Query 023064
Match_columns 288
No_of_seqs 217 out of 1132
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 15:45:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023064.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023064hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ea5_A Cell growth regulator w 99.4 2.8E-13 9.4E-18 100.5 3.5 51 237-288 15-65 (68)
2 2vje_B MDM4 protein; proto-onc 99.3 3E-13 1E-17 98.5 1.6 52 237-288 7-63 (63)
3 2vje_A E3 ubiquitin-protein li 99.3 5.9E-13 2E-17 97.3 2.8 52 237-288 8-64 (64)
4 2yho_A E3 ubiquitin-protein li 99.3 2.5E-12 8.5E-17 97.8 3.9 51 237-288 18-68 (79)
5 4ic3_A E3 ubiquitin-protein li 99.3 2.9E-12 9.9E-17 95.8 3.9 52 236-288 23-74 (74)
6 2ecg_A Baculoviral IAP repeat- 99.2 2.7E-12 9.3E-17 95.9 1.8 52 236-288 24-75 (75)
7 3t6p_A Baculoviral IAP repeat- 99.0 2.9E-10 1E-14 108.2 4.2 52 236-288 294-345 (345)
8 1chc_A Equine herpes virus-1 r 98.3 2.5E-07 8.7E-12 66.5 3.5 48 238-286 6-57 (68)
9 4ayc_A E3 ubiquitin-protein li 98.3 5.2E-06 1.8E-10 68.2 10.8 44 239-283 55-101 (138)
10 2ecn_A Ring finger protein 141 98.3 1.9E-07 6.6E-12 67.6 1.3 49 236-286 14-65 (70)
11 2d8t_A Dactylidin, ring finger 98.2 7E-07 2.4E-11 65.1 3.3 44 237-281 15-61 (71)
12 2ecm_A Ring finger and CHY zin 98.2 9.3E-07 3.2E-11 60.8 3.5 44 237-281 5-55 (55)
13 2xeu_A Ring finger protein 4; 98.1 8.4E-07 2.9E-11 62.5 2.2 49 238-287 4-64 (64)
14 2ysl_A Tripartite motif-contai 98.1 1.3E-06 4.3E-11 63.5 2.9 45 236-281 19-69 (73)
15 2csy_A Zinc finger protein 183 98.1 2.6E-06 8.9E-11 63.5 4.2 46 237-283 15-63 (81)
16 3ng2_A RNF4, snurf, ring finge 98.0 1.1E-06 3.9E-11 63.3 1.1 44 237-281 10-63 (71)
17 2y1n_A E3 ubiquitin-protein li 98.0 3E-06 1E-10 82.0 4.1 51 236-287 331-385 (389)
18 2kiz_A E3 ubiquitin-protein li 98.0 3.6E-06 1.2E-10 60.7 3.4 45 238-283 15-65 (69)
19 2ea6_A Ring finger protein 4; 98.0 1.8E-06 6E-11 61.7 1.6 44 237-281 15-68 (69)
20 1iym_A EL5; ring-H2 finger, ub 98.0 4.8E-06 1.7E-10 57.3 3.3 42 238-280 6-54 (55)
21 2ect_A Ring finger protein 126 98.0 4.3E-06 1.5E-10 61.6 3.2 45 237-282 15-65 (78)
22 2ct2_A Tripartite motif protei 97.9 4E-06 1.4E-10 62.7 2.7 45 236-281 14-68 (88)
23 1bor_A Transcription factor PM 97.9 3.2E-06 1.1E-10 59.4 1.8 44 237-281 6-49 (56)
24 1x4j_A Ring finger protein 38; 97.9 5.8E-06 2E-10 60.7 2.9 44 237-281 23-72 (75)
25 2djb_A Polycomb group ring fin 97.9 8.7E-06 3E-10 59.4 3.8 46 236-282 14-63 (72)
26 2l0b_A E3 ubiquitin-protein li 97.9 5.7E-06 2E-10 63.4 2.6 46 236-282 39-90 (91)
27 2ecv_A Tripartite motif-contai 97.8 6.9E-06 2.3E-10 60.6 2.6 45 236-281 18-71 (85)
28 2ecy_A TNF receptor-associated 97.8 6.9E-06 2.3E-10 58.9 2.2 45 236-281 14-62 (66)
29 2ep4_A Ring finger protein 24; 97.8 8.8E-06 3E-10 59.4 2.5 46 238-284 16-67 (74)
30 2egp_A Tripartite motif-contai 97.8 7.4E-06 2.5E-10 60.1 1.7 45 236-281 11-65 (79)
31 3fl2_A E3 ubiquitin-protein li 97.8 1E-05 3.4E-10 65.0 2.6 43 238-281 53-99 (124)
32 2ecw_A Tripartite motif-contai 97.8 1.3E-05 4.3E-10 59.2 2.9 44 237-281 19-71 (85)
33 1g25_A CDK-activating kinase a 97.7 9.4E-06 3.2E-10 58.0 1.8 43 238-281 4-55 (65)
34 2yur_A Retinoblastoma-binding 97.7 2E-05 6.7E-10 58.0 3.2 44 236-280 14-63 (74)
35 1jm7_A BRCA1, breast cancer ty 97.7 1.2E-05 4E-10 62.8 2.0 44 237-281 21-70 (112)
36 3l11_A E3 ubiquitin-protein li 97.7 1.4E-05 4.9E-10 63.2 2.1 44 237-281 15-62 (115)
37 3ztg_A E3 ubiquitin-protein li 97.6 2.7E-05 9.2E-10 59.0 3.4 43 236-279 12-60 (92)
38 2y43_A E3 ubiquitin-protein li 97.6 2E-05 7E-10 60.7 2.5 44 237-281 22-69 (99)
39 1e4u_A Transcriptional repress 97.6 1.1E-05 3.7E-10 61.0 0.9 47 237-284 11-65 (78)
40 3lrq_A E3 ubiquitin-protein li 97.6 2.1E-05 7.2E-10 61.2 2.3 45 236-281 21-70 (100)
41 2ckl_A Polycomb group ring fin 97.6 2.8E-05 9.7E-10 60.9 2.8 45 236-281 14-62 (108)
42 1z6u_A NP95-like ring finger p 97.6 2.4E-05 8.1E-10 65.7 2.5 44 238-282 79-126 (150)
43 1t1h_A Gspef-atpub14, armadill 97.5 3.8E-05 1.3E-09 56.5 2.7 45 236-281 7-55 (78)
44 2ckl_B Ubiquitin ligase protei 97.5 3.5E-05 1.2E-09 64.7 2.8 44 236-280 53-101 (165)
45 2ysj_A Tripartite motif-contai 97.5 5E-05 1.7E-09 53.7 2.7 39 236-275 19-63 (63)
46 3hct_A TNF receptor-associated 97.5 5.8E-05 2E-09 60.2 3.0 45 236-281 17-65 (118)
47 1jm7_B BARD1, BRCA1-associated 97.4 5.2E-05 1.8E-09 60.4 2.4 44 236-280 21-66 (117)
48 2ecj_A Tripartite motif-contai 97.4 6E-05 2E-09 52.0 2.4 39 236-275 14-58 (58)
49 4ap4_A E3 ubiquitin ligase RNF 97.4 5.6E-05 1.9E-09 59.9 1.9 45 236-281 6-60 (133)
50 1rmd_A RAG1; V(D)J recombinati 97.3 8.6E-05 2.9E-09 58.7 2.5 44 237-281 23-70 (116)
51 1v87_A Deltex protein 2; ring- 97.3 8.2E-05 2.8E-09 58.5 1.7 42 239-281 27-94 (114)
52 4ap4_A E3 ubiquitin ligase RNF 97.3 0.00012 4.1E-09 58.0 2.6 51 236-287 71-133 (133)
53 2ecl_A Ring-box protein 2; RNF 97.1 0.00018 6E-09 54.0 2.4 41 239-280 28-75 (81)
54 2f42_A STIP1 homology and U-bo 97.1 0.0013 4.3E-08 57.3 8.1 137 89-281 11-153 (179)
55 2kr4_A Ubiquitin conjugation f 96.9 0.0007 2.4E-08 51.4 3.7 45 236-281 13-60 (85)
56 3knv_A TNF receptor-associated 96.8 0.00025 8.5E-09 58.9 0.9 44 235-279 29-76 (141)
57 3hcs_A TNF receptor-associated 96.8 0.0006 2E-08 57.3 3.1 45 236-281 17-65 (170)
58 2c2l_A CHIP, carboxy terminus 96.6 0.00092 3.2E-08 59.1 3.2 45 236-281 207-255 (281)
59 3dpl_R Ring-box protein 1; ubi 96.5 0.001 3.6E-08 52.9 2.6 30 249-279 67-99 (106)
60 2kre_A Ubiquitin conjugation f 96.5 0.0015 5.2E-08 51.2 3.4 46 235-281 27-75 (100)
61 1wgm_A Ubiquitin conjugation f 96.4 0.0021 7.3E-08 50.2 3.7 45 236-281 21-69 (98)
62 4a0k_B E3 ubiquitin-protein li 95.8 0.0016 5.5E-08 53.0 0.0 41 238-279 49-110 (117)
63 2d8s_A Cellular modulator of i 95.7 0.0068 2.3E-07 45.8 3.3 43 238-281 16-70 (80)
64 3vk6_A E3 ubiquitin-protein li 95.2 0.0092 3.1E-07 47.6 2.6 45 239-284 3-52 (101)
65 1wim_A KIAA0161 protein; ring 94.9 0.0063 2.1E-07 46.3 0.8 41 237-278 5-61 (94)
66 2yu4_A E3 SUMO-protein ligase 94.7 0.013 4.4E-07 45.0 2.2 42 236-278 6-59 (94)
67 2v71_A Nuclear distribution pr 94.6 0.91 3.1E-05 39.8 13.8 75 98-184 23-101 (189)
68 3htk_C E3 SUMO-protein ligase 92.5 0.057 2E-06 49.8 2.7 47 233-280 177-231 (267)
69 2oqq_A Transcription factor HY 92.4 0.41 1.4E-05 32.3 6.0 33 134-166 8-40 (42)
70 1vyx_A ORF K3, K3RING; zinc-bi 91.3 0.081 2.8E-06 37.7 1.8 43 238-280 7-58 (60)
71 3oja_B Anopheles plasmodium-re 88.8 14 0.00048 35.8 16.0 65 119-183 506-570 (597)
72 3oja_B Anopheles plasmodium-re 88.7 8.8 0.0003 37.2 14.5 38 150-187 544-581 (597)
73 3iv1_A Tumor susceptibility ge 86.2 3.7 0.00013 31.1 7.9 46 118-163 3-59 (78)
74 4etp_A Kinesin-like protein KA 86.2 2 6.8E-05 41.2 8.0 57 129-185 3-59 (403)
75 2v66_B Nuclear distribution pr 85.6 13 0.00043 29.9 13.7 86 97-187 8-93 (111)
76 2bay_A PRE-mRNA splicing facto 85.2 0.34 1.2E-05 34.4 1.7 43 238-281 4-50 (61)
77 1ci6_A Transcription factor AT 84.9 2.8 9.6E-05 30.1 6.5 35 132-166 26-60 (63)
78 3mq9_A Bone marrow stromal ant 84.5 7.6 0.00026 36.8 11.2 40 90-129 395-440 (471)
79 2ko5_A Ring finger protein Z; 81.3 0.53 1.8E-05 37.2 1.4 50 234-285 25-77 (99)
80 2v66_B Nuclear distribution pr 81.2 4.9 0.00017 32.3 7.1 41 142-182 2-42 (111)
81 3s9g_A Protein hexim1; cyclin 80.4 15 0.00051 29.1 9.4 30 128-164 64-93 (104)
82 1a93_B MAX protein, coiled coi 80.3 2.7 9.1E-05 27.2 4.2 25 132-156 10-34 (34)
83 3oja_A Leucine-rich immune mol 79.3 29 0.00098 32.9 13.2 56 131-186 423-478 (487)
84 3mq7_A Bone marrow stromal ant 78.1 26 0.00089 28.4 13.8 82 79-162 14-104 (121)
85 3a7p_A Autophagy protein 16; c 77.8 29 0.00099 29.3 11.1 30 136-165 103-136 (152)
86 1dip_A Delta-sleep-inducing pe 77.2 1.5 5.2E-05 33.0 2.7 31 136-166 15-45 (78)
87 2wvr_A Geminin; DNA replicatio 75.9 15 0.00053 32.4 9.2 63 100-177 94-156 (209)
88 1t6f_A Geminin; coiled-coil, c 73.1 3 0.0001 27.2 3.0 21 130-150 15-35 (37)
89 3hnw_A Uncharacterized protein 72.6 30 0.001 28.4 9.8 31 129-159 103-133 (138)
90 2jee_A YIIU; FTSZ, septum, coi 71.4 25 0.00085 26.7 8.3 21 145-165 50-70 (81)
91 1jnm_A Proto-oncogene C-JUN; B 70.5 18 0.00062 25.4 7.0 21 145-165 24-44 (62)
92 1wlq_A Geminin; coiled-coil; 2 69.6 31 0.0011 26.3 8.4 58 101-173 18-75 (83)
93 1fmh_A General control protein 68.6 8.4 0.00029 24.0 4.1 27 133-159 5-31 (33)
94 3nmd_A CGMP dependent protein 67.6 13 0.00046 27.6 5.9 33 131-163 35-67 (72)
95 1hjb_A Ccaat/enhancer binding 67.3 39 0.0013 25.8 9.0 29 136-164 43-71 (87)
96 2zxx_A Geminin; coiled-coil, c 66.6 32 0.0011 26.0 7.9 48 102-152 15-64 (79)
97 3na7_A HP0958; flagellar bioge 65.3 72 0.0025 28.1 14.9 52 130-181 91-142 (256)
98 2q6q_A Spindle POLE BODY compo 64.7 39 0.0013 25.0 7.8 29 128-156 9-37 (74)
99 1kd8_A GABH AIV, GCN4 acid bas 64.3 6.9 0.00023 25.5 3.3 28 130-157 2-29 (36)
100 1deq_A Fibrinogen (alpha chain 64.1 93 0.0032 29.9 12.5 69 84-153 77-158 (390)
101 1ez3_A Syntaxin-1A; three heli 63.6 39 0.0013 26.1 8.5 86 98-186 18-110 (127)
102 1uii_A Geminin; human, DNA rep 63.6 47 0.0016 25.3 9.0 47 101-150 26-74 (83)
103 1t3j_A Mitofusin 1; coiled coi 63.1 37 0.0013 26.5 8.0 53 121-184 39-91 (96)
104 1kd8_B GABH BLL, GCN4 acid bas 62.8 9.8 0.00034 24.7 3.8 27 130-156 2-28 (36)
105 3ghg_A Fibrinogen alpha chain; 62.6 26 0.00089 35.1 8.6 28 85-112 75-102 (562)
106 3vkg_A Dynein heavy chain, cyt 62.4 92 0.0032 37.6 14.4 27 135-161 2027-2053(3245)
107 2l5g_B Putative uncharacterize 61.6 20 0.00069 24.1 5.3 31 129-159 9-39 (42)
108 3k1l_B Fancl; UBC, ring, RWD, 60.4 1.5 5.1E-05 42.1 -0.6 46 238-284 309-376 (381)
109 2b5u_A Colicin E3; high resolu 59.8 1.3E+02 0.0043 30.1 12.8 85 98-184 320-415 (551)
110 3mq7_A Bone marrow stromal ant 59.4 52 0.0018 26.7 8.4 52 101-153 55-109 (121)
111 2i1j_A Moesin; FERM, coiled-co 57.4 18 0.00061 36.2 6.6 74 99-181 300-373 (575)
112 3s9g_A Protein hexim1; cyclin 56.9 71 0.0024 25.2 9.1 23 142-164 64-86 (104)
113 1gu4_A CAAT/enhancer binding p 56.0 61 0.0021 24.2 8.0 28 136-163 43-70 (78)
114 4egx_A Kinesin-like protein KI 55.9 34 0.0011 29.2 7.3 29 125-156 8-36 (184)
115 3i00_A HIP-I, huntingtin-inter 55.1 47 0.0016 26.7 7.6 44 142-185 39-82 (120)
116 1gd2_E Transcription factor PA 53.0 64 0.0022 23.6 7.5 14 145-158 52-65 (70)
117 3e98_A GAF domain of unknown f 53.0 35 0.0012 30.4 7.2 33 138-177 74-106 (252)
118 2wt7_A Proto-oncogene protein 52.8 57 0.002 22.9 9.7 35 132-166 26-60 (63)
119 3m91_A Proteasome-associated A 51.8 28 0.00096 24.1 5.0 32 128-159 8-39 (51)
120 3o0z_A RHO-associated protein 49.9 1.2E+02 0.0041 25.8 14.8 94 83-185 8-111 (168)
121 1s94_A S-syntaxin; three helix 49.9 98 0.0034 25.5 9.2 86 98-186 49-141 (180)
122 1t2k_D Cyclic-AMP-dependent tr 49.8 62 0.0021 22.5 9.4 34 132-165 25-58 (61)
123 3vem_A Helicase protein MOM1; 48.9 1E+02 0.0035 24.8 10.4 30 74-103 29-58 (115)
124 2akf_A Coronin-1A; coiled coil 48.1 38 0.0013 21.1 4.5 27 135-161 5-31 (32)
125 3s4r_A Vimentin; alpha-helix, 48.1 89 0.003 23.8 11.1 78 78-164 14-91 (93)
126 3i00_A HIP-I, huntingtin-inter 48.1 1.1E+02 0.0036 24.6 10.7 66 91-162 15-80 (120)
127 2fiy_A Protein FDHE homolog; F 47.8 8.8 0.0003 35.7 2.5 42 238-279 183-232 (309)
128 2ct0_A Non-SMC element 1 homol 47.1 15 0.00053 26.9 3.2 42 239-281 17-64 (74)
129 2jun_A Midline-1; B-BOX, TRIM, 45.1 6.2 0.00021 29.6 0.8 29 238-267 4-35 (101)
130 3nmd_A CGMP dependent protein 44.7 51 0.0017 24.5 5.7 21 132-152 29-49 (72)
131 1x4t_A Hypothetical protein LO 44.7 25 0.00084 27.4 4.1 28 129-156 52-79 (92)
132 3u06_A Protein claret segregat 43.6 77 0.0026 30.3 8.4 53 132-184 6-58 (412)
133 1jnm_A Proto-oncogene C-JUN; B 42.8 38 0.0013 23.7 4.7 36 129-164 22-57 (62)
134 3m48_A General control protein 42.1 34 0.0012 21.8 3.8 25 131-155 2-26 (33)
135 1uo4_A General control protein 40.9 34 0.0012 21.9 3.6 27 130-156 2-28 (34)
136 3pwf_A Rubrerythrin; non heme 40.3 10 0.00035 32.0 1.5 17 269-285 153-169 (170)
137 3c3g_A Alpha/beta peptide with 40.3 39 0.0013 21.5 3.8 25 131-155 2-26 (33)
138 2wq1_A General control protein 40.2 39 0.0013 21.5 3.8 26 130-155 1-26 (33)
139 2v71_A Nuclear distribution pr 39.2 1.9E+02 0.0065 25.0 16.7 58 131-188 90-147 (189)
140 1lwu_B Fibrinogen beta chain; 39.2 39 0.0013 31.5 5.4 32 124-155 23-54 (323)
141 3vkg_A Dynein heavy chain, cyt 39.1 4.2E+02 0.014 32.2 14.9 33 132-164 2017-2049(3245)
142 2hy6_A General control protein 39.0 38 0.0013 21.7 3.6 27 130-156 2-28 (34)
143 1hjb_A Ccaat/enhancer binding 38.2 92 0.0032 23.7 6.5 37 141-177 34-70 (87)
144 2dfs_A Myosin-5A; myosin-V, in 37.9 1.9E+02 0.0063 31.2 11.0 101 85-186 925-1027(1080)
145 2dgc_A Protein (GCN4); basic d 37.2 1.1E+02 0.0037 21.7 6.4 20 143-162 30-49 (63)
146 2oxj_A Hybrid alpha/beta pepti 36.3 53 0.0018 21.0 4.0 24 132-155 4-27 (34)
147 3lay_A Zinc resistance-associa 34.0 1.2E+02 0.0042 25.7 7.3 11 88-98 71-81 (175)
148 2p4v_A Transcription elongatio 33.7 1E+02 0.0036 25.4 6.7 19 137-155 47-65 (158)
149 1deq_A Fibrinogen (alpha chain 33.7 1.8E+02 0.0063 27.9 9.1 42 79-120 41-88 (390)
150 2r2v_A GCN4 leucine zipper; co 33.2 58 0.002 20.8 3.8 26 130-155 2-27 (34)
151 3c3f_A Alpha/beta peptide with 33.0 59 0.002 20.8 3.8 26 130-155 2-27 (34)
152 2dgc_A Protein (GCN4); basic d 32.3 93 0.0032 22.0 5.3 28 130-157 31-58 (63)
153 1ci6_A Transcription factor AT 31.9 1.3E+02 0.0045 21.1 7.8 47 126-178 12-58 (63)
154 3ghg_C Fibrinogen gamma chain; 31.7 3.6E+02 0.012 26.0 12.5 105 79-185 22-133 (411)
155 1i84_S Smooth muscle myosin he 31.6 1.3E+02 0.0046 32.3 8.7 26 132-157 909-934 (1184)
156 2bni_A General control protein 31.6 59 0.002 20.8 3.6 26 130-155 2-27 (34)
157 1lko_A Rubrerythrin all-iron(I 31.5 15 0.0005 31.4 1.1 16 269-284 171-186 (191)
158 4ani_A Protein GRPE; chaperone 31.4 1.2E+02 0.004 26.7 6.9 39 76-115 41-82 (213)
159 1gu4_A CAAT/enhancer binding p 31.1 95 0.0032 23.1 5.4 34 141-174 34-67 (78)
160 2f23_A Anti-cleavage anti-GREA 30.7 92 0.0032 25.5 5.9 19 137-155 47-65 (156)
161 2yy0_A C-MYC-binding protein; 30.2 1E+02 0.0035 21.2 5.1 26 136-161 19-44 (53)
162 1yuz_A Nigerythrin; rubrythrin 29.7 17 0.00057 31.5 1.1 16 269-284 186-201 (202)
163 3ghg_A Fibrinogen alpha chain; 29.7 4.4E+02 0.015 26.4 13.7 78 79-161 48-128 (562)
164 1yk4_A Rubredoxin, RD; electro 29.0 25 0.00084 24.3 1.7 14 271-284 37-50 (52)
165 2wt7_A Proto-oncogene protein 28.8 1.5E+02 0.0051 20.7 7.2 31 143-173 23-53 (63)
166 1joc_A EEA1, early endosomal a 28.7 2.2E+02 0.0074 22.5 9.5 25 130-154 12-36 (125)
167 3a2a_A Voltage-gated hydrogen 28.5 1.6E+02 0.0054 20.9 6.0 14 132-145 35-48 (58)
168 1a92_A Delta antigen; leucine 28.3 61 0.0021 22.4 3.5 23 128-150 13-35 (50)
169 4rxn_A Rubredoxin; electron tr 28.2 22 0.00076 24.8 1.3 13 271-283 38-50 (54)
170 1wle_A Seryl-tRNA synthetase; 28.1 4.3E+02 0.015 25.8 11.8 87 79-168 50-148 (501)
171 1z60_A TFIIH basal transcripti 27.9 23 0.0008 25.2 1.4 37 239-276 17-59 (59)
172 1grj_A GREA protein; transcrip 27.9 1.3E+02 0.0046 24.6 6.4 19 137-155 47-65 (158)
173 1m1j_C Fibrinogen gamma chain; 27.9 4.1E+02 0.014 25.4 11.1 25 161-185 109-133 (409)
174 1yzm_A FYVE-finger-containing 27.8 1.2E+02 0.0041 21.0 5.0 42 97-142 7-48 (51)
175 1e8j_A Rubredoxin; iron-sulfur 27.3 22 0.00077 24.5 1.2 8 238-245 37-44 (52)
176 1jad_A PLC-beta, phospholipase 27.0 3.5E+02 0.012 24.4 13.8 91 84-181 32-144 (251)
177 2v3b_B Rubredoxin 2, rubredoxi 26.9 25 0.00084 24.6 1.4 14 271-284 38-51 (55)
178 3m9b_A Proteasome-associated A 26.6 54 0.0018 29.8 3.9 32 128-159 53-84 (251)
179 2jee_A YIIU; FTSZ, septum, coi 26.4 2.1E+02 0.0071 21.6 8.2 23 134-156 53-75 (81)
180 1z0j_B FYVE-finger-containing 26.1 1.3E+02 0.0043 21.5 5.0 44 95-142 12-55 (59)
181 1weo_A Cellulose synthase, cat 26.1 38 0.0013 26.3 2.4 44 237-280 16-69 (93)
182 3u1c_A Tropomyosin alpha-1 cha 26.0 2.2E+02 0.0075 21.7 13.4 54 129-182 37-97 (101)
183 1x79_B RAB GTPase binding effe 26.0 2.5E+02 0.0085 22.3 9.0 48 132-179 16-67 (112)
184 1m1j_A Fibrinogen alpha subuni 25.8 4.1E+02 0.014 26.2 10.1 62 83-153 95-156 (491)
185 1z0k_B FYVE-finger-containing 25.7 1.1E+02 0.0039 22.4 4.8 39 100-142 28-66 (69)
186 3u59_A Tropomyosin beta chain; 25.0 2.3E+02 0.0077 21.5 13.4 53 131-183 39-98 (101)
187 2kn9_A Rubredoxin; metalloprot 24.7 32 0.0011 26.1 1.7 17 270-286 61-77 (81)
188 1sjj_A Actinin; 3-helix bundle 24.6 4.4E+02 0.015 26.5 10.8 33 136-168 443-475 (863)
189 3vem_A Helicase protein MOM1; 24.1 2.8E+02 0.0095 22.2 9.0 10 135-144 67-76 (115)
190 2i1j_A Moesin; FERM, coiled-co 22.8 53 0.0018 32.7 3.4 49 128-176 341-396 (575)
191 6rxn_A Rubredoxin; electron tr 22.8 33 0.0011 23.2 1.3 13 271-283 32-44 (46)
192 1dx8_A Rubredoxin; electron tr 22.6 32 0.0011 25.2 1.3 15 271-285 42-56 (70)
193 1d7m_A Cortexillin I; coiled-c 22.3 2.8E+02 0.0094 21.5 9.7 13 85-97 22-34 (101)
194 3cvf_A Homer-3, homer protein 22.2 2.5E+02 0.0085 21.0 7.2 26 137-162 14-39 (79)
195 1gmj_A ATPase inhibitor; coile 22.1 2.6E+02 0.009 21.2 8.3 20 131-150 60-79 (84)
196 1xaw_A Occludin; coiled-coil, 22.0 1.9E+02 0.0066 23.9 6.2 58 126-187 70-132 (140)
197 3kin_B Kinesin heavy chain; mo 21.8 1.2E+02 0.004 23.9 4.7 25 139-163 92-116 (117)
198 2wg5_A General control protein 21.7 80 0.0027 24.6 3.6 22 131-152 9-30 (109)
199 1nkp_B MAX protein, MYC proto- 21.5 88 0.003 22.8 3.7 18 137-154 62-79 (83)
200 2ve7_A Kinetochore protein HEC 21.3 1.3E+02 0.0043 27.7 5.4 37 125-161 174-210 (315)
201 2efr_A General control protein 21.2 3.6E+02 0.012 22.4 12.3 53 131-183 58-110 (155)
202 3nw0_A Non-structural maintena 21.1 54 0.0018 29.0 2.8 44 237-281 180-229 (238)
203 3sde_A Paraspeckle component 1 21.0 1.2E+02 0.0043 25.8 5.1 33 87-119 228-260 (261)
204 1zxa_A CGMP-dependent protein 21.0 1.4E+02 0.0048 21.7 4.5 12 131-142 34-45 (67)
205 1ses_A Seryl-tRNA synthetase; 20.8 4.2E+02 0.014 25.1 9.2 83 79-162 11-97 (421)
206 3oja_A Leucine-rich immune mol 20.3 5.3E+02 0.018 24.0 12.6 11 86-96 365-375 (487)
207 2qag_C Septin-7; cell cycle, c 20.1 22 0.00075 34.0 0.0 23 143-165 373-395 (418)
No 1
