Query 023064
Match_columns 288
No_of_seqs 217 out of 1132
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 08:11:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023064.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023064hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1100 Predicted E3 ubiquitin 100.0 5.1E-39 1.1E-43 288.9 10.7 189 81-287 15-207 (207)
2 KOG4265 Predicted E3 ubiquitin 99.3 1.6E-12 3.5E-17 124.5 1.9 51 237-287 290-343 (349)
3 PF13920 zf-C3HC4_3: Zinc fing 99.0 1.3E-10 2.8E-15 81.9 1.8 44 238-281 3-49 (50)
4 KOG4172 Predicted E3 ubiquitin 98.9 3E-11 6.4E-16 88.1 -3.3 51 238-288 8-62 (62)
5 KOG4275 Predicted E3 ubiquitin 98.9 2.3E-10 4.9E-15 107.7 -1.4 50 237-287 300-349 (350)
6 KOG1571 Predicted E3 ubiquitin 98.7 2.3E-09 5E-14 103.2 0.1 50 238-288 306-355 (355)
7 KOG1785 Tyrosine kinase negati 97.8 6.7E-06 1.5E-10 80.8 0.6 52 234-286 366-422 (563)
8 PF13923 zf-C3HC4_2: Zinc fing 97.4 5.4E-05 1.2E-09 50.6 1.2 35 240-275 1-39 (39)
9 PHA02929 N1R/p28-like protein; 97.3 0.00015 3.3E-09 67.2 3.5 47 238-285 175-232 (238)
10 PF14634 zf-RING_5: zinc-RING 97.3 9.8E-05 2.1E-09 50.8 1.6 37 240-277 2-44 (44)
11 KOG0823 Predicted E3 ubiquitin 97.3 0.00014 3E-09 66.9 2.3 48 236-284 46-99 (230)
12 PF13639 zf-RING_2: Ring finge 97.2 0.00012 2.7E-09 49.9 1.1 37 239-276 2-44 (44)
13 KOG0978 E3 ubiquitin ligase in 97.2 0.0023 5E-08 67.1 10.6 46 235-281 641-690 (698)
14 smart00184 RING Ring finger. E 97.1 0.00024 5.3E-09 44.9 1.7 35 240-275 1-39 (39)
15 PLN03208 E3 ubiquitin-protein 97.1 0.00039 8.6E-09 62.6 3.3 44 237-281 18-80 (193)
16 cd00162 RING RING-finger (Real 97.1 0.00036 7.8E-09 45.7 2.2 40 239-279 1-45 (45)
17 KOG0317 Predicted E3 ubiquitin 97.0 0.00026 5.6E-09 67.0 1.6 50 236-286 238-290 (293)
18 PF00097 zf-C3HC4: Zinc finger 96.8 0.00056 1.2E-08 45.6 1.3 35 240-275 1-41 (41)
19 PF14447 Prok-RING_4: Prokaryo 96.7 0.00073 1.6E-08 49.5 1.5 43 238-281 8-51 (55)
20 KOG0320 Predicted E3 ubiquitin 96.4 0.0011 2.3E-08 59.2 0.8 49 238-287 132-187 (187)
21 TIGR00599 rad18 DNA repair pro 96.3 0.0017 3.7E-08 64.3 1.8 45 236-281 25-72 (397)
22 KOG2164 Predicted E3 ubiquitin 96.1 0.0031 6.6E-08 63.9 2.3 44 237-281 186-237 (513)
23 COG5574 PEX10 RING-finger-cont 96.0 0.0024 5.3E-08 60.0 1.0 44 236-280 214-262 (271)
24 PF15227 zf-C3HC4_4: zinc fing 96.0 0.0041 8.8E-08 42.7 1.6 35 240-275 1-42 (42)
25 PHA02926 zinc finger-like prot 95.9 0.0024 5.2E-08 58.9 0.6 46 236-282 169-232 (242)
26 KOG2177 Predicted E3 ubiquitin 95.7 0.003 6.4E-08 55.3 0.3 40 237-277 13-55 (386)
27 smart00504 Ubox Modified RING 95.7 0.0079 1.7E-07 43.2 2.4 43 238-281 2-47 (63)
28 PF13445 zf-RING_UBOX: RING-ty 95.3 0.0064 1.4E-07 42.2 0.7 27 240-268 1-31 (43)
29 COG5236 Uncharacterized conser 95.1 0.012 2.6E-07 57.6 2.1 45 236-281 60-109 (493)
30 COG5540 RING-finger-containing 95.0 0.014 3.1E-07 56.1 2.3 42 238-280 324-372 (374)
31 KOG4692 Predicted E3 ubiquitin 94.8 0.011 2.5E-07 57.8 1.0 45 236-281 421-468 (489)
32 COG5432 RAD18 RING-finger-cont 94.2 0.019 4.2E-07 55.0 1.2 42 238-280 26-70 (391)
33 KOG0287 Postreplication repair 93.3 0.025 5.4E-07 55.2 0.1 45 237-282 23-70 (442)
34 KOG0802 E3 ubiquitin ligase [P 93.2 0.028 6E-07 57.5 0.3 43 237-280 291-341 (543)
35 PF12678 zf-rbx1: RING-H2 zinc 93.0 0.054 1.2E-06 41.2 1.6 28 248-276 43-73 (73)
36 COG5243 HRD1 HRD ubiquitin lig 92.9 0.047 1E-06 54.0 1.4 45 234-279 284-344 (491)
37 KOG4628 Predicted E3 ubiquitin 92.0 0.098 2.1E-06 51.2 2.3 43 239-282 231-280 (348)
38 KOG1814 Predicted E3 ubiquitin 89.6 0.13 2.9E-06 51.2 0.8 46 234-280 181-240 (445)
39 KOG1039 Predicted E3 ubiquitin 89.4 0.18 3.9E-06 49.4 1.5 48 235-283 159-224 (344)
40 PF15619 Lebercilin: Ciliary p 88.4 19 0.00041 32.6 13.9 93 84-182 50-150 (194)
41 KOG2113 Predicted RNA binding 87.5 0.44 9.6E-06 46.3 2.8 51 236-286 342-393 (394)
42 PF04641 Rtf2: Rtf2 RING-finge 87.4 0.47 1E-05 44.2 2.9 47 235-282 111-163 (260)
43 KOG3039 Uncharacterized conser 87.1 9.3 0.0002 36.3 11.1 45 236-281 220-271 (303)
44 KOG0804 Cytoplasmic Zn-finger 87.0 24 0.00052 36.1 14.6 76 98-173 350-426 (493)
45 KOG2879 Predicted E3 ubiquitin 86.9 0.47 1E-05 45.3 2.5 45 235-280 237-287 (298)
46 KOG3002 Zn finger protein [Gen 86.4 0.36 7.7E-06 46.4 1.5 45 236-281 47-92 (299)
47 PF09726 Macoilin: Transmembra 86.0 33 0.00071 36.8 15.9 55 129-183 545-599 (697)
48 PF04710 Pellino: Pellino; In 85.6 0.25 5.4E-06 49.2 0.0 42 246-287 356-411 (416)
49 PF14835 zf-RING_6: zf-RING of 85.4 0.56 1.2E-05 35.6 1.8 41 238-279 8-50 (65)
50 KOG1916 Nuclear protein, conta 85.2 46 0.001 37.1 16.4 74 79-155 878-958 (1283)
51 PF00038 Filament: Intermediat 85.1 33 0.00072 32.1 16.8 96 85-184 181-282 (312)
52 KOG4159 Predicted E3 ubiquitin 84.5 0.41 8.9E-06 47.7 1.0 46 235-281 82-130 (398)
53 KOG1103 Predicted coiled-coil 84.3 23 0.00051 35.4 12.8 40 78-117 136-185 (561)
54 KOG1813 Predicted E3 ubiquitin 83.7 0.43 9.3E-06 45.9 0.7 46 239-285 243-291 (313)
55 KOG0825 PHD Zn-finger protein 83.6 0.27 5.8E-06 52.7 -0.8 45 239-284 125-175 (1134)
56 PF04564 U-box: U-box domain; 82.8 0.87 1.9E-05 34.4 1.9 44 237-281 4-51 (73)
57 PF12126 DUF3583: Protein of u 81.2 56 0.0012 31.8 14.1 41 82-126 25-65 (324)
58 PF06785 UPF0242: Uncharacteri 80.8 36 0.00078 33.7 12.5 29 83-112 91-119 (401)
59 PF14362 DUF4407: Domain of un 80.1 39 0.00084 31.7 12.5 59 89-158 106-164 (301)
60 PF01166 TSC22: TSC-22/dip/bun 78.8 2.7 5.8E-05 31.3 3.2 31 136-166 14-44 (59)
61 PF15397 DUF4618: Domain of un 77.6 65 0.0014 30.6 12.9 78 90-167 140-224 (258)
62 smart00787 Spc7 Spc7 kinetocho 76.6 35 0.00076 33.0 11.1 30 130-159 212-241 (312)
63 COG4985 ABC-type phosphate tra 76.0 17 0.00038 34.3 8.5 38 79-124 159-196 (289)
64 PF13815 Dzip-like_N: Iguana/D 76.0 12 0.00025 30.9 6.8 66 77-159 52-117 (118)
65 KOG2932 E3 ubiquitin ligase in 75.9 1.1 2.3E-05 43.7 0.6 41 238-280 91-134 (389)
66 TIGR01837 PHA_granule_1 poly(h 75.9 35 0.00075 28.3 9.6 66 91-156 44-116 (118)
67 KOG1001 Helicase-like transcri 75.7 1.1 2.3E-05 47.6 0.6 41 238-280 455-500 (674)
68 PF11559 ADIP: Afadin- and alp 75.4 27 0.00058 29.5 9.1 53 128-180 58-110 (151)
69 COG5152 Uncharacterized conser 75.2 0.83 1.8E-05 42.0 -0.3 46 239-285 198-246 (259)
70 PF12329 TMF_DNA_bd: TATA elem 74.6 36 0.00078 26.0 8.9 56 128-183 4-59 (74)
71 KOG0828 Predicted E3 ubiquitin 74.3 0.92 2E-05 46.5 -0.3 46 235-281 569-635 (636)
72 KOG0288 WD40 repeat protein Ti 73.9 1E+02 0.0022 31.4 13.7 69 85-157 3-76 (459)
73 COG5220 TFB3 Cdk activating ki 73.2 0.89 1.9E-05 42.9 -0.6 40 237-277 10-61 (314)
74 KOG3091 Nuclear pore complex, 72.5 24 0.00052 36.4 9.2 51 136-188 376-428 (508)
75 TIGR03752 conj_TIGR03752 integ 72.1 43 0.00093 34.4 10.9 34 81-115 63-96 (472)
76 PF10272 Tmpp129: Putative tra 71.6 3.2 6.9E-05 41.0 2.7 34 235-279 301-350 (358)
77 KOG4797 Transcriptional regula 70.1 22 0.00047 29.8 6.9 30 137-166 68-97 (123)
78 KOG0980 Actin-binding protein 70.0 1.9E+02 0.004 32.3 15.6 48 136-183 459-506 (980)
79 COG3074 Uncharacterized protei 69.7 43 0.00093 26.0 7.9 31 137-167 40-70 (79)
80 KOG2113 Predicted RNA binding 69.3 2.6 5.6E-05 41.2 1.5 50 236-285 135-188 (394)
81 smart00744 RINGv The RING-vari 69.2 2.9 6.3E-05 29.5 1.4 37 239-276 1-49 (49)
82 PF11180 DUF2968: Protein of u 69.1 92 0.002 28.4 12.2 79 79-157 102-182 (192)
83 PF10205 KLRAQ: Predicted coil 68.5 66 0.0014 26.5 9.4 62 97-160 10-71 (102)
84 PF15070 GOLGA2L5: Putative go 68.0 1.1E+02 0.0024 32.5 13.2 84 85-171 164-255 (617)
85 PRK10884 SH3 domain-containing 67.5 48 0.001 30.3 9.3 33 129-161 125-157 (206)
86 PF11544 Spc42p: Spindle pole 66.8 53 0.0012 25.7 8.0 39 128-166 11-49 (76)
87 PF04216 FdhE: Protein involve 66.6 3.2 6.8E-05 39.1 1.5 48 238-286 173-228 (290)
88 smart00338 BRLZ basic region l 66.3 48 0.001 24.1 8.8 30 133-162 30-59 (65)
89 PRK10920 putative uroporphyrin 66.2 72 0.0016 31.9 11.0 84 78-163 50-134 (390)
90 PF13935 Ead_Ea22: Ead/Ea22-li 65.7 62 0.0014 27.4 9.1 56 87-149 80-139 (139)
91 PF07111 HCR: Alpha helical co 65.6 1.9E+02 0.0042 31.3 14.3 73 85-157 95-183 (739)
92 PRK09039 hypothetical protein; 65.5 1.4E+02 0.003 29.1 15.3 51 136-186 137-187 (343)
93 KOG3859 Septins (P-loop GTPase 65.2 71 0.0015 31.4 10.2 21 145-165 379-399 (406)
94 PRK11637 AmiB activator; Provi 64.8 1.5E+02 0.0033 29.3 13.7 16 80-95 43-58 (428)
95 PF00038 Filament: Intermediat 64.7 1.2E+02 0.0027 28.2 12.6 83 78-166 9-91 (312)
96 PF14570 zf-RING_4: RING/Ubox 64.7 3 6.5E-05 29.8 0.7 25 254-279 19-47 (48)
97 KOG0971 Microtubule-associated 64.6 1.4E+02 0.0031 33.5 13.3 48 136-183 448-502 (1243)
98 PF07888 CALCOCO1: Calcium bin 64.2 1.9E+02 0.0042 30.3 16.1 75 100-176 172-246 (546)
99 PF05121 GvpK: Gas vesicle pro 63.4 41 0.00089 27.0 7.0 38 121-158 27-67 (88)
100 PRK00888 ftsB cell division pr 63.3 27 0.00059 28.4 6.2 37 129-165 27-63 (105)
101 PF13747 DUF4164: Domain of un 63.0 75 0.0016 25.2 11.3 40 132-171 35-74 (89)
102 KOG4571 Activating transcripti 62.9 35 0.00076 33.0 7.7 31 136-166 255-285 (294)
103 KOG0249 LAR-interacting protei 62.5 65 0.0014 35.0 10.2 86 96-185 167-258 (916)
104 COG2433 Uncharacterized conser 62.4 65 0.0014 34.3 10.1 27 129-155 474-500 (652)
105 KOG0612 Rho-associated, coiled 62.4 1.5E+02 0.0031 34.2 13.2 89 92-185 465-553 (1317)
106 PF00804 Syntaxin: Syntaxin; 61.7 68 0.0015 24.2 9.4 83 99-183 14-102 (103)
107 PF03854 zf-P11: P-11 zinc fin 61.0 3.5 7.6E-05 29.7 0.5 43 239-283 4-49 (50)
108 smart00502 BBC B-Box C-termina 60.9 78 0.0017 24.7 11.3 54 82-139 29-82 (127)
109 cd00729 rubredoxin_SM Rubredox 60.9 3.6 7.9E-05 27.0 0.6 16 269-284 18-33 (34)
110 PF15066 CAGE1: Cancer-associa 60.7 1.7E+02 0.0036 30.4 12.3 60 128-187 452-526 (527)
111 PRK04863 mukB cell division pr 60.7 3.1E+02 0.0066 32.3 15.9 31 133-163 366-396 (1486)
112 PF04380 BMFP: Membrane fusoge 60.5 76 0.0017 24.5 8.1 20 137-156 58-77 (79)
113 PF09726 Macoilin: Transmembra 59.9 2.5E+02 0.0055 30.3 15.0 38 148-185 543-580 (697)
114 PF00769 ERM: Ezrin/radixin/mo 59.1 36 0.00077 31.7 7.0 44 135-178 25-68 (246)
115 PF07412 Geminin: Geminin; In 58.7 74 0.0016 29.2 8.7 59 101-174 105-163 (200)
116 KOG0311 Predicted E3 ubiquitin 57.7 1.2 2.7E-05 43.8 -3.0 46 236-282 42-92 (381)
117 PF15254 CCDC14: Coiled-coil d 57.5 1.2E+02 0.0025 33.3 11.1 58 100-157 495-557 (861)
118 KOG0163 Myosin class VI heavy 57.5 2.8E+02 0.0061 30.9 13.8 27 89-115 919-949 (1259)
119 PF04859 DUF641: Plant protein 57.1 80 0.0017 27.0 8.2 70 80-154 48-126 (131)
120 PF11500 Cut12: Spindle pole b 56.7 1E+02 0.0023 27.0 9.0 25 132-156 101-125 (152)
121 KOG0241 Kinesin-like protein [ 55.9 73 0.0016 36.0 9.4 55 121-178 381-436 (1714)
122 PRK00888 ftsB cell division pr 55.7 41 0.00088 27.4 6.0 38 129-166 34-71 (105)
123 KOG4673 Transcription factor T 55.2 2E+02 0.0044 31.4 12.3 57 123-182 471-527 (961)
124 PF12240 Angiomotin_C: Angiomo 54.5 1.8E+02 0.0039 26.9 13.2 76 93-177 70-163 (205)
125 PRK06975 bifunctional uroporph 54.1 1.4E+02 0.003 31.7 11.2 77 85-163 343-419 (656)
126 smart00338 BRLZ basic region l 53.9 83 0.0018 22.8 7.6 34 144-177 27-60 (65)
127 PRK15422 septal ring assembly 53.9 1.1E+02 0.0024 24.2 9.1 30 137-166 40-69 (79)
128 PF04799 Fzo_mitofusin: fzo-li 53.5 1.3E+02 0.0027 27.1 9.1 79 95-184 79-164 (171)
129 PF09731 Mitofilin: Mitochondr 53.2 2.7E+02 0.0059 28.6 15.4 29 143-171 378-406 (582)
130 cd00350 rubredoxin_like Rubred 53.0 5.7 0.00012 25.7 0.5 16 269-284 17-32 (33)
131 PF14193 DUF4315: Domain of un 52.3 27 0.00059 27.6 4.3 25 134-158 6-30 (83)
132 PRK11448 hsdR type I restricti 52.2 56 0.0012 37.0 8.3 22 140-161 188-209 (1123)
133 KOG1002 Nucleotide excision re 52.1 3.8 8.2E-05 42.7 -0.7 43 236-279 535-585 (791)
134 PF10367 Vps39_2: Vacuolar sor 51.9 10 0.00022 29.5 1.8 26 239-265 80-107 (109)
135 PF05565 Sipho_Gp157: Siphovir 51.6 1E+02 0.0022 26.8 8.2 52 136-187 40-91 (162)
136 KOG3842 Adaptor protein Pellin 51.4 9.2 0.0002 37.6 1.8 52 236-287 340-424 (429)
137 PF06005 DUF904: Protein of un 50.8 1.1E+02 0.0024 23.4 9.1 23 143-165 39-61 (72)
138 KOG0297 TNF receptor-associate 50.2 8.8 0.00019 38.1 1.5 49 236-285 20-72 (391)
139 PF15290 Syntaphilin: Golgi-lo 50.0 1.9E+02 0.0041 28.1 10.3 24 129-152 82-105 (305)
140 COG2959 HemX Uncharacterized e 49.7 2.2E+02 0.0049 28.6 11.0 82 78-163 46-132 (391)
141 KOG0977 Nuclear envelope prote 49.4 96 0.0021 32.5 8.9 62 100-161 114-180 (546)
142 PRK10884 SH3 domain-containing 48.4 2.2E+02 0.0047 26.0 12.4 40 129-168 118-157 (206)
143 PRK13729 conjugal transfer pil 48.2 64 0.0014 33.2 7.3 31 135-165 89-119 (475)
144 PF10186 Atg14: UV radiation r 48.2 2.2E+02 0.0047 25.9 13.9 12 87-98 37-48 (302)
145 PF14257 DUF4349: Domain of un 48.1 69 0.0015 29.5 7.0 23 130-152 170-192 (262)
146 PF12761 End3: Actin cytoskele 48.0 39 0.00084 30.9 5.1 49 134-185 94-142 (195)
147 TIGR01069 mutS2 MutS2 family p 47.7 2.5E+02 0.0054 30.5 12.0 12 87-98 507-518 (771)
148 PRK14714 DNA polymerase II lar 47.4 14 0.00031 42.0 2.7 48 237-285 667-725 (1337)
149 PRK13182 racA polar chromosome 47.1 1.5E+02 0.0033 26.4 8.7 34 122-155 111-144 (175)
150 PF00170 bZIP_1: bZIP transcri 47.1 1.1E+02 0.0023 22.2 8.2 33 145-177 28-60 (64)
151 PF05290 Baculo_IE-1: Baculovi 46.5 8.3 0.00018 33.3 0.6 45 238-282 81-134 (140)
152 PF14662 CCDC155: Coiled-coil 46.4 2.3E+02 0.0051 25.9 12.1 79 101-185 38-116 (193)
153 PLN02189 cellulose synthase 45.9 14 0.00031 41.2 2.4 44 237-280 34-87 (1040)
154 TIGR01069 mutS2 MutS2 family p 45.9 3.3E+02 0.0071 29.7 12.6 31 81-112 515-545 (771)
155 PRK14140 heat shock protein Gr 45.6 77 0.0017 28.7 6.7 31 135-165 43-73 (191)
156 KOG0980 Actin-binding protein 45.4 1.6E+02 0.0036 32.7 10.0 48 138-185 353-400 (980)
157 PF12999 PRKCSH-like: Glucosid 45.1 1.1E+02 0.0025 27.4 7.6 30 132-161 142-171 (176)
158 smart00503 SynN Syntaxin N-ter 44.8 1.5E+02 0.0032 23.2 11.0 84 98-185 14-103 (117)
159 PF06005 DUF904: Protein of un 44.7 1.4E+02 0.0031 22.8 10.2 35 132-166 21-55 (72)
160 PRK00409 recombination and DNA 44.5 4.3E+02 0.0094 28.8 13.3 21 6-26 357-377 (782)
161 PRK11637 AmiB activator; Provi 44.5 3.3E+02 0.0071 27.0 12.1 13 85-97 44-56 (428)
162 TIGR03319 YmdA_YtgF conserved 44.4 3.8E+02 0.0083 27.7 15.3 6 250-255 246-251 (514)
163 PF06364 DUF1068: Protein of u 44.1 1.5E+02 0.0033 26.6 8.1 72 81-156 77-165 (176)
164 PF10083 DUF2321: Uncharacteri 43.6 7.1 0.00015 34.5 -0.3 26 260-285 30-55 (158)
165 PF04156 IncA: IncA protein; 43.5 2.2E+02 0.0047 24.6 14.7 52 132-183 126-177 (191)
166 PF07716 bZIP_2: Basic region 43.2 1.2E+02 0.0025 21.4 8.0 24 135-158 31-54 (54)
167 COG5175 MOT2 Transcriptional r 43.2 8.4 0.00018 38.2 0.2 42 239-281 16-65 (480)
168 PF14916 CCDC92: Coiled-coil d 43.1 67 0.0015 24.0 4.9 22 128-149 20-41 (60)
169 PF05266 DUF724: Protein of un 42.8 2.5E+02 0.0055 25.2 12.3 31 131-161 126-156 (190)
170 PHA03415 putative internal vir 42.7 85 0.0018 34.6 7.4 87 79-165 298-397 (1019)
171 PRK00409 recombination and DNA 42.4 3.3E+02 0.0072 29.6 12.0 13 86-98 511-523 (782)
172 PF04977 DivIC: Septum formati 42.2 67 0.0015 23.6 5.0 33 130-162 18-50 (80)
173 PF14738 PaaSYMP: Solute carri 41.5 2.1E+02 0.0045 25.1 8.6 56 89-144 92-147 (154)
174 KOG0994 Extracellular matrix g 41.2 3.8E+02 0.0082 31.3 12.1 35 138-172 1614-1648(1758)
175 PRK10963 hypothetical protein; 40.7 96 0.0021 28.2 6.7 11 145-155 53-63 (223)
176 COG4306 Uncharacterized protei 40.6 9.8 0.00021 32.8 0.2 26 260-285 30-55 (160)
177 cd07665 BAR_SNX1 The Bin/Amphi 40.4 3.1E+02 0.0067 25.5 13.7 88 82-170 81-179 (234)
178 COG4942 Membrane-bound metallo 40.0 3.6E+02 0.0079 27.5 11.0 72 111-186 38-109 (420)
179 PF08614 ATG16: Autophagy prot 39.8 1.4E+02 0.0031 26.4 7.5 31 131-161 111-141 (194)
180 KOG4398 Predicted coiled-coil 39.6 1.4E+02 0.003 29.1 7.7 56 92-152 9-66 (359)
181 PRK05892 nucleoside diphosphat 39.0 1.4E+02 0.003 26.0 7.1 16 138-153 56-71 (158)
182 TIGR02209 ftsL_broad cell divi 38.8 85 0.0018 23.6 5.2 36 130-165 25-60 (85)
183 PF08172 CASP_C: CASP C termin 38.5 64 0.0014 30.3 5.2 41 139-186 89-129 (248)
184 PF12128 DUF3584: Protein of u 38.0 6.6E+02 0.014 28.7 14.4 70 86-156 719-791 (1201)
185 PF08702 Fib_alpha: Fibrinogen 37.9 2.6E+02 0.0057 24.0 11.2 97 79-179 20-126 (146)
186 cd00179 SynN Syntaxin N-termin 37.8 2.3E+02 0.005 23.3 11.9 21 138-158 50-70 (151)
187 PRK15365 type III secretion sy 37.5 1.8E+02 0.0039 24.0 7.0 42 115-156 48-93 (107)
188 PF06657 Cep57_MT_bd: Centroso 37.3 1.9E+02 0.0042 22.3 7.5 27 74-100 7-33 (79)
189 PF08654 DASH_Dad2: DASH compl 37.1 2.1E+02 0.0046 23.4 7.4 16 128-143 3-18 (103)
190 PHA02825 LAP/PHD finger-like p 36.9 25 0.00055 31.2 2.1 44 236-280 7-59 (162)
191 PRK03564 formate dehydrogenase 36.8 33 0.00071 33.4 3.1 41 238-278 188-235 (309)
192 COG5019 CDC3 Septin family pro 36.6 2.4E+02 0.0052 28.3 9.0 57 100-156 313-369 (373)
193 PF06818 Fez1: Fez1; InterPro 36.5 2.4E+02 0.0051 26.0 8.4 62 91-153 131-201 (202)
194 PF03980 Nnf1: Nnf1 ; InterPr 36.4 1.9E+02 0.0041 23.1 7.1 18 86-103 32-49 (109)
195 COG3120 Uncharacterized protei 36.4 2.2E+02 0.0048 24.6 7.6 31 155-185 94-124 (149)
196 KOG0608 Warts/lats-like serine 36.3 1.5E+02 0.0033 32.4 7.9 50 75-124 558-615 (1034)
197 COG1592 Rubrerythrin [Energy p 36.3 12 0.00027 33.2 0.1 31 237-284 134-164 (166)
198 KOG4657 Uncharacterized conser 36.3 3.8E+02 0.0082 25.3 15.5 87 77-165 15-101 (246)
199 TIGR02894 DNA_bind_RsfA transc 35.9 3.1E+02 0.0067 24.4 8.7 12 80-91 83-94 (161)
200 PF11471 Sugarporin_N: Maltopo 35.7 80 0.0017 23.4 4.3 25 143-167 32-56 (60)
201 COG1579 Zn-ribbon protein, pos 35.5 3.8E+02 0.0083 25.2 12.8 37 129-165 89-125 (239)
202 PF08202 MIS13: Mis12-Mtw1 pro 35.4 48 0.001 31.7 4.0 26 142-167 163-188 (301)
203 PF12718 Tropomyosin_1: Tropom 35.4 2.8E+02 0.0061 23.6 11.7 82 98-183 1-85 (143)
204 PRK05097 Ter macrodomain organ 35.4 60 0.0013 28.3 4.1 34 84-117 45-83 (150)
205 PF07888 CALCOCO1: Calcium bin 35.3 5.6E+02 0.012 27.0 16.0 21 160-180 293-313 (546)
206 PHA02562 46 endonuclease subun 35.2 4.8E+02 0.01 26.2 13.7 40 124-163 208-247 (562)
207 PRK14139 heat shock protein Gr 35.0 1.1E+02 0.0023 27.7 5.9 29 137-165 40-68 (185)
208 KOG2660 Locus-specific chromos 34.9 7.8 0.00017 37.9 -1.5 47 236-283 14-64 (331)
209 COG4357 Zinc finger domain con 34.7 20 0.00044 29.4 1.1 44 239-282 37-93 (105)
210 KOG3976 Mitochondrial F1F0-ATP 34.7 4.1E+02 0.0088 25.2 13.4 100 85-186 111-217 (247)
211 PF13851 GAS: Growth-arrest sp 34.5 3.5E+02 0.0075 24.4 10.0 39 128-166 92-130 (201)
212 KOG1962 B-cell receptor-associ 34.2 3.5E+02 0.0076 25.1 9.2 29 130-158 166-194 (216)
213 KOG1940 Zn-finger protein [Gen 34.0 8.7 0.00019 36.7 -1.3 44 239-284 160-210 (276)
214 PF13240 zinc_ribbon_2: zinc-r 34.0 17 0.00036 21.9 0.4 18 261-278 2-22 (23)
215 PF13863 DUF4200: Domain of un 33.7 2.5E+02 0.0055 22.6 11.6 26 132-157 77-102 (126)
216 PF10779 XhlA: Haemolysin XhlA 33.7 2E+02 0.0044 21.4 7.9 49 135-183 5-53 (71)
217 KOG1853 LIS1-interacting prote 33.7 4.5E+02 0.0097 25.4 14.1 8 136-143 122-129 (333)
218 KOG3564 GTPase-activating prot 33.7 4E+02 0.0087 28.0 10.2 76 93-182 27-102 (604)
219 PF04849 HAP1_N: HAP1 N-termin 33.6 4.1E+02 0.0089 25.9 9.9 52 135-186 233-284 (306)
220 PF10234 Cluap1: Clusterin-ass 33.5 3.1E+02 0.0066 26.2 8.9 56 92-149 162-217 (267)
221 PF08317 Spc7: Spc7 kinetochor 33.4 4.4E+02 0.0096 25.3 12.6 92 83-183 193-288 (325)
222 PF04977 DivIC: Septum formati 33.3 1.6E+02 0.0034 21.5 5.8 39 129-167 24-62 (80)
223 PRK02224 chromosome segregatio 32.9 6.5E+02 0.014 27.1 15.7 45 131-175 525-569 (880)
224 KOG1029 Endocytic adaptor prot 32.6 5.9E+02 0.013 28.4 11.6 33 92-124 346-378 (1118)
225 KOG3113 Uncharacterized conser 32.4 32 0.00069 32.9 2.1 49 236-285 110-163 (293)
226 PRK14143 heat shock protein Gr 32.4 2.5E+02 0.0054 26.3 8.1 25 90-115 66-90 (238)
227 PF14282 FlxA: FlxA-like prote 32.0 2.3E+02 0.005 22.9 6.9 53 135-187 18-74 (106)
228 PF05600 DUF773: Protein of un 32.0 5.9E+02 0.013 26.3 12.9 87 101-187 409-497 (507)
229 COG3937 Uncharacterized conser 31.9 1.7E+02 0.0036 24.5 6.0 17 108-124 62-78 (108)
230 PF12861 zf-Apc11: Anaphase-pr 31.6 29 0.00064 27.6 1.5 30 250-280 47-82 (85)
231 TIGR01562 FdhE formate dehydro 31.5 28 0.0006 33.7 1.7 40 239-278 186-233 (305)
232 PF08112 ATP-synt_E_2: ATP syn 31.5 2.1E+02 0.0046 21.0 6.9 47 91-145 7-53 (56)
233 KOG4643 Uncharacterized coiled 31.5 8.2E+02 0.018 28.1 12.7 79 91-169 369-455 (1195)
234 PF04124 Dor1: Dor1-like famil 31.4 4.8E+02 0.01 25.1 12.9 65 98-167 20-84 (338)
235 PF04859 DUF641: Plant protein 31.2 1.4E+02 0.0031 25.5 5.7 54 82-152 78-131 (131)
236 PF10481 CENP-F_N: Cenp-F N-te 31.2 5E+02 0.011 25.2 11.6 85 99-185 25-109 (307)
237 PF05983 Med7: MED7 protein; 31.1 3.2E+02 0.0068 23.9 8.1 48 102-152 114-161 (162)
238 PF07975 C1_4: TFIIH C1-like d 31.1 25 0.00054 25.4 1.0 17 260-276 31-50 (51)
239 PF04111 APG6: Autophagy prote 31.0 3.5E+02 0.0077 26.0 9.1 85 81-166 13-102 (314)
240 PF10571 UPF0547: Uncharacteri 30.8 28 0.00061 21.6 1.1 18 261-278 3-23 (26)
241 KOG2068 MOT2 transcription fac 30.5 30 0.00064 34.0 1.7 44 238-282 250-300 (327)
242 COG3159 Uncharacterized protei 30.5 1.9E+02 0.0041 26.9 6.8 31 115-156 35-65 (218)
243 PRK04023 DNA polymerase II lar 30.3 41 0.00089 37.7 2.8 50 236-286 625-680 (1121)
244 PRK06342 transcription elongat 30.1 1.1E+02 0.0023 26.8 5.0 23 131-153 59-81 (160)
245 KOG0245 Kinesin-like protein [ 30.0 64 0.0014 36.4 4.2 58 97-157 366-430 (1221)
246 KOG1029 Endocytic adaptor prot 30.0 5.5E+02 0.012 28.7 10.9 10 4-13 264-273 (1118)
247 PRK14157 heat shock protein Gr 29.7 1.7E+02 0.0036 27.4 6.4 20 97-116 82-101 (227)
248 PF10198 Ada3: Histone acetylt 29.4 3.5E+02 0.0077 22.9 8.7 58 125-186 36-93 (131)
249 COG3851 UhpB Signal transducti 29.3 2.4E+02 0.0053 28.7 7.7 18 170-187 345-362 (497)
250 PF06785 UPF0242: Uncharacteri 29.2 3.3E+02 0.0072 27.2 8.5 56 101-161 132-187 (401)
251 PF09744 Jnk-SapK_ap_N: JNK_SA 29.1 4E+02 0.0086 23.4 11.0 29 80-109 39-67 (158)
252 PF09731 Mitofilin: Mitochondr 28.8 6.5E+02 0.014 25.8 13.5 9 79-87 294-302 (582)
253 cd00730 rubredoxin Rubredoxin; 28.8 22 0.00047 25.5 0.3 10 237-246 34-43 (50)
254 PF12128 DUF3584: Protein of u 28.7 9.2E+02 0.02 27.5 15.8 28 136-163 678-705 (1201)
255 PF09789 DUF2353: Uncharacteri 28.5 5.7E+02 0.012 25.1 12.6 53 132-184 126-181 (319)
256 PHA02107 hypothetical protein 28.2 1.5E+02 0.0032 26.8 5.4 34 123-156 178-211 (216)
257 PRK05431 seryl-tRNA synthetase 28.2 6.2E+02 0.013 25.4 10.8 19 171-189 87-105 (425)
258 PRK14161 heat shock protein Gr 28.1 1.9E+02 0.0041 25.8 6.3 7 137-143 48-54 (178)
259 PF07800 DUF1644: Protein of u 28.0 29 0.00064 30.8 1.1 23 262-285 74-96 (162)
260 KOG3119 Basic region leucine z 28.0 3E+02 0.0065 26.0 7.9 21 146-166 218-238 (269)
261 PF04340 DUF484: Protein of un 27.8 2.3E+02 0.0049 25.5 6.9 31 140-177 51-81 (225)
262 PRK14148 heat shock protein Gr 27.7 2.4E+02 0.0051 25.7 6.9 23 92-115 41-63 (195)
263 PRK14164 heat shock protein Gr 27.6 3E+02 0.0066 25.5 7.7 17 99-115 77-93 (218)
264 TIGR02680 conserved hypothetic 27.6 1E+03 0.022 27.7 16.1 26 131-156 285-310 (1353)
265 PRK14159 heat shock protein Gr 27.5 2E+02 0.0043 25.7 6.2 19 94-112 25-43 (176)
266 COG2433 Uncharacterized conser 27.5 2.7E+02 0.0058 29.8 8.0 53 132-184 439-494 (652)
267 PRK13922 rod shape-determining 27.4 1.8E+02 0.0038 27.0 6.2 33 138-170 71-103 (276)
268 PHA01750 hypothetical protein 27.3 2.8E+02 0.0061 21.4 6.1 25 91-115 34-58 (75)
269 PRK00286 xseA exodeoxyribonucl 27.3 6.2E+02 0.013 25.1 15.7 32 113-144 311-342 (438)
270 PF04111 APG6: Autophagy prote 27.2 5.7E+02 0.012 24.6 12.6 16 243-258 189-204 (314)
271 PF11740 KfrA_N: Plasmid repli 27.0 3.2E+02 0.007 21.7 10.0 28 131-158 90-117 (120)
272 PRK14158 heat shock protein Gr 26.9 2.6E+02 0.0056 25.4 7.0 14 99-112 47-60 (194)
273 PHA02562 46 endonuclease subun 26.8 6.6E+02 0.014 25.2 13.3 31 129-159 358-388 (562)
274 PF04642 DUF601: Protein of un 26.8 3.3E+02 0.0072 26.2 7.8 32 140-171 256-287 (311)
275 PRK09413 IS2 repressor TnpA; R 26.7 1.6E+02 0.0035 24.0 5.3 34 138-171 73-106 (121)
276 PF10226 DUF2216: Uncharacteri 26.6 5E+02 0.011 23.8 11.0 26 137-162 109-134 (195)
277 PF12999 PRKCSH-like: Glucosid 26.6 3.6E+02 0.0079 24.2 7.7 19 140-158 157-175 (176)
278 PF08926 DUF1908: Domain of un 26.3 2.5E+02 0.0055 27.1 7.0 26 76-101 154-181 (282)
279 PF14645 Chibby: Chibby family 26.3 2.5E+02 0.0054 23.3 6.3 43 134-176 69-111 (116)
280 KOG2129 Uncharacterized conser 26.3 4.5E+02 0.0097 27.1 9.0 51 96-151 257-308 (552)
281 PF04380 BMFP: Membrane fusoge 26.1 2.7E+02 0.0058 21.4 6.1 56 87-150 23-78 (79)
282 PRK14162 heat shock protein Gr 25.8 2.7E+02 0.0058 25.3 6.9 24 90-114 38-61 (194)
283 PF05335 DUF745: Protein of un 25.6 5E+02 0.011 23.4 15.1 85 80-166 66-174 (188)
284 PRK04863 mukB cell division pr 25.6 1.2E+03 0.026 27.7 16.5 54 129-182 348-401 (1486)
285 KOG0006 E3 ubiquitin-protein l 25.6 36 0.00078 33.6 1.3 31 236-267 220-252 (446)
286 PF10174 Cast: RIM-binding pro 25.5 9.3E+02 0.02 26.5 15.5 87 98-186 321-407 (775)
287 PF15290 Syntaphilin: Golgi-lo 25.5 6.4E+02 0.014 24.6 10.6 67 86-157 84-170 (305)
288 PF00769 ERM: Ezrin/radixin/mo 25.5 5.5E+02 0.012 23.8 14.3 51 136-186 82-132 (246)
289 PF11793 FANCL_C: FANCL C-term 25.5 21 0.00046 26.8 -0.2 13 269-281 55-67 (70)
290 KOG3799 Rab3 effector RIM1 and 25.2 26 0.00057 30.5 0.3 17 261-277 92-115 (169)
291 KOG1734 Predicted RING-contain 25.1 31 0.00067 33.3 0.7 44 236-280 223-281 (328)
292 KOG0982 Centrosomal protein Nu 24.9 7.9E+02 0.017 25.5 12.5 28 131-158 292-319 (502)
293 PF05911 DUF869: Plant protein 24.9 9.5E+02 0.021 26.4 12.8 29 91-119 48-76 (769)
294 PRK01885 greB transcription el 24.9 2.6E+02 0.0056 24.2 6.4 12 141-152 52-63 (157)
295 KOG4643 Uncharacterized coiled 24.9 5.1E+02 0.011 29.6 9.8 63 113-176 172-238 (1195)
296 PF04423 Rad50_zn_hook: Rad50 24.7 26 0.00057 24.7 0.2 10 271-280 22-31 (54)
297 PRK14127 cell division protein 24.7 1.8E+02 0.0038 24.2 5.1 10 91-100 26-35 (109)
298 PF15070 GOLGA2L5: Putative go 24.6 8.7E+02 0.019 25.9 16.0 34 145-178 197-230 (617)
299 PF11505 DUF3216: Protein of u 24.6 3.5E+02 0.0077 22.0 6.5 57 91-153 21-85 (97)
300 TIGR01461 greB transcription e 24.4 2.5E+02 0.0054 24.3 6.2 20 136-155 45-64 (156)
301 PRK14154 heat shock protein Gr 24.3 2.5E+02 0.0054 25.8 6.4 22 93-115 54-75 (208)
302 PF03961 DUF342: Protein of un 24.3 5.4E+02 0.012 25.7 9.4 21 136-156 375-395 (451)
303 PRK14151 heat shock protein Gr 24.1 2.8E+02 0.006 24.7 6.6 28 138-165 29-56 (176)
304 KOG2412 Nuclear-export-signal 24.1 4.2E+02 0.0092 28.0 8.6 15 4-18 2-16 (591)
305 COG5481 Uncharacterized conser 24.1 3.2E+02 0.007 20.7 6.8 48 104-156 9-58 (67)
306 PF02403 Seryl_tRNA_N: Seryl-t 23.8 3.6E+02 0.0079 21.2 10.1 13 91-103 26-38 (108)
307 PRK14153 heat shock protein Gr 23.5 3.1E+02 0.0067 24.9 6.8 19 97-115 38-56 (194)
308 KOG0709 CREB/ATF family transc 23.3 1.8E+02 0.0039 30.0 5.7 37 147-183 276-312 (472)
309 PRK10698 phage shock protein P 23.2 5.8E+02 0.013 23.3 11.0 82 80-161 98-184 (222)
310 PRK14147 heat shock protein Gr 23.1 2.9E+02 0.0062 24.5 6.4 27 89-116 16-42 (172)
311 PF14169 YdjO: Cold-inducible 23.1 46 0.00099 24.9 1.1 17 269-285 39-55 (59)
312 PF06303 MatP: Organiser of ma 23.0 1.5E+02 0.0032 26.1 4.4 33 84-116 45-82 (148)
313 KOG4809 Rab6 GTPase-interactin 22.9 9.5E+02 0.021 25.7 12.7 94 90-183 330-454 (654)
314 KOG3161 Predicted E3 ubiquitin 22.7 26 0.00057 37.5 -0.2 38 238-277 12-54 (861)
315 PRK10803 tol-pal system protei 22.6 1.7E+02 0.0037 27.4 5.1 36 81-117 58-93 (263)
316 PRK14156 heat shock protein Gr 22.6 2.8E+02 0.006 24.9 6.2 29 137-165 35-63 (177)
317 KOG1150 Predicted molecular ch 22.5 6E+02 0.013 23.8 8.4 61 94-165 156-223 (250)
318 PF13600 DUF4140: N-terminal d 22.4 1.8E+02 0.0039 22.8 4.6 31 132-162 73-103 (104)
319 PF10752 DUF2533: Protein of u 22.4 4.1E+02 0.0088 21.2 7.0 55 78-148 3-60 (84)
320 PLN02436 cellulose synthase A 22.3 62 0.0014 36.5 2.5 45 236-280 35-89 (1094)
321 PF12777 MT: Microtubule-bindi 22.2 5.2E+02 0.011 24.9 8.6 22 137-158 236-257 (344)
322 KOG4005 Transcription factor X 22.2 7E+02 0.015 23.9 9.4 30 136-165 90-119 (292)
323 COG3809 Uncharacterized protei 22.1 35 0.00076 27.1 0.4 10 269-278 21-30 (88)
324 TIGR03185 DNA_S_dndD DNA sulfu 22.1 9.3E+02 0.02 25.3 14.6 23 135-157 448-470 (650)
325 TIGR03752 conj_TIGR03752 integ 22.0 5.4E+02 0.012 26.7 8.9 16 137-152 88-103 (472)
326 PF04340 DUF484: Protein of un 21.8 3.6E+02 0.0078 24.2 7.0 19 138-156 66-84 (225)
327 PF09403 FadA: Adhesion protei 21.7 5E+02 0.011 22.0 9.1 24 80-103 23-46 (126)
328 PF14712 Snapin_Pallidin: Snap 21.7 3.7E+02 0.0081 20.5 8.3 55 99-155 35-90 (92)
329 KOG2391 Vacuolar sorting prote 21.7 8.2E+02 0.018 24.5 10.2 32 134-165 240-271 (365)
330 PF10224 DUF2205: Predicted co 21.6 4E+02 0.0088 20.9 9.1 46 112-158 21-66 (80)
331 PF07295 DUF1451: Protein of u 21.5 5.3E+02 0.012 22.3 11.3 12 235-246 110-121 (146)
332 PF10186 Atg14: UV radiation r 21.5 6.1E+02 0.013 22.9 16.5 14 152-165 121-134 (302)
333 PF13248 zf-ribbon_3: zinc-rib 21.4 40 0.00088 20.5 0.5 19 260-278 4-25 (26)
334 PRK14145 heat shock protein Gr 21.4 3.2E+02 0.0069 24.9 6.5 25 91-116 45-69 (196)
335 PF13094 CENP-Q: CENP-Q, a CEN 21.3 5.1E+02 0.011 22.0 8.7 38 134-171 46-83 (160)
336 PF12325 TMF_TATA_bd: TATA ele 21.3 4.9E+02 0.011 21.8 13.9 95 76-184 15-109 (120)
337 PRK14141 heat shock protein Gr 21.3 2.9E+02 0.0064 25.4 6.3 19 97-115 36-54 (209)
338 KOG0994 Extracellular matrix g 21.3 1.4E+03 0.029 27.1 12.1 17 144-160 1690-1706(1758)
339 PRK14127 cell division protein 21.2 4.2E+02 0.0091 21.9 6.6 19 79-97 25-43 (109)
340 PF10211 Ax_dynein_light: Axon 21.2 5.9E+02 0.013 22.6 13.1 25 140-164 124-148 (189)
341 COG3416 Uncharacterized protei 21.1 2.8E+02 0.0061 25.9 6.0 57 102-158 14-77 (233)
342 COG2960 Uncharacterized protei 21.0 4.8E+02 0.01 21.6 7.8 16 140-155 70-85 (103)
343 PF09755 DUF2046: Uncharacteri 21.0 8E+02 0.017 24.1 13.0 103 83-185 29-149 (310)
344 PF07227 DUF1423: Protein of u 20.9 3.6E+02 0.0078 27.7 7.3 32 146-177 353-384 (446)
345 PRK14163 heat shock protein Gr 20.9 5.9E+02 0.013 23.6 8.2 19 97-115 45-63 (214)
346 TIGR02231 conserved hypothetic 20.8 8.9E+02 0.019 24.6 11.5 9 174-182 162-170 (525)
347 PF08599 Nbs1_C: DNA damage re 20.8 1E+02 0.0022 23.4 2.6 24 139-163 29-52 (65)
348 KOG4739 Uncharacterized protei 20.6 6.5E+02 0.014 23.6 8.5 22 76-97 68-91 (233)
349 KOG4466 Component of histone d 20.4 8E+02 0.017 23.8 10.7 18 144-161 117-134 (291)
350 PLN02320 seryl-tRNA synthetase 20.3 5.8E+02 0.013 26.6 8.8 20 170-189 150-169 (502)
351 TIGR02169 SMC_prok_A chromosom 20.1 1.2E+03 0.025 25.6 15.9 51 131-181 870-920 (1164)
No 1
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.1e-39 Score=288.89 Aligned_cols=189 Identities=49% Similarity=0.829 Sum_probs=159.4
Q ss_pred HHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023064 81 DIIFRLQQQQSEIDRYIAQHTEKVILELEEQRKRQSRMLISAIQEGVANKLKEKDEEIHRMRKLNWVLQERVKSLFVENQ 160 (288)
Q Consensus 81 ~l~~~l~~Q~~EiD~~i~~q~Erlr~~L~e~r~r~~r~ll~avE~~~~~rLReKe~Eie~a~r~n~eLEErlrql~~E~q 160 (288)
++++++++|..|||+|+..|.++|+..+.+.+++|++.++.++|..+.++||+|++||++++++|++|+++++++++|+|
T Consensus 15 ~~~~~~~~q~~~id~f~~~~~~~l~~~~~~~~~~~~~~~l~~~e~~~~~~l~~k~~ei~~~~~~~~~l~~~~~~~~~e~~ 94 (207)
T KOG1100|consen 15 DLASDIQRQSDEIDRFLKIQGEQLRRELEENRQRELRNLLKAVEEALVKKLREKDEEIERIGNLNWELEERVKSLYVEAQ 94 (207)
T ss_pred cceeecccccchhhHHHHhhHHHHHHHHHHhChHHHHHHHHHHHHHHHHHhhcchhHHHhcccccceehhhhhhhhhhHH
Confidence 78889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhHHHHHHHHHhHHHHHHhc----CCCCCCCCCCCCCcCCCCccccccccCCCCCCCcccccCcccccccCCC
Q 023064 161 IWRDLAQTNEATANTLRSNLEQVLAHV----GGEGDDCAGGGATLAAAAEDDAESSCGSSDFGRSTIAGEGAQDKAVGGG 236 (288)
Q Consensus 161 aWq~~A~~nEa~A~~Lra~L~q~l~q~----~~~~~~~eg~g~~~~~~~~dDAeS~c~~~~~~r~~l~~~e~~~~~~~~~ 236 (288)
.|+++|++||+++++|+.+|+|++.+. ....++..+.|.. +.||++|+.+.. +.+.. ...
