BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023064
(288 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3T6P|A Chain A, Iap Antagonist-Induced Conformational Change In Ciap1
Promotes E3 Ligase Activation Via Dimerization
Length = 345
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 240 CRRCGEKESSVLLLPCRHLCLCTVCGSCLIGSCPVCNFVVDASLHVNLS 288
C+ C +KE SV+ +PC HL +C C L CP+C ++ ++ LS
Sbjct: 298 CKVCMDKEVSVVFIPCGHLVVCQECAPSL-RKCPICRGIIKGTVRTFLS 345
>pdb|3EB5|A Chain A, Structure Of The Ciap2 Ring Domain
pdb|3EB6|A Chain A, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 74
Score = 35.8 bits (81), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 240 CRRCGEKESSVLLLPCRHLCLCTVCGSCLIGSCPVCNFVVDASLHVNLS 288
C+ C +KE S++ +PC HL +C C L CP+C + ++ LS
Sbjct: 27 CKVCMDKEVSIVFIPCGHLVVCKDCAPSL-RKCPICRSTIKGTVRTFLS 74
>pdb|3VGO|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|B Chain B, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|C Chain C, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
Length = 394
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 11/50 (22%)
Query: 233 VGGGRMLCRRCGEKESSVLLLPCRHLCLCTVCGSCLIG-------SCPVC 275
+G LC+ C E + V + PC HL +C SCL CP C
Sbjct: 334 MGSTFQLCKICAENDKDVKIEPCGHL----MCTSCLTAWQESDGQGCPFC 379
>pdb|2ECG|A Chain A, Solution Structure Of The Ring Domain Of The Baculoviral
Iap Repeat-Containing Protein 4 From Homo Sapiens
Length = 75
Score = 32.0 bits (71), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 239 LCRRCGEKESSVLLLPCRHLCLCTVCGSCLIGSCPVCNFVVDASLHVNLS 288
LC+ C ++ +++ +PC HL C C + CP+C V+ + +S
Sbjct: 27 LCKICMDRNIAIVFVPCGHLVTCKQCAE-AVDKCPMCYTVITFKQKIFMS 75
>pdb|2YHN|A Chain A, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHN|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|A Chain A, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|C Chain C, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|E Chain E, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|G Chain G, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
Length = 79
Score = 31.6 bits (70), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 238 MLCRRCGEKESSVLLLPCRHLCLCTVCGSCLIGSCPVCNFVVDASLHVNL 287
MLC C E+E + PC H C C + + SCPVC V+ HV L
Sbjct: 19 MLCMVCCEEEINSTFCPCGHTVCCESCAA-QLQSCPVCRSRVEHVQHVYL 67
>pdb|4IC2|A Chain A, Crystal Structure Of The Xiap Ring Domain
pdb|4IC2|B Chain B, Crystal Structure Of The Xiap Ring Domain
Length = 74
Score = 31.6 bits (70), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 239 LCRRCGEKESSVLLLPCRHLCLCTVCGSCLIGSCPVCNFVVDASLHVNLS 288
LC+ C ++ +++ +PC HL C C + CP+C V+ + +S
Sbjct: 26 LCKICMDRNIAIVFVPCGHLVTCKQCAE-AVDKCPMCYTVITFKQKIFMS 74
>pdb|2Y1M|A Chain A, Structure Of Native C-Cbl
pdb|2Y1M|B Chain B, Structure Of Native C-Cbl
pdb|2Y1M|C Chain C, Structure Of Native C-Cbl
pdb|2Y1M|D Chain D, Structure Of Native C-Cbl
pdb|2Y1M|E Chain E, Structure Of Native C-Cbl
pdb|2Y1M|F Chain F, Structure Of Native C-Cbl
pdb|2Y1N|A Chain A, Structure Of C-Cbl-Zap-70 Peptide Complex
pdb|2Y1N|C Chain C, Structure Of C-Cbl-Zap-70 Peptide Complex
Length = 389
Score = 31.6 bits (70), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 11/50 (22%)
Query: 233 VGGGRMLCRRCGEKESSVLLLPCRHLCLCTVCGSCLIG-------SCPVC 275
+G LC+ C E + V + PC HL +C SCL CP C
Sbjct: 328 MGSTFQLCKICAENDKDVKIEPCGHL----MCTSCLTSWQESEGQGCPFC 373
>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 388
Score = 31.6 bits (70), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 11/50 (22%)
Query: 233 VGGGRMLCRRCGEKESSVLLLPCRHLCLCTVCGSCLIG-------SCPVC 275
+G LC+ C E + V + PC HL +C SCL CP C
Sbjct: 328 MGSTFQLCKICAENDKDVKIEPCGHL----MCTSCLTSWQESEGQGCPFC 373
>pdb|4A4C|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 391