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=2.8e-13 Score=100.49 Aligned_cols=51 Identities=33% Similarity=0.757 Sum_probs=48.0
Q ss_pred ccccccccccccceEEeCCCCcccCcchhhhcCCCCccccccccceEEEeeC
Q 023064 237 RMLCRRCGEKESSVLLLPCRHLCLCTVCGSCLIGSCPVCNFVVDASLHVNLS 288 (288)
Q Consensus 237 ~~~C~iC~~~~~~vlLlPCrHlclC~~C~~~l~~~CPvCr~~i~~~v~V~~S 288 (288)
...|+||++++++++|+||||+++|..|... ...||+||..|...++||.+
T Consensus 15 ~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~-~~~CP~CR~~i~~~~~i~~~ 65 (68)
T 2ea5_A 15 SKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY-FQQCPMCRQFVQESFALSGP 65 (68)
T ss_dssp SSCCSSSSSSCCCCEETTTTBCCSCTTHHHH-CSSCTTTCCCCCCEECCCSS
T ss_pred CCCCCCcCcCCCCEEEECCCChhhhHHHHhc-CCCCCCCCcchhceEEeecC
Confidence 4579999999999999999999999999999 99999999999999999863
No 2
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.32 E-value=3e-13 Score=98.54 Aligned_cols=52 Identities=23% Similarity=0.520 Sum_probs=46.9
Q ss_pred ccccccccccccceEEe--CCCCcccCcchhhhc---CCCCccccccccceEEEeeC
Q 023064 237 RMLCRRCGEKESSVLLL--PCRHLCLCTVCGSCL---IGSCPVCNFVVDASLHVNLS 288 (288)
Q Consensus 237 ~~~C~iC~~~~~~vlLl--PCrHlclC~~C~~~l---~~~CPvCr~~i~~~v~V~~S 288 (288)
...|+||++++.+.+++ ||||+++|..|+..+ ...||+||.+|...++||+|
T Consensus 7 ~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i~i~~s 63 (63)
T 2vje_B 7 LKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQLVIKVFIA 63 (63)
T ss_dssp GSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCEEEEEEEC
T ss_pred CCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhceEEEecC
Confidence 34799999999988877 999999999999985 34999999999999999987
No 3
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.31 E-value=5.9e-13 Score=97.30 Aligned_cols=52 Identities=21% Similarity=0.452 Sum_probs=47.7
Q ss_pred ccccccccccccceEEe--CCCCcccCcchhhhc---CCCCccccccccceEEEeeC
Q 023064 237 RMLCRRCGEKESSVLLL--PCRHLCLCTVCGSCL---IGSCPVCNFVVDASLHVNLS 288 (288)
Q Consensus 237 ~~~C~iC~~~~~~vlLl--PCrHlclC~~C~~~l---~~~CPvCr~~i~~~v~V~~S 288 (288)
...|.||++++.+++|+ ||||+++|..|...+ ...||+||.+|...++||+|
T Consensus 8 ~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i~i~~~ 64 (64)
T 2vje_A 8 IEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMIVLTYFP 64 (64)
T ss_dssp GSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCCEEEEEECC
T ss_pred cCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchhceEeeecC
Confidence 34799999999999998 999999999999985 45799999999999999986
No 4
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=99.26 E-value=2.5e-12 Score=97.81 Aligned_cols=51 Identities=39% Similarity=0.795 Sum_probs=48.4
Q ss_pred ccccccccccccceEEeCCCCcccCcchhhhcCCCCccccccccceEEEeeC
Q 023064 237 RMLCRRCGEKESSVLLLPCRHLCLCTVCGSCLIGSCPVCNFVVDASLHVNLS 288 (288)
Q Consensus 237 ~~~C~iC~~~~~~vlLlPCrHlclC~~C~~~l~~~CPvCr~~i~~~v~V~~S 288 (288)
...|+||++...+++|+||||.++|..|... ...||+||.+|...++||++
T Consensus 18 ~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~-~~~CP~Cr~~i~~~~~i~~p 68 (79)
T 2yho_A 18 AMLCMVCCEEEINSTFCPCGHTVCCESCAAQ-LQSCPVCRSRVEHVQHVYLP 68 (79)
T ss_dssp HTBCTTTSSSBCCEEEETTCBCCBCHHHHTT-CSBCTTTCCBCCEEEECBCT
T ss_pred CCEeEEeCcccCcEEEECCCCHHHHHHHHHh-cCcCCCCCchhhCeEEEEeC
Confidence 4589999999999999999999999999999 89999999999999999975
No 5
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.25 E-value=2.9e-12 Score=95.77 Aligned_cols=52 Identities=27% Similarity=0.809 Sum_probs=48.4
Q ss_pred CccccccccccccceEEeCCCCcccCcchhhhcCCCCccccccccceEEEeeC
Q 023064 236 GRMLCRRCGEKESSVLLLPCRHLCLCTVCGSCLIGSCPVCNFVVDASLHVNLS 288 (288)
Q Consensus 236 ~~~~C~iC~~~~~~vlLlPCrHlclC~~C~~~l~~~CPvCr~~i~~~v~V~~S 288 (288)
+...|.||++...+.+++||||.++|..|... ...||+||.+|...++||+|
T Consensus 23 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~-~~~CP~Cr~~i~~~~~i~~S 74 (74)
T 4ic3_A 23 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEA-VDKCPMCYTVITFKQKILMS 74 (74)
T ss_dssp HHTBCTTTSSSBCCEEEETTCCBCCCHHHHTT-CSBCTTTCCBCSEEEECBC-
T ss_pred cCCCCCCCCCCCCCEEEcCCCChhHHHHhhhc-CccCCCcCcCccCcEEEeeC
Confidence 34589999999999999999999999999999 89999999999999999997
No 6
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=2.7e-12 Score=95.88 Aligned_cols=52 Identities=27% Similarity=0.808 Sum_probs=49.2
Q ss_pred CccccccccccccceEEeCCCCcccCcchhhhcCCCCccccccccceEEEeeC
Q 023064 236 GRMLCRRCGEKESSVLLLPCRHLCLCTVCGSCLIGSCPVCNFVVDASLHVNLS 288 (288)
Q Consensus 236 ~~~~C~iC~~~~~~vlLlPCrHlclC~~C~~~l~~~CPvCr~~i~~~v~V~~S 288 (288)
+...|.||++...+++++||||.++|..|... ...||+||.+|...++||+|
T Consensus 24 ~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~-~~~CP~Cr~~i~~~~~i~~S 75 (75)
T 2ecg_A 24 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEA-VDKCPMCYTVITFKQKIFMS 75 (75)
T ss_dssp HHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHH-CSBCTTTCCBCCCCCBCCCC
T ss_pred CCCCCCcCCCCCCCEEEecCCCHHHHHHHhhC-CCCCccCCceecCcEEEecC
Confidence 34589999999999999999999999999999 99999999999999999997
No 7
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.95 E-value=2.9e-10 Score=108.20 Aligned_cols=52 Identities=33% Similarity=0.861 Sum_probs=47.8
Q ss_pred CccccccccccccceEEeCCCCcccCcchhhhcCCCCccccccccceEEEeeC
Q 023064 236 GRMLCRRCGEKESSVLLLPCRHLCLCTVCGSCLIGSCPVCNFVVDASLHVNLS 288 (288)
Q Consensus 236 ~~~~C~iC~~~~~~vlLlPCrHlclC~~C~~~l~~~CPvCr~~i~~~v~V~~S 288 (288)
....|.||++...+.+++||||.|+|..|... ...||+||.+|...++||+|
T Consensus 294 ~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~-~~~CP~CR~~i~~~~~i~~s 345 (345)
T 3t6p_A 294 EERTCKVCMDKEVSVVFIPCGHLVVCQECAPS-LRKCPICRGIIKGTVRTFLS 345 (345)
T ss_dssp TTCBCTTTSSSBCCEEEETTCCEEECTTTGGG-CSBCTTTCCBCCEEEECC--
T ss_pred CCCCCCccCCcCCceEEcCCCChhHhHHHHhc-CCcCCCCCCCccCeEEeecC
Confidence 44689999999999999999999999999999 89999999999999999997
No 8
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.34 E-value=2.5e-07 Score=66.50 Aligned_cols=48 Identities=33% Similarity=0.726 Sum_probs=41.4
Q ss_pred cccccccccccc-eEEeCCCCcccCcchhhhc---CCCCccccccccceEEEe
Q 023064 238 MLCRRCGEKESS-VLLLPCRHLCLCTVCGSCL---IGSCPVCNFVVDASLHVN 286 (288)
Q Consensus 238 ~~C~iC~~~~~~-vlLlPCrHlclC~~C~~~l---~~~CPvCr~~i~~~v~V~ 286 (288)
..|.||++...+ ++++||+|. +|..|...+ ...||+||..+...++.+
T Consensus 6 ~~C~IC~~~~~~~~~~~~C~H~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 57 (68)
T 1chc_A 6 ERCPICLEDPSNYSMALPCLHA-FCYVCITRWIRQNPTCPLCKVPVESVVHTI 57 (68)
T ss_dssp CCCSSCCSCCCSCEEETTTTEE-ESTTHHHHHHHHSCSTTTTCCCCCCEECCC
T ss_pred CCCeeCCccccCCcEecCCCCe-eHHHHHHHHHhCcCcCcCCChhhHhhhhcc
Confidence 479999999887 689999999 899998764 689999999998877654
No 9
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=98.29 E-value=5.2e-06 Score=68.23 Aligned_cols=44 Identities=25% Similarity=0.565 Sum_probs=38.7
Q ss_pred ccccccccccceEEeCCCCcccCcchhhhc---CCCCccccccccceE
Q 023064 239 LCRRCGEKESSVLLLPCRHLCLCTVCGSCL---IGSCPVCNFVVDASL 283 (288)
Q Consensus 239 ~C~iC~~~~~~vlLlPCrHlclC~~C~~~l---~~~CPvCr~~i~~~v 283 (288)
.|.||++...+.+++||||. +|..|...+ ...||+||.++....
T Consensus 55 ~C~iC~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 101 (138)
T 4ayc_A 55 QCIICSEYFIEAVTLNCAHS-FCSYCINEWMKRKIECPICRKDIKSKT 101 (138)
T ss_dssp BCTTTCSBCSSEEEETTSCE-EEHHHHHHHTTTCSBCTTTCCBCCCEE
T ss_pred CCcccCcccCCceECCCCCC-ccHHHHHHHHHcCCcCCCCCCcCCCCC
Confidence 69999999999999999995 899998765 688999999987653
No 10
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.26 E-value=1.9e-07 Score=67.62 Aligned_cols=49 Identities=24% Similarity=0.653 Sum_probs=41.5
Q ss_pred CccccccccccccceEEeCCCCcccCcchhhhc---CCCCccccccccceEEEe
Q 023064 236 GRMLCRRCGEKESSVLLLPCRHLCLCTVCGSCL---IGSCPVCNFVVDASLHVN 286 (288)
Q Consensus 236 ~~~~C~iC~~~~~~vlLlPCrHlclC~~C~~~l---~~~CPvCr~~i~~~v~V~ 286 (288)
+...|.||++...+ +++||+|. +|..|...+ ...||+||..+.....+|
T Consensus 14 ~~~~C~IC~~~~~~-~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 65 (70)
T 2ecn_A 14 DEEECCICMDGRAD-LILPCAHS-FCQKCIDKWSDRHRNCPICRLQMTGANESS 65 (70)
T ss_dssp CCCCCSSSCCSCCS-EEETTTEE-ECHHHHHHSSCCCSSCHHHHHCTTCCCCCC
T ss_pred CCCCCeeCCcCccC-cccCCCCc-ccHHHHHHHHHCcCcCCCcCCcccCCCccc
Confidence 34579999999988 88899999 899998864 578999999998766554
No 11
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.21 E-value=7e-07 Score=65.14 Aligned_cols=44 Identities=23% Similarity=0.557 Sum_probs=38.6
Q ss_pred ccccccccccccceEEeCCCCcccCcchhhhc---CCCCccccccccc
Q 023064 237 RMLCRRCGEKESSVLLLPCRHLCLCTVCGSCL---IGSCPVCNFVVDA 281 (288)
Q Consensus 237 ~~~C~iC~~~~~~vlLlPCrHlclC~~C~~~l---~~~CPvCr~~i~~ 281 (288)
...|.||++...+.+++||+|. +|..|...+ ...||+||..+..
T Consensus 15 ~~~C~IC~~~~~~~~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 15 VPECAICLQTCVHPVSLPCKHV-FCYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp CCBCSSSSSBCSSEEEETTTEE-EEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred CCCCccCCcccCCCEEccCCCH-HHHHHHHHHHHCCCcCcCcCchhCH
Confidence 3479999999999999999999 899998874 4789999999864
No 12
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.19 E-value=9.3e-07 Score=60.80 Aligned_cols=44 Identities=30% Similarity=0.544 Sum_probs=36.6
Q ss_pred ccccccccccccc----eEEeCCCCcccCcchhhhc---CCCCccccccccc
Q 023064 237 RMLCRRCGEKESS----VLLLPCRHLCLCTVCGSCL---IGSCPVCNFVVDA 281 (288)
Q Consensus 237 ~~~C~iC~~~~~~----vlLlPCrHlclC~~C~~~l---~~~CPvCr~~i~~ 281 (288)
...|.||++.-.+ ++++||+|. +|..|...+ ...||+||..+.+
T Consensus 5 ~~~C~IC~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~g 55 (55)
T 2ecm_A 5 SSGCPICLEDIHTSRVVAHVLPCGHL-LHRTCYEEMLKEGYRCPLCSGPSSG 55 (55)
T ss_dssp CCSCTTTCCCCCTTTSCEEECTTSCE-EETTHHHHHHHHTCCCTTSCCSSCC
T ss_pred CCcCcccChhhcCCCcCeEecCCCCc-ccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 3479999987644 899999996 899998775 5899999998764
No 13
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.13 E-value=8.4e-07 Score=62.49 Aligned_cols=49 Identities=20% Similarity=0.563 Sum_probs=39.1
Q ss_pred cccccccccccc-------eEEeCCCCcccCcchhhhc---CCCCcccccccc--ceEEEee
Q 023064 238 MLCRRCGEKESS-------VLLLPCRHLCLCTVCGSCL---IGSCPVCNFVVD--ASLHVNL 287 (288)
Q Consensus 238 ~~C~iC~~~~~~-------vlLlPCrHlclC~~C~~~l---~~~CPvCr~~i~--~~v~V~~ 287 (288)
..|.||++.-.+ ++++||+|. +|..|...+ ...||+||..+. ..+.+||
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~l 64 (64)
T 2xeu_A 4 VSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINHKRYHPIYI 64 (64)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEETTSCE-EEHHHHHHHHHHCSBCTTTCCBCTTTCEEECCC
T ss_pred CCCCccChhhhCccccCCCEEeCCCCCc-hhHHHHHHHHHcCCCCCCCCccCCccceeeeeC
Confidence 479999997554 388899999 899998765 679999999987 4555553
No 14
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.11 E-value=1.3e-06 Score=63.51 Aligned_cols=45 Identities=22% Similarity=0.550 Sum_probs=38.4
Q ss_pred CccccccccccccceEEeCCCCcccCcchhhhcC------CCCccccccccc
Q 023064 236 GRMLCRRCGEKESSVLLLPCRHLCLCTVCGSCLI------GSCPVCNFVVDA 281 (288)
Q Consensus 236 ~~~~C~iC~~~~~~vlLlPCrHlclC~~C~~~l~------~~CPvCr~~i~~ 281 (288)
....|.||++...+.+++||+|. +|..|...+. ..||+||..+..
T Consensus 19 ~~~~C~IC~~~~~~~~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 19 EEVICPICLDILQKPVTIDCGHN-FCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCBCTTTCSBCSSEEECTTCCE-EEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred cCCEeccCCcccCCeEEcCCCCh-hhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 34589999999999999999999 8999988753 279999998764
No 15
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.08 E-value=2.6e-06 Score=63.49 Aligned_cols=46 Identities=20% Similarity=0.523 Sum_probs=39.3
Q ss_pred ccccccccccccceEEeCCCCcccCcchhhhc---CCCCccccccccceE
Q 023064 237 RMLCRRCGEKESSVLLLPCRHLCLCTVCGSCL---IGSCPVCNFVVDASL 283 (288)
Q Consensus 237 ~~~C~iC~~~~~~vlLlPCrHlclC~~C~~~l---~~~CPvCr~~i~~~v 283 (288)
...|.||++...+.+++||+|. +|..|...+ ...||+||..+...+
T Consensus 15 ~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 63 (81)
T 2csy_A 15 PFRCFICRQAFQNPVVTKCRHY-FCESCALEHFRATPRCYICDQPTGGIF 63 (81)
T ss_dssp CSBCSSSCSBCCSEEECTTSCE-EEHHHHHHHHHHCSBCSSSCCBCCSCC
T ss_pred CCCCcCCCchhcCeeEccCCCH-hHHHHHHHHHHCCCcCCCcCccccccC
Confidence 3479999999999999999998 699998775 678999999987443
No 16
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.01 E-value=1.1e-06 Score=63.27 Aligned_cols=44 Identities=23% Similarity=0.627 Sum_probs=36.3
Q ss_pred ccccccccccccce-------EEeCCCCcccCcchhhhc---CCCCccccccccc
Q 023064 237 RMLCRRCGEKESSV-------LLLPCRHLCLCTVCGSCL---IGSCPVCNFVVDA 281 (288)
Q Consensus 237 ~~~C~iC~~~~~~v-------lLlPCrHlclC~~C~~~l---~~~CPvCr~~i~~ 281 (288)
...|.||++.-.+- +++||+|. +|..|...+ ...||+||..+..
T Consensus 10 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 10 TVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINH 63 (71)
T ss_dssp CCBCTTTCCBHHHHHTTTCCEEECTTSCE-EEHHHHHHHHHHCSBCTTTCCBCCC
T ss_pred CCCCcccChhhhccccccCCeEeCCCCCh-HhHHHHHHHHHcCCCCCCCCCccCh
Confidence 34799999876553 88999998 899998765 6899999999873
No 17
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.00 E-value=3e-06 Score=81.98 Aligned_cols=51 Identities=29% Similarity=0.701 Sum_probs=43.9
Q ss_pred CccccccccccccceEEeCCCCcccCcchhhhc----CCCCccccccccceEEEee
Q 023064 236 GRMLCRRCGEKESSVLLLPCRHLCLCTVCGSCL----IGSCPVCNFVVDASLHVNL 287 (288)
Q Consensus 236 ~~~~C~iC~~~~~~vlLlPCrHlclC~~C~~~l----~~~CPvCr~~i~~~v~V~~ 287 (288)
....|.||++...+.+++||||.. |..|.... ...||+||..+.....|.+
T Consensus 331 ~~~~C~ICle~~~~pv~lpCGH~F-C~~Ci~~wl~~~~~~CP~CR~~i~~~~~i~v 385 (389)
T 2y1n_A 331 TFQLCKICAENDKDVKIEPCGHLM-CTSCLTSWQESEGQGCPFCRCEIKGTEPIVV 385 (389)
T ss_dssp SSSBCTTTSSSBCCEEEETTCCEE-CHHHHHHHHHHTCSBCTTTCCBCCEEEECSC
T ss_pred CCCCCCccCcCCCCeEEeCCCChh-hHHHHHHHHhcCCCCCCCCCCccCCceeEec
Confidence 346899999999999999999995 99998643 5899999999998877654
No 18
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=97.99 E-value=3.6e-06 Score=60.67 Aligned_cols=45 Identities=33% Similarity=0.665 Sum_probs=36.8
Q ss_pred ccccccccc---ccceEEeCCCCcccCcchhhhc---CCCCccccccccceE
Q 023064 238 MLCRRCGEK---ESSVLLLPCRHLCLCTVCGSCL---IGSCPVCNFVVDASL 283 (288)
Q Consensus 238 ~~C~iC~~~---~~~vlLlPCrHlclC~~C~~~l---~~~CPvCr~~i~~~v 283 (288)
..|.||++. ...++.+||+|. +|..|...+ ...||+||..+...+
T Consensus 15 ~~C~IC~~~~~~~~~~~~~~C~H~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 65 (69)
T 2kiz_A 15 EKCTICLSILEEGEDVRRLPCMHL-FHQVCVDQWLITNKKCPICRVDIEAQL 65 (69)
T ss_dssp CSBTTTTBCCCSSSCEEECTTSCE-EEHHHHHHHHHHCSBCTTTCSBSCSCC
T ss_pred CCCeeCCccccCCCcEEEeCCCCH-HHHHHHHHHHHcCCCCcCcCccccCcC
Confidence 479999664 356888999999 899998765 678999999987654
No 19
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.99 E-value=1.8e-06 Score=61.69 Aligned_cols=44 Identities=23% Similarity=0.627 Sum_probs=36.3
Q ss_pred ccccccccccccce-------EEeCCCCcccCcchhhhc---CCCCccccccccc
Q 023064 237 RMLCRRCGEKESSV-------LLLPCRHLCLCTVCGSCL---IGSCPVCNFVVDA 281 (288)
Q Consensus 237 ~~~C~iC~~~~~~v-------lLlPCrHlclC~~C~~~l---~~~CPvCr~~i~~ 281 (288)
...|.||++...+. +++||+|. +|..|...+ ...||+||..++.
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 15 TVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp CCCCTTTCCCHHHHTTTTCCEEECSSSCE-EEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCcccCccccccccccCCeEeCCCCCh-hcHHHHHHHHHcCCCCCCCCCccCc
Confidence 34799999976654 88999996 899998775 6799999998764
No 20
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=97.95 E-value=4.8e-06 Score=57.25 Aligned_cols=42 Identities=26% Similarity=0.627 Sum_probs=35.1
Q ss_pred cccccccccccc---eEEeC-CCCcccCcchhhhc---CCCCcccccccc
Q 023064 238 MLCRRCGEKESS---VLLLP-CRHLCLCTVCGSCL---IGSCPVCNFVVD 280 (288)
Q Consensus 238 ~~C~iC~~~~~~---vlLlP-CrHlclC~~C~~~l---~~~CPvCr~~i~ 280 (288)
..|.||++.-.. ++.+| |+|. +|..|.... ...||+||..+.
T Consensus 6 ~~C~IC~~~~~~~~~~~~~~~C~H~-f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 6 VECAVCLAELEDGEEARFLPRCGHG-FHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCCTTTCCCCCTTSCCEECSSSCCE-ECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CcCccCCccccCCCceEECCCCCCc-ccHHHHHHHHHcCCcCcCCCCEeE
Confidence 479999987666 77888 9998 899998765 688999998764
No 21
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=97.95 E-value=4.3e-06 Score=61.61 Aligned_cols=45 Identities=36% Similarity=0.676 Sum_probs=36.0
Q ss_pred cccccccccc---ccceEEeCCCCcccCcchhhhc---CCCCccccccccce
Q 023064 237 RMLCRRCGEK---ESSVLLLPCRHLCLCTVCGSCL---IGSCPVCNFVVDAS 282 (288)
Q Consensus 237 ~~~C~iC~~~---~~~vlLlPCrHlclC~~C~~~l---~~~CPvCr~~i~~~ 282 (288)
...|.||++. ...+.++||+|. +|..|...+ ...||+||..+...
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~C~H~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (78)
T 2ect_A 15 GLECPVCKEDYALGESVRQLPCNHL-FHDSCIVPWLEQHDSCPVCRKSLTGQ 65 (78)
T ss_dssp SCCCTTTTSCCCTTSCEEECTTSCE-EETTTTHHHHTTTCSCTTTCCCCCCS
T ss_pred CCCCeeCCccccCCCCEEEeCCCCe-ecHHHHHHHHHcCCcCcCcCCccCCc
Confidence 3479999654 456778899997 899998765 67899999998753
No 22
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.93 E-value=4e-06 Score=62.71 Aligned_cols=45 Identities=29% Similarity=0.587 Sum_probs=37.5
Q ss_pred Cccccccccccccc----eEEeCCCCcccCcchhhhc---C---CCCccccccccc
Q 023064 236 GRMLCRRCGEKESS----VLLLPCRHLCLCTVCGSCL---I---GSCPVCNFVVDA 281 (288)
Q Consensus 236 ~~~~C~iC~~~~~~----vlLlPCrHlclC~~C~~~l---~---~~CPvCr~~i~~ 281 (288)
+...|.||++.-.+ .+++||+|. +|..|...+ . ..||+||..+..
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 14 EVLECPICMESFTEEQLRPKLLHCGHT-ICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp SCCBCTTTCCBCCTTSSCEEECSSSCE-EEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred CCCCCccCCccccccCCCeEECCCCCh-hhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 34579999998887 888999997 799998875 2 689999998653
No 23
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.91 E-value=3.2e-06 Score=59.44 Aligned_cols=44 Identities=30% Similarity=0.659 Sum_probs=37.4
Q ss_pred ccccccccccccceEEeCCCCcccCcchhhhcCCCCccccccccc
Q 023064 237 RMLCRRCGEKESSVLLLPCRHLCLCTVCGSCLIGSCPVCNFVVDA 281 (288)
Q Consensus 237 ~~~C~iC~~~~~~vlLlPCrHlclC~~C~~~l~~~CPvCr~~i~~ 281 (288)
...|.||++...+-+++||+|. +|..|.......||+||..+..
