Query 023067
Match_columns 288
No_of_seqs 226 out of 416
Neff 4.4
Searched_HMMs 46136
Date Fri Mar 29 08:12:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023067.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023067hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2567 Uncharacterized conser 100.0 2E-46 4.4E-51 325.1 13.3 129 1-165 1-129 (179)
2 PRK04015 DNA/RNA-binding prote 99.7 7E-16 1.5E-20 123.6 11.0 87 17-151 3-91 (91)
3 PF01918 Alba: Alba; InterPro 99.6 4.1E-15 8.9E-20 111.5 9.1 64 19-118 1-68 (70)
4 TIGR00285 DNA-binding protein 99.5 3E-13 6.5E-18 107.7 11.1 85 18-150 1-87 (87)
5 COG1581 Ssh10b Archaeal DNA-bi 99.3 3.2E-11 6.9E-16 96.1 11.4 50 17-68 3-52 (91)
6 PF12328 Rpp20: Rpp20 subunit 99.2 1.6E-10 3.5E-15 99.4 9.6 93 18-147 3-144 (144)
7 KOG3973 Uncharacterized conser 98.0 3.1E-05 6.8E-10 75.6 9.1 17 219-235 368-385 (465)
8 KOG0921 Dosage compensation co 97.4 0.00053 1.2E-08 73.9 9.3 19 75-93 1033-1051(1282)
9 KOG3973 Uncharacterized conser 96.6 0.0096 2.1E-07 58.7 8.6 13 216-228 369-382 (465)
10 KOG0921 Dosage compensation co 96.5 0.011 2.3E-07 64.3 9.2 21 261-281 1250-1270(1282)
11 KOG3262 H/ACA small nucleolar 87.0 4 8.7E-05 37.5 8.4 33 144-176 106-139 (215)
12 PF05918 API5: Apoptosis inhib 80.1 0.55 1.2E-05 48.8 0.0 6 146-151 457-462 (556)
13 PF05918 API5: Apoptosis inhib 74.5 0.99 2.2E-05 47.0 0.0 8 155-162 446-453 (556)
14 PF04232 SpoVS: Stage V sporul 73.0 18 0.00039 29.2 6.8 48 19-68 2-50 (86)
15 PLN03134 glycine-rich RNA-bind 65.1 6.6 0.00014 33.5 3.1 41 137-177 55-97 (144)
16 KOG3262 H/ACA small nucleolar 56.4 25 0.00054 32.5 5.3 9 60-68 53-61 (215)
17 TIGR01648 hnRNP-R-Q heterogene 54.6 21 0.00046 37.5 5.2 23 156-178 269-291 (578)
18 PF06792 UPF0261: Uncharacteri 45.2 56 0.0012 33.1 6.2 45 17-61 184-231 (403)
19 PRK02399 hypothetical protein; 43.0 65 0.0014 32.7 6.3 46 17-62 185-233 (406)
20 PRK11634 ATP-dependent RNA hel 40.7 42 0.00091 35.3 4.8 12 57-68 255-266 (629)
21 KOG0116 RasGAP SH3 binding pro 34.0 46 0.001 33.8 3.7 20 157-176 331-350 (419)
22 PF02762 Cbl_N3: CBL proto-onc 31.4 14 0.00031 29.7 -0.3 21 156-176 1-21 (86)
23 TIGR01659 sex-lethal sex-letha 29.3 1.5E+02 0.0032 29.1 6.3 42 137-178 214-257 (346)
24 PF06294 DUF1042: Domain of Un 29.0 62 0.0014 28.3 3.3 46 52-98 16-61 (158)
25 COG3958 Transketolase, C-termi 24.5 83 0.0018 30.9 3.5 41 46-86 193-237 (312)
26 PF14384 DUF4415: Domain of un 23.6 13 0.00029 27.6 -1.6 21 143-163 30-53 (62)
27 KOG0122 Translation initiation 22.3 29 0.00062 33.3 -0.1 43 135-177 208-252 (270)
28 KOG0116 RasGAP SH3 binding pro 21.9 1.3E+02 0.0029 30.6 4.5 9 72-80 110-118 (419)
29 PRK10590 ATP-dependent RNA hel 20.4 90 0.002 31.0 3.0 7 145-151 297-303 (456)
No 1
>KOG2567 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=2e-46 Score=325.11 Aligned_cols=129 Identities=48% Similarity=0.760 Sum_probs=128.1
