Query 023065
Match_columns 288
No_of_seqs 180 out of 351
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 08:11:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023065.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023065hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14299 PP2: Phloem protein 2 100.0 8E-61 1.7E-65 410.9 19.4 148 118-279 1-154 (154)
2 PF12937 F-box-like: F-box-lik 98.6 2.7E-08 5.9E-13 68.6 2.4 44 26-69 1-44 (47)
3 PF00646 F-box: F-box domain; 98.2 2E-07 4.2E-12 64.0 -0.3 45 25-69 2-46 (48)
4 smart00256 FBOX A Receptor for 98.2 1.1E-06 2.4E-11 57.6 3.4 40 29-68 1-40 (41)
5 PF06881 Elongin_A: RNA polyme 93.1 0.077 1.7E-06 43.0 2.7 71 25-99 3-73 (109)
6 KOG3926 F-box proteins [Amino 86.4 0.6 1.3E-05 44.4 2.9 79 22-100 198-279 (332)
7 KOG2997 F-box protein FBX9 [Ge 83.3 0.45 9.7E-06 46.1 0.6 79 26-106 107-194 (366)
8 PLN03215 ascorbic acid mannose 80.0 1.6 3.5E-05 43.0 3.2 38 26-63 4-42 (373)
9 KOG0274 Cdc4 and related F-box 73.5 1.3 2.8E-05 45.7 0.5 53 22-74 104-156 (537)
10 KOG4408 Putative Mg2+ and Co2+ 65.6 1.6 3.5E-05 42.6 -0.6 53 22-74 4-56 (386)
11 PF02018 CBM_4_9: Carbohydrate 61.6 74 0.0016 24.7 11.0 63 173-257 60-124 (131)
12 KOG4114 Cytochrome c oxidase a 53.5 8.6 0.00019 29.3 1.6 32 24-59 36-69 (73)
13 PF13013 F-box-like_2: F-box-l 51.4 13 0.00027 30.6 2.4 46 22-70 18-63 (109)
14 KOG2120 SCF ubiquitin ligase, 51.2 19 0.0004 35.4 3.8 47 23-69 95-141 (419)
15 KOG2944 Glyoxalase [Carbohydra 30.9 65 0.0014 28.5 3.7 77 162-239 84-167 (170)
16 KOG3437 Anaphase-promoting com 28.8 4.3E+02 0.0094 23.8 8.8 36 208-243 87-125 (184)
17 KOG3233 RNA polymerase III, su 26.5 15 0.00032 35.1 -1.1 43 115-165 137-183 (297)
18 KOG0281 Beta-TrCP (transducin 21.2 57 0.0012 32.5 1.7 43 26-68 75-121 (499)
No 1
>PF14299 PP2: Phloem protein 2
Probab=100.00 E-value=8e-61 Score=410.94 Aligned_cols=148 Identities=36% Similarity=0.740 Sum_probs=136.7
Q ss_pred CceEEEEeeccceeecCCCCCceeeeeCCccccccceEEeeeeEEEEeeEEeecC--CCCceEEEEEEEeccccccccce
Q 023065 118 GGVCLSISAKGLAITGIDDRRYWNHIPTEESRFTSVAYLQQIWWFEVDGEVEFPF--PAGTYSIFIRLQLGRASKRFGRR 195 (288)
Q Consensus 118 GkkCymLSAR~L~ItWgdd~~YW~Wi~~peSRF~EVAeL~~VcWLEI~G~i~t~l--p~t~Y~ay~v~kl~~~~~~~~~~ 195 (288)
||||||||||+|+|||||||+||+|+++|+|||.|||||++||||||+|+|++++ |+|+|+||||||+
T Consensus 1 G~~cymlsaR~L~I~Wg~~~~yW~w~~~~~srf~evAeL~~V~WLeI~G~i~~~~Lsp~t~Y~vy~v~kl---------- 70 (154)
T PF14299_consen 1 GKKCYMLSARALSITWGDDPRYWKWIPLPDSRFSEVAELLQVCWLEIRGKINTRMLSPGTTYAVYFVFKL---------- 70 (154)
T ss_pred CCEEEEEEhhhCEEecCCCCcceeeccCCcccceeeeEEEEEEEEEEEEEEEceEcCCCCEEEEEEEEEe----------
Confidence 8999999999999999999999999999999999999999999999999999994 9999999999999
Q ss_pred eeccccccccCCCCeEEEEEecCCce--eeeeeee--cCCCcEEEEEeeeEEEcCCCceeEEEEEEEEeeCCCccceEEE
