Query 023063
Match_columns 288
No_of_seqs 183 out of 1890
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 15:44:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023063.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023063hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4aps_A DI-OR tripeptide H+ sym 99.9 3E-20 1E-24 173.2 19.6 184 18-228 9-198 (491)
2 2xut_A Proton/peptide symporte 99.8 1.8E-19 6E-24 169.5 17.7 187 20-230 10-202 (524)
3 3o7q_A L-fucose-proton symport 99.8 1.4E-18 4.8E-23 159.2 21.3 180 19-225 23-228 (438)
4 1pw4_A Glycerol-3-phosphate tr 99.8 2.6E-18 9.1E-23 157.7 14.7 177 21-228 27-208 (451)
5 2gfp_A EMRD, multidrug resista 99.7 2.9E-17 9.9E-22 147.8 11.8 166 26-221 4-169 (375)
6 1pw4_A Glycerol-3-phosphate tr 99.6 2E-14 7E-19 131.7 16.4 179 22-226 252-433 (451)
7 4gc0_A D-xylose-proton symport 99.6 5E-15 1.7E-19 137.7 12.4 133 57-200 54-186 (491)
8 3o7q_A L-fucose-proton symport 99.6 7.2E-14 2.5E-18 127.7 17.9 167 21-219 257-425 (438)
9 2cfq_A Lactose permease; trans 99.5 1.7E-13 6E-18 125.4 12.6 174 23-225 221-398 (417)
10 4aps_A DI-OR tripeptide H+ sym 99.4 3.3E-12 1.1E-16 118.6 12.4 185 23-228 284-473 (491)
11 4gc0_A D-xylose-proton symport 99.4 2.5E-11 8.4E-16 112.6 18.0 183 23-229 277-465 (491)
12 2cfq_A Lactose permease; trans 99.4 3.4E-14 1.2E-18 130.1 -1.7 170 22-216 7-177 (417)
13 2gfp_A EMRD, multidrug resista 99.1 1.9E-11 6.7E-16 109.5 1.8 164 22-213 199-363 (375)
14 2xut_A Proton/peptide symporte 98.4 5.1E-08 1.7E-12 91.1 2.2 64 133-202 404-467 (524)
No 1
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.85 E-value=3e-20 Score=173.16 Aligned_cols=184 Identities=21% Similarity=0.397 Sum_probs=162.1
Q ss_pred cCCcchHHHHHHHHHHHHHhHHhhhhhHHHHhHHh-----cCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHh-ccchhHH
Q 023063 18 KGGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQ-----LHMPLTKAANTLTNFGGTGSLTPLIGAFVADA-YAGRFWT 91 (288)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-----~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr-~~Grr~~ 91 (288)
+++++.++.+.+..++.++++|++..+++.|++++ +|++..+.+++.+.+.++..++.+++|+++|| + |||++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~-g~r~~ 87 (491)
T 4aps_A 9 FGQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRII-GARPA 87 (491)
T ss_dssp --CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-CHHHH
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cchHH
Confidence 44567888888999999999999999999999988 99999999999999999999999999999999 7 99999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhh
Q 023063 92 ITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQA 171 (288)
Q Consensus 92 i~~~~~l~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~ 171 (288)
+..+.++..++.+++.++. +.+.+++++++.|+|.+...+...++++|.+|++++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~--- 142 (491)
T 4aps_A 88 VFWGGVLIMLGHIVLALPF----------------------GASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDR--- 142 (491)
T ss_dssp HHHHHHHHHHHHHHHHSCC----------------------STTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTT---
T ss_pred HHHHHHHHHHHHHHHHHhh----------------------hHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccc---
Confidence 9999999999988887654 567788899999999999999999999999998732
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhHhheeeccchhhhhhHhHHHHHHHHHHHHHhcc
Q 023063 172 TKTWKYFNWYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYP 228 (288)
Q Consensus 172 ~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~~~~~~~~~~~i~~~~~~~ 228 (288)
+|+..+++++.+.++|..++|.+++++.+..||+..|++.++..+++++.+....+
T Consensus 143 -~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~ 198 (491)
T 4aps_A 143 -RRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGK 198 (491)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -cceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 47888999999999999999999999999899999999987777666665554443
No 2
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.82 E-value=1.8e-19 Score=169.46 Aligned_cols=187 Identities=31% Similarity=0.548 Sum_probs=155.0
Q ss_pred CcchHHHHHHHHHHHHHhHHhhhhhHHHHhHHhcC------CCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHH
Q 023063 20 GMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLH------MPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTIT 93 (288)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~------~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~ 93 (288)