Q ss_pred CCCceeccCCCCCCCCCCCeEEEcCCCchhHHHHHHHHHHhhcCCCEEEEEeccHhHHHHHHHHHHHHHhhhhhccccCC
Q 023067 1 MDRYQKVEKPKPESPINENEIRITTQGAIRNYITYATTLLQEKHAKEIVLKAMGQAINKTVAIAEIIKVCIYFNIFTLSP 80 (288)
Q Consensus 1 md~y~~v~~~~~~~~~~~NeIRVt~~~~irnyV~~A~~lL~~~~~~~IvIkg~G~AIsKAV~vAEILK~~~~~q~~~~~~ 80 (288)
||.|+.|-||+|++|++.|||||+.+++|+|||.||+.+|+++..+.|||+|||.||+|||+||||||
T Consensus 1 ~~~e~~~~kP~~d~pp~a~emrV~~g~kirN~i~~A~~~L~~~~~r~VVfsg~Grai~KTVscaEilK------------ 68 (179)
T KOG2567|consen 1 MSVEQPASKPFPDLPPDANEMRVKSGSKIRNLIEFATELLQKGSHRCVVFSGSGRAIVKTVSCAEILK------------ 68 (179)
T ss_pred CccccccCCCcccCCCCcceEEEccCchHHHHHHHHHHHhhCCCeeEEEEecCCcceeeeeeHHHHHh------------
Confidence 89999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccchhhhHHHHhhhhhHhhhhhcccCcceeeeeEEEEEeccccccccCCCcceeEeeeeeeEEEEeeCCCCCCCCCCc
Q 023067 81 ISSLSLSSCLLAIYNQLAICIIEQKRIPQLHQDTAISSVSITDTWEPIEEGLVPVEMTRHVSMISITFSTRELNKNSPGY 160 (288)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~ri~gLhQ~t~i~s~~i~d~~ep~eegl~~~~v~R~VsaI~ItLSkd~ld~k~pGY 160 (288)
+|+++|||+|.|++.+|+|+|+|.+|||++++++||||+|+|+||+|+||++.+||
T Consensus 69 ------------------------rRipgLhQ~t~l~~~sv~d~W~p~~eGl~pl~vtRhVp~l~IlLS~deL~~~~~Gy 124 (179)
T KOG2567|consen 69 ------------------------RRIPGLHQVTRLRYTSVEDVWEPTEEGLEPLEVTRHVPMLHILLSLDELDPTSPGY 124 (179)
T ss_pred ------------------------hhCcchhhhceeeeeehhhcccccccCccceEEeeccceEEEEEecccCCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 023067 161 QSPHN 165 (288)
Q Consensus 161 Q~P~~ 165 (288)
|+|.+
T Consensus 125 Q~P~~ 129 (179)
T KOG2567|consen 125 QPPNP 129 (179)
T ss_pred cCCCC
Confidence 99998
No 2
>PRK04015 DNA/RNA-binding protein albA; Provisional
Probab=99.66 E-value=7e-16 Score=123.62 Aligned_cols=87 Identities=32% Similarity=0.486 Sum_probs=72.4
Q ss_pred CCCeEEEcCCCchhHHHHHHHHHHhhcCCCEEEEEeccHhHHHHHHHHHHHHHhhhhhccccCCCcccchhhhHHHHhhh
Q 023067 17 NENEIRITTQGAIRNYITYATTLLQEKHAKEIVLKAMGQAINKTVAIAEIIKVCIYFNIFTLSPISSLSLSSCLLAIYNQ 96 (288)
Q Consensus 17 ~~NeIRVt~~~~irnyV~~A~~lL~~~~~~~IvIkg~G~AIsKAV~vAEILK~~~~~q~~~~~~~~~~~~~~~~~~~~~~ 96 (288)
++|+|+|+.+ .++|||.+++.+|+ ++.++|+|||+|+||+|||+||||||
T Consensus 3 ~en~i~Ig~k-pvmnYV~~~~~~l~-~g~~eV~iKa~G~aIskAV~vaEilk---------------------------- 52 (91)
T PRK04015 3 EENVVLVGKK-PVMNYVLAVLTQFN-QGAKEVVIKARGRAISKAVDVAEIVR---------------------------- 52 (91)
T ss_pred CCCEEEEcCC-cHHHHHHHHHHHHh-CCCCeEEEEEeccccchhhhHHHHHH----------------------------
Confidence 5899999997 68899999999999 58999999999999999999999999
Q ss_pred hhHhhhhhcccCcceeeee--EEEEEeccccccccCCCcceeEeeeeeeEEEEeeCC
Q 023067 97 LAICIIEQKRIPQLHQDTA--ISSVSITDTWEPIEEGLVPVEMTRHVSMISITFSTR 151 (288)
Q Consensus 97 ~~~~~~~~~ri~gLhQ~t~--i~s~~i~d~~ep~eegl~~~~v~R~VsaI~ItLSkd 151 (288)
+|+...+++.+ |+|.++.+ ++| .+++||.|.|+|++.