Q 023065 196 ICSTEHVHGWDRKPVQFQLWTSDGQH--ASSQCIL--NEPGKWVQYHIGDFIVENGNLLTKIKFSMMQIDCTHTKGGLCL 271 (288)
Q Consensus 196 v~~~~~~~Gw~~~Pv~~~l~~~~g~~--~~~~~~l--~~~DgW~EielGEF~~~~~~~~~eV~fsl~E~~~~~wK~GLiV 271 (288)
++++|||+..|+++++++++++. +.+.+.+ .+.|||||||+|||+++++ +++||+|+|+|+++++||+||||
T Consensus 71 ---~~~~~Gw~~~pv~~~v~~~~~~~~~~~~~~~~~~~r~dgW~Eie~GeF~~~~~-~~~ev~f~~~E~~~~~wK~GLiv 146 (154)
T PF14299_consen 71 ---KDDAYGWDSPPVEFSVKVPDGEKYEQERKVCLPKERGDGWMEIELGEFFNEGG-DDGEVEFSMYEVDSGHWKGGLIV 146 (154)
T ss_pred ---cCCCCCCCcCCEEEEEEeCCCccccceeeEEcCCCCCCCEEEEEcceEEecCC-CCcEEEEEEEEecCCcccCeEEE
Confidence 57899999999999999998876 2233333 3469999999999999975 78999999999999999999999
Q ss_pred EEEEEEec
Q 023065 272 DSVLICPS 279 (288)
Q Consensus 272 ~GIeIRPk 279 (288)
+|||||||
T Consensus 147 ~GieIRPK 154 (154)
T PF14299_consen 147 EGIEIRPK 154 (154)
T ss_pred EEEEEecC
Confidence 99999998
No 2
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.58 E-value=2.7e-08 Score=68.57 Aligned_cols=44 Identities=23% Similarity=0.501 Sum_probs=39.7
Q ss_pred CCCcchHHHHHHHhcCChHHHHHHhhccHhhhccccchhhhccC
Q 023065 26 LGDLPESCVALIIGSLDPTEICKLARLNRAFRGASLADFVWESK 69 (288)
Q Consensus 26 ~~~LPe~cia~ils~tsP~Dacr~a~vs~~fr~aa~sD~vW~~f 69 (288)
+.+||+|.+..|+++++|.|.++++.||+.|+.++.++.+|.++
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~~~ 44 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWRRL 44 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHHHH
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhhhh
Confidence 57899999999999999999999999999999999999999875
No 3
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.23 E-value=2e-07 Score=63.99 Aligned_cols=45 Identities=24% Similarity=0.524 Sum_probs=38.9
Q ss_pred CCCCcchHHHHHHHhcCChHHHHHHhhccHhhhccccchhhhccC
Q 023065 25 GLGDLPESCVALIIGSLDPTEICKLARLNRAFRGASLADFVWESK 69 (288)
Q Consensus 25 ~~~~LPe~cia~ils~tsP~Dacr~a~vs~~fr~aa~sD~vW~~f 69 (288)
.|.+||++++.+|++++++.|.++++.||+.|+.+.+++..|.++
T Consensus 2 ~~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~~ 46 (48)
T PF00646_consen 2 PLSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKKI 46 (48)
T ss_dssp HHHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHH
T ss_pred CHHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHHH
Confidence 356899999999999999999999999999999999999999764
No 4
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.23 E-value=1.1e-06 Score=57.63 Aligned_cols=40 Identities=23% Similarity=0.497 Sum_probs=38.5
Q ss_pred cchHHHHHHHhcCChHHHHHHhhccHhhhccccchhhhcc
Q 023065 29 LPESCVALIIGSLDPTEICKLARLNRAFRGASLADFVWES 68 (288)
Q Consensus 29 LPe~cia~ils~tsP~Dacr~a~vs~~fr~aa~sD~vW~~ 68 (288)
||++++..|+++++|.|.+++++||+.||.+.+.+.+|..