T Consensus 95 ~w~~~a~~ne~~~~~l~~nl~q~~~~~~~~~~~~~~~~~~~g~~----~~~~~~s~~~~~----------~~~~~--~~~ 158 (207)
T KOG1100|consen 95 IWRDRAQTNEATVNSLRTNLDQVLAQCPASAPAEERGQKSCGDR----EADDGKSSYVDP----------SVDNF--KRM 158 (207)
T ss_pred HHHHHHHhChHHHHHHHHHHHHHHHhcccccCchhhhccccCcc----ccccccccccch----------hhhhh--hcc
Confidence 999999999999999999999999984 1111111122221 345555522211 11110 111
Q ss_pred ccccccccccccceEEeCCCCcccCcchhhhcCCCCccccccccceEEEee
Q 023064 237 RMLCRRCGEKESSVLLLPCRHLCLCTVCGSCLIGSCPVCNFVVDASLHVNL 287 (288)
Q Consensus 237 ~~~C~iC~~~~~~vlLlPCrHlclC~~C~~~l~~~CPvCr~~i~~~v~V~~ 287 (288)
. .|+.|++++++|+|+||+|+|+|..|..+ ...||+|+.+++.+++|||
T Consensus 159 ~-~Cr~C~~~~~~VlllPCrHl~lC~~C~~~-~~~CPiC~~~~~s~~~v~~ 207 (207)
T KOG1100|consen 159 R-SCRKCGEREATVLLLPCRHLCLCGICDES-LRICPICRSPKTSSVEVNF 207 (207)
T ss_pred c-cceecCcCCceEEeecccceEeccccccc-CccCCCCcChhhceeeccC
Confidence 2 29999999999999999999999999998 8999999999999999986
No 2
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=1.6e-12 Score=124.54 Aligned_cols=51 Identities=33% Similarity=0.886 Sum_probs=47.3
Q ss_pred ccccccccccccceEEeCCCCcccCcchhhhc---CCCCccccccccceEEEee
Q 023064 237 RMLCRRCGEKESSVLLLPCRHLCLCTVCGSCL---IGSCPVCNFVVDASLHVNL 287 (288)
Q Consensus 237 ~~~C~iC~~~~~~vlLlPCrHlclC~~C~~~l---~~~CPvCr~~i~~~v~V~~ 287 (288)
...|+||+...+++++|||||+|+|..|+..+ ...||+||.+|...+.|++
T Consensus 290 gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ll~i~~ 343 (349)
T KOG4265|consen 290 GKECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIEELLEIYV 343 (349)
T ss_pred CCeeEEEecCCcceEEecchhhehhHhHHHHHHHhhcCCCccccchHhhheecc
Confidence 45899999999999999999999999999997 5779999999999999875
No 3
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=99.00 E-value=1.3e-10 Score=81.95 Aligned_cols=44 Identities=39% Similarity=0.951 Sum_probs=39.0
Q ss_pred cccccccccccceEEeCCCCcccCcchhhhc---CCCCccccccccc
Q 023064 238 MLCRRCGEKESSVLLLPCRHLCLCTVCGSCL---IGSCPVCNFVVDA 281 (288)
Q Consensus 238 ~~C~iC~~~~~~vlLlPCrHlclC~~C~~~l---~~~CPvCr~~i~~ 281 (288)
..|.||+++..+++++||||+++|..|...+ ...||+||.+|+.
T Consensus 3 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~ 49 (50)
T PF13920_consen 3 EECPICFENPRDVVLLPCGHLCFCEECAERLLKRKKKCPICRQPIES 49 (50)
T ss_dssp SB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-SE
T ss_pred CCCccCCccCCceEEeCCCChHHHHHHhHHhcccCCCCCcCChhhcC
Confidence 3799999999999999999999999999995 5999999999875
No 4
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=3e-11 Score=88.05 Aligned_cols=51 Identities=31% Similarity=0.774 Sum_probs=46.3
Q ss_pred cccccccccccceEEeCCCCcccCcchhhhc----CCCCccccccccceEEEeeC
Q 023064 238 MLCRRCGEKESSVLLLPCRHLCLCTVCGSCL----IGSCPVCNFVVDASLHVNLS 288 (288)
Q Consensus 238 ~~C~iC~~~~~~vlLlPCrHlclC~~C~~~l----~~~CPvCr~~i~~~v~V~~S 288 (288)
-.|.||++.+.+.||.-|||+|+|.+|+..+ -..||+||.+|...|+.|-|
T Consensus 8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~dvIkTY~s 62 (62)
T KOG4172|consen 8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIKDVIKTYRS 62 (62)
T ss_pred cceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHHHHHHhhcC
Confidence 3799999999999999999999999999886 57899999999999887754
No 5
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=2.3e-10 Score=107.68 Aligned_cols=50 Identities=28% Similarity=0.743 Sum_probs=48.0
Q ss_pred ccccccccccccceEEeCCCCcccCcchhhhcCCCCccccccccceEEEee
Q 023064 237 RMLCRRCGEKESSVLLLPCRHLCLCTVCGSCLIGSCPVCNFVVDASLHVNL 287 (288)
Q Consensus 237 ~~~C~iC~~~~~~vlLlPCrHlclC~~C~~~l~~~CPvCr~~i~~~v~V~~ 287 (288)
...|+||++.+++.+||||||++.|..|+.. +..|||||..|...++||-
T Consensus 300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkr-m~eCPICRqyi~rvvrif~ 349 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFLECGHMVTCTKCGKR-MNECPICRQYIVRVVRIFR 349 (350)
T ss_pred HHHHHHHhcCCcceEEeecCcEEeehhhccc-cccCchHHHHHHHHHhhhc
Confidence 6799999999999999999999999999999 8999999999999999984
No 6
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=2.3e-09 Score=103.16 Aligned_cols=50 Identities=32% Similarity=0.774 Sum_probs=47.3
Q ss_pred cccccccccccceEEeCCCCcccCcchhhhcCCCCccccccccceEEEeeC
Q 023064 238 MLCRRCGEKESSVLLLPCRHLCLCTVCGSCLIGSCPVCNFVVDASLHVNLS 288 (288)
Q Consensus 238 ~~C~iC~~~~~~vlLlPCrHlclC~~C~~~l~~~CPvCr~~i~~~v~V~~S 288 (288)
..|+||.+.+.+++|+||||+|+|..|... ...||+||..|...+++|.|
T Consensus 306 ~lcVVcl~e~~~~~fvpcGh~ccct~cs~~-l~~CPvCR~rI~~~~k~y~~ 355 (355)
T KOG1571|consen 306 DLCVVCLDEPKSAVFVPCGHVCCCTLCSKH-LPQCPVCRQRIRLVRKRYRS 355 (355)
T ss_pred CceEEecCCccceeeecCCcEEEchHHHhh-CCCCchhHHHHHHHHHHhcC
Confidence 479999999999999999999999999999 88999999999999998865
No 7
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.77 E-value=6.7e-06 Score=80.80 Aligned_cols=52 Identities=35% Similarity=0.751 Sum_probs=45.3
Q ss_pred CCCccccccccccccceEEeCCCCcccCcchhhhc-----CCCCccccccccceEEEe
Q 023064 234 GGGRMLCRRCGEKESSVLLLPCRHLCLCTVCGSCL-----IGSCPVCNFVVDASLHVN 286 (288)
Q Consensus 234 ~~~~~~C~iC~~~~~~vlLlPCrHlclC~~C~~~l-----~~~CPvCr~~i~~~v~V~ 286 (288)
+...-.|+||-++..+|-+-||||+ +|..|-... ...||.||..|.+.-.|.
T Consensus 366 gsTFeLCKICaendKdvkIEPCGHL-lCt~CLa~WQ~sd~gq~CPFCRcEIKGte~vi 422 (563)
T KOG1785|consen 366 GSTFELCKICAENDKDVKIEPCGHL-LCTSCLAAWQDSDEGQTCPFCRCEIKGTEPVI 422 (563)
T ss_pred cchHHHHHHhhccCCCcccccccch-HHHHHHHhhcccCCCCCCCceeeEecccccee
Confidence 4556689999999999999999999 899998776 578999999999876654
No 8
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=97.44 E-value=5.4e-05 Score=50.63 Aligned_cols=35 Identities=31% Similarity=0.809 Sum_probs=29.2
Q ss_pred cccccccccce-EEeCCCCcccCcchhhhc---CCCCccc
Q 023064 240 CRRCGEKESSV-LLLPCRHLCLCTVCGSCL---IGSCPVC 275 (288)
Q Consensus 240 C~iC~~~~~~v-lLlPCrHlclC~~C~~~l---~~~CPvC 275 (288)
|.||++...+. +++||||. +|..|.... ...||+|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~-fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHS-FCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEE-EEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCc-hhHHHHHHHHHCcCCCcCC
Confidence 78999998888 79999999 899998876 6889987
No 9
>PHA02929 N1R/p28-like protein; Provisional
Probab=97.35 E-value=0.00015 Score=67.20 Aligned_cols=47 Identities=28% Similarity=0.578 Sum_probs=37.1
Q ss_pred cccccccccccc--------eEEeCCCCcccCcchhhhc---CCCCccccccccceEEE
Q 023064 238 MLCRRCGEKESS--------VLLLPCRHLCLCTVCGSCL---IGSCPVCNFVVDASLHV 285 (288)
Q Consensus 238 ~~C~iC~~~~~~--------vlLlPCrHlclC~~C~~~l---~~~CPvCr~~i~~~v~V 285 (288)
..|.||++.-.+ .++.||+|. .|..|-... ..+||+||..+...+..
T Consensus 175 ~eC~ICle~~~~~~~~~~~~~vl~~C~H~-FC~~CI~~Wl~~~~tCPlCR~~~~~v~~~ 232 (238)
T PHA02929 175 KECAICMEKVYDKEIKNMYFGILSNCNHV-FCIECIDIWKKEKNTCPVCRTPFISVIKS 232 (238)
T ss_pred CCCccCCcccccCccccccceecCCCCCc-ccHHHHHHHHhcCCCCCCCCCEeeEEeee
Confidence 379999986322 467789997 899998665 68999999998876654
No 10
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=97.33 E-value=9.8e-05 Score=50.77 Aligned_cols=37 Identities=35% Similarity=0.753 Sum_probs=30.4
Q ss_pred cccccccc---cceEEeCCCCcccCcchhhhc---CCCCccccc
Q 023064 240 CRRCGEKE---SSVLLLPCRHLCLCTVCGSCL---IGSCPVCNF 277 (288)
Q Consensus 240 C~iC~~~~---~~vlLlPCrHlclC~~C~~~l---~~~CPvCr~ 277 (288)
|.+|+..- ...+|++|+|. +|..|...+ ...||+|+.
T Consensus 2 C~~C~~~~~~~~~~~l~~CgH~-~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 2 CNICFEKYSEERRPRLTSCGHI-FCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CcCcCccccCCCCeEEcccCCH-HHHHHHHhhcCCCCCCcCCCC
Confidence 77787765 56899999999 899999983 249999984
No 11
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.27 E-value=0.00014 Score=66.92 Aligned_cols=48 Identities=27% Similarity=0.528 Sum_probs=41.0
Q ss_pred CccccccccccccceEEeCCCCcccCcchhhhc------CCCCccccccccceEE
Q 023064 236 GRMLCRRCGEKESSVLLLPCRHLCLCTVCGSCL------IGSCPVCNFVVDASLH 284 (288)
Q Consensus 236 ~~~~C~iC~~~~~~vlLlPCrHlclC~~C~~~l------~~~CPvCr~~i~~~v~ 284 (288)
....|-||++...+-|+-+|||| .|..|.-.+ ...||||++.|+..-.
T Consensus 46 ~~FdCNICLd~akdPVvTlCGHL-FCWpClyqWl~~~~~~~~cPVCK~~Vs~~~v 99 (230)
T KOG0823|consen 46 GFFDCNICLDLAKDPVVTLCGHL-FCWPCLYQWLQTRPNSKECPVCKAEVSIDTV 99 (230)
T ss_pred CceeeeeeccccCCCEEeecccc-eehHHHHHHHhhcCCCeeCCccccccccceE
Confidence 34579999999999999999999 899998765 6788999998876443
No 12
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=97.22 E-value=0.00012 Score=49.92 Aligned_cols=37 Identities=38% Similarity=0.782 Sum_probs=30.7
Q ss_pred cccccccc---ccceEEeCCCCcccCcchhhhc---CCCCcccc
Q 023064 239 LCRRCGEK---ESSVLLLPCRHLCLCTVCGSCL---IGSCPVCN 276 (288)
Q Consensus 239 ~C~iC~~~---~~~vlLlPCrHlclC~~C~~~l---~~~CPvCr 276 (288)
.|.||++. ...++.+||+|. +|..|...+ ...||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~-fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHV-FHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEE-EEHHHHHHHHHHSSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCe-eCHHHHHHHHHhCCcCCccC
Confidence 58899875 468889999998 899998876 78999997
No 13
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.20 E-value=0.0023 Score=67.12 Aligned_cols=46 Identities=24% Similarity=0.619 Sum_probs=40.3
Q ss_pred CCccccccccccccceEEeCCCCcccCcchhhhc----CCCCccccccccc
Q 023064 235 GGRMLCRRCGEKESSVLLLPCRHLCLCTVCGSCL----IGSCPVCNFVVDA 281 (288)
Q Consensus 235 ~~~~~C~iC~~~~~~vlLlPCrHlclC~~C~~~l----~~~CPvCr~~i~~ 281 (288)
+....|.+|.+++.++++.-|+|+ +|..|-... ...||.|...+..
T Consensus 641 K~~LkCs~Cn~R~Kd~vI~kC~H~-FC~~Cvq~r~etRqRKCP~Cn~aFga 690 (698)
T KOG0978|consen 641 KELLKCSVCNTRWKDAVITKCGHV-FCEECVQTRYETRQRKCPKCNAAFGA 690 (698)
T ss_pred HhceeCCCccCchhhHHHHhcchH-HHHHHHHHHHHHhcCCCCCCCCCCCc
Confidence 455689999999999999999999 899997765 7999999998753
No 14
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=97.13 E-value=0.00024 Score=44.88 Aligned_cols=35 Identities=34% Similarity=0.903 Sum_probs=30.4
Q ss_pred cccccccccceEEeCCCCcccCcchhhhc----CCCCccc
Q 023064 240 CRRCGEKESSVLLLPCRHLCLCTVCGSCL----IGSCPVC 275 (288)
Q Consensus 240 C~iC~~~~~~vlLlPCrHlclC~~C~~~l----~~~CPvC 275 (288)
|.||++.....+++||+|. +|..|...+ ...||+|
T Consensus 1 C~iC~~~~~~~~~~~C~H~-~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHT-FCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCCh-HHHHHHHHHHHhCcCCCCCC
Confidence 7899999999999999999 899998753 4679987
No 15
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=97.09 E-value=0.00039 Score=62.63 Aligned_cols=44 Identities=27% Similarity=0.573 Sum_probs=37.4
Q ss_pred ccccccccccccceEEeCCCCcccCcchhhhc-------------------CCCCccccccccc
Q 023064 237 RMLCRRCGEKESSVLLLPCRHLCLCTVCGSCL-------------------IGSCPVCNFVVDA 281 (288)
Q Consensus 237 ~~~C~iC~~~~~~vlLlPCrHlclC~~C~~~l-------------------~~~CPvCr~~i~~ 281 (288)
...|.||++...+.++.||+|+ .|..|...+ ...||+||..++.
T Consensus 18 ~~~CpICld~~~dPVvT~CGH~-FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~ 80 (193)
T PLN03208 18 DFDCNICLDQVRDPVVTLCGHL-FCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSE 80 (193)
T ss_pred ccCCccCCCcCCCcEEcCCCch-hHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCCh
Confidence 3579999999999999999997 899998542 2479999999865
No 16
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=97.08 E-value=0.00036 Score=45.70 Aligned_cols=40 Identities=35% Similarity=0.841 Sum_probs=30.9
Q ss_pred ccccccccc-cceEEeCCCCcccCcchhhhc----CCCCccccccc
Q 023064 239 LCRRCGEKE-SSVLLLPCRHLCLCTVCGSCL----IGSCPVCNFVV 279 (288)
Q Consensus 239 ~C~iC~~~~-~~vlLlPCrHlclC~~C~~~l----~~~CPvCr~~i 279 (288)
.|.+|++.. ..+.+.||+|. +|..|.... ...||+|+..+
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~-~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHV-FCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCceEecCCCCh-hcHHHHHHHHHhCcCCCCCCCCcC
Confidence 488999987 45555569999 899998754 45799998753
No 17
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.04 E-value=0.00026 Score=67.04 Aligned_cols=50 Identities=26% Similarity=0.519 Sum_probs=40.8
Q ss_pred CccccccccccccceEEeCCCCcccCcchhhhc---CCCCccccccccceEEEe
Q 023064 236 GRMLCRRCGEKESSVLLLPCRHLCLCTVCGSCL---IGSCPVCNFVVDASLHVN 286 (288)
Q Consensus 236 ~~~~C~iC~~~~~~vlLlPCrHlclC~~C~~~l---~~~CPvCr~~i~~~v~V~ 286 (288)
..+.|.+|++...+--..||||+ +|..|-... ...||+||.+..-.-.|.
T Consensus 238 a~~kC~LCLe~~~~pSaTpCGHi-FCWsCI~~w~~ek~eCPlCR~~~~pskvi~ 290 (293)
T KOG0317|consen 238 ATRKCSLCLENRSNPSATPCGHI-FCWSCILEWCSEKAECPLCREKFQPSKVIC 290 (293)
T ss_pred CCCceEEEecCCCCCCcCcCcch-HHHHHHHHHHccccCCCcccccCCCcceee
Confidence 34689999999999999999999 788886655 577999999877655444
No 18
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=96.80 E-value=0.00056 Score=45.64 Aligned_cols=35 Identities=37% Similarity=0.822 Sum_probs=30.2
Q ss_pred cccccccccceE-EeCCCCcccCcchhhhc-----CCCCccc
Q 023064 240 CRRCGEKESSVL-LLPCRHLCLCTVCGSCL-----IGSCPVC 275 (288)
Q Consensus 240 C~iC~~~~~~vl-LlPCrHlclC~~C~~~l-----~~~CPvC 275 (288)
|.||.+.....+ ++||+|. +|..|...+ ...||+|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~-fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHS-FCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEE-EEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCc-chHHHHHHHHHhcCCccCCcC
Confidence 789999888888 9999999 899998775 5679887
No 19
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=96.72 E-value=0.00073 Score=49.45 Aligned_cols=43 Identities=30% Similarity=0.677 Sum_probs=36.8
Q ss_pred cccccccccccceEEeCCCCcccCcchhhhc-CCCCccccccccc
Q 023064 238 MLCRRCGEKESSVLLLPCRHLCLCTVCGSCL-IGSCPVCNFVVDA 281 (288)
Q Consensus 238 ~~C~iC~~~~~~vlLlPCrHlclC~~C~~~l-~~~CPvCr~~i~~ 281 (288)
..|..|......-+++||+|+ +|..|...- ...||+|..++..
T Consensus 8 ~~~~~~~~~~~~~~~~pCgH~-I~~~~f~~~rYngCPfC~~~~~~ 51 (55)
T PF14447_consen 8 QPCVFCGFVGTKGTVLPCGHL-ICDNCFPGERYNGCPFCGTPFEF 51 (55)
T ss_pred eeEEEccccccccccccccce-eeccccChhhccCCCCCCCcccC
Confidence 469999999888999999999 799997654 7999999988753
No 20
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.42 E-value=0.0011 Score=59.22 Aligned_cols=49 Identities=22% Similarity=0.526 Sum_probs=37.9
Q ss_pred cccccccccccceE--EeCCCCcccCcchhhhc---CCCCcccccccc--ceEEEee
Q 023064 238 MLCRRCGEKESSVL--LLPCRHLCLCTVCGSCL---IGSCPVCNFVVD--ASLHVNL 287 (288)
Q Consensus 238 ~~C~iC~~~~~~vl--LlPCrHlclC~~C~~~l---~~~CPvCr~~i~--~~v~V~~ 287 (288)
..|.||++.-.--+ ---|||+ +|..|.... ...||+|+..|+ .+..|||
T Consensus 132 ~~CPiCl~~~sek~~vsTkCGHv-FC~~Cik~alk~~~~CP~C~kkIt~k~~~rI~L 187 (187)
T KOG0320|consen 132 YKCPICLDSVSEKVPVSTKCGHV-FCSQCIKDALKNTNKCPTCRKKITHKQFHRIYL 187 (187)
T ss_pred cCCCceecchhhccccccccchh-HHHHHHHHHHHhCCCCCCcccccchhhheeccC
Confidence 57999998755444 2589999 899999886 799999996665 4566654
No 21
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.34 E-value=0.0017 Score=64.34 Aligned_cols=45 Identities=22% Similarity=0.567 Sum_probs=38.2
Q ss_pred CccccccccccccceEEeCCCCcccCcchhhhc---CCCCccccccccc
Q 023064 236 GRMLCRRCGEKESSVLLLPCRHLCLCTVCGSCL---IGSCPVCNFVVDA 281 (288)
Q Consensus 236 ~~~~C~iC~~~~~~vlLlPCrHlclC~~C~~~l---~~~CPvCr~~i~~ 281 (288)
....|.||.+.-..-++.||+|. +|..|.... ...||+|+..+..
T Consensus 25 ~~l~C~IC~d~~~~PvitpCgH~-FCs~CI~~~l~~~~~CP~Cr~~~~~ 72 (397)
T TIGR00599 25 TSLRCHICKDFFDVPVLTSCSHT-FCSLCIRRCLSNQPKCPLCRAEDQE 72 (397)
T ss_pred cccCCCcCchhhhCccCCCCCCc-hhHHHHHHHHhCCCCCCCCCCcccc
Confidence 45689999999888889999999 799998754 4579999998764
No 22
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.11 E-value=0.0031 Score=63.89 Aligned_cols=44 Identities=30% Similarity=0.607 Sum_probs=39.0
Q ss_pred ccccccccccccceEEeCCCCcccCcchhhhc--------CCCCccccccccc
Q 023064 237 RMLCRRCGEKESSVLLLPCRHLCLCTVCGSCL--------IGSCPVCNFVVDA 281 (288)
Q Consensus 237 ~~~C~iC~~~~~~vlLlPCrHlclC~~C~~~l--------~~~CPvCr~~i~~ 281 (288)
...|.||++.+...++.-|||. .|-.|--.. ...||+|+..|+-
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHi-FC~~CiLqy~~~s~~~~~~~CPiC~s~I~~ 237 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHI-FCGPCILQYWNYSAIKGPCSCPICRSTITL 237 (513)
T ss_pred CCcCCcccCCCCcccccccCce-eeHHHHHHHHhhhcccCCccCCchhhhccc
Confidence 6789999999999999999999 799996543 6899999999876
No 23
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.01 E-value=0.0024 Score=59.96 Aligned_cols=44 Identities=30% Similarity=0.572 Sum_probs=37.1
Q ss_pred CccccccccccccceEEeCCCCcccCcchhhh-c----CCCCcccccccc
Q 023064 236 GRMLCRRCGEKESSVLLLPCRHLCLCTVCGSC-L----IGSCPVCNFVVD 280 (288)
Q Consensus 236 ~~~~C~iC~~~~~~vlLlPCrHlclC~~C~~~-l----~~~CPvCr~~i~ 280 (288)
..+.|.+|.+.+-+-...||||+ +|-.|--. + ...||+||+...
T Consensus 214 ~d~kC~lC~e~~~~ps~t~CgHl-FC~~Cl~~~~t~~k~~~CplCRak~~ 262 (271)
T COG5574 214 ADYKCFLCLEEPEVPSCTPCGHL-FCLSCLLISWTKKKYEFCPLCRAKVY 262 (271)
T ss_pred cccceeeeecccCCcccccccch-hhHHHHHHHHHhhccccCchhhhhcc
Confidence 45689999999999999999999 78888655 2 678999998753
No 24
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=95.95 E-value=0.0041 Score=42.68 Aligned_cols=35 Identities=37% Similarity=0.753 Sum_probs=26.4
Q ss_pred cccccccccceEEeCCCCcccCcchhhhc-----C--CCCccc
Q 023064 240 CRRCGEKESSVLLLPCRHLCLCTVCGSCL-----I--GSCPVC 275 (288)
Q Consensus 240 C~iC~~~~~~vlLlPCrHlclC~~C~~~l-----~--~~CPvC 275 (288)
|.||.+--.+=+.++|||. +|..|...+ . -.||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~-FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHS-FCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSE-EEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCH-HHHHHHHHHHHccCCcCCCCcCC
Confidence 7899999999999999999 899998876 1 368887
No 25
>PHA02926 zinc finger-like protein; Provisional
Probab=95.95 E-value=0.0024 Score=58.92 Aligned_cols=46 Identities=26% Similarity=0.533 Sum_probs=34.8
Q ss_pred Cccccccccccc---------cceEEeCCCCcccCcchhhhc---------CCCCccccccccce
Q 023064 236 GRMLCRRCGEKE---------SSVLLLPCRHLCLCTVCGSCL---------IGSCPVCNFVVDAS 282 (288)
Q Consensus 236 ~~~~C~iC~~~~---------~~vlLlPCrHlclC~~C~~~l---------~~~CPvCr~~i~~~ 282 (288)
....|.||++.- .--+|.||+|. +|..|-... ...||+||..+...
T Consensus 169 kE~eCgICmE~I~eK~~~~eRrFGIL~~CnHs-FCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I 232 (242)
T PHA02926 169 KEKECGICYEVVYSKRLENDRYFGLLDSCNHI-FCITCINIWHRTRRETGASDNCPICRTRFRNI 232 (242)
T ss_pred CCCCCccCccccccccccccccccccCCCCch-HHHHHHHHHHHhccccCcCCcCCCCcceeeee
Confidence 345899999862 23588899999 899997765 13499999987643
No 26
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.73 E-value=0.003 Score=55.30 Aligned_cols=40 Identities=38% Similarity=0.734 Sum_probs=34.4
Q ss_pred ccccccccccccceEEeCCCCcccCcchhhhcC---CCCccccc
Q 023064 237 RMLCRRCGEKESSVLLLPCRHLCLCTVCGSCLI---GSCPVCNF 277 (288)
Q Consensus 237 ~~~C~iC~~~~~~vlLlPCrHlclC~~C~~~l~---~~CPvCr~ 277 (288)
...|.||++.-..-.++||+|. +|..|...+. -.||.||.
T Consensus 13 ~~~C~iC~~~~~~p~~l~C~H~-~c~~C~~~~~~~~~~Cp~cr~ 55 (386)
T KOG2177|consen 13 ELTCPICLEYFREPVLLPCGHN-FCRACLTRSWEGPLSCPVCRP 55 (386)
T ss_pred cccChhhHHHhhcCccccccch-HhHHHHHHhcCCCcCCcccCC
Confidence 4579999998777799999999 8999998853 69999993
No 27
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=95.71 E-value=0.0079 Score=43.21 Aligned_cols=43 Identities=19% Similarity=0.166 Sum_probs=36.0
Q ss_pred cccccccccccceEEeCCCCcccCcchhhhc---CCCCccccccccc
Q 023064 238 MLCRRCGEKESSVLLLPCRHLCLCTVCGSCL---IGSCPVCNFVVDA 281 (288)
Q Consensus 238 ~~C~iC~~~~~~vlLlPCrHlclC~~C~~~l---~~~CPvCr~~i~~ 281 (288)
..|.+|++--.+=++.||||. .|..|.... ...||+|+.+++.
T Consensus 2 ~~Cpi~~~~~~~Pv~~~~G~v-~~~~~i~~~~~~~~~cP~~~~~~~~ 47 (63)
T smart00504 2 FLCPISLEVMKDPVILPSGQT-YERRAIEKWLLSHGTDPVTGQPLTH 47 (63)
T ss_pred cCCcCCCCcCCCCEECCCCCE-EeHHHHHHHHHHCCCCCCCcCCCCh
Confidence 369999998888899999988 799998765 5789999998743
No 28
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=95.33 E-value=0.0064 Score=42.24 Aligned_cols=27 Identities=41% Similarity=0.912 Sum_probs=17.0
Q ss_pred cccccccccc----eEEeCCCCcccCcchhhhc
Q 023064 240 CRRCGEKESS----VLLLPCRHLCLCTVCGSCL 268 (288)
Q Consensus 240 C~iC~~~~~~----vlLlPCrHlclC~~C~~~l 268 (288)
|.||.+ ..+ -++|||||. +|..|...+
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~-~c~~cl~~l 31 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHV-FCKDCLQKL 31 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-E-EEHHHHHHH
T ss_pred CCcccc-ccCCCCCCEEEeCccH-HHHHHHHHH
Confidence 788888 666 577899999 899998875
No 29
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.11 E-value=0.012 Score=57.61 Aligned_cols=45 Identities=29% Similarity=0.728 Sum_probs=39.3
Q ss_pred CccccccccccccceEEeCCCCcccCcchhhhc-----CCCCccccccccc
Q 023064 236 GRMLCRRCGEKESSVLLLPCRHLCLCTVCGSCL-----IGSCPVCNFVVDA 281 (288)
Q Consensus 236 ~~~~C~iC~~~~~~vlLlPCrHlclC~~C~~~l-----~~~CPvCr~~i~~ 281 (288)
+.+.|.||-+.-.-+.++||+|. +|-.|+-++ ...||+||..-..
T Consensus 60 en~~C~ICA~~~TYs~~~PC~H~-~CH~Ca~RlRALY~~K~C~~CrTE~e~ 109 (493)
T COG5236 60 ENMNCQICAGSTTYSARYPCGHQ-ICHACAVRLRALYMQKGCPLCRTETEA 109 (493)
T ss_pred ccceeEEecCCceEEEeccCCch-HHHHHHHHHHHHHhccCCCccccccce
Confidence 45689999999999999999999 899999886 6899999987443
No 30
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.98 E-value=0.014 Score=56.08 Aligned_cols=42 Identities=26% Similarity=0.646 Sum_probs=34.0
Q ss_pred ccccccccc---ccceEEeCCCCcccCcchhhhc----CCCCcccccccc
Q 023064 238 MLCRRCGEK---ESSVLLLPCRHLCLCTVCGSCL----IGSCPVCNFVVD 280 (288)
Q Consensus 238 ~~C~iC~~~---~~~vlLlPCrHlclC~~C~~~l----~~~CPvCr~~i~ 280 (288)
..|.||++. .-.++++||.|. .=..|-.+. ...||+||.++.
T Consensus 324 veCaICms~fiK~d~~~vlPC~H~-FH~~Cv~kW~~~y~~~CPvCrt~iP 372 (374)
T COG5540 324 VECAICMSNFIKNDRLRVLPCDHR-FHVGCVDKWLLGYSNKCPVCRTAIP 372 (374)
T ss_pred ceEEEEhhhhcccceEEEeccCce-echhHHHHHHhhhcccCCccCCCCC
Confidence 589999983 334788999999 667887775 689999999875
No 31
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.76 E-value=0.011 Score=57.81 Aligned_cols=45 Identities=24% Similarity=0.464 Sum_probs=37.3
Q ss_pred CccccccccccccceEEeCCCCcccCcchhhhc---CCCCccccccccc
Q 023064 236 GRMLCRRCGEKESSVLLLPCRHLCLCTVCGSCL---IGSCPVCNFVVDA 281 (288)
Q Consensus 236 ~~~~C~iC~~~~~~vlLlPCrHlclC~~C~~~l---~~~CPvCr~~i~~ 281 (288)
....|+||+..+.+.+|-||+|. .|..|-..- .+.|-.|+..+..
T Consensus 421 Ed~lCpICyA~pi~Avf~PC~H~-SC~~CI~qHlmN~k~CFfCktTv~~ 468 (489)
T KOG4692|consen 421 EDNLCPICYAGPINAVFAPCSHR-SCYGCITQHLMNCKRCFFCKTTVID 468 (489)
T ss_pred ccccCcceecccchhhccCCCCc-hHHHHHHHHHhcCCeeeEecceeee
Confidence 45689999999999999999999 699998764 5777777776553
No 32
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=94.23 E-value=0.019 Score=55.00 Aligned_cols=42 Identities=29% Similarity=0.532 Sum_probs=37.1
Q ss_pred cccccccccccceEEeCCCCcccCcchhhhc---CCCCcccccccc
Q 023064 238 MLCRRCGEKESSVLLLPCRHLCLCTVCGSCL---IGSCPVCNFVVD 280 (288)
Q Consensus 238 ~~C~iC~~~~~~vlLlPCrHlclC~~C~~~l---~~~CPvCr~~i~ 280 (288)
..|.||...-.--++-||||. +|.-|.... ...||+||....
T Consensus 26 lrC~IC~~~i~ip~~TtCgHt-FCslCIR~hL~~qp~CP~Cr~~~~ 70 (391)
T COG5432 26 LRCRICDCRISIPCETTCGHT-FCSLCIRRHLGTQPFCPVCREDPC 70 (391)
T ss_pred HHhhhhhheeecceecccccc-hhHHHHHHHhcCCCCCccccccHH
Confidence 469999999999999999999 899998775 789999998754
No 33
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=93.27 E-value=0.025 Score=55.23 Aligned_cols=45 Identities=29% Similarity=0.662 Sum_probs=39.1
Q ss_pred ccccccccccccceEEeCCCCcccCcchhhhc---CCCCccccccccce
Q 023064 237 RMLCRRCGEKESSVLLLPCRHLCLCTVCGSCL---IGSCPVCNFVVDAS 282 (288)
Q Consensus 237 ~~~C~iC~~~~~~vlLlPCrHlclC~~C~~~l---~~~CPvCr~~i~~~ 282 (288)
...|-||++=-.--++.||+|. +|.-|.... -..||.|+.+++.+
T Consensus 23 lLRC~IC~eyf~ip~itpCsHt-fCSlCIR~~L~~~p~CP~C~~~~~Es 70 (442)
T KOG0287|consen 23 LLRCGICFEYFNIPMITPCSHT-FCSLCIRKFLSYKPQCPTCCVTVTES 70 (442)
T ss_pred HHHHhHHHHHhcCceeccccch-HHHHHHHHHhccCCCCCceecccchh
Confidence 4579999999999999999999 899998775 68999999987754
No 34
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.21 E-value=0.028 Score=57.54 Aligned_cols=43 Identities=33% Similarity=0.620 Sum_probs=36.9
Q ss_pred ccccccccccccc-----eEEeCCCCcccCcchhhhc---CCCCcccccccc
Q 023064 237 RMLCRRCGEKESS-----VLLLPCRHLCLCTVCGSCL---IGSCPVCNFVVD 280 (288)
Q Consensus 237 ~~~C~iC~~~~~~-----vlLlPCrHlclC~~C~~~l---~~~CPvCr~~i~ 280 (288)
.-.|.||.+.-.. ...+||+|. .+..|-... ..+||+||..+.
T Consensus 291 ~~~C~IC~e~l~~~~~~~~~rL~C~Hi-fh~~CL~~W~er~qtCP~CR~~~~ 341 (543)
T KOG0802|consen 291 DELCIICLEELHSGHNITPKRLPCGHI-FHDSCLRSWFERQQTCPTCRTVLY 341 (543)
T ss_pred CCeeeeechhhccccccccceeecccc-hHHHHHHHHHHHhCcCCcchhhhh
Confidence 3489999998887 799999999 899998876 799999999443
No 35
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=92.99 E-value=0.054 Score=41.23 Aligned_cols=28 Identities=29% Similarity=0.733 Sum_probs=21.1
Q ss_pred cceEEeCCCCcccCcchhhhc---CCCCcccc
Q 023064 248 SSVLLLPCRHLCLCTVCGSCL---IGSCPVCN 276 (288)
Q Consensus 248 ~~vlLlPCrHlclC~~C~~~l---~~~CPvCr 276 (288)
..+++.+|+|. +-..|-... ..+||+||
T Consensus 43 ~~i~~~~C~H~-FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 43 CPIVWGPCGHI-FHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp S-EEEETTSEE-EEHHHHHHHHTTSSB-TTSS
T ss_pred cceEecccCCC-EEHHHHHHHHhcCCcCCCCC
Confidence 55677899999 788887654 68999997
No 36
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=92.93 E-value=0.047 Score=53.97 Aligned_cols=45 Identities=27% Similarity=0.558 Sum_probs=31.3
Q ss_pred CCCccccccccccc-------------cceEEeCCCCcccCcchhhhc---CCCCccccccc
Q 023064 234 GGGRMLCRRCGEKE-------------SSVLLLPCRHLCLCTVCGSCL---IGSCPVCNFVV 279 (288)
Q Consensus 234 ~~~~~~C~iC~~~~-------------~~vlLlPCrHlclC~~C~~~l---~~~CPvCr~~i 279 (288)
+.+...|.||++.- +.--=+||||. +=-.|-+.. ..+||+||.++
T Consensus 284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHi-lHl~CLknW~ERqQTCPICr~p~ 344 (491)
T COG5243 284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHI-LHLHCLKNWLERQQTCPICRRPV 344 (491)
T ss_pred cCCCCeEEEecccccCCCCccCcccccCCcccccccce-eeHHHHHHHHHhccCCCcccCcc
Confidence 44677999999961 11234799997 444554443 78999999983
No 37
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.99 E-value=0.098 Score=51.20 Aligned_cols=43 Identities=28% Similarity=0.563 Sum_probs=31.3
Q ss_pred cccccccc---ccceEEeCCCCcccCcchhhhc----CCCCccccccccce
Q 023064 239 LCRRCGEK---ESSVLLLPCRHLCLCTVCGSCL----IGSCPVCNFVVDAS 282 (288)
Q Consensus 239 ~C~iC~~~---~~~vlLlPCrHlclC~~C~~~l----~~~CPvCr~~i~~~ 282 (288)
.|.||++. .-.+.+|||.|--- ..|-... -..||+|+..+...
T Consensus 231 ~CaIClEdY~~GdklRiLPC~H~FH-~~CIDpWL~~~r~~CPvCK~di~~~ 280 (348)
T KOG4628|consen 231 TCAICLEDYEKGDKLRILPCSHKFH-VNCIDPWLTQTRTFCPVCKRDIRTD 280 (348)
T ss_pred eEEEeecccccCCeeeEecCCCchh-hccchhhHhhcCccCCCCCCcCCCC
Confidence 79999873 45567799999943 3565554 35699999987654
No 38
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.63 E-value=0.13 Score=51.23 Aligned_cols=46 Identities=24% Similarity=0.438 Sum_probs=35.0
Q ss_pred CCCccccccccccc---cceEEeCCCCcccCcchhhhc-----------CCCCcccccccc
Q 023064 234 GGGRMLCRRCGEKE---SSVLLLPCRHLCLCTVCGSCL-----------IGSCPVCNFVVD 280 (288)
Q Consensus 234 ~~~~~~C~iC~~~~---~~vlLlPCrHlclC~~C~~~l-----------~~~CPvCr~~i~ 280 (288)
......|.||++.. .++.++||+|+ +|..|.... ...||-|..+-.
T Consensus 181 ~~slf~C~ICf~e~~G~~c~~~lpC~Hv-~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~~~ 240 (445)
T KOG1814|consen 181 VNSLFDCCICFEEQMGQHCFKFLPCSHV-FCKSCLKDYFTIQIQEGQVSCLKCPDPKCGSV 240 (445)
T ss_pred HhhcccceeeehhhcCcceeeecccchH-HHHHHHHHHHHHhhhcceeeeecCCCCCCccc
Confidence 34556899999965 45999999999 899997664 467887765543
No 39
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.35 E-value=0.18 Score=49.38 Aligned_cols=48 Identities=23% Similarity=0.431 Sum_probs=38.1
Q ss_pred CCccccccccccccceE-----E---eCCCCcccCcchhhhc----------CCCCccccccccceE
Q 023064 235 GGRMLCRRCGEKESSVL-----L---LPCRHLCLCTVCGSCL----------IGSCPVCNFVVDASL 283 (288)
Q Consensus 235 ~~~~~C~iC~~~~~~vl-----L---lPCrHlclC~~C~~~l----------~~~CPvCr~~i~~~v 283 (288)
.....|-||++.-...+ | .+|.|. +|..|.... ...||.||......+
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~-~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v~ 224 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHS-FCLNCIRKWRQATQFESKTSKSCPFCRVPSSFVN 224 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchh-hhhcHhHhhhhhhccccccccCCCcccCcccccc
Confidence 34568999999877777 5 779999 899997665 378999998876543
No 40
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=88.44 E-value=19 Score=32.55 Aligned_cols=93 Identities=24% Similarity=0.286 Sum_probs=60.2
Q ss_pred HHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHH--------HH
Q 023064 84 FRLQQQQSEIDRYIAQHTEKVILELEEQRKRQSRMLISAIQEGVANKLKEKDEEIHRMRKLNWVLQERVK--------SL 155 (288)
Q Consensus 84 ~~l~~Q~~EiD~~i~~q~Erlr~~L~e~r~r~~r~ll~avE~~~~~rLReKe~Eie~a~r~n~eLEErlr--------ql 155 (288)
..++....++.++|..|.+-+|.-=+..|+-+- -+..+.++||+++.||.+..-.+..|+.-+. .+
T Consensus 50 ~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~------~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL 123 (194)
T PF15619_consen 50 QKYEDTEAELPQLLQRHNEEVRVLRERLRKSQE------QERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREEL 123 (194)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHH
Confidence 345667788888899999998876666664332 3455668899999999988777666554222 23
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHhHHH
Q 023064 156 FVENQIWRDLAQTNEATANTLRSNLEQ 182 (288)
Q Consensus 156 ~~E~qaWq~~A~~nEa~A~~Lra~L~q 182 (288)
...-..-......++..+..|..+++-
T Consensus 124 ~~kL~~~~~~l~~~~~ki~~Lek~leL 150 (194)
T PF15619_consen 124 QRKLSQLEQKLQEKEKKIQELEKQLEL 150 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444555566666666665543
No 41
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=87.54 E-value=0.44 Score=46.32 Aligned_cols=51 Identities=10% Similarity=-0.032 Sum_probs=43.9
Q ss_pred CccccccccccccceEEeCCCCcccCcchhhhc-CCCCccccccccceEEEe
Q 023064 236 GRMLCRRCGEKESSVLLLPCRHLCLCTVCGSCL-IGSCPVCNFVVDASLHVN 286 (288)
Q Consensus 236 ~~~~C~iC~~~~~~vlLlPCrHlclC~~C~~~l-~~~CPvCr~~i~~~v~V~ 286 (288)
..+.|-+|..+-.+.++.||+|.-.|..|+..- ..+||+|.......|.|+
T Consensus 342 s~~~~~~~~~~~~st~~~~~~~n~~~~~~a~~s~~~~~~~c~~~~~~~~~i~ 393 (394)
T KOG2113|consen 342 SSLKGTSAGFGLLSTIWSGGNMNLSPGSLASASASPTSSTCDHNDHTLVPIN 393 (394)
T ss_pred hhcccccccCceeeeEeecCCcccChhhhhhcccCCccccccccceeeeecC
Confidence 566899999999999999999999999998742 689999998877666653
No 42
>PF04641 Rtf2: Rtf2 RING-finger
Probab=87.43 E-value=0.47 Score=44.24 Aligned_cols=47 Identities=30% Similarity=0.567 Sum_probs=36.3
Q ss_pred CCccccccccc----cccceEEeCCCCcccCcchhhhc--CCCCccccccccce
Q 023064 235 GGRMLCRRCGE----KESSVLLLPCRHLCLCTVCGSCL--IGSCPVCNFVVDAS 282 (288)
Q Consensus 235 ~~~~~C~iC~~----~~~~vlLlPCrHlclC~~C~~~l--~~~CPvCr~~i~~~ 282 (288)
.....|+|.+. ...-|+|.||||. ++..+...+ ...||+|..+++..