T Consensus 6 ~~~C~IC~~~~~~p~~l~CgH~-fC~~Ci~~~~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 6 FLRCQQCQAEAKCPKLLPCLHT-LCSGCLEASGMQCPICQAPWPL 49 (56)
T ss_dssp CSSCSSSCSSCBCCSCSTTSCC-SBTTTCSSSSSSCSSCCSSSSC
T ss_pred CCCceEeCCccCCeEEcCCCCc-ccHHHHccCCCCCCcCCcEeec
Confidence 3479999999999999999998 7999976535789999998763
No 24
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.89 E-value=5.8e-06 Score=60.68 Aligned_cols=44 Identities=25% Similarity=0.569 Sum_probs=36.0
Q ss_pred cccccccccc---ccceEEeCCCCcccCcchhhhc---CCCCccccccccc
Q 023064 237 RMLCRRCGEK---ESSVLLLPCRHLCLCTVCGSCL---IGSCPVCNFVVDA 281 (288)
Q Consensus 237 ~~~C~iC~~~---~~~vlLlPCrHlclC~~C~~~l---~~~CPvCr~~i~~ 281 (288)
...|.||++. ...++.+||+|. +|..|...+ ...||+||..+..
T Consensus 23 ~~~C~IC~~~~~~~~~~~~l~C~H~-fh~~Ci~~w~~~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 23 QTLCVVCMCDFESRQLLRVLPCNHE-FHAKCVDKWLKANRTCPICRADSGP 72 (75)
T ss_dssp CCEETTTTEECCBTCEEEEETTTEE-EETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCeECCcccCCCCeEEEECCCCH-hHHHHHHHHHHcCCcCcCcCCcCCC
Confidence 3479999965 345688999998 899998775 6899999998865
No 25
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.88 E-value=8.7e-06 Score=59.38 Aligned_cols=46 Identities=28% Similarity=0.611 Sum_probs=38.1
Q ss_pred CccccccccccccceEEe-CCCCcccCcchhhhc---CCCCccccccccce
Q 023064 236 GRMLCRRCGEKESSVLLL-PCRHLCLCTVCGSCL---IGSCPVCNFVVDAS 282 (288)
Q Consensus 236 ~~~~C~iC~~~~~~vlLl-PCrHlclC~~C~~~l---~~~CPvCr~~i~~~ 282 (288)
+...|.||++...+.+.+ ||+|. +|..|.... ...||+||..+...
T Consensus 14 ~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (72)
T 2djb_A 14 PYILCSICKGYLIDATTITECLHT-FCKSCIVRHFYYSNRCPKCNIVVHQT 63 (72)
T ss_dssp GGGSCTTTSSCCSSCEECSSSCCE-ECHHHHHHHHHHCSSCTTTCCCCCSS
T ss_pred CCCCCCCCChHHHCcCEECCCCCH-HHHHHHHHHHHcCCcCCCcCcccCcc
Confidence 345899999998877776 99998 699998664 67999999988653
No 26
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=97.86 E-value=5.7e-06 Score=63.42 Aligned_cols=46 Identities=30% Similarity=0.671 Sum_probs=37.2
Q ss_pred Cccccccccccccc---eEEeCCCCcccCcchhhhc---CCCCccccccccce
Q 023064 236 GRMLCRRCGEKESS---VLLLPCRHLCLCTVCGSCL---IGSCPVCNFVVDAS 282 (288)
Q Consensus 236 ~~~~C~iC~~~~~~---vlLlPCrHlclC~~C~~~l---~~~CPvCr~~i~~~ 282 (288)
....|.||++.-.. ++.+||+|. +|..|...+ ...||+||..+...
T Consensus 39 ~~~~C~IC~~~~~~~~~~~~l~C~H~-Fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 90 (91)
T 2l0b_A 39 QEMCCPICCSEYVKGDVATELPCHHY-FHKPCVSIWLQKSGTCPVCRCMFPPP 90 (91)
T ss_dssp SCSEETTTTEECCTTCEEEEETTTEE-EEHHHHHHHHTTTCBCTTTCCBSSCC
T ss_pred CCCCCcccChhhcCCCcEEecCCCCh-HHHHHHHHHHHcCCcCcCcCccCCCC
Confidence 34579999876555 888999997 899998765 67999999988653
No 27
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.84 E-value=6.9e-06 Score=60.63 Aligned_cols=45 Identities=31% Similarity=0.648 Sum_probs=38.0
Q ss_pred CccccccccccccceEEeCCCCcccCcchhhhc---------CCCCccccccccc
Q 023064 236 GRMLCRRCGEKESSVLLLPCRHLCLCTVCGSCL---------IGSCPVCNFVVDA 281 (288)
Q Consensus 236 ~~~~C~iC~~~~~~vlLlPCrHlclC~~C~~~l---------~~~CPvCr~~i~~ 281 (288)
+...|.||++...+.+++||+|. +|..|...+ ...||+||..+..
T Consensus 18 ~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 18 EEVTCPICLELLTQPLSLDCGHS-FCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCTTTCSCCSSCBCCSSSCC-BCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred CCCCCCCCCcccCCceeCCCCCH-HHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 34589999999888888999998 899998664 4689999998874
No 28
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.81 E-value=6.9e-06 Score=58.86 Aligned_cols=45 Identities=22% Similarity=0.510 Sum_probs=38.1
Q ss_pred CccccccccccccceEEeCCCCcccCcchhhhc----CCCCccccccccc
Q 023064 236 GRMLCRRCGEKESSVLLLPCRHLCLCTVCGSCL----IGSCPVCNFVVDA 281 (288)
Q Consensus 236 ~~~~C~iC~~~~~~vlLlPCrHlclC~~C~~~l----~~~CPvCr~~i~~ 281 (288)
+...|.||++...+.+.+||+|. +|..|.... ...||+||..+..
T Consensus 14 ~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 14 DKYKCEKCHLVLCSPKQTECGHR-FCESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp CCEECTTTCCEESSCCCCSSSCC-CCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred cCCCCCCCChHhcCeeECCCCCH-HHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 44689999999888888999999 799998764 4689999998764
No 29
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.79 E-value=8.8e-06 Score=59.35 Aligned_cols=46 Identities=28% Similarity=0.564 Sum_probs=37.1
Q ss_pred ccccccccc---ccceEEeCCCCcccCcchhhhc---CCCCccccccccceEE
Q 023064 238 MLCRRCGEK---ESSVLLLPCRHLCLCTVCGSCL---IGSCPVCNFVVDASLH 284 (288)
Q Consensus 238 ~~C~iC~~~---~~~vlLlPCrHlclC~~C~~~l---~~~CPvCr~~i~~~v~ 284 (288)
..|.||++. ...+.++||+|. +|..|...+ ...||+||..+.....
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~C~H~-f~~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 67 (74)
T 2ep4_A 16 ELCAVCLEDFKPRDELGICPCKHA-FHRKCLIKWLEVRKVCPLCNMPVLQLAQ 67 (74)
T ss_dssp CBCSSSCCBCCSSSCEEEETTTEE-EEHHHHHHHHHHCSBCTTTCCBCSSCCS
T ss_pred CCCcCCCcccCCCCcEEEcCCCCE-ecHHHHHHHHHcCCcCCCcCcccccccc
Confidence 479999986 355677799999 899998765 6799999999876543
No 30
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=97.76 E-value=7.4e-06 Score=60.13 Aligned_cols=45 Identities=33% Similarity=0.646 Sum_probs=37.4
Q ss_pred CccccccccccccceEEeCCCCcccCcchhhhc----------CCCCccccccccc
Q 023064 236 GRMLCRRCGEKESSVLLLPCRHLCLCTVCGSCL----------IGSCPVCNFVVDA 281 (288)
Q Consensus 236 ~~~~C~iC~~~~~~vlLlPCrHlclC~~C~~~l----------~~~CPvCr~~i~~ 281 (288)
+...|.||++...+.+.+||+|. +|..|...+ ...||+||..+..
T Consensus 11 ~~~~C~IC~~~~~~p~~l~CgH~-fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 11 EEVTCPICLELLTEPLSLDCGHS-LCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCEETTTTEECSSCCCCSSSCC-CCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred cCCCCcCCCcccCCeeECCCCCH-HHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 34589999999888888999997 899998754 2479999998863
No 31
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=97.76 E-value=1e-05 Score=65.05 Aligned_cols=43 Identities=26% Similarity=0.582 Sum_probs=37.3
Q ss_pred cccccccccccceEEeCCCCcccCcchhhhc----CCCCccccccccc
Q 023064 238 MLCRRCGEKESSVLLLPCRHLCLCTVCGSCL----IGSCPVCNFVVDA 281 (288)
Q Consensus 238 ~~C~iC~~~~~~vlLlPCrHlclC~~C~~~l----~~~CPvCr~~i~~ 281 (288)
..|.||++.-.+-+.+||||. +|..|.... ...||+||..+..
T Consensus 53 ~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 53 FQCICCQELVFRPITTVCQHN-VCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp TBCTTTSSBCSSEEECTTSCE-EEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCCCcCChHHcCcEEeeCCCc-ccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 479999999999999999998 799998654 3499999999875
No 32
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.76 E-value=1.3e-05 Score=59.19 Aligned_cols=44 Identities=27% Similarity=0.591 Sum_probs=37.4
Q ss_pred ccccccccccccceEEeCCCCcccCcchhhhc---------CCCCccccccccc
Q 023064 237 RMLCRRCGEKESSVLLLPCRHLCLCTVCGSCL---------IGSCPVCNFVVDA 281 (288)
Q Consensus 237 ~~~C~iC~~~~~~vlLlPCrHlclC~~C~~~l---------~~~CPvCr~~i~~ 281 (288)
...|.||++...+-+++||+|. +|..|...+ ...||+||..+..
T Consensus 19 ~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 19 EVTCPICLELLKEPVSADCNHS-FCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp TTSCTTTCSCCSSCEECTTSCC-BCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred CCCCcCCChhhCcceeCCCCCH-HHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 4579999999888889999998 899998664 3579999999864
No 33
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.73 E-value=9.4e-06 Score=57.95 Aligned_cols=43 Identities=33% Similarity=0.743 Sum_probs=33.3
Q ss_pred cccccccc----cccc-eEEeCCCCcccCcchhhhc----CCCCccccccccc
Q 023064 238 MLCRRCGE----KESS-VLLLPCRHLCLCTVCGSCL----IGSCPVCNFVVDA 281 (288)
Q Consensus 238 ~~C~iC~~----~~~~-vlLlPCrHlclC~~C~~~l----~~~CPvCr~~i~~ 281 (288)
..|.||++ ++.. ++++||||. +|..|...+ ...||+||.++..
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 4 QGCPRCKTTKYRNPSLKLMVNVCGHT-LCESCVDLLFVRGAGNCPECGTPLRK 55 (65)
T ss_dssp TCCSTTTTHHHHCSSCCEEECTTCCC-EEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred CcCCcCCCCccCCCccCeecCCCCCH-hHHHHHHHHHHcCCCcCCCCCCcccc
Confidence 47999999 2322 266899998 899998775 3679999998863
No 34
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=97.70 E-value=2e-05 Score=57.96 Aligned_cols=44 Identities=23% Similarity=0.630 Sum_probs=37.3
Q ss_pred CccccccccccccceEEeC-CCCcccCcchhhhc---C--CCCcccccccc
Q 023064 236 GRMLCRRCGEKESSVLLLP-CRHLCLCTVCGSCL---I--GSCPVCNFVVD 280 (288)
Q Consensus 236 ~~~~C~iC~~~~~~vlLlP-CrHlclC~~C~~~l---~--~~CPvCr~~i~ 280 (288)
....|.||++.-.+-+.+| |+|. +|..|...+ . ..||+||..+.
T Consensus 14 ~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 14 DELLCLICKDIMTDAVVIPCCGNS-YCDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp GGGSCSSSCCCCTTCEECSSSCCE-ECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred CCCCCcCCChHHhCCeEcCCCCCH-HHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 3458999999999999999 9998 899998775 2 58999999743
No 35
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.69 E-value=1.2e-05 Score=62.84 Aligned_cols=44 Identities=25% Similarity=0.587 Sum_probs=37.0
Q ss_pred ccccccccccccceEEeCCCCcccCcchhhhc--C----CCCccccccccc
Q 023064 237 RMLCRRCGEKESSVLLLPCRHLCLCTVCGSCL--I----GSCPVCNFVVDA 281 (288)
Q Consensus 237 ~~~C~iC~~~~~~vlLlPCrHlclC~~C~~~l--~----~~CPvCr~~i~~ 281 (288)
...|.||++...+.+.+||||. +|..|.... . ..||+||..+..
T Consensus 21 ~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 21 ILECPICLELIKEPVSTKCDHI-FCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp HTSCSSSCCCCSSCCBCTTSCC-CCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred CCCCcccChhhcCeEECCCCCH-HHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 3479999999888888999998 799998765 2 379999998764
No 36
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=97.66 E-value=1.4e-05 Score=63.19 Aligned_cols=44 Identities=32% Similarity=0.625 Sum_probs=37.5
Q ss_pred ccccccccccccceEEeCCCCcccCcchhhhc----CCCCccccccccc
Q 023064 237 RMLCRRCGEKESSVLLLPCRHLCLCTVCGSCL----IGSCPVCNFVVDA 281 (288)
Q Consensus 237 ~~~C~iC~~~~~~vlLlPCrHlclC~~C~~~l----~~~CPvCr~~i~~ 281 (288)
...|.||++.-.+-+.+||||. +|..|...+ ...||+||..+..
T Consensus 15 ~~~C~iC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 15 ECQCGICMEILVEPVTLPCNHT-LCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHBCTTTCSBCSSCEECTTSCE-ECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCccCCcccCceeEcCCCCH-HhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 3579999999999899999998 899998765 3489999998763
No 37
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=97.65 E-value=2.7e-05 Score=59.02 Aligned_cols=43 Identities=23% Similarity=0.660 Sum_probs=36.7
Q ss_pred CccccccccccccceEEeC-CCCcccCcchhhhc-----CCCCccccccc
Q 023064 236 GRMLCRRCGEKESSVLLLP-CRHLCLCTVCGSCL-----IGSCPVCNFVV 279 (288)
Q Consensus 236 ~~~~C~iC~~~~~~vlLlP-CrHlclC~~C~~~l-----~~~CPvCr~~i 279 (288)
+...|.||++.-.+-+.+| |||. +|..|.... ...||+||..+
T Consensus 12 ~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 12 DELLCLICKDIMTDAVVIPCCGNS-YCDECIRTALLESDEHTCPTCHQND 60 (92)
T ss_dssp TTTEETTTTEECSSCEECTTTCCE-ECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred cCCCCCCCChhhcCceECCCCCCH-HHHHHHHHHHHhcCCCcCcCCCCcC
Confidence 4458999999988989999 9999 799998664 25899999986
No 38
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=97.63 E-value=2e-05 Score=60.71 Aligned_cols=44 Identities=25% Similarity=0.623 Sum_probs=37.2
Q ss_pred ccccccccccccceEEe-CCCCcccCcchhhhc---CCCCccccccccc
Q 023064 237 RMLCRRCGEKESSVLLL-PCRHLCLCTVCGSCL---IGSCPVCNFVVDA 281 (288)
Q Consensus 237 ~~~C~iC~~~~~~vlLl-PCrHlclC~~C~~~l---~~~CPvCr~~i~~ 281 (288)
...|.||++.-.+-+.+ ||||. +|..|.... ...||+||..+..
T Consensus 22 ~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 22 LLRCGICFEYFNIAMIIPQCSHN-YCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HTBCTTTCSBCSSEEECTTTCCE-EEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCcccCChhhCCcCEECCCCCH-hhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 34799999998888777 99998 799998765 5689999998874
No 39
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=97.63 E-value=1.1e-05 Score=61.03 Aligned_cols=47 Identities=23% Similarity=0.562 Sum_probs=36.8
Q ss_pred ccccccccccc--cceEEeC--CCCcccCcchhhhc----CCCCccccccccceEE
Q 023064 237 RMLCRRCGEKE--SSVLLLP--CRHLCLCTVCGSCL----IGSCPVCNFVVDASLH 284 (288)
Q Consensus 237 ~~~C~iC~~~~--~~vlLlP--CrHlclC~~C~~~l----~~~CPvCr~~i~~~v~ 284 (288)
...|.||++.- .++.++| |||. +|..|...+ ...||+||.++.....
T Consensus 11 ~~~CpICle~~~~~d~~~~p~~CGH~-fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 11 PVECPLCMEPLEIDDINFFPCTCGYQ-ICRFCWHRIRTDENGLCPACRKPYPEDPA 65 (78)
T ss_dssp CCBCTTTCCBCCTTTTTCCSSTTSCC-CCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred CCcCCccCccCccccccccccCCCCC-cCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence 34799999965 3566776 9998 899998774 3589999999876543
No 40
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=97.61 E-value=2.1e-05 Score=61.22 Aligned_cols=45 Identities=27% Similarity=0.482 Sum_probs=38.1
Q ss_pred CccccccccccccceEE-eCCCCcccCcchhhhc---C-CCCccccccccc
Q 023064 236 GRMLCRRCGEKESSVLL-LPCRHLCLCTVCGSCL---I-GSCPVCNFVVDA 281 (288)
Q Consensus 236 ~~~~C~iC~~~~~~vlL-lPCrHlclC~~C~~~l---~-~~CPvCr~~i~~ 281 (288)
+...|.||++...+-+. +||||. +|..|.... . ..||+||.++..
T Consensus 21 ~~~~C~IC~~~~~~p~~~~~CgH~-FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 21 EVFRCFICMEKLRDARLCPHCSKL-CCFSCIRRWLTEQRAQCPHCRAPLQL 70 (100)
T ss_dssp HHTBCTTTCSBCSSEEECTTTCCE-EEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCccCCccccCccccCCCCCh-hhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence 34579999999999888 999999 799998765 3 689999998753
No 41
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=97.59 E-value=2.8e-05 Score=60.92 Aligned_cols=45 Identities=24% Similarity=0.633 Sum_probs=38.4
Q ss_pred CccccccccccccceEEe-CCCCcccCcchhhhc---CCCCccccccccc
Q 023064 236 GRMLCRRCGEKESSVLLL-PCRHLCLCTVCGSCL---IGSCPVCNFVVDA 281 (288)
Q Consensus 236 ~~~~C~iC~~~~~~vlLl-PCrHlclC~~C~~~l---~~~CPvCr~~i~~ 281 (288)
+...|.||++.-.+-+.+ ||||. +|..|.... ...||+||..+..
T Consensus 14 ~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 14 PHLMCVLCGGYFIDATTIIECLHS-FCKTCIVRYLETSKYCPICDVQVHK 62 (108)
T ss_dssp GGTBCTTTSSBCSSEEEETTTCCE-EEHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred CcCCCccCChHHhCcCEeCCCCCh-hhHHHHHHHHHhCCcCcCCCccccc
Confidence 345899999998888887 99998 799998775 5789999999875
No 42
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=97.59 E-value=2.4e-05 Score=65.73 Aligned_cols=44 Identities=25% Similarity=0.550 Sum_probs=37.8
Q ss_pred cccccccccccceEEeCCCCcccCcchhhhc----CCCCccccccccce
Q 023064 238 MLCRRCGEKESSVLLLPCRHLCLCTVCGSCL----IGSCPVCNFVVDAS 282 (288)
Q Consensus 238 ~~C~iC~~~~~~vlLlPCrHlclC~~C~~~l----~~~CPvCr~~i~~~ 282 (288)
..|.||++...+-+.+||+|. +|..|.... ...||+||..+...
T Consensus 79 ~~C~IC~~~~~~pv~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 79 FMCVCCQELVYQPVTTECFHN-VCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp TBCTTTSSBCSSEEECTTSCE-EEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred CEeecCChhhcCCEEcCCCCc-hhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 479999999999999999997 799998765 24899999998754
No 43
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=97.53 E-value=3.8e-05 Score=56.48 Aligned_cols=45 Identities=9% Similarity=0.016 Sum_probs=38.1
Q ss_pred CccccccccccccceEEeCCCCcccCcchhhhc----CCCCccccccccc
Q 023064 236 GRMLCRRCGEKESSVLLLPCRHLCLCTVCGSCL----IGSCPVCNFVVDA 281 (288)
Q Consensus 236 ~~~~C~iC~~~~~~vlLlPCrHlclC~~C~~~l----~~~CPvCr~~i~~ 281 (288)
+...|.||++--.+-+.+||||. +|..|.... ...||+||..+..
T Consensus 7 ~~~~C~IC~~~~~~Pv~~~CgH~-fc~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 7 EYFRCPISLELMKDPVIVSTGQT-YERSSIQKWLDAGHKTCPKSQETLLH 55 (78)
T ss_dssp SSSSCTTTSCCCSSEEEETTTEE-EEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred ccCCCCCccccccCCEEcCCCCe-ecHHHHHHHHHHCcCCCCCCcCCCCh
Confidence 44589999999888899999999 799998665 4579999999864
No 44
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=97.53 E-value=3.5e-05 Score=64.75 Aligned_cols=44 Identities=20% Similarity=0.529 Sum_probs=36.9
Q ss_pred CccccccccccccceEEe-CCCCcccCcchhhhc----CCCCcccccccc
Q 023064 236 GRMLCRRCGEKESSVLLL-PCRHLCLCTVCGSCL----IGSCPVCNFVVD 280 (288)
Q Consensus 236 ~~~~C~iC~~~~~~vlLl-PCrHlclC~~C~~~l----~~~CPvCr~~i~ 280 (288)
....|.||++.-.+.+.+ ||||. +|..|...+ ...||+||..+.
T Consensus 53 ~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~ 101 (165)
T 2ckl_B 53 SELMCPICLDMLKNTMTTKECLHR-FCADCIITALRSGNKECPTCRKKLV 101 (165)
T ss_dssp HHHBCTTTSSBCSSEEEETTTCCE-EEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCCCCcccChHhhCcCEeCCCCCh-hHHHHHHHHHHhCcCCCCCCCCcCC
Confidence 345899999998888777 99997 799998775 457999999885
No 45
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.49 E-value=5e-05 Score=53.68 Aligned_cols=39 Identities=23% Similarity=0.679 Sum_probs=33.2
Q ss_pred CccccccccccccceEEeCCCCcccCcchhhhc------CCCCccc
Q 023064 236 GRMLCRRCGEKESSVLLLPCRHLCLCTVCGSCL------IGSCPVC 275 (288)
Q Consensus 236 ~~~~C~iC~~~~~~vlLlPCrHlclC~~C~~~l------~~~CPvC 275 (288)
+...|.||++...+.+++||+|. +|..|...+ ...||+|
T Consensus 19 ~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 19 EEVICPICLDILQKPVTIDCGHN-FCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCBCTTTCSBCSSCEECTTSSE-ECHHHHHHHHHHCSSCCCCSCC
T ss_pred cCCCCCcCCchhCCeEEeCCCCc-chHHHHHHHHHcCCCCCcCcCC
Confidence 34589999999999999999999 899998765 2479998
No 46
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=97.45 E-value=5.8e-05 Score=60.19 Aligned_cols=45 Identities=24% Similarity=0.441 Sum_probs=38.4
Q ss_pred CccccccccccccceEEeCCCCcccCcchhhhc----CCCCccccccccc
Q 023064 236 GRMLCRRCGEKESSVLLLPCRHLCLCTVCGSCL----IGSCPVCNFVVDA 281 (288)
Q Consensus 236 ~~~~C~iC~~~~~~vlLlPCrHlclC~~C~~~l----~~~CPvCr~~i~~ 281 (288)
+...|.||++.-.+-+.+||||. +|..|.... ...||+||..+..
T Consensus 17 ~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 17 SKYECPICLMALREAVQTPCGHR-FCKACIIKSIRDAGHKCPVDNEILLE 65 (118)
T ss_dssp GGGBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCcCChhhcCeEECCcCCh-hhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence 34589999999988899999998 899998765 3499999999875
No 47
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.42 E-value=5.2e-05 Score=60.39 Aligned_cols=44 Identities=30% Similarity=0.592 Sum_probs=37.6
Q ss_pred CccccccccccccceEEe-CCCCcccCcchhhhc-CCCCcccccccc
Q 023064 236 GRMLCRRCGEKESSVLLL-PCRHLCLCTVCGSCL-IGSCPVCNFVVD 280 (288)
Q Consensus 236 ~~~~C~iC~~~~~~vlLl-PCrHlclC~~C~~~l-~~~CPvCr~~i~ 280 (288)
....|.||++.-.+-+++ ||||. +|..|.... ...||+||..+.
T Consensus 21 ~~~~C~IC~~~~~~pv~~~~CgH~-fC~~Ci~~~~~~~CP~Cr~~~~ 66 (117)
T 1jm7_B 21 KLLRCSRCTNILREPVCLGGCEHI-FCSNCVSDCIGTGCPVCYTPAW 66 (117)
T ss_dssp HTTSCSSSCSCCSSCBCCCSSSCC-BCTTTGGGGTTTBCSSSCCBCS
T ss_pred hCCCCCCCChHhhCccEeCCCCCH-HHHHHHHHHhcCCCcCCCCcCc
Confidence 345899999999998988 99998 799999874 358999999875
No 48
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.42 E-value=6e-05 Score=51.99 Aligned_cols=39 Identities=28% Similarity=0.624 Sum_probs=33.1
Q ss_pred CccccccccccccceEEeCCCCcccCcchhhhc------CCCCccc
Q 023064 236 GRMLCRRCGEKESSVLLLPCRHLCLCTVCGSCL------IGSCPVC 275 (288)
Q Consensus 236 ~~~~C~iC~~~~~~vlLlPCrHlclC~~C~~~l------~~~CPvC 275 (288)
+...|.||++...+.+++||+|. +|..|.... ...||+|
T Consensus 14 ~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 14 VEASCSVCLEYLKEPVIIECGHN-FCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCBCSSSCCBCSSCCCCSSCCC-CCHHHHHHHTTSSCCSCCCSCC
T ss_pred cCCCCccCCcccCccEeCCCCCc-cCHHHHHHHHHhcCCCCCCCCC
Confidence 34579999999999899999999 899997664 3689998
No 49
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=97.36 E-value=5.6e-05 Score=59.94 Aligned_cols=45 Identities=24% Similarity=0.662 Sum_probs=36.8
Q ss_pred Cccccccccccccce-------EEeCCCCcccCcchhhhc---CCCCccccccccc
Q 023064 236 GRMLCRRCGEKESSV-------LLLPCRHLCLCTVCGSCL---IGSCPVCNFVVDA 281 (288)
Q Consensus 236 ~~~~C~iC~~~~~~v-------lLlPCrHlclC~~C~~~l---~~~CPvCr~~i~~ 281 (288)
+...|.||++.-.+- +++||||. +|..|.... ...||+||..+..
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~ 60 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINH 60 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEETTCCE-EEHHHHHHHHTTCSBCTTTCCBCTT
T ss_pred CCCCCcccChhhhCccccccCeEecCCCCh-hhHHHHHHHHHhCCCCCCCCCcCcc
Confidence 345899999876554 88999996 899998765 5799999998874
No 50
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=97.32 E-value=8.6e-05 Score=58.74 Aligned_cols=44 Identities=23% Similarity=0.604 Sum_probs=37.9
Q ss_pred ccccccccccccceEEeCCCCcccCcchhhhc----CCCCccccccccc
Q 023064 237 RMLCRRCGEKESSVLLLPCRHLCLCTVCGSCL----IGSCPVCNFVVDA 281 (288)
Q Consensus 237 ~~~C~iC~~~~~~vlLlPCrHlclC~~C~~~l----~~~CPvCr~~i~~ 281 (288)
...|.||++...+.+.+||||. +|..|.... ...||+||..+..