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~~ 40 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWFK 40 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhhc
Confidence 7999999999999999999999999999999999999975
No 5
>PF06881 Elongin_A: RNA polymerase II transcription factor SIII (Elongin) subunit A; InterPro: IPR010684 This family represents a conserved region within RNA polymerase II transcription factor SIII (Elongin) subunit A. In mammals, the Elongin complex activates elongation by RNA polymerase II by suppressing transient pausing of the polymerase at many sites within transcription units. Elongin is a heterotrimer composed of A, B, and C subunits of 110, 18, and 15 kilodaltons, respectively. Subunit A has been shown to function as the transcriptionally active component of Elongin [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus, 0016021 integral to membrane
Probab=93.10 E-value=0.077 Score=43.03 Aligned_cols=71 Identities=18% Similarity=0.323 Sum_probs=57.0
Q ss_pred CCCCcchHHHHHHHhcCChHHHHHHhhccHhhhccccchhhhccCCCCCchhhhhhhhcCCCCCCcHHHHHHHhh
Q 023065 25 GLGDLPESCVALIIGSLDPTEICKLARLNRAFRGASLADFVWESKLPPNYRTLIEEVFGDLKKDLGKREIYARLC 99 (288)
Q Consensus 25 ~~~~LPe~cia~ils~tsP~Dacr~a~vs~~fr~aa~sD~vW~~fLP~d~~~i~~~~~~~~~~~~sKKeLy~~L~ 99 (288)
.++++|-+.|.-||...+|....++-.-|+-+ +-++|.+|.+|+=.||+.-..... +....+-+++|.++.
T Consensus 3 dvG~~py~ll~piL~~~~~~QL~~iE~~np~l--~~~tdeLW~~~i~rdFp~~~~~~~--~~~~~~Wr~~Y~~~~ 73 (109)
T PF06881_consen 3 DVGDVPYHLLRPILEKCSPEQLRRIEDNNPHL--IEDTDELWKKLIKRDFPEESKRQK--PKEPESWRELYEKLK 73 (109)
T ss_pred ccCCCCHHHHHHHHccCCHHHHHHHHHhCCCc--chhhHHHHHHHHHhHCcChhhccc--ccccchHHHHHHHHH
Confidence 57899999999999999999999999999755 567999999999999975222111 123357899999986
No 6
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=86.41 E-value=0.6 Score=44.40 Aligned_cols=79 Identities=22% Similarity=0.264 Sum_probs=57.3
Q ss_pred CCCCCCCcchHHHHHHHhcCC-hHHHHHHhhccHhhhccccchhhhccCCCCCch--hhhhhhhcCCCCCCcHHHHHHHh
Q 023065 22 AKPGLGDLPESCVALIIGSLD-PTEICKLARLNRAFRGASLADFVWESKLPPNYR--TLIEEVFGDLKKDLGKREIYARL 98 (288)
Q Consensus 22 ~~~~~~~LPe~cia~ils~ts-P~Dacr~a~vs~~fr~aa~sD~vW~~fLP~d~~--~i~~~~~~~~~~~~sKKeLy~~L 98 (288)
.+..|-|||++|+-+||-+++ -+|.--+|.|-++..-..+.+-+|.+..--.|. +|-....-+--....-|++|+.|
T Consensus 198 ~~ltl~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~iWkkLcqfHF~erQi~~~l~l~k~~q~dWkqmyf~L 277 (332)
T KOG3926|consen 198 AGLTLHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERRIWKKLCQFHFNERQIHTILILSKKGQKDWKQMYFQL 277 (332)
T ss_pred CCCCcccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhccccchhHHHHHHHH
Confidence 677899999999999999865 899999999999999999999999987654332 23222110000112357889888
Q ss_pred hc
Q 023065 99 CR 100 (288)
Q Consensus 99 ~~ 100 (288)
-+
T Consensus 278 ~r 279 (332)
T KOG3926|consen 278 RR 279 (332)
T ss_pred HH
Confidence 54
No 7
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=83.29 E-value=0.45 Score=46.13 Aligned_cols=79 Identities=19% Similarity=0.245 Sum_probs=54.7
Q ss_pred CCCcchHHHHHHHhcC-----ChHHHHHHhhccHhhhccccchhhhccCCCCCchhhhhhhhc---CCCCCCcHHHHHHH
Q 023065 26 LGDLPESCVALIIGSL-----DPTEICKLARLNRAFRGASLADFVWESKLPPNYRTLIEEVFG---DLKKDLGKREIYAR 97 (288)
Q Consensus 26 ~~~LPe~cia~ils~t-----sP~Dacr~a~vs~~fr~aa~sD~vW~~fLP~d~~~i~~~~~~---~~~~~~sKKeLy~~ 97 (288)
|..||+|.+-.||... +-++-.++|+|++.|+-+|..|.+|..++=.-|+.-+-.... .+.-..|-+++|+.