T Consensus 111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V-~s~~alke~k~~~~Cp~c~~~f~~~ 163 (260)
T PF04641_consen 111 EGRFICPVTGKEFNGKHKFVYLRPCGCV-FSEKALKELKKSKKCPVCGKPFTEE 163 (260)
T ss_pred CceeECCCCCcccCCceeEEEEcCCCCE-eeHHHHHhhcccccccccCCccccC
Confidence 35568999875 4568999999998 788888874 24899999997644
No 43
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.14 E-value=9.3 Score=36.33 Aligned_cols=45 Identities=20% Similarity=0.312 Sum_probs=38.0
Q ss_pred Ccccccccccc----ccceEEeCCCCcccCcchhhhc---CCCCccccccccc
Q 023064 236 GRMLCRRCGEK----ESSVLLLPCRHLCLCTVCGSCL---IGSCPVCNFVVDA 281 (288)
Q Consensus 236 ~~~~C~iC~~~----~~~vlLlPCrHlclC~~C~~~l---~~~CPvCr~~i~~ 281 (288)
.+..|.+|.+. -.+++|-||||. +|.+|..++ -..||+|-.+...
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~V-v~~ecvEklir~D~v~pv~d~plkd 271 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHV-VTKECVEKLIRKDMVDPVTDKPLKD 271 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcE-eeHHHHHHhccccccccCCCCcCcc
Confidence 56789999984 567899999999 799999987 6899999887654
No 44
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=86.97 E-value=24 Score=36.10 Aligned_cols=76 Identities=18% Similarity=0.216 Sum_probs=62.7
Q ss_pred HHhHHHHHHHHHHHHH-HHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 023064 98 AQHTEKVILELEEQRK-RQSRMLISAIQEGVANKLKEKDEEIHRMRKLNWVLQERVKSLFVENQIWRDLAQTNEATA 173 (288)
Q Consensus 98 ~~q~Erlr~~L~e~r~-r~~r~ll~avE~~~~~rLReKe~Eie~a~r~n~eLEErlrql~~E~qaWq~~A~~nEa~A 173 (288)
..|.+.+-..++|.+. .|-...+.++...+-+||.+-..-+.+..++..++.|-=+.|...-+.|++.+++-|..-
T Consensus 350 en~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~ 426 (493)
T KOG0804|consen 350 ENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEERE 426 (493)
T ss_pred HhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3444555556677777 788888999999999999999999999999999999988889999999999987765543
No 45
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=86.93 E-value=0.47 Score=45.28 Aligned_cols=45 Identities=27% Similarity=0.613 Sum_probs=34.8
Q ss_pred CCccccccccccccc-eEEeCCCCcccCcchhhhc-----CCCCcccccccc
Q 023064 235 GGRMLCRRCGEKESS-VLLLPCRHLCLCTVCGSCL-----IGSCPVCNFVVD 280 (288)
Q Consensus 235 ~~~~~C~iC~~~~~~-vlLlPCrHlclC~~C~~~l-----~~~CPvCr~~i~ 280 (288)
+...+|.+|.+.+.- .+..||+|. .|..|..+- .-.||.|.....
T Consensus 237 t~~~~C~~Cg~~PtiP~~~~~C~Hi-yCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 237 TSDTECPVCGEPPTIPHVIGKCGHI-YCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred cCCceeeccCCCCCCCeeeccccce-eehhhhhhhhcchhhcccCccCCCCc
Confidence 355689999998764 556679997 799998764 248999988765
No 46
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=86.44 E-value=0.36 Score=46.41 Aligned_cols=45 Identities=22% Similarity=0.550 Sum_probs=34.2
Q ss_pred CccccccccccccceEE-eCCCCcccCcchhhhcCCCCccccccccc
Q 023064 236 GRMLCRRCGEKESSVLL-LPCRHLCLCTVCGSCLIGSCPVCNFVVDA 281 (288)
Q Consensus 236 ~~~~C~iC~~~~~~vlL-lPCrHlclC~~C~~~l~~~CPvCr~~i~~ 281 (288)
+-..|.+|++.-.-=++ -+=||+ +|..|...+...||.||-+|+.
T Consensus 47 ~lleCPvC~~~l~~Pi~QC~nGHl-aCssC~~~~~~~CP~Cr~~~g~ 92 (299)
T KOG3002|consen 47 DLLDCPVCFNPLSPPIFQCDNGHL-ACSSCRTKVSNKCPTCRLPIGN 92 (299)
T ss_pred hhccCchhhccCcccceecCCCcE-ehhhhhhhhcccCCcccccccc
Confidence 34579999987544444 233799 7999996659999999999884
No 47
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=85.96 E-value=33 Score=36.83 Aligned_cols=55 Identities=20% Similarity=0.288 Sum_probs=39.7
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHH
Q 023064 129 NKLKEKDEEIHRMRKLNWVLQERVKSLFVENQIWRDLAQTNEATANTLRSNLEQV 183 (288)
Q Consensus 129 ~rLReKe~Eie~a~r~n~eLEErlrql~~E~qaWq~~A~~nEa~A~~Lra~L~q~ 183 (288)
.|.|+.|.||.+.++..+..||+++.++.|.+.-+..-++++.-+-.|-+.|.-+
T Consensus 545 ~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~am 599 (697)
T PF09726_consen 545 QRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAM 599 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 3667788899999999999999999999999777765344444444455555443
No 48
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=85.59 E-value=0.25 Score=49.17 Aligned_cols=42 Identities=21% Similarity=0.450 Sum_probs=0.0
Q ss_pred cccceEEeCCCCccc----Ccchhhhc-------CCCCccccccccc---eEEEee
Q 023064 246 KESSVLLLPCRHLCL----CTVCGSCL-------IGSCPVCNFVVDA---SLHVNL 287 (288)
Q Consensus 246 ~~~~vlLlPCrHlcl----C~~C~~~l-------~~~CPvCr~~i~~---~v~V~~ 287 (288)
.+.+.+|.||||+|. =.++...+ ...||.|-.++.+ +|+++|
T Consensus 356 ~~pthaF~PCGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g~~g~vrLiF 411 (416)
T PF04710_consen 356 GPPTHAFNPCGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLDGEQGYVRLIF 411 (416)
T ss_dssp --------------------------------------------------------
T ss_pred CCCceeecccccccchhhhhhhhcCCCCCCcccccccCCcccCcccCCCCceEEEE
Confidence 456788999999963 12222222 4799999999875 676665
No 49
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=85.42 E-value=0.56 Score=35.56 Aligned_cols=41 Identities=27% Similarity=0.592 Sum_probs=20.6
Q ss_pred cccccccccccce-EEeCCCCcccCcchhhhc-CCCCccccccc
Q 023064 238 MLCRRCGEKESSV-LLLPCRHLCLCTVCGSCL-IGSCPVCNFVV 279 (288)
Q Consensus 238 ~~C~iC~~~~~~v-lLlPCrHlclC~~C~~~l-~~~CPvCr~~i 279 (288)
..|.+|.+--..- .+--|-|. +|..|...- ...||+|+.+-
T Consensus 8 LrCs~C~~~l~~pv~l~~CeH~-fCs~Ci~~~~~~~CPvC~~Pa 50 (65)
T PF14835_consen 8 LRCSICFDILKEPVCLGGCEHI-FCSSCIRDCIGSECPVCHTPA 50 (65)
T ss_dssp TS-SSS-S--SS-B---SSS---B-TTTGGGGTTTB-SSS--B-
T ss_pred cCCcHHHHHhcCCceeccCccH-HHHHHhHHhcCCCCCCcCChH
Confidence 4699998864444 57789999 899998763 47899999875
No 50
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=85.16 E-value=46 Score=37.13 Aligned_cols=74 Identities=20% Similarity=0.206 Sum_probs=45.0
Q ss_pred hHHHHHHHHhhhHHHHHHHHHhHHHHHHH-------HHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHH
Q 023064 79 DQDIIFRLQQQQSEIDRYIAQHTEKVILE-------LEEQRKRQSRMLISAIQEGVANKLKEKDEEIHRMRKLNWVLQER 151 (288)
Q Consensus 79 ~~~l~~~l~~Q~~EiD~~i~~q~Erlr~~-------L~e~r~r~~r~ll~avE~~~~~rLReKe~Eie~a~r~n~eLEEr 151 (288)
-+|+..+|.+|+.++-++..-|.|=.|+- |+-+--||+..-++.=+..--+||.| |+.+-.+++.+|.+.
T Consensus 878 ~ed~~~~l~~qQe~~a~l~~sQ~el~~~l~~ql~g~le~~l~~~iEk~lks~~d~~~~rl~e---~la~~e~~~r~~~~q 954 (1283)
T KOG1916|consen 878 MEDLLPQLLAQQETMAQLMASQKELQRQLSNQLTGPLEVALGRMIEKSLKSNADALWARLQE---ELAKNEKALRDLQQQ 954 (1283)
T ss_pred hhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcchHHHHHHHHHHHHHHhhHHHHHHHHHH---HHHhhhhhhhHHHHH
Confidence 45677788888888888887776544432 33344444444444444444444444 666667777777777
Q ss_pred HHHH
Q 023064 152 VKSL 155 (288)
Q Consensus 152 lrql 155 (288)
+-|.
T Consensus 955 i~q~ 958 (1283)
T KOG1916|consen 955 ITQQ 958 (1283)
T ss_pred HHHH
Confidence 7554
No 51
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=85.13 E-value=33 Score=32.05 Aligned_cols=96 Identities=18% Similarity=0.259 Sum_probs=66.1
Q ss_pred HHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH--HhHHHHHHhhHHHHHHHHHHHHHHHHHHHHH----HHH
Q 023064 85 RLQQQQSEIDRYIAQHTEKVILELEEQRKRQSRMLISAIQ--EGVANKLKEKDEEIHRMRKLNWVLQERVKSL----FVE 158 (288)
Q Consensus 85 ~l~~Q~~EiD~~i~~q~Erlr~~L~e~r~r~~r~ll~avE--~~~~~rLReKe~Eie~a~r~n~eLEErlrql----~~E 158 (288)
.+.+-+.|++.+.+.+.+.++........ .+-.+=+ ...-..+.....+|+.+..+|..||.++..+ ..+
T Consensus 181 ~~~~~~~e~e~~y~~k~~~l~~~~~~~~~----~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~ 256 (312)
T PF00038_consen 181 IAQKNREELEEWYQSKLEELRQQSEKSSE----ELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEE 256 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhhhhhhhccccccccccccccccc----ccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHH
Confidence 44566678888888888777776655332 2222222 2334557778889999999999999999766 456
Q ss_pred HHHHHHHHHhhHHHHHHHHHhHHHHH
Q 023064 159 NQIWRDLAQTNEATANTLRSNLEQVL 184 (288)
Q Consensus 159 ~qaWq~~A~~nEa~A~~Lra~L~q~l 184 (288)
.+.|+..-..-|+-...|+..+++.+
T Consensus 257 ~~~~~~~i~~le~el~~l~~~~~~~~ 282 (312)
T PF00038_consen 257 REEYQAEIAELEEELAELREEMARQL 282 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhccchhHHHHHHHHHHHH
Confidence 66677777777777777777776544
No 52
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=84.48 E-value=0.41 Score=47.73 Aligned_cols=46 Identities=22% Similarity=0.517 Sum_probs=36.7
Q ss_pred CCccccccccccccceEEeCCCCcccCcchhhhc---CCCCccccccccc
Q 023064 235 GGRMLCRRCGEKESSVLLLPCRHLCLCTVCGSCL---IGSCPVCNFVVDA 281 (288)
Q Consensus 235 ~~~~~C~iC~~~~~~vlLlPCrHlclC~~C~~~l---~~~CPvCr~~i~~ 281 (288)
.....|.||+..--.-+..||||. .|..|-.+. ...||.||..+..
T Consensus 82 ~sef~c~vc~~~l~~pv~tpcghs-~c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 82 RSEFECCVCSRALYPPVVTPCGHS-FCLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred cchhhhhhhHhhcCCCcccccccc-ccHHHHHHHhccCCCCccccccccc
Confidence 356689999998777777799999 799993332 7899999988764
No 53
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=84.30 E-value=23 Score=35.36 Aligned_cols=40 Identities=25% Similarity=0.478 Sum_probs=31.3
Q ss_pred chHHHHHHHHhhhHHHHHHHHHhHH----------HHHHHHHHHHHHHHH
Q 023064 78 LDQDIIFRLQQQQSEIDRYIAQHTE----------KVILELEEQRKRQSR 117 (288)
Q Consensus 78 ~~~~l~~~l~~Q~~EiD~~i~~q~E----------rlr~~L~e~r~r~~r 117 (288)
-|||+.++|++.+..+-+-|..+.+ +|-+.|+|-|+||-.
T Consensus 136 eGDDlt~~LEKEReqL~QQiEFe~~e~kK~E~~k~Kl~~qLeeEk~RHeq 185 (561)
T KOG1103|consen 136 EGDDLTAHLEKEREQLQQQIEFEIEEKKKAEIAKDKLEMQLEEEKKRHEQ 185 (561)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4889999999888888777776654 566778999999853
No 54
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=83.72 E-value=0.43 Score=45.89 Aligned_cols=46 Identities=26% Similarity=0.508 Sum_probs=40.0
Q ss_pred ccccccccccceEEeCCCCcccCcchhhhc---CCCCccccccccceEEE
Q 023064 239 LCRRCGEKESSVLLLPCRHLCLCTVCGSCL---IGSCPVCNFVVDASLHV 285 (288)
Q Consensus 239 ~C~iC~~~~~~vlLlPCrHlclC~~C~~~l---~~~CPvCr~~i~~~v~V 285 (288)
.|-||..--.+=|+--|+|. +|..|+..- ...|++|...+.++..+
T Consensus 243 ~c~icr~~f~~pVvt~c~h~-fc~~ca~~~~qk~~~c~vC~~~t~g~~~~ 291 (313)
T KOG1813|consen 243 KCFICRKYFYRPVVTKCGHY-FCEVCALKPYQKGEKCYVCSQQTHGSFNV 291 (313)
T ss_pred cccccccccccchhhcCCce-eehhhhccccccCCcceecccccccccch
Confidence 49999999888888899999 899998775 58899999999887654
No 55
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=83.65 E-value=0.27 Score=52.73 Aligned_cols=45 Identities=20% Similarity=0.330 Sum_probs=32.9
Q ss_pred ccccccccccceEE---eCCCCcccCcchhhhc---CCCCccccccccceEE
Q 023064 239 LCRRCGEKESSVLL---LPCRHLCLCTVCGSCL---IGSCPVCNFVVDASLH 284 (288)
Q Consensus 239 ~C~iC~~~~~~vlL---lPCrHlclC~~C~~~l---~~~CPvCr~~i~~~v~ 284 (288)
.|.+|...-.+-+. .+|.|+ +|..|...+ ..+||+||..+...+.
T Consensus 125 ~CP~Ci~s~~DqL~~~~k~c~H~-FC~~Ci~sWsR~aqTCPiDR~EF~~v~V 175 (1134)
T KOG0825|consen 125 QCPNCLKSCNDQLEESEKHTAHY-FCEECVGSWSRCAQTCPVDRGEFGEVKV 175 (1134)
T ss_pred hhhHHHHHHHHHhhccccccccc-cHHHHhhhhhhhcccCchhhhhhheeee
Confidence 45565554443333 689999 899998887 8999999998766554
No 56
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=82.80 E-value=0.87 Score=34.36 Aligned_cols=44 Identities=20% Similarity=0.253 Sum_probs=32.1
Q ss_pred ccccccccccccceEEeCCCCcccCcchhhhc----CCCCccccccccc
Q 023064 237 RMLCRRCGEKESSVLLLPCRHLCLCTVCGSCL----IGSCPVCNFVVDA 281 (288)
Q Consensus 237 ~~~C~iC~~~~~~vlLlPCrHlclC~~C~~~l----~~~CPvCr~~i~~ 281 (288)
...|.|+++--.+=+++||||. .+..|-... ...||+|+.+++.
T Consensus 4 ~f~CpIt~~lM~dPVi~~~G~t-yer~~I~~~l~~~~~~~P~t~~~l~~ 51 (73)
T PF04564_consen 4 EFLCPITGELMRDPVILPSGHT-YERSAIERWLEQNGGTDPFTRQPLSE 51 (73)
T ss_dssp GGB-TTTSSB-SSEEEETTSEE-EEHHHHHHHHCTTSSB-TTT-SB-SG
T ss_pred ccCCcCcCcHhhCceeCCcCCE-EcHHHHHHHHHcCCCCCCCCCCcCCc
Confidence 4579999999999999999966 788886654 4779999988775
No 57
>PF12126 DUF3583: Protein of unknown function (DUF3583); InterPro: IPR021978 This domain is found in eukaryotes, and is typically between 302 and 338 amino acids in length. It is found in association with PF00097 from PFAM and PF00643 from PFAM. Most members are promyelocytic leukemia proteins, and this family lies towards the C terminus.
Probab=81.23 E-value=56 Score=31.81 Aligned_cols=41 Identities=17% Similarity=0.382 Sum_probs=32.5
Q ss_pred HHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023064 82 IIFRLQQQQSEIDRYIAQHTEKVILELEEQRKRQSRMLISAIQEG 126 (288)
Q Consensus 82 l~~~l~~Q~~EiD~~i~~q~Erlr~~L~e~r~r~~r~ll~avE~~ 126 (288)
..++|.+.+.|+.-+|+.+..+|-..++.+ =+.||.+|+..
T Consensus 25 av~qL~~~r~~teelIr~rVrq~V~hVqaq----EreLLe~v~~r 65 (324)
T PF12126_consen 25 AVSQLGRARADTEELIRARVRQVVAHVQAQ----ERELLEAVEAR 65 (324)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 457899999999999999988877666544 47888888854
No 58
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=80.84 E-value=36 Score=33.73 Aligned_cols=29 Identities=17% Similarity=0.239 Sum_probs=18.1
Q ss_pred HHHHHhhhHHHHHHHHHhHHHHHHHHHHHH
Q 023064 83 IFRLQQQQSEIDRYIAQHTEKVILELEEQR 112 (288)
Q Consensus 83 ~~~l~~Q~~EiD~~i~~q~Erlr~~L~e~r 112 (288)
..-++.++.|.++ ++.|+++|...|-..|
T Consensus 91 ~es~~e~q~e~~q-L~~qnqkL~nqL~~~~ 119 (401)
T PF06785_consen 91 RESVEERQQESEQ-LQSQNQKLKNQLFHVR 119 (401)
T ss_pred HHHHHHHHHHHHH-HHHhHHHHHHHHHHHH
Confidence 3456666667766 4677777776665444
No 59
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=80.14 E-value=39 Score=31.73 Aligned_cols=59 Identities=17% Similarity=0.236 Sum_probs=32.4
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 023064 89 QQSEIDRYIAQHTEKVILELEEQRKRQSRMLISAIQEGVANKLKEKDEEIHRMRKLNWVLQERVKSLFVE 158 (288)
Q Consensus 89 Q~~EiD~~i~~q~Erlr~~L~e~r~r~~r~ll~avE~~~~~rLReKe~Eie~a~r~n~eLEErlrql~~E 158 (288)
=..|||+-|... +..+..+....++.....++.+.+.++......+.+++..+.++..+
T Consensus 106 F~~eI~~~l~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~ 164 (301)
T PF14362_consen 106 FEKEIDQKLDEI-----------RQEKQDAIQAQVQASFDAQIARLDAEIAALQAEIDQLEKEIDRAQQE 164 (301)
T ss_pred HHHHHHHHHHHH-----------HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346666555443 44444444444444555556666666666666666666666555443
No 60
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=78.80 E-value=2.7 Score=31.33 Aligned_cols=31 Identities=29% Similarity=0.313 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023064 136 EEIHRMRKLNWVLQERVKSLFVENQIWRDLA 166 (288)
Q Consensus 136 ~Eie~a~r~n~eLEErlrql~~E~qaWq~~A 166 (288)
+|++-.+.++.+|+++..++..||...+..|
T Consensus 14 EEVevLK~~I~eL~~~n~~Le~EN~~Lk~~~ 44 (59)
T PF01166_consen 14 EEVEVLKEQIAELEERNSQLEEENNLLKQNA 44 (59)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3999999999999999999999998776543
No 61
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=77.63 E-value=65 Score=30.61 Aligned_cols=78 Identities=17% Similarity=0.164 Sum_probs=47.2
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023064 90 QSEIDRYIAQHTEKVILELEEQRKRQSRMLISAIQEGVANKLKEK-------DEEIHRMRKLNWVLQERVKSLFVENQIW 162 (288)
Q Consensus 90 ~~EiD~~i~~q~Erlr~~L~e~r~r~~r~ll~avE~~~~~rLReK-------e~Eie~a~r~n~eLEErlrql~~E~qaW 162 (288)
.+|+..+++...+.|-..++++.+.=..+++..+-...-..|+++ ..||..-+.-+.+|++.+.+|.+|.+.-
T Consensus 140 ldel~e~~~~el~~l~~~~q~k~~~il~~~~~k~~~~~~~~l~~~~~~N~~m~kei~~~re~i~el~e~I~~L~~eV~~L 219 (258)
T PF15397_consen 140 LDELNEMRQMELASLSRKIQEKKEEILSSAAEKTQSPMQPALLQRTLENQVMQKEIVQFREEIDELEEEIPQLRAEVEQL 219 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445556666666666666665555444443333222233332 2577777888888888888888888877
Q ss_pred HHHHH
Q 023064 163 RDLAQ 167 (288)
Q Consensus 163 q~~A~ 167 (288)
+..++
T Consensus 220 ~~~~~ 224 (258)
T PF15397_consen 220 QAQAQ 224 (258)
T ss_pred HHhhc
Confidence 66655
No 62
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=76.60 E-value=35 Score=33.01 Aligned_cols=30 Identities=30% Similarity=0.117 Sum_probs=18.1
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023064 130 KLKEKDEEIHRMRKLNWVLQERVKSLFVEN 159 (288)
Q Consensus 130 rLReKe~Eie~a~r~n~eLEErlrql~~E~ 159 (288)
+|++-+.||+..+++..++++++..+...-
T Consensus 212 ~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I 241 (312)
T smart00787 212 KLKKLLQEIMIKVKKLEELEEELQELESKI 241 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666666666665443
No 63
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=76.01 E-value=17 Score=34.27 Aligned_cols=38 Identities=16% Similarity=0.247 Sum_probs=23.1
Q ss_pred hHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 023064 79 DQDIIFRLQQQQSEIDRYIAQHTEKVILELEEQRKRQSRMLISAIQ 124 (288)
Q Consensus 79 ~~~l~~~l~~Q~~EiD~~i~~q~Erlr~~L~e~r~r~~r~ll~avE 124 (288)
||.+..+|++--.++|.+. ..+-....++++.|-.-+|
T Consensus 159 Gd~l~~eLqkr~~~v~~l~--------~q~~k~~~~qv~~in~qlE 196 (289)
T COG4985 159 GDPLERELQKRLLEVETLR--------DQVDKMVEQQVRVINSQLE 196 (289)
T ss_pred CcHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHH
Confidence 6778888888777776543 3333344555555555555
No 64
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=75.97 E-value=12 Score=30.87 Aligned_cols=66 Identities=20% Similarity=0.286 Sum_probs=43.4
Q ss_pred cchHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 023064 77 LLDQDIIFRLQQQQSEIDRYIAQHTEKVILELEEQRKRQSRMLISAIQEGVANKLKEKDEEIHRMRKLNWVLQERVKSLF 156 (288)
Q Consensus 77 ~~~~~l~~~l~~Q~~EiD~~i~~q~Erlr~~L~e~r~r~~r~ll~avE~~~~~rLReKe~Eie~a~r~n~eLEErlrql~ 156 (288)
+++..+.--+.=-+.=|+.++..| ..|...-.....++++...+++++..++.++.+.++.+.
T Consensus 52 ~~dp~~~klfrLaQl~ieYLl~~q-----------------~~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk 114 (118)
T PF13815_consen 52 FVDPNFLKLFRLAQLSIEYLLHCQ-----------------EYLSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLK 114 (118)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444433444445566666554 222222334457788888999999999999999999998
Q ss_pred HHH
Q 023064 157 VEN 159 (288)
Q Consensus 157 ~E~ 159 (288)
.|+
T Consensus 115 ~E~ 117 (118)
T PF13815_consen 115 KES 117 (118)
T ss_pred Hhc
Confidence 775
No 65
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=75.94 E-value=1.1 Score=43.73 Aligned_cols=41 Identities=29% Similarity=0.838 Sum_probs=29.7
Q ss_pred cccccccccccce--EEeCCCCcccCcchhhhc-CCCCcccccccc
Q 023064 238 MLCRRCGEKESSV--LLLPCRHLCLCTVCGSCL-IGSCPVCNFVVD 280 (288)
Q Consensus 238 ~~C~iC~~~~~~v--lLlPCrHlclC~~C~~~l-~~~CPvCr~~i~ 280 (288)
..|.-|.- +.-| -++||.|. +|.+|+..- .+.||.|--.|.
T Consensus 91 HfCd~Cd~-PI~IYGRmIPCkHv-FCl~CAr~~~dK~Cp~C~d~Vq 134 (389)
T KOG2932|consen 91 HFCDRCDF-PIAIYGRMIPCKHV-FCLECARSDSDKICPLCDDRVQ 134 (389)
T ss_pred EeecccCC-cceeeecccccchh-hhhhhhhcCccccCcCcccHHH
Confidence 46777854 3333 26899999 899999872 359999977654
No 66
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=75.87 E-value=35 Score=28.30 Aligned_cols=66 Identities=27% Similarity=0.278 Sum_probs=44.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHH---HHHHHHHHHHHHhHHHHHHhhH----HHHHHHHHHHHHHHHHHHHHH
Q 023064 91 SEIDRYIAQHTEKVILELEEQRK---RQSRMLISAIQEGVANKLKEKD----EEIHRMRKLNWVLQERVKSLF 156 (288)
Q Consensus 91 ~EiD~~i~~q~Erlr~~L~e~r~---r~~r~ll~avE~~~~~rLReKe----~Eie~a~r~n~eLEErlrql~ 156 (288)
.-+|.++..-.|.++..+.+.+. .+...+=.+++..+.+-|.... +||+.+..+..+|+.++.+|.
T Consensus 44 ~~~~e~~~~~~e~~~~~~~~~~~~~~~~~~~le~~~~~~v~~~L~~lg~~tk~ev~~L~~RI~~Le~~l~~l~ 116 (118)
T TIGR01837 44 KRFDESVDAAREEVKTALEQTRDQVQRNWDKLEKAFDERVEQALNRLNIPSREEIEALSAKIEQLAVQVEELR 116 (118)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566665555666666666554 3334555666666666666655 799999999999999998875
No 67
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=75.70 E-value=1.1 Score=47.62 Aligned_cols=41 Identities=27% Similarity=0.669 Sum_probs=35.2
Q ss_pred cccccccccccceEEeCCCCcccCcchhhhc-----CCCCcccccccc
Q 023064 238 MLCRRCGEKESSVLLLPCRHLCLCTVCGSCL-----IGSCPVCNFVVD 280 (288)
Q Consensus 238 ~~C~iC~~~~~~vlLlPCrHlclC~~C~~~l-----~~~CPvCr~~i~ 280 (288)
..|.+|.+ ..+.++.+|+|. .|..|-... ...||+||..+.
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~-~c~~c~~~~i~~~~~~~~~~cr~~l~ 500 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHD-FCVECLKKSIQQSENAPCPLCRNVLK 500 (674)
T ss_pred cccccccc-cccceeecccch-HHHHHHHhccccccCCCCcHHHHHHH
Confidence 68999999 889999999999 899997765 457999998764
No 68
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=75.42 E-value=27 Score=29.53 Aligned_cols=53 Identities=19% Similarity=0.221 Sum_probs=32.0
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhH
Q 023064 128 ANKLKEKDEEIHRMRKLNWVLQERVKSLFVENQIWRDLAQTNEATANTLRSNL 180 (288)
Q Consensus 128 ~~rLReKe~Eie~a~r~n~eLEErlrql~~E~qaWq~~A~~nEa~A~~Lra~L 180 (288)
..+++.++.++++....+..|++++..+..|...++..-+.-+.....+...+
T Consensus 58 ~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~ 110 (151)
T PF11559_consen 58 SDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKL 110 (151)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666677777777777777777776666666665555444444443333
No 69
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=75.19 E-value=0.83 Score=41.96 Aligned_cols=46 Identities=26% Similarity=0.587 Sum_probs=39.8
Q ss_pred ccccccccccceEEeCCCCcccCcchhhhc---CCCCccccccccceEEE
Q 023064 239 LCRRCGEKESSVLLLPCRHLCLCTVCGSCL---IGSCPVCNFVVDASLHV 285 (288)
Q Consensus 239 ~C~iC~~~~~~vlLlPCrHlclC~~C~~~l---~~~CPvCr~~i~~~v~V 285 (288)
.|-||...-.+-++--|||. +|..|+..- ...|-+|.....+...|
T Consensus 198 ~C~iCKkdy~spvvt~CGH~-FC~~Cai~~y~kg~~C~~Cgk~t~G~f~V 246 (259)
T COG5152 198 LCGICKKDYESPVVTECGHS-FCSLCAIRKYQKGDECGVCGKATYGRFWV 246 (259)
T ss_pred eehhchhhccchhhhhcchh-HHHHHHHHHhccCCcceecchhhccceeH
Confidence 79999999888888899999 899998764 68999999888776654
No 70
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=74.59 E-value=36 Score=26.04 Aligned_cols=56 Identities=25% Similarity=0.260 Sum_probs=26.1
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHH
Q 023064 128 ANKLKEKDEEIHRMRKLNWVLQERVKSLFVENQIWRDLAQTNEATANTLRSNLEQV 183 (288)
Q Consensus 128 ~~rLReKe~Eie~a~r~n~eLEErlrql~~E~qaWq~~A~~nEa~A~~Lra~L~q~ 183 (288)
.++|++||+.|+........|...--+...-.---+...+++|.....|+..++.+
T Consensus 4 ~~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~ 59 (74)
T PF12329_consen 4 EKKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEEL 59 (74)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777666665544444433332333333333333344455555555444443
No 71
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=74.27 E-value=0.92 Score=46.53 Aligned_cols=46 Identities=24% Similarity=0.477 Sum_probs=31.5
Q ss_pred CCcccccccccc-----------------ccceEEeCCCCcccCcchhhhc----CCCCccccccccc
Q 023064 235 GGRMLCRRCGEK-----------------ESSVLLLPCRHLCLCTVCGSCL----IGSCPVCNFVVDA 281 (288)
Q Consensus 235 ~~~~~C~iC~~~-----------------~~~vlLlPCrHlclC~~C~~~l----~~~CPvCr~~i~~ 281 (288)
+...-|+||+.. .++-+|-||.|+ .=..|-... ...||+||+++..
T Consensus 569 ~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~Hi-fH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 569 RRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHI-FHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred hccccceEeccccceeeccCcchhhhhhhhccccccchHHH-HHHHHHHHHHhhhcccCCccCCCCCC
Confidence 344579999972 123456699998 456676554 3489999998753
No 72
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=73.88 E-value=1e+02 Score=31.45 Aligned_cols=69 Identities=29% Similarity=0.300 Sum_probs=40.6
Q ss_pred HHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHH-----HHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 023064 85 RLQQQQSEIDRYIAQHTEKVILELEEQRKRQS-----RMLISAIQEGVANKLKEKDEEIHRMRKLNWVLQERVKSLFV 157 (288)
Q Consensus 85 ~l~~Q~~EiD~~i~~q~Erlr~~L~e~r~r~~-----r~ll~avE~~~~~rLReKe~Eie~a~r~n~eLEErlrql~~ 157 (288)
+++.|..+.|+=+ ++++..|++.=+++. ..++.|--+++-.+|.+||.||.++...|-.|-|+.-+..+
T Consensus 3 ~~~s~~s~~dqr~----~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~~~a 76 (459)
T KOG0288|consen 3 PLYSQKSENDQRL----IDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVREEA 76 (459)
T ss_pred hhhhhhhhhhhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666533 233333333333332 23444555566778889999999999988888664444443
No 73
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=73.20 E-value=0.89 Score=42.86 Aligned_cols=40 Identities=28% Similarity=0.737 Sum_probs=30.5
Q ss_pred ccccccccc-----cccceEEeC-CCCcccCcchhhhc----CCCCc--cccc
Q 023064 237 RMLCRRCGE-----KESSVLLLP-CRHLCLCTVCGSCL----IGSCP--VCNF 277 (288)
Q Consensus 237 ~~~C~iC~~-----~~~~vlLlP-CrHlclC~~C~~~l----~~~CP--vCr~ 277 (288)
.+.|++|.. ...-+++-| |.|. +|..|-.++ ...|| .|..
T Consensus 10 d~~CPvCksDrYLnPdik~linPECyHr-mCESCvdRIFs~GpAqCP~~gC~k 61 (314)
T COG5220 10 DRRCPVCKSDRYLNPDIKILINPECYHR-MCESCVDRIFSRGPAQCPYKGCGK 61 (314)
T ss_pred cccCCccccccccCCCeEEEECHHHHHH-HHHHHHHHHhcCCCCCCCCccHHH
Confidence 347999976 234455668 9999 899999887 67899 7754
No 74
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=72.54 E-value=24 Score=36.41 Aligned_cols=51 Identities=24% Similarity=0.317 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhhHHHHHHHHHhHHHHHHhcC
Q 023064 136 EEIHRMRKLNWVLQERVKSLF--VENQIWRDLAQTNEATANTLRSNLEQVLAHVG 188 (288)
Q Consensus 136 ~Eie~a~r~n~eLEErlrql~--~E~qaWq~~A~~nEa~A~~Lra~L~q~l~q~~ 188 (288)
.-|+++++|+++|++|+-++- .|...-+..+..-.+ ..|++.|+-++++..
T Consensus 376 ~KI~~~k~r~~~Ls~RiLRv~ikqeilr~~G~~L~~~E--E~Lr~Kldtll~~ln 428 (508)
T KOG3091|consen 376 AKIEEAKNRHVELSHRILRVMIKQEILRKRGYALTPDE--EELRAKLDTLLAQLN 428 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCccH--HHHHHHHHHHHHHhc
Confidence 568888888888888886654 333333333333222 236677776666553
No 75
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=72.08 E-value=43 Score=34.41 Aligned_cols=34 Identities=18% Similarity=0.358 Sum_probs=25.3
Q ss_pred HHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHH
Q 023064 81 DIIFRLQQQQSEIDRYIAQHTEKVILELEEQRKRQ 115 (288)
Q Consensus 81 ~l~~~l~~Q~~EiD~~i~~q~Erlr~~L~e~r~r~ 115 (288)
.|.+++++-+.|+..+++ ++++|+.+-++.|+|.
T Consensus 63 Tlva~~k~~r~~~~~l~~-~N~~l~~eN~~L~~r~ 96 (472)
T TIGR03752 63 TLVAEVKELRKRLAKLIS-ENEALKAENERLQKRE 96 (472)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhh
Confidence 367788888888888764 6777777777776654
No 76
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=71.61 E-value=3.2 Score=41.00 Aligned_cols=34 Identities=21% Similarity=0.466 Sum_probs=23.8
Q ss_pred CCccccccccccccceEEeCCCCcccCcchhhhc----------------CCCCccccccc
Q 023064 235 GGRMLCRRCGEKESSVLLLPCRHLCLCTVCGSCL----------------IGSCPVCNFVV 279 (288)
Q Consensus 235 ~~~~~C~iC~~~~~~vlLlPCrHlclC~~C~~~l----------------~~~CPvCr~~i 279 (288)
.....|..|+=++++ |.+|-++. ...||.||+++
T Consensus 301 ~~~~~C~~C~CRPmW-----------C~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~F 350 (358)
T PF10272_consen 301 PNEPPCQQCYCRPMW-----------CLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKF 350 (358)
T ss_pred ccCCCCccccccchH-----------HHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccc
Confidence 345578888755543 77886654 47899999875
No 77
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=70.07 E-value=22 Score=29.81 Aligned_cols=30 Identities=30% Similarity=0.377 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023064 137 EIHRMRKLNWVLQERVKSLFVENQIWRDLA 166 (288)
Q Consensus 137 Eie~a~r~n~eLEErlrql~~E~qaWq~~A 166 (288)
|+|-.+.++.+|+||..+|+.||...+..+
T Consensus 68 EVe~Lk~qI~eL~er~~~Le~EN~lLk~~~ 97 (123)
T KOG4797|consen 68 EVEVLKEQIRELEERNSALERENSLLKTLA 97 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 999999999999999999999999988776
No 78
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=70.05 E-value=1.9e+02 Score=32.29 Aligned_cols=48 Identities=15% Similarity=0.189 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHH
Q 023064 136 EEIHRMRKLNWVLQERVKSLFVENQIWRDLAQTNEATANTLRSNLEQV 183 (288)
Q Consensus 136 ~Eie~a~r~n~eLEErlrql~~E~qaWq~~A~~nEa~A~~Lra~L~q~ 183 (288)
.-+..+.+.|.+|.+.|.++.-+.+-|-.+.++..-+...|+.+|.-+
T Consensus 459 ~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l 506 (980)
T KOG0980|consen 459 QSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALL 506 (980)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 345567899999999999999999999999888888777777776544
No 79
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=69.72 E-value=43 Score=26.04 Aligned_cols=31 Identities=16% Similarity=0.277 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023064 137 EIHRMRKLNWVLQERVKSLFVENQIWRDLAQ 167 (288)
Q Consensus 137 Eie~a~r~n~eLEErlrql~~E~qaWq~~A~ 167 (288)
|...+...+-.|+-.-.|+..|-..||..-+
T Consensus 40 e~q~~q~~reaL~~eneqlk~e~~~WQerlr 70 (79)
T COG3074 40 EVQNAQHQREALERENEQLKEEQNGWQERLR 70 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555566666777777889999999987643
No 80
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=69.32 E-value=2.6 Score=41.22 Aligned_cols=50 Identities=10% Similarity=0.092 Sum_probs=40.6
Q ss_pred CccccccccccccceEEeCCCCcccCcchhhhc----CCCCccccccccceEEE
Q 023064 236 GRMLCRRCGEKESSVLLLPCRHLCLCTVCGSCL----IGSCPVCNFVVDASLHV 285 (288)
Q Consensus 236 ~~~~C~iC~~~~~~vlLlPCrHlclC~~C~~~l----~~~CPvCr~~i~~~v~V 285 (288)
....|.+|+.+..-+.+.||+|-+.|..|.... ...||+|....+....|
T Consensus 135 ~ti~~iqq~tnt~I~T~v~~~~~Vf~Vtg~~~nC~kra~s~eie~ta~~ra~~i 188 (394)
T KOG2113|consen 135 ATIKRIQQFTNTYIATPVRCGEPVFCVTGAPKNCVKRARSCEIEQTAVTRAGQI 188 (394)
T ss_pred CccchheecccceEeeeccCCCceEEEecCCcchhhhccccchhhhhhhhhhcc
Confidence 345799999999999999999999998875553 67799998877665544
No 81
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=69.15 E-value=2.9 Score=29.49 Aligned_cols=37 Identities=30% Similarity=0.790 Sum_probs=24.1
Q ss_pred ccccccc--cccceEEeCCC-----CcccCcchhhhc-----CCCCcccc
Q 023064 239 LCRRCGE--KESSVLLLPCR-----HLCLCTVCGSCL-----IGSCPVCN 276 (288)
Q Consensus 239 ~C~iC~~--~~~~vlLlPCr-----HlclC~~C~~~l-----~~~CPvCr 276 (288)
.|+||++ .+.+.++.||. |+ +=..|.... ...||+|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~-vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKY-VHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhH-HHHHHHHHHHHHcCCCcCCCCC
Confidence 4899996 66778899995 22 113454443 45899985
No 82
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=69.07 E-value=92 Score=28.41 Aligned_cols=79 Identities=20% Similarity=0.237 Sum_probs=37.8
Q ss_pred hHHH-HHHHHhhhHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 023064 79 DQDI-IFRLQQQQSEIDRYIAQHTEKVILELEEQRK-RQSRMLISAIQEGVANKLKEKDEEIHRMRKLNWVLQERVKSLF 156 (288)
Q Consensus 79 ~~~l-~~~l~~Q~~EiD~~i~~q~Erlr~~L~e~r~-r~~r~ll~avE~~~~~rLReKe~Eie~a~r~n~eLEErlrql~ 156 (288)
+.|| ..+|+-|+.-+|++|..+.+|+..-=.+... |.-.+-+..-...+..-.++.+.|-..+..+..+|..+|++|.
T Consensus 102 ~~eirR~~LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq 181 (192)
T PF11180_consen 102 DVEIRRAQLEAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQVRQLQ 181 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455 3567777777777776665444333222211 1122223333333333344444455555555555555555554
Q ss_pred H
Q 023064 157 V 157 (288)
Q Consensus 157 ~ 157 (288)
.
T Consensus 182 ~ 182 (192)
T PF11180_consen 182 R 182 (192)
T ss_pred H
Confidence 3
No 83
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=68.50 E-value=66 Score=26.51 Aligned_cols=62 Identities=18% Similarity=0.225 Sum_probs=38.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023064 97 IAQHTEKVILELEEQRKRQSRMLISAIQEGVANKLKEKDEEIHRMRKLNWVLQERVKSLFVENQ 160 (288)
Q Consensus 97 i~~q~Erlr~~L~e~r~r~~r~ll~avE~~~~~rLReKe~Eie~a~r~n~eLEErlrql~~E~q 160 (288)
|+.|+.-|+.++-+-+.... .|-.-+... -..||-.+.|++.+.-+|..|+-|+..|-.|-.
T Consensus 10 LraQ~~vLKKaVieEQ~k~~-~L~e~Lk~k-e~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~ 71 (102)
T PF10205_consen 10 LRAQNQVLKKAVIEEQAKNA-ELKEQLKEK-EQALRKLEQENDSLTFRNQQLTKRVEVLQEELE 71 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777777665554433 222222211 134666678889999999999988877665443
No 84
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=68.05 E-value=1.1e+02 Score=32.47 Aligned_cols=84 Identities=20% Similarity=0.350 Sum_probs=54.6
Q ss_pred HHHhhhHHH-HHHHHHhHHHH----HHHHHHHHHHHHHHHHHHHHHh---HHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 023064 85 RLQQQQSEI-DRYIAQHTEKV----ILELEEQRKRQSRMLISAIQEG---VANKLKEKDEEIHRMRKLNWVLQERVKSLF 156 (288)
Q Consensus 85 ~l~~Q~~Ei-D~~i~~q~Erl----r~~L~e~r~r~~r~ll~avE~~---~~~rLReKe~Eie~a~r~n~eLEErlrql~ 156 (288)
+|++|-.|+ |.|+++.+++| ....+.+..+....=+.-++.. +..+|..|+.|+..+...+.++...+.|..
T Consensus 164 eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~q~dq~~~~Lqqy~ 243 (617)
T PF15070_consen 164 ELKEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLELKSQEAQSLQEQRDQYLGHLQQYV 243 (617)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 678888887 88999999985 3444555555554555555532 234688889999998887777666665543
Q ss_pred HHHHHHHHHHHhhHH
Q 023064 157 VENQIWRDLAQTNEA 171 (288)
Q Consensus 157 ~E~qaWq~~A~~nEa 171 (288)
+ +||.++.++|+
T Consensus 244 a---~~q~l~~e~e~ 255 (617)
T PF15070_consen 244 A---AYQQLASEKEE 255 (617)
T ss_pred H---HHHHHHHHHHH
Confidence 2 34555555544
No 85
>PRK10884 SH3 domain-containing protein; Provisional
Probab=67.48 E-value=48 Score=30.25 Aligned_cols=33 Identities=15% Similarity=0.182 Sum_probs=18.2
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023064 129 NKLKEKDEEIHRMRKLNWVLQERVKSLFVENQI 161 (288)
Q Consensus 129 ~rLReKe~Eie~a~r~n~eLEErlrql~~E~qa 161 (288)
.++.+.+.++..+..+|.+|.+.+..+..|++.
T Consensus 125 ~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~ 157 (206)
T PRK10884 125 QKVAQSDSVINGLKEENQKLKNQLIVAQKKVDA 157 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555666666666666666665555443
No 86
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=66.78 E-value=53 Score=25.72 Aligned_cols=39 Identities=28% Similarity=0.305 Sum_probs=31.6
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023064 128 ANKLKEKDEEIHRMRKLNWVLQERVKSLFVENQIWRDLA 166 (288)
Q Consensus 128 ~~rLReKe~Eie~a~r~n~eLEErlrql~~E~qaWq~~A 166 (288)
-.+|+.|++||++.+.....|..+|.....-+---++..
T Consensus 11 ~~kL~~K~eEI~rLn~lv~sLR~KLiKYt~LnkkLq~~~ 49 (76)
T PF11544_consen 11 KKKLNDKQEEIDRLNILVGSLRGKLIKYTELNKKLQDQL 49 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999987776665554443
No 87
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=66.60 E-value=3.2 Score=39.14 Aligned_cols=48 Identities=27% Similarity=0.496 Sum_probs=25.6
Q ss_pred cccccccccccceEEeCC-----CCcccCcchhhhc---CCCCccccccccceEEEe
Q 023064 238 MLCRRCGEKESSVLLLPC-----RHLCLCTVCGSCL---IGSCPVCNFVVDASLHVN 286 (288)
Q Consensus 238 ~~C~iC~~~~~~vlLlPC-----rHlclC~~C~~~l---~~~CPvCr~~i~~~v~V~ 286 (288)
..|++|+..+.-.+|.+= ||+ .|..|.... -..||.|.......++.|
T Consensus 173 g~CPvCGs~P~~s~l~~~~~~G~R~L-~Cs~C~t~W~~~R~~Cp~Cg~~~~~~l~~~ 228 (290)
T PF04216_consen 173 GYCPVCGSPPVLSVLRGGEREGKRYL-HCSLCGTEWRFVRIKCPYCGNTDHEKLEYF 228 (290)
T ss_dssp SS-TTT---EEEEEEE------EEEE-EETTT--EEE--TTS-TTT---SS-EEE--
T ss_pred CcCCCCCCcCceEEEecCCCCccEEE-EcCCCCCeeeecCCCCcCCCCCCCcceeeE
Confidence 379999999888888765 333 699998776 678999998887777665
No 88
>smart00338 BRLZ basic region leucin zipper.
Probab=66.33 E-value=48 Score=24.11 Aligned_cols=30 Identities=17% Similarity=0.200 Sum_probs=14.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023064 133 EKDEEIHRMRKLNWVLQERVKSLFVENQIW 162 (288)
Q Consensus 133 eKe~Eie~a~r~n~eLEErlrql~~E~qaW 162 (288)
+.+.+++.+...|.+|...+.++..|.+..
T Consensus 30 ~Le~~~~~L~~en~~L~~~~~~l~~e~~~l 59 (65)
T smart00338 30 ELERKVEQLEAENERLKKEIERLRRELEKL 59 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555555554444
No 89
>PRK10920 putative uroporphyrinogen III C-methyltransferase; Provisional
Probab=66.22 E-value=72 Score=31.95 Aligned_cols=84 Identities=14% Similarity=0.175 Sum_probs=48.5
Q ss_pred chHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 023064 78 LDQDIIFRLQQQQSEIDRYIAQHTEKVILELEEQRKRQSRMLISAIQEGVANKLKEKDEEIHRMRKLNWVLQERVKSLFV 157 (288)
Q Consensus 78 ~~~~l~~~l~~Q~~EiD~~i~~q~Erlr~~L~e~r~r~~r~ll~avE~~~~~rLReKe~Eie~a~r~n~eLEErlrql~~ 157 (288)
+|.++.++-++|..+...-+..-..+|.....+..+.+.. + .........++.+.+.++........+|++++..+..