+++.++.+.+..++.++++|++..+++.|+++++| ++..+.+++.+.+.++..++.+++|+++||++|||+++.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~ 89 (524)
T 2xut_A 10 WPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTIL 89 (524)
T ss_dssp ---CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 34556667788999999999999999999999999 999999999999999999999999999999659999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhh
Q 023063 94 IASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATK 173 (288)
Q Consensus 94 ~~~~l~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 173 (288)
++.++..++.+++.++. .+.+.+++++++.|++.+...+...++++|.+|++++. +
T Consensus 90 ~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~---~ 145 (524)
T 2xut_A 90 WLSLIYCVGHAFLAIFE---------------------HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKS---L 145 (524)
T ss_dssp HHHHHHHHHHHHHHHTS---------------------SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTT---H
T ss_pred HHHHHHHHHHHHHHHhc---------------------ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchH---H
Confidence 99999988888776543 14667888899999999999999999999999987310 1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhHhheeeccchhhhhhHhHHHHHHHHHHHHHhccce
Q 023063 174 TWKYFNWYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYPLY 230 (288)
Q Consensus 174 ~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~~~~~~~~~~~i~~~~~~~~~ 230 (288)
+...+++++.+.++|..++|.+++++.+..||+..|++.+++.+++.+.+....++.
T Consensus 146 ~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~ 202 (524)
T 2xut_A 146 AQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRY 202 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 244556689999999999999999998888999999988877666665555444443
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.82 E-value=1.4e-18 Score=159.16 Aligned_cols=180 Identities=13% Similarity=0.044 Sum_probs=144.6
Q ss_pred CCcchHHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHH
Q 023063 19 GGMITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASII 98 (288)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l 98 (288)
++++.+..+....+...+........+ .++.+++|++..+.+++.+.+.++..++.++.|+++||+ |||++++++.++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~~ 100 (438)
T 3o7q_A 23 SYIIPFALLCSLFFLWAVANNLNDILL-PQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLFL 100 (438)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHS-CHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchHHHHHHHHH
Confidence 344455555555555666555544444 456778999999999999999999999999999999998 999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHH
Q 023063 99 YQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYF 178 (288)
Q Consensus 99 ~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (288)
..++.+++..... ..+.+.+++++++.|++.+...+...++++|.+|++ +|++..
T Consensus 101 ~~~~~~~~~~~~~-------------------~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~------~r~~~~ 155 (438)
T 3o7q_A 101 YALGAALFWPAAE-------------------IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPES------SGHFRL 155 (438)
T ss_dssp HHHHHHHHHHHHH-------------------TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCST------THHHHH
T ss_pred HHHHHHHHHhccc-------------------cccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCch------hHHHHH
Confidence 9999988843220 116788899999999999999999999999999988 699999
Q ss_pred HHHHHHHHHHHHHHHHhHhhee-eccc-------------------------hhhhhhHhHHHHHHHHHHHHH
Q 023063 179 NWYYFVMGAAILVAVTVLVYIQ-DNIG-------------------------WGWGLGIPTFAMFLSIIAFLI 225 (288)
Q Consensus 179 ~~~~~~~~~g~~i~~~~~~~l~-~~~g-------------------------~~~~f~~~~~~~~~~~i~~~~ 225 (288)
++.+.+.++|..++|.+++++. +..+ |++.|++.++...+..+.++.
T Consensus 156 ~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 228 (438)
T 3o7q_A 156 NLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIML 228 (438)
T ss_dssp HHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999887 5544 888887766655554444433
No 4
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.77 E-value=2.6e-18 Score=157.74 Aligned_cols=177 Identities=13% Similarity=0.066 Sum_probs=147.7
Q ss_pred cchHHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHH
Q 023063 21 MITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQ 100 (288)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~ 100 (288)
++.++.+.+..++..+..+.+...++.+ .+++ .+..+.+++.+.+.++..++.+++|+++||+ |||++++++.++..