T Consensus 23 ~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 23 SISCQICEHILADPVETSCKHL-FCRICILRCLKVMGSYCPSCRYPCFP 70 (116)
T ss_dssp HTBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCCCCcHhcCcEEcCCCCc-ccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence 3579999999999999999999 799998664 4689999999764
No 51
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=97.26 E-value=8.2e-05 Score=58.47 Aligned_cols=42 Identities=26% Similarity=0.471 Sum_probs=32.2
Q ss_pred ccccccccc------------------cceEEeCCCCcccCcchhhhc--------CCCCccccccccc
Q 023064 239 LCRRCGEKE------------------SSVLLLPCRHLCLCTVCGSCL--------IGSCPVCNFVVDA 281 (288)
Q Consensus 239 ~C~iC~~~~------------------~~vlLlPCrHlclC~~C~~~l--------~~~CPvCr~~i~~ 281 (288)
.|.||++.- ..+.++||+|. +|..|...+ ...||+||..+..
T Consensus 27 ~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~-Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 27 DCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHA-FHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp EETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCE-ECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred cCccCChhhcCcccccccccccccCcccceecCCCCCc-ccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 699998764 23458899997 899997653 3589999988753
No 52
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=97.25 E-value=0.00012 Score=57.98 Aligned_cols=51 Identities=22% Similarity=0.583 Sum_probs=40.0
Q ss_pred Cccccccccccccce-------EEeCCCCcccCcchhhhc---CCCCcccccccc--ceEEEee
Q 023064 236 GRMLCRRCGEKESSV-------LLLPCRHLCLCTVCGSCL---IGSCPVCNFVVD--ASLHVNL 287 (288)
Q Consensus 236 ~~~~C~iC~~~~~~v-------lLlPCrHlclC~~C~~~l---~~~CPvCr~~i~--~~v~V~~ 287 (288)
+...|.||++.-... +.+||+|. +|..|.... ...||+||..+. ..+.+|+
T Consensus 71 ~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~ 133 (133)
T 4ap4_A 71 GTVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINHKRYHPIYI 133 (133)
T ss_dssp SSCBCTTTCCBHHHHHHTTCCEEEETTSBE-EEHHHHHHHHHHCSBCTTTCCBCCGGGEEEECC
T ss_pred CCCCCCCCCCccccccccCcceEeCCCCCh-hhHHHHHHHHHcCCCCCCCCCcCChhcceeeeC
Confidence 455799999876553 88899999 899998765 789999999876 4455553
No 53
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.14 E-value=0.00018 Score=54.01 Aligned_cols=41 Identities=29% Similarity=0.583 Sum_probs=28.5
Q ss_pred cccccccc---cc-ceEEeCCCCcccCcchhhhc---CCCCcccccccc
Q 023064 239 LCRRCGEK---ES-SVLLLPCRHLCLCTVCGSCL---IGSCPVCNFVVD 280 (288)
Q Consensus 239 ~C~iC~~~---~~-~vlLlPCrHlclC~~C~~~l---~~~CPvCr~~i~ 280 (288)
.|.||.+. .. .+++.+|+|. ++..|.... ..+||+||..+.
T Consensus 28 ~C~iC~~~~~~~~~~~~~~~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~~~ 75 (81)
T 2ecl_A 28 ACLRCQAENKQEDCVVVWGECNHS-FHNCCMSLWVKQNNRCPLCQQDWV 75 (81)
T ss_dssp CCTTHHHHTCTTTCCEEEETTSCE-EEHHHHHHHTTTCCBCTTTCCBCC
T ss_pred cCcccccccCCCceEEEeCCCCCc-cChHHHHHHHHhCCCCCCcCCCcc
Confidence 35555542 12 3344459999 899998764 679999999865
No 54
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=97.13 E-value=0.0013 Score=57.32 Aligned_cols=137 Identities=12% Similarity=0.016 Sum_probs=69.8
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Q 023064 89 QQSEIDRYIAQHTEKVILELEEQRKRQSRMLISAIQEGVANKLKEKDEEIHRMRKLN--WVLQERVKSLFVENQIWRDLA 166 (288)
Q Consensus 89 Q~~EiD~~i~~q~Erlr~~L~e~r~r~~r~ll~avE~~~~~rLReKe~Eie~a~r~n--~eLEErlrql~~E~qaWq~~A 166 (288)
...||...|+.=-.+-+...+++|.++...|.+.++..+. ++++.+++...++. ..+++..+.+.
T Consensus 11 ~~~~I~~~l~~aKk~~w~~~e~~r~~~~~~l~~~~~~l~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~---------- 77 (179)
T 2f42_A 11 FGDDIPSALRIAKKKRWNSIEEKRISQENELHAYLSKLIL---AEKERELDDRVKQSDDSQNGGDISKMK---------- 77 (179)
T ss_dssp -----------CCCTHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHTTC----------------------------
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhccchhhhHHHHHHH----------
Confidence 3456666666666667788889999999999998887653 44444444333211 11112211121
Q ss_pred HhhHHHHHHHHHhHHHHHHhcCCCCCCCCCCCCCcCCCCccccccccCCCCCCCcccccCcccccccCCCcccccccccc
Q 023064 167 QTNEATANTLRSNLEQVLAHVGGEGDDCAGGGATLAAAAEDDAESSCGSSDFGRSTIAGEGAQDKAVGGGRMLCRRCGEK 246 (288)
Q Consensus 167 ~~nEa~A~~Lra~L~q~l~q~~~~~~~~eg~g~~~~~~~~dDAeS~c~~~~~~r~~l~~~e~~~~~~~~~~~~C~iC~~~ 246 (288)
...+.... +|..++.+... ... . .. ......|.||++-
T Consensus 78 ~~~~~~i~----~~~~l~~~~~~-------------------~~~----~--~~-------------ip~~f~CPI~~el 115 (179)
T 2f42_A 78 SKHDKYLM----DMDELFSQVDE-------------------KRK----K--RE-------------IPDYLCGKISFEL 115 (179)
T ss_dssp CHHHHHHH----HHHHHHHHHHH-------------------GGG----C--CC-------------CCGGGBCTTTCSB
T ss_pred HHHHHHHH----HHHHHHHHHhh-------------------hcc----c--cC-------------CcHhhcccCcccc
Confidence 11222111 33333333211 000 0 00 1133579999999
Q ss_pred ccceEEeCCCCcccCcchhhhc----CCCCccccccccc
Q 023064 247 ESSVLLLPCRHLCLCTVCGSCL----IGSCPVCNFVVDA 281 (288)
Q Consensus 247 ~~~vlLlPCrHlclC~~C~~~l----~~~CPvCr~~i~~ 281 (288)
-.+=|++||||. .|..|-... ..+||+|+.+++.
T Consensus 116 m~DPV~~~~Ght-fer~~I~~~l~~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 116 MREPCITPSGIT-YDRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp CSSEEECTTSCE-EEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCeECCCCCE-ECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence 999999999997 799996654 2369999998764
No 55
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=96.88 E-value=0.0007 Score=51.38 Aligned_cols=45 Identities=7% Similarity=-0.078 Sum_probs=38.8
Q ss_pred CccccccccccccceEEeCCCCcccCcchhhhc---CCCCccccccccc
Q 023064 236 GRMLCRRCGEKESSVLLLPCRHLCLCTVCGSCL---IGSCPVCNFVVDA 281 (288)
Q Consensus 236 ~~~~C~iC~~~~~~vlLlPCrHlclC~~C~~~l---~~~CPvCr~~i~~ 281 (288)
....|.||++--.+=|.+||||. .|..|-... ...||+|+.++..
T Consensus 13 ~~~~CpI~~~~m~dPV~~~cGht-f~r~~I~~~l~~~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 13 DEFRDPLMDTLMTDPVRLPSGTV-MDRSIILRHLLNSPTDPFNRQMLTE 60 (85)
T ss_dssp TTTBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred hheECcccCchhcCCeECCCCCE-ECHHHHHHHHhcCCCCCCCcCCCCh
Confidence 45689999999999999999998 899997664 6799999998764
No 56
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=96.83 E-value=0.00025 Score=58.90 Aligned_cols=44 Identities=20% Similarity=0.548 Sum_probs=37.0
Q ss_pred CCccccccccccccceEEeCCCCcccCcchhhhc----CCCCccccccc
Q 023064 235 GGRMLCRRCGEKESSVLLLPCRHLCLCTVCGSCL----IGSCPVCNFVV 279 (288)
Q Consensus 235 ~~~~~C~iC~~~~~~vlLlPCrHlclC~~C~~~l----~~~CPvCr~~i 279 (288)
.+...|.||++--.+-+.+||||. +|..|...+ ...||+||..+
T Consensus 29 ~~~~~C~IC~~~~~~pv~~~CgH~-FC~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 29 EAKYLCSACRNVLRRPFQAQCGHR-YCSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp CGGGBCTTTCSBCSSEEECTTSCE-EEHHHHHHHGGGSCEECHHHHHTT
T ss_pred CcCcCCCCCChhhcCcEECCCCCc-cCHHHHHHHHhcCCCCCCCCCCcc
Confidence 355689999998888888999998 799998775 24899999975
No 57
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=96.81 E-value=0.0006 Score=57.30 Aligned_cols=45 Identities=24% Similarity=0.441 Sum_probs=38.6
Q ss_pred CccccccccccccceEEeCCCCcccCcchhhhc----CCCCccccccccc
Q 023064 236 GRMLCRRCGEKESSVLLLPCRHLCLCTVCGSCL----IGSCPVCNFVVDA 281 (288)
Q Consensus 236 ~~~~C~iC~~~~~~vlLlPCrHlclC~~C~~~l----~~~CPvCr~~i~~ 281 (288)
+...|.||++--.+-+.+||||. +|..|...+ ...||+||..+..
T Consensus 17 ~~~~C~IC~~~~~~pv~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 17 SKYECPICLMALREAVQTPCGHR-FCKACIIKSIRDAGHKCPVDNEILLE 65 (170)
T ss_dssp GGGBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCChhhcCcEECCCCCH-HHHHHHHHHHHhCCCCCCCCccCcch
Confidence 45689999999888889999998 799998775 3499999999875
No 58
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=96.64 E-value=0.00092 Score=59.14 Aligned_cols=45 Identities=9% Similarity=-0.193 Sum_probs=37.6
Q ss_pred CccccccccccccceEEeCCCCcccCcchhhhc----CCCCccccccccc
Q 023064 236 GRMLCRRCGEKESSVLLLPCRHLCLCTVCGSCL----IGSCPVCNFVVDA 281 (288)
Q Consensus 236 ~~~~C~iC~~~~~~vlLlPCrHlclC~~C~~~l----~~~CPvCr~~i~~ 281 (288)
....|.||++--.+=|.+||||. .|..|.... ...||+|+.+++.
T Consensus 207 ~~~~c~i~~~~~~dPv~~~~gh~-f~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 207 DYLCGKISFELMREPCITPSGIT-YDRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp STTBCTTTCSBCSSEEECSSCCE-EETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred cccCCcCcCCHhcCCeECCCCCE-ECHHHHHHHHHHCCCCCcCCCCCCch
Confidence 44589999999999999999998 799997654 3349999998864
No 59
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=96.54 E-value=0.001 Score=52.90 Aligned_cols=30 Identities=27% Similarity=0.286 Sum_probs=25.5
Q ss_pred ceEEeCCCCcccCcchhhhc---CCCCccccccc
Q 023064 249 SVLLLPCRHLCLCTVCGSCL---IGSCPVCNFVV 279 (288)
Q Consensus 249 ~vlLlPCrHlclC~~C~~~l---~~~CPvCr~~i 279 (288)
.++++||+|. ++..|.... ..+||+||...
T Consensus 67 ~~~~~~C~H~-FH~~Ci~~Wl~~~~~CP~Cr~~~ 99 (106)
T 3dpl_R 67 TVAWGVCNHA-FHFHCISRWLKTRQVCPLDNREW 99 (106)
T ss_dssp CEEEETTSCE-EEHHHHHHHHTTCSBCSSSCSBC
T ss_pred eEeecccCcE-ECHHHHHHHHHcCCcCcCCCCcc
Confidence 3788999998 899998765 68899999985
No 60
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=96.53 E-value=0.0015 Score=51.19 Aligned_cols=46 Identities=7% Similarity=-0.092 Sum_probs=39.4
Q ss_pred CCccccccccccccceEEeCCCCcccCcchhhhc---CCCCccccccccc
Q 023064 235 GGRMLCRRCGEKESSVLLLPCRHLCLCTVCGSCL---IGSCPVCNFVVDA 281 (288)
Q Consensus 235 ~~~~~C~iC~~~~~~vlLlPCrHlclC~~C~~~l---~~~CPvCr~~i~~ 281 (288)
.....|.||++--.+=|++||||. .|..|-... ...||+|+.+++.
T Consensus 27 p~~~~CpI~~~~m~dPV~~~cGht-f~r~~I~~~l~~~~~cP~~~~~l~~ 75 (100)
T 2kre_A 27 PDEFRDPLMDTLMTDPVRLPSGTI-MDRSIILRHLLNSPTDPFNRQTLTE 75 (100)
T ss_dssp STTTBCTTTCSBCSSEEEETTTEE-EEHHHHHHHTTSCSBCSSSCCBCCT
T ss_pred cHhhCCcCccCcccCCeECCCCCE-EchHHHHHHHHcCCCCCCCCCCCCh
Confidence 345689999999999999999998 899997664 5789999998764
No 61
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=96.42 E-value=0.0021 Score=50.16 Aligned_cols=45 Identities=9% Similarity=-0.063 Sum_probs=38.4
Q ss_pred CccccccccccccceEEeCCC-CcccCcchhhhc---CCCCccccccccc
Q 023064 236 GRMLCRRCGEKESSVLLLPCR-HLCLCTVCGSCL---IGSCPVCNFVVDA 281 (288)
Q Consensus 236 ~~~~C~iC~~~~~~vlLlPCr-HlclC~~C~~~l---~~~CPvCr~~i~~ 281 (288)
....|.||++--.+=|++||| |. +|..|.... ...||+|+.+++.
T Consensus 21 ~~~~CpI~~~~m~dPV~~~cG~ht-f~r~cI~~~l~~~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 21 DEFLDPIMSTLMCDPVVLPSSRVT-VDRSTIARHLLSDQTDPFNRSPLTM 69 (98)
T ss_dssp TTTBCTTTCSBCSSEEECTTTCCE-EEHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred HhcCCcCccccccCCeECCCCCeE-ECHHHHHHHHHhCCCCCCCCCCCCh
Confidence 456899999999999999999 87 799997664 5689999998764
No 62
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=95.77 E-value=0.0016 Score=52.97 Aligned_cols=41 Identities=24% Similarity=0.294 Sum_probs=0.0
Q ss_pred ccccccccccc------------------ceEEeCCCCcccCcchhhhc---CCCCccccccc
Q 023064 238 MLCRRCGEKES------------------SVLLLPCRHLCLCTVCGSCL---IGSCPVCNFVV 279 (288)
Q Consensus 238 ~~C~iC~~~~~------------------~vlLlPCrHlclC~~C~~~l---~~~CPvCr~~i 279 (288)
-.|.||++.-. .++++||+|. ++..|.... ..+||+||...
T Consensus 49 d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~-FH~~CI~~Wl~~~~~CP~Cr~~~ 110 (117)
T 4a0k_B 49 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHA-FHFHCISRWLKTRQVCPLDNREW 110 (117)
T ss_dssp ---------------------------------------------------------------
T ss_pred CcCeECChhhcCcChhhhcccccccccccccccCCcCce-EcHHHHHHHHHcCCcCCCCCCee
Confidence 36888886532 3556799999 899998764 67899999974
No 63
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.72 E-value=0.0068 Score=45.79 Aligned_cols=43 Identities=26% Similarity=0.637 Sum_probs=32.8
Q ss_pred cccccccccc--cceEEeCCC-----CcccCcchhhhc-----CCCCccccccccc
Q 023064 238 MLCRRCGEKE--SSVLLLPCR-----HLCLCTVCGSCL-----IGSCPVCNFVVDA 281 (288)
Q Consensus 238 ~~C~iC~~~~--~~vlLlPCr-----HlclC~~C~~~l-----~~~CPvCr~~i~~ 281 (288)
..|.||++.. .+.+++||+ |. +-..|.... ...||+||..+..
T Consensus 16 ~~C~IC~~~~~~~~~l~~pC~C~Gs~h~-fH~~Cl~~Wl~~~~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 16 DICRICHCEGDDESPLITPCHCTGSLHF-VHQACLQQWIKSSDTRCCELCKYEFIM 70 (80)
T ss_dssp CCCSSSCCCCCSSSCEECSSSCCSSSCC-EETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred CCCeEcCccccCCCeeEeccccCCcCCe-eCHHHHHHHHhhCCCCCCCCCCCeeec
Confidence 4799999642 345679997 88 688897765 2589999998754
No 64
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=95.21 E-value=0.0092 Score=47.62 Aligned_cols=45 Identities=27% Similarity=0.654 Sum_probs=31.2
Q ss_pred cccccccc-ccceEEeCCCCcccCcchhhhc----CCCCccccccccceEE
Q 023064 239 LCRRCGEK-ESSVLLLPCRHLCLCTVCGSCL----IGSCPVCNFVVDASLH 284 (288)
Q Consensus 239 ~C~iC~~~-~~~vlLlPCrHlclC~~C~~~l----~~~CPvCr~~i~~~v~ 284 (288)
.|.+|.-- ..-.-++||.| .+|.+|+..+ ...||.|+.+|...=.
T Consensus 3 fC~~C~~Pi~iygRmIPCkH-vFCydCa~~~~~~~~k~Cp~C~~~V~rVe~ 52 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKH-VFCYDCAILHEKKGDKMCPGCSDPVQRIEQ 52 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCC-EEEHHHHHHHHHTTCCBCTTTCCBCSEEEE
T ss_pred ecCccCCCeEEEeeeccccc-cHHHHHHHHHHhccCCCCcCcCCeeeeeEE
Confidence 35555432 12234689999 5999999543 6899999999876543
No 65
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=94.90 E-value=0.0063 Score=46.33 Aligned_cols=41 Identities=24% Similarity=0.553 Sum_probs=29.6
Q ss_pred ccccccccccccc--e-EEeCCCCcccCcchhhhc-----------CCCCcc--cccc
Q 023064 237 RMLCRRCGEKESS--V-LLLPCRHLCLCTVCGSCL-----------IGSCPV--CNFV 278 (288)
Q Consensus 237 ~~~C~iC~~~~~~--v-lLlPCrHlclC~~C~~~l-----------~~~CPv--Cr~~ 278 (288)
...|.||++.-.. + .|.||+|. .|..|-... .-.||. |+..
T Consensus 5 ~~~C~IC~~~~~~~~~~~l~~CgH~-FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 5 SSGCKLCLGEYPVEQMTTIAQCQCI-FCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp BCCCSSSCCCCBGGGEEEETTTTEE-EEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CcCCcccCcccccccceEcCCCCCc-ccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 4579999986332 2 33489998 899996543 247999 9987
No 66
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.74 E-value=0.013 Score=44.97 Aligned_cols=42 Identities=17% Similarity=0.275 Sum_probs=34.3
Q ss_pred CccccccccccccceEEeC-CCCcccCcchhhhc---C------CCCcc--cccc
Q 023064 236 GRMLCRRCGEKESSVLLLP-CRHLCLCTVCGSCL---I------GSCPV--CNFV 278 (288)
Q Consensus 236 ~~~~C~iC~~~~~~vlLlP-CrHlclC~~C~~~l---~------~~CPv--Cr~~ 278 (288)
....|.||++--.+=|.+| |||. +|..|-... . ..||+ |+..
T Consensus 6 ~~~~CPI~~~~~~dPV~~~~cGh~-f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 6 SGFTCPITKEEMKKPVKNKVCGHT-YEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SCCBCTTTCSBCSSEEEESSSCCE-EEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred cEeECcCcCchhcCCEEcCCCCCe-ecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 4468999999999999997 9998 799997654 1 38999 9854
No 67
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=94.55 E-value=0.91 Score=39.78 Aligned_cols=75 Identities=20% Similarity=0.180 Sum_probs=52.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH----H
Q 023064 98 AQHTEKVILELEEQRKRQSRMLISAIQEGVANKLKEKDEEIHRMRKLNWVLQERVKSLFVENQIWRDLAQTNEAT----A 173 (288)
Q Consensus 98 ~~q~Erlr~~L~e~r~r~~r~ll~avE~~~~~rLReKe~Eie~a~r~n~eLEErlrql~~E~qaWq~~A~~nEa~----A 173 (288)
+.+.+.|+..|.|-. -.+ .-+| .+.|.||+.+.+++.+|..++.++..|.+.|+.+......- .
T Consensus 23 ~q~~~~le~El~EFq-esS----rELE-------~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~ 90 (189)
T 2v71_A 23 KQSFQEARDELVEFQ-EGS----RELE-------AELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQV 90 (189)
T ss_dssp HHHHHHHHHHHHHHH-HHH----HHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HHH----HHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666654 112 2223 56778999999999999999999999999999988776554 5
Q ss_pred HHHHHhHHHHH
Q 023064 174 NTLRSNLEQVL 184 (288)
Q Consensus 174 ~~Lra~L~q~l 184 (288)
+.|+..+.++.
T Consensus 91 ~~Lq~el~~l~ 101 (189)
T 2v71_A 91 SVLEDDLSQTR 101 (189)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555554443
No 68
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=92.50 E-value=0.057 Score=49.75 Aligned_cols=47 Identities=21% Similarity=0.339 Sum_probs=37.3
Q ss_pred cCCCccccccccccccceEEe-CCCCcccCcchhhhc-----CCCCcc--cccccc
Q 023064 233 VGGGRMLCRRCGEKESSVLLL-PCRHLCLCTVCGSCL-----IGSCPV--CNFVVD 280 (288)
Q Consensus 233 ~~~~~~~C~iC~~~~~~vlLl-PCrHlclC~~C~~~l-----~~~CPv--Cr~~i~ 280 (288)
.......|.||++--.+=|.. .|||. +|..|.... ...||+ |+..+.
T Consensus 177 ~~~~el~CPIcl~~f~DPVts~~CGHs-FcR~cI~~~~~~~~~~~CPvtGCr~~l~ 231 (267)
T 3htk_C 177 GGKIELTCPITCKPYEAPLISRKCNHV-FDRDGIQNYLQGYTTRDCPQAACSQVVS 231 (267)
T ss_dssp SSBCCSBCTTTSSBCSSEEEESSSCCE-EEHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred CCceeeECcCccCcccCCeeeCCCCCc-ccHHHHHHHHHhCCCCCCCcccccCcCc
Confidence 345667899999988887764 99996 899998765 247999 998764
No 69
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=92.39 E-value=0.41 Score=32.29 Aligned_cols=33 Identities=27% Similarity=0.415 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023064 134 KDEEIHRMRKLNWVLQERVKSLFVENQIWRDLA 166 (288)
Q Consensus 134 Ke~Eie~a~r~n~eLEErlrql~~E~qaWq~~A 166 (288)
.|.....+..+|.|||+|+.-|..|++.-+.+-
T Consensus 8 LE~r~k~le~~naeLEervstLq~EN~mLRqvl 40 (42)
T 2oqq_A 8 LENRVKDLENKNSELEERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 344445566789999999999999999887764
No 70
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=91.32 E-value=0.081 Score=37.70 Aligned_cols=43 Identities=21% Similarity=0.464 Sum_probs=29.2
Q ss_pred cccccccccccceEEeCCCCc----ccCcchhhhc-----CCCCcccccccc
Q 023064 238 MLCRRCGEKESSVLLLPCRHL----CLCTVCGSCL-----IGSCPVCNFVVD 280 (288)
Q Consensus 238 ~~C~iC~~~~~~vlLlPCrHl----clC~~C~~~l-----~~~CPvCr~~i~ 280 (288)
..|.||++....-+++||.+. .+=..|.... ...||+|+..+.
T Consensus 7 ~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 7 PVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 479999987666678998642 1223354443 578999998764
No 71
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=88.82 E-value=14 Score=35.79 Aligned_cols=65 Identities=15% Similarity=0.059 Sum_probs=41.5
Q ss_pred HHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHH
Q 023064 119 LISAIQEGVANKLKEKDEEIHRMRKLNWVLQERVKSLFVENQIWRDLAQTNEATANTLRSNLEQV 183 (288)
Q Consensus 119 ll~avE~~~~~rLReKe~Eie~a~r~n~eLEErlrql~~E~qaWq~~A~~nEa~A~~Lra~L~q~ 183 (288)
.+..+...+..+...++.++++..+...++.+..+++..|...|+..-++.+.....|+.+++..
T Consensus 506 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~ 570 (597)
T 3oja_B 506 NLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLK 570 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 34444445555666666666666666667777777777777788777666666665555544444
No 72
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=88.73 E-value=8.8 Score=37.24 Aligned_cols=38 Identities=13% Similarity=-0.003 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHhc
Q 023064 150 ERVKSLFVENQIWRDLAQTNEATANTLRSNLEQVLAHV 187 (288)
Q Consensus 150 Erlrql~~E~qaWq~~A~~nEa~A~~Lra~L~q~l~q~ 187 (288)
+....+....+.=+....+-..-...++.++.|+...-
T Consensus 544 ~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~ 581 (597)
T 3oja_B 544 QENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKK 581 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333333333333333333445666777776653
No 73
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=86.19 E-value=3.7 Score=31.12 Aligned_cols=46 Identities=26% Similarity=0.263 Sum_probs=32.9
Q ss_pred HHHHHHHHhHHHHHHhhH----HHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Q 023064 118 MLISAIQEGVANKLKEKD----EEIHRMRKLNWVLQ-------ERVKSLFVENQIWR 163 (288)
Q Consensus 118 ~ll~avE~~~~~rLReKe----~Eie~a~r~n~eLE-------Erlrql~~E~qaWq 163 (288)
+|++|||..+-+||||+= +||+.+++-..||. +-+.++..|-..|.