T Consensus 53 --------~r~~~~v~v~~I~i~se~i~~-----~~g-----~~~~VS~IEI~l~k~ 91 (91)
T PRK04015 53 --------NRFLPDVEIKEIKIGTEEVTS-----EDG-----RESNVSTIEIVLEKK 91 (91)
T ss_pred --------HhccCCeEEEEEEeccEEeec-----CCC-----cEEEEEEEEEEEecC
Confidence 67655588877 55544433 233 467999999999863
No 3
>PF01918 Alba: Alba; InterPro: IPR002775 Members of this family include the archaeal protein Alba and a number of eukaryotic proteins with no known function. The DNA/RNA-binding protein Alba binds double-stranded DNA tightly but without sequence specificity. It binds rRNA and mRNA in vivo, and may play a role in maintaining the structural and functional stability of RNA, and, perhaps, ribosomes. It is distributed uniformly and abundantly on the chromosome. Alba has been shown to bind DNA and affect DNA supercoiling in a temperature dependent manner []. It is regulated by acetylation (alba = acetylation lowers binding affinity) by the Sir2 protein. Alba is proposed to play a role in establishment or maintenance of chromatin architecture and thereby in transcription repression. For further information see [].; GO: 0003676 nucleic acid binding; PDB: 3TOE_B 3IAB_A 1NFJ_A 1NFH_B 2Q3V_B 1VM0_B 1NH9_A 1Y9X_A 3U6Y_C 2H9U_A ....
Probab=99.60 E-value=4.1e-15 Score=111.49 Aligned_cols=64 Identities=39% Similarity=0.627 Sum_probs=57.3
Q ss_pred CeEEEcCCCchhHHHHHHHHHH---hhcCCCEEEEEeccHhHHHHHHHHHHHHHhhhhhccccCCCcccchhhhHHHHhh
Q 023067 19 NEIRITTQGAIRNYITYATTLL---QEKHAKEIVLKAMGQAINKTVAIAEIIKVCIYFNIFTLSPISSLSLSSCLLAIYN 95 (288)
Q Consensus 19 NeIRVt~~~~irnyV~~A~~lL---~~~~~~~IvIkg~G~AIsKAV~vAEILK~~~~~q~~~~~~~~~~~~~~~~~~~~~ 95 (288)
|+|+|+.++++++||.+|+++| ++.+.++|+|+|+|+||+|||+||||||
T Consensus 1 n~I~V~~~~~~~~~v~~~~~~L~~~~~~~~~~V~l~g~G~aI~kaI~vaei~K--------------------------- 53 (70)
T PF01918_consen 1 NEIYVSSNSPIKSYVKRALKLLEGRENGKNDEVVLKGRGKAISKAISVAEILK--------------------------- 53 (70)
T ss_dssp SEEEE-STS-HHHHHHHHHHHHT-TTHTTCSEEEEEEECCHHHHHHHHHHHHH---------------------------
T ss_pred CEEEECCCCCHHHHHHHHHHHHhhhhcCCCCEEEEEEEcHHHHHHHHHHHHHH---------------------------
Confidence 7999999999999999999999 4457899999999999999999999999
Q ss_pred hhhHhhhhhccc-CcceeeeeEEE
Q 023067 96 QLAICIIEQKRI-PQLHQDTAISS 118 (288)
Q Consensus 96 ~~~~~~~~~~ri-~gLhQ~t~i~s 118 (288)
+++ ++|||++.+.+
T Consensus 54 ---------~~~~~~~~qv~~~t~ 68 (70)
T PF01918_consen 54 ---------RRFGEGLYQVNKITS 68 (70)
T ss_dssp ---------HHTSTTTEEEEEEEE
T ss_pred ---------HhhcCCCEEEEEEec
Confidence 777 49999998875
No 4
>TIGR00285 DNA-binding protein Alba. This protein appears so far only in the Archaea, but may be universal there. There is a single member in three of the first four completed archaeal genomes, and a second copy in A. fulgidus. In Sulfolobus shibatae there is a tandem second copy that is poorly conserved and scores below the trusted cutoff; all other members of the family are conserved at greater than 50 % pairwise identity.
Probab=99.49 E-value=3e-13 Score=107.70 Aligned_cols=85 Identities=32% Similarity=0.452 Sum_probs=68.8
Q ss_pred CCeEEEcCCCchhHHHHHHHHHHhhcCCCEEEEEeccHhHHHHHHHHHHHHHhhhhhccccCCCcccchhhhHHHHhhhh
Q 023067 18 ENEIRITTQGAIRNYITYATTLLQEKHAKEIVLKAMGQAINKTVAIAEIIKVCIYFNIFTLSPISSLSLSSCLLAIYNQL 97 (288)
Q Consensus 18 ~NeIRVt~~~~irnyV~~A~~lL~~~~~~~IvIkg~G~AIsKAV~vAEILK~~~~~q~~~~~~~~~~~~~~~~~~~~~~~ 97 (288)
+|.|+|..+ .++|||..++.+|++ +.++|+|||+|+||+|||+||||||
T Consensus 1 e~~i~vG~K-PvmnYVlavlt~fn~-g~~eV~iKarG~aIskAVdvaeiik----------------------------- 49 (87)