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~ 103 (451)
T 1pw4_A 27 WQIFLGIFFGYAAYYLVRKNFALAMPYL-VEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAA 103 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHHT-TSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhc-CchHHHHHHHHHHH
Confidence 4445555556666666655555555544 4567 9999999999999999999999999999998 99999999999999
Q ss_pred HHHHHHHH----HhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhh
Q 023063 101 IGMICLTI----SAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWK 176 (288)
Q Consensus 101 i~~~~~~~----~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (288)
++.+++.+ +. +.+.+++++++.|++.+...+...++++|.+|++ +|++
T Consensus 104 ~~~~~~~~~~~~~~----------------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~------~r~~ 155 (451)
T 1pw4_A 104 AVMLFMGFVPWATS----------------------SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQK------ERGG 155 (451)
T ss_dssp HHHHHHHHCHHHHS----------------------SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTT------HHHH
T ss_pred HHHHHHHhhhhccc----------------------cHHHHHHHHHHHHHHhhhccchHHHHHHHHCCch------hhhH
Confidence 99998887 54 5667888899999999999999999999999987 7999
Q ss_pred HHHHHHHHHHHHHHHHHHhHhheeeccc-hhhhhhHhHHHHHHHHHHHHHhcc
Q 023063 177 YFNWYYFVMGAAILVAVTVLVYIQDNIG-WGWGLGIPTFAMFLSIIAFLIGYP 228 (288)
Q Consensus 177 ~~~~~~~~~~~g~~i~~~~~~~l~~~~g-~~~~f~~~~~~~~~~~i~~~~~~~ 228 (288)
.+++.+.+.++|..++|.+++++.+..| |+..|++.+++.++..+..+...+
T Consensus 156 ~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~ 208 (451)
T 1pw4_A 156 IVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMR 208 (451)
T ss_dssp HHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999998888888 999999888777665555444433
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.72 E-value=2.9e-17 Score=147.76 Aligned_cols=166 Identities=10% Similarity=0.079 Sum_probs=143.0
Q ss_pred HHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHHHHHH
Q 023063 26 FIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMIC 105 (288)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i~~~~ 105 (288)
.+....++..+......+.++.+ .+++|.++.+.+++.+...+...++.++.|+++||+ |||+++..+..+..++.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~ 81 (375)
T 2gfp_A 4 MLVLLVAVGQMAQTIYIPAIADM-ARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRV-GRRPVILVGMSIFMLATLV 81 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTS-CCCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHHHH
Confidence 34445555666666555656554 567999999999999999999999999999999998 9999999999999999988
Q ss_pred HHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHH
Q 023063 106 LTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVM 185 (288)
Q Consensus 106 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (288)
..... +.+.+++.+++.|++.+...+...+++.|.+|++ +|++.++..+...
T Consensus 82 ~~~~~----------------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~ 133 (375)
T 2gfp_A 82 AVTTS----------------------SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERT------QLRHANSLLNMGI 133 (375)
T ss_dssp HHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS------SCCSHHHHHHHHH
T ss_pred HHHhc----------------------cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHH------HHHHHHHHHHHHH
Confidence 88776 7788889999999999999999999999999987 6999999999999
Q ss_pred HHHHHHHHHhHhheeeccchhhhhhHhHHHHHHHHH
Q 023063 186 GAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSII 221 (288)
Q Consensus 186 ~~g~~i~~~~~~~l~~~~g~~~~f~~~~~~~~~~~i 221 (288)
++|..++|.+++++.+..||+..|++.++..++..+
T Consensus 134 ~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 169 (375)
T 2gfp_A 134 LVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTF 169 (375)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 999999999999999888999998877766555444
No 6
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.60 E-value=2e-14 Score=131.71 Aligned_cols=179 Identities=14% Similarity=0.122 Sum_probs=145.9
Q ss_pred chHHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhcc-chhHHHHHHHHHHH
Q 023063 22 ITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYA-GRFWTITIASIIYQ 100 (288)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~-Grr~~i~~~~~l~~ 100 (288)
+.++.+.+..++....++++..+++.|+++.+|++..+++.+.....++..++.++.|+++||+. |||+.+..+..+..