T Consensus 107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC~KvW~~s~~~ln~~~~~sky~~SWR~Mfl~ 186 (366)
T KOG2997|consen 107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLACLKVWQRSCIKLNPKILQSKYYTSWREMFLE 186 (366)
T ss_pred hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHHHHHHHHHhhhccchhhhhhHHHhHHHHHHhh
Confidence 6789999998887654 459999999999999999999999998876555432211110 01112466777765
Q ss_pred hhcc-ceecC
Q 023065 98 LCRM-NSFDG 106 (288)
Q Consensus 98 L~~p-vlld~ 106 (288)
+| |.+|+
T Consensus 187 --RpRvrFdG 194 (366)
T KOG2997|consen 187 --RPRVRFDG 194 (366)
T ss_pred --Ccceeecc
Confidence 45 55553
No 8
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=79.98 E-value=1.6 Score=43.01 Aligned_cols=38 Identities=24% Similarity=0.433 Sum_probs=34.7
Q ss_pred CCCcchHHHHHHHhcC-ChHHHHHHhhccHhhhccccch
Q 023065 26 LGDLPESCVALIIGSL-DPTEICKLARLNRAFRGASLAD 63 (288)
Q Consensus 26 ~~~LPe~cia~ils~t-sP~Dacr~a~vs~~fr~aa~sD 63 (288)
-.+||+|.+..|..++ +..|.-|+++|+++.|+|+...
T Consensus 4 Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~~ 42 (373)
T PLN03215 4 WSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSGV 42 (373)
T ss_pred hhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhcccc
Confidence 4689999999999998 8999999999999999998853
No 9
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=73.54 E-value=1.3 Score=45.65 Aligned_cols=53 Identities=19% Similarity=0.172 Sum_probs=46.5
Q ss_pred CCCCCCCcchHHHHHHHhcCChHHHHHHhhccHhhhccccchhhhccCCCCCc
Q 023065 22 AKPGLGDLPESCVALIIGSLDPTEICKLARLNRAFRGASLADFVWESKLPPNY 74 (288)
Q Consensus 22 ~~~~~~~LPe~cia~ils~tsP~Dacr~a~vs~~fr~aa~sD~vW~~fLP~d~ 74 (288)
....|..||-+-.-.||++++|++.|.+++||+.|+.-++.|.+|.+.+....