T TIGR00285 1 ENVVYIGNK-PVMNYVLAVLTQLNS-GADEVIIKARGRAISRAVDVAEIVR----------------------------- 49 (87)
T ss_pred CCEEEEcCC-cHHHHHHHHHHHHhC-CCCeEEEEEecchhhhHHHHHHHHH-----------------------------
Confidence 489999998 599999999999985 7899999999999999999999999
Q ss_pred hHhhhhhcccCcceeeeeE--EEEEeccccccccCCCcceeEeeeeeeEEEEeeC
Q 023067 98 AICIIEQKRIPQLHQDTAI--SSVSITDTWEPIEEGLVPVEMTRHVSMISITFST 150 (288)
Q Consensus 98 ~~~~~~~~ri~gLhQ~t~i--~s~~i~d~~ep~eegl~~~~v~R~VsaI~ItLSk 150 (288)
+|+...++..+| +|.++. -++| .+++||.|+|.|.+
T Consensus 50 -------~r~~~~v~v~~I~i~te~~~-----~~~G-----~~~~VStIEI~l~~ 87 (87)
T TIGR00285 50 -------NRFIPDIKIKKIKIGTEEIK-----SEQG-----REVNVSTIEIVLAK 87 (87)
T ss_pred -------HhccCCceEEEEEeccEEee-----cCCC-----ceeeEEEEEEEEeC
Confidence 777666777666 443332 1233 35689999999974
No 5
>COG1581 Ssh10b Archaeal DNA-binding protein [Transcription]
Probab=99.30 E-value=3.2e-11 Score=96.15 Aligned_cols=50 Identities=36% Similarity=0.594 Sum_probs=47.0
Q ss_pred CCCeEEEcCCCchhHHHHHHHHHHhhcCCCEEEEEeccHhHHHHHHHHHHHH
Q 023067 17 NENEIRITTQGAIRNYITYATTLLQEKHAKEIVLKAMGQAINKTVAIAEIIK 68 (288)
Q Consensus 17 ~~NeIRVt~~~~irnyV~~A~~lL~~~~~~~IvIkg~G~AIsKAV~vAEILK 68 (288)
.+|.|+|.++ .+.|||-.++.+|++ +.++|+|||.|+||+|||.+|||++
T Consensus 3 ~envV~vG~K-PvmNYVlAvlt~fn~-g~~eViiKARGraIskAVDvaeivR 52 (91)
T COG1581 3 EENVVLVGKK-PVMNYVLAVLTQFNE-GADEVIIKARGRAISKAVDVAEIVR 52 (91)
T ss_pred CccEEEEcCc-chHHHHHHHHHHHHc-CCCEEEEEecchhhHhhHhHHHHHH
Confidence 4699999988 599999999999996 6999999999999999999999999
No 6
>PF12328 Rpp20: Rpp20 subunit of nuclear RNase MRP and P; PDB: 3IAB_B.
Probab=99.16 E-value=1.6e-10 Score=99.43 Aligned_cols=93 Identities=22% Similarity=0.345 Sum_probs=65.9
Q ss_pred CCeEEEcCCCchhHHHHHHHHHHhhcC-------------------------------CCEEEEEeccHhHHHHHHHHHH
Q 023067 18 ENEIRITTQGAIRNYITYATTLLQEKH-------------------------------AKEIVLKAMGQAINKTVAIAEI 66 (288)
Q Consensus 18 ~NeIRVt~~~~irnyV~~A~~lL~~~~-------------------------------~~~IvIkg~G~AIsKAV~vAEI 66 (288)
++.|+|+.++.|.++|..+.+||..-. .++|+|||||+||+||+.||.-
T Consensus 3 ~~~iyVss~TPfmSavKRv~K~L~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~gtGkAIeKal~la~~ 82 (144)
T PF12328_consen 3 PKVIYVSSKTPFMSAVKRVRKLLDKAEKRATSSVNLAKKKKSQKKKIAQLAEGSEALKSEEVTVKGTGKAIEKALSLALW 82 (144)
T ss_dssp TTEEE--SS--HHHHHHHHHHHHHHHHHH----------------T-------------SEEEEEEEGGGHHHHHHHHHH
T ss_pred CcEEEEecCCchHHHHHHHHHHHHhhhccccccccccccccccccccccccccccccCccEEEEEeccHHHHHHHHHHHH
Confidence 678999999999999999999997411 1699999999999999999999
Q ss_pred HHHhhhhhccccCCCcccchhhhHHHHhhhhhHhhhhhcccCcceeeeeEEEEEecccccccc-----------------
Q 023067 67 IKVCIYFNIFTLSPISSLSLSSCLLAIYNQLAICIIEQKRIPQLHQDTAISSVSITDTWEPIE----------------- 129 (288)
Q Consensus 67 LK~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~gLhQ~t~i~s~~i~d~~ep~e----------------- 129 (288)
|+ +. .++--.+.++||++.|++++.+
T Consensus 83 Fq------------------------------------~~-~~~~V~V~TgTV~vvDdi~~~e~~~~~~~~~~~~~~~~~ 125 (144)
T PF12328_consen 83 FQ------------------------------------RK-KGYKVEVRTGTVEVVDDIVEDEDEDEDEEESEEREDDDD 125 (144)
T ss_dssp HH------------------------------------HT-T---EEEEEEEEEEEEE----------------------
T ss_pred Hh------------------------------------hc-CCeEEEEEeceEEEEEEEeeccccccccccccccccCcc
Confidence 98 22 2777889999999999998763
Q ss_pred -CCCcceeEeeeeeeEEEE
Q 023067 130 -EGLVPVEMTRHVSMISIT 147 (288)
Q Consensus 130 -egl~~~~v~R~VsaI~It 147 (288)
+..++...+|.||+|+|.