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~ 331 (451)
T 1pw4_A 252 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLV 331 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 56777777888888888999999999999889999999999999999999999999999999942 78888877766555
Q ss_pred -HHHHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHH
Q 023063 101 -IGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFN 179 (288)
Q Consensus 101 -i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (288)
++.+++.... +.+.+...+..++.|++.+...+...+++.|.+|++ .|++..+
T Consensus 332 ~~~~~~~~~~~--------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~g~~~~ 385 (451)
T 1pw4_A 332 TIATIVYWMNP--------------------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKK------AAGTAAG 385 (451)
T ss_dssp HHHHHHTTSCC--------------------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTT------HHHHHHH
T ss_pred HHHHHHHHHhc--------------------ccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchh------hhhhHHH
Confidence 4443333211 114555666677888888888888889999999987 6999999
Q ss_pred HHHHHHHH-HHHHHHHhHhheeeccchhhhhhHhHHHHHHHHHHHHHh
Q 023063 180 WYYFVMGA-AILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIG 226 (288)
Q Consensus 180 ~~~~~~~~-g~~i~~~~~~~l~~~~g~~~~f~~~~~~~~~~~i~~~~~ 226 (288)
..+...++ |..++|.+.+++.+..||+..|++.+++.+++.+.....
T Consensus 386 ~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 386 FTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999 999999999999999999999988887777766655543
No 7
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.60 E-value=5e-15 Score=137.67 Aligned_cols=133 Identities=13% Similarity=0.088 Sum_probs=104.3
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcccccccccchHHH
Q 023063 57 LTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAI 136 (288)
Q Consensus 57 ~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 136 (288)
..+.+++.+.+.++..++++++|+++||+ |||++++++.+++.++.++++.+........... ... ..-..+.+.
T Consensus 54 ~~~~g~~~s~~~~G~~iG~~~~G~laDr~-GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~--~~~--~~~a~~~~~ 128 (491)
T 4gc0_A 54 NSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISGVGSAWPELGFTSINPDN--TVP--VYLAGYVPE 128 (491)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSS--SCC--GGGGGCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchh--HHH--HHHhhhHHH
Confidence 34567888889999999999999999998 9999999999999999998885331100000000 000 000126788
Q ss_pred HHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhHhhee
Q 023063 137 LYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQ 200 (288)
Q Consensus 137 ~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~l~ 200 (288)
++++|++.|+|.|+..+..+++++|..|++ +|++..+..+.+..+|..+++.++..+.
T Consensus 129 l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~------~rg~~~~~~~~~~~~g~~~~~~~~~~~~ 186 (491)
T 4gc0_A 129 FVIYRIIGGIGVGLASMLSPMYIAELAPAH------IRGKLVSFNQFAIIFGQLLVYCVNYFIA 186 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSCGG------GHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCHH------hhhhhHHhhhhhhhhhhhhhhhcchhhc
Confidence 999999999999999999999999999988 7999999999999999999888776544
No 8
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.58 E-value=7.2e-14 Score=127.68 Aligned_cols=167 Identities=13% Similarity=0.084 Sum_probs=133.6
Q ss_pred cchHHHHHHHHHHHHHhHHhhhhhHHHH-hHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHH
Q 023063 21 MITMPFIFSNEVCEKLAVVGFNTNMISY-LTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIY 99 (288)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~l~~y-l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~ 99 (288)
.+.++...+..++.....+.+..+++.| +++.+|++..+++.......++..++.+++|+++||+ |||+.+..+.++.