T Consensus 50 ~g~g~y~~~~qq~~~~~~~~~~L~~ql~~~~~~~~~~~~~-l-~~~~~~~~~~l~~~e~~~~~l~~q~~~Lq~~~~~ls~ 127 (390)
T PRK10920 50 AGAGLYYHGKQQAQNQTATNDALANQLTALQKAQESQKQE-L-EGILKQQAKALDQANRQQAALAKQLDELQQKVATISG 127 (390)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4555655545555455444443344444443333322222 2 2233344566777788888889999999999988775
Q ss_pred HH-HHHH
Q 023064 158 EN-QIWR 163 (288)
Q Consensus 158 E~-qaWq 163 (288)
.. ..|.
T Consensus 128 ~~~~dWl 134 (390)
T PRK10920 128 SDAKTWL 134 (390)
T ss_pred CChhhHH
Confidence 44 6664
No 90
>PF13935 Ead_Ea22: Ead/Ea22-like protein
Probab=65.70 E-value=62 Score=27.40 Aligned_cols=56 Identities=21% Similarity=0.283 Sum_probs=34.0
Q ss_pred HhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhH----HHHHHhhHHHHHHHHHHHHHHH
Q 023064 87 QQQQSEIDRYIAQHTEKVILELEEQRKRQSRMLISAIQEGV----ANKLKEKDEEIHRMRKLNWVLQ 149 (288)
Q Consensus 87 ~~Q~~EiD~~i~~q~Erlr~~L~e~r~r~~r~ll~avE~~~----~~rLReKe~Eie~a~r~n~eLE 149 (288)
++...++|+. .+++.++..+.+.|. -|.+++..+ ..+--..+..|..+.++.+|||
T Consensus 80 ~~~i~~~~~~--~e~~~~a~~~~~l~~-----~Le~ae~~~~~~~~~~~~~~e~~~~~~~~riaEle 139 (139)
T PF13935_consen 80 QQRIAELEQE--CENEDIALDVQKLRV-----ELEAAEKRIAAELAEQAEAYEGEIADYAKRIAELE 139 (139)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcC
Confidence 4445566666 567777777777665 334444333 3334455677777777777775
No 91
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=65.59 E-value=1.9e+02 Score=31.32 Aligned_cols=73 Identities=19% Similarity=0.204 Sum_probs=40.5
Q ss_pred HHHhhhHHHHHH------HHHhHHHHHHHHH----------HHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHH
Q 023064 85 RLQQQQSEIDRY------IAQHTEKVILELE----------EQRKRQSRMLISAIQEGVANKLKEKDEEIHRMRKLNWVL 148 (288)
Q Consensus 85 ~l~~Q~~EiD~~------i~~q~Erlr~~L~----------e~r~r~~r~ll~avE~~~~~rLReKe~Eie~a~r~n~eL 148 (288)
.|..|-.|++++ -+.+.|.||.+|. |..+|....+-..=+.-+..--.+-.+++...+.+..+|
T Consensus 95 rLe~qa~Ele~l~~ae~agraEae~Lraala~ae~~R~~lEE~~q~ELee~q~~Hqeql~~Lt~aHq~~l~sL~~k~~~L 174 (739)
T PF07111_consen 95 RLEAQAEELEALARAEKAGRAEAEELRAALAGAEVVRKNLEEGSQRELEEAQRLHQEQLSSLTQAHQEALASLTSKAEEL 174 (739)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788899988 5666777774332 222222211111111122222233346777888888888
Q ss_pred HHHHHHHHH
Q 023064 149 QERVKSLFV 157 (288)
Q Consensus 149 EErlrql~~ 157 (288)
++++..+..
T Consensus 175 e~~L~~le~ 183 (739)
T PF07111_consen 175 EKSLESLET 183 (739)
T ss_pred HHHHHHHHH
Confidence 888876665
No 92
>PRK09039 hypothetical protein; Validated
Probab=65.48 E-value=1.4e+02 Score=29.13 Aligned_cols=51 Identities=14% Similarity=0.143 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHh
Q 023064 136 EEIHRMRKLNWVLQERVKSLFVENQIWRDLAQTNEATANTLRSNLEQVLAH 186 (288)
Q Consensus 136 ~Eie~a~r~n~eLEErlrql~~E~qaWq~~A~~nEa~A~~Lra~L~q~l~q 186 (288)
.++.+++.+...|++++.++..+-.+=...-++.+.....|...|+.++++
T Consensus 137 ~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~ 187 (343)
T PRK09039 137 AQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQ 187 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666777777777777777777777777777788888888888888866
No 93
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=65.17 E-value=71 Score=31.42 Aligned_cols=21 Identities=24% Similarity=0.178 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 023064 145 NWVLQERVKSLFVENQIWRDL 165 (288)
Q Consensus 145 n~eLEErlrql~~E~qaWq~~ 165 (288)
...||+..|+|..|..+++.+
T Consensus 379 k~kle~~rr~Leee~~~f~~r 399 (406)
T KOG3859|consen 379 KKKLEEKRKQLEEEVNAFQRR 399 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666554
No 94
>PRK11637 AmiB activator; Provisional
Probab=64.85 E-value=1.5e+02 Score=29.33 Aligned_cols=16 Identities=25% Similarity=0.193 Sum_probs=8.0
Q ss_pred HHHHHHHHhhhHHHHH
Q 023064 80 QDIIFRLQQQQSEIDR 95 (288)
Q Consensus 80 ~~l~~~l~~Q~~EiD~ 95 (288)
+++..++++.+.+|+.
T Consensus 43 ~~~~~~l~~l~~qi~~ 58 (428)
T PRK11637 43 SDNRDQLKSIQQDIAA 58 (428)
T ss_pred hhhHHHHHHHHHHHHH
Confidence 4454555555555544
No 95
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=64.69 E-value=1.2e+02 Score=28.22 Aligned_cols=83 Identities=22% Similarity=0.297 Sum_probs=41.6
Q ss_pred chHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 023064 78 LDQDIIFRLQQQQSEIDRYIAQHTEKVILELEEQRKRQSRMLISAIQEGVANKLKEKDEEIHRMRKLNWVLQERVKSLFV 157 (288)
Q Consensus 78 ~~~~l~~~l~~Q~~EiD~~i~~q~Erlr~~L~e~r~r~~r~ll~avE~~~~~rLReKe~Eie~a~r~n~eLEErlrql~~ 157 (288)
|.+-|+..|++= ++|..++.+|...|...+.+..... +-+....-.-|++.-..|+.+...+..|+-.+..+..
T Consensus 9 LNdRla~YIekV-----r~LE~~N~~Le~~i~~~~~~~~~~~-~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~ 82 (312)
T PF00038_consen 9 LNDRLASYIEKV-----RFLEQENKRLESEIEELREKKGEEV-SRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKE 82 (312)
T ss_dssp HHHHHHHHHHHH-----HHHHHHHHHHHHHHHH----------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-----HHHHHHhhhhHHHHHHHHhcccccC-cccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHH
Confidence 455555554432 4566667777777766665532221 2223333333444445666666666666666666666
Q ss_pred HHHHHHHHH
Q 023064 158 ENQIWRDLA 166 (288)
Q Consensus 158 E~qaWq~~A 166 (288)
|...++...
T Consensus 83 e~~~~r~k~ 91 (312)
T PF00038_consen 83 ELEDLRRKY 91 (312)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666665543
No 96
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=64.67 E-value=3 Score=29.82 Aligned_cols=25 Identities=28% Similarity=0.695 Sum_probs=12.4
Q ss_pred CCCCcccCcchhhhc----CCCCccccccc
Q 023064 254 PCRHLCLCTVCGSCL----IGSCPVCNFVV 279 (288)
Q Consensus 254 PCrHlclC~~C~~~l----~~~CPvCr~~i 279 (288)
||++. +|..|...+ ...||.||.+.
T Consensus 19 ~Cgf~-IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 19 ECGFQ-ICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp TTS-----HHHHHHHTTSS-SB-TTT--B-
T ss_pred cCCCc-HHHHHHHHHHhccCCCCCCCCCCC
Confidence 45665 899997665 57899999864
No 97
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=64.63 E-value=1.4e+02 Score=33.49 Aligned_cols=48 Identities=25% Similarity=0.316 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhhHHHHHHHHHhHHHH
Q 023064 136 EEIHRMRKLNWVLQERVKSLFVEN-------QIWRDLAQTNEATANTLRSNLEQV 183 (288)
Q Consensus 136 ~Eie~a~r~n~eLEErlrql~~E~-------qaWq~~A~~nEa~A~~Lra~L~q~ 183 (288)
+=++...-+|.+|||||++|+-|. +.--.++.+|......||.+|+++
T Consensus 448 ~MV~qLtdknlnlEekVklLeetv~dlEalee~~EQL~Esn~ele~DLreEld~~ 502 (1243)
T KOG0971|consen 448 EMVEQLTDKNLNLEEKVKLLEETVGDLEALEEMNEQLQESNRELELDLREELDMA 502 (1243)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666788888888888776654 445556777888888899988887
No 98
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=64.16 E-value=1.9e+02 Score=30.34 Aligned_cols=75 Identities=17% Similarity=0.225 Sum_probs=46.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 023064 100 HTEKVILELEEQRKRQSRMLISAIQEGVANKLKEKDEEIHRMRKLNWVLQERVKSLFVENQIWRDLAQTNEATANTL 176 (288)
Q Consensus 100 q~Erlr~~L~e~r~r~~r~ll~avE~~~~~rLReKe~Eie~a~r~n~eLEErlrql~~E~qaWq~~A~~nEa~A~~L 176 (288)
++++|...|...++. +..|....+. +.........|.+.+..++.++.+|++++..+...+....++++..-..|
T Consensus 172 ~v~~l~~eL~~~~ee-~e~L~~~~ke-l~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi~~l~qk~~E~e~~~~~l 246 (546)
T PF07888_consen 172 EVERLEAELEQEEEE-MEQLKQQQKE-LTESSEELKEERESLKEQLAEARQRIRELEEDIKTLTQKEKEQEKELDKL 246 (546)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555543 3344443332 22334445567788888888888888888888888877776665444433
No 99
>PF05121 GvpK: Gas vesicle protein K ; InterPro: IPR007805 Gas vesicles are intracellular, protein-coated, and hollow organelles found in cyanobacteria and halophilic archaea. They are permeable to ambient gases by diffusion and provide buoyancy, enabling cells to move upwards in liquid to access oxygen and/or light. Proteins containing this domain are involved in the formation of gas vesicles [].; GO: 0031412 gas vesicle organization
Probab=63.45 E-value=41 Score=27.04 Aligned_cols=38 Identities=16% Similarity=0.313 Sum_probs=29.2
Q ss_pred HHHHHhHHHHHHh---hHHHHHHHHHHHHHHHHHHHHHHHH
Q 023064 121 SAIQEGVANKLKE---KDEEIHRMRKLNWVLQERVKSLFVE 158 (288)
Q Consensus 121 ~avE~~~~~rLRe---Ke~Eie~a~r~n~eLEErlrql~~E 158 (288)
..+|+.+.+|+-. -++|||++..-.+.||+++.+++..
T Consensus 27 qlmErQAiRRme~G~Lse~qiErlG~tLm~Le~~~~~l~~~ 67 (88)
T PF05121_consen 27 QLMERQAIRRMEAGSLSEEQIERLGETLMKLEEAMEELCER 67 (88)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666544 3599999999999999999888754
No 100
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=63.34 E-value=27 Score=28.42 Aligned_cols=37 Identities=16% Similarity=0.143 Sum_probs=29.8
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023064 129 NKLKEKDEEIHRMRKLNWVLQERVKSLFVENQIWRDL 165 (288)
Q Consensus 129 ~rLReKe~Eie~a~r~n~eLEErlrql~~E~qaWq~~ 165 (288)
.++++...+++.+..+|.+|+++-.+|..|-..|+.-
T Consensus 27 ~~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~ 63 (105)
T PRK00888 27 LDYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGG 63 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Confidence 3677777888888888888888888888888888763
No 101
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=62.98 E-value=75 Score=25.18 Aligned_cols=40 Identities=15% Similarity=0.139 Sum_probs=33.1
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 023064 132 KEKDEEIHRMRKLNWVLQERVKSLFVENQIWRDLAQTNEA 171 (288)
Q Consensus 132 ReKe~Eie~a~r~n~eLEErlrql~~E~qaWq~~A~~nEa 171 (288)
.+.++||+++...-..|.+.+-+..+.+..|.....+-..
T Consensus 35 ~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~ 74 (89)
T PF13747_consen 35 DELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSR 74 (89)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 4667899999999999999999999999999887544433
No 102
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=62.91 E-value=35 Score=32.96 Aligned_cols=31 Identities=23% Similarity=0.246 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023064 136 EEIHRMRKLNWVLQERVKSLFVENQIWRDLA 166 (288)
Q Consensus 136 ~Eie~a~r~n~eLEErlrql~~E~qaWq~~A 166 (288)
-|++-..++|.+|-+++..++-|-+--+..-
T Consensus 255 ge~~~Le~rN~~LK~qa~~lerEI~ylKqli 285 (294)
T KOG4571|consen 255 GELEGLEKRNEELKDQASELEREIRYLKQLI 285 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666677788888888777777766555443
No 103
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=62.48 E-value=65 Score=35.02 Aligned_cols=86 Identities=23% Similarity=0.278 Sum_probs=63.3
Q ss_pred HHHHhHHHHHHHHHHHHHH------HHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023064 96 YIAQHTEKVILELEEQRKR------QSRMLISAIQEGVANKLKEKDEEIHRMRKLNWVLQERVKSLFVENQIWRDLAQTN 169 (288)
Q Consensus 96 ~i~~q~Erlr~~L~e~r~r------~~r~ll~avE~~~~~rLReKe~Eie~a~r~n~eLEErlrql~~E~qaWq~~A~~n 169 (288)
=+..+++++-..|+..|+| |...|...+++...--+++--+-++++++...+++---+|+.+-..+-.+....+
T Consensus 167 kl~~~~qe~naeL~rarqreemneeh~~rlsdtvdErlqlhlkermaAle~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~ 246 (916)
T KOG0249|consen 167 KLEEQLEELNAELQRARQREKMNEEHNKRLSDTVDERLQLHLKERMAALEDKNRLEQELESVKKQLEEMRHDKDKLRTDI 246 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 3456788888889888887 6777888888776666777777778888877777776677766666666666666
Q ss_pred HHHHHHHHHhHHHHHH
Q 023064 170 EATANTLRSNLEQVLA 185 (288)
Q Consensus 170 Ea~A~~Lra~L~q~l~ 185 (288)
|. |+..++|+-.
T Consensus 247 E~----Lr~e~~qL~~ 258 (916)
T KOG0249|consen 247 ED----LRGELDQLRR 258 (916)
T ss_pred HH----HHHHHHHHHH
Confidence 64 7777777764
No 104
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=62.45 E-value=65 Score=34.26 Aligned_cols=27 Identities=26% Similarity=0.406 Sum_probs=12.3
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 023064 129 NKLKEKDEEIHRMRKLNWVLQERVKSL 155 (288)
Q Consensus 129 ~rLReKe~Eie~a~r~n~eLEErlrql 155 (288)
+.++++|.+|++++++..+=..++.+|
T Consensus 474 rei~~~~~~I~~L~~~L~e~~~~ve~L 500 (652)
T COG2433 474 REIRARDRRIERLEKELEEKKKRVEEL 500 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555555554444433333333
No 105
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=62.37 E-value=1.5e+02 Score=34.19 Aligned_cols=89 Identities=25% Similarity=0.342 Sum_probs=46.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 023064 92 EIDRYIAQHTEKVILELEEQRKRQSRMLISAIQEGVANKLKEKDEEIHRMRKLNWVLQERVKSLFVENQIWRDLAQTNEA 171 (288)
Q Consensus 92 EiD~~i~~q~Erlr~~L~e~r~r~~r~ll~avE~~~~~rLReKe~Eie~a~r~n~eLEErlrql~~E~qaWq~~A~~nEa 171 (288)
++|.=+....++++....+..+ ..++|+--=-.-+..++.+.++++..+.+++.+|++.++-+...++. +.....
T Consensus 465 ~~~keL~e~i~~lk~~~~el~~-~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~----~~~~~~ 539 (1317)
T KOG0612|consen 465 EMDKELEETIEKLKSEESELQR-EQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDN----AADSLE 539 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHh
Confidence 4444455555666555555554 22222221112233456666666666666666666666655443333 233355
Q ss_pred HHHHHHHhHHHHHH
Q 023064 172 TANTLRSNLEQVLA 185 (288)
Q Consensus 172 ~A~~Lra~L~q~l~ 185 (288)
.++.|+.+|+....
T Consensus 540 kv~~~rk~le~~~~ 553 (1317)
T KOG0612|consen 540 KVNSLRKQLEEAEL 553 (1317)
T ss_pred hHHHHHHHHHHhhh
Confidence 56677777775443
No 106
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=61.74 E-value=68 Score=24.25 Aligned_cols=83 Identities=22% Similarity=0.309 Sum_probs=45.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHhhHHH
Q 023064 99 QHTEKVILELEEQRKRQSRMLISAIQEGVANKLKEKDEEIHRMRKLNWVLQERVKSLFVENQ------IWRDLAQTNEAT 172 (288)
Q Consensus 99 ~q~Erlr~~L~e~r~r~~r~ll~avE~~~~~rLReKe~Eie~a~r~n~eLEErlrql~~E~q------aWq~~A~~nEa~ 172 (288)
...+++...+.+-++.|.+.|...... ..-=++-+.=...+++....+..+|+++..... .+....+-....
T Consensus 14 ~~i~~i~~~~~~l~~l~~~~l~~~~~d--~~~~~el~~l~~~i~~~~~~~~~~lk~l~~~~~~~~~~~~~~~~~ri~~nq 91 (103)
T PF00804_consen 14 EDIDKIKEKLNELRKLHKKILSSPDQD--SELKRELDELTDEIKQLFQKIKKRLKQLSKDNEDSEGEEPSSNEVRIRKNQ 91 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSSSHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT--SHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCcc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcHHHHHHHHH
Confidence 344566667777777777666655532 111133334445567777788888888887754 233334444444
Q ss_pred HHHHHHhHHHH
Q 023064 173 ANTLRSNLEQV 183 (288)
Q Consensus 173 A~~Lra~L~q~ 183 (288)
..+|...++.+
T Consensus 92 ~~~L~~kf~~~ 102 (103)
T PF00804_consen 92 VQALSKKFQEV 102 (103)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44455444443
No 107
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=60.97 E-value=3.5 Score=29.65 Aligned_cols=43 Identities=21% Similarity=0.628 Sum_probs=25.3
Q ss_pred ccccccccccceEEeCCCCcccCcchhhhc---CCCCccccccccceE
Q 023064 239 LCRRCGEKESSVLLLPCRHLCLCTVCGSCL---IGSCPVCNFVVDASL 283 (288)
Q Consensus 239 ~C~iC~~~~~~vlLlPCrHlclC~~C~~~l---~~~CPvCr~~i~~~v 283 (288)
.|+.|.-.....+- |.---+|..|-..| ...||+|..+....|
T Consensus 4 nCKsCWf~~k~Li~--C~dHYLCl~CLt~ml~~s~~C~iC~~~LPtki 49 (50)
T PF03854_consen 4 NCKSCWFANKGLIK--CSDHYLCLNCLTLMLSRSDRCPICGKPLPTKI 49 (50)
T ss_dssp ---SS-S--SSEEE---SS-EEEHHHHHHT-SSSSEETTTTEE----S
T ss_pred cChhhhhcCCCeee--ecchhHHHHHHHHHhccccCCCcccCcCcccc
Confidence 58999887776554 76555999999887 789999998876654
No 108
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=60.93 E-value=78 Score=24.69 Aligned_cols=54 Identities=19% Similarity=0.391 Sum_probs=32.8
Q ss_pred HHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHH
Q 023064 82 IIFRLQQQQSEIDRYIAQHTEKVILELEEQRKRQSRMLISAIQEGVANKLKEKDEEIH 139 (288)
Q Consensus 82 l~~~l~~Q~~EiD~~i~~q~Erlr~~L~e~r~r~~r~ll~avE~~~~~rLReKe~Eie 139 (288)
....++.+...+-.-|..+.++|+..|++.+ ..++.-++..-..++...++.++
T Consensus 29 ~~~~l~~~~~~~~~~I~~~f~~l~~~L~~~e----~~ll~~l~~~~~~~~~~l~~q~~ 82 (127)
T smart00502 29 IIQEVEENAADVEAQIKAAFDELRNALNKRK----KQLLEDLEEQKENKLKVLEQQLE 82 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777777777777888888888777 44555555444444333333333
No 109
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=60.92 E-value=3.6 Score=26.98 Aligned_cols=16 Identities=19% Similarity=0.461 Sum_probs=13.0
Q ss_pred CCCCccccccccceEE
Q 023064 269 IGSCPVCNFVVDASLH 284 (288)
Q Consensus 269 ~~~CPvCr~~i~~~v~ 284 (288)
...||+|..+...+.+
T Consensus 18 p~~CP~Cg~~~~~F~~ 33 (34)
T cd00729 18 PEKCPICGAPKEKFEE 33 (34)
T ss_pred CCcCcCCCCchHHcEE
Confidence 5799999998777654
No 110
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=60.66 E-value=1.7e+02 Score=30.42 Aligned_cols=60 Identities=28% Similarity=0.411 Sum_probs=38.5
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHH----HHHH-------H----HHHHHHHHhhHHHHHHHHHhHHHHHHhc
Q 023064 128 ANKLKEKDEEIHRMRKLNWVLQERVKS----LFVE-------N----QIWRDLAQTNEATANTLRSNLEQVLAHV 187 (288)
Q Consensus 128 ~~rLReKe~Eie~a~r~n~eLEErlrq----l~~E-------~----qaWq~~A~~nEa~A~~Lra~L~q~l~q~ 187 (288)
-+-|-+||+||+|+.....+||.-... |..| - ..+|+.-++|.+----|++.|+.+++|+
T Consensus 452 dk~LskKeeeverLQ~lkgelEkat~SALdlLkrEKe~~EqefLslqeEfQk~ekenl~ERqkLKs~leKLvaqv 526 (527)
T PF15066_consen 452 DKTLSKKEEEVERLQQLKGELEKATTSALDLLKREKETREQEFLSLQEEFQKHEKENLEERQKLKSRLEKLVAQV 526 (527)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhc
Confidence 366899999999999999899853321 1111 1 1244444555555566777777777664
No 111
>PRK04863 mukB cell division protein MukB; Provisional
Probab=60.65 E-value=3.1e+02 Score=32.34 Aligned_cols=31 Identities=13% Similarity=0.071 Sum_probs=13.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023064 133 EKDEEIHRMRKLNWVLQERVKSLFVENQIWR 163 (288)
Q Consensus 133 eKe~Eie~a~r~n~eLEErlrql~~E~qaWq 163 (288)
+.+++++.+..+..++++.+..+..+-+.|+
T Consensus 366 e~eeeLeeleeeleeleeEleelEeeLeeLq 396 (1486)
T PRK04863 366 EQNEVVEEADEQQEENEARAEAAEEEVDELK 396 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444443
No 112
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=60.54 E-value=76 Score=24.47 Aligned_cols=20 Identities=25% Similarity=0.232 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 023064 137 EIHRMRKLNWVLQERVKSLF 156 (288)
Q Consensus 137 Eie~a~r~n~eLEErlrql~ 156 (288)
.+.+++.++.+||.||..|+
T Consensus 58 ~L~~~r~kl~~LEarl~~LE 77 (79)
T PF04380_consen 58 VLARTREKLEALEARLAALE 77 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 45556666666776666554
No 113
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=59.88 E-value=2.5e+02 Score=30.26 Aligned_cols=38 Identities=21% Similarity=0.225 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHH
Q 023064 148 LQERVKSLFVENQIWRDLAQTNEATANTLRSNLEQVLA 185 (288)
Q Consensus 148 LEErlrql~~E~qaWq~~A~~nEa~A~~Lra~L~q~l~ 185 (288)
+..|.++|+.|...-+...+..|.....|..+++++..
T Consensus 543 ~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~ 580 (697)
T PF09726_consen 543 CRQRRRQLESELKKLRRELKQKEEQIRELESELQELRK 580 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666666666666666666666654443
No 114
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=59.10 E-value=36 Score=31.68 Aligned_cols=44 Identities=18% Similarity=0.164 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 023064 135 DEEIHRMRKLNWVLQERVKSLFVENQIWRDLAQTNEATANTLRS 178 (288)
Q Consensus 135 e~Eie~a~r~n~eLEErlrql~~E~qaWq~~A~~nEa~A~~Lra 178 (288)
..++.+...+...|++.++++..|..--...+.+-+.+...|+.
T Consensus 25 ~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~ 68 (246)
T PF00769_consen 25 QEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEE 68 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555666677777777777777766666666655555543
No 115
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=58.67 E-value=74 Score=29.20 Aligned_cols=59 Identities=27% Similarity=0.306 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 023064 101 TEKVILELEEQRKRQSRMLISAIQEGVANKLKEKDEEIHRMRKLNWVLQERVKSLFVENQIWRDLAQTNEATAN 174 (288)
Q Consensus 101 ~Erlr~~L~e~r~r~~r~ll~avE~~~~~rLReKe~Eie~a~r~n~eLEErlrql~~E~qaWq~~A~~nEa~A~ 174 (288)
.++-|..|+|+||.- |-.+++ |.+++.+.+-.+++-++.|..|+..-+.+|..-+.+|.
T Consensus 105 se~YWk~lAE~RR~A---L~eaL~------------ENe~Lh~~ie~~~eEi~~lk~en~~L~elae~~~~la~ 163 (200)
T PF07412_consen 105 SENYWKELAEERRKA---LEEALE------------ENEKLHKEIEQKDEEIAKLKEENEELKELAEHVQYLAE 163 (200)
T ss_dssp CHHHHHHHHHHHHHH---HHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH---HHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678899999998643 333333 44445555555666666666666666666655555553
No 116
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=57.68 E-value=1.2 Score=43.78 Aligned_cols=46 Identities=20% Similarity=0.428 Sum_probs=36.1
Q ss_pred Ccccccccccc-ccceEEeCCCCcccCcchhhhc----CCCCccccccccce
Q 023064 236 GRMLCRRCGEK-ESSVLLLPCRHLCLCTVCGSCL----IGSCPVCNFVVDAS 282 (288)
Q Consensus 236 ~~~~C~iC~~~-~~~vlLlPCrHlclC~~C~~~l----~~~CPvCr~~i~~~ 282 (288)
....|.||.+- ...+...-|.|. +|..|.+.. ...||.||....+.
T Consensus 42 ~~v~c~icl~llk~tmttkeClhr-fc~~ci~~a~r~gn~ecptcRk~l~Sk 92 (381)
T KOG0311|consen 42 IQVICPICLSLLKKTMTTKECLHR-FCFDCIWKALRSGNNECPTCRKKLVSK 92 (381)
T ss_pred hhhccHHHHHHHHhhcccHHHHHH-HHHHHHHHHHHhcCCCCchHHhhcccc
Confidence 44589999984 445566679999 899998875 69999999876543
No 117
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=57.48 E-value=1.2e+02 Score=33.31 Aligned_cols=58 Identities=26% Similarity=0.450 Sum_probs=36.2
Q ss_pred hHHHHHHHHHHHHH--HHHHHHHHHHH--Hh-HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 023064 100 HTEKVILELEEQRK--RQSRMLISAIQ--EG-VANKLKEKDEEIHRMRKLNWVLQERVKSLFV 157 (288)
Q Consensus 100 q~Erlr~~L~e~r~--r~~r~ll~avE--~~-~~~rLReKe~Eie~a~r~n~eLEErlrql~~ 157 (288)
++.|++..++|+-. .+..-=|.++| -. ..--||++|+||+|++-.+.-|+-.++++-.
T Consensus 495 e~~rik~ev~eal~~~k~~q~kLe~sekEN~iL~itlrQrDaEi~RL~eLtR~LQ~Sma~lL~ 557 (861)
T PF15254_consen 495 ETTRIKIEVEEALVNVKSLQFKLEASEKENQILGITLRQRDAEIERLRELTRTLQNSMAKLLS 557 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46666666666542 12222233333 12 2334889999999999888888888777754
No 118
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=57.45 E-value=2.8e+02 Score=30.86 Aligned_cols=27 Identities=33% Similarity=0.455 Sum_probs=14.0
Q ss_pred hhHHHHHHHHHh----HHHHHHHHHHHHHHH
Q 023064 89 QQSEIDRYIAQH----TEKVILELEEQRKRQ 115 (288)
Q Consensus 89 Q~~EiD~~i~~q----~Erlr~~L~e~r~r~ 115 (288)
|-.|..++.++| .||-|++-+|+|+|.
T Consensus 919 ~~~e~er~rk~qE~~E~ER~rrEaeek~rre 949 (1259)
T KOG0163|consen 919 QIEELERLRKIQELAEAERKRREAEEKRRRE 949 (1259)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 344444554443 455555566665554
No 119
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=57.14 E-value=80 Score=27.03 Aligned_cols=70 Identities=27% Similarity=0.356 Sum_probs=39.3
Q ss_pred HHHHHHHHhhhHHHHHHHHHh------HHHHHHHHHHHHHHHHHHHHHHHHHhHH---HHHHhhHHHHHHHHHHHHHHHH
Q 023064 80 QDIIFRLQQQQSEIDRYIAQH------TEKVILELEEQRKRQSRMLISAIQEGVA---NKLKEKDEEIHRMRKLNWVLQE 150 (288)
Q Consensus 80 ~~l~~~l~~Q~~EiD~~i~~q------~Erlr~~L~e~r~r~~r~ll~avE~~~~---~rLReKe~Eie~a~r~n~eLEE 150 (288)
.-+.++|++=..==+.|.+-+ ...|-..++|+| +++..-|..+- ..++.||.||..++.+..++.-
T Consensus 48 ~~vVsEL~~Ls~LK~~y~~~~~~~~~~~~~l~a~~~e~q-----sli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~ 122 (131)
T PF04859_consen 48 EAVVSELRRLSELKRRYRKKQSDPSPQVARLAAEIQEQQ-----SLIKTYEIVVKKLEAELRAKDSEIDRLREKLDELNR 122 (131)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCccccccccchHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556655544444454433 234455555544 45555443332 4578899998888877766665
Q ss_pred HHHH
Q 023064 151 RVKS 154 (288)
Q Consensus 151 rlrq 154 (288)
.-+.
T Consensus 123 ~n~~ 126 (131)
T PF04859_consen 123 ANKS 126 (131)
T ss_pred HHHH
Confidence 4433
No 120
>PF11500 Cut12: Spindle pole body formation-associated protein; InterPro: IPR021589 This is the central coiled-coil region of cut12 also found in other fungi, barring S. cerevisiae. The full protein has two predicted coiled-coil regions, and one consensus phosphorylation site for p34cdc2 and two for MAP kinase. During Schizosaccharomyces japonicus yFS275 mitosis, the duplicated spindle pole bodies (SPBs) nucleate microtubule arrays that interdigitate to form the mitotic spindle. Cut12 is localised to the SPB throughout the cell cycle, predominantly around the inner face of the interphase SPB, adjacent to the nucleus []. Cut12 associates with Fin1 and is important in this context for the activity of Plo1 [].
Probab=56.72 E-value=1e+02 Score=27.03 Aligned_cols=25 Identities=32% Similarity=0.264 Sum_probs=22.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHH
Q 023064 132 KEKDEEIHRMRKLNWVLQERVKSLF 156 (288)
Q Consensus 132 ReKe~Eie~a~r~n~eLEErlrql~ 156 (288)
+.||.|..++..+..+-+++++++.
T Consensus 101 kkKD~Ea~~L~~KLkeEq~kv~~ME 125 (152)
T PF11500_consen 101 KKKDAEAMRLAEKLKEEQEKVAEME 125 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999998887765
No 121
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=55.85 E-value=73 Score=36.00 Aligned_cols=55 Identities=22% Similarity=0.166 Sum_probs=34.6
Q ss_pred HHHHHhHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 023064 121 SAIQEGVANKLKEKDEEIHRMRK-LNWVLQERVKSLFVENQIWRDLAQTNEATANTLRS 178 (288)
Q Consensus 121 ~avE~~~~~rLReKe~Eie~a~r-~n~eLEErlrql~~E~qaWq~~A~~nEa~A~~Lra 178 (288)
..+|..-..+|++|-+|.++.-+ .+..|||||+.+..=+++-|.- -|.+..++.+
T Consensus 381 ~~ae~~~~~el~e~l~esekli~ei~~twEEkl~ktE~in~erq~~---L~~~gis~~~ 436 (1714)
T KOG0241|consen 381 EQAEAMKLPELKEKLEESEKLIKEITVTWEEKLRKTEEINQERQAQ---LESMGISLEN 436 (1714)
T ss_pred hhhhhccchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH---HHHHHHHHhc
Confidence 33555556778888888887643 4567899988877666655543 3444444443
No 122
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=55.72 E-value=41 Score=27.40 Aligned_cols=38 Identities=11% Similarity=0.123 Sum_probs=25.1
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023064 129 NKLKEKDEEIHRMRKLNWVLQERVKSLFVENQIWRDLA 166 (288)
Q Consensus 129 ~rLReKe~Eie~a~r~n~eLEErlrql~~E~qaWq~~A 166 (288)
+.+.+.+.|++++..+|.+|.+.+..+...-..=...|
T Consensus 34 ~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiEe~A 71 (105)
T PRK00888 34 DQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAIEERA 71 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHH
Confidence 44566667788888888888888887775334433333
No 123
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=55.22 E-value=2e+02 Score=31.35 Aligned_cols=57 Identities=19% Similarity=0.277 Sum_probs=37.0
Q ss_pred HHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHH
Q 023064 123 IQEGVANKLKEKDEEIHRMRKLNWVLQERVKSLFVENQIWRDLAQTNEATANTLRSNLEQ 182 (288)
Q Consensus 123 vE~~~~~rLReKe~Eie~a~r~n~eLEErlrql~~E~qaWq~~A~~nEa~A~~Lra~L~q 182 (288)
....+.++||+|+-|-+.+-.|+.+ .|..|.-|-+.-..+-...|+|-..++-++..
T Consensus 471 ~qs~iIkKLRAk~ke~etl~~K~ge---~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k 527 (961)
T KOG4673|consen 471 AQSAIIKKLRAKIKEAETLEEKKGE---LITKLQSEENKLKSILRDKEETEKLLQETIEK 527 (961)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHhhh---HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3467889999999888877666543 34555556666666656666665555555443
No 124
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=54.53 E-value=1.8e+02 Score=26.86 Aligned_cols=76 Identities=24% Similarity=0.307 Sum_probs=55.5
Q ss_pred HHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHhHHHHHH---------------hhHHHHHHHHHHHHHHHHHHHH
Q 023064 93 IDRYIAQHTEKVIL---ELEEQRKRQSRMLISAIQEGVANKLK---------------EKDEEIHRMRKLNWVLQERVKS 154 (288)
Q Consensus 93 iD~~i~~q~Erlr~---~L~e~r~r~~r~ll~avE~~~~~rLR---------------eKe~Eie~a~r~n~eLEErlrq 154 (288)
=.++|.+++|-.+- -|+|---||... .|+..+++.|.+ .-+++|-.+++|+.++|-||+.
T Consensus 70 EErILaLEad~~kWEqkYLEEs~mrq~a~--dAaa~aa~~rdttiI~~s~~~s~~~s~r~~eel~~a~~K~qemE~RIK~ 147 (205)
T PF12240_consen 70 EERILALEADMTKWEQKYLEESAMRQFAM--DAAATAAAQRDTTIINHSPSESYNSSLREEEELHMANRKCQEMENRIKA 147 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhhHHHHHHHHHhcCCCCCCCccccchHHHHHhhhhHHHHHHHHHH
Confidence 35889999887763 377877777643 445556566666 2268999999999999999999
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHH
Q 023064 155 LFVENQIWRDLAQTNEATANTLR 177 (288)
Q Consensus 155 l~~E~qaWq~~A~~nEa~A~~Lr 177 (288)
|.+.- .+.+||...|+
T Consensus 148 LhaqI-------~EKDAmIkVLQ 163 (205)
T PF12240_consen 148 LHAQI-------AEKDAMIKVLQ 163 (205)
T ss_pred HHHHH-------HHHHHHHHHHH
Confidence 98653 45788886554
No 125
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=54.09 E-value=1.4e+02 Score=31.70 Aligned_cols=77 Identities=12% Similarity=0.227 Sum_probs=54.1
Q ss_pred HHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023064 85 RLQQQQSEIDRYIAQHTEKVILELEEQRKRQSRMLISAIQEGVANKLKEKDEEIHRMRKLNWVLQERVKSLFVENQIWR 163 (288)
Q Consensus 85 ~l~~Q~~EiD~~i~~q~Erlr~~L~e~r~r~~r~ll~avE~~~~~rLReKe~Eie~a~r~n~eLEErlrql~~E~qaWq 163 (288)
.++||..++.+=|....++.-....|.|. ..+.+...+ .....||-..|.+++........|++.+..+..--..|.
T Consensus 343 ~~~q~~~~~~~~l~~~~~~~~~~~~e~~~-~~~~~~~~~-~~~~~~l~~le~~l~~~~~~~~~L~~~~~~l~~~r~dW~ 419 (656)
T PRK06975 343 ALNRKVDRLDQELVQRQQANDAQTAELRV-KTEQAQASV-HQLDSQFAQLDGKLADAQSAQQALEQQYQDLSRNRDDWM 419 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhH
Confidence 45666667776666666666666666633 344444333 345677888888999999999999999988887777885
No 126
>smart00338 BRLZ basic region leucin zipper.
Probab=53.94 E-value=83 Score=22.84 Aligned_cols=34 Identities=18% Similarity=0.123 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 023064 144 LNWVLQERVKSLFVENQIWRDLAQTNEATANTLR 177 (288)
Q Consensus 144 ~n~eLEErlrql~~E~qaWq~~A~~nEa~A~~Lr 177 (288)
...+||.++..|..|+..++.....-+.-...|+
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk 60 (65)
T smart00338 27 EIEELERKVEQLEAENERLKKEIERLRRELEKLK 60 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678899999999999988766554444444343
No 127
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=53.87 E-value=1.1e+02 Score=24.19 Aligned_cols=30 Identities=13% Similarity=0.217 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023064 137 EIHRMRKLNWVLQERVKSLFVENQIWRDLA 166 (288)
Q Consensus 137 Eie~a~r~n~eLEErlrql~~E~qaWq~~A 166 (288)
|++.++--..+|+..-.|+..|-++||.+-
T Consensus 40 e~~~~~~~r~~L~~en~qLk~E~~~WqerL 69 (79)
T PRK15422 40 EVQNAQHQREELERENNHLKEQQNGWQERL 69 (79)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555556778888899999999998764
No 128
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=53.50 E-value=1.3e+02 Score=27.06 Aligned_cols=79 Identities=24% Similarity=0.305 Sum_probs=35.8
Q ss_pred HHHHHhHHHHHHHH-------HHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023064 95 RYIAQHTEKVILEL-------EEQRKRQSRMLISAIQEGVANKLKEKDEEIHRMRKLNWVLQERVKSLFVENQIWRDLAQ 167 (288)
Q Consensus 95 ~~i~~q~Erlr~~L-------~e~r~r~~r~ll~avE~~~~~rLReKe~Eie~a~r~n~eLEErlrql~~E~qaWq~~A~ 167 (288)
||+..=.+|||..+ ..+.+++......-+...|-.-.++.+.||.++.++...||+-. .....|+.
T Consensus 79 Qfv~hAt~KLr~iv~~tsancs~QVqqeL~~tf~rL~~~Vd~~~~eL~~eI~~L~~~i~~le~~~----~~~k~Lrn--- 151 (171)
T PF04799_consen 79 QFVDHATEKLRLIVSFTSANCSHQVQQELSSTFARLCQQVDQTKNELEDEIKQLEKEIQRLEEIQ----SKSKTLRN--- 151 (171)
T ss_dssp -------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH---
Confidence 35555555555544 23555566666666666666667888888888888887777533 33334443
Q ss_pred hhHHHHHHHHHhHHHHH
Q 023064 168 TNEATANTLRSNLEQVL 184 (288)
Q Consensus 168 ~nEa~A~~Lra~L~q~l 184 (288)
.|+-|.++|+..-
T Consensus 152 ----Ka~~L~~eL~~F~ 164 (171)
T PF04799_consen 152 ----KANWLESELERFQ 164 (171)
T ss_dssp ----HHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHH
Confidence 3455666776543
No 129
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=53.18 E-value=2.7e+02 Score=28.58 Aligned_cols=29 Identities=17% Similarity=0.050 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 023064 143 KLNWVLQERVKSLFVENQIWRDLAQTNEA 171 (288)
Q Consensus 143 r~n~eLEErlrql~~E~qaWq~~A~~nEa 171 (288)
.+..+|..+|+.|..-...|......+..
T Consensus 378 ~~l~~~~~~~~~le~~~~~~~~~~~~~~~ 406 (582)
T PF09731_consen 378 AKLAELNSRLKALEEALDARSEAEDENRR 406 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555677777766777666555543
No 130
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=53.01 E-value=5.7 Score=25.67 Aligned_cols=16 Identities=31% Similarity=0.424 Sum_probs=13.1
Q ss_pred CCCCccccccccceEE
Q 023064 269 IGSCPVCNFVVDASLH 284 (288)
Q Consensus 269 ~~~CPvCr~~i~~~v~ 284 (288)
...||+|......++.
T Consensus 17 ~~~CP~Cg~~~~~F~~ 32 (33)
T cd00350 17 PWVCPVCGAPKDKFEK 32 (33)
T ss_pred CCcCcCCCCcHHHcEE
Confidence 6799999998877664
No 131
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=52.33 E-value=27 Score=27.60 Aligned_cols=25 Identities=28% Similarity=0.264 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 023064 134 KDEEIHRMRKLNWVLQERVKSLFVE 158 (288)
Q Consensus 134 Ke~Eie~a~r~n~eLEErlrql~~E 158 (288)
-+.||++.+.+..+|++|++.|...
T Consensus 6 i~~eieK~k~Kiae~Q~rlK~Le~q 30 (83)
T PF14193_consen 6 IRAEIEKTKEKIAELQARLKELEAQ 30 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3459999999999999999988753
No 132
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=52.24 E-value=56 Score=36.97 Aligned_cols=22 Identities=9% Similarity=0.104 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 023064 140 RMRKLNWVLQERVKSLFVENQI 161 (288)
Q Consensus 140 ~a~r~n~eLEErlrql~~E~qa 161 (288)
....++.+|++.+.++.++...
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~ 209 (1123)
T PRK11448 188 ELEEKQQELEAQLEQLQEKAAE 209 (1123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5556677777777777665544
No 133
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=52.13 E-value=3.8 Score=42.67 Aligned_cols=43 Identities=26% Similarity=0.694 Sum_probs=35.7
Q ss_pred CccccccccccccceEEeCCCCcccCcchhhhc--------CCCCccccccc
Q 023064 236 GRMLCRRCGEKESSVLLLPCRHLCLCTVCGSCL--------IGSCPVCNFVV 279 (288)
Q Consensus 236 ~~~~C~iC~~~~~~vlLlPCrHlclC~~C~~~l--------~~~CPvCr~~i 279 (288)
+...|.+|.+...+.+.-.|.|. +|..|-... .-+||+|....
T Consensus 535 ~~~~C~lc~d~aed~i~s~ChH~-FCrlCi~eyv~~f~~~~nvtCP~C~i~L 585 (791)
T KOG1002|consen 535 GEVECGLCHDPAEDYIESSCHHK-FCRLCIKEYVESFMENNNVTCPVCHIGL 585 (791)
T ss_pred CceeecccCChhhhhHhhhhhHH-HHHHHHHHHHHhhhcccCCCCccccccc
Confidence 34479999999999999999998 899997543 58999997654
No 134
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=51.91 E-value=10 Score=29.48 Aligned_cols=26 Identities=31% Similarity=0.823 Sum_probs=19.1
Q ss_pred cccccccc--ccceEEeCCCCcccCcchh
Q 023064 239 LCRRCGEK--ESSVLLLPCRHLCLCTVCG 265 (288)
Q Consensus 239 ~C~iC~~~--~~~vlLlPCrHlclC~~C~ 265 (288)
.|.+|... ...+++.||+|. .-..|.
T Consensus 80 ~C~vC~k~l~~~~f~~~p~~~v-~H~~C~ 107 (109)
T PF10367_consen 80 KCSVCGKPLGNSVFVVFPCGHV-VHYSCI 107 (109)
T ss_pred CccCcCCcCCCceEEEeCCCeE-Eecccc
Confidence 68888864 467788899987 356664
No 135
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=51.55 E-value=1e+02 Score=26.75 Aligned_cols=52 Identities=13% Similarity=0.185 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHhc
Q 023064 136 EEIHRMRKLNWVLQERVKSLFVENQIWRDLAQTNEATANTLRSNLEQVLAHV 187 (288)
Q Consensus 136 ~Eie~a~r~n~eLEErlrql~~E~qaWq~~A~~nEa~A~~Lra~L~q~l~q~ 187 (288)
.-++...+-...++..+.-+..|...++.+++..+..+..|+..|...+...
T Consensus 40 ~K~~~~~~~Ik~~ea~~e~~k~E~krL~~rkk~~e~~~~~Lk~yL~~~m~~~ 91 (162)
T PF05565_consen 40 EKADNIAKVIKNLEADIEAIKAEIKRLQERKKSIENRIDRLKEYLLDAMEAA 91 (162)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3456666666677777777888888888899999999999999999988764
No 136
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=51.41 E-value=9.2 Score=37.57 Aligned_cols=52 Identities=17% Similarity=0.450 Sum_probs=32.1
Q ss_pred Cccccccccc-------------------cccceEEeCCCCcccCcchh-hh-c---------CCCCcccccccc---ce
Q 023064 236 GRMLCRRCGE-------------------KESSVLLLPCRHLCLCTVCG-SC-L---------IGSCPVCNFVVD---AS 282 (288)
Q Consensus 236 ~~~~C~iC~~-------------------~~~~vlLlPCrHlclC~~C~-~~-l---------~~~CPvCr~~i~---~~ 282 (288)
..+.|.+|+. .+.+-.|-||||+|.=+.-. +. + ...||.|-.... ++
T Consensus 340 ~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~ge~~~ 419 (429)
T KOG3842|consen 340 RERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAGEQGY 419 (429)
T ss_pred ccCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccccchhhhhHhhcCcCCCccccccccCcchhhhhccCCce
Confidence 4568999987 34455678999996422110 00 0 478999987654 45
Q ss_pred EEEee
Q 023064 283 LHVNL 287 (288)
Q Consensus 283 v~V~~ 287 (288)
|+++|
T Consensus 420 ikliF 424 (429)
T KOG3842|consen 420 IKLIF 424 (429)
T ss_pred EEEEE
Confidence 55544
No 137
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=50.79 E-value=1.1e+02 Score=23.40 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 023064 143 KLNWVLQERVKSLFVENQIWRDL 165 (288)
Q Consensus 143 r~n~eLEErlrql~~E~qaWq~~ 165 (288)
..|.+|.+...++..|-.+|+..