T Consensus 126 ~~~~~~esR~R~vS~VEv~ 144 (144)
T PF12328_consen 126 DEDEEPESRTRWVSMVEVA 144 (144)
T ss_dssp -------EEEEEEEEEEEE
T ss_pred ccccCccceEEeeEEEEEC
Confidence 345678999999999985
No 7
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=97.98 E-value=3.1e-05 Score=75.62 Aligned_cols=17 Identities=65% Similarity=1.107 Sum_probs=7.6
Q ss_pred ccccCcc-ccCCCCCCcc
Q 023067 219 GRGRGRS-YARGGYGNYQ 235 (288)
Q Consensus 219 grGrGrg-~grgg~g~~~ 235 (288)
|||+||| +|+||.++|.
T Consensus 368 GrGgGRGggG~GGGggyq 385 (465)
T KOG3973|consen 368 GRGGGRGGGGRGGGGGYQ 385 (465)
T ss_pred CCCCCCCCCCCCCCCCCc
Confidence 3444443 4455555443
No 8
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=97.45 E-value=0.00053 Score=73.87 Aligned_cols=19 Identities=21% Similarity=-0.013 Sum_probs=9.8
Q ss_pred ccccCCCcccchhhhHHHH
Q 023067 75 IFTLSPISSLSLSSCLLAI 93 (288)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~ 93 (288)
|=+=+||--|-++--||||
T Consensus 1033 M~fPsPFFVFGEKIRTRAI 1051 (1282)
T KOG0921|consen 1033 MDFPSPFFVFGEKIRTRAI 1051 (1282)
T ss_pred cCCCCceeeechhhhhhee
Confidence 3344566555555444444
No 9
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=96.60 E-value=0.0096 Score=58.67 Aligned_cols=13 Identities=54% Similarity=0.882 Sum_probs=5.8
Q ss_pred CCCccc-cCccccC
Q 023067 216 RGRGRG-RGRSYAR 228 (288)
Q Consensus 216 ~grgrG-rGrg~gr 228 (288)
+|+||| +|+|.|+
T Consensus 369 rGgGRGggG~GGGg 382 (465)
T KOG3973|consen 369 RGGGRGGGGRGGGG 382 (465)
T ss_pred CCCCCCCCCCCCCC
Confidence 344444 4554443
No 10
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=96.54 E-value=0.011 Score=64.26 Aligned_cols=21 Identities=57% Similarity=0.889 Sum_probs=9.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCC
Q 023067 261 ERGRGGGGRGYARGRGRTGGR 281 (288)
Q Consensus 261 ~~grgg~grg~~rg~gr~~~~ 281 (288)
.+|+||-|||++||++.+++.
T Consensus 1250 yrgsGGfgrgggrgagggGgf 1270 (1282)
T KOG0921|consen 1250 YRGSGGFGRGGGRGAGGGGGF 1270 (1282)
T ss_pred ccCCCCcCCCCCCCCCCCCCC
Confidence 344444444444444444443
No 11
>KOG3262 consensus H/ACA small nucleolar RNP component GAR1 [Translation, ribosomal structure and biogenesis]
Probab=87.04 E-value=4 Score=37.54 Aligned_cols=33 Identities=18% Similarity=0.121 Sum_probs=18.5
Q ss_pred EEEEeeCC-CCCCCCCCccCCCCCCcchhhhHHH
Q 023067 144 ISITFSTR-ELNKNSPGYQSPHNAEQPKLQYRYQ 176 (288)
Q Consensus 144 I~ItLSkd-~ld~k~pGYQ~P~~~dqvk~~~~~~ 176 (288)
++|+|+-- .-+.-.++=+-+++.+.+-|...++
T Consensus 106 fsIK~~dgv~assfk~g~k~fi~p~KllPl~RFL 139 (215)
T KOG3262|consen 106 FSIKPSDGVQASSFKPGDKLFIDPDKLLPLDRFL 139 (215)
T ss_pred EEEecCCCceeecccCCCeEEecccccCcHhhcC
Confidence 44554431 1224445556677777777777776
No 12
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=80.07 E-value=0.55 Score=48.85 Aligned_cols=6 Identities=50% Similarity=0.551 Sum_probs=1.3
Q ss_pred EEeeCC
Q 023067 146 ITFSTR 151 (288)
Q Consensus 146 ItLSkd 151 (288)
|+||-.
T Consensus 457 itlSWk 462 (556)
T PF05918_consen 457 ITLSWK 462 (556)
T ss_dssp ---TTS
T ss_pred cceeee
Confidence 455533
No 13
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=74.45 E-value=0.99 Score=47.01 Aligned_cols=8 Identities=38% Similarity=0.899 Sum_probs=0.0
Q ss_pred CCCCCccC
Q 023067 155 KNSPGYQS 162 (288)
Q Consensus 155 ~k~pGYQ~ 162 (288)
.+-|=|..