T Consensus 3 SllSAVeDKLRrrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~ 59 (78)
T 3iv1_A 3 SLISAVSDKLRWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVD 59 (78)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 578899998888888764 78888877766654 45566666665553
No 74
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=86.18 E-value=2 Score=41.24 Aligned_cols=57 Identities=18% Similarity=0.264 Sum_probs=50.7
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHH
Q 023064 129 NKLKEKDEEIHRMRKLNWVLQERVKSLFVENQIWRDLAQTNEATANTLRSNLEQVLA 185 (288)
Q Consensus 129 ~rLReKe~Eie~a~r~n~eLEErlrql~~E~qaWq~~A~~nEa~A~~Lra~L~q~l~ 185 (288)
-++.++++||+.+.++..+|++.++++..|.+.+.......|..-..|+++++.+.-
T Consensus 3 ~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkg 59 (403)
T 4etp_A 3 SKIAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRG 59 (403)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 467889999999999999999999999999999999999999988889998887754
No 75
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=85.56 E-value=13 Score=29.90 Aligned_cols=86 Identities=10% Similarity=0.195 Sum_probs=65.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 023064 97 IAQHTEKVILELEEQRKRQSRMLISAIQEGVANKLKEKDEEIHRMRKLNWVLQERVKSLFVENQIWRDLAQTNEATANTL 176 (288)
Q Consensus 97 i~~q~Erlr~~L~e~r~r~~r~ll~avE~~~~~rLReKe~Eie~a~r~n~eLEErlrql~~E~qaWq~~A~~nEa~A~~L 176 (288)
|+..+++|+..+++.+..+..+-- -.....-..+.||...+..+..|-.++|.|.+.|+..-+.++...+....+
T Consensus 8 L~~~~~~L~~E~e~~k~K~~~~~~-----e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~ 82 (111)
T 2v66_B 8 LQADNQRLKYEVEALKEKLEHQYA-----QSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDF 82 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHH
Confidence 566777888888777766554321 111122333459999999999999999999999999999999988888888
Q ss_pred HHhHHHHHHhc
Q 023064 177 RSNLEQVLAHV 187 (288)
Q Consensus 177 ra~L~q~l~q~ 187 (288)
.+.+.+++...
T Consensus 83 E~k~n~aiErn 93 (111)
T 2v66_B 83 EQRLNQAIERN 93 (111)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999888765
No 76
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=85.21 E-value=0.34 Score=34.36 Aligned_cols=43 Identities=21% Similarity=0.267 Sum_probs=36.0
Q ss_pred cccccccccccceEEe-CCCCcccCcchhhhc---CCCCccccccccc
Q 023064 238 MLCRRCGEKESSVLLL-PCRHLCLCTVCGSCL---IGSCPVCNFVVDA 281 (288)
Q Consensus 238 ~~C~iC~~~~~~vlLl-PCrHlclC~~C~~~l---~~~CPvCr~~i~~ 281 (288)
..|.||++--.+=++. ||||. .+..|-... ..+||+++.+.+.
T Consensus 4 ~~CpIs~~~m~dPV~~~~sG~~-yer~~I~~~l~~~~~cP~t~~~L~~ 50 (61)
T 2bay_A 4 MLCAISGKVPRRPVLSPKSRTI-FEKSLLEQYVKDTGNDPITNEPLSI 50 (61)
T ss_dssp CCCTTTCSCCSSEEEETTTTEE-EEHHHHHHHHHHHSBCTTTCCBCCG
T ss_pred EEecCCCCCCCCCEEeCCCCcE-EcHHHHHHHHHhCCCCcCCcCCCCh
Confidence 4799999998888998 99998 788887765 5679999988753
No 77
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=84.95 E-value=2.8 Score=30.10 Aligned_cols=35 Identities=34% Similarity=0.335 Sum_probs=29.5
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023064 132 KEKDEEIHRMRKLNWVLQERVKSLFVENQIWRDLA 166 (288)
Q Consensus 132 ReKe~Eie~a~r~n~eLEErlrql~~E~qaWq~~A 166 (288)
.+.+.+++.+...|.+|+.++.+|..|.+.|+.+-
T Consensus 26 ~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 26 EALTGECKELEKKNEALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34457888889999999999999999999997764
No 78
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=84.49 E-value=7.6 Score=36.82 Aligned_cols=40 Identities=8% Similarity=0.193 Sum_probs=24.2
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHH------HHHHHHHHHhHHH
Q 023064 90 QSEIDRYIAQHTEKVILELEEQRKRQS------RMLISAIQEGVAN 129 (288)
Q Consensus 90 ~~EiD~~i~~q~Erlr~~L~e~r~r~~------r~ll~avE~~~~~ 129 (288)
...+.++|+.+.+++++.+.+.|.+-. ..|..++|..+++
T Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (471)
T 3mq9_A 395 ARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQ 440 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHH
Confidence 345667777777777777777776542 3444555544443
No 79
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=81.34 E-value=0.53 Score=37.17 Aligned_cols=50 Identities=24% Similarity=0.620 Sum_probs=39.5
Q ss_pred CCCccccccccccccceEEeCCCCcccCcchhhhc---CCCCccccccccceEEE
Q 023064 234 GGGRMLCRRCGEKESSVLLLPCRHLCLCTVCGSCL---IGSCPVCNFVVDASLHV 285 (288)
Q Consensus 234 ~~~~~~C~iC~~~~~~vlLlPCrHlclC~~C~~~l---~~~CPvCr~~i~~~v~V 285 (288)
..+...|+.|+-...+.|- |.---+|..|-..| ...||+|..+....|+|
T Consensus 25 ~~G~~nCKsCWf~~k~LV~--C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtkl~~ 77 (99)
T 2ko5_A 25 HLGPQFCKSCWFENKGLVE--CNNHYLCLNCLTLLLSVSNRCPICKMPLPTKLRP 77 (99)
T ss_dssp CSCCCCCCSSCSCCSSEEE--CSSCEEEHHHHHHTCSSSSEETTTTEECCCCSCT
T ss_pred ccCcccChhhccccCCeee--ecchhhHHHHHHHHHhhccCCcccCCcCCcceec
Confidence 3456689999998886553 65445999999887 79999999998877665
No 80
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=81.25 E-value=4.9 Score=32.33 Aligned_cols=41 Identities=22% Similarity=0.118 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHH
Q 023064 142 RKLNWVLQERVKSLFVENQIWRDLAQTNEATANTLRSNLEQ 182 (288)
Q Consensus 142 ~r~n~eLEErlrql~~E~qaWq~~A~~nEa~A~~Lra~L~q 182 (288)
-+++.+|..+..+|..|...|+.+.......+++..+.|+.
T Consensus 2 Ek~~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~ 42 (111)
T 2v66_B 2 EQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLED 42 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36889999999999999999999998887765554444443
No 81
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=80.39 E-value=15 Score=29.08 Aligned_cols=30 Identities=30% Similarity=0.554 Sum_probs=23.8
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023064 128 ANKLKEKDEEIHRMRKLNWVLQERVKSLFVENQIWRD 164 (288)
Q Consensus 128 ~~rLReKe~Eie~a~r~n~eLEErlrql~~E~qaWq~ 164 (288)
..|+|+.+.||++.+..|. .|..|+..|..
T Consensus 64 ~~~v~eLe~everL~~ENq-------~L~~e~~~~~~ 93 (104)
T 3s9g_A 64 DARVRELELELDRLRAENL-------QLLTENELHRQ 93 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHH-------HHHHHHHhhcc
Confidence 5788899999999888885 45678888864
No 82
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=80.30 E-value=2.7 Score=27.17 Aligned_cols=25 Identities=20% Similarity=0.526 Sum_probs=20.4
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHH
Q 023064 132 KEKDEEIHRMRKLNWVLQERVKSLF 156 (288)
Q Consensus 132 ReKe~Eie~a~r~n~eLEErlrql~ 156 (288)
-+-..+|+.++++|+-||++++.|+
T Consensus 10 ~a~qqDIddlkrQN~~Le~Qir~le 34 (34)
T 1a93_B 10 DTHQQDIDDLKRQNALLEQQVRALX 34 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HhhHhhHHHHHHHHHHHHHHHHhcC
Confidence 3444799999999999999998764
No 83
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=79.32 E-value=29 Score=32.93 Aligned_cols=56 Identities=13% Similarity=0.114 Sum_probs=44.0
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHh
Q 023064 131 LKEKDEEIHRMRKLNWVLQERVKSLFVENQIWRDLAQTNEATANTLRSNLEQVLAH 186 (288)
Q Consensus 131 LReKe~Eie~a~r~n~eLEErlrql~~E~qaWq~~A~~nEa~A~~Lra~L~q~l~q 186 (288)
..+.+.|.+++++......+++.++..|++.-+.+..+........+++++.+..+
T Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (487)
T 3oja_A 423 YVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELVVR 478 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHHH
Confidence 44555677777777778888888999999999999988888888888888776654
No 84
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=78.05 E-value=26 Score=28.43 Aligned_cols=82 Identities=15% Similarity=0.179 Sum_probs=51.3
Q ss_pred hHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHH------HHHHHHHHHHHHHhHHH---HHHhhHHHHHHHHHHHHHHH
Q 023064 79 DQDIIFRLQQQQSEIDRYIAQHTEKVILELEEQR------KRQSRMLISAIQEGVAN---KLKEKDEEIHRMRKLNWVLQ 149 (288)
Q Consensus 79 ~~~l~~~l~~Q~~EiD~~i~~q~Erlr~~L~e~r------~r~~r~ll~avE~~~~~---rLReKe~Eie~a~r~n~eLE 149 (288)
-|+|.++ +.=..+-++|+.|.-+-...|.+.- .+-+..|..+++...++ ++.+.+.||...+.+..+.+
T Consensus 14 ~dGLrAq--~ECrN~T~lLq~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ 91 (121)
T 3mq7_A 14 RDGLRAV--MEARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDAS 91 (121)
T ss_dssp HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH--HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566554 4556788888888777666666554 23344455555543333 46666677777777777777
Q ss_pred HHHHHHHHHHHHH
Q 023064 150 ERVKSLFVENQIW 162 (288)
Q Consensus 150 Erlrql~~E~qaW 162 (288)
+.+.++..+++.-
T Consensus 92 ae~erlr~~~~~~ 104 (121)
T 3mq7_A 92 AEVERLRRENQVL 104 (121)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHhhchhh
Confidence 7777777666643
No 85
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=77.78 E-value=29 Score=29.31 Aligned_cols=30 Identities=23% Similarity=0.230 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH
Q 023064 136 EEIHRMRKLNWVLQERVKSLFVEN----QIWRDL 165 (288)
Q Consensus 136 ~Eie~a~r~n~eLEErlrql~~E~----qaWq~~ 165 (288)
.|+...+-++..+|++++.+..|| +-|...
T Consensus 103 DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~r 136 (152)
T 3a7p_A 103 AALISGTIENNVLQQKLSDLKKEHSQLVARWLKK 136 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999999999 467554
No 86
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=77.19 E-value=1.5 Score=33.02 Aligned_cols=31 Identities=29% Similarity=0.332 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023064 136 EEIHRMRKLNWVLQERVKSLFVENQIWRDLA 166 (288)
Q Consensus 136 ~Eie~a~r~n~eLEErlrql~~E~qaWq~~A 166 (288)
+|+|-.+-++.||++++.+|+.||...+..|
T Consensus 15 EEVevLKe~I~EL~e~~~qLE~EN~~Lk~~a 45 (78)
T 1dip_A 15 EEVEILKEQIRELVEKNSQLERENTLLKTLA 45 (78)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3888899999999999999999998776554
No 87
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=75.91 E-value=15 Score=32.40 Aligned_cols=63 Identities=19% Similarity=0.228 Sum_probs=46.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 023064 100 HTEKVILELEEQRKRQSRMLISAIQEGVANKLKEKDEEIHRMRKLNWVLQERVKSLFVENQIWRDLAQTNEATANTLR 177 (288)
Q Consensus 100 q~Erlr~~L~e~r~r~~r~ll~avE~~~~~rLReKe~Eie~a~r~n~eLEErlrql~~E~qaWq~~A~~nEa~A~~Lr 177 (288)
-.++-|..|+|+||. +|-.++ +|.+.+..++..|+|.+..+..|++.-+.+|..-+.+|..|.
T Consensus 94 Pse~YWk~lAE~RR~---AL~eaL------------eEN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~q~la~vi~ 156 (209)
T 2wvr_A 94 PSSQYWKEVAEKRRK---ALYEAL------------KENEKLHKEIEQKDNEIARLKKENKELAEVAEHVQYMAELIE 156 (209)
T ss_dssp CCTTHHHHHHHHHHH---HHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHH---HHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367789999999964 333333 366777777778888888888888888888887777776444
No 88
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=73.14 E-value=3 Score=27.19 Aligned_cols=21 Identities=43% Similarity=0.618 Sum_probs=17.9
Q ss_pred HHHhhHHHHHHHHHHHHHHHH
Q 023064 130 KLKEKDEEIHRMRKLNWVLQE 150 (288)
Q Consensus 130 rLReKe~Eie~a~r~n~eLEE 150 (288)
-+-+|++||.+.+.+|.+|.|
T Consensus 15 ~ie~KdeeIa~Lk~eN~eL~E 35 (37)
T 1t6f_A 15 EIEQKDNEIARLKKENKELAE 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhHHHHh
Confidence 456899999999999999875
No 89
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=72.57 E-value=30 Score=28.44 Aligned_cols=31 Identities=19% Similarity=0.124 Sum_probs=24.2
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023064 129 NKLKEKDEEIHRMRKLNWVLQERVKSLFVEN 159 (288)
Q Consensus 129 ~rLReKe~Eie~a~r~n~eLEErlrql~~E~ 159 (288)
-++.+...|++...+++.+|++++.++.+|.
T Consensus 103 ~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~ 133 (138)
T 3hnw_A 103 IKAESSAKEIKELKSEINKYQKNIVKLETEL 133 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667788888888888888888887664
No 90
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=71.40 E-value=25 Score=26.73 Aligned_cols=21 Identities=14% Similarity=0.202 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 023064 145 NWVLQERVKSLFVENQIWRDL 165 (288)
Q Consensus 145 n~eLEErlrql~~E~qaWq~~ 165 (288)
...|+....|++.|-..|+..
T Consensus 50 ~~~L~~en~qLk~E~~~wq~R 70 (81)
T 2jee_A 50 REELERENNHLKEQQNGWQER 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 334777777888888888765
No 91
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=70.49 E-value=18 Score=25.44 Aligned_cols=21 Identities=29% Similarity=0.215 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 023064 145 NWVLQERVKSLFVENQIWRDL 165 (288)
Q Consensus 145 n~eLEErlrql~~E~qaWq~~ 165 (288)
..+||.++..|..|+..+...
T Consensus 24 ~~~Le~~v~~L~~~n~~L~~~ 44 (62)
T 1jnm_A 24 IARLEEKVKTLKAQNSELAST 44 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445555555566555555443
No 92
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=69.58 E-value=31 Score=26.33 Aligned_cols=58 Identities=22% Similarity=0.239 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 023064 101 TEKVILELEEQRKRQSRMLISAIQEGVANKLKEKDEEIHRMRKLNWVLQERVKSLFVENQIWRDLAQTNEATA 173 (288)
Q Consensus 101 ~Erlr~~L~e~r~r~~r~ll~avE~~~~~rLReKe~Eie~a~r~n~eLEErlrql~~E~qaWq~~A~~nEa~A 173 (288)
.++-|..|+|+||.- |-.+++ |.+++.+.+-.+++.+..+..|+..-+.+|...+.+|
T Consensus 18 se~YWk~lAE~Rr~A---L~eaL~------------EN~~Lh~~ie~~~eEi~~Lk~en~~L~elA~~~q~la 75 (83)
T 1wlq_A 18 SSQYWKEVAEQRRKA---LYEALK------------ENEKLHKEIEQKDSEIARLRKENKDLAEVAEHVQYMA 75 (83)
T ss_dssp TCTHHHHHHHHHHHH---HHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHH---HHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356678888888643 333333 3333333444444444444445544455554444444
No 93
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=68.57 E-value=8.4 Score=24.02 Aligned_cols=27 Identities=22% Similarity=0.306 Sum_probs=21.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023064 133 EKDEEIHRMRKLNWVLQERVKSLFVEN 159 (288)
Q Consensus 133 eKe~Eie~a~r~n~eLEErlrql~~E~ 159 (288)
+.|.|+.++...|-+||..+.|+..||
T Consensus 5 qlekevaqaeaenyqleqevaqlehec 31 (33)
T 1fmh_A 5 QLEKEVAQAEAENYQLEQEVAQLEHEC 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 456678888888999999999988876
No 94
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=67.55 E-value=13 Score=27.63 Aligned_cols=33 Identities=21% Similarity=0.176 Sum_probs=21.9
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023064 131 LKEKDEEIHRMRKLNWVLQERVKSLFVENQIWR 163 (288)
Q Consensus 131 LReKe~Eie~a~r~n~eLEErlrql~~E~qaWq 163 (288)
||+||+-|+...++..+.++-++.|..|.+-.|
T Consensus 35 Lr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 35 LRQRDALIDELELELDQKDELIQMLQNELDKYR 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 677777777777777777777766666655443
No 95
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=67.31 E-value=39 Score=25.77 Aligned_cols=29 Identities=24% Similarity=0.244 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023064 136 EEIHRMRKLNWVLQERVKSLFVENQIWRD 164 (288)
Q Consensus 136 ~Eie~a~r~n~eLEErlrql~~E~qaWq~ 164 (288)
.+++.+...|..|..+|.+|..|.+.++.
T Consensus 43 ~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ 71 (87)
T 1hjb_A 43 HKVLELTAENERLQKKVEQLSRELSTLRN 71 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666666655555443
No 96
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=66.57 E-value=32 Score=26.01 Aligned_cols=48 Identities=35% Similarity=0.484 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--hHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 023064 102 EKVILELEEQRKRQSRMLISAIQE--GVANKLKEKDEEIHRMRKLNWVLQERV 152 (288)
Q Consensus 102 Erlr~~L~e~r~r~~r~ll~avE~--~~~~rLReKe~Eie~a~r~n~eLEErl 152 (288)
++-|..|+|+||. +|-.+++. ..-+.+-+|++||.+++..|..|.+-+
T Consensus 15 e~YWk~lAE~RR~---AL~eaL~EN~~Lh~~ie~~~eEi~~LkeEN~~L~el~ 64 (79)
T 2zxx_A 15 SQYWKEVAEQRRK---ALYEALKENEKLHKEIEQKDSEIARLRKENKDLAEVA 64 (79)
T ss_dssp CTHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778887763 34444442 222344555566655555555554433
No 97
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=65.28 E-value=72 Score=28.07 Aligned_cols=52 Identities=10% Similarity=-0.025 Sum_probs=30.6
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHH
Q 023064 130 KLKEKDEEIHRMRKLNWVLQERVKSLFVENQIWRDLAQTNEATANTLRSNLE 181 (288)
Q Consensus 130 rLReKe~Eie~a~r~n~eLEErlrql~~E~qaWq~~A~~nEa~A~~Lra~L~ 181 (288)
-+.+...||+.+.+++..||+.+..+..+-...+......++....++..|.
T Consensus 91 E~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~ 142 (256)
T 3na7_A 91 ELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLAL 142 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556777777777777777766666666655555444444444444443
No 98
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=64.74 E-value=39 Score=24.99 Aligned_cols=29 Identities=28% Similarity=0.478 Sum_probs=21.5
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 023064 128 ANKLKEKDEEIHRMRKLNWVLQERVKSLF 156 (288)
Q Consensus 128 ~~rLReKe~Eie~a~r~n~eLEErlrql~ 156 (288)
..+|++|.+||++.+...-.|-.++-.-.
T Consensus 9 ~~kl~~Kq~EI~rLnvlvgslR~KLiKYt 37 (74)
T 2q6q_A 9 NFKLREKQNEIFELKKIAETLRSKLEKYV 37 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36789999999999887777666654443
No 99
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=64.32 E-value=6.9 Score=25.46 Aligned_cols=28 Identities=21% Similarity=0.411 Sum_probs=22.2
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 023064 130 KLKEKDEEIHRMRKLNWVLQERVKSLFV 157 (288)
Q Consensus 130 rLReKe~Eie~a~r~n~eLEErlrql~~ 157 (288)
|+.+.|..++.+-.++++||..+.+|..
T Consensus 2 RMnQLE~kVEeLl~~~~~Le~EV~RL~~ 29 (36)
T 1kd8_A 2 EVKQLEAEVEEIESEVWHLENEVARLEK 29 (36)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 5677888888899999999987666653
No 100
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=64.07 E-value=93 Score=29.90 Aligned_cols=69 Identities=10% Similarity=0.124 Sum_probs=48.9
Q ss_pred HHHHhhhHHHHHHHHHhHHHHHHHHHH-------------HHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHH
Q 023064 84 FRLQQQQSEIDRYIAQHTEKVILELEE-------------QRKRQSRMLISAIQEGVANKLKEKDEEIHRMRKLNWVLQE 150 (288)
Q Consensus 84 ~~l~~Q~~EiD~~i~~q~Erlr~~L~e-------------~r~r~~r~ll~avE~~~~~rLReKe~Eie~a~r~n~eLEE 150 (288)
..+++-..++++|++.=.+.||.-++. --++|..-|-..|...+. .||....-|+....+.+.||.
T Consensus 77 ~~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~~-~ir~Lq~~l~~q~~kiqRLE~ 155 (390)
T 1deq_A 77 FNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQVQ-RINLLQKNVRDQLVDMKRLEV 155 (390)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHH
Confidence 345666677777777776666665543 344566667777777776 888888888888888888888
Q ss_pred HHH
Q 023064 151 RVK 153 (288)
Q Consensus 151 rlr 153 (288)
.|+
T Consensus 156 ~Id 158 (390)
T 1deq_A 156 DID 158 (390)
T ss_pred HHH
Confidence 774
No 101
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=63.58 E-value=39 Score=26.11 Aligned_cols=86 Identities=16% Similarity=0.221 Sum_probs=53.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHhhH
Q 023064 98 AQHTEKVILELEEQRKRQSRMLISAIQEGVANKL-KEKDEEIHRMRKLNWVLQERVKSLFVENQIW------RDLAQTNE 170 (288)
Q Consensus 98 ~~q~Erlr~~L~e~r~r~~r~ll~avE~~~~~rL-ReKe~Eie~a~r~n~eLEErlrql~~E~qaW------q~~A~~nE 170 (288)
+...++|+.-+.+..+.|.+.|- +... ...+ ++.|.-+..+.+....+-.+|+.+..++..- -...+-..
T Consensus 18 ~~~i~~i~~~v~~l~~~~~~~L~-~~~~--~~~~~~~l~~l~~~i~~~a~~ik~~Lk~l~~~~~~~~~~~~~s~~~Rir~ 94 (127)
T 1ez3_A 18 RGFIDKIAENVEEVKRKHSAILA-SPNP--DEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLNRSSADLRIRK 94 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-CSSC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-cCCc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHH
Confidence 34455677777777788876654 2221 1122 2334556667777778888888888776541 12235567
Q ss_pred HHHHHHHHhHHHHHHh
Q 023064 171 ATANTLRSNLEQVLAH 186 (288)
Q Consensus 171 a~A~~Lra~L~q~l~q 186 (288)
..+.+|...|..++..
T Consensus 95 ~q~~~L~~kf~e~m~~ 110 (127)
T 1ez3_A 95 TQHSTLSRKFVEVMSE 110 (127)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7778888888887753
No 102
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=63.58 E-value=47 Score=25.33 Aligned_cols=47 Identities=32% Similarity=0.508 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--hHHHHHHhhHHHHHHHHHHHHHHHH
Q 023064 101 TEKVILELEEQRKRQSRMLISAIQE--GVANKLKEKDEEIHRMRKLNWVLQE 150 (288)
Q Consensus 101 ~Erlr~~L~e~r~r~~r~ll~avE~--~~~~rLReKe~Eie~a~r~n~eLEE 150 (288)
.++-|..|+|+||. +|-.+++. ..-.++-.|++||...+..|.+|.+
T Consensus 26 se~YWk~lAE~RR~---AL~eaL~EN~~Lh~~ie~l~eEi~~lk~en~eL~e 74 (83)
T 1uii_A 26 SSQYWKEVAEKRRK---ALYEALKENEKLHKEIEQKDNEIARLKKENKELAE 74 (83)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888888864 33333332 1223344445555555544444443
No 103
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=63.09 E-value=37 Score=26.54 Aligned_cols=53 Identities=26% Similarity=0.243 Sum_probs=32.1
Q ss_pred HHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHH
Q 023064 121 SAIQEGVANKLKEKDEEIHRMRKLNWVLQERVKSLFVENQIWRDLAQTNEATANTLRSNLEQVL 184 (288)
Q Consensus 121 ~avE~~~~~rLReKe~Eie~a~r~n~eLEErlrql~~E~qaWq~~A~~nEa~A~~Lra~L~q~l 184 (288)
+-+...|-.-.++.+.||.++.++...||.- ....-.|+.+ |+.|.++|+..-
T Consensus 39 arLc~~Vd~t~~eL~~EI~~L~~eI~~LE~i----qs~aK~LRnK-------A~~L~~eLe~F~ 91 (96)
T 1t3j_A 39 ARLCQQVDMTQKHLEEEIARLSKEIDQLEKM----QNNSKLLRNK-------AVQLESELENFS 91 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhHHHHHH-------HHHHHHHHHHHH
Confidence 3333444444577788888888888888753 3333345443 456666776543
No 104
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=62.80 E-value=9.8 Score=24.72 Aligned_cols=27 Identities=22% Similarity=0.479 Sum_probs=20.3
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 023064 130 KLKEKDEEIHRMRKLNWVLQERVKSLF 156 (288)
Q Consensus 130 rLReKe~Eie~a~r~n~eLEErlrql~ 156 (288)
|+.+.|+-+|....++++||..+.+|.
T Consensus 2 RMnQLE~KVEeLl~~~~~Le~eV~RLk 28 (36)
T 1kd8_B 2 KVKQLKAKVEELKSKLWHLKNKVARLK 28 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 566777788888888888887665554
No 105
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=62.63 E-value=26 Score=35.12 Aligned_cols=28 Identities=7% Similarity=0.083 Sum_probs=18.5
Q ss_pred HHHhhhHHHHHHHHHhHHHHHHHHHHHH
Q 023064 85 RLQQQQSEIDRYIAQHTEKVILELEEQR 112 (288)
Q Consensus 85 ~l~~Q~~EiD~~i~~q~Erlr~~L~e~r 112 (288)
+|++-..++++|++...|.||..+....
T Consensus 75 dlsKnsKdseqy~k~~~E~Lr~rq~q~~ 102 (562)
T 3ghg_A 75 EYQKNNKDSHSLTTNIMEILRGDFSSAN 102 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSHHHHHH
T ss_pred HHHhhchhHHHHHHHHHHHHHHHHHhhh
Confidence 4556667788887777777766555444
No 106
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=62.45 E-value=92 Score=37.63 Aligned_cols=27 Identities=7% Similarity=-0.028 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023064 135 DEEIHRMRKLNWVLQERVKSLFVENQI 161 (288)
Q Consensus 135 e~Eie~a~r~n~eLEErlrql~~E~qa 161 (288)
+++++.+..+.++||+++.++..+-+.