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~ 335 (438)
T 3o7q_A 257 IRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIA 335 (438)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHH
Confidence 3566666677777777888888999999 8888899999999999999999999999999999998 9999999998888
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHH
Q 023063 100 QIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFN 179 (288)
Q Consensus 100 ~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (288)
.++.++..... +.+. .+..++.+++.+...+...++..|.+|++ ++...+
T Consensus 336 ~~~~~~~~~~~----------------------~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~~~~~ 385 (438)
T 3o7q_A 336 MALCLISAFAG----------------------GHVG-LIALTLCSAFMSIQYPTIFSLGIKNLGQD-------TKYGSS 385 (438)
T ss_dssp HHHHHHHHHCC----------------------HHHH-HHHHHHHHHHHTTHHHHHHHHHHSSCGGG-------HHHHHH
T ss_pred HHHHHHHHHcC----------------------CcHH-HHHHHHHHHHHHHHHHHHHHHHHhhcccc-------ccchhh
Confidence 87776666543 3332 33446778888888999999989998864 555555
Q ss_pred HHHHHHHHHHHHHHHhHhheeeccc-hhhhhhHhHHHHHHH
Q 023063 180 WYYFVMGAAILVAVTVLVYIQDNIG-WGWGLGIPTFAMFLS 219 (288)
Q Consensus 180 ~~~~~~~~g~~i~~~~~~~l~~~~g-~~~~f~~~~~~~~~~ 219 (288)
+.. ...+|+.++|.+.|++.+..| ++..|.+.+++.++.
T Consensus 386 ~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~ 425 (438)
T 3o7q_A 386 FIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVI 425 (438)
T ss_dssp HHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 544 566999999999999999888 998888765544433
No 9
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.49 E-value=1.7e-13 Score=125.40 Aligned_cols=174 Identities=9% Similarity=0.049 Sum_probs=122.8
Q ss_pred hHHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCC---CHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHH
Q 023063 23 TMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHM---PLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIY 99 (288)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~---~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~ 99 (288)
..+......++....++....+++.|+.+.++. +....+....+..++..++.++.|+++||+ |||+.+..+..+.
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~l~~~~~~~ 299 (417)
T 2cfq_A 221 KLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIM 299 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cHHHHHHHHHHHH
Confidence 344444343444445555556788888766553 234456666666677788899999999998 9999998888777
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHH
Q 023063 100 QIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFN 179 (288)
Q Consensus 100 ~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (288)
.++.++..+.. +.+.+.+...+.+++.+...+...++++|.+|++ .|++..+
T Consensus 300 ~~~~~~~~~~~----------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~------~~g~~~g 351 (417)
T 2cfq_A 300 SVRIIGSSFAT----------------------SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVR------FSATIYL 351 (417)
T ss_dssp HHHHHHHTTCC----------------------SHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHH------HHHHHHH
T ss_pred HHHHHHHHHhc----------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH------HHHHHHH
Confidence 66654443322 3344445555566666555566678999999987 6888888
Q ss_pred H-HHHHHHHHHHHHHHhHhheeeccchhhhhhHhHHHHHHHHHHHHH
Q 023063 180 W-YYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLI 225 (288)
Q Consensus 180 ~-~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~~~~~~~~~~~i~~~~ 225 (288)
. ++....+|+.++|.+.|++.+..|++..|.+.+++.+++.+..+.
T Consensus 352 ~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~ 398 (417)
T 2cfq_A 352 VCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVF 398 (417)
T ss_dssp HHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHh
Confidence 8 577888999999999999988888888888877776666655443
No 10
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.37 E-value=3.3e-12 Score=118.61 Aligned_cols=185 Identities=9% Similarity=-0.026 Sum_probs=133.1
Q ss_pred hHHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHH-----HHHH
Q 023063 23 TMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTIT-----IASI 97 (288)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~-----~~~~ 97 (288)
..+.+.+..++....+.....+++.|+.+.++.+..+.+.......+...++.++.|++.||+ |||+... .+..