T Consensus 39 ~e~~~L~~en~~L~~e~~~~~~r 61 (72)
T PF06005_consen 39 EENEELKEENEQLKQERNAWQER 61 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44667777777777777777655
No 138
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=50.25 E-value=8.8 Score=38.06 Aligned_cols=49 Identities=22% Similarity=0.474 Sum_probs=39.2
Q ss_pred CccccccccccccceEE-eCCCCcccCcchhhhc---CCCCccccccccceEEE
Q 023064 236 GRMLCRRCGEKESSVLL-LPCRHLCLCTVCGSCL---IGSCPVCNFVVDASLHV 285 (288)
Q Consensus 236 ~~~~C~iC~~~~~~vlL-lPCrHlclC~~C~~~l---~~~CPvCr~~i~~~v~V 285 (288)
.+..|.+|..--.+-+. ..|+|. .|..|.... ...||.|+..++..-.+
T Consensus 20 ~~l~C~~C~~vl~~p~~~~~cgh~-fC~~C~~~~~~~~~~cp~~~~~~~~~~~~ 72 (391)
T KOG0297|consen 20 ENLLCPICMSVLRDPVQTTTCGHR-FCAGCLLESLSNHQKCPVCRQELTQAEEL 72 (391)
T ss_pred ccccCccccccccCCCCCCCCCCc-ccccccchhhccCcCCcccccccchhhcc
Confidence 44689999998888888 599999 799998775 46899998877655443
No 139
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=50.01 E-value=1.9e+02 Score=28.07 Aligned_cols=24 Identities=21% Similarity=0.389 Sum_probs=16.8
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHH
Q 023064 129 NKLKEKDEEIHRMRKLNWVLQERV 152 (288)
Q Consensus 129 ~rLReKe~Eie~a~r~n~eLEErl 152 (288)
.||.+.|.||+.++.+..-..|-|
T Consensus 82 ~~l~dRetEI~eLksQL~RMrEDW 105 (305)
T PF15290_consen 82 NRLHDRETEIDELKSQLARMREDW 105 (305)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHH
Confidence 567777777777777666666655
No 140
>COG2959 HemX Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=49.73 E-value=2.2e+02 Score=28.61 Aligned_cols=82 Identities=22% Similarity=0.209 Sum_probs=55.9
Q ss_pred chHHHHHHHHhhhHHH---HHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 023064 78 LDQDIIFRLQQQQSEI---DRYIAQHTEKVILELEEQR-KRQSRMLISAIQEGVANKLKEKDEEIHRMRKLNWVLQERVK 153 (288)
Q Consensus 78 ~~~~l~~~l~~Q~~Ei---D~~i~~q~Erlr~~L~e~r-~r~~r~ll~avE~~~~~rLReKe~Eie~a~r~n~eLEErlr 153 (288)
+|-+..++.++|...+ +++++.|...+..+.+.++ -++...++.+.+. .|+..+-+++.-.+...|+..+++
T Consensus 46 LGagg~~f~QqQ~~~~~~~l~a~~~q~~~~~~aqe~q~l~~ql~~~~~~~q~----el~~l~~~~~~~~~ql~e~Q~~v~ 121 (391)
T COG2959 46 LGAGGYYFGQQQNVLQTQELQALQQQLKALQLAQENQKLLAQLESLIAQQQA----ELDRLERQLETLQKQLSELQKKVA 121 (391)
T ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhHHHHHHHHHH
Confidence 4666677778887655 4566667665555555444 2555555555554 456678889999999999999999
Q ss_pred HHHHH-HHHHH
Q 023064 154 SLFVE-NQIWR 163 (288)
Q Consensus 154 ql~~E-~qaWq 163 (288)
.++.- ...|.
T Consensus 122 ~is~~~~~dWl 132 (391)
T COG2959 122 TISGSDRKDWL 132 (391)
T ss_pred HhccCChhhHH
Confidence 88844 55664
No 141
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=49.35 E-value=96 Score=32.52 Aligned_cols=62 Identities=26% Similarity=0.326 Sum_probs=41.5
Q ss_pred hHHHHHHHHHHHHHHHHHH--HHHHHHHhH---HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023064 100 HTEKVILELEEQRKRQSRM--LISAIQEGV---ANKLKEKDEEIHRMRKLNWVLQERVKSLFVENQI 161 (288)
Q Consensus 100 q~Erlr~~L~e~r~r~~r~--ll~avE~~~---~~rLReKe~Eie~a~r~n~eLEErlrql~~E~qa 161 (288)
...+|+-.+.+.|++.-.+ .+..++..+ ..+|=++++|+.-+++++..||+.++.|..|+.-
T Consensus 114 ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~r 180 (546)
T KOG0977|consen 114 EITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSR 180 (546)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3455566666665554433 333333222 4677788899999999999999999999988753
No 142
>PRK10884 SH3 domain-containing protein; Provisional
Probab=48.43 E-value=2.2e+02 Score=26.02 Aligned_cols=40 Identities=10% Similarity=0.062 Sum_probs=21.2
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023064 129 NKLKEKDEEIHRMRKLNWVLQERVKSLFVENQIWRDLAQT 168 (288)
Q Consensus 129 ~rLReKe~Eie~a~r~n~eLEErlrql~~E~qaWq~~A~~ 168 (288)
.+..+...+++.......+|++.-++|..|.+.=+.....
T Consensus 118 ~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~ 157 (206)
T PRK10884 118 QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDA 157 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555666666665555554444333
No 143
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=48.21 E-value=64 Score=33.23 Aligned_cols=31 Identities=19% Similarity=0.150 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023064 135 DEEIHRMRKLNWVLQERVKSLFVENQIWRDL 165 (288)
Q Consensus 135 e~Eie~a~r~n~eLEErlrql~~E~qaWq~~ 165 (288)
..|++.+.+++.++|++|+.+..|++.-+..
T Consensus 89 rqElq~~saq~~dle~KIkeLEaE~~~Lk~Q 119 (475)
T PRK13729 89 RRELDVLNKQRGDDQRRIEKLGQDNAALAEQ 119 (475)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 3466666677778888888777766665444
No 144
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=48.16 E-value=2.2e+02 Score=25.94 Aligned_cols=12 Identities=8% Similarity=0.354 Sum_probs=5.9
Q ss_pred HhhhHHHHHHHH
Q 023064 87 QQQQSEIDRYIA 98 (288)
Q Consensus 87 ~~Q~~EiD~~i~ 98 (288)
+.-+.+|+.+|.
T Consensus 37 ~~l~~~i~~~l~ 48 (302)
T PF10186_consen 37 EELRRRIEEILE 48 (302)
T ss_pred HHHHHHHHHHHH
Confidence 344445555554
No 145
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=48.07 E-value=69 Score=29.48 Aligned_cols=23 Identities=26% Similarity=0.320 Sum_probs=11.6
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHH
Q 023064 130 KLKEKDEEIHRMRKLNWVLQERV 152 (288)
Q Consensus 130 rLReKe~Eie~a~r~n~eLEErl 152 (288)
+|.+-+.|||.+..+.+.|++++
T Consensus 170 ~L~~v~~eIe~~~~~~~~l~~~v 192 (262)
T PF14257_consen 170 ELSRVRSEIEQLEGQLKYLDDRV 192 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444445555555555555544
No 146
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=47.99 E-value=39 Score=30.87 Aligned_cols=49 Identities=16% Similarity=0.214 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHH
Q 023064 134 KDEEIHRMRKLNWVLQERVKSLFVENQIWRDLAQTNEATANTLRSNLEQVLA 185 (288)
Q Consensus 134 Ke~Eie~a~r~n~eLEErlrql~~E~qaWq~~A~~nEa~A~~Lra~L~q~l~ 185 (288)
-|=|+.+++|..++||+++..+..+...- ........+-++.+++|+|.
T Consensus 94 ~dwEevrLkrELa~Le~~l~~~~~~~~~~---~~~~~~~~~lvk~e~EqLL~ 142 (195)
T PF12761_consen 94 TDWEEVRLKRELAELEEKLSKVEQAAESR---RSDTDSKPALVKREFEQLLD 142 (195)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhc---ccCCcchHHHHHHHHHHHHH
Confidence 34577888888999999988877666543 11222333456788888887
No 147
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=47.74 E-value=2.5e+02 Score=30.54 Aligned_cols=12 Identities=25% Similarity=0.324 Sum_probs=6.5
Q ss_pred HhhhHHHHHHHH
Q 023064 87 QQQQSEIDRYIA 98 (288)
Q Consensus 87 ~~Q~~EiD~~i~ 98 (288)
.....+++.+|.
T Consensus 507 ~~~~~~~~~li~ 518 (771)
T TIGR01069 507 GEFKEEINVLIE 518 (771)
T ss_pred HhhHHHHHHHHH
Confidence 444456666653
No 148
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=47.45 E-value=14 Score=41.97 Aligned_cols=48 Identities=25% Similarity=0.623 Sum_probs=35.8
Q ss_pred ccccccccccccceEEeC-CCCcc----cCcchhhhc-CC-----CCccccccccceEEE
Q 023064 237 RMLCRRCGEKESSVLLLP-CRHLC----LCTVCGSCL-IG-----SCPVCNFVVDASLHV 285 (288)
Q Consensus 237 ~~~C~iC~~~~~~vlLlP-CrHlc----lC~~C~~~l-~~-----~CPvCr~~i~~~v~V 285 (288)
.+.|.-|+..-.. .+.| ||+.. .|..|...+ .. .||-|..+......+
T Consensus 667 ~rkCPkCG~~t~~-~fCP~CGs~te~vy~CPsCGaev~~des~a~~CP~CGtplv~~~~~ 725 (1337)
T PRK14714 667 RRRCPSCGTETYE-NRCPDCGTHTEPVYVCPDCGAEVPPDESGRVECPRCDVELTPYQRR 725 (1337)
T ss_pred EEECCCCCCcccc-ccCcccCCcCCCceeCccCCCccCCCccccccCCCCCCcccccceE
Confidence 4689999986544 3778 98663 599998875 33 899999888776554
No 149
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=47.09 E-value=1.5e+02 Score=26.36 Aligned_cols=34 Identities=24% Similarity=0.277 Sum_probs=19.9
Q ss_pred HHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 023064 122 AIQEGVANKLKEKDEEIHRMRKLNWVLQERVKSL 155 (288)
Q Consensus 122 avE~~~~~rLReKe~Eie~a~r~n~eLEErlrql 155 (288)
..+..|.=+|=+--.|||.+..+...||+++.++
T Consensus 111 kad~vvsYqll~hr~e~ee~~~~l~~le~~~~~~ 144 (175)
T PRK13182 111 KADDVVSYQLLQHRREMEEMLERLQKLEARLKKL 144 (175)
T ss_pred HHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444557777777777777776653
No 150
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=47.09 E-value=1.1e+02 Score=22.19 Aligned_cols=33 Identities=21% Similarity=0.197 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 023064 145 NWVLQERVKSLFVENQIWRDLAQTNEATANTLR 177 (288)
Q Consensus 145 n~eLEErlrql~~E~qaWq~~A~~nEa~A~~Lr 177 (288)
..+||+++..|..|+..++.....-+.....|.
T Consensus 28 ~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~ 60 (64)
T PF00170_consen 28 IEELEEKVEELESENEELKKELEQLKKEIQSLK 60 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666655544333333333333
No 151
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=46.53 E-value=8.3 Score=33.32 Aligned_cols=45 Identities=31% Similarity=0.721 Sum_probs=32.2
Q ss_pred cccccccccccceEEe-C--CCCcccCcchhhhc------CCCCccccccccce
Q 023064 238 MLCRRCGEKESSVLLL-P--CRHLCLCTVCGSCL------IGSCPVCNFVVDAS 282 (288)
Q Consensus 238 ~~C~iC~~~~~~vlLl-P--CrHlclC~~C~~~l------~~~CPvCr~~i~~~ 282 (288)
..|-||.+...+--|| | |--+.+|..|-..+ ...||+|+..+.++
T Consensus 81 YeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 81 YECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSS 134 (140)
T ss_pred eeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCccccccccc
Confidence 3677777765555443 2 33377899998876 68999999887765
No 152
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=46.37 E-value=2.3e+02 Score=25.86 Aligned_cols=79 Identities=25% Similarity=0.343 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhH
Q 023064 101 TEKVILELEEQRKRQSRMLISAIQEGVANKLKEKDEEIHRMRKLNWVLQERVKSLFVENQIWRDLAQTNEATANTLRSNL 180 (288)
Q Consensus 101 ~Erlr~~L~e~r~r~~r~ll~avE~~~~~rLReKe~Eie~a~r~n~eLEErlrql~~E~qaWq~~A~~nEa~A~~Lra~L 180 (288)
+-+|-..+.+.| .+++++-.+++.+ +.-++|++.++--...|||.-++|.+.+.---+..+.=.+-...|+...
T Consensus 38 na~L~~e~~~L~-~q~~s~Qqal~~a-----K~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen 111 (193)
T PF14662_consen 38 NAQLAEEITDLR-KQLKSLQQALQKA-----KALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEEN 111 (193)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555544 3445554444433 6667788888888888888877777766655555555555555555555
Q ss_pred HHHHH
Q 023064 181 EQVLA 185 (288)
Q Consensus 181 ~q~l~ 185 (288)
..++.
T Consensus 112 ~kl~~ 116 (193)
T PF14662_consen 112 GKLLA 116 (193)
T ss_pred hHHHH
Confidence 44443
No 153
>PLN02189 cellulose synthase
Probab=45.93 E-value=14 Score=41.17 Aligned_cols=44 Identities=23% Similarity=0.643 Sum_probs=33.7
Q ss_pred cccccccccc----ccceEEeCCC--CcccCcchhhhc----CCCCcccccccc
Q 023064 237 RMLCRRCGEK----ESSVLLLPCR--HLCLCTVCGSCL----IGSCPVCNFVVD 280 (288)
Q Consensus 237 ~~~C~iC~~~----~~~vlLlPCr--HlclC~~C~~~l----~~~CPvCr~~i~ 280 (288)
...|.||++. ...=+|+.|+ .+.+|..|..-- ...||.|+....
T Consensus 34 ~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 34 GQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 3489999997 6666888895 345899997432 789999998765
No 154
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=45.91 E-value=3.3e+02 Score=29.67 Aligned_cols=31 Identities=26% Similarity=0.390 Sum_probs=15.0
Q ss_pred HHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHH
Q 023064 81 DIIFRLQQQQSEIDRYIAQHTEKVILELEEQR 112 (288)
Q Consensus 81 ~l~~~l~~Q~~EiD~~i~~q~Erlr~~L~e~r 112 (288)
++...|++++.+++... .+.++++..+++.+
T Consensus 515 ~li~~L~~~~~~~e~~~-~~~~~~~~e~~~~~ 545 (771)
T TIGR01069 515 VLIEKLSALEKELEQKN-EHLEKLLKEQEKLK 545 (771)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 34556666666655532 33344444444433
No 155
>PRK14140 heat shock protein GrpE; Provisional
Probab=45.62 E-value=77 Score=28.70 Aligned_cols=31 Identities=16% Similarity=0.123 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023064 135 DEEIHRMRKLNWVLQERVKSLFVENQIWRDL 165 (288)
Q Consensus 135 e~Eie~a~r~n~eLEErlrql~~E~qaWq~~ 165 (288)
+.+|+.+..++.+|.+++.++.+|.+..+++
T Consensus 43 ~~~i~~l~~ei~elkd~~lR~~Ae~eN~rkR 73 (191)
T PRK14140 43 QAKIAELEAKLDELEERYLRLQADFENYKRR 73 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444
No 156
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=45.43 E-value=1.6e+02 Score=32.67 Aligned_cols=48 Identities=27% Similarity=0.195 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHH
Q 023064 138 IHRMRKLNWVLQERVKSLFVENQIWRDLAQTNEATANTLRSNLEQVLA 185 (288)
Q Consensus 138 ie~a~r~n~eLEErlrql~~E~qaWq~~A~~nEa~A~~Lra~L~q~l~ 185 (288)
++.+++....++-++..+.+|.+.-|..|++|-.-.--||.+|.|.++
T Consensus 353 ~~ear~~~~q~~~ql~~le~~~~e~q~~~qe~~~e~eqLr~elaql~a 400 (980)
T KOG0980|consen 353 KEEARRRIEQYENQLLALEGELQEQQREAQENREEQEQLRNELAQLLA 400 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444444444
No 157
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=45.08 E-value=1.1e+02 Score=27.39 Aligned_cols=30 Identities=27% Similarity=0.233 Sum_probs=17.7
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023064 132 KEKDEEIHRMRKLNWVLQERVKSLFVENQI 161 (288)
Q Consensus 132 ReKe~Eie~a~r~n~eLEErlrql~~E~qa 161 (288)
+.|++-|+.+.++..+|++++.++..|-+.
T Consensus 142 ~~r~~~i~~a~~~~~e~~~~l~~l~~ei~~ 171 (176)
T PF12999_consen 142 KIRQELIEEAKKKREELEKKLEELEKEIQA 171 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555666666677777666665543
No 158
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=44.84 E-value=1.5e+02 Score=23.17 Aligned_cols=84 Identities=21% Similarity=0.323 Sum_probs=45.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHH--HhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhHH
Q 023064 98 AQHTEKVILELEEQRKRQSRMLISAIQ--EGVANKLKEKDEEIHRMRKLNWVLQERVKSLFVENQIWR----DLAQTNEA 171 (288)
Q Consensus 98 ~~q~Erlr~~L~e~r~r~~r~ll~avE--~~~~~rLReKe~Eie~a~r~n~eLEErlrql~~E~qaWq----~~A~~nEa 171 (288)
+....+++..+.+-++-|...+ .+.. ..+..+|.. .++.++....++-.+|+.|..++..-. ...+....
T Consensus 14 ~~~I~~i~~~v~~l~~l~~~~l-~~~~~~~~~~~~l~~---~~~~~~~~~~~i~~~lk~l~~~~~~~~~~~~~~~r~~~~ 89 (117)
T smart00503 14 RANIQKISQNVAELQKLHEELL-TPPDADKELREKLER---LIDDIKRLAKEIRAKLKELEKENLENRASGSASDRTRKA 89 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-ccCchhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhHHhhcccCCHhhhHHHH
Confidence 3344455555555555555443 3332 223333433 566667777777788888776654211 12344455
Q ss_pred HHHHHHHhHHHHHH
Q 023064 172 TANTLRSNLEQVLA 185 (288)
Q Consensus 172 ~A~~Lra~L~q~l~ 185 (288)
....|...+..++.
T Consensus 90 q~~~L~~~f~~~m~ 103 (117)
T smart00503 90 QTEKLRKKFKEVMN 103 (117)
T ss_pred HHHHHHHHHHHHHH
Confidence 66667777766654
No 159
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=44.70 E-value=1.4e+02 Score=22.83 Aligned_cols=35 Identities=20% Similarity=0.119 Sum_probs=27.4
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023064 132 KEKDEEIHRMRKLNWVLQERVKSLFVENQIWRDLA 166 (288)
Q Consensus 132 ReKe~Eie~a~r~n~eLEErlrql~~E~qaWq~~A 166 (288)
.....|++....+|.+|.+.-..|..|++--+..-
T Consensus 21 ~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~ 55 (72)
T PF06005_consen 21 ALLQMENEELKEKNNELKEENEELKEENEQLKQER 55 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 33445888888999999998999999988877443
No 160
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=44.52 E-value=4.3e+02 Score=28.76 Aligned_cols=21 Identities=14% Similarity=0.369 Sum_probs=13.4
Q ss_pred CCccCCCCcccccccccccCC
Q 023064 6 PFAEPMPEQTMLPFYQAFDCN 26 (288)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~ 26 (288)
++|.|..+..-+|+|..+|++
T Consensus 357 G~~vpa~~~~~i~~~~~i~~~ 377 (782)
T PRK00409 357 GLPIPANEPSEIPVFKEIFAD 377 (782)
T ss_pred CCCcccCCCccccccceEEEe
Confidence 455665554567888777755
No 161
>PRK11637 AmiB activator; Provisional
Probab=44.48 E-value=3.3e+02 Score=26.98 Aligned_cols=13 Identities=23% Similarity=0.210 Sum_probs=5.3
Q ss_pred HHHhhhHHHHHHH
Q 023064 85 RLQQQQSEIDRYI 97 (288)
Q Consensus 85 ~l~~Q~~EiD~~i 97 (288)
.++++..++.+=|
T Consensus 44 ~~~~~l~~l~~qi 56 (428)
T PRK11637 44 DNRDQLKSIQQDI 56 (428)
T ss_pred hhHHHHHHHHHHH
Confidence 3444444444433
No 162
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=44.40 E-value=3.8e+02 Score=27.72 Aligned_cols=6 Identities=17% Similarity=0.396 Sum_probs=2.4
Q ss_pred eEEeCC
Q 023064 250 VLLLPC 255 (288)
Q Consensus 250 vlLlPC 255 (288)
++++.|
T Consensus 246 ~v~ls~ 251 (514)
T TIGR03319 246 AVILSG 251 (514)
T ss_pred eEEecC
Confidence 333433
No 163
>PF06364 DUF1068: Protein of unknown function (DUF1068); InterPro: IPR010471 This family consists of several hypothetical plant proteins from Arabidopsis thaliana and Oryza sativa. The function of this family is unknown.
Probab=44.08 E-value=1.5e+02 Score=26.62 Aligned_cols=72 Identities=14% Similarity=0.245 Sum_probs=38.8
Q ss_pred HHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhh-----------------HHHHHHHHH
Q 023064 81 DIIFRLQQQQSEIDRYIAQHTEKVILELEEQRKRQSRMLISAIQEGVANKLKEK-----------------DEEIHRMRK 143 (288)
Q Consensus 81 ~l~~~l~~Q~~EiD~~i~~q~Erlr~~L~e~r~r~~r~ll~avE~~~~~rLReK-----------------e~Eie~a~r 143 (288)
++.-+++++-.|+ |. +.=+|+....+..++|+..+|--+-+.+.+=-||. |+.|..-+|
T Consensus 77 e~~eEmeK~~~~L---L~-EELkLqe~~A~e~~~~~~~~lleAkk~asqYQkEAeKCnsgmeTCEeAREkaEa~L~~e~K 152 (176)
T PF06364_consen 77 EVSEEMEKNFVDL---LS-EELKLQEAVANENQRRADMALLEAKKMASQYQKEAEKCNSGMETCEEAREKAEAALVEERK 152 (176)
T ss_pred hhhHHHHhhHHHH---HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Confidence 4555555543331 21 22245556666666666666655555544433332 234555566
Q ss_pred HHHHHHHHHHHHH
Q 023064 144 LNWVLQERVKSLF 156 (288)
Q Consensus 144 ~n~eLEErlrql~ 156 (288)
..+-||.|.||+.
T Consensus 153 ltalWE~RARq~G 165 (176)
T PF06364_consen 153 LTALWEQRARQLG 165 (176)
T ss_pred HHHHHHHHHHHcC
Confidence 7777777777764
No 164
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=43.56 E-value=7.1 Score=34.46 Aligned_cols=26 Identities=38% Similarity=0.922 Sum_probs=22.1
Q ss_pred cCcchhhhcCCCCccccccccceEEE
Q 023064 260 LCTVCGSCLIGSCPVCNFVVDASLHV 285 (288)
Q Consensus 260 lC~~C~~~l~~~CPvCr~~i~~~v~V 285 (288)
+|..|.......||-|..+|.+..+|
T Consensus 30 fC~kCG~~tI~~Cp~C~~~IrG~y~v 55 (158)
T PF10083_consen 30 FCSKCGAKTITSCPNCSTPIRGDYHV 55 (158)
T ss_pred HHHHhhHHHHHHCcCCCCCCCCceec
Confidence 57888777689999999999998765
No 165
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=43.46 E-value=2.2e+02 Score=24.65 Aligned_cols=52 Identities=23% Similarity=0.252 Sum_probs=21.3
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHH
Q 023064 132 KEKDEEIHRMRKLNWVLQERVKSLFVENQIWRDLAQTNEATANTLRSNLEQV 183 (288)
Q Consensus 132 ReKe~Eie~a~r~n~eLEErlrql~~E~qaWq~~A~~nEa~A~~Lra~L~q~ 183 (288)
+.+.+++.......+++.+.++.+..+.+.=+..++..+.....++.+++++
T Consensus 126 ~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 177 (191)
T PF04156_consen 126 KSVEERLDSLDESIKELEKEIRELQKELQDSREEVQELRSQLERLQENLQQL 177 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444333333333333333333344444433
No 166
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=43.18 E-value=1.2e+02 Score=21.43 Aligned_cols=24 Identities=21% Similarity=0.342 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 023064 135 DEEIHRMRKLNWVLQERVKSLFVE 158 (288)
Q Consensus 135 e~Eie~a~r~n~eLEErlrql~~E 158 (288)
+.++..+...|..|...+..|..|
T Consensus 31 e~~~~~L~~en~~L~~~i~~L~~E 54 (54)
T PF07716_consen 31 EQEVQELEEENEQLRQEIAQLERE 54 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 345555555566665555555443
No 167
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=43.15 E-value=8.4 Score=38.17 Aligned_cols=42 Identities=29% Similarity=0.726 Sum_probs=30.3
Q ss_pred cccccccc----ccceEEeCCCCcccCcchhhhc----CCCCccccccccc
Q 023064 239 LCRRCGEK----ESSVLLLPCRHLCLCTVCGSCL----IGSCPVCNFVVDA 281 (288)
Q Consensus 239 ~C~iC~~~----~~~vlLlPCrHlclC~~C~~~l----~~~CPvCr~~i~~ 281 (288)
.|..|++. ..+..=.|||-. +|..|...+ ...||.||...+.
T Consensus 16 ~cplcie~mditdknf~pc~cgy~-ic~fc~~~irq~lngrcpacrr~y~d 65 (480)
T COG5175 16 YCPLCIEPMDITDKNFFPCPCGYQ-ICQFCYNNIRQNLNGRCPACRRKYDD 65 (480)
T ss_pred cCcccccccccccCCcccCCcccH-HHHHHHHHHHhhccCCChHhhhhccc
Confidence 48888873 334444566655 799998876 7999999987654
No 168
>PF14916 CCDC92: Coiled-coil domain of unknown function
Probab=43.10 E-value=67 Score=24.04 Aligned_cols=22 Identities=41% Similarity=0.415 Sum_probs=16.9
Q ss_pred HHHHHhhHHHHHHHHHHHHHHH
Q 023064 128 ANKLKEKDEEIHRMRKLNWVLQ 149 (288)
Q Consensus 128 ~~rLReKe~Eie~a~r~n~eLE 149 (288)
+.-|+..-+||++.+++|.+|.
T Consensus 20 ~~tL~~LH~EIe~Lq~~~~dL~ 41 (60)
T PF14916_consen 20 AQTLKGLHAEIERLQKRNKDLT 41 (60)
T ss_pred HHHHHHHHHHHHHHHHhccccc
Confidence 3445666669999999999885
No 169
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=42.77 E-value=2.5e+02 Score=25.23 Aligned_cols=31 Identities=26% Similarity=0.266 Sum_probs=17.2
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023064 131 LKEKDEEIHRMRKLNWVLQERVKSLFVENQI 161 (288)
Q Consensus 131 LReKe~Eie~a~r~n~eLEErlrql~~E~qa 161 (288)
++++|.+|..+.++..+|++....+..+.++
T Consensus 126 ~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~ 156 (190)
T PF05266_consen 126 LKELESEIKELEMKILELQRQAAKLKEKKEA 156 (190)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666655555444433
No 170
>PHA03415 putative internal virion protein; Provisional
Probab=42.71 E-value=85 Score=34.62 Aligned_cols=87 Identities=16% Similarity=0.189 Sum_probs=64.1
Q ss_pred hHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHH-----------HHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHH--
Q 023064 79 DQDIIFRLQQQQSEIDRYIAQHTEKVILELEEQ-----------RKRQSRMLISAIQEGVANKLKEKDEEIHRMRKLN-- 145 (288)
Q Consensus 79 ~~~l~~~l~~Q~~EiD~~i~~q~Erlr~~L~e~-----------r~r~~r~ll~avE~~~~~rLReKe~Eie~a~r~n-- 145 (288)
.+.-++.+..-+.|.|-+++.-.|-|-++|.++ |.+.++.--.++|+.+.+-|-..|+|--+..+-.
T Consensus 298 n~naas~~r~~~n~~~g~~~~~~~~~~~~~~~~~g~g~~~~~~~~s~r~~~ardale~kvt~eL~rrd~~ws~~G~v~~d 377 (1019)
T PHA03415 298 NDNAASFFRMNSNEADGLFAAWDDGLEKEIAKREGFGTAQIKLDASGRYADAKDALERKVADELARRDAEWSRFGAVMAD 377 (1019)
T ss_pred CccHHHHHHHhhhhhhhHHHHHHhHHHHHHHHhcCccHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhhHHHHhcCCccCC
Confidence 455677888889999999999999999999995 4555667778888888887755566665544433
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 023064 146 WVLQERVKSLFVENQIWRDL 165 (288)
Q Consensus 146 ~eLEErlrql~~E~qaWq~~ 165 (288)
-.+.-.+++|..|.+.|+..
T Consensus 378 p~~dp~IarLAd~~~~~he~ 397 (1019)
T PHA03415 378 PNLDPDIARLADESDAFHGQ 397 (1019)
T ss_pred CCCChHHHHHHHHHHHHHHH
Confidence 23455667777777777655
No 171
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=42.35 E-value=3.3e+02 Score=29.61 Aligned_cols=13 Identities=15% Similarity=0.491 Sum_probs=7.8
Q ss_pred HHhhhHHHHHHHH
Q 023064 86 LQQQQSEIDRYIA 98 (288)
Q Consensus 86 l~~Q~~EiD~~i~ 98 (288)
+..+..+++.+|.
T Consensus 511 ~~~~~~~~~~li~ 523 (782)
T PRK00409 511 IGEDKEKLNELIA 523 (782)
T ss_pred HhhhhhHHHHHHH
Confidence 4455567777664
No 172
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=42.23 E-value=67 Score=23.55 Aligned_cols=33 Identities=18% Similarity=0.118 Sum_probs=20.2
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023064 130 KLKEKDEEIHRMRKLNWVLQERVKSLFVENQIW 162 (288)
Q Consensus 130 rLReKe~Eie~a~r~n~eLEErlrql~~E~qaW 162 (288)
++.++..|++...+++.+|.+...++..|-+.+
T Consensus 18 ~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 18 RYYQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555566666666666666666666666655
No 173
>PF14738 PaaSYMP: Solute carrier (proton/amino acid symporter), TRAMD3 or PAT1
Probab=41.54 E-value=2.1e+02 Score=25.06 Aligned_cols=56 Identities=23% Similarity=0.266 Sum_probs=47.2
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHH
Q 023064 89 QQSEIDRYIAQHTEKVILELEEQRKRQSRMLISAIQEGVANKLKEKDEEIHRMRKL 144 (288)
Q Consensus 89 Q~~EiD~~i~~q~Erlr~~L~e~r~r~~r~ll~avE~~~~~rLReKe~Eie~a~r~ 144 (288)
--.||+.+=....+-|+..|.+.-+.+-.....-+|....++..+|+.-|+++.+.
T Consensus 92 RE~eI~~lQe~RLell~~~l~~RE~~~~~~~~~Rle~~~~~~~~~k~~~i~ki~~~ 147 (154)
T PF14738_consen 92 REEEIQELQERRLELLKKMLQEREKEQEEANEQRLERLWQKKQKEKERKIEKIEKE 147 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34688888888888889999998888888888999999999999999888888653
No 174
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=41.15 E-value=3.8e+02 Score=31.27 Aligned_cols=35 Identities=17% Similarity=0.022 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 023064 138 IHRMRKLNWVLQERVKSLFVENQIWRDLAQTNEAT 172 (288)
Q Consensus 138 ie~a~r~n~eLEErlrql~~E~qaWq~~A~~nEa~ 172 (288)
+..+..+..+|+-++..|..+..---..|++.|.+
T Consensus 1614 ~~~a~q~~~eL~~~~e~lk~~~~qns~~A~~a~~~ 1648 (1758)
T KOG0994|consen 1614 ATSATQQLGELETRMEELKHKAAQNSAEAKQAEKT 1648 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 33445555555555555544443333334333333
No 175
>PRK10963 hypothetical protein; Provisional
Probab=40.68 E-value=96 Score=28.21 Aligned_cols=11 Identities=36% Similarity=0.398 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 023064 145 NWVLQERVKSL 155 (288)
Q Consensus 145 n~eLEErlrql 155 (288)
|.+||+++.++
T Consensus 53 ~~~Le~~l~~L 63 (223)
T PRK10963 53 IHVLEEEMTLL 63 (223)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 176
>COG4306 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.63 E-value=9.8 Score=32.78 Aligned_cols=26 Identities=31% Similarity=0.899 Sum_probs=19.0
Q ss_pred cCcchhhhcCCCCccccccccceEEE
Q 023064 260 LCTVCGSCLIGSCPVCNFVVDASLHV 285 (288)
Q Consensus 260 lC~~C~~~l~~~CPvCr~~i~~~v~V 285 (288)
+|..|.......||+|..+|.+...|
T Consensus 30 fcskcgeati~qcp~csasirgd~~v 55 (160)
T COG4306 30 FCSKCGEATITQCPICSASIRGDYYV 55 (160)
T ss_pred HHhhhchHHHhcCCccCCccccccee
Confidence 35555544378999999999987665
No 177
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=40.40 E-value=3.1e+02 Score=25.53 Aligned_cols=88 Identities=16% Similarity=0.268 Sum_probs=57.7
Q ss_pred HHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH------hhHHHHHHHHHHHHHH-----HH
Q 023064 82 IIFRLQQQQSEIDRYIAQHTEKVILELEEQRKRQSRMLISAIQEGVANKLK------EKDEEIHRMRKLNWVL-----QE 150 (288)
Q Consensus 82 l~~~l~~Q~~EiD~~i~~q~Erlr~~L~e~r~r~~r~ll~avE~~~~~rLR------eKe~Eie~a~r~n~eL-----EE 150 (288)
..++|-.-...|..+..-|+++.-..+.+--+-..| ++.+|-.....|.+ ..+.+|.+-+-....| .+
T Consensus 81 als~laev~~~i~~~~~~qa~qd~~~f~e~l~eYiR-li~SVK~~f~~R~k~~~~~~~~~~~l~kKr~~~~Kl~~~~~~d 159 (234)
T cd07665 81 ALSQLAEVEEKIEQLHQEQANNDFFLLAELLADYIR-LLSAVRGAFDQRMKTWQRWQDAQAMLQKKREAEARLLWANKPD 159 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch
Confidence 345666667788888888999888888888766664 44666655555532 3334444332222222 47
Q ss_pred HHHHHHHHHHHHHHHHHhhH
Q 023064 151 RVKSLFVENQIWRDLAQTNE 170 (288)
Q Consensus 151 rlrql~~E~qaWq~~A~~nE 170 (288)
++.++..|-+.|+..+...+
T Consensus 160 K~~~a~~Ev~e~e~k~~~a~ 179 (234)
T cd07665 160 KLQQAKDEIAEWESRVTQYE 179 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 88899999999988875543
No 178
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=40.04 E-value=3.6e+02 Score=27.47 Aligned_cols=72 Identities=17% Similarity=0.184 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHh
Q 023064 111 QRKRQSRMLISAIQEGVANKLKEKDEEIHRMRKLNWVLQERVKSLFVENQIWRDLAQTNEATANTLRSNLEQVLAH 186 (288)
Q Consensus 111 ~r~r~~r~ll~avE~~~~~rLReKe~Eie~a~r~n~eLEErlrql~~E~qaWq~~A~~nEa~A~~Lra~L~q~l~q 186 (288)
+|..+++.=+...+ +++++...+..+..+..+++|..+.++..+--.-...-...+.....+..+|+.+..+
T Consensus 38 ~~l~q~q~ei~~~~----~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q 109 (420)
T COG4942 38 KQLKQIQKEIAALE----KKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQ 109 (420)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHH
No 179
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=39.83 E-value=1.4e+02 Score=26.39 Aligned_cols=31 Identities=26% Similarity=0.272 Sum_probs=12.2
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023064 131 LKEKDEEIHRMRKLNWVLQERVKSLFVENQI 161 (288)
Q Consensus 131 LReKe~Eie~a~r~n~eLEErlrql~~E~qa 161 (288)
+++++..|..+...+..|+++++++..+-..
T Consensus 111 ~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~e 141 (194)
T PF08614_consen 111 LSEKERRLAELEAELAQLEEKIKDLEEELKE 141 (194)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444333
No 180
>KOG4398 consensus Predicted coiled-coil protein [General function prediction only]
Probab=39.61 E-value=1.4e+02 Score=29.08 Aligned_cols=56 Identities=25% Similarity=0.253 Sum_probs=37.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHH--HHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 023064 92 EIDRYIAQHTEKVILELEEQRKRQ--SRMLISAIQEGVANKLKEKDEEIHRMRKLNWVLQERV 152 (288)
Q Consensus 92 EiD~~i~~q~Erlr~~L~e~r~r~--~r~ll~avE~~~~~rLReKe~Eie~a~r~n~eLEErl 152 (288)
.+.+.|-.++|.|-+..+-.++.- ...|.+ -++|+.||.++|.|.++|.-.|.|..
T Consensus 9 ~~~~~i~k~nee~~~~~~~~~k~~e~~qkl~s-----r~~~~~ekke~i~r~n~k~~d~v~~~ 66 (359)
T KOG4398|consen 9 QLKQTICKGNEEMEKNSEGLLKTKEKNQKLYS-----RAQRHQEKKEKIQRHNRKLGDLVEKK 66 (359)
T ss_pred HHHHHHhcCcHHHHHhHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhhhhcchHHHHH
Confidence 345677777888777776665432 233333 35788999999998888777666654
No 181
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=39.03 E-value=1.4e+02 Score=26.00 Aligned_cols=16 Identities=19% Similarity=0.287 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 023064 138 IHRMRKLNWVLQERVK 153 (288)
Q Consensus 138 ie~a~r~n~eLEErlr 153 (288)
...+.++..+|+.+|+
T Consensus 56 q~~~e~RI~~L~~~L~ 71 (158)
T PRK05892 56 LARLDDRINELDRRLR 71 (158)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444443
No 182
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=38.78 E-value=85 Score=23.62 Aligned_cols=36 Identities=14% Similarity=0.124 Sum_probs=30.6
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023064 130 KLKEKDEEIHRMRKLNWVLQERVKSLFVENQIWRDL 165 (288)
Q Consensus 130 rLReKe~Eie~a~r~n~eLEErlrql~~E~qaWq~~ 165 (288)
..|....+++++.++..++++.+.+|..|-..|.+.
T Consensus 25 ~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~~ 60 (85)
T TIGR02209 25 QTRQLNNELQKLQLEIDKLQKEWRDLQLEVAELSRH 60 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCH
Confidence 467788899999999999999999999998888653
No 183
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=38.53 E-value=64 Score=30.28 Aligned_cols=41 Identities=20% Similarity=0.225 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHh
Q 023064 139 HRMRKLNWVLQERVKSLFVENQIWRDLAQTNEATANTLRSNLEQVLAH 186 (288)
Q Consensus 139 e~a~r~n~eLEErlrql~~E~qaWq~~A~~nEa~A~~Lra~L~q~l~q 186 (288)
+|.+.||.|||+.+++...+.+.-+.. +..|+++--++..+
T Consensus 89 DRFR~Rn~ELE~elr~~~~~~~~L~~E-------v~~L~~DN~kLYEK 129 (248)
T PF08172_consen 89 DRFRQRNAELEEELRKQQQTISSLRRE-------VESLRADNVKLYEK 129 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 355556666666666666665554433 23455554444443
No 184
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=38.01 E-value=6.6e+02 Score=28.66 Aligned_cols=70 Identities=16% Similarity=0.297 Sum_probs=45.7
Q ss_pred HHhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHH
Q 023064 86 LQQQQSEIDRYIAQHTEKVILELEEQRKRQSRMLISAIQEGVANKLKEKD---EEIHRMRKLNWVLQERVKSLF 156 (288)
Q Consensus 86 l~~Q~~EiD~~i~~q~Erlr~~L~e~r~r~~r~ll~avE~~~~~rLReKe---~Eie~a~r~n~eLEErlrql~ 156 (288)
+..+..+++.-+..+.+.+...+++.++.+.. -+..++..--..|..+. ..|..++.+...|++.++++.
T Consensus 719 ~~~~~~~~~~~~d~~i~~i~~~i~~~~~~~~~-~~~~le~~~~~eL~~~GvD~~~I~~l~~~i~~L~~~l~~ie 791 (1201)
T PF12128_consen 719 LKAQWQELEAELDEQIEQIKQEIAAAKQEAKE-QLKELEQQYNQELAGKGVDPERIQQLKQEIEQLEKELKRIE 791 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445666666677777777777776665553 34677776666666664 466777777777777666554
No 185
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=37.93 E-value=2.6e+02 Score=24.02 Aligned_cols=97 Identities=15% Similarity=0.274 Sum_probs=53.1
Q ss_pred hHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHH--HHHHHHHHHhHHHHHHh-hHH-HHH-----HHHHHH-HHH
Q 023064 79 DQDIIFRLQQQQSEIDRYIAQHTEKVILELEEQRKRQS--RMLISAIQEGVANKLKE-KDE-EIH-----RMRKLN-WVL 148 (288)
Q Consensus 79 ~~~l~~~l~~Q~~EiD~~i~~q~Erlr~~L~e~r~r~~--r~ll~avE~~~~~rLRe-Ke~-Eie-----~a~r~n-~eL 148 (288)
|=+|...|.++..++|.=| +.|+..|.+.-+.+. ..++..+-.....+++. ++. -+. .++++. .-+
T Consensus 20 gC~i~~~L~k~~~~v~~~i----~~L~~~L~~~~n~t~~~~~~v~~i~~~~~~~q~~~~~n~~i~~~~s~~l~~~~~~~~ 95 (146)
T PF08702_consen 20 GCGIQDFLDKYERDVDKDI----QELENLLDQISNSTSEAFEYVKNIKDSLRPRQKQAKPNDNIYNQYSKSLRKMIIYIL 95 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred cchHHHHHHHHccchHHHH----HHHHHHHHHHHHhhhhHHHHHHHHHHHHhccccccCCcccHHHHHHHHHHHHHHHHH
Confidence 4467778888888887654 567777777666554 44566676666666665 322 231 223333 333
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh
Q 023064 149 QERVKSLFVENQIWRDLAQTNEATANTLRSN 179 (288)
Q Consensus 149 EErlrql~~E~qaWq~~A~~nEa~A~~Lra~ 179 (288)
|-.+-.-..--+.-|.+-.++.....-|...
T Consensus 96 e~~i~~~~~~I~~Lq~~~~~~~~ki~~Le~~ 126 (146)
T PF08702_consen 96 ETKIINQPSNIRVLQNILRSNRQKIQRLEQD 126 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333345555555555555444333
No 186
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=37.82 E-value=2.3e+02 Score=23.29 Aligned_cols=21 Identities=19% Similarity=0.338 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 023064 138 IHRMRKLNWVLQERVKSLFVE 158 (288)
Q Consensus 138 ie~a~r~n~eLEErlrql~~E 158 (288)
++.+++...++-.+|+.|...
T Consensus 50 ~~~~~~~~~~ik~~lk~l~~~ 70 (151)
T cd00179 50 VQEIKKLAKEIKGKLKELEES 70 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444555555555443
No 187
>PRK15365 type III secretion system chaperone SseA; Provisional
Probab=37.45 E-value=1.8e+02 Score=24.01 Aligned_cols=42 Identities=29% Similarity=0.367 Sum_probs=31.0
Q ss_pred HHHHHHHHHH----HhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 023064 115 QSRMLISAIQ----EGVANKLKEKDEEIHRMRKLNWVLQERVKSLF 156 (288)
Q Consensus 115 ~~r~ll~avE----~~~~~rLReKe~Eie~a~r~n~eLEErlrql~ 156 (288)
.+|..+..++ .+++.-=+||+..+..+...-++||.+++++.
T Consensus 48 kaRE~l~rLd~aFP~G~~~~~qE~~k~m~~i~~~FKQLEt~LKnln 93 (107)
T PRK15365 48 KSRETESILHNLFPQGVAGVNQEAEKDLKKIVSLFKQLEVRLKQLN 93 (107)
T ss_pred HHHHHHHHHHHHCcchhhHHhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3445555555 45556668888888888888999999998875
No 188
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=37.32 E-value=1.9e+02 Score=22.33 Aligned_cols=27 Identities=19% Similarity=0.097 Sum_probs=18.4
Q ss_pred CcccchHHHHHHHHhhhHHHHHHHHHh
Q 023064 74 FSSLLDQDIIFRLQQQQSEIDRYIAQH 100 (288)
Q Consensus 74 ~~s~~~~~l~~~l~~Q~~EiD~~i~~q 100 (288)
+.+..++.|+.-|..-++|++++=-.+
T Consensus 7 ~s~~p~~~Ls~vl~~LqDE~~hm~~e~ 33 (79)
T PF06657_consen 7 PSQSPGEALSEVLKALQDEFGHMKMEH 33 (79)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444557777777888888888765444
No 189
>PF08654 DASH_Dad2: DASH complex subunit Dad2; InterPro: IPR013963 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=37.14 E-value=2.1e+02 Score=23.39 Aligned_cols=16 Identities=19% Similarity=0.524 Sum_probs=9.9
Q ss_pred HHHHHhhHHHHHHHHH
Q 023064 128 ANKLKEKDEEIHRMRK 143 (288)
Q Consensus 128 ~~rLReKe~Eie~a~r 143 (288)
..|+.+|..|++..+.
T Consensus 3 ~~ri~eKk~ELe~L~~ 18 (103)
T PF08654_consen 3 QARIAEKKAELEALKQ 18 (103)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3566677777766543
No 190
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=36.85 E-value=25 Score=31.16 Aligned_cols=44 Identities=18% Similarity=0.243 Sum_probs=26.5
Q ss_pred CccccccccccccceEEeCCCCcccC----cchhhhc-----CCCCcccccccc
Q 023064 236 GRMLCRRCGEKESSVLLLPCRHLCLC----TVCGSCL-----IGSCPVCNFVVD 280 (288)
Q Consensus 236 ~~~~C~iC~~~~~~vlLlPCrHlclC----~~C~~~l-----~~~CPvCr~~i~ 280 (288)
..+.|.||++.... ...||+-...- ..|-... ...|++|+.+..
