30 E-value=1.2e+02 Score=26.20 Aligned_cols=25 Identities=12% Similarity=0.158 Sum_probs=18.5
Q ss_pred CcEEEEEecCChHHHHHHHHhcCCC
Q 023062 56 RGLVVVAYSRSPSFYVDLLKRRGID 80 (288)
Q Consensus 56 ~~V~vlafe~spe~y~~~lk~~G~d 80 (288)
+.+.++.+|-+++.+..-++..|.+
T Consensus 69 ~~v~~~~~e~~~~~~~~r~~~~g~~ 93 (279)
T 1nlf_A 69 GPVIYLPAEDPPTAIHHRLHALGAH 93 (279)
T ss_dssp CCEEEEESSSCHHHHHHHHHHHHTT
T ss_pred ccEEEEECCCCHHHHHHHHHHHHhh
Confidence 5788999999998776656555544
No 34
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=41.91 E-value=59 Score=30.57 Aligned_cols=54 Identities=9% Similarity=0.019 Sum_probs=29.2
Q ss_pred CeeEeecCCCCCchhhHHHHHHHHHHHHHHhhccccCcEEEEEecCChHHHHHHHHhcCCCc
Q 023062 20 PALTIKDSKASPFGFDVFNYVLTQLSNYILAGKSQSRGLVVVAYSRSPSFYVDLLKRRGIDI 81 (288)
Q Consensus 20 p~l~i~dsl~~~~g~~~~~h~~~~l~s~i~a~~~q~~~V~vlafe~spe~y~~~lk~~G~d~ 81 (288)
+.+.|... ...+=+.+..|++..... . -.++.+.++..|-+.+.. -.++.|+|.
T Consensus 29 GiteI~G~-pGsGKTtL~Lq~~~~~~~---~--g~g~~vlyId~E~s~~~~--ra~~lGvd~ 82 (333)
T 3io5_A 29 GLLILAGP-SKSFKSNFGLTMVSSYMR---Q--YPDAVCLFYDSEFGITPA--YLRSMGVDP 82 (333)
T ss_dssp EEEEEEES-SSSSHHHHHHHHHHHHHH---H--CTTCEEEEEESSCCCCHH--HHHHTTCCG
T ss_pred CeEEEECC-CCCCHHHHHHHHHHHHHh---c--CCCceEEEEeccchhhHH--HHHHhCCCH
Confidence 33444443 444455666666432221 1 015678888888776432 356678884
Done!