Score = 31.6 bits (70), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 11/50 (22%)
Query: 233 VGGGRMLCRRCGEKESSVLLLPCRHLCLCTVCGSCLIG-------SCPVC 275
+G LC+ C E + V + PC HL +C SCL CP C
Sbjct: 330 MGSTFQLCKICAENDKDVKIEPCGHL----MCTSCLTSWQESEGQGCPFC 375
>pdb|4A4B|A Chain A, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
Length = 391
Score = 31.6 bits (70), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 11/50 (22%)
Query: 233 VGGGRMLCRRCGEKESSVLLLPCRHLCLCTVCGSCLIG-------SCPVC 275
+G LC+ C E + V + PC HL +C SCL CP C
Sbjct: 330 MGSTFQLCKICAENDKDVKIEPCGHL----MCTSCLTSWQESEGQGCPFC 375
>pdb|4IC3|A Chain A, Crystal Structure Of The F495l Mutant Xiap Ring Domain
pdb|4IC3|B Chain B, Crystal Structure Of The F495l Mutant Xiap Ring Domain
Length = 74
Score = 31.2 bits (69), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 239 LCRRCGEKESSVLLLPCRHLCLCTVCGSCLIGSCPVCNFVV 279
LC+ C ++ +++ +PC HL C C + CP+C V+
Sbjct: 26 LCKICMDRNIAIVFVPCGHLVTCKQCAE-AVDKCPMCYTVI 65
>pdb|2LDR|A Chain A, Solution Structure Of Helix-Ring Domain Of Cbl-B In The
Tyr363 Phosphorylated Form
Length = 82
Score = 31.2 bits (69), Expect = 0.76, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 11/50 (22%)
Query: 233 VGGGRMLCRRCGEKESSVLLLPCRHLCLCTVCGSCLIG-------SCPVC 275
+G LC+ C E + V + PC HL +C SCL CP C
Sbjct: 22 MGSTFQLCKICAENDKDVKIEPCGHL----MCTSCLTAWQESDGQGCPFC 67
>pdb|4AUQ|B Chain B, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|E Chain E, Structure Of Birc7-Ubch5b-Ub Complex
Length = 62
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 6/51 (11%)
Query: 240 CRRCGEKESSVLLLPCRHLCLCTVCGSCLIG--SCPVCNFVVDASLHVNLS 288
C+ C ++ S++ +PC HL VC C G CP+C V + + LS
Sbjct: 16 CKVCLDRAVSIVFVPCGHL----VCAECAPGLQLCPICRAPVRSRVRTFLS 62
>pdb|2EA5|A Chain A, Solution Structure Of The Ring Domain Of The Human Cell
Growth Regulator With Ring Finger Domain 1 Protein
Length = 68
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 240 CRRCGEKESSVLLLPCRHLCLCTVCGSCLIGSCPVCNFVVDASL 283
C C + +LLPCRH CLC C CP+C V S
Sbjct: 18 CVVCQNGTVNWVLLPCRHTCLCDGCVK-YFQQCPMCRQFVQESF 60
>pdb|4A49|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
Length = 84
Score = 27.7 bits (60), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 11/50 (22%)
Query: 233 VGGGRMLCRRCGEKESSVLLLPCRHLCLCTVCGSCLIG-------SCPVC 275
+G LC+ C E + V + PC HL +C SCL CP C
Sbjct: 23 MGSTFQLCKICAENDKDVKIEPCGHL----MCTSCLTSWQESEGQGCPFC 68
>pdb|3SDE|B Chain B, Crystal Structure Of A Paraspeckle-Protein Heterodimer,
Pspc1NONO
Length = 261
Score = 27.7 bits (60), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 87 QQQQSEIDRYIAQHTEKVILELEEQRKRQSRMLI 120
+QQQ ++DR I + EK+ +E+E R ML+
Sbjct: 228 KQQQDQVDRNIKEAREKLEMEMEAARHEHQVMLM 261
>pdb|2K4D|A Chain A, E2-C-Cbl Recognition Is Necessary But Not Sufficient For
Ubiquitination Activity
Length = 83
Score = 27.3 bits (59), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 11/57 (19%)
Query: 233 VGGGRMLCRRCGEKESSVLLLPCRHLCLCTVCGSCLIG-------SCPVCNFVVDAS 282
+G LC+ C E + V + PC HL +C SCL CP C + +
Sbjct: 20 MGSTFQLCKICAENDKDVKIEPCGHL----MCTSCLTSWQESEGQGCPFCRCEIKGT 72
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.134 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,719,384
Number of Sequences: 62578
Number of extensions: 229630
Number of successful extensions: 609
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 598
Number of HSP's gapped (non-prelim): 24
length of query: 288
length of database: 14,973,337
effective HSP length: 98
effective length of query: 190
effective length of database: 8,840,693
effective search space: 1679731670
effective search space used: 1679731670
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)