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~r~~~~~~~~~~~~~ 362 (491)
T 4aps_A 284 SYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAW-KKNQPSSPTKFAVGLM 362 (491)
T ss_dssp THHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHT-TTC---CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHH-hccCCCchHHHHHHHH
Confidence 344455555566666677778889999988888766777777788888888899999999998 9886544 6666
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhH
Q 023063 98 IYQIGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKY 177 (288)
Q Consensus 98 l~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (288)
+..++.+++........ .+.+.+.+.+.+..++.+++.+...+...+++.|.+|++ .|+.+
T Consensus 363 ~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~------~~g~~ 423 (491)
T 4aps_A 363 FAGLSFLLMAIPGALYG-------------TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKA------FNSQM 423 (491)
T ss_dssp HHHHHHTTTHHHHHHCC-------------CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTT------CSSSS
T ss_pred HHHHHHHHHHHHHHhcC-------------CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHH------HHHHH
Confidence 66666655544321000 001124556667778889999998999999999999998 59999
Q ss_pred HHHHHHHHHHHHHHHHHhHhheeeccchhhhhhHhHHHHHHHHHHHHHhcc
Q 023063 178 FNWYYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAMFLSIIAFLIGYP 228 (288)
Q Consensus 178 ~~~~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~~~~~~~~~~~i~~~~~~~ 228 (288)
.+..+...++|..+++.+.+++.+. ++...|.+.+++.+++.+..+...+
T Consensus 424 ~g~~~~~~~~g~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (491)
T 4aps_A 424 MSMWFLSSSVGSALNAQLVTLYNAK-SEVAYFSYFGLGSVVLGIVLVFLSK 473 (491)
T ss_dssp THHHHHHHHHHHHHHHHHGGGGGGS-STTHHHHHTHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998887654 5666777777666666655555443
No 11
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.36 E-value=2.5e-11 Score=112.64 Aligned_cols=183 Identities=14% Similarity=0.066 Sum_probs=119.6
Q ss_pred hHHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHHH
Q 023063 23 TMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQIG 102 (288)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i~ 102 (288)
.........++..+..+....+...++.+..+.+..+.........+...++.++++++.||+ |||+.++.+.....++
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~-Grr~~~~~~~~~~~~~ 355 (491)
T 4gc0_A 277 VIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIG 355 (491)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh-cCcchhccchHHHHHH
Confidence 333333344444333333333444455567788888887777788888899999999999998 9999999998888887
Q ss_pred HHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHH
Q 023063 103 MICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYY 182 (288)
Q Consensus 103 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (288)
.+.+....... .+.............+++. ...+....+.+|.+|++ .|+.+.++.+
T Consensus 356 ~~~l~~~~~~~----------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~E~fPt~------~R~~~~g~~~ 412 (491)
T 4gc0_A 356 MFSLGTAFYTQ----------------APGIVALLSMLFYVAAFAM-SWGPVCWVLLSEIFPNA------IRGKALAIAV 412 (491)
T ss_dssp HHHHHHHHHTT----------------CCHHHHHHHHHHHHHHHHT-TTTHHHHHHHHHSSCTT------THHHHHHHHH
T ss_pred HHHHHHHHhcc----------------cchHHHHHHHHHHHHHHHh-HHHHHHHHHHHHhCCHh------HHHHHHHHHH
Confidence 77665543110 1111112222222222332 23466778999999998 6999999999
Q ss_pred HHHHHHHHHHHHhHhheeec------cchhhhhhHhHHHHHHHHHHHHHhccc
Q 023063 183 FVMGAAILVAVTVLVYIQDN------IGWGWGLGIPTFAMFLSIIAFLIGYPL 229 (288)
Q Consensus 183 ~~~~~g~~i~~~~~~~l~~~------~g~~~~f~~~~~~~~~~~i~~~~~~~~ 229 (288)
....+|+.+++.+.+.+.+. .++...|++.+++.+++.+..++..|+
T Consensus 413 ~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PE 465 (491)
T 4gc0_A 413 AAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPE 465 (491)
T ss_dssp HHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecC
Confidence 99999999988887765442 334456666666666666665555554
No 12
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.36 E-value=3.4e-14 Score=130.13 Aligned_cols=170 Identities=6% Similarity=-0.082 Sum_probs=110.3
Q ss_pred chHHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHHHH
Q 023063 22 ITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASIIYQI 101 (288)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l~~i 101 (288)
|..+.+....++...++..+.++++.|+++++|+++.+.+++.+...++..++++++|+++||+ |||++++++..++.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~-Grr~~l~~~~~~~~~ 85 (417)
T 2cfq_A 7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLV 85 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTS-TTCCHHHHHHHHTTS
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHH
Confidence 4455555555666666677778999999988999999999999999999999999999999998 999999988876654
Q ss_pred HHHHHHHHhhcCCCCCCCCCCcccccccccchH-HHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHH
Q 023063 102 GMICLTISAILPQLRPPPCEGEQVCQEANKGQV-AILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNW 180 (288)
Q Consensus 102 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (288)
+..........+ .. ..+..++++.+++.+...+...+...+..++. .++++..++.