T Consensus 2027 ~~~L~~~~~~L~~le~~l~~L~~~~~~ 2053 (3245)
T 3vkg_A 2027 KLKQDEIVATITALEKSIATYKEEYAT 2053 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444445555555554444433
No 107
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=61.61 E-value=20 Score=24.05 Aligned_cols=31 Identities=19% Similarity=0.210 Sum_probs=24.7
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023064 129 NKLKEKDEEIHRMRKLNWVLQERVKSLFVEN 159 (288)
Q Consensus 129 ~rLReKe~Eie~a~r~n~eLEErlrql~~E~ 159 (288)
+++---+.||++...+..+|..++++|+..+
T Consensus 9 qkI~kVdrEI~Kte~kI~~lqkKlkeLee~a 39 (42)
T 2l5g_B 9 QNMDRVDREITMVEQQISKLKKKQQQLEEEA 39 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4445567899999999999999999987654
No 108
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=60.41 E-value=1.5 Score=42.11 Aligned_cols=46 Identities=24% Similarity=0.444 Sum_probs=30.4
Q ss_pred cccccccccccc---eE-----EeCCCCcccCcchhhhc--------------CCCCccccccccceEE
Q 023064 238 MLCRRCGEKESS---VL-----LLPCRHLCLCTVCGSCL--------------IGSCPVCNFVVDASLH 284 (288)
Q Consensus 238 ~~C~iC~~~~~~---vl-----LlPCrHlclC~~C~~~l--------------~~~CPvCr~~i~~~v~ 284 (288)
..|.||++.-.. +- -.+|+|. +=..|-... ...||+||.+|+.+..
T Consensus 309 ~ECaICys~~l~~g~lPdk~C~n~~C~h~-FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~sf~ 376 (381)
T 3k1l_B 309 LRCNICFAYRLDGGEVPLVSCDNAKCVLK-CHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTSFA 376 (381)
T ss_dssp CSCSSSCCSSCTTCCCCCBCCSCTTCCCC-BCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGGGG
T ss_pred ccCcccceeecCCCCCccccccCCccCCc-cchHHHHHHHHhCCCccccccccCCCCCCCCCcCCccHH
Confidence 369999975443 11 1368887 566775432 2679999999987653
No 109
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=59.80 E-value=1.3e+02 Score=30.11 Aligned_cols=85 Identities=14% Similarity=0.193 Sum_probs=45.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH------HHH--HHHHHH---H
Q 023064 98 AQHTEKVILELEEQRKRQSRMLISAIQEGVANKLKEKDEEIHRMRKLNWVLQERVKSLF------VEN--QIWRDL---A 166 (288)
Q Consensus 98 ~~q~Erlr~~L~e~r~r~~r~ll~avE~~~~~rLReKe~Eie~a~r~n~eLEErlrql~------~E~--qaWq~~---A 166 (288)
+.+.|+.|++|.+.-+-+.+.== ....+.+-+-....||+.+++..+++..-+.+.. +|+ ..||.- |
T Consensus 320 er~~e~a~ael~~a~k~~a~~~e--r~~~t~~~~~~~~~~~~~~n~~~~~~~~~~~~f~~~n~~p~~~Gh~~w~~~~~~~ 397 (551)
T 2b5u_A 320 ERNYERARAELNQANEDVARNQE--RQAKAVQVYNSRKSELDAANKTLADAIAEIKQFNRFAHDPMAGGHRMWQMAGLKA 397 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTCTTSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhhHHHHHhhhhHHHHHHHhhhhhhhhccChhhccchhhhhccchh
Confidence 34456666666655433332111 1111123334444588888888888888777766 222 589884 3
Q ss_pred HhhHHHHHHHHHhHHHHH
Q 023064 167 QTNEATANTLRSNLEQVL 184 (288)
Q Consensus 167 ~~nEa~A~~Lra~L~q~l 184 (288)
+-...-++.+.+.++.+-
T Consensus 398 ~~~~~dv~~~~a~~d~~~ 415 (551)
T 2b5u_A 398 QRAQTDVNNKQAAFDAAA 415 (551)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhHHHHHHHHh
Confidence 333334555555555543
No 110
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=59.38 E-value=52 Score=26.69 Aligned_cols=52 Identities=19% Similarity=0.411 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 023064 101 TEKVILELEEQRKRQSRMLISAIQEG---VANKLKEKDEEIHRMRKLNWVLQERVK 153 (288)
Q Consensus 101 ~Erlr~~L~e~r~r~~r~ll~avE~~---~~~rLReKe~Eie~a~r~n~eLEErlr 153 (288)
.+-|+..|++...+- ...+.-++.- .-.+|+.+.+|+|+.++.|..|.-|+.
T Consensus 55 V~tL~~SL~~ekaq~-q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~ 109 (121)
T 3mq7_A 55 VMALMASLDAEKAQG-QKKVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRIA 109 (121)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHhh
Confidence 455666665544332 2223333322 235677778888888888877776663
No 111
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=57.42 E-value=18 Score=36.19 Aligned_cols=74 Identities=12% Similarity=0.050 Sum_probs=36.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 023064 99 QHTEKVILELEEQRKRQSRMLISAIQEGVANKLKEKDEEIHRMRKLNWVLQERVKSLFVENQIWRDLAQTNEATANTLRS 178 (288)
Q Consensus 99 ~q~Erlr~~L~e~r~r~~r~ll~avE~~~~~rLReKe~Eie~a~r~n~eLEErlrql~~E~qaWq~~A~~nEa~A~~Lra 178 (288)
+..+||+..-.|-|.| .-+|+.-..+-++.-++++ +...||++|++++..|...|+......+.+|.-|..
T Consensus 300 ~e~qqm~~~a~e~~~~------~~~e~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e 370 (575)
T 2i1j_A 300 IDVQQMKAQAREEKLA------KQAQREKLQLEIAARERAE---KKQQEYQDRLRQMQEEMERSQANLLEAQDMILRLEE 370 (575)
T ss_dssp HHHHHHHHHHHHHHHH------HHHHHTTCCSCCCHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3466776665554433 2344443333333223333 334677777777777777777776666666655554
Q ss_pred hHH
Q 023064 179 NLE 181 (288)
Q Consensus 179 ~L~ 181 (288)
.+.
T Consensus 371 ~~~ 373 (575)
T 2i1j_A 371 QLR 373 (575)
T ss_dssp ---
T ss_pred HHH
Confidence 443
No 112
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=56.87 E-value=71 Score=25.21 Aligned_cols=23 Identities=17% Similarity=-0.016 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 023064 142 RKLNWVLQERVKSLFVENQIWRD 164 (288)
Q Consensus 142 ~r~n~eLEErlrql~~E~qaWq~ 164 (288)
..+..+|+..|++|..|||.-..
T Consensus 64 ~~~v~eLe~everL~~ENq~L~~ 86 (104)
T 3s9g_A 64 DARVRELELELDRLRAENLQLLT 86 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Confidence 56888999999999999987643
No 113
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=56.01 E-value=61 Score=24.19 Aligned_cols=28 Identities=25% Similarity=0.227 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023064 136 EEIHRMRKLNWVLQERVKSLFVENQIWR 163 (288)
Q Consensus 136 ~Eie~a~r~n~eLEErlrql~~E~qaWq 163 (288)
..++.+...|..|..+|.+|..|...++
T Consensus 43 ~r~~~L~~eN~~L~~~v~~L~~E~~~Lr 70 (78)
T 1gu4_A 43 HKVLELTAENERLQKKVEQLSRELSTLR 70 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666666666666666665554
No 114
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens}
Probab=55.87 E-value=34 Score=29.17 Aligned_cols=29 Identities=21% Similarity=0.307 Sum_probs=19.9
Q ss_pred HhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 023064 125 EGVANKLKEKDEEIHRMRKLNWVLQERVKSLF 156 (288)
Q Consensus 125 ~~~~~rLReKe~Eie~a~r~n~eLEErlrql~ 156 (288)
.-+..+|.+.|..++.++ ..|||+|++..
T Consensus 8 ee~~e~L~~~e~l~~el~---~tWeeKl~~te 36 (184)
T 4egx_A 8 EEAIERLKETEKIIAELN---ETWEEKLRRTE 36 (184)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH---hHHHHHHHHHH
Confidence 345567777777776664 47888887654
No 115
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=55.09 E-value=47 Score=26.75 Aligned_cols=44 Identities=18% Similarity=0.226 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHH
Q 023064 142 RKLNWVLQERVKSLFVENQIWRDLAQTNEATANTLRSNLEQVLA 185 (288)
Q Consensus 142 ~r~n~eLEErlrql~~E~qaWq~~A~~nEa~A~~Lra~L~q~l~ 185 (288)
.+...+|+.+|.+|.+|-..-+...+.+-.-..-|+.+++.+..
T Consensus 39 q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l~~ 82 (120)
T 3i00_A 39 QRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDELRR 82 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555544433333333346666665433
No 116
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=52.96 E-value=64 Score=23.58 Aligned_cols=14 Identities=36% Similarity=0.361 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHHH
Q 023064 145 NWVLQERVKSLFVE 158 (288)
Q Consensus 145 n~eLEErlrql~~E 158 (288)
|..|-+.+..|..|
T Consensus 52 n~~Lr~~i~~L~~E 65 (70)
T 1gd2_E 52 NDQLRQKVRQLEEE 65 (70)
T ss_dssp HHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 117
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=52.96 E-value=35 Score=30.41 Aligned_cols=33 Identities=24% Similarity=0.440 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 023064 138 IHRMRKLNWVLQERVKSLFVENQIWRDLAQTNEATANTLR 177 (288)
Q Consensus 138 ie~a~r~n~eLEErlrql~~E~qaWq~~A~~nEa~A~~Lr 177 (288)
+++.+.||.+||+++++|- ..|++|++....++
T Consensus 74 ~~~LR~r~~~Le~~L~~Li-------~~A~~Ne~l~~~~~ 106 (252)
T 3e98_A 74 VRLLRERNIEMRHRLSQLM-------DVARENDRLFDKTR 106 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 4444556677777776664 34555555554444
No 118
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=52.81 E-value=57 Score=22.93 Aligned_cols=35 Identities=14% Similarity=0.176 Sum_probs=23.4
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023064 132 KEKDEEIHRMRKLNWVLQERVKSLFVENQIWRDLA 166 (288)
Q Consensus 132 ReKe~Eie~a~r~n~eLEErlrql~~E~qaWq~~A 166 (288)
-+.+.+.+.....|.+|...+.+|..|.+.|..+-
T Consensus 26 ~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l 60 (63)
T 2wt7_A 26 DTLQAETDQLEDEKSALQTEIANLLKEKEKLEFIL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445666777777777777777777777766553
No 119
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=51.77 E-value=28 Score=24.12 Aligned_cols=32 Identities=19% Similarity=0.172 Sum_probs=26.0
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023064 128 ANKLKEKDEEIHRMRKLNWVLQERVKSLFVEN 159 (288)
Q Consensus 128 ~~rLReKe~Eie~a~r~n~eLEErlrql~~E~ 159 (288)
..|+++...++..+..+|..|.+-|+....|-
T Consensus 8 ~~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el 39 (51)
T 3m91_A 8 ARDIHQLEARIDSLAARNSKLMETLKEARQQL 39 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888899999999999998887776543
No 120
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=49.94 E-value=1.2e+02 Score=25.84 Aligned_cols=94 Identities=15% Similarity=0.126 Sum_probs=50.7
Q ss_pred HHHHHhhhHHHHHHHHHhHH---HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHH----HH
Q 023064 83 IFRLQQQQSEIDRYIAQHTE---KVILELEEQRKRQSRMLISAIQEGVANKLKEKDEEIHRMRKLNWVLQERVK----SL 155 (288)
Q Consensus 83 ~~~l~~Q~~EiD~~i~~q~E---rlr~~L~e~r~r~~r~ll~avE~~~~~rLReKe~Eie~a~r~n~eLEErlr----ql 155 (288)
..+|++|-.|+...++.++| |||+...|.++. ++.+|.. +|+..+-+..+.....+||..+. +|
T Consensus 8 i~~LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~-----~~~~E~~----~rELq~~~~~L~~~k~~Leke~~~LQa~L 78 (168)
T 3o0z_A 8 LSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKS-----ISQLESL----NRELQERNRILENSKSQTDKDYYQLQAIL 78 (168)
T ss_dssp --CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-----HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999876 788777776633 2333322 23333333333333334444332 23
Q ss_pred HHHHHHHHHHH---HhhHHHHHHHHHhHHHHHH
Q 023064 156 FVENQIWRDLA---QTNEATANTLRSNLEQVLA 185 (288)
Q Consensus 156 ~~E~qaWq~~A---~~nEa~A~~Lra~L~q~l~ 185 (288)
..|-..|.... .+-+....+|+.+|+++..
T Consensus 79 ~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~ 111 (168)
T 3o0z_A 79 EAERRDRGHDSEMIGDLQARITSLQEEVKHLKH 111 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444443322 2444556666666666544
No 121
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=49.89 E-value=98 Score=25.53 Aligned_cols=86 Identities=10% Similarity=0.214 Sum_probs=47.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHhhH
Q 023064 98 AQHTEKVILELEEQRKRQSRMLISAIQEGVANKL-KEKDEEIHRMRKLNWVLQERVKSLFVENQI------WRDLAQTNE 170 (288)
Q Consensus 98 ~~q~Erlr~~L~e~r~r~~r~ll~avE~~~~~rL-ReKe~Eie~a~r~n~eLEErlrql~~E~qa------Wq~~A~~nE 170 (288)
+...++|+.-+.+..+.|.+.|.++-... .+ ++.+.-+..+.+....+..+|+.+..++.. +-...+-..
T Consensus 49 ~~~i~~i~~~v~~l~~~~~~~L~~~~~~~---~~k~~le~l~~~i~~~a~~ik~~Lk~l~~~~~~~~~~~~~s~~~Rir~ 125 (180)
T 1s94_A 49 RAMIDKISDNVDAVKKKHSDILSAPQTDD---QMKEELEELMTDIKRTANKVRGKLKTIELNIEQEEHSNKSSADLRIRK 125 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCC----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----CCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCchH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcHHHHHHH
Confidence 44455666667777777776654322111 22 223334555666777777788877765432 111223345
Q ss_pred HHHHHHHHhHHHHHHh
Q 023064 171 ATANTLRSNLEQVLAH 186 (288)
Q Consensus 171 a~A~~Lra~L~q~l~q 186 (288)
...++|...+..++..
T Consensus 126 ~q~~~L~~kf~~~m~~ 141 (180)
T 1s94_A 126 TQYSTISRKFVEVMSD 141 (180)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5677888888887653
No 122
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=49.78 E-value=62 Score=22.47 Aligned_cols=34 Identities=24% Similarity=0.222 Sum_probs=23.3
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023064 132 KEKDEEIHRMRKLNWVLQERVKSLFVENQIWRDL 165 (288)
Q Consensus 132 ReKe~Eie~a~r~n~eLEErlrql~~E~qaWq~~ 165 (288)
.+.+.+++.+...|.+|...+..|..|...|+..
T Consensus 25 ~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ 58 (61)
T 1t2k_D 25 QSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566677777777777777777777766543
No 123
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=48.88 E-value=1e+02 Score=24.76 Aligned_cols=30 Identities=13% Similarity=0.202 Sum_probs=23.4
Q ss_pred CcccchHHHHHHHHhhhHHHHHHHHHhHHH
Q 023064 74 FSSLLDQDIIFRLQQQQSEIDRYIAQHTEK 103 (288)
Q Consensus 74 ~~s~~~~~l~~~l~~Q~~EiD~~i~~q~Er 103 (288)
++++.+|-|.-+|++=+.+.|.+++.|-++
T Consensus 29 ~~~~~sDPL~~ELeRLr~~~d~~~K~HE~k 58 (115)
T 3vem_A 29 PFPVFNDPFLHELEKLRRESENSKKTFEEK 58 (115)
T ss_dssp ----CCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667889999999999999999999776
No 124
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=48.15 E-value=38 Score=21.12 Aligned_cols=27 Identities=26% Similarity=0.332 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023064 135 DEEIHRMRKLNWVLQERVKSLFVENQI 161 (288)
Q Consensus 135 e~Eie~a~r~n~eLEErlrql~~E~qa 161 (288)
|+|+-+.+.-..+|++|+.+++.-.|+
T Consensus 5 ee~~r~l~~ivq~lq~r~drle~tvqa 31 (32)
T 2akf_A 5 EEDVRNLNAIVQKLQERLDRLEETVQA 31 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 457777777777778877777655543
No 125
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=48.08 E-value=89 Score=23.78 Aligned_cols=78 Identities=13% Similarity=0.198 Sum_probs=44.2
Q ss_pred chHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 023064 78 LDQDIIFRLQQQQSEIDRYIAQHTEKVILELEEQRKRQSRMLISAIQEGVANKLKEKDEEIHRMRKLNWVLQERVKSLFV 157 (288)
Q Consensus 78 ~~~~l~~~l~~Q~~EiD~~i~~q~Erlr~~L~e~r~r~~r~ll~avE~~~~~rLReKe~Eie~a~r~n~eLEErlrql~~ 157 (288)
|.+-+++.|++ =|||-.|+..|...+++.+.+....+=..-| .....||. .|+.+...+..|+-.+..+..
T Consensus 14 LNdRlAsyIdK-----VR~LEqqN~~Le~~i~~l~~~~~~~~~~~ye-~~i~~Lr~---~i~~~~~ek~~l~~e~dnl~~ 84 (93)
T 3s4r_A 14 LNDRFANLIDK-----VRFLEQQNKILLAELEQLKGQGKSRLGDLYE-EEMRELRR---QVDQLTNDKARVEVERDNLAE 84 (93)
T ss_dssp HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhhccCCCcHHHHH-HHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 45556666654 2566666666666666666554322222222 22333443 677777777777777777666
Q ss_pred HHHHHHH
Q 023064 158 ENQIWRD 164 (288)
Q Consensus 158 E~qaWq~ 164 (288)
+...++.
T Consensus 85 ~~~~~k~ 91 (93)
T 3s4r_A 85 DIMRLRE 91 (93)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 6665543
No 126
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=48.06 E-value=1.1e+02 Score=24.63 Aligned_cols=66 Identities=14% Similarity=0.217 Sum_probs=35.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023064 91 SEIDRYIAQHTEKVILELEEQRKRQSRMLISAIQEGVANKLKEKDEEIHRMRKLNWVLQERVKSLFVENQIW 162 (288)
Q Consensus 91 ~EiD~~i~~q~Erlr~~L~e~r~r~~r~ll~avE~~~~~rLReKe~Eie~a~r~n~eLEErlrql~~E~qaW 162 (288)
..||+ |+..+++|+..|+.....+.+.+ .-++ .++-+.+.|++..+....+.-.-..+|.+|.+.-
T Consensus 15 ~~Ie~-Lkreie~lk~ele~l~~E~q~~v-~ql~----~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l 80 (120)
T 3i00_A 15 HLIER-LYREISGLKAQLENMKTESQRVV-LQLK----GHVSELEADLAEQQHLRQQAADDCEFLRAELDEL 80 (120)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHHHHHHH-HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHH-HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555 45566666666666654444333 3333 4566677777776655444333334455555544
No 127
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=47.84 E-value=8.8 Score=35.65 Aligned_cols=42 Identities=19% Similarity=0.440 Sum_probs=32.0
Q ss_pred cccccccccccceEEeC----CCC-cccCcchhhhc---CCCCccccccc
Q 023064 238 MLCRRCGEKESSVLLLP----CRH-LCLCTVCGSCL---IGSCPVCNFVV 279 (288)
Q Consensus 238 ~~C~iC~~~~~~vlLlP----CrH-lclC~~C~~~l---~~~CPvCr~~i 279 (288)
..|.+|+..+.-.++.. =|+ +..|..|+... -..||.|....
T Consensus 183 ~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~~ 232 (309)
T 2fiy_A 183 TLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEESK 232 (309)
T ss_dssp SSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCTTSCSSSCCCS
T ss_pred CCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCCC
Confidence 37999999988777652 333 46799998776 68999999873
No 128
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=47.15 E-value=15 Score=26.94 Aligned_cols=42 Identities=19% Similarity=0.283 Sum_probs=24.4
Q ss_pred ccccccccccceEE-eCCCCcccCcchhhhc-----CCCCccccccccc
Q 023064 239 LCRRCGEKESSVLL-LPCRHLCLCTVCGSCL-----IGSCPVCNFVVDA 281 (288)
Q Consensus 239 ~C~iC~~~~~~vlL-lPCrHlclC~~C~~~l-----~~~CPvCr~~i~~ 281 (288)
.|.||++--..-.. .-|+|. +=..|..+. ..+||+||.....
T Consensus 17 ~C~IC~~~i~~g~~C~~C~h~-fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 17 ICNICHSLLIQGQSCETCGIR-MHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp BCSSSCCBCSSSEECSSSCCE-ECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred cCcchhhHcccCCccCCCCch-hhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 68888875432111 145554 334555433 2789999988654
No 129
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=45.13 E-value=6.2 Score=29.59 Aligned_cols=29 Identities=21% Similarity=0.627 Sum_probs=22.0
Q ss_pred ccccccccc---ccceEEeCCCCcccCcchhhh
Q 023064 238 MLCRRCGEK---ESSVLLLPCRHLCLCTVCGSC 267 (288)
Q Consensus 238 ~~C~iC~~~---~~~vlLlPCrHlclC~~C~~~ 267 (288)
..|.+|.+. ++...-++|+|. +|..|...
T Consensus 4 ~~C~~C~~~~~~~av~~C~~C~~~-~C~~Cl~~ 35 (101)
T 2jun_A 4 VLCQFCDQDPAQDAVKTCVTCEVS-YCDECLKA 35 (101)
T ss_dssp CBCTTCCSSSCCBCCEEETTTTEE-ECHHHHHH
T ss_pred CCCcCCCCCCCCCceEECCcCChH-HhHHHCHH
Confidence 479999963 344444999998 89999875
No 130
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=44.72 E-value=51 Score=24.48 Aligned_cols=21 Identities=29% Similarity=0.215 Sum_probs=8.3
Q ss_pred HhhHHHHHHHHHHHHHHHHHH
Q 023064 132 KEKDEEIHRMRKLNWVLQERV 152 (288)
Q Consensus 132 ReKe~Eie~a~r~n~eLEErl 152 (288)
+.|++||..--.++.+||.+|
T Consensus 29 ~~K~eELr~kd~~I~eLEk~L 49 (72)
T 3nmd_A 29 QEKIEELRQRDALIDELELEL 49 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444433333333333333
No 131
>1x4t_A Hypothetical protein LOC57905; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.2.15.1
Probab=44.71 E-value=25 Score=27.39 Aligned_cols=28 Identities=18% Similarity=0.317 Sum_probs=23.7
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 023064 129 NKLKEKDEEIHRMRKLNWVLQERVKSLF 156 (288)
Q Consensus 129 ~rLReKe~Eie~a~r~n~eLEErlrql~ 156 (288)
-++|+...||.++-+....||-+++.|.
T Consensus 52 ~~IRdLNDEINkL~rEK~~WE~rI~eLG 79 (92)
T 1x4t_A 52 FRIRDLNDEINKLLREKGHWEVRIKELG 79 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3589999999999999999999887663
No 132
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=43.64 E-value=77 Score=30.29 Aligned_cols=53 Identities=9% Similarity=0.055 Sum_probs=33.5
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHH
Q 023064 132 KEKDEEIHRMRKLNWVLQERVKSLFVENQIWRDLAQTNEATANTLRSNLEQVL 184 (288)
Q Consensus 132 ReKe~Eie~a~r~n~eLEErlrql~~E~qaWq~~A~~nEa~A~~Lra~L~q~l 184 (288)
.+.++|+...+.+..+|++.++++..|...-...-...|..-..|+++++.+.
T Consensus 6 ~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~ 58 (412)
T 3u06_A 6 AALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLR 58 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34455777777777777777777777766666555555555555666666553
No 133
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=42.84 E-value=38 Score=23.74 Aligned_cols=36 Identities=11% Similarity=0.186 Sum_probs=28.3
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023064 129 NKLKEKDEEIHRMRKLNWVLQERVKSLFVENQIWRD 164 (288)
Q Consensus 129 ~rLReKe~Eie~a~r~n~eLEErlrql~~E~qaWq~ 164 (288)
.++.+.+.+++.+...|.+|...+..|..|....+.
T Consensus 22 ~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~ 57 (62)
T 1jnm_A 22 ERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQ 57 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666788899999999999999999988765543
No 134
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=42.13 E-value=34 Score=21.77 Aligned_cols=25 Identities=20% Similarity=0.508 Sum_probs=14.7
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHH
Q 023064 131 LKEKDEEIHRMRKLNWVLQERVKSL 155 (288)
Q Consensus 131 LReKe~Eie~a~r~n~eLEErlrql 155 (288)
+-+.|..++..-.+|.+||.-+.+|
T Consensus 2 M~QLE~kVEeLl~~n~~Le~EV~RL 26 (33)
T 3m48_A 2 MAQLEAKVEELLSKNWNLENEVARL 26 (33)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhHHHHHHHHHH
Confidence 4455566666666666666655554
No 135
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=40.88 E-value=34 Score=21.91 Aligned_cols=27 Identities=4% Similarity=0.188 Sum_probs=16.9
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 023064 130 KLKEKDEEIHRMRKLNWVLQERVKSLF 156 (288)
Q Consensus 130 rLReKe~Eie~a~r~n~eLEErlrql~ 156 (288)
|+.+.|...|.+-.+|.+||..+.++.
T Consensus 2 RM~QLEdKVEeLl~~n~~Le~EV~RLk 28 (34)
T 1uo4_A 2 RMKQIEDKGEEILSKLYHIENELARIK 28 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 455666666777777777776655543
No 136
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=40.32 E-value=10 Score=32.05 Aligned_cols=17 Identities=24% Similarity=0.446 Sum_probs=14.1
Q ss_pred CCCCccccccccceEEE
Q 023064 269 IGSCPVCNFVVDASLHV 285 (288)
Q Consensus 269 ~~~CPvCr~~i~~~v~V 285 (288)
...||+|..++..+..+
T Consensus 153 p~~CP~Cg~~~~~F~~~ 169 (170)
T 3pwf_A 153 PEYCPVCGAPKEKFVVF 169 (170)
T ss_dssp CSBCTTTCCBGGGCEEE
T ss_pred CCCCCCCCCCHHHceec
Confidence 67999999998877654
No 137
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=40.31 E-value=39 Score=21.51 Aligned_cols=25 Identities=4% Similarity=0.256 Sum_probs=13.6
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHH
Q 023064 131 LKEKDEEIHRMRKLNWVLQERVKSL 155 (288)
Q Consensus 131 LReKe~Eie~a~r~n~eLEErlrql 155 (288)
+.+.|.-+|.+-.+|.+||..+.++
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV~RL 26 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXLARI 26 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3444555555555666666555444
No 138
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=40.15 E-value=39 Score=21.50 Aligned_cols=26 Identities=8% Similarity=0.161 Sum_probs=15.9
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHH
Q 023064 130 KLKEKDEEIHRMRKLNWVLQERVKSL 155 (288)
Q Consensus 130 rLReKe~Eie~a~r~n~eLEErlrql 155 (288)
|+.+.|.-+|....++.+|+..+.++
T Consensus 1 RMnQLEdKVEell~~~~~le~EV~Rl 26 (33)
T 2wq1_A 1 RMKQLEDKIEENTSKIYHNTNEIARN 26 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHhhHHHHHHHHHH
Confidence 34555666666666666776655544
No 139
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=39.24 E-value=1.9e+02 Score=25.01 Aligned_cols=58 Identities=12% Similarity=0.189 Sum_probs=50.8
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHhcC
Q 023064 131 LKEKDEEIHRMRKLNWVLQERVKSLFVENQIWRDLAQTNEATANTLRSNLEQVLAHVG 188 (288)
Q Consensus 131 LReKe~Eie~a~r~n~eLEErlrql~~E~qaWq~~A~~nEa~A~~Lra~L~q~l~q~~ 188 (288)
+-..+.||...+..+..|..+++.|.+.|+.--+..+...+....+...|.+++...+
T Consensus 90 ~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~a 147 (189)
T 2v71_A 90 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNA 147 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 4445668999999999999999999999999999999999999999999999887653
No 140
>1lwu_B Fibrinogen beta chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_B*
Probab=39.20 E-value=39 Score=31.55 Aligned_cols=32 Identities=19% Similarity=0.283 Sum_probs=20.0
Q ss_pred HHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 023064 124 QEGVANKLKEKDEEIHRMRKLNWVLQERVKSL 155 (288)
Q Consensus 124 E~~~~~rLReKe~Eie~a~r~n~eLEErlrql 155 (288)
|..+.+.||..+.+++.++.|+..||..+.++
T Consensus 23 ~~~~~~~I~~Lq~~le~L~~KI~~LE~~v~~q 54 (323)
T 1lwu_B 23 ESTVAGSLRSMKSVLEHLRAKMQRMEEAIKTQ 54 (323)
T ss_dssp HTTTHHHHHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444456666667777777777777666543
No 141
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=39.06 E-value=4.2e+02 Score=32.19 Aligned_cols=33 Identities=3% Similarity=0.103 Sum_probs=14.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023064 132 KEKDEEIHRMRKLNWVLQERVKSLFVENQIWRD 164 (288)
Q Consensus 132 ReKe~Eie~a~r~n~eLEErlrql~~E~qaWq~ 164 (288)
++.+++++.+..+..+.++.++.+..+-+.-+.