T Consensus 7 ~~~~CRIC~~~~~~-~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~ 59 (162)
T PHA02825 7 MDKCCWICKDEYDV-VTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYN 59 (162)
T ss_pred CCCeeEecCCCCCC-ccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEE
Confidence 34589999988653 44566422100 1243332 689999998754
No 191
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=36.81 E-value=33 Score=33.35 Aligned_cols=41 Identities=22% Similarity=0.453 Sum_probs=24.6
Q ss_pred cccccccccccceEEeCCCC----cccCcchhhhc---CCCCcccccc
Q 023064 238 MLCRRCGEKESSVLLLPCRH----LCLCTVCGSCL---IGSCPVCNFV 278 (288)
Q Consensus 238 ~~C~iC~~~~~~vlLlPCrH----lclC~~C~~~l---~~~CPvCr~~ 278 (288)
..|.+|+..+..-++..-++ +..|.-|.... -..||.|...
T Consensus 188 ~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~~ 235 (309)
T PRK03564 188 QFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHVVRVKCSNCEQS 235 (309)
T ss_pred CCCCCCCCcchhheeeccCCCCceEEEcCCCCCcccccCccCCCCCCC
Confidence 46888888775443322111 23577777665 5778888763
No 192
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=36.63 E-value=2.4e+02 Score=28.31 Aligned_cols=57 Identities=14% Similarity=0.229 Sum_probs=36.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 023064 100 HTEKVILELEEQRKRQSRMLISAIQEGVANKLKEKDEEIHRMRKLNWVLQERVKSLF 156 (288)
Q Consensus 100 q~Erlr~~L~e~r~r~~r~ll~avE~~~~~rLReKe~Eie~a~r~n~eLEErlrql~ 156 (288)
..++.-......+=|-...-+...|.....+++++..+|++..++..++|.++.++.
T Consensus 313 ~~~~~~k~~~~~ki~~~e~~l~~~E~~l~~e~~~~n~~Le~~~~~l~~~e~~l~~~~ 369 (373)
T COG5019 313 EEERELKKKFTEKIREKEKRLEELEQNLIEERKELNSKLEEIQKKLEDLEKRLEKLK 369 (373)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 444444444444545555566677777777777777777777777777776665543
No 193
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=36.48 E-value=2.4e+02 Score=25.98 Aligned_cols=62 Identities=23% Similarity=0.300 Sum_probs=36.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh---------HHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 023064 91 SEIDRYIAQHTEKVILELEEQRKRQSRMLISAIQEG---------VANKLKEKDEEIHRMRKLNWVLQERVK 153 (288)
Q Consensus 91 ~EiD~~i~~q~Erlr~~L~e~r~r~~r~ll~avE~~---------~~~rLReKe~Eie~a~r~n~eLEErlr 153 (288)
..++. ++.+.|+||..|..-|+++-.....-=.+. |.+=-|+...---.|-+||..||..|+
T Consensus 131 ~~~~~-l~~e~erL~aeL~~er~~~e~q~~~Fe~ER~~W~eEKekVi~YQkQLQ~nYvqMy~rn~~LE~~l~ 201 (202)
T PF06818_consen 131 DELGS-LRREVERLRAELQRERQRREEQRSSFEQERRTWQEEKEKVIRYQKQLQQNYVQMYQRNQALERELR 201 (202)
T ss_pred ccchh-HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444 457889999999988888776665433322 222222222333456677777776665
No 194
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=36.44 E-value=1.9e+02 Score=23.07 Aligned_cols=18 Identities=22% Similarity=0.518 Sum_probs=10.5
Q ss_pred HHhhhHHHHHHHHHhHHH
Q 023064 86 LQQQQSEIDRYIAQHTEK 103 (288)
Q Consensus 86 l~~Q~~EiD~~i~~q~Er 103 (288)
+..--.|+|.+|....++
T Consensus 32 v~~kLneLd~Li~eA~~r 49 (109)
T PF03980_consen 32 VVEKLNELDKLIEEAKER 49 (109)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 444455677776665544
No 195
>COG3120 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.43 E-value=2.2e+02 Score=24.62 Aligned_cols=31 Identities=16% Similarity=0.375 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhHHHHHH
Q 023064 155 LFVENQIWRDLAQTNEATANTLRSNLEQVLA 185 (288)
Q Consensus 155 l~~E~qaWq~~A~~nEa~A~~Lra~L~q~l~ 185 (288)
+--|-..|++++.....+-.+|..++.+++.
T Consensus 94 IDLey~VW~rLs~~a~~~g~TLSetI~~li~ 124 (149)
T COG3120 94 IDLEYAVWQRLSGLARRRGKTLSETIVYLIE 124 (149)
T ss_pred ccHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 4445556777777777666666666666654
No 196
>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]
Probab=36.33 E-value=1.5e+02 Score=32.45 Aligned_cols=50 Identities=22% Similarity=0.196 Sum_probs=25.3
Q ss_pred cccchHHHHHHHHhh--------hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 023064 75 SSLLDQDIIFRLQQQ--------QSEIDRYIAQHTEKVILELEEQRKRQSRMLISAIQ 124 (288)
Q Consensus 75 ~s~~~~~l~~~l~~Q--------~~EiD~~i~~q~Erlr~~L~e~r~r~~r~ll~avE 124 (288)
-+.-.+.+.+.++|| +.-..|-.+++.|=++.+|-+.-|-++|-+|.-=|
T Consensus 558 qsysPqafkFfMEQHVEnvlksyqqr~~Rk~QLEkEM~kagLpd~~q~qMrkmL~QKE 615 (1034)
T KOG0608|consen 558 QSYSPQAFKFFMEQHVENVLKSYQQREKRKKQLEKEMVKAGLPDIMQNQMRKMLQQKE 615 (1034)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhh
Confidence 344455555555554 33444455555555555555555555555443333
No 197
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=36.31 E-value=12 Score=33.16 Aligned_cols=31 Identities=16% Similarity=0.341 Sum_probs=22.1
Q ss_pred ccccccccccccceEEeCCCCcccCcchhhhcCCCCccccccccceEE
Q 023064 237 RMLCRRCGEKESSVLLLPCRHLCLCTVCGSCLIGSCPVCNFVVDASLH 284 (288)
Q Consensus 237 ~~~C~iC~~~~~~vlLlPCrHlclC~~C~~~l~~~CPvCr~~i~~~v~ 284 (288)
.+.|.+| ||+ |.. .. ...||+|..++..+..
T Consensus 134 ~~vC~vC------------Gy~--~~g--e~-P~~CPiCga~k~~F~~ 164 (166)
T COG1592 134 VWVCPVC------------GYT--HEG--EA-PEVCPICGAPKEKFEK 164 (166)
T ss_pred EEEcCCC------------CCc--ccC--CC-CCcCCCCCChHHHhhc
Confidence 4678776 666 444 34 8999999998776653
No 198
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.28 E-value=3.8e+02 Score=25.34 Aligned_cols=87 Identities=18% Similarity=0.189 Sum_probs=45.8
Q ss_pred cchHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 023064 77 LLDQDIIFRLQQQQSEIDRYIAQHTEKVILELEEQRKRQSRMLISAIQEGVANKLKEKDEEIHRMRKLNWVLQERVKSLF 156 (288)
Q Consensus 77 ~~~~~l~~~l~~Q~~EiD~~i~~q~Erlr~~L~e~r~r~~r~ll~avE~~~~~rLReKe~Eie~a~r~n~eLEErlrql~ 156 (288)
++++-....+..++.-||.|++.--.++-..+.+--++-++.. .. +..+..-|++-+.|+.+.+....+-+++.-.+.
T Consensus 15 ~l~d~~~~~i~n~~s~~D~f~q~~r~~~~nS~~efar~lS~~~-~e-~e~l~~~l~etene~~~~neL~~ek~~~q~~ie 92 (246)
T KOG4657|consen 15 SLGDICEKDIHNQRSKIDSFIQSPRRRSMNSLVEFARALSQSQ-VE-LENLKADLRETENELVKVNELKTEKEARQMGIE 92 (246)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466667889999999999987663333333333222111111 11 122234456666666655555444444544555
Q ss_pred HHHHHHHHH
Q 023064 157 VENQIWRDL 165 (288)
Q Consensus 157 ~E~qaWq~~ 165 (288)
+|--+-|..
T Consensus 93 qeik~~q~e 101 (246)
T KOG4657|consen 93 QEIKATQSE 101 (246)
T ss_pred HHHHHHHHH
Confidence 555544443
No 199
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=35.94 E-value=3.1e+02 Score=24.41 Aligned_cols=12 Identities=42% Similarity=0.481 Sum_probs=5.9
Q ss_pred HHHHHHHHhhhH
Q 023064 80 QDIIFRLQQQQS 91 (288)
Q Consensus 80 ~~l~~~l~~Q~~ 91 (288)
+++.++|++...
T Consensus 83 ~~vI~fLq~l~~ 94 (161)
T TIGR02894 83 QDVISFLQNLKT 94 (161)
T ss_pred HHHHHHHHHHHh
Confidence 345555555443
No 200
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=35.69 E-value=80 Score=23.40 Aligned_cols=25 Identities=16% Similarity=0.041 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 023064 143 KLNWVLQERVKSLFVENQIWRDLAQ 167 (288)
Q Consensus 143 r~n~eLEErlrql~~E~qaWq~~A~ 167 (288)
.|.+.||.|+.+.+.+.+.-...++
T Consensus 32 qRLa~LE~rL~~ae~ra~~ae~~~~ 56 (60)
T PF11471_consen 32 QRLAALEQRLQAAEQRAQAAEARAK 56 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555444443
No 201
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=35.49 E-value=3.8e+02 Score=25.18 Aligned_cols=37 Identities=16% Similarity=0.160 Sum_probs=20.2
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023064 129 NKLKEKDEEIHRMRKLNWVLQERVKSLFVENQIWRDL 165 (288)
Q Consensus 129 ~rLReKe~Eie~a~r~n~eLEErlrql~~E~qaWq~~ 165 (288)
+.+++.+-|+..+.++...|++.+..+--+-..-+..
T Consensus 89 ~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~ 125 (239)
T COG1579 89 RELRALNIEIQIAKERINSLEDELAELMEEIEKLEKE 125 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555566666666666665555555554444443
No 202
>PF08202 MIS13: Mis12-Mtw1 protein family; InterPro: IPR013218 The Mtw1 kinetochore complex contains at least four essential components including Mtw1, DSN1, NNF1 and NSL1. All proteins exhibit genetic and two-hybrid interactions and all stabley associate in solution. The function of the complex is unclear though it is involved in chromosome segregation [, ].; GO: 0005515 protein binding
Probab=35.44 E-value=48 Score=31.67 Aligned_cols=26 Identities=31% Similarity=0.409 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023064 142 RKLNWVLQERVKSLFVENQIWRDLAQ 167 (288)
Q Consensus 142 ~r~n~eLEErlrql~~E~qaWq~~A~ 167 (288)
....++|+|+++++..|.++|..+.+
T Consensus 163 ~~~i~~Lee~I~rLk~E~~~W~~~l~ 188 (301)
T PF08202_consen 163 EENIAELEEKIKRLKEERQAWAQLLK 188 (301)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHh
Confidence 45678999999999999999988763
No 203
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=35.42 E-value=2.8e+02 Score=23.65 Aligned_cols=82 Identities=15% Similarity=0.221 Sum_probs=0.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH--
Q 023064 98 AQHTEKVILELEEQRKRQSRMLISAIQEGVANKLKEKDEEIHRMRKLNWVLQERVKSLFVENQIWRDLAQTNEATANT-- 175 (288)
Q Consensus 98 ~~q~Erlr~~L~e~r~r~~r~ll~avE~~~~~rLReKe~Eie~a~r~n~eLEErlrql~~E~qaWq~~A~~nEa~A~~-- 175 (288)
+++.=|+=+.=..-|--++.+-+..+| .++-+||.||..+.++|..||..|.++...-..-+..+...+.....
T Consensus 1 Km~~lk~E~d~a~~r~e~~e~~~K~le----~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E 76 (143)
T PF12718_consen 1 KMQALKLEADNAQDRAEELEAKVKQLE----QENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAE 76 (143)
T ss_pred ChHHHHHhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHH
Q ss_pred -HHHhHHHH
Q 023064 176 -LRSNLEQV 183 (288)
Q Consensus 176 -Lra~L~q~ 183 (288)
|..-++++
T Consensus 77 ~l~rriq~L 85 (143)
T PF12718_consen 77 QLNRRIQLL 85 (143)
T ss_pred HHHhhHHHH
No 204
>PRK05097 Ter macrodomain organizer matS-binding protein; Provisional
Probab=35.35 E-value=60 Score=28.34 Aligned_cols=34 Identities=18% Similarity=0.442 Sum_probs=25.4
Q ss_pred HHHHhhhHHHHHHHHHh-----HHHHHHHHHHHHHHHHH
Q 023064 84 FRLQQQQSEIDRYIAQH-----TEKVILELEEQRKRQSR 117 (288)
Q Consensus 84 ~~l~~Q~~EiD~~i~~q-----~Erlr~~L~e~r~r~~r 117 (288)
..++.+-.+|-..|..| .-+|+.++.-+|+||.-
T Consensus 45 ~~le~~P~~v~~WI~~hm~p~l~nklkQaIRArRKRhFN 83 (150)
T PRK05097 45 LKLENEPVKVLEWIDKHMNPELVNRMKQTIRARRKRHFN 83 (150)
T ss_pred HHhccCcHHHHHHHHHhcCHHHHHHHHHHHHHHHHccCC
Confidence 34566667777777766 46888889999988873
No 205
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=35.25 E-value=5.6e+02 Score=27.03 Aligned_cols=21 Identities=24% Similarity=0.300 Sum_probs=9.8
Q ss_pred HHHHHHHHhhHHHHHHHHHhH
Q 023064 160 QIWRDLAQTNEATANTLRSNL 180 (288)
Q Consensus 160 qaWq~~A~~nEa~A~~Lra~L 180 (288)
+.++......+..+..|+.+|
T Consensus 293 r~~qe~lqaSqq~~~~L~~EL 313 (546)
T PF07888_consen 293 RSAQEQLQASQQEAELLRKEL 313 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444
No 206
>PHA02562 46 endonuclease subunit; Provisional
Probab=35.15 E-value=4.8e+02 Score=26.23 Aligned_cols=40 Identities=8% Similarity=0.067 Sum_probs=22.3
Q ss_pred HHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023064 124 QEGVANKLKEKDEEIHRMRKLNWVLQERVKSLFVENQIWR 163 (288)
Q Consensus 124 E~~~~~rLReKe~Eie~a~r~n~eLEErlrql~~E~qaWq 163 (288)
+......+.+.+.|++.+.++...|+..+.++..+-..+.
T Consensus 208 ~~~~~~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~ 247 (562)
T PHA02562 208 RKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLV 247 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333344555555666666666666666666655555553
No 207
>PRK14139 heat shock protein GrpE; Provisional
Probab=34.97 E-value=1.1e+02 Score=27.65 Aligned_cols=29 Identities=17% Similarity=0.032 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023064 137 EIHRMRKLNWVLQERVKSLFVENQIWRDL 165 (288)
Q Consensus 137 Eie~a~r~n~eLEErlrql~~E~qaWq~~ 165 (288)
+|+.+..++.+|.+++.++.+|.+..+++
T Consensus 40 ~l~~le~e~~elkd~~lR~~AefeN~rKR 68 (185)
T PRK14139 40 ELAEAEAKAAELQDSFLRAKAETENVRRR 68 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444443
No 208
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=34.90 E-value=7.8 Score=37.89 Aligned_cols=47 Identities=26% Similarity=0.639 Sum_probs=33.9
Q ss_pred CccccccccccccceEEe-CCCCcccCcchhhhc---CCCCccccccccceE
Q 023064 236 GRMLCRRCGEKESSVLLL-PCRHLCLCTVCGSCL---IGSCPVCNFVVDASL 283 (288)
Q Consensus 236 ~~~~C~iC~~~~~~vlLl-PCrHlclC~~C~~~l---~~~CPvCr~~i~~~v 283 (288)
...+|.+|.+=-.+...+ =|-|- +|+.|--.. ...||.|...|.++.
T Consensus 14 ~~itC~LC~GYliDATTI~eCLHT-FCkSCivk~l~~~~~CP~C~i~ih~t~ 64 (331)
T KOG2660|consen 14 PHITCRLCGGYLIDATTITECLHT-FCKSCIVKYLEESKYCPTCDIVIHKTH 64 (331)
T ss_pred cceehhhccceeecchhHHHHHHH-HHHHHHHHHHHHhccCCccceeccCcc
Confidence 345799998755544333 47777 788886554 799999999998774
No 209
>COG4357 Zinc finger domain containing protein (CHY type) [Function unknown]
Probab=34.74 E-value=20 Score=29.41 Aligned_cols=44 Identities=27% Similarity=0.631 Sum_probs=30.1
Q ss_pred ccccccccccceEEeCCCC------cccCcchhhhc-------CCCCccccccccce
Q 023064 239 LCRRCGEKESSVLLLPCRH------LCLCTVCGSCL-------IGSCPVCNFVVDAS 282 (288)
Q Consensus 239 ~C~iC~~~~~~vlLlPCrH------lclC~~C~~~l-------~~~CPvCr~~i~~~ 282 (288)
.|--|.+.-.+--|.|=++ ..+|..|...+ ...||.|+++++-.
T Consensus 37 aCy~CHdel~~Hpf~p~~~~~~~~~~iiCGvC~~~LT~~EY~~~~~Cp~C~spFNp~ 93 (105)
T COG4357 37 ACYHCHDELEDHPFEPWGLQEFNPKAIICGVCRKLLTRAEYGMCGSCPYCQSPFNPG 93 (105)
T ss_pred hHHHHHhHHhcCCCccCChhhcCCccEEhhhhhhhhhHHHHhhcCCCCCcCCCCCcc
Confidence 4555666666666666554 35677887665 57899999998754
No 210
>KOG3976 consensus Mitochondrial F1F0-ATP synthase, subunit b/ATP4 [Energy production and conversion]
Probab=34.68 E-value=4.1e+02 Score=25.24 Aligned_cols=100 Identities=25% Similarity=0.302 Sum_probs=72.0
Q ss_pred HHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-HHhhHHHHHHHHHHHHHHH------HHHHHHHH
Q 023064 85 RLQQQQSEIDRYIAQHTEKVILELEEQRKRQSRMLISAIQEGVANK-LKEKDEEIHRMRKLNWVLQ------ERVKSLFV 157 (288)
Q Consensus 85 ~l~~Q~~EiD~~i~~q~Erlr~~L~e~r~r~~r~ll~avE~~~~~r-LReKe~Eie~a~r~n~eLE------Erlrql~~ 157 (288)
-+..-.--||.+.--.+++.-..+++.|+.|..++..+++...... |-+|-+=+-...|.|.+|+ |++-.++.
T Consensus 111 ~~k~~g~ai~~~adk~~~k~~~~~~~arq~~ik~i~d~id~~~sqq~~~~~~~~lfd~~keni~l~lE~~yre~~~~v~~ 190 (247)
T KOG3976|consen 111 AIKKLGPAIADWADKLIEKILSQLEEARQAHIKAISDAIDTEKSQQALASKTEYLFDVSKENIALQLEATYREQLVRVAK 190 (247)
T ss_pred HHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 4567778899999999999999999999999999999998654322 3333344555667776665 45667888
Q ss_pred HHHHHHHHHHhhHHHHHHHHHhHHHHHHh
Q 023064 158 ENQIWRDLAQTNEATANTLRSNLEQVLAH 186 (288)
Q Consensus 158 E~qaWq~~A~~nEa~A~~Lra~L~q~l~q 186 (288)
|.-.|-+-=.+.|++...+. -+|++..
T Consensus 191 E~K~~lDy~v~~e~~~rr~e--qe~l~ks 217 (247)
T KOG3976|consen 191 EVKRRLDYWVETEASKRRLE--QEQLLKS 217 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 88888888888887665332 2345443
No 211
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=34.46 E-value=3.5e+02 Score=24.38 Aligned_cols=39 Identities=23% Similarity=0.240 Sum_probs=34.7
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023064 128 ANKLKEKDEEIHRMRKLNWVLQERVKSLFVENQIWRDLA 166 (288)
Q Consensus 128 ~~rLReKe~Eie~a~r~n~eLEErlrql~~E~qaWq~~A 166 (288)
-.|++..+.+|....-.+..|+.++.++..|-..|...-
T Consensus 92 k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf 130 (201)
T PF13851_consen 92 KARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKF 130 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888899999999999999999999999999998763
No 212
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=34.21 E-value=3.5e+02 Score=25.14 Aligned_cols=29 Identities=21% Similarity=0.295 Sum_probs=12.8
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 023064 130 KLKEKDEEIHRMRKLNWVLQERVKSLFVE 158 (288)
Q Consensus 130 rLReKe~Eie~a~r~n~eLEErlrql~~E 158 (288)
.|++|+.+++.+..+..+|.-+...+..|
T Consensus 166 el~~~~~~Le~~~~~~~al~Kq~e~~~~E 194 (216)
T KOG1962|consen 166 ELEKKQKKLEKAQKKVDALKKQSEGLQDE 194 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccH
Confidence 34444444444444444444444333333
No 213
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=34.03 E-value=8.7 Score=36.74 Aligned_cols=44 Identities=25% Similarity=0.465 Sum_probs=31.9
Q ss_pred ccccccc----cccceEEeCCCCcccCcchhhhc---CCCCccccccccceEE
Q 023064 239 LCRRCGE----KESSVLLLPCRHLCLCTVCGSCL---IGSCPVCNFVVDASLH 284 (288)
Q Consensus 239 ~C~iC~~----~~~~vlLlPCrHlclC~~C~~~l---~~~CPvCr~~i~~~v~ 284 (288)
-|.+|.+ ....+-++||+|.-- ..|...+ .-.||+|.. +....+
T Consensus 160 ncPic~e~l~~s~~~~~~~~CgH~~h-~~cf~e~~~~~y~CP~C~~-~~d~~~ 210 (276)
T KOG1940|consen 160 NCPICKEYLFLSFEDAGVLKCGHYMH-SRCFEEMICEGYTCPICSK-PGDMSH 210 (276)
T ss_pred CCchhHHHhccccccCCccCcccchH-HHHHHHHhccCCCCCcccc-hHHHHH
Confidence 4888876 466777889999965 6666664 578999988 554443
No 214
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=34.03 E-value=17 Score=21.92 Aligned_cols=18 Identities=33% Similarity=0.897 Sum_probs=11.5
Q ss_pred Ccchhhhc---CCCCcccccc
Q 023064 261 CTVCGSCL---IGSCPVCNFV 278 (288)
Q Consensus 261 C~~C~~~l---~~~CPvCr~~ 278 (288)
|..|...+ ...||.|..+
T Consensus 2 Cp~CG~~~~~~~~fC~~CG~~ 22 (23)
T PF13240_consen 2 CPNCGAEIEDDAKFCPNCGTP 22 (23)
T ss_pred CcccCCCCCCcCcchhhhCCc
Confidence 55666665 5677777654
No 215
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=33.75 E-value=2.5e+02 Score=22.55 Aligned_cols=26 Identities=23% Similarity=0.288 Sum_probs=12.1
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHH
Q 023064 132 KEKDEEIHRMRKLNWVLQERVKSLFV 157 (288)
Q Consensus 132 ReKe~Eie~a~r~n~eLEErlrql~~ 157 (288)
.+|+.||.++...+..|...+.++..
T Consensus 77 ~~k~~ei~~l~~~l~~l~~~~~k~e~ 102 (126)
T PF13863_consen 77 EEKEAEIKKLKAELEELKSEISKLEE 102 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555444444444444443
No 216
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=33.69 E-value=2e+02 Score=21.44 Aligned_cols=49 Identities=14% Similarity=0.138 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHH
Q 023064 135 DEEIHRMRKLNWVLQERVKSLFVENQIWRDLAQTNEATANTLRSNLEQV 183 (288)
Q Consensus 135 e~Eie~a~r~n~eLEErlrql~~E~qaWq~~A~~nEa~A~~Lra~L~q~ 183 (288)
.+.+.+...+..++++++..++.-..+....-+.+..-...+.+++..+
T Consensus 5 ~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~kW~ 53 (71)
T PF10779_consen 5 KEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSNTKWI 53 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555655555554444443344444444444444443
No 217
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=33.69 E-value=4.5e+02 Score=25.43 Aligned_cols=8 Identities=13% Similarity=0.750 Sum_probs=4.3
Q ss_pred HHHHHHHH
Q 023064 136 EEIHRMRK 143 (288)
Q Consensus 136 ~Eie~a~r 143 (288)
..||++.|
T Consensus 122 DdLErakR 129 (333)
T KOG1853|consen 122 DDLERAKR 129 (333)
T ss_pred cHHHHhhh
Confidence 45565544
No 218
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=33.66 E-value=4e+02 Score=27.98 Aligned_cols=76 Identities=17% Similarity=0.179 Sum_probs=36.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 023064 93 IDRYIAQHTEKVILELEEQRKRQSRMLISAIQEGVANKLKEKDEEIHRMRKLNWVLQERVKSLFVENQIWRDLAQTNEAT 172 (288)
Q Consensus 93 iD~~i~~q~Erlr~~L~e~r~r~~r~ll~avE~~~~~rLReKe~Eie~a~r~n~eLEErlrql~~E~qaWq~~A~~nEa~ 172 (288)
+|+||++- |++.--+|+.+|-... |++.+++|.++..+...|+-+|+...--.++-...-+..|+-
T Consensus 27 e~ef~rl~--k~fed~~ek~~r~~ae------------~~~~~~~L~Ka~tk~~~ldvklkha~~~vda~ik~rr~ae~d 92 (604)
T KOG3564|consen 27 EDEFIRLR--KDFEDFEEKWKRTDAE------------LGKYKDLLAKAETKRSALDVKLKHARNQVDAEIKRRRRAEAD 92 (604)
T ss_pred HHHHHHHH--HHHHHHHHHHhhhhHH------------HHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhh
Confidence 56666543 5556666666665432 344455666666666666555544433333332222233333
Q ss_pred HHHHHHhHHH
Q 023064 173 ANTLRSNLEQ 182 (288)
Q Consensus 173 A~~Lra~L~q 182 (288)
-+.|....++
T Consensus 93 ~~~~E~~i~~ 102 (604)
T KOG3564|consen 93 CEKLETQIQL 102 (604)
T ss_pred HHHHHHHHHH
Confidence 3344444443
No 219
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=33.65 E-value=4.1e+02 Score=25.95 Aligned_cols=52 Identities=25% Similarity=0.310 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHh
Q 023064 135 DEEIHRMRKLNWVLQERVKSLFVENQIWRDLAQTNEATANTLRSNLEQVLAH 186 (288)
Q Consensus 135 e~Eie~a~r~n~eLEErlrql~~E~qaWq~~A~~nEa~A~~Lra~L~q~l~q 186 (288)
.+||.+...+...|+.+++++.+|+..-+..-......=..|.++|..+..+
T Consensus 233 QEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdk 284 (306)
T PF04849_consen 233 QEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDK 284 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999998888777655555555666666555444
No 220
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=33.48 E-value=3.1e+02 Score=26.25 Aligned_cols=56 Identities=20% Similarity=0.304 Sum_probs=31.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Q 023064 92 EIDRYIAQHTEKVILELEEQRKRQSRMLISAIQEGVANKLKEKDEEIHRMRKLNWVLQ 149 (288)
Q Consensus 92 EiD~~i~~q~Erlr~~L~e~r~r~~r~ll~avE~~~~~rLReKe~Eie~a~r~n~eLE 149 (288)
+|..-|+.-...+...++..++. ..=+.+=|...-.++..|..|++|..+|...|+
T Consensus 162 ~iE~~l~~ai~~~~~~~~~~~~~--l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq 217 (267)
T PF10234_consen 162 EIEKALKEAIKAVQQQLQQTQQQ--LNNLASDEANLEAKIEKKKQELERNQKRLQSLQ 217 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555444421 122334445555667777777888777776554
No 221
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=33.38 E-value=4.4e+02 Score=25.26 Aligned_cols=92 Identities=21% Similarity=0.272 Sum_probs=0.0
Q ss_pred HHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023064 83 IFRLQQQQSEIDRYIAQHTEKVILELEEQRKRQSRMLISAIQEGVANKLKEKDEEIHRMRKLNWVLQERVKSLFVENQIW 162 (288)
Q Consensus 83 ~~~l~~Q~~EiD~~i~~q~Erlr~~L~e~r~r~~r~ll~avE~~~~~rLReKe~Eie~a~r~n~eLEErlrql~~E~qaW 162 (288)
...|++...|++..=+...+.+|..|.+.. ..++ .-.+.|-+.+.+++...-+..++.++...+..|-+.+
T Consensus 193 ~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~--------~~i~-~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~ 263 (325)
T PF08317_consen 193 LENLKQLVEEIESCDQEELEALRQELAEQK--------EEIE-AKKKELAELQEELEELEEKIEELEEQKQELLAEIAEA 263 (325)
T ss_pred HHHHHHHHhhhhhcCHHHHHHHHHHHHHHH--------HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHH----hhHHHHHHHHHhHHHH
Q 023064 163 RDLAQ----TNEATANTLRSNLEQV 183 (288)
Q Consensus 163 q~~A~----~nEa~A~~Lra~L~q~ 183 (288)
+++-. ....-+..|++.++.+
T Consensus 264 ~~~~~~~r~~t~~Ev~~Lk~~~~~L 288 (325)
T PF08317_consen 264 EKIREECRGWTRSEVKRLKAKVDAL 288 (325)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHH
No 222
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=33.26 E-value=1.6e+02 Score=21.51 Aligned_cols=39 Identities=23% Similarity=0.332 Sum_probs=25.8
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023064 129 NKLKEKDEEIHRMRKLNWVLQERVKSLFVENQIWRDLAQ 167 (288)
Q Consensus 129 ~rLReKe~Eie~a~r~n~eLEErlrql~~E~qaWq~~A~ 167 (288)
..+.+.+.+++....+|.+|++.+..+..--..=..+|+
T Consensus 24 ~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~~AR 62 (80)
T PF04977_consen 24 QEIAELQKEIEELKKENEELKEEIERLKNDPDYIEKVAR 62 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 345666778888888888888888888433333344443
No 223
>PRK02224 chromosome segregation protein; Provisional
Probab=32.87 E-value=6.5e+02 Score=27.08 Aligned_cols=45 Identities=29% Similarity=0.297 Sum_probs=33.8
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 023064 131 LKEKDEEIHRMRKLNWVLQERVKSLFVENQIWRDLAQTNEATANT 175 (288)
Q Consensus 131 LReKe~Eie~a~r~n~eLEErlrql~~E~qaWq~~A~~nEa~A~~ 175 (288)
+-.+.+.++....+..+|++.+..+..+.+.|...|.+-++....
T Consensus 525 ~~~~~e~le~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~ 569 (880)
T PRK02224 525 IAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEE 569 (880)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 334446777788888899999999999999999877665544444
No 224
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=32.63 E-value=5.9e+02 Score=28.45 Aligned_cols=33 Identities=21% Similarity=0.248 Sum_probs=15.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 023064 92 EIDRYIAQHTEKVILELEEQRKRQSRMLISAIQ 124 (288)
Q Consensus 92 EiD~~i~~q~Erlr~~L~e~r~r~~r~ll~avE 124 (288)
|+.+.=|.+.||=-++.+|+-+.....|-+-+|
T Consensus 346 e~eqkEreE~ekkererqEqErk~qlElekqLe 378 (1118)
T KOG1029|consen 346 EVEQKEREEEEKKERERQEQERKAQLELEKQLE 378 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444455544444444444444
No 225
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.44 E-value=32 Score=32.90 Aligned_cols=49 Identities=18% Similarity=0.289 Sum_probs=30.8
Q ss_pred Ccccccccc----ccccceEEeCCCCcccCcchhhhc-CCCCccccccccceEEE
Q 023064 236 GRMLCRRCG----EKESSVLLLPCRHLCLCTVCGSCL-IGSCPVCNFVVDASLHV 285 (288)
Q Consensus 236 ~~~~C~iC~----~~~~~vlLlPCrHlclC~~C~~~l-~~~CPvCr~~i~~~v~V 285 (288)
....|+|=+ +..+-++|++|||.- -..=...+ ...|++|.+.....=.|
T Consensus 110 a~fiCPvtgleMng~~~F~~l~~CGcV~-SerAlKeikas~C~~C~a~y~~~dvI 163 (293)
T KOG3113|consen 110 ARFICPVTGLEMNGKYRFCALRCCGCVF-SERALKEIKASVCHVCGAAYQEDDVI 163 (293)
T ss_pred ceeecccccceecceEEEEEEeccceec-cHHHHHHhhhccccccCCcccccCeE
Confidence 344566644 345678899999983 11111222 78999999987655443
No 226
>PRK14143 heat shock protein GrpE; Provisional
Probab=32.38 E-value=2.5e+02 Score=26.28 Aligned_cols=25 Identities=24% Similarity=0.336 Sum_probs=14.7
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHH
Q 023064 90 QSEIDRYIAQHTEKVILELEEQRKRQ 115 (288)
Q Consensus 90 ~~EiD~~i~~q~Erlr~~L~e~r~r~ 115 (288)
..++.. +..+.+.|+..+++.+.+.
T Consensus 66 ~~~~~~-l~~el~~l~~e~~elkd~~ 90 (238)
T PRK14143 66 AARLAQ-LEQELESLKQELEELNSQY 90 (238)
T ss_pred hhHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 345554 4456667777777665443
No 227
>PF14282 FlxA: FlxA-like protein
Probab=31.98 E-value=2.3e+02 Score=22.89 Aligned_cols=53 Identities=21% Similarity=0.257 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HH---HHHHHHHHhhHHHHHHHHHhHHHHHHhc
Q 023064 135 DEEIHRMRKLNWVLQERVKSLFV-EN---QIWRDLAQTNEATANTLRSNLEQVLAHV 187 (288)
Q Consensus 135 e~Eie~a~r~n~eLEErlrql~~-E~---qaWq~~A~~nEa~A~~Lra~L~q~l~q~ 187 (288)
+..|+++.++...|.+.|+.|.. +. ..-+...+.-.+-...|.+.|.++..+.
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~ 74 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQ 74 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66788888888888888888877 22 2334444444555556666666665543
No 228
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=31.97 E-value=5.9e+02 Score=26.33 Aligned_cols=87 Identities=17% Similarity=0.218 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 023064 101 TEKVILELEEQRKRQSRMLISAIQ--EGVANKLKEKDEEIHRMRKLNWVLQERVKSLFVENQIWRDLAQTNEATANTLRS 178 (288)
Q Consensus 101 ~Erlr~~L~e~r~r~~r~ll~avE--~~~~~rLReKe~Eie~a~r~n~eLEErlrql~~E~qaWq~~A~~nEa~A~~Lra 178 (288)
.+.+-..|...|-+|.-.|.++-. ..+...|++|-.-++++......+++|...+..|-+.=+-.-..--+.+-.|+.
T Consensus 409 V~~ii~~Lt~~~~~~L~~Ik~SprYvdrl~~~L~qk~~~~~k~~~~~~~l~~kr~e~~~e~~~l~pkL~~l~~~Tr~Lq~ 488 (507)
T PF05600_consen 409 VEEIISQLTNPRTQHLFMIKSSPRYVDRLVESLQQKLKQEEKLRRKREDLEEKRQEAQEEQQELEPKLDALVERTRELQK 488 (507)
T ss_pred HHHHHHHhcCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 344444555566666666654422 234566888888888888888888888877776665554444334444455666
Q ss_pred hHHHHHHhc
Q 023064 179 NLEQVLAHV 187 (288)
Q Consensus 179 ~L~q~l~q~ 187 (288)
.+++-+.+.
T Consensus 489 ~iE~~ISk~ 497 (507)
T PF05600_consen 489 QIEADISKR 497 (507)
T ss_pred HHHHHHHHH
Confidence 666666553
No 229
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=31.95 E-value=1.7e+02 Score=24.47 Aligned_cols=17 Identities=29% Similarity=0.481 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 023064 108 LEEQRKRQSRMLISAIQ 124 (288)
Q Consensus 108 L~e~r~r~~r~ll~avE 124 (288)
+.++-+|+++-++.-.+
T Consensus 62 ~e~K~~r~i~~ml~~~~ 78 (108)
T COG3937 62 LEEKIPRKIEEMLSDLE 78 (108)
T ss_pred HHHhhhHHHHHHHhhcc
Confidence 34444555555555555
No 230
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=31.64 E-value=29 Score=27.64 Aligned_cols=30 Identities=23% Similarity=0.472 Sum_probs=20.6
Q ss_pred eEEeCCCCcccCcchhhhc------CCCCcccccccc
Q 023064 250 VLLLPCRHLCLCTVCGSCL------IGSCPVCNFVVD 280 (288)
Q Consensus 250 vlLlPCrHlclC~~C~~~l------~~~CPvCr~~i~ 280 (288)
+++--|+|. +=..|.... ...||+||++..
T Consensus 47 lv~g~C~H~-FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 47 LVWGKCSHN-FHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred eeeccCccH-HHHHHHHHHHccccCCCCCCCcCCeee
Confidence 456668887 556664332 479999998753
No 231
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=31.54 E-value=28 Score=33.75 Aligned_cols=40 Identities=20% Similarity=0.504 Sum_probs=23.8
Q ss_pred ccccccccccceEEeCC----CC-cccCcchhhhc---CCCCcccccc
Q 023064 239 LCRRCGEKESSVLLLPC----RH-LCLCTVCGSCL---IGSCPVCNFV 278 (288)
Q Consensus 239 ~C~iC~~~~~~vlLlPC----rH-lclC~~C~~~l---~~~CPvCr~~ 278 (288)
.|.+|+..+..-++..- |+ +..|.-|.... -..||.|...
T Consensus 186 ~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~~ 233 (305)
T TIGR01562 186 LCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHYVRVKCSHCEES 233 (305)
T ss_pred cCCCCCChhhhhhhcccCCCCCceEEEcCCCCCcccccCccCCCCCCC
Confidence 67777777754433322 11 23577776654 5677877764
No 232
>PF08112 ATP-synt_E_2: ATP synthase epsilon subunit; InterPro: IPR012508 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. A-ATPases (or A1A0-ATPase) (3.6.3.14 from EC) are found exclusively in Archaea and display a close resemblance in structure and subunit composition with V-ATPases, although their function in both ATP synthesis and ATP hydrolysis is closer to that of F-ATPases []. A-ATPases are composed of two linked complexes: the A1 complex consisting of seven subunits contains the catalytic core that synthesizes/hydrolyses ATP, while the A0 complex consisting of at least two subunits forms the membrane-spanning pore []. The rotary motor in A-ATPases is composed of only two subunits, the stator subunit I and the rotor subunit C []. A-ATPases may have arisen as an adaptation to the different cellular needs and the more extreme environmental conditions faced by Archaeal species. The epsilon subunit is the smallest (7 kDa) of those found in the A1 complex. Unlike the A, B and C subunits, the epsilon subunit does not have a homologous counterpart in F- or V-ATPases []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0015986 ATP synthesis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain
Probab=31.49 E-value=2.1e+02 Score=21.03 Aligned_cols=47 Identities=23% Similarity=0.467 Sum_probs=30.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHH
Q 023064 91 SEIDRYIAQHTEKVILELEEQRKRQSRMLISAIQEGVANKLKEKDEEIHRMRKLN 145 (288)
Q Consensus 91 ~EiD~~i~~q~Erlr~~L~e~r~r~~r~ll~avE~~~~~rLReKe~Eie~a~r~n 145 (288)
.-||.||.+ ||.-|.++. ..+++.+-.-..+-|..+-.+||..+|+.
T Consensus 7 ~~~d~yI~~----Lk~kLd~Kk----~Eil~~ln~EY~kiLk~r~~~lEevKrk~ 53 (56)
T PF08112_consen 7 STIDKYISI----LKSKLDEKK----SEILSNLNMEYEKILKQRRKELEEVKRKA 53 (56)
T ss_pred hhHHHHHHH----HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457778765 566666666 35556555556666777777777777653
No 233
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=31.45 E-value=8.2e+02 Score=28.05 Aligned_cols=79 Identities=20% Similarity=0.146 Sum_probs=58.7
Q ss_pred HHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHH------HhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023064 91 SEIDRYIAQ--HTEKVILELEEQRKRQSRMLISAIQ------EGVANKLKEKDEEIHRMRKLNWVLQERVKSLFVENQIW 162 (288)
Q Consensus 91 ~EiD~~i~~--q~Erlr~~L~e~r~r~~r~ll~avE------~~~~~rLReKe~Eie~a~r~n~eLEErlrql~~E~qaW 162 (288)
..=|+.+++ ++-++-..|+|.+.+-+..+.+.+= .....+.+..+++|.++.+++++||+.-+.|..|...-
T Consensus 369 Lts~ralkllLEnrrlt~tleelqsss~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl 448 (1195)
T KOG4643|consen 369 LTSDRALKLLLENRRLTGTLEELQSSSYEELISKHLELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKL 448 (1195)
T ss_pred hhhHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333556654 4557777888888887777766542 23566778888999999999999999999999998887
Q ss_pred HHHHHhh
Q 023064 163 RDLAQTN 169 (288)
Q Consensus 163 q~~A~~n 169 (288)
+..-..+
T Consensus 449 ~~e~~t~ 455 (1195)
T KOG4643|consen 449 LEETSTV 455 (1195)
T ss_pred HHHHHHH
Confidence 7664443
No 234
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=31.44 E-value=4.8e+02 Score=25.05 Aligned_cols=65 Identities=14% Similarity=0.143 Sum_probs=43.7
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023064 98 AQHTEKVILELEEQRKRQSRMLISAIQEGVANKLKEKDEEIHRMRKLNWVLQERVKSLFVENQIWRDLAQ 167 (288)
Q Consensus 98 ~~q~Erlr~~L~e~r~r~~r~ll~avE~~~~~rLReKe~Eie~a~r~n~eLEErlrql~~E~qaWq~~A~ 167 (288)
..+...+...+++-=.+++..++.+.+.. ..++ .++..+......|...+-++...++.+...+.
T Consensus 20 ~~~~~~l~~ql~~La~~~y~~fi~~~~~~--~~i~---~~~~~~~~~l~~L~~~l~~L~~~~~~f~~~~~ 84 (338)
T PF04124_consen 20 SEEIASLDAQLQSLAFRNYKTFIDNAECS--SDIR---QELSSLSDSLDSLLDSLPELDEACQRFSSKAQ 84 (338)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHH--HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677788888899999999886644 2333 35556666666666666666666666666554
No 235
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=31.24 E-value=1.4e+02 Score=25.52 Aligned_cols=54 Identities=26% Similarity=0.414 Sum_probs=34.4
Q ss_pred HHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 023064 82 IIFRLQQQQSEIDRYIAQHTEKVILELEEQRKRQSRMLISAIQEGVANKLKEKDEEIHRMRKLNWVLQERV 152 (288)
Q Consensus 82 l~~~l~~Q~~EiD~~i~~q~Erlr~~L~e~r~r~~r~ll~avE~~~~~rLReKe~Eie~a~r~n~eLEErl 152 (288)
+.++++.|+..|.-| .+..++|...+..+- .-..+||+ +|+.+.+.|..||+|+
T Consensus 78 l~a~~~e~qsli~~y-E~~~~kLe~e~~~Kd-------------sei~~Lr~---~L~~~~~~n~~Lekrl 131 (131)
T PF04859_consen 78 LAAEIQEQQSLIKTY-EIVVKKLEAELRAKD-------------SEIDRLRE---KLDELNRANKSLEKRL 131 (131)
T ss_pred cccchHHHHHHHHHH-HHHHHHHHHHHHHHH-------------HHHHHHHH---HHHHHHHHHHHhhccC
Confidence 456676666666544 344555555555443 22356787 7888888888999874
No 236
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=31.20 E-value=5e+02 Score=25.25 Aligned_cols=85 Identities=26% Similarity=0.258 Sum_probs=47.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 023064 99 QHTEKVILELEEQRKRQSRMLISAIQEGVANKLKEKDEEIHRMRKLNWVLQERVKSLFVENQIWRDLAQTNEATANTLRS 178 (288)
Q Consensus 99 ~q~Erlr~~L~e~r~r~~r~ll~avE~~~~~rLReKe~Eie~a~r~n~eLEErlrql~~E~qaWq~~A~~nEa~A~~Lra 178 (288)
.|.|+|.+.= .+|+=|+.+|=+|++.. -++.-+...|+..+.|.|.-|-|-...+..-.+--.-.++..|..++.|..
T Consensus 25 ~QldkLkKE~-qQrQfQleSlEAaLqKQ-KqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEg 102 (307)
T PF10481_consen 25 QQLDKLKKER-QQRQFQLESLEAALQKQ-KQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEG 102 (307)
T ss_pred HHHHHHHHHH-HHHHHhHHHHHHHHHHH-HHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHH
Confidence 3555555432 23444444444333321 222333335666777777777777777766666666666677777777766
Q ss_pred hHHHHHH
Q 023064 179 NLEQVLA 185 (288)
Q Consensus 179 ~L~q~l~ 185 (288)
.|.....
T Consensus 103 Ql~s~Kk 109 (307)
T PF10481_consen 103 QLNSCKK 109 (307)
T ss_pred HHHHHHH
Confidence 6655433
No 237
>PF05983 Med7: MED7 protein; InterPro: IPR009244 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This family consists of several eukaryotic proteins, which are homologues of the yeast MED7 protein. Activation of gene transcription in metazoans is a multistep process that is triggered by factors that recognise transcriptional enhancer sites in DNA. These factors work with co-activators such as MED7 to direct transcriptional initiation by the RNA polymerase II apparatus [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 3FBI_C 3FBN_A 1YKH_A 1YKE_A.
Probab=31.12 E-value=3.2e+02 Score=23.90 Aligned_cols=48 Identities=29% Similarity=0.294 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 023064 102 EKVILELEEQRKRQSRMLISAIQEGVANKLKEKDEEIHRMRKLNWVLQERV 152 (288)
Q Consensus 102 Erlr~~L~e~r~r~~r~ll~avE~~~~~rLReKe~Eie~a~r~n~eLEErl 152 (288)
-.|...|-+-|-.|+|..|.. ..-..+++|.++++.+++...+.++.|
T Consensus 114 ~NmhhllNeyRPhQARetLi~---~me~Ql~~kr~~i~~i~~~~~~~~~~l 161 (162)
T PF05983_consen 114 INMHHLLNEYRPHQARETLIM---MMEEQLEEKREEIEEIRKVCEKAREVL 161 (162)
T ss_dssp HHHHHHHHHTHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356678888999999876543 334668899999999999888877765
No 238
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=31.10 E-value=25 Score=25.40 Aligned_cols=17 Identities=29% Similarity=1.040 Sum_probs=12.6
Q ss_pred cCcchhhhc---CCCCcccc
Q 023064 260 LCTVCGSCL---IGSCPVCN 276 (288)
Q Consensus 260 lC~~C~~~l---~~~CPvCr 276 (288)
.|.+|...+ +..||.|.