T Consensus 104 ~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~~~~~~~~ 156 (537)
T KOG0274|consen 104 QRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWWRMCRELI 156 (537)
T ss_pred ccchhhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhhhhhhhhc
Confidence 34447789999999999999999999999999999999999999997666543
No 10
>KOG4408 consensus Putative Mg2+ and Co2+ transporter CorD [Inorganic ion transport and metabolism]
Probab=65.65 E-value=1.6 Score=42.56 Aligned_cols=53 Identities=17% Similarity=0.194 Sum_probs=47.6
Q ss_pred CCCCCCCcchHHHHHHHhcCChHHHHHHhhccHhhhccccchhhhccCCCCCc
Q 023065 22 AKPGLGDLPESCVALIIGSLDPTEICKLARLNRAFRGASLADFVWESKLPPNY 74 (288)
Q Consensus 22 ~~~~~~~LPe~cia~ils~tsP~Dacr~a~vs~~fr~aa~sD~vW~~fLP~d~ 74 (288)
..++++.||.+-+..+++++.|+++.+.|+||+.+.-.+.-+..|+++.-.++
T Consensus 4 ~~~~le~~~~~~l~~vls~~~~~~~~~~a~vs~rLk~~~s~~~lw~r~c~k~l 56 (386)
T KOG4408|consen 4 LPLGLEWLPRDPLHLVLSFLLYRDLINCAYVSRRLKELGSHLPLWNRPCKKYL 56 (386)
T ss_pred cccchhhcccccceeeecccchhhhhcceeechHHhhhhhccccccccccccc
Confidence 45678899999999999999999999999999999999999999999985443
No 11
>PF02018 CBM_4_9: Carbohydrate binding domain; InterPro: IPR003305 The 1,4-beta-glucanase CenC from Cellulomonas fimi contains two cellulose-binding domains, CBD(N1) and CBD(N2), arranged in tandem at its N terminus. These homologous CBDs are distinct in their selectivity for binding amorphous and not crystalline cellulose []. Multidimensional heteronuclear nuclear magnetic resonance (NMR) spectroscopy was used to determine the tertiary structure of the 152 amino acid N-terminal cellulose-binding domain from C. fimi 1,4-beta-glucanase CenC (CBDN1) []. The tertiary structure of CBDN1 is strikingly similar to that of the bacterial 1,3-1,4-beta-glucanases, as well as other sugar-binding proteins with jelly-roll folds.; GO: 0016798 hydrolase activity, acting on glycosyl bonds; PDB: 3OEA_B 2ZEX_B 3OEB_A 2ZEY_A 2ZEW_A 1GUI_A 2W5F_A 2WZE_A 2WYS_A 2ZEZ_B ....
Probab=61.60 E-value=74 Score=24.67 Aligned_cols=63 Identities=17% Similarity=0.299 Sum_probs=40.0
Q ss_pred CCCceEEEEEEEeccccccccceeeccccccccCCCCeEEEEEecCC-ceeeeee-eecCCCcEEEEEeeeEEEcCCCce
Q 023065 173 PAGTYSIFIRLQLGRASKRFGRRICSTEHVHGWDRKPVQFQLWTSDG-QHASSQC-ILNEPGKWVQYHIGDFIVENGNLL 250 (288)
Q Consensus 173 p~t~Y~ay~v~kl~~~~~~~~~~v~~~~~~~Gw~~~Pv~~~l~~~~g-~~~~~~~-~l~~~DgW~EielGEF~~~~~~~~ 250 (288)
|+.+|.+.|-++.. .. .++.+.+...++ .+..-.. .....+.|-++++ +|.... +.
T Consensus 60 ~G~~Y~~s~~vk~~--------------~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~s~-~ft~~~--~~ 117 (131)
T PF02018_consen 60 PGKTYTVSFWVKAD--------------SG-----GTVSVSLRDEDGSPYNWYTGQTVTITGEWTKYSG-TFTAPS--DD 117 (131)
T ss_dssp TTSEEEEEEEEEES--------------SS-----EEEEEEEEESSTTTEEEEEEEEEEETSSEEEEEE-EEEEES--SC
T ss_pred CCCEEEEEEEEEeC--------------CC-----CEEEEEEEEcCCCCcEEEEEEEEECCCCcEEEEE-EEEECC--CC
Confidence 89999999999862 11 366677766666 2221111 2233589999995 898884 34
Q ss_pred eEEEEEE
Q 023065 251 TKIKFSM 257 (288)
Q Consensus 251 ~eV~fsl 257 (288)
..+.|.+
T Consensus 118 ~~~~l~~ 124 (131)
T PF02018_consen 118 DTVRLYF 124 (131)
T ss_dssp EEEEEEE