T Consensus 446 ~~pPsf~~ 453 (556)
T PF05918_consen 446 HNPPSFKS 453 (556)
T ss_dssp --------
T ss_pred hCCccccc
Confidence 34444444
No 14
>PF04232 SpoVS: Stage V sporulation protein S (SpoVS); InterPro: IPR007347 In Bacillus subtilis this protein interferes with sporulation at an early stage and this inhibitory effect is overcome by SpoIIB and SpoVG. SpoVS seems to play a positive role in allowing progression beyond stage V of sporulation. Null mutations in the spoVS gene block sporulation at stage V, impairing the development of heat resistance and coat assembly [].; PDB: 2EH1_B 2EK0_B.
Probab=73.03 E-value=18 Score=29.18 Aligned_cols=48 Identities=19% Similarity=0.341 Sum_probs=35.1
Q ss_pred CeEEEcCCCchhHHHHHHHHHHhhcCCCEEEEEecc-HhHHHHHHHHHHHH
Q 023067 19 NEIRITTQGAIRNYITYATTLLQEKHAKEIVLKAMG-QAINKTVAIAEIIK 68 (288)
Q Consensus 19 NeIRVt~~~~irnyV~~A~~lL~~~~~~~IvIkg~G-~AIsKAV~vAEILK 68 (288)
+.++|+.+++...+-..-...|.+. ..+.|.++| .|++.||...-|-+
T Consensus 2 e~LKVSs~S~p~~vAgAIa~~lre~--~~v~lqaiGa~AvnqAvKAIAiAR 50 (86)
T PF04232_consen 2 EVLKVSSKSNPNAVAGAIAGVLREG--GKVELQAIGAGAVNQAVKAIAIAR 50 (86)
T ss_dssp -EEEE-TT--HHHHHHHHHHHHHHT--SEEEEEE-SHHHHHHHHHHHHHHH
T ss_pred ceEEEcCCCCHHHHHHHHHHHHhcC--CcEEEEEECHHHHHHHHHHHHHHH
Confidence 4689999999888777777777764 599999999 68998888887776
No 15
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=65.12 E-value=6.6 Score=33.47 Aligned_cols=41 Identities=2% Similarity=0.023 Sum_probs=32.5
Q ss_pred EeeeeeeEEEEeeCCCCC--CCCCCccCCCCCCcchhhhHHHH
Q 023067 137 MTRHVSMISITFSTRELN--KNSPGYQSPHNAEQPKLQYRYQQ 177 (288)
Q Consensus 137 v~R~VsaI~ItLSkd~ld--~k~pGYQ~P~~~dqvk~~~~~~~ 177 (288)
+...-++..|.|.+|..+ .+.++|+++.+.++++.|.+..+
T Consensus 55 F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~ln 97 (144)
T PLN03134 55 FAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMD 97 (144)
T ss_pred HhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcC
Confidence 344556777888877765 68999999999999999998753
No 16
>KOG3262 consensus H/ACA small nucleolar RNP component GAR1 [Translation, ribosomal structure and biogenesis]
Probab=56.44 E-value=25 Score=32.49 Aligned_cols=9 Identities=11% Similarity=0.457 Sum_probs=4.1
Q ss_pred HHHHHHHHH
Q 023067 60 TVAIAEIIK 68 (288)
Q Consensus 60 AV~vAEILK 68 (288)
+|.|+++|-
T Consensus 53 vvelg~flh 61 (215)
T KOG3262|consen 53 VVELGKFLH 61 (215)
T ss_pred hhhhhhhhh
Confidence 344444444
No 17
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=54.56 E-value=21 Score=37.52 Aligned_cols=23 Identities=4% Similarity=-0.062 Sum_probs=19.6
Q ss_pred CCCCccCCCCCCcchhhhHHHHH
Q 023067 156 NSPGYQSPHNAEQPKLQYRYQQQ 178 (288)
Q Consensus 156 k~pGYQ~P~~~dqvk~~~~~~~~ 178 (288)
+.++|++|.+.+++++|.+.++.
T Consensus 269 rgfAFVeF~s~e~A~kAi~~lnG 291 (578)
T TIGR01648 269 RDYAFVHFEDREDAVKAMDELNG 291 (578)
T ss_pred cCeEEEEeCCHHHHHHHHHHhCC
Confidence 45999999999999999887653
No 18
>PF06792 UPF0261: Uncharacterised protein family (UPF0261); InterPro: IPR008322 The proteins in this entry are functionally uncharacterised.