T Consensus 86 ~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~----~~~~~~~~g~ 142 (417)
T 2cfq_A 86 MFAPFFIFIFGP-------------------LLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKV----SRRSNFEFGR 142 (417)
T ss_dssp CHHHHHHHTHHH-------------------HHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHH----HHHHTCCHHH
T ss_pred HHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh----hhhcccchHH
Confidence 332221101000 00 00112223333333332222233333333221 1145666666
Q ss_pred HHHHHHHHHHHHHHhHhheeeccchhhhhhHhHHHH
Q 023063 181 YYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPTFAM 216 (288)
Q Consensus 181 ~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~~~~~~~ 216 (288)
.+...++|..++|.+++++.+ .+|+..|++.++..
T Consensus 143 ~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~ 177 (417)
T 2cfq_A 143 ARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCA 177 (417)
T ss_dssp HSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHH
Confidence 666778899999999888765 57888887765543
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.09 E-value=1.9e-11 Score=109.47 Aligned_cols=164 Identities=9% Similarity=-0.030 Sum_probs=122.8
Q ss_pred chHHHHHHHHHHHHHhHHhhhhhHHHHhHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHH-HH
Q 023063 22 ITMPFIFSNEVCEKLAVVGFNTNMISYLTTQLHMPLTKAANTLTNFGGTGSLTPLIGAFVADAYAGRFWTITIASII-YQ 100 (288)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~laDr~~Grr~~i~~~~~l-~~ 100 (288)
+.++...+..++.....+.+..+++.|+++.+|.++.+.+.+.....++..++.++.|+++||+ |++ +..+..+ ..
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-~~~--~~~~~~~~~~ 275 (375)
T 2gfp_A 199 SGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STL--MWQSVICCLL 275 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHH-HHH--HHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH--HHHHHHHHHH
Confidence 4566666677777788888888889999888999999999999999999999999999999998 772 2333322 22
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCcccccccccchHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHH
Q 023063 101 IGMICLTISAILPQLRPPPCEGEQVCQEANKGQVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNW 180 (288)
Q Consensus 101 i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (288)
++......... .+.+.+.+.+..++.+++.+...+...++..|.+| + +|++..+.
T Consensus 276 ~~~~~~~~~~~------------------~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~------~~g~~~g~ 330 (375)
T 2gfp_A 276 AGLLMWIPDWF------------------GVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-F------LAGTAGAL 330 (375)
T ss_dssp TSSSSSHHHHH------------------HHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-H------HHHHHHHH
T ss_pred HHHHHHHHhhh------------------ccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-c------ccchHHHH
Confidence 22221111100 01144556667778889999999999999999988 4 69999999
Q ss_pred HHHHHHHHHHHHHHhHhheeeccchhhhhhHhH
Q 023063 181 YYFVMGAAILVAVTVLVYIQDNIGWGWGLGIPT 213 (288)
Q Consensus 181 ~~~~~~~g~~i~~~~~~~l~~~~g~~~~f~~~~ 213 (288)
.+...++|..++|.+.+.+.+..++...+.+..
T Consensus 331 ~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~ 363 (375)
T 2gfp_A 331 VGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTL 363 (375)
T ss_dssp HHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 999999999999999998877777776665543
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.44 E-value=5.1e-08 Score=91.09 Aligned_cols=64 Identities=9% Similarity=0.093 Sum_probs=55.7
Q ss_pred hHHHHHHHHHHHHHhccCcchhhhhhhhcccCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHhHhheeec
Q 023063 133 QVAILYVSLLLAALGSGGIRPCVVAFGADQFDETDPKQATKTWKYFNWYYFVMGAAILVAVTVLVYIQDN 202 (288)
Q Consensus 133 ~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~ 202 (288)
+.+.+.+..++.+++.+...+...++..|..|++ .|++..++.+...++|+.++|.+.+.+.+.
T Consensus 404 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~------~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~ 467 (524)
T 2xut_A 404 SIFWQILPYALLTFGEVLVSATGLEFAYSQAPKA------MKGTIMSFWTLSVTVGNLWVLLANVSVKSP 467 (524)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTT------CCTTTHHHHGGGHHHHHHHHHHHHHHTTSC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHH------HHhHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4455666778889999998999999999999987 699999999999999999999999988763
Done!