T ss_pred ceEEEEE
Confidence 5566554
No 12
>KOG4114 consensus Cytochrome c oxidase assembly protein PET191 [Posttranslational modification, protein turnover, chaperones]
Probab=53.54 E-value=8.6 Score=29.29 Aligned_cols=32 Identities=47% Similarity=0.943 Sum_probs=22.3
Q ss_pred CCCCCcchHHHHHHHhcCChHHHHHHhhcc--Hhhhcc
Q 023065 24 PGLGDLPESCVALIIGSLDPTEICKLARLN--RAFRGA 59 (288)
Q Consensus 24 ~~~~~LPe~cia~ils~tsP~Dacr~a~vs--~~fr~a 59 (288)
.++.+|||+|++.+=.|+. |.=+.|- +-||.+
T Consensus 36 ~~~~~vPeeC~al~~af~d----CKRslvDmrkRfrgr 69 (73)
T KOG4114|consen 36 PELKDVPEECIALMKAFLD----CKRSLVDMRKRFRGR 69 (73)
T ss_pred CccccCcHHHHHHHHHHHH----HHHHHHHHHHHHccc
Confidence 4457899999999998875 4444443 346554
No 13
>PF13013 F-box-like_2: F-box-like domain
Probab=51.41 E-value=13 Score=30.62 Aligned_cols=46 Identities=30% Similarity=0.401 Sum_probs=39.1
Q ss_pred CCCCCCCcchHHHHHHHhcCChHHHHHHhhccHhhhccccchhhhccCC
Q 023065 22 AKPGLGDLPESCVALIIGSLDPTEICKLARLNRAFRGASLADFVWESKL 70 (288)
Q Consensus 22 ~~~~~~~LPe~cia~ils~tsP~Dacr~a~vs~~fr~aa~sD~vW~~fL 70 (288)
....+.|||+|....|+.+-++.+...+....+++|.+. +..|. +|
T Consensus 18 ~~ltl~DLP~ELl~~I~~~C~~~~l~~l~~~~~~~r~~r--~~~~~-~L 63 (109)
T PF13013_consen 18 QSLTLLDLPWELLQLIFDYCNDPILLALSRTCRAYRSWR--DHIWY-LL 63 (109)
T ss_pred cccchhhChHHHHHHHHhhcCcHHHHHHHHHHHHHHHHH--HHHHH-Hh
Confidence 344689999999999999999999999999999999874 44666 44
No 14
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=51.19 E-value=19 Score=35.39 Aligned_cols=47 Identities=17% Similarity=0.311 Sum_probs=43.1
Q ss_pred CCCCCCcchHHHHHHHhcCChHHHHHHhhccHhhhccccchhhhccC
Q 023065 23 KPGLGDLPESCVALIIGSLDPTEICKLARLNRAFRGASLADFVWESK 69 (288)
Q Consensus 23 ~~~~~~LPe~cia~ils~tsP~Dacr~a~vs~~fr~aa~sD~vW~~f 69 (288)
+..++.||++-+-.|+|.+--.|.-++|.|++-|...|.-...|...
T Consensus 95 gv~~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~l 141 (419)
T KOG2120|consen 95 GVSWDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQTL 141 (419)
T ss_pred CCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceeee
Confidence 34478999999999999999999999999999999999999999754
No 15
>KOG2944 consensus Glyoxalase [Carbohydrate transport and metabolism]
Probab=30.87 E-value=65 Score=28.50 Aligned_cols=77 Identities=22% Similarity=0.301 Sum_probs=45.7
Q ss_pred EEEeeEEeecCCCCceEEE-EEEEeccccccccceeeccc-c----ccccCCCCeEEEEEecCCceeeeeeee-cCCCcE
Q 023065 162 FEVDGEVEFPFPAGTYSIF-IRLQLGRASKRFGRRICSTE-H----VHGWDRKPVQFQLWTSDGQHASSQCIL-NEPGKW 234 (288)
Q Consensus 162 LEI~G~i~t~lp~t~Y~ay-~v~kl~~~~~~~~~~v~~~~-~----~~Gw~~~Pv~~~l~~~~g~~~~~~~~l-~~~DgW 234 (288)
+-+.+++++..|-++|+.- -.|+=++...|....+|.+- + ..-++.+-|+|+=+.+||+.. ....+ ++..+|
T Consensus 84 ~~~~~~~ELthn~Gtes~~~~~~~ngN~~prGfgHIci~V~di~sac~~lkekGV~f~Kk~~dGk~K-~iaF~~dpDgyw 162 (170)
T KOG2944|consen 84 FSRNAKLELTHNWGTESPPDQAYLNGNKEPRGFGHICIEVDDINSACERLKEKGVRFKKKLKDGKMK-PIAFLHDPDGYW 162 (170)
T ss_pred ecccCceeeecCCCCCCCcchhhcCCCCCCCccceEEEEeCCHHHHHHHHHHhCceeeecCCCcccc-ceeEEECCCCCe
Confidence 3457777776676776554 33332222224556788742 2 334445668888788899873 33444 445689
Q ss_pred EEEEe
Q 023065 235 VQYHI 239 (288)
Q Consensus 235 ~Eiel 239 (288)
+||+.