T Consensus 2017 ~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~ 2049 (3245)
T 3vkg_A 2017 EQLENAANELKLKQDEIVATITALEKSIATYKE 2049 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444333
No 142
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=39.04 E-value=38 Score=21.68 Aligned_cols=27 Identities=22% Similarity=0.368 Sum_probs=15.6
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 023064 130 KLKEKDEEIHRMRKLNWVLQERVKSLF 156 (288)
Q Consensus 130 rLReKe~Eie~a~r~n~eLEErlrql~ 156 (288)
|+.+.|.-+|..-.+|.+||..+.+|.
T Consensus 2 RMnQLEdkVEeLl~~~~~Le~eV~RL~ 28 (34)
T 2hy6_A 2 KVKQLADAVEELASANYHLANAVARLA 28 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 455555666666666666666555543
No 143
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=38.20 E-value=92 Score=23.67 Aligned_cols=37 Identities=24% Similarity=0.206 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 023064 141 MRKLNWVLQERVKSLFVENQIWRDLAQTNEATANTLR 177 (288)
Q Consensus 141 a~r~n~eLEErlrql~~E~qaWq~~A~~nEa~A~~Lr 177 (288)
.+.+..+++.++..|..||..-+.....-+.....|+
T Consensus 34 rk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr 70 (87)
T 1hjb_A 34 AKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLR 70 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677888899999999988777655555444444
No 144
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=37.88 E-value=1.9e+02 Score=31.16 Aligned_cols=101 Identities=19% Similarity=0.188 Sum_probs=0.0
Q ss_pred HHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH--hHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023064 85 RLQQQQSEIDRYIAQHTEKVILELEEQRKRQSRMLISAIQE--GVANKLKEKDEEIHRMRKLNWVLQERVKSLFVENQIW 162 (288)
Q Consensus 85 ~l~~Q~~EiD~~i~~q~Erlr~~L~e~r~r~~r~ll~avE~--~~~~rLReKe~Eie~a~r~n~eLEErlrql~~E~qaW 162 (288)
.|+.+-.|+.+=| .+.++....|+++.+..-..+..-++. .-...|+..+.|++.+..+..+|++.+..+..+.+..
T Consensus 925 ~LE~kl~eLq~rL-~~~e~~n~~L~~~~~~~~~~~~~e~~~L~~~l~~le~~~~e~~~~~~~v~~L~~e~~~l~~~~~~~ 1003 (1080)
T 2dfs_A 925 GLENKIMQLQRKI-DEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQT 1003 (1080)
T ss_dssp ---------------------------CHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhhHHHHHHHHHhHHHHHHh
Q 023064 163 RDLAQTNEATANTLRSNLEQVLAH 186 (288)
Q Consensus 163 q~~A~~nEa~A~~Lra~L~q~l~q 186 (288)
...-+.-|.....++.+|++-+..
T Consensus 1004 ~ke~~~lee~~~~~~~~L~~kv~~ 1027 (1080)
T 2dfs_A 1004 QTEKKTIEEWADKYKHETEQLVSE 1027 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
No 145
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=37.19 E-value=1.1e+02 Score=21.66 Aligned_cols=20 Identities=20% Similarity=0.225 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 023064 143 KLNWVLQERVKSLFVENQIW 162 (288)
Q Consensus 143 r~n~eLEErlrql~~E~qaW 162 (288)
.+..+||.++.+|..||..+
T Consensus 30 ~~~~~Le~~v~~L~~eN~~L 49 (63)
T 2dgc_A 30 QRMKQLEDKVEELLSKNYHL 49 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34567777777777766654
No 146
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=36.33 E-value=53 Score=21.03 Aligned_cols=24 Identities=17% Similarity=0.231 Sum_probs=11.2
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHH
Q 023064 132 KEKDEEIHRMRKLNWVLQERVKSL 155 (288)
Q Consensus 132 ReKe~Eie~a~r~n~eLEErlrql 155 (288)
-+.|.-++..-.+|.+|+..+.+|
T Consensus 4 nQLE~kVEeLl~~n~~Le~eV~rL 27 (34)
T 2oxj_A 4 XQLEXKVXELLXKNXHLEXEVXRL 27 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHH
Confidence 344444444444555555444443
No 147
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=34.03 E-value=1.2e+02 Score=25.68 Aligned_cols=11 Identities=18% Similarity=0.280 Sum_probs=5.4
Q ss_pred hhhHHHHHHHH
Q 023064 88 QQQSEIDRYIA 98 (288)
Q Consensus 88 ~Q~~EiD~~i~ 98 (288)
.|+.+|+.+.+
T Consensus 71 EQq~ql~~I~~ 81 (175)
T 3lay_A 71 EQQATAQKIYD 81 (175)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44555555543
No 148
>2p4v_A Transcription elongation factor GREB; transcript cleavage, GRE-factors, RNA polymerase; 2.60A {Escherichia coli}
Probab=33.71 E-value=1e+02 Score=25.36 Aligned_cols=19 Identities=21% Similarity=0.237 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 023064 137 EIHRMRKLNWVLQERVKSL 155 (288)
Q Consensus 137 Eie~a~r~n~eLEErlrql 155 (288)
|-..++++..++|.|++.|
T Consensus 47 eY~aak~~q~~~e~rI~~L 65 (158)
T 2p4v_A 47 DYQYNKKRLREIDRRVRYL 65 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3333444455555555444
No 149
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=33.69 E-value=1.8e+02 Score=27.88 Aligned_cols=42 Identities=19% Similarity=0.162 Sum_probs=32.7
Q ss_pred hHHHHH------HHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 023064 79 DQDIIF------RLQQQQSEIDRYIAQHTEKVILELEEQRKRQSRMLI 120 (288)
Q Consensus 79 ~~~l~~------~l~~Q~~EiD~~i~~q~Erlr~~L~e~r~r~~r~ll 120 (288)
++|+-. .|+.--++.++=|+...+.|+..|.+..+-|.....
T Consensus 41 DeDwG~kCPsGCrLqg~Ldk~er~~~~rIe~L~~~L~~~s~s~~~~~~ 88 (390)
T 1deq_A 41 DEDWNTKCPSGCRMKGLIDEVDQDFTSRINKLRDSLFNYQKNSKDSNT 88 (390)
T ss_pred hhhccCCCCccchHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 666643 466667777788999999999999999988865543
No 150
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=33.22 E-value=58 Score=20.85 Aligned_cols=26 Identities=12% Similarity=0.217 Sum_probs=16.0
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHH
Q 023064 130 KLKEKDEEIHRMRKLNWVLQERVKSL 155 (288)
Q Consensus 130 rLReKe~Eie~a~r~n~eLEErlrql 155 (288)
||.+.|..+|....++.+|+..+.++
T Consensus 2 RMnQledKvEel~~~~~~l~nEv~Rl 27 (34)
T 2r2v_A 2 KLKQVADKLEEVASKLYHNANELARV 27 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHH
Confidence 45566666666666666666655544
No 151
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=33.04 E-value=59 Score=20.78 Aligned_cols=26 Identities=0% Similarity=0.205 Sum_probs=13.3
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHH
Q 023064 130 KLKEKDEEIHRMRKLNWVLQERVKSL 155 (288)
Q Consensus 130 rLReKe~Eie~a~r~n~eLEErlrql 155 (288)
|+-+.|.-+|.+-.+|.+||..+.+|
T Consensus 2 RMnQLEdKVEeLl~~~~~Le~EV~RL 27 (34)
T 3c3f_A 2 RMXQIEXKLEXILSXLYHXENEXARI 27 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 34444555555555555555544443
No 152
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=32.30 E-value=93 Score=22.03 Aligned_cols=28 Identities=18% Similarity=0.383 Sum_probs=17.5
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 023064 130 KLKEKDEEIHRMRKLNWVLQERVKSLFV 157 (288)
Q Consensus 130 rLReKe~Eie~a~r~n~eLEErlrql~~ 157 (288)
++.+.+.+++.+...|.+|...+.+|..
T Consensus 31 ~~~~Le~~v~~L~~eN~~L~~ev~~Lr~ 58 (63)
T 2dgc_A 31 RMKQLEDKVEELLSKNYHLENEVARLKK 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666667777777766666554
No 153
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=31.90 E-value=1.3e+02 Score=21.08 Aligned_cols=47 Identities=19% Similarity=0.222 Sum_probs=27.6
Q ss_pred hHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 023064 126 GVANKLKEKDEEIHRMRKLNWVLQERVKSLFVENQIWRDLAQTNEATANTLRS 178 (288)
Q Consensus 126 ~~~~rLReKe~Eie~a~r~n~eLEErlrql~~E~qaWq~~A~~nEa~A~~Lra 178 (288)
.++.|-|+|. ..+..+|+.++..|..+|.........-+.-...|+.
T Consensus 12 ~AA~R~R~KK------k~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ 58 (63)
T 1ci6_A 12 TAATRYRQKK------RAEQEALTGECKELEKKNEALKERADSLAKEIQYLKD 58 (63)
T ss_dssp HHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666543 2335567777777777777776665554444444443
No 154
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=31.71 E-value=3.6e+02 Score=25.97 Aligned_cols=105 Identities=17% Similarity=0.176 Sum_probs=58.8
Q ss_pred hHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHH-HHHHH------
Q 023064 79 DQDIIFRLQQQQSEIDRYIAQHTEKVILELEEQRKRQSRMLISAIQEGVANKLKEKDEEIHRMRKLNW-VLQER------ 151 (288)
Q Consensus 79 ~~~l~~~l~~Q~~EiD~~i~~q~Erlr~~L~e~r~r~~r~ll~avE~~~~~rLReKe~Eie~a~r~n~-eLEEr------ 151 (288)
+=+|+..|-+|...||.=|+.=...|. .| +..-.-+..+|.+|.....++-+.+..-|+-+.++.. .|||.
T Consensus 22 tCgl~d~L~kye~~V~~~l~~L~~~l~-~i-sn~Ts~~~~~v~~ik~~~~~~q~~~~~n~~~~~q~Skkml~~~~~~~~~ 99 (411)
T 3ghg_C 22 TCGIADFLSTYQTKVDKDLQSLEDILH-QV-ENKTSEVKQLIKAIQLTYNPDESSKPNMIDAATLKSRKMLEEIMKYEAS 99 (411)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-HHHHHHHHHHHHHHHHHHCTTTCCCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHhccchhhHHHHHHHHHH-HH-HhhhhHHHHHHHHHHHhhccccCCCCcchhhHHHHHHHHHHHHHHHHHH
Confidence 446777888899998886654333222 22 2344556677788877766665555554555555554 33332
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHH
Q 023064 152 VKSLFVENQIWRDLAQTNEATANTLRSNLEQVLA 185 (288)
Q Consensus 152 lrql~~E~qaWq~~A~~nEa~A~~Lra~L~q~l~ 185 (288)
+......-+.-|.++..|......|+..+.++..
T Consensus 100 ~~~~~~~i~~l~~~~~~~~~~i~~L~~~v~~l~~ 133 (411)
T 3ghg_C 100 ILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEA 133 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222333344555666666666555555544443
No 155
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=31.63 E-value=1.3e+02 Score=32.28 Aligned_cols=26 Identities=19% Similarity=0.153 Sum_probs=11.1
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHH
Q 023064 132 KEKDEEIHRMRKLNWVLQERVKSLFV 157 (288)
Q Consensus 132 ReKe~Eie~a~r~n~eLEErlrql~~ 157 (288)
.+++++++++..+..+|++++..+..
T Consensus 909 ~~~e~~l~~l~~~~~~Le~~l~ele~ 934 (1184)
T 1i84_S 909 AEAEEMRVRLAAKKQELEEILHEMEA 934 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444433
No 156
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=31.62 E-value=59 Score=20.81 Aligned_cols=26 Identities=4% Similarity=0.259 Sum_probs=14.3
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHH
Q 023064 130 KLKEKDEEIHRMRKLNWVLQERVKSL 155 (288)
Q Consensus 130 rLReKe~Eie~a~r~n~eLEErlrql 155 (288)
|+.+.|.-+|.+-.+|.+|+..+.++
T Consensus 2 RMnQLEdKvEeLl~~~~~L~~EV~RL 27 (34)
T 2bni_A 2 RMKQIEDKLEEILSKGHHICNELARI 27 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHccHHHHHHHHHH
Confidence 44555555666666666666555444
No 157
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=31.46 E-value=15 Score=31.41 Aligned_cols=16 Identities=19% Similarity=0.266 Sum_probs=13.1
Q ss_pred CCCCccccccccceEE
Q 023064 269 IGSCPVCNFVVDASLH 284 (288)
Q Consensus 269 ~~~CPvCr~~i~~~v~ 284 (288)
...||+|..++..+..
T Consensus 171 p~~CP~C~~~k~~f~~ 186 (191)
T 1lko_A 171 PELCPACAHPKAHFEL 186 (191)
T ss_dssp CSBCTTTCCBGGGEEE
T ss_pred CCCCCCCcCCHHHHHh
Confidence 5699999999887754
No 158
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=31.38 E-value=1.2e+02 Score=26.70 Aligned_cols=39 Identities=10% Similarity=0.068 Sum_probs=13.2
Q ss_pred ccchHHHHHHHHhh---hHHHHHHHHHhHHHHHHHHHHHHHHH
Q 023064 76 SLLDQDIIFRLQQQ---QSEIDRYIAQHTEKVILELEEQRKRQ 115 (288)
Q Consensus 76 s~~~~~l~~~l~~Q---~~EiD~~i~~q~Erlr~~L~e~r~r~ 115 (288)
+..+.+-.++...+ ..|++.+ ..+.+.|...+++.+.+.
T Consensus 41 ~e~~~~~~~~~~~~~~~~~e~~~l-~~~l~~l~~e~~el~d~~ 82 (213)
T 4ani_A 41 EEAGGEEAAEPAEKAPTAEELAAA-KAQIAELEAKLSEMEHRY 82 (213)
T ss_dssp -----------------CCHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred hhccccccCCccccccchhHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 33344344444433 2455543 445566666665555443
No 159
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=31.11 E-value=95 Score=23.10 Aligned_cols=34 Identities=18% Similarity=0.114 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 023064 141 MRKLNWVLQERVKSLFVENQIWRDLAQTNEATAN 174 (288)
Q Consensus 141 a~r~n~eLEErlrql~~E~qaWq~~A~~nEa~A~ 174 (288)
.+.+..+++.++..|..||..-+.....-+....
T Consensus 34 rk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~ 67 (78)
T 1gu4_A 34 AKMRNLETQHKVLELTAENERLQKKVEQLSRELS 67 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667888888999999888766544333333
No 160
>2f23_A Anti-cleavage anti-GREA transcription factor GFH1; anti-GREA GFH1 thermus thermophilus; 1.60A {Thermus thermophilus} SCOP: a.2.1.1 d.26.1.2 PDB: 2eul_A 3aoh_X* 3aoi_X* 2etn_A
Probab=30.66 E-value=92 Score=25.49 Aligned_cols=19 Identities=16% Similarity=0.295 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 023064 137 EIHRMRKLNWVLQERVKSL 155 (288)
Q Consensus 137 Eie~a~r~n~eLEErlrql 155 (288)
|.+.++.+...+|.|++.|
T Consensus 47 ey~aak~~q~~~e~ri~~L 65 (156)
T 2f23_A 47 GLEAAKQEKARIEARIDSL 65 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444433
No 161
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=30.23 E-value=1e+02 Score=21.24 Aligned_cols=26 Identities=23% Similarity=0.245 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023064 136 EEIHRMRKLNWVLQERVKSLFVENQI 161 (288)
Q Consensus 136 ~Eie~a~r~n~eLEErlrql~~E~qa 161 (288)
.+++.++..|.+|..++..|..+.+.
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~e 44 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKK 44 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666655555443
No 162
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=29.72 E-value=17 Score=31.53 Aligned_cols=16 Identities=25% Similarity=0.513 Sum_probs=13.4
Q ss_pred CCCCccccccccceEE
Q 023064 269 IGSCPVCNFVVDASLH 284 (288)
Q Consensus 269 ~~~CPvCr~~i~~~v~ 284 (288)
...||+|..++..+..
T Consensus 186 p~~CP~C~~~k~~F~~ 201 (202)
T 1yuz_A 186 FEKCPICFRPKDTFTA 201 (202)
T ss_dssp CSBCTTTCCBGGGCEE
T ss_pred CCCCCCCCCChHHhee
Confidence 5799999999887765
No 163
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=29.67 E-value=4.4e+02 Score=26.41 Aligned_cols=78 Identities=15% Similarity=0.123 Sum_probs=37.3
Q ss_pred hHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHH--HHHHHHHHHHhHHHHHHhhHHHHHHH-HHHHHHHHHHHHHH
Q 023064 79 DQDIIFRLQQQQSEIDRYIAQHTEKVILELEEQRKRQ--SRMLISAIQEGVANKLKEKDEEIHRM-RKLNWVLQERVKSL 155 (288)
Q Consensus 79 ~~~l~~~l~~Q~~EiD~~i~~q~Erlr~~L~e~r~r~--~r~ll~avE~~~~~rLReKe~Eie~a-~r~n~eLEErlrql 155 (288)
|=.|-.-|.+|..+|...| ++||..|++..+-+ +-+++..+-....+++.+-. +.+.. ..-..||+.++.-|
T Consensus 48 GCrLQglLdkqErDltkrI----NELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~-dNdNtynE~S~ELRRrIqyL 122 (562)
T 3ghg_A 48 GCRMKGLIDEVNQDFTNRI----NKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSAN-NRDNTYNRVSEDLRSRIEVL 122 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHH-HHHHHHHHTTHHHHHHHHHH
T ss_pred ccchhhhHHhhcCcHHHHH----HHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhh-ccchhHHHHHHHHHHHHHHH
Confidence 4345555677776666554 56666666652222 22222333333334444433 23332 22223677766666
Q ss_pred HHHHHH
Q 023064 156 FVENQI 161 (288)
Q Consensus 156 ~~E~qa 161 (288)
..+.+.
T Consensus 123 KekVdn 128 (562)
T 3ghg_A 123 KRKVIE 128 (562)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655544
No 164
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=28.97 E-value=25 Score=24.27 Aligned_cols=14 Identities=21% Similarity=0.513 Sum_probs=7.4
Q ss_pred CCccccccccceEE
Q 023064 271 SCPVCNFVVDASLH 284 (288)
Q Consensus 271 ~CPvCr~~i~~~v~ 284 (288)
.||+|...+..+..
T Consensus 37 ~CP~Cg~~K~~F~~ 50 (52)
T 1yk4_A 37 VCPLCGAPKSEFER 50 (52)
T ss_dssp BCTTTCCBGGGEEE
T ss_pred cCCCCCCCHHHcEE
Confidence 45555555555443
No 165
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=28.78 E-value=1.5e+02 Score=20.69 Aligned_cols=31 Identities=16% Similarity=0.004 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 023064 143 KLNWVLQERVKSLFVENQIWRDLAQTNEATA 173 (288)
Q Consensus 143 r~n~eLEErlrql~~E~qaWq~~A~~nEa~A 173 (288)
..+.+|+..+..|..++...+.....-+...
T Consensus 23 ~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~ 53 (63)
T 2wt7_A 23 ELTDTLQAETDQLEDEKSALQTEIANLLKEK 53 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3477899999999999999877654433333
No 166
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=28.68 E-value=2.2e+02 Score=22.50 Aligned_cols=25 Identities=16% Similarity=0.299 Sum_probs=15.9
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHH
Q 023064 130 KLKEKDEEIHRMRKLNWVLQERVKS 154 (288)
Q Consensus 130 rLReKe~Eie~a~r~n~eLEErlrq 154 (288)
|.=.-|.|++.++.++.+|..+|..
T Consensus 12 ~~~~~e~e~~~l~~~~~el~~~l~~ 36 (125)
T 1joc_A 12 RCLKGEGEIEKLQTKVLELQRKLDN 36 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3334455777777777777766643
No 167
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=28.46 E-value=1.6e+02 Score=20.85 Aligned_cols=14 Identities=50% Similarity=0.745 Sum_probs=7.2
Q ss_pred HhhHHHHHHHHHHH
Q 023064 132 KEKDEEIHRMRKLN 145 (288)
Q Consensus 132 ReKe~Eie~a~r~n 145 (288)
-+||.||+|.++..
T Consensus 35 ~e~eQEieRL~~LL 48 (58)
T 3a2a_A 35 SEKEQEIERLNKLL 48 (58)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34555555555443
No 168
>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A
Probab=28.32 E-value=61 Score=22.39 Aligned_cols=23 Identities=26% Similarity=0.435 Sum_probs=18.5
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHH
Q 023064 128 ANKLKEKDEEIHRMRKLNWVLQE 150 (288)
Q Consensus 128 ~~rLReKe~Eie~a~r~n~eLEE 150 (288)
-+++++.|.++-+++++++.||+
T Consensus 13 Rkk~eeler~lrk~kk~iKklEd 35 (50)
T 1a92_A 13 RKKLEELERDLRKLKKKIKKLEE 35 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhc
Confidence 35677888888888888888886
No 169
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=28.16 E-value=22 Score=24.84 Aligned_cols=13 Identities=31% Similarity=0.667 Sum_probs=5.8
Q ss_pred CCccccccccceE
Q 023064 271 SCPVCNFVVDASL 283 (288)
Q Consensus 271 ~CPvCr~~i~~~v 283 (288)
.||+|...+..+.
T Consensus 38 ~CP~Cg~~K~~F~ 50 (54)
T 4rxn_A 38 VCPLCGVGKDEFE 50 (54)
T ss_dssp BCTTTCCBGGGEE
T ss_pred cCcCCCCcHHHce
Confidence 4444444444433
No 170
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=28.14 E-value=4.3e+02 Score=25.81 Aligned_cols=87 Identities=15% Similarity=0.174 Sum_probs=0.0
Q ss_pred hHHHHHHHHhhhHH-----HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhH-------HHHHHHHHHHH
Q 023064 79 DQDIIFRLQQQQSE-----IDRYIAQHTEKVILELEEQRKRQSRMLISAIQEGVANKLKEKD-------EEIHRMRKLNW 146 (288)
Q Consensus 79 ~~~l~~~l~~Q~~E-----iD~~i~~q~Erlr~~L~e~r~r~~r~ll~avE~~~~~rLReKe-------~Eie~a~r~n~ 146 (288)
.+.+...+++-+.+ ||.++.+..++-.. ...-...++--.++...+++..+.++ ++.+.+..+..
T Consensus 50 ~~~v~~~l~~R~~~~~~~~~~~~~~ld~~~r~~---~~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~ 126 (501)
T 1wle_A 50 PEDAARALDLRKGELRSKDLPGIISTWQELRQL---REQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGR 126 (501)
T ss_dssp HHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcchhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhcCccccccccccHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 023064 147 VLQERVKSLFVENQIWRDLAQT 168 (288)
Q Consensus 147 eLEErlrql~~E~qaWq~~A~~ 168 (288)
+|.++++.+..+...-...-..
T Consensus 127 ~l~~~i~~l~~~~~~~~~~l~~ 148 (501)
T 1wle_A 127 EIRKQLTLLYPKEAQLEEQFYL 148 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
No 171
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=27.93 E-value=23 Score=25.16 Aligned_cols=37 Identities=24% Similarity=0.728 Sum_probs=22.3
Q ss_pred ccccccccccceE--Ee-CCCCcccCcchhhhc---CCCCcccc
Q 023064 239 LCRRCGEKESSVL--LL-PCRHLCLCTVCGSCL---IGSCPVCN 276 (288)
Q Consensus 239 ~C~iC~~~~~~vl--Ll-PCrHlclC~~C~~~l---~~~CPvCr 276 (288)
.|-.|...-.+.- -- -|++. .|.+|...+ +..||.|.
T Consensus 17 ~C~~C~~~~~~~~~y~C~~C~~~-FC~dCD~fiHe~Lh~CPgC~ 59 (59)
T 1z60_A 17 FCYGCQGELKDQHVYVCAVCQNV-FCVDCDVFVHDSLHSCPGCI 59 (59)
T ss_dssp EETTTTEECTTSEEECCTTTTCC-BCHHHHHTTTTTSCSSSTTC
T ss_pred cccccCcccCCCccEECCccCcC-cccchhHHHHhhccCCcCCC
Confidence 4666665433221 11 13333 789998877 89999983
No 172
>1grj_A GREA protein; transcript elongation factor, transcript cleavage factor, transcription regulation; 2.20A {Escherichia coli} SCOP: a.2.1.1 d.26.1.2
Probab=27.88 E-value=1.3e+02 Score=24.62 Aligned_cols=19 Identities=26% Similarity=0.394 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 023064 137 EIHRMRKLNWVLQERVKSL 155 (288)
Q Consensus 137 Eie~a~r~n~eLEErlrql 155 (288)
|-..++++-..+|.|++.|
T Consensus 47 eY~aak~~q~~~e~ri~~L 65 (158)
T 1grj_A 47 EYHAAREQQGFCEGRIKDI 65 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHH
Confidence 3344444444444444443
No 173
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=27.86 E-value=4.1e+02 Score=25.42 Aligned_cols=25 Identities=16% Similarity=0.244 Sum_probs=11.6
Q ss_pred HHHHHHHhhHHHHHHHHHhHHHHHH
Q 023064 161 IWRDLAQTNEATANTLRSNLEQVLA 185 (288)
Q Consensus 161 aWq~~A~~nEa~A~~Lra~L~q~l~ 185 (288)
.-+..-.+++.....|+..+.++..