Probab=45.19 E-value=56 Score=33.12 Aligned_cols=45 Identities=22% Similarity=0.322 Sum_probs=39.6
Q ss_pred CCCeEEEcCCCchhHHHHHHHHHHhhcCCCEEEEEecc---HhHHHHH
Q 023067 17 NENEIRITTQGAIRNYITYATTLLQEKHAKEIVLKAMG---QAINKTV 61 (288)
Q Consensus 17 ~~NeIRVt~~~~irnyV~~A~~lL~~~~~~~IvIkg~G---~AIsKAV 61 (288)
..-.|=||.=+....+|+.+.+.|++++++.+||||.| +|+.|-|
T Consensus 184 ~kp~I~iTmfGvTTp~V~~~~~~Le~~G~Ev~VFHAtG~GG~aME~Li 231 (403)
T PF06792_consen 184 DKPLIGITMFGVTTPCVDAIRERLEEEGYEVLVFHATGTGGRAMERLI 231 (403)
T ss_pred CCcEEEEECCCCcHHHHHHHHHHHHhcCCeEEEEcCCCCchHHHHHHH
Confidence 45578899988889999999999999999999999987 6888765
No 19
>PRK02399 hypothetical protein; Provisional
Probab=42.96 E-value=65 Score=32.74 Aligned_cols=46 Identities=22% Similarity=0.312 Sum_probs=38.3
Q ss_pred CCCeEEEcCCCchhHHHHHHHHHHhhcCCCEEEEEecc---HhHHHHHH
Q 023067 17 NENEIRITTQGAIRNYITYATTLLQEKHAKEIVLKAMG---QAINKTVA 62 (288)
Q Consensus 17 ~~NeIRVt~~~~irnyV~~A~~lL~~~~~~~IvIkg~G---~AIsKAV~ 62 (288)
+.-.|=||.=+....+|..+.+.|++++++.+||||.| +|+.+-|.
T Consensus 185 ~kp~Ig~TmfGvTtp~v~~~~~~Le~~GyEvlVFHATG~GGraME~Li~ 233 (406)
T PRK02399 185 DKPLIGLTMFGVTTPCVQAAREELEARGYEVLVFHATGTGGRAMEKLID 233 (406)
T ss_pred CCceEEEecCCCcHHHHHHHHHHHHhCCCeEEEEcCCCCchHHHHHHHH
Confidence 34467888877778999999999999999999999987 58877653
No 20
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=40.71 E-value=42 Score=35.34 Aligned_cols=12 Identities=33% Similarity=0.498 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHH
Q 023067 57 INKTVAIAEIIK 68 (288)
Q Consensus 57 IsKAV~vAEILK 68 (288)
...|..+++.|+
T Consensus 255 k~~a~~l~~~L~ 266 (629)
T PRK11634 255 KNATLEVAEALE 266 (629)
T ss_pred HHHHHHHHHHHH
Confidence 455556666666
No 21
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=33.96 E-value=46 Score=33.78 Aligned_cols=20 Identities=15% Similarity=0.061 Sum_probs=17.9
Q ss_pred CCCccCCCCCCcchhhhHHH
Q 023067 157 SPGYQSPHNAEQPKLQYRYQ 176 (288)
Q Consensus 157 ~pGYQ~P~~~dqvk~~~~~~ 176 (288)
-+||+++.+.+.++.+.++.
T Consensus 331 ~fgFV~f~~~~~~~~~i~As 350 (419)
T KOG0116|consen 331 CFGFVEFENAAAVQNAIEAS 350 (419)
T ss_pred ceEEEEEeecchhhhhhhcC
Confidence 89999999999999988875
No 22
>PF02762 Cbl_N3: CBL proto-oncogene N-terminus, SH2-like domain; InterPro: IPR014742 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the SH2-like domain.; PDB: 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B 3BUW_B ....
Probab=31.35 E-value=14 Score=29.66 Aligned_cols=21 Identities=19% Similarity=0.298 Sum_probs=14.9
Q ss_pred CCCCccCCCCCCcchhhhHHH
Q 023067 156 NSPGYQSPHNAEQPKLQYRYQ 176 (288)
Q Consensus 156 k~pGYQ~P~~~dqvk~~~~~~ 176 (288)
++|||++|++-|+||...+.-
T Consensus 1 tHpgY~AFlTYdevk~~L~~~ 21 (86)
T PF02762_consen 1 THPGYMAFLTYDEVKARLQHY 21 (86)
T ss_dssp S-TTBETT--HHHHHHHHGGG
T ss_pred CCCceeEEEeHHHHHHHHHHH
Confidence 589999999999999866543
No 23
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=29.34 E-value=1.5e+02 Score=29.06 Aligned_cols=42 Identities=5% Similarity=0.056 Sum_probs=32.5
Q ss_pred EeeeeeeEEEEeeCCCCC--CCCCCccCCCCCCcchhhhHHHHH
Q 023067 137 MTRHVSMISITFSTRELN--KNSPGYQSPHNAEQPKLQYRYQQQ 178 (288)
Q Consensus 137 v~R~VsaI~ItLSkd~ld--~k~pGYQ~P~~~dqvk~~~~~~~~ 178 (288)
+...-.++.|+|.+|..+ .+.++|+++.+.++++.|.+.++.
T Consensus 214 F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng 257 (346)
T TIGR01659 214 FGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNN 257 (346)
T ss_pred HHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCC
Confidence 444455667777777665 568999999999999999998753
No 24
>PF06294 DUF1042: Domain of Unknown Function (DUF1042); InterPro: IPR010441 This is a family of proteins of unknown function.; PDB: 2EE7_A.