T Consensus 31 FC~dCD~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 31 FCIDCDVFIHETLHNCPGCE 50 (51)
T ss_dssp B-HHHHHTTTTTS-SSSTT-
T ss_pred cccCcChhhhccccCCcCCC
Confidence 799999887 89999995
No 239
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=30.99 E-value=3.5e+02 Score=26.03 Aligned_cols=85 Identities=20% Similarity=0.244 Sum_probs=36.4
Q ss_pred HHHHHHHhhhHHHHHHHHHhHHHHHH----HHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 023064 81 DIIFRLQQQQSEIDRYIAQHTEKVIL----ELEEQRKRQSRMLISAIQEGVANKLKEKDEEIHRMRKLNWVLQERVKSLF 156 (288)
Q Consensus 81 ~l~~~l~~Q~~EiD~~i~~q~Erlr~----~L~e~r~r~~r~ll~avE~~~~~rLReKe~Eie~a~r~n~eLEErlrql~ 156 (288)
.+..++++-..|.|.|...- +++.. .-....-..-..-+..-|......|++.|.|-+.+.+...+|++..+.+.
T Consensus 13 ~l~~~~~~~~~E~~~Y~~fL-~~l~~~~~~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~ 91 (314)
T PF04111_consen 13 QLDKQLEQAEKERDTYQEFL-KKLEEESDSEEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELD 91 (314)
T ss_dssp ------------------------------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666667777766432 11110 00001111112224555567778888888888888888888888777774
Q ss_pred -HHHHHHHHHH
Q 023064 157 -VENQIWRDLA 166 (288)
Q Consensus 157 -~E~qaWq~~A 166 (288)
.|.+.|+...
T Consensus 92 ~eE~~~~~~~n 102 (314)
T PF04111_consen 92 EEEEEYWREYN 102 (314)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 4556776653
No 240
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=30.80 E-value=28 Score=21.63 Aligned_cols=18 Identities=33% Similarity=1.003 Sum_probs=11.1
Q ss_pred Ccchhhhc---CCCCcccccc
Q 023064 261 CTVCGSCL---IGSCPVCNFV 278 (288)
Q Consensus 261 C~~C~~~l---~~~CPvCr~~ 278 (288)
|..|...+ ...||.|.-.
T Consensus 3 CP~C~~~V~~~~~~Cp~CG~~ 23 (26)
T PF10571_consen 3 CPECGAEVPESAKFCPHCGYD 23 (26)
T ss_pred CCCCcCCchhhcCcCCCCCCC
Confidence 55666555 5777777543
No 241
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=30.55 E-value=30 Score=33.95 Aligned_cols=44 Identities=32% Similarity=0.686 Sum_probs=34.9
Q ss_pred cccccccc----cccceEEeCCCCcccCcchhhhc---CCCCccccccccce
Q 023064 238 MLCRRCGE----KESSVLLLPCRHLCLCTVCGSCL---IGSCPVCNFVVDAS 282 (288)
Q Consensus 238 ~~C~iC~~----~~~~vlLlPCrHlclC~~C~~~l---~~~CPvCr~~i~~~ 282 (288)
..|.+|++ ....++=.||+|. +|-.|...+ ...||.||.+....
T Consensus 250 ~s~p~~~~~~~~~d~~~lP~~~~~~-~~l~~~~t~~~~~~~~~~~rk~~~~~ 300 (327)
T KOG2068|consen 250 PSCPICYEDLDLTDSNFLPCPCGFR-LCLFCHKTISDGDGRCPGCRKPYERN 300 (327)
T ss_pred CCCCCCCCccccccccccccccccc-chhhhhhcccccCCCCCccCCccccC
Confidence 58999998 3455666788999 899998876 78999999776543
No 242
>COG3159 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.45 E-value=1.9e+02 Score=26.92 Aligned_cols=31 Identities=19% Similarity=0.281 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 023064 115 QSRMLISAIQEGVANKLKEKDEEIHRMRKLNWVLQERVKSLF 156 (288)
Q Consensus 115 ~~r~ll~avE~~~~~rLReKe~Eie~a~r~n~eLEErlrql~ 156 (288)
+.+..|+-+|.. +++++.+|.+||+++..+.
T Consensus 35 ~~~~tVSLve~q-----------l~r~R~~~~~Le~~l~~L~ 65 (218)
T COG3159 35 PVAGTVSLVERQ-----------LARLRNRIRELEEELAALM 65 (218)
T ss_pred CCCCeeehHHHH-----------HHHHHHHHHHHHHHHHHHH
Confidence 555666666643 4455556666666665443
No 243
>PRK04023 DNA polymerase II large subunit; Validated
Probab=30.25 E-value=41 Score=37.72 Aligned_cols=50 Identities=24% Similarity=0.519 Sum_probs=36.2
Q ss_pred CccccccccccccceEEeC-CCC----cccCcchhhhc-CCCCccccccccceEEEe
Q 023064 236 GRMLCRRCGEKESSVLLLP-CRH----LCLCTVCGSCL-IGSCPVCNFVVDASLHVN 286 (288)
Q Consensus 236 ~~~~C~iC~~~~~~vlLlP-CrH----lclC~~C~~~l-~~~CPvCr~~i~~~v~V~ 286 (288)
..+.|..|+..- .....| ||. ...|..|.... ...||-|.........+-
T Consensus 625 g~RfCpsCG~~t-~~frCP~CG~~Te~i~fCP~CG~~~~~y~CPKCG~El~~~s~~~ 680 (1121)
T PRK04023 625 GRRKCPSCGKET-FYRRCPFCGTHTEPVYRCPRCGIEVEEDECEKCGREPTPYSKRK 680 (1121)
T ss_pred cCccCCCCCCcC-CcccCCCCCCCCCcceeCccccCcCCCCcCCCCCCCCCccceEE
Confidence 456899999874 445566 875 46799998774 467999998887665543
No 244
>PRK06342 transcription elongation factor regulatory protein; Validated
Probab=30.08 E-value=1.1e+02 Score=26.84 Aligned_cols=23 Identities=17% Similarity=0.215 Sum_probs=12.2
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHH
Q 023064 131 LKEKDEEIHRMRKLNWVLQERVK 153 (288)
Q Consensus 131 LReKe~Eie~a~r~n~eLEErlr 153 (288)
|.|+.++...+.++..+|+.+++
T Consensus 59 lsEak~~~~~~e~rI~~L~~~L~ 81 (160)
T PRK06342 59 VNERRRQMARPLRDLRYLAARRR 81 (160)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHc
Confidence 44444455555555556665553
No 245
>KOG0245 consensus Kinesin-like protein [Cytoskeleton]
Probab=30.01 E-value=64 Score=36.37 Aligned_cols=58 Identities=14% Similarity=0.243 Sum_probs=0.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHH------HHHHHHH-HhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 023064 97 IAQHTEKVILELEEQRKRQSR------MLISAIQ-EGVANKLKEKDEEIHRMRKLNWVLQERVKSLFV 157 (288)
Q Consensus 97 i~~q~Erlr~~L~e~r~r~~r------~ll~avE-~~~~~rLReKe~Eie~a~r~n~eLEErlrql~~ 157 (288)
|+.++.||+..|.....--.- .++...| ..+..||.|+|.+++.+++ .|+|+|++.++
T Consensus 366 LreEv~rLksll~~~~~~~~~~~~~p~~~~~~~~~e~~~~~L~E~Ek~mael~e---tW~EKl~~aEa 430 (1221)
T KOG0245|consen 366 LREEVARLKSLLRAQGLGDIAVEGSPSALLSQPEIEELRERLQETEKIMAELNE---TWEEKLREAEA 430 (1221)
T ss_pred HHHHHHHHHHHHhccccccccccCCcccccccccHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
No 246
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=30.00 E-value=5.5e+02 Score=28.72 Aligned_cols=10 Identities=20% Similarity=0.444 Sum_probs=4.2
Q ss_pred CCCCccCCCC
Q 023064 4 FFPFAEPMPE 13 (288)
Q Consensus 4 ~~~~~~~~~~ 13 (288)
+.++|...|-
T Consensus 264 Gq~lP~tlP~ 273 (1118)
T KOG1029|consen 264 GQPLPKTLPP 273 (1118)
T ss_pred CCCCCCCCCh
Confidence 3344443443
No 247
>PRK14157 heat shock protein GrpE; Provisional
Probab=29.72 E-value=1.7e+02 Score=27.38 Aligned_cols=20 Identities=10% Similarity=-0.102 Sum_probs=13.4
Q ss_pred HHHhHHHHHHHHHHHHHHHH
Q 023064 97 IAQHTEKVILELEEQRKRQS 116 (288)
Q Consensus 97 i~~q~Erlr~~L~e~r~r~~ 116 (288)
+..+.+.+...+.+.+.+..
T Consensus 82 ~~~~l~~le~e~~e~kd~ll 101 (227)
T PRK14157 82 TLTPLGQAKKEAAEYLEALQ 101 (227)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 45567778888887765544
No 248
>PF10198 Ada3: Histone acetyltransferases subunit 3; InterPro: IPR019340 This entry is found in Ada3 and homologous proteins which function as part of histone acetyltransferase complexes []. Ada3 is an essential component of the Ada transcriptional coactivator (alteration/deficiency in activation) complex. It plays a key role in linking histone acetyltransferase-containing complexes to p53 (tumour suppressor protein) thereby regulating p53 acetylation, stability and transcriptional activation following DNA damage [].
Probab=29.39 E-value=3.5e+02 Score=22.91 Aligned_cols=58 Identities=14% Similarity=0.228 Sum_probs=45.7
Q ss_pred HhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHh
Q 023064 125 EGVANKLKEKDEEIHRMRKLNWVLQERVKSLFVENQIWRDLAQTNEATANTLRSNLEQVLAH 186 (288)
Q Consensus 125 ~~~~~rLReKe~Eie~a~r~n~eLEErlrql~~E~qaWq~~A~~nEa~A~~Lra~L~q~l~q 186 (288)
.-|+..||....||-.....|...-.+|..+..|--+||....--+ .+..+++++..+
T Consensus 36 DEI~aeLR~lQ~eLr~~~~~N~~rk~rL~~~~~e~ma~QE~~~~l~----~lD~~V~~aY~K 93 (131)
T PF10198_consen 36 DEISAELRRLQAELREQSAHNNARKKRLLKIAKEEMARQEYKRILD----DLDKQVEQAYKK 93 (131)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 4566778888889999999999999999999999999998875544 466677776554
No 249
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms]
Probab=29.34 E-value=2.4e+02 Score=28.73 Aligned_cols=18 Identities=17% Similarity=0.298 Sum_probs=7.6
Q ss_pred HHHHHHHHHhHHHHHHhc
Q 023064 170 EATANTLRSNLEQVLAHV 187 (288)
Q Consensus 170 Ea~A~~Lra~L~q~l~q~ 187 (288)
|..+-...-...|++.+-
T Consensus 345 e~LslrI~~svrqLL~rL 362 (497)
T COG3851 345 EQLSLRIYDSVRQLLGRL 362 (497)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 333333333444444443
No 250
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=29.20 E-value=3.3e+02 Score=27.23 Aligned_cols=56 Identities=21% Similarity=0.105 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023064 101 TEKVILELEEQRKRQSRMLISAIQEGVANKLKEKDEEIHRMRKLNWVLQERVKSLFVENQI 161 (288)
Q Consensus 101 ~Erlr~~L~e~r~r~~r~ll~avE~~~~~rLReKe~Eie~a~r~n~eLEErlrql~~E~qa 161 (288)
.|-+-+-+.|..++.-.+|=+. .+--+||++|-...+|..+|--....-|..|.|+
T Consensus 132 LE~li~~~~EEn~~lqlqL~~l-----~~e~~Ekeeesq~LnrELaE~layqq~L~~eyQa 187 (401)
T PF06785_consen 132 LEGLIRHLREENQCLQLQLDAL-----QQECGEKEEESQTLNRELAEALAYQQELNDEYQA 187 (401)
T ss_pred HHHHHHHHHHHHHHHHHhHHHH-----HHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3444444444444444444322 2345788887777766555444444455555554
No 251
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=29.09 E-value=4e+02 Score=23.39 Aligned_cols=29 Identities=17% Similarity=0.363 Sum_probs=17.8
Q ss_pred HHHHHHHHhhhHHHHHHHHHhHHHHHHHHH
Q 023064 80 QDIIFRLQQQQSEIDRYIAQHTEKVILELE 109 (288)
Q Consensus 80 ~~l~~~l~~Q~~EiD~~i~~q~Erlr~~L~ 109 (288)
+.++++-+.+..|+. .++..+++|....+
T Consensus 39 e~~~~~n~~~~~e~~-~L~~d~e~L~~q~~ 67 (158)
T PF09744_consen 39 ESLASRNQEHEVELE-LLREDNEQLETQYE 67 (158)
T ss_pred HHHHHhhhhhhhHHH-HHHHHHHHHHHHHH
Confidence 446666667777777 44556666665444
No 252
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=28.84 E-value=6.5e+02 Score=25.82 Aligned_cols=9 Identities=11% Similarity=0.287 Sum_probs=3.5
Q ss_pred hHHHHHHHH
Q 023064 79 DQDIIFRLQ 87 (288)
Q Consensus 79 ~~~l~~~l~ 87 (288)
...+...++
T Consensus 294 ~~~~~~~le 302 (582)
T PF09731_consen 294 REELEQELE 302 (582)
T ss_pred HHHHHHHHH
Confidence 333443333
No 253
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=28.79 E-value=22 Score=25.47 Aligned_cols=10 Identities=30% Similarity=0.870 Sum_probs=5.0
Q ss_pred cccccccccc
Q 023064 237 RMLCRRCGEK 246 (288)
Q Consensus 237 ~~~C~iC~~~ 246 (288)
...|.+|...
T Consensus 34 ~w~CP~C~a~ 43 (50)
T cd00730 34 DWVCPVCGAG 43 (50)
T ss_pred CCCCCCCCCc
Confidence 3455555543
No 254
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=28.70 E-value=9.2e+02 Score=27.53 Aligned_cols=28 Identities=21% Similarity=0.105 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023064 136 EEIHRMRKLNWVLQERVKSLFVENQIWR 163 (288)
Q Consensus 136 ~Eie~a~r~n~eLEErlrql~~E~qaWq 163 (288)
++.+.+..+...|+..++++..|-+.|.
T Consensus 678 ~~~~~~~~~l~~l~~~l~~~~~e~~~~~ 705 (1201)
T PF12128_consen 678 ERKEQIEEQLNELEEELKQLKQELEELL 705 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444443
No 255
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=28.51 E-value=5.7e+02 Score=25.07 Aligned_cols=53 Identities=21% Similarity=0.326 Sum_probs=37.4
Q ss_pred HhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHH
Q 023064 132 KEKD---EEIHRMRKLNWVLQERVKSLFVENQIWRDLAQTNEATANTLRSNLEQVL 184 (288)
Q Consensus 132 ReKe---~Eie~a~r~n~eLEErlrql~~E~qaWq~~A~~nEa~A~~Lra~L~q~l 184 (288)
++++ .+||+++.++.+||.-++.+.-|-+.-...--+-.-.|..|..+|..+|
T Consensus 126 ~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~~L 181 (319)
T PF09789_consen 126 HEREDLVEQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHELNYIL 181 (319)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5565 6789999999999998888776665544443334445667777776666
No 256
>PHA02107 hypothetical protein
Probab=28.17 E-value=1.5e+02 Score=26.85 Aligned_cols=34 Identities=21% Similarity=0.304 Sum_probs=28.5
Q ss_pred HHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 023064 123 IQEGVANKLKEKDEEIHRMRKLNWVLQERVKSLF 156 (288)
Q Consensus 123 vE~~~~~rLReKe~Eie~a~r~n~eLEErlrql~ 156 (288)
+=--.+.||.|-|+||.++..+-+|.|+-++.+.
T Consensus 178 ~~~F~S~Ri~EID~EI~~LQA~RKEiEDN~K~IK 211 (216)
T PHA02107 178 VFHFASVRISEIDEEIKELQARRKEIEDNIKSIK 211 (216)
T ss_pred HhhhhhhhHhHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3345678999999999999999999999887664
No 257
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=28.16 E-value=6.2e+02 Score=25.35 Aligned_cols=19 Identities=26% Similarity=0.457 Sum_probs=10.8
Q ss_pred HHHHHHHHhHHHHHHhcCC
Q 023064 171 ATANTLRSNLEQVLAHVGG 189 (288)
Q Consensus 171 a~A~~Lra~L~q~l~q~~~ 189 (288)
+....+..++.+.+.....
T Consensus 87 ~~~~~~~~~~~~~~~~iPN 105 (425)
T PRK05431 87 AELDELEAELEELLLRIPN 105 (425)
T ss_pred HHHHHHHHHHHHHHHhCCC
Confidence 3334455666676666554
No 258
>PRK14161 heat shock protein GrpE; Provisional
Probab=28.06 E-value=1.9e+02 Score=25.81 Aligned_cols=7 Identities=57% Similarity=0.743 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 023064 137 EIHRMRK 143 (288)
Q Consensus 137 Eie~a~r 143 (288)
|.++.+|
T Consensus 48 efeN~rk 54 (178)
T PRK14161 48 EIDNTRK 54 (178)
T ss_pred HHHHHHH
Confidence 3333333
No 259
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=28.01 E-value=29 Score=30.76 Aligned_cols=23 Identities=22% Similarity=0.199 Sum_probs=17.5
Q ss_pred cchhhhcCCCCccccccccceEEE
Q 023064 262 TVCGSCLIGSCPVCNFVVDASLHV 285 (288)
Q Consensus 262 ~~C~~~l~~~CPvCr~~i~~~v~V 285 (288)
..+... ...||+||..|.+.+.|
T Consensus 74 ~~~~~~-~L~CPLCRG~V~GWtvv 96 (162)
T PF07800_consen 74 ESQEQP-ELACPLCRGEVKGWTVV 96 (162)
T ss_pred cccccc-cccCccccCceeceEEc
Confidence 333334 78999999999998876
No 260
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=27.98 E-value=3e+02 Score=25.96 Aligned_cols=21 Identities=29% Similarity=0.208 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 023064 146 WVLQERVKSLFVENQIWRDLA 166 (288)
Q Consensus 146 ~eLEErlrql~~E~qaWq~~A 166 (288)
.|...|+..|..|+++-+..-
T Consensus 218 ~e~~~r~~~leken~~lr~~v 238 (269)
T KOG3119|consen 218 DEMAHRVAELEKENEALRTQV 238 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455556666667776665553
No 261
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=27.79 E-value=2.3e+02 Score=25.51 Aligned_cols=31 Identities=35% Similarity=0.500 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 023064 140 RMRKLNWVLQERVKSLFVENQIWRDLAQTNEATANTLR 177 (288)
Q Consensus 140 ~a~r~n~eLEErlrql~~E~qaWq~~A~~nEa~A~~Lr 177 (288)
+.+.+|.+|++++.+|- ..|++||++...++
T Consensus 51 ~LR~~~~~L~~~l~~Li-------~~Ar~Ne~~~~~~~ 81 (225)
T PF04340_consen 51 RLRERNRQLEEQLEELI-------ENARENEAIFQRLH 81 (225)
T ss_dssp HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 33344445555554443 34444555444333
No 262
>PRK14148 heat shock protein GrpE; Provisional
Probab=27.67 E-value=2.4e+02 Score=25.67 Aligned_cols=23 Identities=4% Similarity=0.177 Sum_probs=10.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHH
Q 023064 92 EIDRYIAQHTEKVILELEEQRKRQ 115 (288)
Q Consensus 92 EiD~~i~~q~Erlr~~L~e~r~r~ 115 (288)
|++. +....+.|...+++.+.+.
T Consensus 41 e~~~-l~~~l~~l~~e~~elkd~~ 63 (195)
T PRK14148 41 QLER-AKDTIKELEDSCDQFKDEA 63 (195)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHH
Confidence 3444 3344455555555544333
No 263
>PRK14164 heat shock protein GrpE; Provisional
Probab=27.63 E-value=3e+02 Score=25.46 Aligned_cols=17 Identities=18% Similarity=0.192 Sum_probs=10.6
Q ss_pred HhHHHHHHHHHHHHHHH
Q 023064 99 QHTEKVILELEEQRKRQ 115 (288)
Q Consensus 99 ~q~Erlr~~L~e~r~r~ 115 (288)
.+.+.|...++|.+.+.
T Consensus 77 ~~~~~le~el~el~d~l 93 (218)
T PRK14164 77 GEASTVEAQLAERTEDL 93 (218)
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 45666777777765443
No 264
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=27.58 E-value=1e+03 Score=27.68 Aligned_cols=26 Identities=23% Similarity=0.305 Sum_probs=12.5
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHH
Q 023064 131 LKEKDEEIHRMRKLNWVLQERVKSLF 156 (288)
Q Consensus 131 LReKe~Eie~a~r~n~eLEErlrql~ 156 (288)
+++++.+++.......++++.+..+.
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~le 310 (1353)
T TIGR02680 285 LGRARDELETAREEERELDARTEALE 310 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555455555444443
No 265
>PRK14159 heat shock protein GrpE; Provisional
Probab=27.50 E-value=2e+02 Score=25.74 Aligned_cols=19 Identities=11% Similarity=0.149 Sum_probs=8.7
Q ss_pred HHHHHHhHHHHHHHHHHHH
Q 023064 94 DRYIAQHTEKVILELEEQR 112 (288)
Q Consensus 94 D~~i~~q~Erlr~~L~e~r 112 (288)
|.+=-...+.+...+.+.+
T Consensus 25 ~~~~~~~i~~l~~e~~elk 43 (176)
T PRK14159 25 QNIEDVEQNKLQKDYDELK 43 (176)
T ss_pred hcCcHHHHHHHHHHHHHHH
Confidence 3333444445555555443
No 266
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=27.47 E-value=2.7e+02 Score=29.84 Aligned_cols=53 Identities=15% Similarity=0.229 Sum_probs=29.8
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH-HHhhHHHHHHHHHhHHHHH
Q 023064 132 KEKDEEIHRMRKLNWVLQERVKSLFVEN--QIWRDL-AQTNEATANTLRSNLEQVL 184 (288)
Q Consensus 132 ReKe~Eie~a~r~n~eLEErlrql~~E~--qaWq~~-A~~nEa~A~~Lra~L~q~l 184 (288)
++.+.+|+++.+.+.+|+.++.++..+. ..|.+. .+..+.....|+.+|+.--
T Consensus 439 ~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~ 494 (652)
T COG2433 439 SELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKK 494 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666666666666666665443 334332 3334556677777776543
No 267
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=27.41 E-value=1.8e+02 Score=26.95 Aligned_cols=33 Identities=21% Similarity=0.179 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 023064 138 IHRMRKLNWVLQERVKSLFVENQIWRDLAQTNE 170 (288)
Q Consensus 138 ie~a~r~n~eLEErlrql~~E~qaWq~~A~~nE 170 (288)
+.++..+|.+|++.+.++..+.+.-+....+|+
T Consensus 71 ~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~ 103 (276)
T PRK13922 71 LFDLREENEELKKELLELESRLQELEQLEAENA 103 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555554
No 268
>PHA01750 hypothetical protein
Probab=27.32 E-value=2.8e+02 Score=21.40 Aligned_cols=25 Identities=16% Similarity=0.345 Sum_probs=12.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHH
Q 023064 91 SEIDRYIAQHTEKVILELEEQRKRQ 115 (288)
Q Consensus 91 ~EiD~~i~~q~Erlr~~L~e~r~r~ 115 (288)
+-|..+++.+.+.||+.+++-..|+
T Consensus 34 dAvkeIV~~ELdNL~~ei~~~kikq 58 (75)
T PHA01750 34 DAVKEIVNSELDNLKTEIEELKIKQ 58 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3444555555555555555554333
No 269
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=27.30 E-value=6.2e+02 Score=25.06 Aligned_cols=32 Identities=13% Similarity=0.306 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHH
Q 023064 113 KRQSRMLISAIQEGVANKLKEKDEEIHRMRKL 144 (288)
Q Consensus 113 ~r~~r~ll~avE~~~~~rLReKe~Eie~a~r~ 144 (288)
+.+...+...+..++.++|..+...++.+..+
T Consensus 311 ~q~L~~l~~rL~~a~~~~L~~~~~~L~~l~~r 342 (438)
T PRK00286 311 QQRLDRLQQRLQRALERRLRLAKQRLERLSQR 342 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666777777777777777665433
No 270
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=27.19 E-value=5.7e+02 Score=24.60 Aligned_cols=16 Identities=19% Similarity=0.092 Sum_probs=7.1
Q ss_pred ccccccceEEeCCCCc
Q 023064 243 CGEKESSVLLLPCRHL 258 (288)
Q Consensus 243 C~~~~~~vlLlPCrHl 258 (288)
..-.-....|+|+|..
T Consensus 189 l~~~f~~y~l~P~Gs~ 204 (314)
T PF04111_consen 189 LNFKFQRYRLVPMGSF 204 (314)
T ss_dssp CT---SSEEEE--GGG
T ss_pred hCCCcccceeEecCCC
Confidence 3334445778888876
No 271
>PF11740 KfrA_N: Plasmid replication region DNA-binding N-term; InterPro: IPR021104 The KfrA family of protiens are encoded on plasmids, generally in or near gene clusters invloved in stable inheritance functions. These proteins are thought to form an all-helical structure, consisting of an N-terminal helix-turn-helix DNA binding domain and an extended coiled-coil tail. The best-characterised KfrA protein, encoded on the broad host-range Plasmid RK2, is a site-specific DNA-binding protein whose operator overlaps its own promoter. The DNA-binding domain is essential for function, while the coiled-coil domain is probably responsible for formation of multimers, and may provide an example of a bridge to host structures required for plasmid partitioning []. This entry represents the N-terminal DNA-binding domain.
Probab=27.03 E-value=3.2e+02 Score=21.66 Aligned_cols=28 Identities=14% Similarity=-0.016 Sum_probs=11.9
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 023064 131 LKEKDEEIHRMRKLNWVLQERVKSLFVE 158 (288)
Q Consensus 131 LReKe~Eie~a~r~n~eLEErlrql~~E 158 (288)
..+.+.+++.+.....++.+.+..+..|
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~l~~e 117 (120)
T PF11740_consen 90 RAELEQERAAAEAELAEAEAQAEELEAE 117 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444433
No 272
>PRK14158 heat shock protein GrpE; Provisional
Probab=26.94 E-value=2.6e+02 Score=25.40 Aligned_cols=14 Identities=7% Similarity=-0.113 Sum_probs=6.1
Q ss_pred HhHHHHHHHHHHHH
Q 023064 99 QHTEKVILELEEQR 112 (288)
Q Consensus 99 ~q~Erlr~~L~e~r 112 (288)
...+.+...+++.+
T Consensus 47 ~~l~~le~e~~el~ 60 (194)
T PRK14158 47 EALAAKEAEAAANW 60 (194)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444443
No 273
>PHA02562 46 endonuclease subunit; Provisional
Probab=26.84 E-value=6.6e+02 Score=25.24 Aligned_cols=31 Identities=19% Similarity=0.068 Sum_probs=19.8
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023064 129 NKLKEKDEEIHRMRKLNWVLQERVKSLFVEN 159 (288)
Q Consensus 129 ~rLReKe~Eie~a~r~n~eLEErlrql~~E~ 159 (288)
++++..+.||+++.....++++.++++..+-
T Consensus 358 ~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l 388 (562)
T PHA02562 358 DKAKKVKAAIEELQAEFVDNAEELAKLQDEL 388 (562)
T ss_pred HHHHHHHHHHHHHHhhhhchHHHHHHHHHHH
Confidence 4455666677777777777766666655443
No 274
>PF04642 DUF601: Protein of unknown function, DUF601; InterPro: IPR006736 This family consists of several uncharacterised plant proteins which share a conserved region.
Probab=26.80 E-value=3.3e+02 Score=26.19 Aligned_cols=32 Identities=22% Similarity=0.121 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 023064 140 RMRKLNWVLQERVKSLFVENQIWRDLAQTNEA 171 (288)
Q Consensus 140 ~a~r~n~eLEErlrql~~E~qaWq~~A~~nEa 171 (288)
++++....+||+++.+..+-+.-...|+..|.
T Consensus 256 q~raeL~acEEkl~kmeE~Qa~~l~~aR~~er 287 (311)
T PF04642_consen 256 QARAELNACEEKLKKMEEEQAEMLRAARTEER 287 (311)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 34556667788888888888777777777765
No 275
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=26.74 E-value=1.6e+02 Score=23.96 Aligned_cols=34 Identities=18% Similarity=0.138 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 023064 138 IHRMRKLNWVLQERVKSLFVENQIWRDLAQTNEA 171 (288)
Q Consensus 138 ie~a~r~n~eLEErlrql~~E~qaWq~~A~~nEa 171 (288)
+......+.+|+..++++.+|++..+..+..-.+
T Consensus 73 ~~~~~~ei~~L~~el~~L~~E~diLKKa~~~~~~ 106 (121)
T PRK09413 73 LAAAMKQIKELQRLLGKKTMENELLKEAVEYGRA 106 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence 3445555778888889999999988776654443
No 276
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=26.62 E-value=5e+02 Score=23.79 Aligned_cols=26 Identities=19% Similarity=0.208 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023064 137 EIHRMRKLNWVLQERVKSLFVENQIW 162 (288)
Q Consensus 137 Eie~a~r~n~eLEErlrql~~E~qaW 162 (288)
|+..-..|.++||.+...|..||..-
T Consensus 109 eV~~Y~~KL~eLE~kq~~L~rEN~eL 134 (195)
T PF10226_consen 109 EVAQYQQKLKELEDKQEELIRENLEL 134 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 34444444444444444444444333
No 277
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=26.58 E-value=3.6e+02 Score=24.23 Aligned_cols=19 Identities=16% Similarity=0.109 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 023064 140 RMRKLNWVLQERVKSLFVE 158 (288)
Q Consensus 140 ~a~r~n~eLEErlrql~~E 158 (288)
...++..+|++.+....+|
T Consensus 157 e~~~~l~~l~~ei~~~~~e 175 (176)
T PF12999_consen 157 ELEKKLEELEKEIQAAKQE 175 (176)
T ss_pred HHHHHHHHHHHHHHHHhcc
Confidence 3444555666666555544
No 278
>PF08926 DUF1908: Domain of unknown function (DUF1908); InterPro: IPR015022 This domain is found in microtubule-associated serine/threonine-protein kinases. ; GO: 0000287 magnesium ion binding, 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1V9V_A.
Probab=26.33 E-value=2.5e+02 Score=27.08 Aligned_cols=26 Identities=15% Similarity=0.157 Sum_probs=20.3
Q ss_pred ccchHHHHHHHHhhhHHH--HHHHHHhH
Q 023064 76 SLLDQDIIFRLQQQQSEI--DRYIAQHT 101 (288)
Q Consensus 76 s~~~~~l~~~l~~Q~~Ei--D~~i~~q~ 101 (288)
..+.|++...++.|-.|+ |.|-+.+.
T Consensus 154 ~~~aDgv~~FihHQivElARDCL~KS~~ 181 (282)
T PF08926_consen 154 LPLADGVLRFIHHQIVELARDCLQKSRE 181 (282)
T ss_dssp B--S-HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 457899999999999999 98888873
No 279
>PF14645 Chibby: Chibby family
Probab=26.27 E-value=2.5e+02 Score=23.35 Aligned_cols=43 Identities=30% Similarity=0.329 Sum_probs=31.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 023064 134 KDEEIHRMRKLNWVLQERVKSLFVENQIWRDLAQTNEATANTL 176 (288)
Q Consensus 134 Ke~Eie~a~r~n~eLEErlrql~~E~qaWq~~A~~nEa~A~~L 176 (288)
...+..+.+++|.+|+|.-.-|..+++.-.+.--+..+-+..+
T Consensus 69 ~~~~~~~l~~~n~~L~EENN~Lklk~elLlDMLtettae~~l~ 111 (116)
T PF14645_consen 69 DGEENQRLRKENQQLEEENNLLKLKIELLLDMLTETTAEAHLL 111 (116)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457778888888888888888888888887765555444433
No 280
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=26.26 E-value=4.5e+02 Score=27.15 Aligned_cols=51 Identities=22% Similarity=0.241 Sum_probs=30.1
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHH-HHHHHH
Q 023064 96 YIAQHTEKVILELEEQRKRQSRMLISAIQEGVANKLKEKDEEIHRMRKLN-WVLQER 151 (288)
Q Consensus 96 ~i~~q~Erlr~~L~e~r~r~~r~ll~avE~~~~~rLReKe~Eie~a~r~n-~eLEEr 151 (288)
+|+.+.||||.-|..+.+.|...+....++.+ .-++|.++..|+. .|||-|
T Consensus 257 ~l~~EveRlrt~l~~Aqk~~~ek~~qy~~Ee~-----~~reen~rlQrkL~~e~erR 308 (552)
T KOG2129|consen 257 KLQAEVERLRTYLSRAQKSYQEKLMQYRAEEV-----DHREENERLQRKLINELERR 308 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hHHHHHHHHHHHHHHHHHHH
Confidence 56777788888887777777766655554431 1224555554443 344444
No 281
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=26.13 E-value=2.7e+02 Score=21.41 Aligned_cols=56 Identities=16% Similarity=0.251 Sum_probs=28.5
Q ss_pred HhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHH
Q 023064 87 QQQQSEIDRYIAQHTEKVILELEEQRKRQSRMLISAIQEGVANKLKEKDEEIHRMRKLNWVLQE 150 (288)
Q Consensus 87 ~~Q~~EiD~~i~~q~Erlr~~L~e~r~r~~r~ll~avE~~~~~rLReKe~Eie~a~r~n~eLEE 150 (288)
+.-+.|++..|+...++.-..|.=..+--.- +...++.|+|+ .|+.+..+.++||+
T Consensus 23 ~~~~~e~e~~~r~~l~~~l~kldlVtREEFd-----~q~~~L~~~r~---kl~~LEarl~~LE~ 78 (79)
T PF04380_consen 23 QGPREEIEKNIRARLQSALSKLDLVTREEFD-----AQKAVLARTRE---KLEALEARLAALEA 78 (79)
T ss_pred hhhHHHHHHHHHHHHHHHHHHCCCCcHHHHH-----HHHHHHHHHHH---HHHHHHHHHHHHhc
Confidence 5555667777766655543333221111111 12344555565 56666667777775
No 282
>PRK14162 heat shock protein GrpE; Provisional
Probab=25.83 E-value=2.7e+02 Score=25.29 Aligned_cols=24 Identities=4% Similarity=0.183 Sum_probs=13.5
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHH
Q 023064 90 QSEIDRYIAQHTEKVILELEEQRKR 114 (288)
Q Consensus 90 ~~EiD~~i~~q~Erlr~~L~e~r~r 114 (288)
..|++.+ ..+.+.|...+++.+.+
T Consensus 38 ~~e~~~l-~~~l~~l~~e~~elkd~ 61 (194)
T PRK14162 38 QNPVEDL-EKEIADLKAKNKDLEDK 61 (194)
T ss_pred chhHHHH-HHHHHHHHHHHHHHHHH
Confidence 3566554 44556666666665433
No 283
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=25.63 E-value=5e+02 Score=23.43 Aligned_cols=85 Identities=16% Similarity=0.218 Sum_probs=45.1
Q ss_pred HHHHHHHHhhhHHHHHHHHHhHHHHHH------------------------HHHHHHHHHHHHHHHHHHHhHHHHHHhhH
Q 023064 80 QDIIFRLQQQQSEIDRYIAQHTEKVIL------------------------ELEEQRKRQSRMLISAIQEGVANKLKEKD 135 (288)
Q Consensus 80 ~~l~~~l~~Q~~EiD~~i~~q~Erlr~------------------------~L~e~r~r~~r~ll~avE~~~~~rLReKe 135 (288)
+-|+.+|+++-.|.+.+|....-.|.. .|...+.. ..-+..+-.++..-|.+|.
T Consensus 66 q~iveqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~~n--l~~a~~~a~~AQ~el~eK~ 143 (188)
T PF05335_consen 66 QQIVEQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKAAQAN--LANAEQVAEGAQQELAEKT 143 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 557778999999999998776443322 22111100 0001111123344456666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023064 136 EEIHRMRKLNWVLQERVKSLFVENQIWRDLA 166 (288)
Q Consensus 136 ~Eie~a~r~n~eLEErlrql~~E~qaWq~~A 166 (288)
.-|+.+++|...|...|.....+-+.=+.-|
T Consensus 144 qLLeaAk~Rve~L~~QL~~Ar~D~~~tk~aA 174 (188)
T PF05335_consen 144 QLLEAAKRRVEELQRQLQAARADYEKTKKAA 174 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666655555555544444
No 284
>PRK04863 mukB cell division protein MukB; Provisional
Probab=25.61 E-value=1.2e+03 Score=27.73 Aligned_cols=54 Identities=15% Similarity=0.155 Sum_probs=32.9
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHH
Q 023064 129 NKLKEKDEEIHRMRKLNWVLQERVKSLFVENQIWRDLAQTNEATANTLRSNLEQ 182 (288)
Q Consensus 129 ~rLReKe~Eie~a~r~n~eLEErlrql~~E~qaWq~~A~~nEa~A~~Lra~L~q 182 (288)
..+.....+++.+..+..+.++.+..+..+...++......+.....|+.++..
T Consensus 348 ~ei~~l~~~LeELee~Lee~eeeLeeleeeleeleeEleelEeeLeeLqeqLae 401 (1486)
T PRK04863 348 EKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLAD 401 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555566666666666666666666666666666666666666554
No 285
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=25.58 E-value=36 Score=33.63 Aligned_cols=31 Identities=29% Similarity=0.699 Sum_probs=27.2
Q ss_pred CccccccccccccceEEeCCC--CcccCcchhhh
Q 023064 236 GRMLCRRCGEKESSVLLLPCR--HLCLCTVCGSC 267 (288)
Q Consensus 236 ~~~~C~iC~~~~~~vlLlPCr--HlclC~~C~~~ 267 (288)
....|..|-+....|+++||. |. .|..|...
T Consensus 220 ~ni~C~~Ctdv~~~vlvf~Cns~Hv-tC~dCFr~ 252 (446)
T KOG0006|consen 220 RNITCITCTDVRSPVLVFQCNSRHV-TCLDCFRL 252 (446)
T ss_pred ccceeEEecCCccceEEEecCCcee-ehHHhhhh
Confidence 456899999999999999999 87 79999874
No 286
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=25.51 E-value=9.3e+02 Score=26.51 Aligned_cols=87 Identities=24% Similarity=0.311 Sum_probs=71.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 023064 98 AQHTEKVILELEEQRKRQSRMLISAIQEGVANKLKEKDEEIHRMRKLNWVLQERVKSLFVENQIWRDLAQTNEATANTLR 177 (288)
Q Consensus 98 ~~q~Erlr~~L~e~r~r~~r~ll~avE~~~~~rLReKe~Eie~a~r~n~eLEErlrql~~E~qaWq~~A~~nEa~A~~Lr 177 (288)
+.|.+.|+-.|..+. .|.-.|.+-|| +..-+|-+|+..|++....+..+++-...+..|-..-.+...-.+..++.|+
T Consensus 321 r~hi~~lkesl~~ke-~~~~~Lqsdve-~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq 398 (775)
T PF10174_consen 321 RQHIEVLKESLRAKE-QEAEMLQSDVE-ALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQ 398 (775)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777776544 55667777777 4568899999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHh
Q 023064 178 SNLEQVLAH 186 (288)
Q Consensus 178 a~L~q~l~q 186 (288)
..++.+..+
T Consensus 399 ~kie~Lee~ 407 (775)
T PF10174_consen 399 KKIENLEEQ 407 (775)
T ss_pred HHHHHHHHH
Confidence 996555433
No 287
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=25.47 E-value=6.4e+02 Score=24.59 Aligned_cols=67 Identities=28% Similarity=0.465 Sum_probs=43.4
Q ss_pred HHhhhHHHHHHHHHhHHHHH--------------HHHHHHHH--HHHHHHHHHHHHhHHHHHHhhHHHHHH----HHHHH
Q 023064 86 LQQQQSEIDRYIAQHTEKVI--------------LELEEQRK--RQSRMLISAIQEGVANKLKEKDEEIHR----MRKLN 145 (288)
Q Consensus 86 l~~Q~~EiD~~i~~q~Erlr--------------~~L~e~r~--r~~r~ll~avE~~~~~rLReKe~Eie~----a~r~n 145 (288)
|+-..-|||.| +-|.-||| .+|.|+|+ +|.++++..|- ..|-+||.-|++ ++.+|
T Consensus 84 l~dRetEI~eL-ksQL~RMrEDWIEEECHRVEAQLALKEARkEIkQLkQvieTmr----ssL~ekDkGiQKYFvDINiQN 158 (305)
T PF15290_consen 84 LHDRETEIDEL-KSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQVIETMR----SSLAEKDKGIQKYFVDINIQN 158 (305)
T ss_pred HHhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhhchhhhhHHHHHhhhhhhH
Confidence 44445566653 44544544 46777775 45555555544 457788888886 78889
Q ss_pred HHHHHHHHHHHH
Q 023064 146 WVLQERVKSLFV 157 (288)
Q Consensus 146 ~eLEErlrql~~ 157 (288)
..||-.+..+++
T Consensus 159 ~KLEsLLqsMEl 170 (305)
T PF15290_consen 159 KKLESLLQSMEL 170 (305)
T ss_pred hHHHHHHHHHHH
Confidence 999988877653
No 288
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=25.47 E-value=5.5e+02 Score=23.82 Aligned_cols=51 Identities=12% Similarity=0.102 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHh
Q 023064 136 EEIHRMRKLNWVLQERVKSLFVENQIWRDLAQTNEATANTLRSNLEQVLAH 186 (288)
Q Consensus 136 ~Eie~a~r~n~eLEErlrql~~E~qaWq~~A~~nEa~A~~Lra~L~q~l~q 186 (288)
.++..+......|++-...-..|...|+..+......-...+..|..++..
T Consensus 82 ~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~ak~~L~~~~~~ 132 (246)
T PF00769_consen 82 QELREAEAEIARLEEESERKEEEAEELQEELEEAREDEEEAKEELLEVMSA 132 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 566666666777777777788888899887655544333333344334433
No 289
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=25.45 E-value=21 Score=26.83 Aligned_cols=13 Identities=31% Similarity=0.861 Sum_probs=8.4
Q ss_pred CCCCccccccccc
Q 023064 269 IGSCPVCNFVVDA 281 (288)
Q Consensus 269 ~~~CPvCr~~i~~ 281 (288)
...||.|+.+|+-
T Consensus 55 ~G~CP~C~~~i~~ 67 (70)
T PF11793_consen 55 FGECPYCSSPISW 67 (70)
T ss_dssp EEE-TTT-SEEEG
T ss_pred ccCCcCCCCeeeE
Confidence 3579999998864
No 290
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.20 E-value=26 Score=30.54 Aligned_cols=17 Identities=29% Similarity=0.913 Sum_probs=9.3
Q ss_pred Ccchhhhc-------CCCCccccc
Q 023064 261 CTVCGSCL-------IGSCPVCNF 277 (288)
Q Consensus 261 C~~C~~~l-------~~~CPvCr~ 277 (288)
|..|..++ ...|-.|+.
T Consensus 92 CARCGGrv~lrsNKv~wvcnlc~k 115 (169)
T KOG3799|consen 92 CARCGGRVSLRSNKVMWVCNLCRK 115 (169)
T ss_pred HHhcCCeeeeccCceEEeccCCcH
Confidence 56665554 345666654
No 291
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=25.07 E-value=31 Score=33.30 Aligned_cols=44 Identities=27% Similarity=0.662 Sum_probs=29.3
Q ss_pred Ccccccccccccc----------ceEEeCCCCcccCcchhhhc-----CCCCcccccccc
Q 023064 236 GRMLCRRCGEKES----------SVLLLPCRHLCLCTVCGSCL-----IGSCPVCNFVVD 280 (288)
Q Consensus 236 ~~~~C~iC~~~~~----------~vlLlPCrHlclC~~C~~~l-----~~~CPvCr~~i~ 280 (288)
++..|.+|..+-- ++.=|.|+|. .=..|-... ..+||.|...+.
T Consensus 223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHv-FHEfCIrGWcivGKkqtCPYCKekVd 281 (328)
T KOG1734|consen 223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHV-FHEFCIRGWCIVGKKQTCPYCKEKVD 281 (328)
T ss_pred CcchhHhhcchheeecchhhhhhhheeeecccc-hHHHhhhhheeecCCCCCchHHHHhh
Confidence 4558999987532 2345889998 333443221 689999988765
No 292
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=24.93 E-value=7.9e+02 Score=25.46 Aligned_cols=28 Identities=18% Similarity=0.080 Sum_probs=14.5
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 023064 131 LKEKDEEIHRMRKLNWVLQERVKSLFVE 158 (288)
Q Consensus 131 LReKe~Eie~a~r~n~eLEErlrql~~E 158 (288)
=|+|.-|+|+..-+...|++-...+..+
T Consensus 292 eReasle~Enlqmr~qqleeentelRs~ 319 (502)
T KOG0982|consen 292 EREASLEKENLQMRDQQLEEENTELRSL 319 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666665555555555544444333
No 293
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=24.92 E-value=9.5e+02 Score=26.42 Aligned_cols=29 Identities=17% Similarity=0.216 Sum_probs=16.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 023064 91 SEIDRYIAQHTEKVILELEEQRKRQSRML 119 (288)
Q Consensus 91 ~EiD~~i~~q~Erlr~~L~e~r~r~~r~l 119 (288)
..+|--|+.=+.|||..=+|+=++-.-++
T Consensus 48 ~hld~aLkec~~qlr~~ree~eq~i~~~~ 76 (769)
T PF05911_consen 48 SHLDGALKECMRQLRQVREEQEQKIHEAV 76 (769)
T ss_pred hhhhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 45566666666666666666554433333
No 294
>PRK01885 greB transcription elongation factor GreB; Reviewed
Probab=24.91 E-value=2.6e+02 Score=24.22 Aligned_cols=12 Identities=25% Similarity=0.166 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 023064 141 MRKLNWVLQERV 152 (288)
Q Consensus 141 a~r~n~eLEErl 152 (288)
++.+-+.+|.|+
T Consensus 52 Ak~~~~~~e~rI 63 (157)
T PRK01885 52 GKKRLREIDRRV 63 (157)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 295
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=24.88 E-value=5.1e+02 Score=29.60 Aligned_cols=63 Identities=19% Similarity=0.220 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHhHHHH----HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 023064 113 KRQSRMLISAIQEGVANK----LKEKDEEIHRMRKLNWVLQERVKSLFVENQIWRDLAQTNEATANTL 176 (288)
Q Consensus 113 ~r~~r~ll~avE~~~~~r----LReKe~Eie~a~r~n~eLEErlrql~~E~qaWq~~A~~nEa~A~~L 176 (288)
..|...-++-+|..+ ++ |.||-+-+-+++.....|+..+..+.+|.+.|+..|....+-+.-|
T Consensus 172 ~~hL~velAdle~ki-r~LrqElEEK~enll~lr~eLddleae~~klrqe~~e~l~ea~ra~~yrdel 238 (1195)
T KOG4643|consen 172 NLHLEVELADLEKKI-RTLRQELEEKFENLLRLRNELDDLEAEISKLRQEIEEFLDEAHRADRYRDEL 238 (1195)
T ss_pred hHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 446666666666554 33 4455556666777777888899999999999999997766654433
No 296
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=24.71 E-value=26 Score=24.74 Aligned_cols=10 Identities=40% Similarity=1.145 Sum_probs=4.3
Q ss_pred CCcccccccc
Q 023064 271 SCPVCNFVVD 280 (288)
Q Consensus 271 ~CPvCr~~i~ 280 (288)
.||+|..+++
T Consensus 22 ~CPlC~r~l~ 31 (54)
T PF04423_consen 22 CCPLCGRPLD 31 (54)
T ss_dssp E-TTT--EE-
T ss_pred cCCCCCCCCC
Confidence 6777777654
No 297
>PRK14127 cell division protein GpsB; Provisional
Probab=24.67 E-value=1.8e+02 Score=24.16 Aligned_cols=10 Identities=20% Similarity=0.704 Sum_probs=6.9
Q ss_pred HHHHHHHHHh
Q 023064 91 SEIDRYIAQH 100 (288)
Q Consensus 91 ~EiD~~i~~q 100 (288)
.|+|.||..=
T Consensus 26 ~EVD~FLd~V 35 (109)
T PRK14127 26 DEVDKFLDDV 35 (109)
T ss_pred HHHHHHHHHH
Confidence 5788887643
No 298
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=24.64 E-value=8.7e+02 Score=25.88 Aligned_cols=34 Identities=15% Similarity=0.157 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 023064 145 NWVLQERVKSLFVENQIWRDLAQTNEATANTLRS 178 (288)
Q Consensus 145 n~eLEErlrql~~E~qaWq~~A~~nEa~A~~Lra 178 (288)
+.||.+++-++..+-..|+..-.....-+.+|..