T Consensus 109 ~l~~~~~~~~~~i~~l~~~i~~l~~ 133 (409)
T 1m1j_C 109 QLTDMHIMNSNKITQLKQKIAQLES 133 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3333444455555555544444443
No 174
>1yzm_A FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB GTPase, vesicular trafficking, protein transport; 1.50A {Homo sapiens} SCOP: a.2.19.1
Probab=27.83 E-value=1.2e+02 Score=21.00 Aligned_cols=42 Identities=12% Similarity=0.231 Sum_probs=22.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHH
Q 023064 97 IAQHTEKVILELEEQRKRQSRMLISAIQEGVANKLKEKDEEIHRMR 142 (288)
Q Consensus 97 i~~q~Erlr~~L~e~r~r~~r~ll~avE~~~~~rLReKe~Eie~a~ 142 (288)
+..|..-++..|+++++.----=|..+|. =||+.+.||++..
T Consensus 7 L~EQ~~~I~~~I~qAk~~~r~DEV~~Le~----NLrEL~~ei~~~~ 48 (51)
T 1yzm_A 7 LLQQIHNITSFIRQAKAAGRMDEVRTLQE----NLRQLQDEYDQQQ 48 (51)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCcHHHHHHHH----HHHHHHHHHHHHh
Confidence 34455566666666665433333444442 2566666666543
No 175
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=27.34 E-value=22 Score=24.49 Aligned_cols=8 Identities=38% Similarity=1.020 Sum_probs=3.9
Q ss_pred cccccccc
Q 023064 238 MLCRRCGE 245 (288)
Q Consensus 238 ~~C~iC~~ 245 (288)
..|.+|..
T Consensus 37 w~CP~Cg~ 44 (52)
T 1e8j_A 37 WACPVCGA 44 (52)
T ss_dssp CCCSSSCC
T ss_pred CcCCCCCC
Confidence 34555544
No 176
>1jad_A PLC-beta, phospholipase C beta; alpha helical coiled coil, hydrolase; 2.40A {Meleagris gallopavo} SCOP: h.4.10.1
Probab=27.00 E-value=3.5e+02 Score=24.36 Aligned_cols=91 Identities=19% Similarity=0.157 Sum_probs=62.5
Q ss_pred HHHHhhhHHHHHHHHHh-----------HHHHH---------HHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHH
Q 023064 84 FRLQQQQSEIDRYIAQH-----------TEKVI---------LELEEQRKRQSRMLISAIQEGVANKLKEKDEEIHRMRK 143 (288)
Q Consensus 84 ~~l~~Q~~EiD~~i~~q-----------~Erlr---------~~L~e~r~r~~r~ll~avE~~~~~rLReKe~Eie~a~r 143 (288)
-.+.+|..|+|-|-+-| +.++- ..+.+....|...|+..++ ++-++|.+.-..
T Consensus 32 Kl~KKQqKEl~~LkKKH~Ke~~~lqK~~~~~~~~~s~~~~~~~kv~el~~~q~~el~~l~~-------~q~~eE~~~k~~ 104 (251)
T 1jad_A 32 KLLKKQEKELKELERKGSKRREELLQKYSVLFLEPVYPRGLDSQVVELKERLEMELIHLGE-------EYHDGIRRRKEQ 104 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCSSSSCHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Confidence 35678888888887733 33331 2345667777777776666 445678888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHhHH
Q 023064 144 LNWVLQERVKSLFVENQIWRDLAQT--NEATANTLRSNLE 181 (288)
Q Consensus 144 ~n~eLEErlrql~~E~qaWq~~A~~--nEa~A~~Lra~L~ 181 (288)
++.+.-++|+.|..++|+=|-.+.. +|.-...|+..++
T Consensus 105 Hl~eq~~~Lk~l~~e~Q~~QmK~Lk~~~ErE~KELkk~q~ 144 (251)
T 1jad_A 105 HATEQTAKITELAREKQIAELKALKESSESNIKDIKKKLE 144 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999998877653 3443334555543
No 177
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=26.88 E-value=25 Score=24.56 Aligned_cols=14 Identities=21% Similarity=0.268 Sum_probs=8.2
Q ss_pred CCccccccccceEE
Q 023064 271 SCPVCNFVVDASLH 284 (288)
Q Consensus 271 ~CPvCr~~i~~~v~ 284 (288)
.||+|...+..+..
T Consensus 38 ~CP~Cga~K~~F~~ 51 (55)
T 2v3b_B 38 VCPDCGVGKIDFEM 51 (55)
T ss_dssp CCTTTCCCGGGEEE
T ss_pred cCCCCCCCHHHcee
Confidence 56666666555544
No 178
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=26.58 E-value=54 Score=29.75 Aligned_cols=32 Identities=19% Similarity=0.172 Sum_probs=26.4
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023064 128 ANKLKEKDEEIHRMRKLNWVLQERVKSLFVEN 159 (288)
Q Consensus 128 ~~rLReKe~Eie~a~r~n~eLEErlrql~~E~ 159 (288)
..|+++++.+++.+..+|..|.+-++.+..|.
T Consensus 53 ~~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El 84 (251)
T 3m9b_A 53 ARDIHQLEARIDSLAARNSKLMETLKEARQQL 84 (251)
T ss_dssp CHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788889999999999988988888877554
No 179
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=26.37 E-value=2.1e+02 Score=21.56 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=16.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 023064 134 KDEEIHRMRKLNWVLQERVKSLF 156 (288)
Q Consensus 134 Ke~Eie~a~r~n~eLEErlrql~ 156 (288)
++.|+++..-....|++|++.+-
T Consensus 53 L~~en~qLk~E~~~wq~Rl~~LL 75 (81)
T 2jee_A 53 LERENNHLKEQQNGWQERLQALL 75 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55577777777777777777664
No 180
>1z0j_B FYVE-finger-containing RAB5 effector protein RABE, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Homo sapiens} SCOP: a.2.19.1
Probab=26.11 E-value=1.3e+02 Score=21.53 Aligned_cols=44 Identities=9% Similarity=0.200 Sum_probs=27.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHH
Q 023064 95 RYIAQHTEKVILELEEQRKRQSRMLISAIQEGVANKLKEKDEEIHRMR 142 (288)
Q Consensus 95 ~~i~~q~Erlr~~L~e~r~r~~r~ll~avE~~~~~rLReKe~Eie~a~ 142 (288)
..+..|...++..|.++++.----=|..++. =||+.+.|+.+..
T Consensus 12 dpL~EQi~~I~~yI~qAk~~~R~DEV~~Le~----NLrEL~~ei~~~~ 55 (59)
T 1z0j_B 12 ELLLQQIDNIKAYIFDAKQCGRLDEVEVLTE----NLRELKHTLAKQK 55 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCHHHHHHHHH----HHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHHHHcCChHHHHHHHH----HHHHHHHHHHHHh
Confidence 3566777777888877775544344444443 3677766666554
No 181
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=26.10 E-value=38 Score=26.35 Aligned_cols=44 Identities=23% Similarity=0.609 Sum_probs=30.0
Q ss_pred cccccccccc----ccceEEeCCCCc--ccCcchhhhc----CCCCcccccccc
Q 023064 237 RMLCRRCGEK----ESSVLLLPCRHL--CLCTVCGSCL----IGSCPVCNFVVD 280 (288)
Q Consensus 237 ~~~C~iC~~~----~~~vlLlPCrHl--clC~~C~~~l----~~~CPvCr~~i~ 280 (288)
...|.||.+. .-.=+|+-|..- .+|..|..-- ...||-|.....
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 3579999885 222256666543 5788886543 789999998765
No 182
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=26.02 E-value=2.2e+02 Score=21.71 Aligned_cols=54 Identities=15% Similarity=0.216 Sum_probs=31.0
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhhHHHHHHHHHhHHH
Q 023064 129 NKLKEKDEEIHRMRKLNWVLQERVKSLFVENQIWR-------DLAQTNEATANTLRSNLEQ 182 (288)
Q Consensus 129 ~rLReKe~Eie~a~r~n~eLEErlrql~~E~qaWq-------~~A~~nEa~A~~Lra~L~q 182 (288)
.+.-+++.||..+++++..||+-+.++...-..=+ ..+...|+-+.+|...++.
T Consensus 37 ~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~Rriql 97 (101)
T 3u1c_A 37 ERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRRIQL 97 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456777888888888777776655443333222 2334445566666655543
No 183
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=25.97 E-value=2.5e+02 Score=22.33 Aligned_cols=48 Identities=15% Similarity=0.132 Sum_probs=28.2
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhhHHHHHHHHHh
Q 023064 132 KEKDEEIHRMRKLNWVLQERVKSLFVE----NQIWRDLAQTNEATANTLRSN 179 (288)
Q Consensus 132 ReKe~Eie~a~r~n~eLEErlrql~~E----~qaWq~~A~~nEa~A~~Lra~ 179 (288)
|+..+++++...--.+||+.|..-..+ .+.-+..++.+|..-..|+..
T Consensus 16 ~ql~~qL~k~~~~r~~Le~~w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~ 67 (112)
T 1x79_B 16 RQANDQLEKTMKDKQELEDFIKQSSEDSSHQISALVLRAQASEILLEELQQG 67 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444457777777777888776554433 344555555566554444433
No 184
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=25.79 E-value=4.1e+02 Score=26.23 Aligned_cols=62 Identities=11% Similarity=0.096 Sum_probs=34.0
Q ss_pred HHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 023064 83 IFRLQQQQSEIDRYIAQHTEKVILELEEQRKRQSRMLISAIQEGVANKLKEKDEEIHRMRKLNWVLQERVK 153 (288)
Q Consensus 83 ~~~l~~Q~~EiD~~i~~q~Erlr~~L~e~r~r~~r~ll~avE~~~~~rLReKe~Eie~a~r~n~eLEErlr 153 (288)
..+-+.|..+.|..+..-.+.|+.-+ .-|-..|...+ .+||....-|+....+...||.-|.
T Consensus 95 lk~~~~q~~dndn~~~e~S~eLe~ri--------~yIK~kVd~qi-~~IrvLq~~l~~q~skIQRLE~dI~ 156 (491)
T 1m1j_A 95 LKPGLEGAQQLDENYGHVSTELRRRI--------VTLKQRVATQV-NRIKALQNSIQEQVVEMKRLEVDID 156 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhccchhHHHHHHHHHHHHH--------HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455554444444444333 33445556555 6667666677777776666665553
No 185
>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} SCOP: a.2.19.1
Probab=25.72 E-value=1.1e+02 Score=22.40 Aligned_cols=39 Identities=10% Similarity=0.212 Sum_probs=19.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHH
Q 023064 100 HTEKVILELEEQRKRQSRMLISAIQEGVANKLKEKDEEIHRMR 142 (288)
Q Consensus 100 q~Erlr~~L~e~r~r~~r~ll~avE~~~~~rLReKe~Eie~a~ 142 (288)
|..-++..|+++|+.----=|..+|. =|||.+.||++..
T Consensus 28 Q~~~I~~yI~qAk~~~r~DEV~tLe~----NLrEL~~ei~~~q 66 (69)
T 1z0k_B 28 QIHNITSFIRQAKAAGRMDEVRTLQE----NLRQLQDEYDQQQ 66 (69)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHH----HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHH----HHHHHHHHHHHHh
Confidence 34444455555554333333344443 3666666666543
No 186
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=24.96 E-value=2.3e+02 Score=21.48 Aligned_cols=53 Identities=19% Similarity=0.132 Sum_probs=30.3
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhhHHHHHHHHHhHHHH
Q 023064 131 LKEKDEEIHRMRKLNWVLQERVKSLFVENQI-------WRDLAQTNEATANTLRSNLEQV 183 (288)
Q Consensus 131 LReKe~Eie~a~r~n~eLEErlrql~~E~qa-------Wq~~A~~nEa~A~~Lra~L~q~ 183 (288)
..+++.||..+.+++..||+-+..+...... =...+...|+-+.+|..-++.+
T Consensus 39 ~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRriqll 98 (101)
T 3u59_A 39 CKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRRIQLV 98 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777777666655443322221 2334555677777787766543
No 187
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=24.66 E-value=32 Score=26.06 Aligned_cols=17 Identities=29% Similarity=0.393 Sum_probs=13.7
Q ss_pred CCCccccccccceEEEe
Q 023064 270 GSCPVCNFVVDASLHVN 286 (288)
Q Consensus 270 ~~CPvCr~~i~~~v~V~ 286 (288)
..||+|...+..+..|-
T Consensus 61 W~CPvCga~K~~F~~i~ 77 (81)
T 2kn9_A 61 WSCPDCGAAKSDFEMVE 77 (81)
T ss_dssp CCCTTTCCCGGGEEEEC
T ss_pred CcCCCCCCCHHHcEEcc
Confidence 37999999988887763
No 188
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1
Probab=24.62 E-value=4.4e+02 Score=26.52 Aligned_cols=33 Identities=9% Similarity=-0.043 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023064 136 EEIHRMRKLNWVLQERVKSLFVENQIWRDLAQT 168 (288)
Q Consensus 136 ~Eie~a~r~n~eLEErlrql~~E~qaWq~~A~~ 168 (288)
.+.+.+..+..+|.++|.+|......++..-..
T Consensus 443 ~~~~~I~~~~~~l~~~W~~L~~~~~~R~~~L~~ 475 (863)
T 1sjj_A 443 YDSPSVNARCQKICDQWDNLGALTQKRREALER 475 (863)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344667788888888998888888877766543
No 189
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=24.07 E-value=2.8e+02 Score=22.23 Aligned_cols=10 Identities=0% Similarity=0.212 Sum_probs=4.4
Q ss_pred HHHHHHHHHH
Q 023064 135 DEEIHRMRKL 144 (288)
Q Consensus 135 e~Eie~a~r~ 144 (288)
|.|++.++++
T Consensus 67 e~E~ae~k~K 76 (115)
T 3vem_A 67 ERKMAEVQAE 76 (115)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 190
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=22.83 E-value=53 Score=32.72 Aligned_cols=49 Identities=18% Similarity=0.309 Sum_probs=9.0
Q ss_pred HHHHHhhHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 023064 128 ANKLKEKDEEIHRMR-------KLNWVLQERVKSLFVENQIWRDLAQTNEATANTL 176 (288)
Q Consensus 128 ~~rLReKe~Eie~a~-------r~n~eLEErlrql~~E~qaWq~~A~~nEa~A~~L 176 (288)
..||++.++|..+++ ....+|+|.++.+..|..--...+.+.|.+-..|
T Consensus 341 ~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e~~~l~~~~~~~e~~~~~l 396 (575)
T 2i1j_A 341 QDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKEELEQRQNELQAMMQRL 396 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC--------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355565555555554 4445566666666666666666555555544433
No 191
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=22.80 E-value=33 Score=23.19 Aligned_cols=13 Identities=38% Similarity=0.807 Sum_probs=8.9
Q ss_pred CCccccccccceE
Q 023064 271 SCPVCNFVVDASL 283 (288)
Q Consensus 271 ~CPvCr~~i~~~v 283 (288)
.||+|...+..+.
T Consensus 32 ~CP~Cg~~k~~F~ 44 (46)
T 6rxn_A 32 CCPVCGVSKDQFS 44 (46)
T ss_dssp BCTTTCCBGGGEE
T ss_pred cCcCCCCcHHHcE
Confidence 6777777766654
No 192
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=22.63 E-value=32 Score=25.18 Aligned_cols=15 Identities=20% Similarity=0.519 Sum_probs=10.2
Q ss_pred CCccccccccceEEE
Q 023064 271 SCPVCNFVVDASLHV 285 (288)
Q Consensus 271 ~CPvCr~~i~~~v~V 285 (288)
.||+|...+..+..+
T Consensus 42 ~CP~Cga~K~~F~~~ 56 (70)
T 1dx8_A 42 MCPACRSPKNQFKSI 56 (70)
T ss_dssp BCTTTCCBGGGEEEC
T ss_pred cCCCCCCCHHHceEc
Confidence 677777777666554
No 193
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=22.28 E-value=2.8e+02 Score=21.51 Aligned_cols=13 Identities=15% Similarity=0.491 Sum_probs=6.6
Q ss_pred HHHhhhHHHHHHH
Q 023064 85 RLQQQQSEIDRYI 97 (288)
Q Consensus 85 ~l~~Q~~EiD~~i 97 (288)
+|-+|..|+.-.+
T Consensus 22 eL~kQk~eL~~~l 34 (101)
T 1d7m_A 22 QLIKQKDQLNSLL 34 (101)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3445555555444
No 194
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=22.25 E-value=2.5e+02 Score=20.98 Aligned_cols=26 Identities=8% Similarity=0.096 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023064 137 EIHRMRKLNWVLQERVKSLFVENQIW 162 (288)
Q Consensus 137 Eie~a~r~n~eLEErlrql~~E~qaW 162 (288)
-++.+..+|.+||++|+.+...-+.=
T Consensus 14 klq~~E~rN~~Le~~v~~le~~Le~s 39 (79)
T 3cvf_A 14 KVQDLETRNAELEHQLRAMERSLEEA 39 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 34445667888888888877655443
No 195
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=22.07 E-value=2.6e+02 Score=21.19 Aligned_cols=20 Identities=20% Similarity=0.287 Sum_probs=12.3
Q ss_pred HHhhHHHHHHHHHHHHHHHH
Q 023064 131 LKEKDEEIHRMRKLNWVLQE 150 (288)
Q Consensus 131 LReKe~Eie~a~r~n~eLEE 150 (288)
|..-+.+|++..++..+|+.
T Consensus 60 i~~le~~i~rhk~~i~~l~~ 79 (84)
T 1gmj_A 60 IERLQKEIERHKQSIKKLKQ 79 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 45555667777666666653
No 196
>1xaw_A Occludin; coiled-coil, cell adhesion; 1.45A {Homo sapiens} SCOP: h.4.17.1 PDB: 1wpa_A 3g7c_A
Probab=22.04 E-value=1.9e+02 Score=23.87 Aligned_cols=58 Identities=16% Similarity=0.217 Sum_probs=29.2
Q ss_pred hHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHhhHHHHHHHHHhHHHHHHhc
Q 023064 126 GVANKLKEKDEEIHRMRKLNWVLQERVKSLFVENQIWRDL-----AQTNEATANTLRSNLEQVLAHV 187 (288)
Q Consensus 126 ~~~~rLReKe~Eie~a~r~n~eLEErlrql~~E~qaWq~~-----A~~nEa~A~~Lra~L~q~l~q~ 187 (288)
+|.+++.+.+.+|.+...-.. ....+..|-.-|+.+ -++....-..|++.|-++....
T Consensus 70 ~v~~~F~~Ld~~L~~l~~~s~----e~~~i~~EY~r~k~~K~dp~y~ekK~Rc~yL~~KLsHIK~lI 132 (140)
T 1xaw_A 70 EINKELSRLDKELDDYREESE----EYMAAADEYNRLKQVKGSADYKSKKNHCKQLKSKLSHIKKMV 132 (140)
T ss_dssp HHHHHHHHHHHHHHHSCTTSH----HHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCH----HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677777777766532221 122333344443322 1222234458888888776543
No 197
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=21.77 E-value=1.2e+02 Score=23.93 Aligned_cols=25 Identities=28% Similarity=0.437 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 023064 139 HRMRKLNWVLQERVKSLFVENQIWR 163 (288)
Q Consensus 139 e~a~r~n~eLEErlrql~~E~qaWq 163 (288)
++...++..|.+++.++..|-..|+
T Consensus 92 ~~e~~~~~~L~~~i~~Le~el~~~R 116 (117)
T 3kin_B 92 EKEKEKNKALKSVIQHLEVELNRWR 116 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3334445566666666666766665
No 198
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=21.69 E-value=80 Score=24.58 Aligned_cols=22 Identities=18% Similarity=0.471 Sum_probs=9.7
Q ss_pred HHhhHHHHHHHHHHHHHHHHHH
Q 023064 131 LKEKDEEIHRMRKLNWVLQERV 152 (288)
Q Consensus 131 LReKe~Eie~a~r~n~eLEErl 152 (288)
+++.++++..++++..+|++.+
T Consensus 9 ~~~l~~~~~~l~~~i~~lkeel 30 (109)
T 2wg5_A 9 MKQLEDKVEELLSKNYHLENEV 30 (109)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444333
No 199
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=21.54 E-value=88 Score=22.82 Aligned_cols=18 Identities=22% Similarity=0.584 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 023064 137 EIHRMRKLNWVLQERVKS 154 (288)
Q Consensus 137 Eie~a~r~n~eLEErlrq 154 (288)
|++.++++|.+|+.++..
T Consensus 62 e~~~L~~~~~~L~~~l~~ 79 (83)
T 1nkp_B 62 DIDDLKRQNALLEQQVRA 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455555555555555443
No 200
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=21.27 E-value=1.3e+02 Score=27.67 Aligned_cols=37 Identities=14% Similarity=0.177 Sum_probs=27.8
Q ss_pred HhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023064 125 EGVANKLKEKDEEIHRMRKLNWVLQERVKSLFVENQI 161 (288)
Q Consensus 125 ~~~~~rLReKe~Eie~a~r~n~eLEErlrql~~E~qa 161 (288)
....+....++.|++.+...+.+|++.+..+..+...
T Consensus 174 ~~~~~~~n~~~~eie~L~~~~~~L~eEi~~Le~~~e~ 210 (315)
T 2ve7_A 174 SKLKDLFNVDAFKLESLEAKNRALNEQIARLEQERST 210 (315)
T ss_dssp HHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444556789999999999999999999766543
No 201
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=21.20 E-value=3.6e+02 Score=22.44 Aligned_cols=53 Identities=15% Similarity=0.167 Sum_probs=25.1
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHH
Q 023064 131 LKEKDEEIHRMRKLNWVLQERVKSLFVENQIWRDLAQTNEATANTLRSNLEQV 183 (288)
Q Consensus 131 LReKe~Eie~a~r~n~eLEErlrql~~E~qaWq~~A~~nEa~A~~Lra~L~q~ 183 (288)
|+..+.--+++..+-..++++|+.|..-...=-.+|...|..+..|..+++.+
T Consensus 58 lKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~l 110 (155)
T 2efr_A 58 LKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDL 110 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444455555554444444445555555555555555443
No 202
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=21.08 E-value=54 Score=28.96 Aligned_cols=44 Identities=18% Similarity=0.250 Sum_probs=26.5
Q ss_pred ccccccccccccceEEeC-CCCcccCcchhhhc-----CCCCccccccccc
Q 023064 237 RMLCRRCGEKESSVLLLP-CRHLCLCTVCGSCL-----IGSCPVCNFVVDA 281 (288)
Q Consensus 237 ~~~C~iC~~~~~~vlLlP-CrHlclC~~C~~~l-----~~~CPvCr~~i~~ 281 (288)
...|.+|++--.--...| |+|. +=..|.... ...||.|+.....
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~-~H~~C~~~~~~~~~~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIR-MHLPCVAKYFQSNAEPRCPHCNDYWPH 229 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCE-ECHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred CCcCcchhhHHhCCcccCccChH-HHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence 457999987655444433 4443 334455442 3599999987654
No 203
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=21.03 E-value=1.2e+02 Score=25.81 Aligned_cols=33 Identities=36% Similarity=0.541 Sum_probs=21.7
Q ss_pred HhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 023064 87 QQQQSEIDRYIAQHTEKVILELEEQRKRQSRML 119 (288)
Q Consensus 87 ~~Q~~EiD~~i~~q~Erlr~~L~e~r~r~~r~l 119 (288)
.+|+.++++-++.+.|+|.+.|+..+.-|..+|
T Consensus 228 ~~~~~~~~~~~~~~~e~l~~~~~~~~~~~~~~~ 260 (261)
T 3sde_A 228 KQQREQVDRNIREAKEKLEAEMEAARHEHQLML 260 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhc
Confidence 445567777777777777777777766665443
No 204
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=21.01 E-value=1.4e+02 Score=21.73 Aligned_cols=12 Identities=50% Similarity=0.886 Sum_probs=5.0
Q ss_pred HHhhHHHHHHHH
Q 023064 131 LKEKDEEIHRMR 142 (288)
Q Consensus 131 LReKe~Eie~a~ 142 (288)
|++|++||...+
T Consensus 34 L~~kd~eI~eLr 45 (67)
T 1zxa_A 34 LSEKEEEIQELK 45 (67)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444444433
No 205
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=20.82 E-value=4.2e+02 Score=25.06 Aligned_cols=83 Identities=6% Similarity=0.058 Sum_probs=0.0
Q ss_pred hHHHHHHHHhhhHH--HHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 023064 79 DQDIIFRLQQQQSE--IDRYIAQ--HTEKVILELEEQRKRQSRMLISAIQEGVANKLKEKDEEIHRMRKLNWVLQERVKS 154 (288)
Q Consensus 79 ~~~l~~~l~~Q~~E--iD~~i~~--q~Erlr~~L~e~r~r~~r~ll~avE~~~~~rLReKe~Eie~a~r~n~eLEErlrq 154 (288)
.+.+..-+.+-..+ +|.++.+ +--.+...+++.|.+++ .+-+.|..+......+.-+|+..++.+.++||+.++.
T Consensus 11 ~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~n-~~sk~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 89 (421)
T 1ses_A 11 PEVFHRAIREKGVALDLEALLALDREVQELKKRLQEVQTERN-QVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALRE 89 (421)
T ss_dssp HHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHH
Q 023064 155 LFVENQIW 162 (288)
Q Consensus 155 l~~E~qaW 162 (288)
+..+-+..
T Consensus 90 ~~~~~~~~ 97 (421)
T 1ses_A 90 KEARLEAL 97 (421)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
No 206
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=20.30 E-value=5.3e+02 Score=24.01 Aligned_cols=11 Identities=27% Similarity=0.537 Sum_probs=4.5
Q ss_pred HHhhhHHHHHH
Q 023064 86 LQQQQSEIDRY 96 (288)
Q Consensus 86 l~~Q~~EiD~~ 96 (288)
+++.+.++++.
T Consensus 365 l~~~~~~le~~ 375 (487)
T 3oja_A 365 LEQKKKALDEQ 375 (487)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33444444433
No 207
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=20.06 E-value=22 Score=33.98 Aligned_cols=23 Identities=17% Similarity=0.234 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 023064 143 KLNWVLQERVKSLFVENQIWRDL 165 (288)
Q Consensus 143 r~n~eLEErlrql~~E~qaWq~~ 165 (288)
.+..+|||..+++..|-.+|...
T Consensus 373 ~~~~~l~~~~~~~~~~~~~~~~~ 395 (418)
T 2qag_C 373 AQHKELEEKRRQFEDEKANWEAQ 395 (418)
T ss_dssp -----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34457888888888888888654
Done!