Probab=29.05 E-value=62 Score=28.29 Aligned_cols=46 Identities=17% Similarity=0.198 Sum_probs=25.3
Q ss_pred eccHhHHHHHHHHHHHHHhhhhhccccCCCcccchhhhHHHHhhhhh
Q 023067 52 AMGQAINKTVAIAEIIKVCIYFNIFTLSPISSLSLSSCLLAIYNQLA 98 (288)
Q Consensus 52 g~G~AIsKAV~vAEILK~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~ 98 (288)
-+-+..+..+.|||||+ -.|.++++++.|++..-...-+.-|+++-
T Consensus 16 n~~rDfsdG~lvAEIl~-~y~p~~vdlh~y~~~~s~~~Kl~NW~~Ln 61 (158)
T PF06294_consen 16 NIRRDFSDGYLVAEILS-RYYPKLVDLHNYSNGNSVAQKLNNWETLN 61 (158)
T ss_dssp -HHHHHTTSHHHHHHHH-HH-TTT---SS----SSHHHHHHHHHHHH
T ss_pred chHHHcccccHHHHHHH-HHCCCCccccccCCCCCHHHHHHHHHHHH
Confidence 34456777899999999 45688889999888655544444454543
No 25
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]
Probab=24.46 E-value=83 Score=30.94 Aligned_cols=41 Identities=27% Similarity=0.473 Sum_probs=32.8
Q ss_pred CEEEEEeccHhHHHHHHHHHHHHHhh----hhhccccCCCcccch
Q 023067 46 KEIVLKAMGQAINKTVAIAEIIKVCI----YFNIFTLSPISSLSL 86 (288)
Q Consensus 46 ~~IvIkg~G~AIsKAV~vAEILK~~~----~~q~~~~~~~~~~~~ 86 (288)
..|.|-|+|--+.+|+..|++||..= -..+|++-||+.-.+
T Consensus 193 ~D~tiiA~G~mv~~al~AA~~L~~~GIsa~Vi~m~tIKPiD~~~i 237 (312)
T COG3958 193 SDLTIIATGVMVAEALEAAEILKKEGISAAVINMFTIKPIDEQAI 237 (312)
T ss_pred CceEEEecCcchHHHHHHHHHHHhcCCCEEEEecCccCCCCHHHH
Confidence 68999999999999999999998322 277788888775444
No 26
>PF14384 DUF4415: Domain of unknown function (DUF4415)
Probab=23.60 E-value=13 Score=27.58 Aligned_cols=21 Identities=24% Similarity=0.485 Sum_probs=17.7
Q ss_pred eEEEEeeCCCCC---CCCCCccCC
Q 023067 143 MISITFSTRELN---KNSPGYQSP 163 (288)
Q Consensus 143 aI~ItLSkd~ld---~k~pGYQ~P 163 (288)
.|+|+|+.|-++ ..++|||+=
T Consensus 30 ~Vtirld~dVl~~fka~G~gyQtr 53 (62)
T PF14384_consen 30 QVTIRLDPDVLEWFKAQGKGYQTR 53 (62)
T ss_pred eEEEEeCHHHHHHHHHHChhHHHH
Confidence 799999998888 688999863
No 27
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=22.28 E-value=29 Score=33.31 Aligned_cols=43 Identities=0% Similarity=-0.049 Sum_probs=38.0
Q ss_pred eeEeeeeeeEEEEeeCCCCC--CCCCCccCCCCCCcchhhhHHHH
Q 023067 135 VEMTRHVSMISITFSTRELN--KNSPGYQSPHNAEQPKLQYRYQQ 177 (288)
Q Consensus 135 ~~v~R~VsaI~ItLSkd~ld--~k~pGYQ~P~~~dqvk~~~~~~~ 177 (288)
..+.+..+.+.|-|-+|..+ .++|+|++|.+.|++..|.+.+.
T Consensus 208 eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~Ln 252 (270)
T KOG0122|consen 208 ELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLN 252 (270)
T ss_pred HHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHcc
Confidence 34677888999999999998 89999999999999999998873
No 28
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=21.86 E-value=1.3e+02 Score=30.60 Aligned_cols=9 Identities=33% Similarity=0.737 Sum_probs=4.7
Q ss_pred hhhccccCC
Q 023067 72 YFNIFTLSP 80 (288)
Q Consensus 72 ~~q~~~~~~ 80 (288)
|.|-|.|-|
T Consensus 110 F~QtFfLap 118 (419)
T KOG0116|consen 110 FSQTFFLAP 118 (419)
T ss_pred EEEEEEEee
Confidence 455555555
No 29
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=20.42 E-value=90 Score=30.96 Aligned_cols=7 Identities=14% Similarity=0.240 Sum_probs=3.1
Q ss_pred EEEeeCC
Q 023067 145 SITFSTR 151 (288)
Q Consensus 145 ~ItLSkd 151 (288)
.|.++||
T Consensus 297 ~iLVaTd 303 (456)
T PRK10590 297 RVLVATD 303 (456)
T ss_pred cEEEEcc
Confidence 3444444
Done!