T Consensus 163 iei~~ 167 (170)
T KOG2944|consen 163 IEIEL 167 (170)
T ss_pred EEEee
Confidence 99975
No 16
>KOG3437 consensus Anaphase-promoting complex (APC), subunit 10 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=28.78 E-value=4.3e+02 Score=23.76 Aligned_cols=36 Identities=22% Similarity=0.380 Sum_probs=26.9
Q ss_pred CCeEEEEEecCCcee---eeeeeecCCCcEEEEEeeeEE
Q 023065 208 KPVQFQLWTSDGQHA---SSQCILNEPGKWVQYHIGDFI 243 (288)
Q Consensus 208 ~Pv~~~l~~~~g~~~---~~~~~l~~~DgW~EielGEF~ 243 (288)
.|.++++..++|-.. .+...+.++.||+.+.+..++
T Consensus 87 tPs~i~I~~G~g~~dl~~~~~~el~ep~GWv~lp~~d~~ 125 (184)
T KOG3437|consen 87 TPSKIKIRAGNGFNDLWEIQSVELVEPKGWVHLPVLDND 125 (184)
T ss_pred CceeEEEEecCChhheeeeeEEEEecCCceEEEeeccCC
Confidence 688888877777542 223556789999999999873
No 17
>KOG3233 consensus RNA polymerase III, subunit C34 [Transcription]
Probab=26.46 E-value=15 Score=35.12 Aligned_cols=43 Identities=16% Similarity=0.143 Sum_probs=30.6
Q ss_pred cCCCceEEEEeec--cceeecCCCCCceeeeeCC--ccccccceEEeeeeEEEEe
Q 023065 115 KSTGGVCLSISAK--GLAITGIDDRRYWNHIPTE--ESRFTSVAYLQQIWWFEVD 165 (288)
Q Consensus 115 k~sGkkCymLSAR--~L~ItWgdd~~YW~Wi~~p--eSRF~EVAeL~~VcWLEI~ 165 (288)
+.+++|||||.-= +.+||.|- |.+.. |+-|.| -|+++||.=+.
T Consensus 137 ~n~~~KvYmLy~leP~~elTGG~------WytDqdlDvEfIe--~L~~~c~~fl~ 183 (297)
T KOG3233|consen 137 KNSRKKVYMLYDLEPDSELTGGT------WYTDQDLDVEFIE--VLKQICVRFLE 183 (297)
T ss_pred cCCCceEEEEecccccccccCCc------ccccccccHHHHH--HHHHHHHHHHH
Confidence 5688999999854 77899774 66544 455654 48888885443
No 18
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=21.23 E-value=57 Score=32.50 Aligned_cols=43 Identities=16% Similarity=0.447 Sum_probs=35.2
Q ss_pred CCCcc----hHHHHHHHhcCChHHHHHHhhccHhhhccccchhhhcc
Q 023065 26 LGDLP----ESCVALIIGSLDPTEICKLARLNRAFRGASLADFVWES 68 (288)
Q Consensus 26 ~~~LP----e~cia~ils~tsP~Dacr~a~vs~~fr~aa~sD~vW~~ 68 (288)
+..|| |.-...|||+++..+.|.+-.||+..+.+-.-..+|.+
T Consensus 75 i~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WKk 121 (499)
T KOG0281|consen 75 ITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWKK 121 (499)
T ss_pred HHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHHH
Confidence 45689 88888999999999999999999998877655555543
Done!