T Consensus 197 ~keL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~ 230 (617)
T PF15070_consen 197 KKELQKKLGELQEKLHNLKEKLELKSQEAQSLQE 230 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 3466666667777777777665555444444443
No 299
>PF11505 DUF3216: Protein of unknown function (DUF3216); InterPro: IPR023108 This domain is found in a family of proteins with unknown function and appears to be restricted to the Thermococcaceae. ; PDB: 2HJM_A.
Probab=24.57 E-value=3.5e+02 Score=22.05 Aligned_cols=57 Identities=25% Similarity=0.353 Sum_probs=32.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHH--HHHHHHHHhHHHHHHhhHH------HHHHHHHHHHHHHHHHH
Q 023064 91 SEIDRYIAQHTEKVILELEEQRKRQSR--MLISAIQEGVANKLKEKDE------EIHRMRKLNWVLQERVK 153 (288)
Q Consensus 91 ~EiD~~i~~q~Erlr~~L~e~r~r~~r--~ll~avE~~~~~rLReKe~------Eie~a~r~n~eLEErlr 153 (288)
.-||+||.++ .+|+-+|-.|.. +++.-+| ++.--|+.|-. =+++.+++-.|||+.+|
T Consensus 21 ~~IDsFv~Ln-----~glEskrGe~Fi~vsIlGFlE-GiLttLk~K~~deri~~Lle~Vr~~R~ele~~fR 85 (97)
T PF11505_consen 21 EAIDSFVALN-----EGLESKRGEEFIKVSILGFLE-GILTTLKLKYEDERIGELLEKVRARREELEELFR 85 (97)
T ss_dssp HHHHHHHHHT-----TTHHHHH-HHHHHHHHHHHHH-HHHHHHTTT---HHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHh-----hhhhhhchHHHHHHHHHHHHH-HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhc
Confidence 3599999877 567888877753 5666666 56667777751 13344444455555444
No 300
>TIGR01461 greB transcription elongation factor GreB. The GreA and GreB transcription elongation factors enable to continuation of RNA transcription past template-encoded arresting sites. Among the Proteobacteria, distinct clades of GreA and GreB are found. GreB differs functionally in that it releases larger oligonucleotides. This model describes proteobacterial GreB.
Probab=24.40 E-value=2.5e+02 Score=24.30 Aligned_cols=20 Identities=20% Similarity=0.189 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 023064 136 EEIHRMRKLNWVLQERVKSL 155 (288)
Q Consensus 136 ~Eie~a~r~n~eLEErlrql 155 (288)
+|-..++.+-+.+|.|++.|
T Consensus 45 aeY~aak~~~~~le~rI~~L 64 (156)
T TIGR01461 45 ADYQYGKKRLREIDRRVRFL 64 (156)
T ss_pred hhhHHHHHHHHHHHHHHHHH
Confidence 34444555555555555443
No 301
>PRK14154 heat shock protein GrpE; Provisional
Probab=24.31 E-value=2.5e+02 Score=25.83 Aligned_cols=22 Identities=5% Similarity=0.217 Sum_probs=10.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHH
Q 023064 93 IDRYIAQHTEKVILELEEQRKRQ 115 (288)
Q Consensus 93 iD~~i~~q~Erlr~~L~e~r~r~ 115 (288)
|+. +..+.+.+...+++...+.
T Consensus 54 ~~~-l~~el~~le~e~~elkd~~ 75 (208)
T PRK14154 54 REK-LEGQLTRMERKVDEYKTQY 75 (208)
T ss_pred hhh-HHHHHHHHHHHHHHHHHHH
Confidence 444 3344455555555554333
No 302
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=24.29 E-value=5.4e+02 Score=25.71 Aligned_cols=21 Identities=24% Similarity=0.427 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 023064 136 EEIHRMRKLNWVLQERVKSLF 156 (288)
Q Consensus 136 ~Eie~a~r~n~eLEErlrql~ 156 (288)
+.+.++.....+|.+.++++.
T Consensus 375 ~~~~~l~~~~~~l~~~~~~l~ 395 (451)
T PF03961_consen 375 EQLKKLKEKKKELKEELKELK 395 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443
No 303
>PRK14151 heat shock protein GrpE; Provisional
Probab=24.13 E-value=2.8e+02 Score=24.70 Aligned_cols=28 Identities=7% Similarity=-0.021 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023064 138 IHRMRKLNWVLQERVKSLFVENQIWRDL 165 (288)
Q Consensus 138 ie~a~r~n~eLEErlrql~~E~qaWq~~ 165 (288)
|+.+..+..+|.+++.++.+|.+..+++
T Consensus 29 i~~le~e~~el~d~~lR~~Ae~eN~rkR 56 (176)
T PRK14151 29 VQELEEQLAAAKDQSLRAAADLQNVRRR 56 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444333
No 304
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=24.10 E-value=4.2e+02 Score=28.03 Aligned_cols=15 Identities=27% Similarity=0.328 Sum_probs=9.1
Q ss_pred CCCCccCCCCccccc
Q 023064 4 FFPFAEPMPEQTMLP 18 (288)
Q Consensus 4 ~~~~~~~~~~~~~~~ 18 (288)
++|++.|.|+.+.+|
T Consensus 2 ~~pl~ep~p~s~~~~ 16 (591)
T KOG2412|consen 2 GIPLEEPCPKSVDGI 16 (591)
T ss_pred CCCCCCCCCCCcccc
Confidence 456777766655443
No 305
>COG5481 Uncharacterized conserved small protein containing a coiled-coil domain [Function unknown]
Probab=24.07 E-value=3.2e+02 Score=20.66 Aligned_cols=48 Identities=25% Similarity=0.396 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHH--HHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 023064 104 VILELEEQRKRQS--RMLISAIQEGVANKLKEKDEEIHRMRKLNWVLQERVKSLF 156 (288)
Q Consensus 104 lr~~L~e~r~r~~--r~ll~avE~~~~~rLReKe~Eie~a~r~n~eLEErlrql~ 156 (288)
+|..|...|+-|. -+-+.|++..--.-| .|+|++|+.-.|.+++.+++
T Consensus 9 irl~~arLrqeH~D~DaaInAmi~~~cD~L-----~iqRmKkKKLAlKDki~~lE 58 (67)
T COG5481 9 IRLTLARLRQEHADFDAAINAMIATGCDAL-----RIQRMKKKKLALKDKITKLE 58 (67)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhCCcHH-----HHHHHHHHHHhHHHHHHHHH
Confidence 5666666666664 233444443322223 46777777777777776553
No 306
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=23.84 E-value=3.6e+02 Score=21.17 Aligned_cols=13 Identities=23% Similarity=0.501 Sum_probs=8.6
Q ss_pred HHHHHHHHHhHHH
Q 023064 91 SEIDRYIAQHTEK 103 (288)
Q Consensus 91 ~EiD~~i~~q~Er 103 (288)
..+|.++.+..++
T Consensus 26 ~~vd~i~~ld~~~ 38 (108)
T PF02403_consen 26 EDVDEIIELDQER 38 (108)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHH
Confidence 5777887766443
No 307
>PRK14153 heat shock protein GrpE; Provisional
Probab=23.50 E-value=3.1e+02 Score=24.91 Aligned_cols=19 Identities=26% Similarity=0.282 Sum_probs=10.1
Q ss_pred HHHhHHHHHHHHHHHHHHH
Q 023064 97 IAQHTEKVILELEEQRKRQ 115 (288)
Q Consensus 97 i~~q~Erlr~~L~e~r~r~ 115 (288)
+....+.+...+++.+.+.
T Consensus 38 ~~~ei~~l~~e~~elkd~~ 56 (194)
T PRK14153 38 ADSETEKCREEIESLKEQL 56 (194)
T ss_pred chHHHHHHHHHHHHHHHHH
Confidence 3445556666666555444
No 308
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=23.27 E-value=1.8e+02 Score=30.03 Aligned_cols=37 Identities=24% Similarity=0.313 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHH
Q 023064 147 VLQERVKSLFVENQIWRDLAQTNEATANTLRSNLEQV 183 (288)
Q Consensus 147 eLEErlrql~~E~qaWq~~A~~nEa~A~~Lra~L~q~ 183 (288)
-||.|+---.+|||.-|..-.+-|.-=.+|-++|.++
T Consensus 276 ~LE~rv~~~taeNqeL~kkV~~Le~~N~sLl~qL~kl 312 (472)
T KOG0709|consen 276 GLESRVSAFTAENQELQKKVEELELSNRSLLAQLKKL 312 (472)
T ss_pred HHhhhhhhcccCcHHHHHHHHHHhhccHHHHHHHHHH
Confidence 4666666666677766666655555444555555543
No 309
>PRK10698 phage shock protein PspA; Provisional
Probab=23.24 E-value=5.8e+02 Score=23.29 Aligned_cols=82 Identities=13% Similarity=0.229 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhH--HHHHHHHHHHHHHHHHHHH
Q 023064 80 QDIIFRLQQQQSEIDRYI---AQHTEKVILELEEQRKRQSRMLISAIQEGVANKLKEKD--EEIHRMRKLNWVLQERVKS 154 (288)
Q Consensus 80 ~~l~~~l~~Q~~EiD~~i---~~q~Erlr~~L~e~r~r~~r~ll~avE~~~~~rLReKe--~Eie~a~r~n~eLEErlrq 154 (288)
...+..|+.|....+..+ +.+..+|+.-|++.+.++..-+...--..+..++++.- .....+-.+--.+|++|.+
T Consensus 98 ~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~~~~~~~~~~~~a~~~f~rmE~ki~~ 177 (222)
T PRK10698 98 TDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSRDVRRQLDSGKLDEAMARFESFERRIDQ 177 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHH
Q ss_pred HHHHHHH
Q 023064 155 LFVENQI 161 (288)
Q Consensus 155 l~~E~qa 161 (288)
+.++.++
T Consensus 178 ~Ea~aea 184 (222)
T PRK10698 178 MEAEAES 184 (222)
T ss_pred HHHHHhH
No 310
>PRK14147 heat shock protein GrpE; Provisional
Probab=23.06 E-value=2.9e+02 Score=24.49 Aligned_cols=27 Identities=15% Similarity=0.164 Sum_probs=15.6
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 023064 89 QQSEIDRYIAQHTEKVILELEEQRKRQS 116 (288)
Q Consensus 89 Q~~EiD~~i~~q~Erlr~~L~e~r~r~~ 116 (288)
...+.+. +..+.+.|+..+.+...+..
T Consensus 16 ~~~~~~~-l~~~l~~l~~e~~elkd~~l 42 (172)
T PRK14147 16 NPPETDP-LKAEVESLRSEIALVKADAL 42 (172)
T ss_pred CCccchh-HHHHHHHHHHHHHHHHHHHH
Confidence 3445555 44556777777776654443
No 311
>PF14169 YdjO: Cold-inducible protein YdjO
Probab=23.05 E-value=46 Score=24.85 Aligned_cols=17 Identities=18% Similarity=0.479 Sum_probs=13.1
Q ss_pred CCCCccccccccceEEE
Q 023064 269 IGSCPVCNFVVDASLHV 285 (288)
Q Consensus 269 ~~~CPvCr~~i~~~v~V 285 (288)
...||+|.++....++.
T Consensus 39 ~p~CPlC~s~M~~~~r~ 55 (59)
T PF14169_consen 39 EPVCPLCKSPMVSGTRM 55 (59)
T ss_pred CccCCCcCCccccceee
Confidence 57888888888777665
No 312
>PF06303 MatP: Organiser of macrodomain of Terminus of chromosome; InterPro: IPR009390 Many bacteria have circular genomes that are large in comparison to their cellular dimensions; this imposes the necessity for compaction of the chromosome during cellular growth, replication, transcription, and segregation. Compaction of chromosomes results in the formation of structures called nucleoids. Nucleoids can be generated by a number of different processes: they include unrestrained DNA supercoiling, formation of a chromatin-like structure through the interaction of DNA binding proteins, condensation by structural maintenance of chromosomes (SMC)-like proteins, and macromolecular crowding []. Chromosome replication and segregation are intimately linked and tightly controlled to ensure that daughter cells each receive a complete copy of the genome. Chromosomes have replication origin (Ori) and termination (Ter) regions that are diametrically opposed. During the process of chromosome replication and cell division the Ori and Ter regions form two macrodomains (MDs), the Ori MD is centred on migS, a 25 bp sequence, that acts as the cis-acting site for the bipolar positioning of oriC []. The Ter MD is centred on dif (deletion-induced filamentation), which is a resolvase site that reduces chromosome multimers to monomers []. The Ori and Ter MDs are insulated from one and other by non-structural regions and other nucleoids. Chromosome replication initiates bidirectionally from oriC. Within the Ori MD with sister chromatids being located in separate cell halves and with the Ter macrodomain anchored to the cell pole. Cell division occurs with the completion of replication of the Ter region and the subsequent separation of the two sister chromatids [, ]. This entry contains MatP (YcbG), which is a component of the MatP/MatS site-specific system that organises the Ter macrodomain (MD) in Escherichia coli (strain K12) and related enterobacteria during replication of the chromosome. In E. coli there are 23 matS sequences, located in the Ter region which is centred on dif. The matS consensus is a palindromic sequence 5'-GTGAC[AG][CT]GTCAC, which is the recognition sequence for MatP. MatP binds to the matS sequences; and is critical for Ter MD formation. Inactivation of matP causes severe defects in chromosome segregation and cell division revealing its role as a major organiser of the Ter MD [].
Probab=23.04 E-value=1.5e+02 Score=26.09 Aligned_cols=33 Identities=21% Similarity=0.487 Sum_probs=24.7
Q ss_pred HHHHhhhHHHHHHHHHh-----HHHHHHHHHHHHHHHH
Q 023064 84 FRLQQQQSEIDRYIAQH-----TEKVILELEEQRKRQS 116 (288)
Q Consensus 84 ~~l~~Q~~EiD~~i~~q-----~Erlr~~L~e~r~r~~ 116 (288)
..++.+-.+|+..|..| .-+|+.+|.-+|+||.
T Consensus 45 ~~le~~P~~v~~WI~~~m~~~l~nklkQaIRArRkR~f 82 (148)
T PF06303_consen 45 LKLENEPVKVNEWIKKHMNPELWNKLKQAIRARRKRHF 82 (148)
T ss_pred HHhhcChHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhc
Confidence 34566667888777765 5688888888888885
No 313
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.91 E-value=9.5e+02 Score=25.68 Aligned_cols=94 Identities=26% Similarity=0.350 Sum_probs=0.0
Q ss_pred hHHHHHH------HHHhHHHHHHHHHHHH------HHHHHHHHHHHHHhHHHH------HHhhHHHHHHH----------
Q 023064 90 QSEIDRY------IAQHTEKVILELEEQR------KRQSRMLISAIQEGVANK------LKEKDEEIHRM---------- 141 (288)
Q Consensus 90 ~~EiD~~------i~~q~Erlr~~L~e~r------~r~~r~ll~avE~~~~~r------LReKe~Eie~a---------- 141 (288)
..|||.| |+.+...|+..+.|+- +-|+.+|-++.+..-.+- |-+|.+|+-++
T Consensus 330 ~EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~qLkkAh~~ 409 (654)
T KOG4809|consen 330 LEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQLKKAHNI 409 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHH
Q 023064 142 ---RKLNWVLQERVKSLFVENQIWRDLAQTNEATANTLRSNLEQV 183 (288)
Q Consensus 142 ---~r~n~eLEErlrql~~E~qaWq~~A~~nEa~A~~Lra~L~q~ 183 (288)
.+-+.+.-+++++|..|.--..+...-..+.+.-|=.-|.++
T Consensus 410 ~ddar~~pe~~d~i~~le~e~~~y~de~~kaqaevdrlLeilkev 454 (654)
T KOG4809|consen 410 EDDARMNPEFADQIKQLEKEASYYRDECGKAQAEVDRLLEILKEV 454 (654)
T ss_pred hHhhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 314
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=22.73 E-value=26 Score=37.45 Aligned_cols=38 Identities=32% Similarity=0.690 Sum_probs=27.9
Q ss_pred cccccccc----cccceEEeCCCCcccCcchhhhc-CCCCccccc
Q 023064 238 MLCRRCGE----KESSVLLLPCRHLCLCTVCGSCL-IGSCPVCNF 277 (288)
Q Consensus 238 ~~C~iC~~----~~~~vlLlPCrHlclC~~C~~~l-~~~CPvCr~ 277 (288)
..|.||.. ....=+++-|+|. +|..|...+ ...|| |..
T Consensus 12 l~c~ic~n~f~~~~~~Pvsl~cght-ic~~c~~~lyn~scp-~~~ 54 (861)
T KOG3161|consen 12 LLCDICLNLFVVQRLEPVSLQCGHT-ICGHCVQLLYNASCP-TKR 54 (861)
T ss_pred hhchHHHHHHHHHhcCcccccccch-HHHHHHHhHhhccCC-CCc
Confidence 46888843 3344556779999 899999987 78888 543
No 315
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=22.61 E-value=1.7e+02 Score=27.39 Aligned_cols=36 Identities=22% Similarity=0.355 Sum_probs=27.8
Q ss_pred HHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 023064 81 DIIFRLQQQQSEIDRYIAQHTEKVILELEEQRKRQSR 117 (288)
Q Consensus 81 ~l~~~l~~Q~~EiD~~i~~q~Erlr~~L~e~r~r~~r 117 (288)
++..+|+.-+.||++ ||-|+|++...|++..+||-.
T Consensus 58 ~l~~ql~~lq~ev~~-LrG~~E~~~~~l~~~~~rq~~ 93 (263)
T PRK10803 58 QLQQQLSDNQSDIDS-LRGQIQENQYQLNQVVERQKQ 93 (263)
T ss_pred HHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHH
Confidence 577788888888887 478888888888887766643
No 316
>PRK14156 heat shock protein GrpE; Provisional
Probab=22.60 E-value=2.8e+02 Score=24.85 Aligned_cols=29 Identities=10% Similarity=-0.032 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023064 137 EIHRMRKLNWVLQERVKSLFVENQIWRDL 165 (288)
Q Consensus 137 Eie~a~r~n~eLEErlrql~~E~qaWq~~ 165 (288)
+|+.+..+..+|.+++.++.+|-+..+++
T Consensus 35 ~l~~l~~e~~elkd~~lR~~AEfeN~rKR 63 (177)
T PRK14156 35 ELELANERADEFENKYLRAHAEMQNIQRR 63 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445555555555555554444
No 317
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=22.55 E-value=6e+02 Score=23.83 Aligned_cols=61 Identities=28% Similarity=0.406 Sum_probs=35.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHH--HHHHHHHHHHHHHHHHH-----HHHHHHH
Q 023064 94 DRYIAQHTEKVILELEEQRKRQSRMLISAIQEGVANKLKEKDEEIHRM--RKLNWVLQERVKSLFVE-----NQIWRDL 165 (288)
Q Consensus 94 D~~i~~q~Erlr~~L~e~r~r~~r~ll~avE~~~~~rLReKe~Eie~a--~r~n~eLEErlrql~~E-----~qaWq~~ 165 (288)
++-|..+.-+|-+.++.+|+++- -.+. -.|=|+-|+||+.. +++-.||+ +...| ...|+..
T Consensus 156 k~av~~~~mklfae~erkRk~~e---~r~~----~eRkr~re~eIeaeek~Kr~~E~q----KnfEEsRd~Rv~sWrnF 223 (250)
T KOG1150|consen 156 KQAVYKQVMKLFAELERKRKELE---ARAN----EERKRQREEEIEAEEKRKREREWQ----KNFEESRDGRVGSWRNF 223 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHH----HHHHHhHHHHHHHHHHHHHHHHHH----HHHHHhcccccchHHHH
Confidence 45566677777777777665432 1222 24456677788877 44444554 33333 2467765
No 318
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=22.45 E-value=1.8e+02 Score=22.80 Aligned_cols=31 Identities=23% Similarity=0.284 Sum_probs=13.3
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023064 132 KEKDEEIHRMRKLNWVLQERVKSLFVENQIW 162 (288)
Q Consensus 132 ReKe~Eie~a~r~n~eLEErlrql~~E~qaW 162 (288)
++.+++|+.+..+...++.++.-+...-..|
T Consensus 73 ~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~L 103 (104)
T PF13600_consen 73 KELEEELEALEDELAALQDEIQALEAQIAFL 103 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333344444444444444444444443333
No 319
>PF10752 DUF2533: Protein of unknown function (DUF2533) ; InterPro: IPR019688 This entry represents proteins with unknown function, and appear to be restricted to Bacillus spp.
Probab=22.38 E-value=4.1e+02 Score=21.23 Aligned_cols=55 Identities=20% Similarity=0.282 Sum_probs=34.7
Q ss_pred chHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhH---HHHHHHHHHHHHH
Q 023064 78 LDQDIIFRLQQQQSEIDRYIAQHTEKVILELEEQRKRQSRMLISAIQEGVANKLKEKD---EEIHRMRKLNWVL 148 (288)
Q Consensus 78 ~~~~l~~~l~~Q~~EiD~~i~~q~Erlr~~L~e~r~r~~r~ll~avE~~~~~rLReKe---~Eie~a~r~n~eL 148 (288)
+-..|.+|.++|..-|-+|+++..+| . .+||+++..=-+-+- +.|..++++..+|
T Consensus 3 VH~aItaH~~Kq~~~~k~F~~Le~~R---------E-------~aIeeav~~c~~g~pFs~d~IN~vT~~mN~L 60 (84)
T PF10752_consen 3 VHKAITAHSQKQHAIIKQFLQLEQQR---------E-------AAIEEAVSLCKQGEPFSTDKINEVTKEMNEL 60 (84)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---------H-------HHHHHHHHHHHCCCCCcHHHHHHHHHHHHHH
Confidence 34568889999999999999876443 2 345555544333333 4555555555544
No 320
>PLN02436 cellulose synthase A
Probab=22.27 E-value=62 Score=36.50 Aligned_cols=45 Identities=20% Similarity=0.577 Sum_probs=32.0
Q ss_pred Ccccccccccc----ccceEEeCCCC--cccCcchhhhc----CCCCcccccccc
Q 023064 236 GRMLCRRCGEK----ESSVLLLPCRH--LCLCTVCGSCL----IGSCPVCNFVVD 280 (288)
Q Consensus 236 ~~~~C~iC~~~----~~~vlLlPCrH--lclC~~C~~~l----~~~CPvCr~~i~ 280 (288)
+...|.||++. .-.=+|+.|.. +.+|..|..-- ...||.|+....
T Consensus 35 ~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 35 SGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1094)
T ss_pred CCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 34489999985 23337788853 34899997442 789999998765
No 321
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=22.18 E-value=5.2e+02 Score=24.94 Aligned_cols=22 Identities=18% Similarity=0.158 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 023064 137 EIHRMRKLNWVLQERVKSLFVE 158 (288)
Q Consensus 137 Eie~a~r~n~eLEErlrql~~E 158 (288)
+++....+..++++++..+..+
T Consensus 236 ~L~~~~~~l~~l~~~l~~l~~~ 257 (344)
T PF12777_consen 236 QLAEKQAELAELEEKLAALQKE 257 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 322
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=22.16 E-value=7e+02 Score=23.88 Aligned_cols=30 Identities=23% Similarity=0.132 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023064 136 EEIHRMRKLNWVLQERVKSLFVENQIWRDL 165 (288)
Q Consensus 136 ~Eie~a~r~n~eLEErlrql~~E~qaWq~~ 165 (288)
+-.+.+--...+|+|+=+.|..||+.-|.+
T Consensus 90 aRm~eme~~i~dL~een~~L~~en~~Lr~~ 119 (292)
T KOG4005|consen 90 ARMEEMEYEIKDLTEENEILQNENDSLRAI 119 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555668888888888888888776
No 323
>COG3809 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.11 E-value=35 Score=27.13 Aligned_cols=10 Identities=50% Similarity=0.976 Sum_probs=8.1
Q ss_pred CCCCcccccc
Q 023064 269 IGSCPVCNFV 278 (288)
Q Consensus 269 ~~~CPvCr~~ 278 (288)
...||-||.+
T Consensus 21 iD~CPrCrGV 30 (88)
T COG3809 21 IDYCPRCRGV 30 (88)
T ss_pred eeeCCccccE
Confidence 6889999865
No 324
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=22.10 E-value=9.3e+02 Score=25.28 Aligned_cols=23 Identities=4% Similarity=0.040 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 023064 135 DEEIHRMRKLNWVLQERVKSLFV 157 (288)
Q Consensus 135 e~Eie~a~r~n~eLEErlrql~~ 157 (288)
+.+++.+.+...+++..++++..
T Consensus 448 ~~~~~~~~~~i~~~~~~~~~~~~ 470 (650)
T TIGR03185 448 LRQLETLKEAIEALRKTLDEKTK 470 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444455554444433
No 325
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=22.04 E-value=5.4e+02 Score=26.67 Aligned_cols=16 Identities=19% Similarity=0.385 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 023064 137 EIHRMRKLNWVLQERV 152 (288)
Q Consensus 137 Eie~a~r~n~eLEErl 152 (288)
|.++++++......++
T Consensus 88 eN~~L~~r~~~id~~i 103 (472)
T TIGR03752 88 ENERLQKREQSIDQQI 103 (472)
T ss_pred HHHHHHHhhhhHHHHH
Confidence 3334444443344443
No 326
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=21.78 E-value=3.6e+02 Score=24.21 Aligned_cols=19 Identities=16% Similarity=0.188 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 023064 138 IHRMRKLNWVLQERVKSLF 156 (288)
Q Consensus 138 ie~a~r~n~eLEErlrql~ 156 (288)
|-...+.|..+-+++.++.
T Consensus 66 Li~~Ar~Ne~~~~~~~~l~ 84 (225)
T PF04340_consen 66 LIENARENEAIFQRLHRLV 84 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334455555555554443
No 327
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=21.69 E-value=5e+02 Score=22.00 Aligned_cols=24 Identities=13% Similarity=0.194 Sum_probs=19.3
Q ss_pred HHHHHHHHhhhHHHHHHHHHhHHH
Q 023064 80 QDIIFRLQQQQSEIDRYIAQHTEK 103 (288)
Q Consensus 80 ~~l~~~l~~Q~~EiD~~i~~q~Er 103 (288)
.++.+++.+=..|.++|++-...|
T Consensus 23 ~~v~~~l~~LEae~q~L~~kE~~r 46 (126)
T PF09403_consen 23 ASVESELNQLEAEYQQLEQKEEAR 46 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458889999999999998877554
No 328
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=21.67 E-value=3.7e+02 Score=20.50 Aligned_cols=55 Identities=15% Similarity=0.148 Sum_probs=34.9
Q ss_pred HhHHHHHHHHHHHHHHHHHH-HHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 023064 99 QHTEKVILELEEQRKRQSRM-LISAIQEGVANKLKEKDEEIHRMRKLNWVLQERVKSL 155 (288)
Q Consensus 99 ~q~Erlr~~L~e~r~r~~r~-ll~avE~~~~~rLReKe~Eie~a~r~n~eLEErlrql 155 (288)
.+.+++...|.+-..-+... .+..+. ...||..-..++..+..+...+++|+..+
T Consensus 35 ~~i~~~~~~L~~~~~~~~~~~~~~~~~--y~~KL~~ikkrm~~l~~~l~~lk~R~~~L 90 (92)
T PF14712_consen 35 QQIDRLNEKLKELNEVEQINEPFDLDP--YVKKLVNIKKRMSNLHERLQKLKKRADKL 90 (92)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34555666666655522222 333333 56777777778888888888888887765
No 329
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=21.67 E-value=8.2e+02 Score=24.48 Aligned_cols=32 Identities=16% Similarity=0.146 Sum_probs=14.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023064 134 KDEEIHRMRKLNWVLQERVKSLFVENQIWRDL 165 (288)
Q Consensus 134 Ke~Eie~a~r~n~eLEErlrql~~E~qaWq~~ 165 (288)
-++||..-..+..+-+|+|.|-...-+.--++
T Consensus 240 t~EeL~~G~~kL~~~~etLEqq~~~L~~niDI 271 (365)
T KOG2391|consen 240 TEEELNIGKQKLVAMKETLEQQLQSLQKNIDI 271 (365)
T ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 34455555554444444444444443333333
No 330
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=21.60 E-value=4e+02 Score=20.89 Aligned_cols=46 Identities=17% Similarity=0.259 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 023064 112 RKRQSRMLISAIQEGVANKLKEKDEEIHRMRKLNWVLQERVKSLFVE 158 (288)
Q Consensus 112 r~r~~r~ll~avE~~~~~rLReKe~Eie~a~r~n~eLEErlrql~~E 158 (288)
..+|...|-.+++ ....|+.+-.+|.+++...|.-|.+-|..|-..
T Consensus 21 Li~ei~~LQ~sL~-~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~~ 66 (80)
T PF10224_consen 21 LIQEILELQDSLE-ALSDRVEEVKEENEKLESENEYLQQYIGNLMSS 66 (80)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444445554 334666677778888888888888888777443
No 331
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=21.55 E-value=5.3e+02 Score=22.28 Aligned_cols=12 Identities=33% Similarity=1.146 Sum_probs=7.6
Q ss_pred CCcccccccccc
Q 023064 235 GGRMLCRRCGEK 246 (288)
Q Consensus 235 ~~~~~C~iC~~~ 246 (288)
.+...|..|+..
T Consensus 110 ~G~l~C~~Cg~~ 121 (146)
T PF07295_consen 110 PGTLVCENCGHE 121 (146)
T ss_pred CceEecccCCCE
Confidence 345678877654
No 332
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=21.50 E-value=6.1e+02 Score=22.93 Aligned_cols=14 Identities=14% Similarity=0.045 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHH
Q 023064 152 VKSLFVENQIWRDL 165 (288)
Q Consensus 152 lrql~~E~qaWq~~ 165 (288)
+.++..+...++..
T Consensus 121 ~~~~~~~~~~~~~~ 134 (302)
T PF10186_consen 121 LEELQNELEERKQR 134 (302)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333344444443
No 333
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=21.44 E-value=40 Score=20.53 Aligned_cols=19 Identities=32% Similarity=0.885 Sum_probs=10.5
Q ss_pred cCcchhhhc---CCCCcccccc
Q 023064 260 LCTVCGSCL---IGSCPVCNFV 278 (288)
Q Consensus 260 lC~~C~~~l---~~~CPvCr~~ 278 (288)
.|..|...+ ...||.|-.+
T Consensus 4 ~Cp~Cg~~~~~~~~fC~~CG~~ 25 (26)
T PF13248_consen 4 FCPNCGAEIDPDAKFCPNCGAK 25 (26)
T ss_pred CCcccCCcCCcccccChhhCCC
Confidence 355555543 5667766543
No 334
>PRK14145 heat shock protein GrpE; Provisional
Probab=21.38 E-value=3.2e+02 Score=24.89 Aligned_cols=25 Identities=20% Similarity=0.243 Sum_probs=13.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHH
Q 023064 91 SEIDRYIAQHTEKVILELEEQRKRQS 116 (288)
Q Consensus 91 ~EiD~~i~~q~Erlr~~L~e~r~r~~ 116 (288)
.+++. +....+.++..+.+...+..
T Consensus 45 ~e~~~-l~~~l~~le~e~~el~d~~l 69 (196)
T PRK14145 45 DEIEE-LKQKLQQKEVEAQEYLDIAQ 69 (196)
T ss_pred hHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 34554 44556666666666554443
No 335
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=21.28 E-value=5.1e+02 Score=21.97 Aligned_cols=38 Identities=16% Similarity=0.017 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 023064 134 KDEEIHRMRKLNWVLQERVKSLFVENQIWRDLAQTNEA 171 (288)
Q Consensus 134 Ke~Eie~a~r~n~eLEErlrql~~E~qaWq~~A~~nEa 171 (288)
.++||+++..-+..-.+.++++..-+++|...-+..+.
T Consensus 46 Lq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~ 83 (160)
T PF13094_consen 46 LQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEK 83 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33477777666666677777777777777666544443
No 336
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=21.28 E-value=4.9e+02 Score=21.77 Aligned_cols=95 Identities=16% Similarity=0.273 Sum_probs=53.0
Q ss_pred ccchHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 023064 76 SLLDQDIIFRLQQQQSEIDRYIAQHTEKVILELEEQRKRQSRMLISAIQEGVANKLKEKDEEIHRMRKLNWVLQERVKSL 155 (288)
Q Consensus 76 s~~~~~l~~~l~~Q~~EiD~~i~~q~Erlr~~L~e~r~r~~r~ll~avE~~~~~rLReKe~Eie~a~r~n~eLEErlrql 155 (288)
..+-.-+.++|.+-..|+..+ +.+..+| +..|..-...|++..+.. +++.....+..+|+..++.+
T Consensus 15 ~~~ve~L~s~lr~~E~E~~~l-~~el~~l----~~~r~~l~~Eiv~l~~~~---------e~~~~~~~~~~~L~~el~~l 80 (120)
T PF12325_consen 15 VQLVERLQSQLRRLEGELASL-QEELARL----EAERDELREEIVKLMEEN---------EELRALKKEVEELEQELEEL 80 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHH----HHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHH
Confidence 344555778888877887653 4444443 344444445555544432 33344444444445555555
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHhHHHHH
Q 023064 156 FVENQIWRDLAQTNEATANTLRSNLEQVL 184 (288)
Q Consensus 156 ~~E~qaWq~~A~~nEa~A~~Lra~L~q~l 184 (288)
....++--.+--+....+.-|++.++.+.
T Consensus 81 ~~ry~t~LellGEK~E~veEL~~Dv~DlK 109 (120)
T PF12325_consen 81 QQRYQTLLELLGEKSEEVEELRADVQDLK 109 (120)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 55555555555566666777888877654
No 337
>PRK14141 heat shock protein GrpE; Provisional
Probab=21.26 E-value=2.9e+02 Score=25.36 Aligned_cols=19 Identities=21% Similarity=0.130 Sum_probs=9.4
Q ss_pred HHHhHHHHHHHHHHHHHHH
Q 023064 97 IAQHTEKVILELEEQRKRQ 115 (288)
Q Consensus 97 i~~q~Erlr~~L~e~r~r~ 115 (288)
+..+.+.|...+++.+.+.
T Consensus 36 ~~~~i~~le~e~~elkd~~ 54 (209)
T PRK14141 36 EPDPLEALKAENAELKDRM 54 (209)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3444555555555554333
No 338
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=21.25 E-value=1.4e+03 Score=27.11 Aligned_cols=17 Identities=12% Similarity=0.075 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 023064 144 LNWVLQERVKSLFVENQ 160 (288)
Q Consensus 144 ~n~eLEErlrql~~E~q 160 (288)
|...|.++.+.|-.+++
T Consensus 1690 rAe~L~~eA~~Ll~~a~ 1706 (1758)
T KOG0994|consen 1690 RAEQLRTEAEKLLGQAN 1706 (1758)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334444333333333
No 339
>PRK14127 cell division protein GpsB; Provisional
Probab=21.19 E-value=4.2e+02 Score=21.95 Aligned_cols=19 Identities=5% Similarity=0.127 Sum_probs=10.2
Q ss_pred hHHHHHHHHhhhHHHHHHH
Q 023064 79 DQDIIFRLQQQQSEIDRYI 97 (288)
Q Consensus 79 ~~~l~~~l~~Q~~EiD~~i 97 (288)
.+++...|++=-.+++.|+
T Consensus 25 ~~EVD~FLd~V~~dye~l~ 43 (109)
T PRK14127 25 QDEVDKFLDDVIKDYEAFQ 43 (109)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555553
No 340
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=21.17 E-value=5.9e+02 Score=22.65 Aligned_cols=25 Identities=16% Similarity=0.063 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 023064 140 RMRKLNWVLQERVKSLFVENQIWRD 164 (288)
Q Consensus 140 ~a~r~n~eLEErlrql~~E~qaWq~ 164 (288)
.+..++.+|++....|..+-..|+.
T Consensus 124 ~l~~~i~~L~~e~~~L~~~~~~l~~ 148 (189)
T PF10211_consen 124 ELEEEIEELEEEKEELEKQVQELKN 148 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444433
No 341
>COG3416 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.11 E-value=2.8e+02 Score=25.93 Aligned_cols=57 Identities=14% Similarity=0.163 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 023064 102 EKVILELEEQRKRQSRMLISAIQ-------EGVANKLKEKDEEIHRMRKLNWVLQERVKSLFVE 158 (288)
Q Consensus 102 Erlr~~L~e~r~r~~r~ll~avE-------~~~~~rLReKe~Eie~a~r~n~eLEErlrql~~E 158 (288)
.||+.+=+--|.++..+|+.-+= -..+++.=-.|.-|+++..+.+|||.|++.+.++
T Consensus 14 ~rlk~a~~~~rD~~Ae~lI~~~~~~qP~a~Y~laQ~vliqE~ALk~a~~~i~eLe~ri~~lq~~ 77 (233)
T COG3416 14 HRLKKAEANERDPQAEALIAEAVAKQPDAAYYLAQRVLIQEQALKKASTQIKELEKRIAILQAG 77 (233)
T ss_pred HHHhhcccCCCChHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34444444445555555543221 1234454555778889999999999999888765
No 342
>COG2960 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.03 E-value=4.8e+02 Score=21.58 Aligned_cols=16 Identities=31% Similarity=0.424 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 023064 140 RMRKLNWVLQERVKSL 155 (288)
Q Consensus 140 ~a~r~n~eLEErlrql 155 (288)
+.+-++..||.|+..|
T Consensus 70 rtR~kl~~Leari~~L 85 (103)
T COG2960 70 RTREKLAALEARIEEL 85 (103)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444555444433
No 343
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=20.97 E-value=8e+02 Score=24.07 Aligned_cols=103 Identities=22% Similarity=0.217 Sum_probs=56.4
Q ss_pred HHHHHhhhHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHHH--HHHh----HHHHHHhhHHHHHHH--------HHHH
Q 023064 83 IFRLQQQQSEIDRYI---AQHTEKVILELEEQRKRQSRMLISA--IQEG----VANKLKEKDEEIHRM--------RKLN 145 (288)
Q Consensus 83 ~~~l~~Q~~EiD~~i---~~q~Erlr~~L~e~r~r~~r~ll~a--vE~~----~~~rLReKe~Eie~a--------~r~n 145 (288)
...|+++..-+...+ +..+.-|...+...|+-.++.-..+ -|.. ..+||.....|-+.+ -...
T Consensus 29 ~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqEEE~isN~LlKkl~~l~keKe~L~~~~e~EEE~lt 108 (310)
T PF09755_consen 29 IESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQAKAEQEEEFISNTLLKKLQQLKKEKETLALKYEQEEEFLT 108 (310)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566554444333 3444444455555555444333222 1222 344554444333333 2234
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHhhHHHHHHHHHhHHHHHH
Q 023064 146 WVLQERVKSLFVENQI-WRDLAQTNEATANTLRSNLEQVLA 185 (288)
Q Consensus 146 ~eLEErlrql~~E~qa-Wq~~A~~nEa~A~~Lra~L~q~l~ 185 (288)
..|.-++.||..|--. =..+.++.|.+++.|+..++.+-.
T Consensus 109 n~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~ 149 (310)
T PF09755_consen 109 NDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEK 149 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 5677778888777543 345667788999999999988753
No 344
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=20.90 E-value=3.6e+02 Score=27.70 Aligned_cols=32 Identities=19% Similarity=0.144 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 023064 146 WVLQERVKSLFVENQIWRDLAQTNEATANTLR 177 (288)
Q Consensus 146 ~eLEErlrql~~E~qaWq~~A~~nEa~A~~Lr 177 (288)
-|||--||==.+|+..||.+|-+.---|-+|+
T Consensus 353 eeLESIVRiKqAEA~MFQ~kAdEARrEAE~Lq 384 (446)
T PF07227_consen 353 EELESIVRIKQAEAKMFQLKADEARREAEGLQ 384 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555556777777777755544454443
No 345
>PRK14163 heat shock protein GrpE; Provisional
Probab=20.89 E-value=5.9e+02 Score=23.55 Aligned_cols=19 Identities=16% Similarity=0.226 Sum_probs=12.4
Q ss_pred HHHhHHHHHHHHHHHHHHH
Q 023064 97 IAQHTEKVILELEEQRKRQ 115 (288)
Q Consensus 97 i~~q~Erlr~~L~e~r~r~ 115 (288)
+..+.+.|...+++.+.+.
T Consensus 45 l~~~l~~l~~e~~el~d~~ 63 (214)
T PRK14163 45 LTAQLDQVRTALGERTADL 63 (214)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5556777777777765433
No 346
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=20.82 E-value=8.9e+02 Score=24.58 Aligned_cols=9 Identities=22% Similarity=0.475 Sum_probs=3.5
Q ss_pred HHHHHhHHH
Q 023064 174 NTLRSNLEQ 182 (288)
Q Consensus 174 ~~Lra~L~q 182 (288)
..|+.+|..
T Consensus 162 ~~l~~~l~~ 170 (525)
T TIGR02231 162 SELQNELNA 170 (525)
T ss_pred HHHHHHHHh
Confidence 334444433
No 347
>PF08599 Nbs1_C: DNA damage repair protein Nbs1; InterPro: IPR013908 This C-terminal region of the DNA damage repair protein Nbs1 has been identified to be necessary for the binding of Mre11 and Tel1 [].
Probab=20.80 E-value=1e+02 Score=23.44 Aligned_cols=24 Identities=21% Similarity=0.115 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 023064 139 HRMRKLNWVLQERVKSLFVENQIWR 163 (288)
Q Consensus 139 e~a~r~n~eLEErlrql~~E~qaWq 163 (288)
..-.++|.||||.|+|. +|.|.=+
T Consensus 29 ~h~~~knseleeWl~~e-~E~~~q~ 52 (65)
T PF08599_consen 29 AHHAGKNSELEEWLRQE-MEEQRQQ 52 (65)
T ss_pred hccccccccHHHHHHHH-HHHHHHH
Confidence 34467899999999774 4444433
No 348
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=20.65 E-value=6.5e+02 Score=23.64 Aligned_cols=22 Identities=27% Similarity=0.280 Sum_probs=10.4
Q ss_pred ccchHHHHHHHHhhhH--HHHHHH
Q 023064 76 SLLDQDIIFRLQQQQS--EIDRYI 97 (288)
Q Consensus 76 s~~~~~l~~~l~~Q~~--EiD~~i 97 (288)
..+-+|+...|+++.. -+++++
T Consensus 68 ~~~~~~~~~~l~r~i~fq~~qr~~ 91 (233)
T KOG4739|consen 68 PRLIQDLYRKLQRVINFQHKQRNL 91 (233)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHH
Confidence 3334445555555442 444553
No 349
>KOG4466 consensus Component of histone deacetylase complex (breast carcinoma metastasis suppressor 1 protein in human) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=20.38 E-value=8e+02 Score=23.84 Aligned_cols=18 Identities=22% Similarity=0.124 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 023064 144 LNWVLQERVKSLFVENQI 161 (288)
Q Consensus 144 ~n~eLEErlrql~~E~qa 161 (288)
...+|||++++++-|-+.
T Consensus 117 l~seleeKkrkieeeR~s 134 (291)
T KOG4466|consen 117 LISELEEKKRKIEEERLS 134 (291)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 456899999999877654
No 350
>PLN02320 seryl-tRNA synthetase
Probab=20.34 E-value=5.8e+02 Score=26.58 Aligned_cols=20 Identities=15% Similarity=0.135 Sum_probs=11.3
Q ss_pred HHHHHHHHHhHHHHHHhcCC
Q 023064 170 EATANTLRSNLEQVLAHVGG 189 (288)
Q Consensus 170 Ea~A~~Lra~L~q~l~q~~~ 189 (288)
|+....+..+|++.+.....
T Consensus 150 e~~~~~~~~~l~~~~l~iPN 169 (502)
T PLN02320 150 EEDLVKLTDELQLEAQSIPN 169 (502)
T ss_pred HHHHHHHHHHHHHHHHhCCC
Confidence 33344455566776666654
No 351
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=20.08 E-value=1.2e+03 Score=25.60 Aligned_cols=51 Identities=16% Similarity=0.105 Sum_probs=25.4
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHH
Q 023064 131 LKEKDEEIHRMRKLNWVLQERVKSLFVENQIWRDLAQTNEATANTLRSNLE 181 (288)
Q Consensus 131 LReKe~Eie~a~r~n~eLEErlrql~~E~qaWq~~A~~nEa~A~~Lra~L~ 181 (288)
+.+.+.+++.+..+..+++..+..+..+-..++..-...+.....++..++
T Consensus 870 ~~~~~~~~~~l~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~ 920 (1164)
T TIGR02169 870 LEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLS 920 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555555555555555555555555555554444444444444433
Done!